207 282 14 42 chr12 404 475 -144282014 + L2 LINE L2 3196 3264 -8 190 226 132 19 chr12 5233 5286 -144277203 + MIR SINE MIR 87 145 -63 180 0 0 0 chr12 7180 7200 -144275289 + (CAGGG)n Simple_repeat Simple_repeat 2 21 0 289 200 13 40 chr12 8632 8707 -144273782 + MIR SINE MIR 51 123 -139 213 309 37 12 chr12 8911 8992 -144273497 + MIR SINE MIR 180 262 0 263 225 119 0 chr12 10716 10820 -144271669 + MIR SINE MIR 25 150 -62 518 282 98 20 chr12 10837 11040 -144271449 + MIR SINE MIR 5 236 -26 323 68 85 0 chr12 11052 11111 -144271378 - MADE1 DNA Mariner -14 66 3 632 353 95 16 chr12 11233 11550 -144270939 - L3b LINE CR1 -95 1488 1147 340 320 176 0 chr12 11704 11857 -144270632 + MIR SINE MIR 7 186 -76 791 175 36 0 chr12 11884 12021 -144270468 - FLAM_C SINE Alu -1 142 1 212 275 0 66 chr12 12024 12115 -144270374 + CT-rich Low_complexity Low_complexity 1 85 0 268 299 210 6 chr12 12672 12829 -144269660 + MIR SINE MIR 68 256 -6 401 329 77 31 chr12 13125 13347 -144269142 + L1MC4 LINE L1 7429 7660 -382 499 310 66 68 chr12 14340 14814 -144267675 + L2 LINE L2 2713 3205 -108 298 283 93 78 chr12 14838 15043 -144267446 - L2 LINE L2 -6 3307 3100 249 339 179 9 chr12 15203 15427 -144267062 - L2 LINE L2 -577 2737 2476 * 319 269 39 48 chr12 15417 15521 -144266968 + L2 LINE L2 3166 3268 -4 323 167 23 92 chr12 16244 16418 -144266071 + G-rich Low_complexity Low_complexity 2 163 0 194 389 56 0 chr12 17242 17350 -144265139 - L3b LINE CR1 -130 1453 1340 236 229 0 0 chr12 17403 17451 -144265038 + L2 LINE L2 3262 3309 -4 3248 279 97 18 chr12 18705 20174 -144262315 + HAL1 LINE L1 78 1662 -845 532 297 170 3 chr12 20187 20557 -144261932 + HAL1 LINE L1 1723 2154 -353 253 212 9 80 chr12 20558 20661 -144261828 + HAL1 LINE L1 2214 2310 -197 1912 135 0 0 chr12 20661 20928 -144261561 + AluSx SINE Alu 1 267 -45 768 275 48 7 chr12 20956 21229 -144261260 + L1ME3 LINE L1 5879 6162 0 528 253 66 11 chr12 21237 21419 -144261070 + HAL1 LINE L1 2306 2497 -10 313 341 29 0 chr12 23258 23396 -144259093 + MIR3 SINE MIR 52 193 -15 323 324 11 28 chr12 24732 24914 -144257575 + GA-rich Low_complexity Low_complexity 2 180 0 417 289 35 52 chr12 25595 25768 -144256721 + MER5B DNA MER1_type 1 170 -8 184 214 18 71 chr12 26131 26187 -144256302 + L3 LINE CR1 1492 1544 -33 195 215 139 25 chr12 26763 26842 -144255647 - MIR SINE MIR -108 154 67 205 325 50 50 chr12 26967 27087 -144255402 - MIR SINE MIR -29 233 114 1055 326 67 41 chr12 27473 28411 -144254078 - L2 LINE L2 -1 3271 2313 771 279 165 0 chr12 28730 29135 -144253354 + L2 LINE L2 1640 2111 -1203 299 344 139 35 chr12 29492 30071 -144252418 + L2 LINE L2 2545 3272 0 947 189 22 11 chr12 31240 31425 -144251064 - MER5A DNA MER1_type -2 187 1 381 335 12 48 chr12 31478 31645 -144250844 + MIR SINE MIR 96 256 -6 324 256 0 23 chr12 31916 32002 -144250487 + MIR3 SINE MIR 95 178 -30 632 313 55 9 chr12 32081 32312 -144250177 + MIR SINE MIR 3 241 -21 280 179 26 0 chr12 32859 32937 -144249552 + CT-rich Low_complexity Low_complexity 1 80 0 1304 172 12 124 chr12 32937 33275 -144249214 - AluJo SINE Alu -1 311 12 848 196 7 0 chr12 34201 34349 -144248140 + FRAM SINE Alu 20 168 -8 277 239 230 9 chr12 34350 34463 -144248026 - MIR SINE MIR -8 254 117 1558 196 21 7 chr12 34487 34778 -144247711 + AluJo SINE Alu 1 295 -17 369 0 0 0 chr12 35752 35793 -144246696 + (CA)n Simple_repeat Simple_repeat 1 41 0 542 238 89 12 chr12 36149 36317 -144246172 - MIR3 SINE MIR -14 194 14 212 160 0 60 chr12 36902 36952 -144245537 + GA-rich Low_complexity Low_complexity 1 47 0 189 312 48 91 chr12 37148 37334 -144245155 - MIR3 SINE MIR -1 207 30 207 374 49 8 chr12 38018 38141 -144244348 + L2 LINE L2 3167 3294 -19 433 305 0 16 chr12 38906 39151 -144243338 + MER5C DNA MER1_type 25 324 0 238 331 107 22 chr12 39222 39400 -144243089 + MIR SINE MIR 32 224 -38 259 265 265 0 chr12 39401 39503 -144242986 + L2 LINE L2 3185 3313 0 198 118 0 0 chr12 40510 40544 -144241945 + (TCC)n Simple_repeat Simple_repeat 2 35 0 29 84 0 0 chr12 40864 40935 -144241554 + GC_rich Low_complexity Low_complexity 1 71 0 1519 171 0 38 chr12 41657 41950 -144240539 + AluJo SINE Alu 1 282 -30 258 105 0 0 chr12 41952 41990 -144240499 + (T)n Simple_repeat Simple_repeat 1 38 0 350 276 35 55 chr12 41999 42198 -144240291 + L1MC5 LINE L1 7713 7907 -54 2352 235 152 3 chr12 43589 44155 -144238334 - MLT1E1 LTR MaLR 0 654 5 2166 95 3 16 chr12 44473 44777 -144237712 - AluSx SINE Alu -12 300 1 1228 166 0 10 chr12 44814 45007 -144237482 - AluSx SINE Alu -121 191 1 900 292 30 28 chr12 45007 45507 -144236982 - L1M4 LINE L1 -2120 4026 3526 403 119 0 0 chr12 45565 45624 -144236865 - Alu SINE Alu -7 304 246 914 143 0 0 chr12 45632 45765 -144236724 - AluJb SINE Alu -179 133 1 1651 180 3 3 chr12 45766 46055 -144236434 - AluJb SINE Alu -3 309 21 699 296 55 17 chr12 46058 46477 -144236012 - L1M4 LINE L1 -2642 3504 3070 653 106 0 11 chr12 47813 47907 -144234582 + AluJo SINE Alu 44 136 -176 1254 199 3 94 chr12 47909 48023 -144234466 + AluJo SINE Alu 4 127 -185 1600 111 0 0 chr12 48023 48248 -144234241 - AluSg/x SINE Alu -3 309 85 1254 199 3 94 chr12 48248 48464 -144234025 + AluJo SINE Alu 127 304 -8 183 246 116 0 chr12 49032 49101 -144233388 + L2 LINE L2 3021 3097 -216 212 349 0 0 chr12 49166 49229 -144233260 + L2 LINE L2 3217 3279 -34 195 316 32 53 chr12 49353 49448 -144233041 + L3b LINE CR1 1243 1335 -248 751 285 130 12 chr12 50970 51293 -144231196 - MLT1K LTR MaLR 0 588 228 366 311 155 24 chr12 52017 52223 -144230266 - L3 LINE CR1 -12 1565 1333 263 277 43 11 chr12 52386 52480 -144230009 - MIR SINE MIR -132 130 34 583 353 28 8 chr12 54974 55229 -144227260 - MLT1L LTR MaLR -17 598 339 180 0 0 0 chr12 55252 55272 -144227217 + (CCA)n Simple_repeat Simple_repeat 1 20 0 204 125 0 0 chr12 55327 55359 -144227130 + (TAA)n Simple_repeat Simple_repeat 3 34 0 489 232 271 34 chr12 55359 55536 -144226953 - MIR SINE MIR 0 262 44 283 246 184 9 chr12 56532 56646 -144225843 - MER117 DNA MER1_type -9 188 55 357 309 25 56 chr12 56664 56826 -144225663 - MIR3 SINE MIR -49 159 3 262 286 0 13 chr12 58201 58278 -144224211 + (TG)n Simple_repeat Simple_repeat 2 77 0 4300 141 49 59 chr12 58314 59715 -144222774 + pTR5 LTR ERV1 742 2438 0 962 241 56 25 chr12 60267 60553 -144221936 + MLT1F LTR MaLR 240 534 -8 256 238 114 9 chr12 60581 60686 -144221803 - MLT1L LTR MaLR -221 321 206 364 305 198 0 chr12 61785 61982 -144220507 - L1M4 LINE L1 -1882 4264 4029 1113 134 6 0 chr12 61990 62161 -144220328 - AluSg/x SINE Alu -15 295 124 2518 42 3 0 chr12 62161 62468 -144220021 - AluY SINE Alu -3 308 1 1021 343 50 48 chr12 62476 62850 -144219639 - BaEV-int LTR ERV1 -2711 3938 3566 315 0 0 0 chr12 62850 62885 -144219604 + (CCCTAA)n Simple_repeat Simple_repeat 1 35 0 1021 343 50 48 chr12 62885 63352 -144219137 - BaEV-int LTR ERV1 -3083 3566 3095 603 278 147 4 chr12 63877 64129 -144218360 + MER102b DNA MER1_type 51 338 -3 251 308 109 19 chr12 64191 64347 -144218142 - L3 LINE CR1 0 1577 1408 337 246 45 18 chr12 64631 64741 -144217748 - LTR18B LTR ERVL -234 380 268 522 96 0 0 chr12 64793 64866 -144217623 - LTR18B LTR ERVL -212 402 330 211 291 0 0 chr12 64882 64937 -144217552 + CT-rich Low_complexity Low_complexity 2 56 0 1274 323 40 32 chr12 64942 65701 -144216788 - BaEV-int LTR ERV1 -5731 2054 1290 576 333 25 45 chr12 65898 66255 -144216234 - BaEV-int LTR ERV1 -6779 1006 657 245 202 19 106 chr12 67873 67977 -144214512 + MIR3 SINE MIR 87 181 -27 206 125 0 54 chr12 68177 68233 -144214256 + (TTA)n Simple_repeat Simple_repeat 2 54 0 317 302 38 9 chr12 68612 68718 -144213771 - MIR SINE MIR -109 153 45 588 297 80 6 chr12 69230 69451 -144213038 + MIR SINE MIR 22 258 -4 181 330 66 47 chr12 70286 70392 -144212097 + L3b LINE CR1 1342 1449 -134 528 267 142 22 chr12 70870 71095 -144211394 - MIR SINE MIR -3 259 8 394 267 60 0 chr12 71452 71568 -144210921 - MIR SINE MIR -117 145 23 360 239 90 22 chr12 73350 73484 -144209005 - MIR3 SINE MIR -49 159 17 398 333 45 0 chr12 74310 74466 -144208023 - MIR SINE MIR -64 198 36 828 293 129 25 chr12 74847 75243 -144207246 - LTR16A LTR ERVL -7 443 7 268 296 133 104 chr12 75304 75544 -144206945 - L2 LINE L2 0 3272 3026 363 239 55 47 chr12 77092 77290 -144205199 - MIR SINE MIR -9 253 6 359 293 49 0 chr12 77553 77676 -144204813 - MIR3 SINE MIR -11 197 69 216 250 0 0 chr12 77677 77733 -144204756 + (TG)n Simple_repeat Simple_repeat 1 56 0 1082 265 21 11 chr12 77797 78080 -144204409 - LTR16C LTR ERVL -52 439 154 1622 138 12 108 chr12 78409 78742 -144203747 + AluJb SINE Alu 1 301 -1 372 196 19 84 chr12 79109 79216 -144203273 + MIR3 SINE MIR 100 199 -9 193 297 99 0 chr12 79266 79357 -144203132 - L2 LINE L2 -10 3303 3204 2347 98 0 6 chr12 79391 79706 -144202783 + AluSq SINE Alu 1 313 0 356 306 131 33 chr12 79711 79894 -144202595 - MIR SINE MIR -13 249 49 236 291 100 0 chr12 79995 80105 -144202384 - L2 LINE L2 -218 3054 2934 691 266 62 0 chr12 80442 80634 -144201855 - MIR SINE MIR -1 261 58 261 0 0 0 chr12 81831 81860 -144200629 + (TG)n Simple_repeat Simple_repeat 1 29 0 420 286 27 38 chr12 81897 82082 -144200407 + MIR3 SINE MIR 20 202 -6 261 354 82 38 chr12 82142 82300 -144200189 + L3 LINE CR1 338 502 -1075 371 326 21 0 chr12 82747 82888 -144199601 - L2 LINE L2 -272 3041 2898 493 206 70 106 chr12 82988 83187 -144199302 + MER20 DNA MER1_type 2 193 -26 1633 239 268 8 chr12 83204 83988 -144198501 - L2 LINE L2 -508 2806 1819 458 254 98 54 chr12 83988 84264 -144198225 + L1MC5 LINE L1 7510 7797 -164 479 229 118 7 chr12 84305 84458 -144198031 - L2 LINE L2 -1476 1838 1669 302 355 0 8 chr12 84576 84697 -144197792 - MIR SINE MIR 0 262 143 776 253 192 15 chr12 85182 85589 -144196900 - L2 LINE L2 0 3313 2835 470 295 109 6 chr12 85806 85989 -144196500 - MIR SINE MIR -6 256 55 216 305 0 24 chr12 86353 86435 -144196054 + (TATG)n Simple_repeat Simple_repeat 3 82 0 263 194 90 15 chr12 87683 87750 -144194739 + MIR SINE MIR 84 155 -107 291 312 91 26 chr12 87910 88064 -144194425 - L2 LINE L2 -3 3269 3106 547 267 86 16 chr12 88402 88589 -144193900 - MIR SINE MIR -19 243 44 537 345 17 2 chr12 88640 88838 -144193651 - MIR SINE MIR -19 243 43 403 306 67 22 chr12 89012 89146 -144193343 - MLT1G1 LTR MaLR -28 567 428 331 194 0 15 chr12 89196 89263 -144193226 - MLT1G1 LTR MaLR -280 315 250 474 348 98 14 chr12 89282 89710 -144192779 - L2 LINE L2 -1258 2056 1593 210 276 38 57 chr12 89769 89874 -144192615 - MIR SINE MIR -11 251 149 270 277 36 22 chr12 91387 91407 -144191082 - L1MA10 LINE L1 0 6334 6315 3182 228 51 15 chr12 91407 92745 -144189744 - L1ME1 LINE L1 -8 6158 4673 1670 139 41 60 chr12 93440 93756 -144188733 + AluJb SINE Alu 1 310 -2 206 143 29 0 chr12 94341 94376 -144188113 - MER91 DNA MER1_type -117 73 38 272 324 20 20 chr12 95019 95121 -144187368 - MIR SINE MIR -80 182 81 2561 142 51 10 chr12 95622 96037 -144186452 + MSTB1 LTR MaLR 1 432 0 193 267 0 0 chr12 96100 96145 -144186344 - L2 LINE L2 -23 3290 3246 281 272 62 0 chr12 96210 96291 -144186198 + MIR SINE MIR 17 102 -160 349 286 19 23 chr12 96693 97005 -144185484 + C-rich Low_complexity Low_complexity 1 311 0 248 130 22 0 chr12 97025 97071 -144185418 + CT-rich Low_complexity Low_complexity 1 47 0 9968 59 3 0 chr12 97193 98540 -144183949 - L1P LINE L1 -1772 4374 3024 274 224 105 26 chr12 98540 98616 -144183873 + MLT1J LTR MaLR 330 411 -100 806 120 0 0 chr12 98719 98827 -144183662 - FLAM_C SINE Alu -35 108 1 479 49 0 0 chr12 98830 98891 -144183598 + L1P LINE L1 2970 3030 -3116 305 344 0 16 chr12 99004 99132 -144183357 - MLT1J LTR MaLR -270 241 116 270 264 18 36 chr12 99233 99343 -144183146 - L2 LINE L2 -222 3050 2943 906 274 145 3 chr12 99347 99720 -144182769 - MLT1J2 LTR MaLR 0 450 25 309 296 43 17 chr12 100034 100149 -144182340 - MIR SINE MIR -58 204 87 879 157 0 0 chr12 100149 100283 -144182206 + AluJo SINE Alu 1 134 -178 1586 189 36 26 chr12 101825 102211 -144180278 + Charlie5 DNA MER1_type 2234 2623 0 216 341 54 16 chr12 102512 102641 -144179848 + L2 LINE L2 3139 3272 0 521 181 75 8 chr12 102832 102965 -144179524 + L2 LINE L2 2600 2741 -573 1270 234 31 31 chr12 103029 103388 -144179101 + MLT1E-int LTR MaLR 248 606 -765 466 269 147 103 chr12 103589 104237 -144178252 + MLT1E-int LTR MaLR 696 1371 0 1544 228 127 29 chr12 104241 104396 -144178093 + MLT1E LTR MaLR 2 140 -453 2223 133 0 0 chr12 104396 104697 -144177792 + AluSx SINE Alu 1 301 -11 1544 228 127 29 chr12 104697 105067 -144177422 + MLT1E LTR MaLR 140 579 -14 590 324 29 3 chr12 105079 105404 -144177085 + L2 LINE L2 2792 3125 -188 1395 209 0 0 chr12 105405 105673 -144176816 - AluJb SINE Alu -5 307 40 235 230 257 0 chr12 105695 105769 -144176720 + L2 LINE L2 3221 3313 0 223 267 60 26 chr12 106072 106188 -144176301 - MIR SINE MIR -59 149 30 6060 97 11 0 chr12 106973 108159 -144174330 - L1PA10 LINE L1 -5 6163 4962 510 246 22 22 chr12 108706 108840 -144173649 + MIR SINE MIR 20 153 -109 2955 217 71 19 chr12 108911 109709 -144172780 - L1ME1 LINE L1 -2 6164 5325 566 329 46 71 chr12 109725 110141 -144172348 + L2 LINE L2 2230 2628 -686 2153 140 13 0 chr12 110141 110448 -144172041 - AluSx SINE Alu -1 311 1 566 329 46 71 chr12 110448 110620 -144171869 + L2 LINE L2 2628 2803 -511 621 327 59 11 chr12 110661 110933 -144171556 + L2 LINE L2 2910 3194 -78 915 168 23 51 chr12 110958 111154 -144171335 - MER45B DNA AcHobo -541 1040 840 2161 104 0 4 chr12 111154 111433 -144171056 + AluSg SINE Alu 1 278 -32 200 35 35 0 chr12 111433 111462 -144171027 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 915 168 23 51 chr12 111462 111478 -144171011 - MER45B DNA AcHobo -739 842 833 2486 123 47 90 chr12 111697 112288 -144170201 - MER4D LTR ERV1 -337 566 1 505 303 40 21 chr12 112288 112504 -144169985 - L1M2 LINE L1 -600 5574 5349 341 364 64 27 chr12 112535 112925 -144169564 - L1M4 LINE L1 -764 5382 4982 1622 179 65 4 chr12 112939 113218 -144169271 + AluJo SINE Alu 4 299 -13 264 200 0 0 chr12 113486 113536 -144168953 + MIR3 SINE MIR 157 206 -2 531 247 47 65 chr12 113642 113693 -144168796 - MIR3 SINE MIR -6 202 152 669 172 28 50 chr12 113693 113873 -144168616 + MER5B DNA MER1_type 2 177 -1 531 247 47 65 chr12 113873 113991 -144168498 - MIR3 SINE MIR -56 152 36 185 265 29 15 chr12 114290 114358 -144168131 - L2 LINE L2 -210 3062 2994 393 237 61 9 chr12 115501 115615 -144166874 + MIR3 SINE MIR 86 205 -3 198 0 0 0 chr12 117105 117127 -144165362 + (TCTG)n Simple_repeat Simple_repeat 1 22 0 245 352 0 22 chr12 118920 119102 -144163387 + G-rich Low_complexity Low_complexity 1 178 0 * 274 245 11 87 chr12 119012 119196 -144163293 + (CGGGG)n Simple_repeat Simple_repeat 5 174 0 372 300 155 20 chr12 119446 119646 -144162843 - MIR SINE MIR -1 261 35 398 240 87 27 chr12 119744 119894 -144162595 - L1ME4a LINE L1 -2 6119 5961 404 175 25 0 chr12 121253 121333 -144161156 - MER45B DNA AcHobo -431 609 528 419 185 62 0 chr12 121334 121415 -144161074 - 5S rRNA rRNA -33 88 3 1700 239 95 14 chr12 121415 121918 -144160571 - MER45B DNA AcHobo -496 544 1 184 154 154 19 chr12 121918 121970 -144160519 + L2 LINE L2 3214 3272 0 325 281 125 23 chr12 122480 122608 -144159881 + MIR3 SINE MIR 22 162 -46 794 294 20 20 chr12 122704 122717 -144159772 - MIR SINE MIR 0 262 250 2285 112 3 0 chr12 122717 123020 -144159469 + AluSc SINE Alu 1 304 -5 794 294 20 20 chr12 123020 123258 -144159231 - MIR SINE MIR -11 251 11 330 195 0 0 chr12 123291 123368 -144159121 + (TCCA)n Simple_repeat Simple_repeat 3 79 0 629 302 80 7 chr12 123721 123996 -144158493 + L3 LINE CR1 1282 1576 -1 2004 166 7 0 chr12 124198 124506 -144157983 + AluJo SINE Alu 1 310 -2 234 286 170 0 chr12 124764 124876 -144157613 - MIR3 SINE MIR -63 145 15 482 276 21 21 chr12 124939 125084 -144157405 - MIR SINE MIR -112 150 6 218 276 105 0 chr12 125385 125461 -144157028 + MIR SINE MIR 46 129 -133 218 281 34 45 chr12 125561 125650 -144156839 + MIR SINE MIR 17 104 -104 1522 83 98 5 chr12 125659 125864 -144156625 - AluY SINE Alu -87 224 1 861 223 31 49 chr12 125864 126151 -144156338 + L1ME2 LINE L1 5599 5880 -286 1929 179 0 0 chr12 126160 126456 -144156033 + AluJb SINE Alu 1 296 -16 18374 150 38 17 chr12 126469 130012 -144152477 + L1PB1 LINE L1 3 3470 -3397 1911 117 4 11 chr12 130012 130278 -144152211 + AluSp SINE Alu 50 313 0 18374 150 38 17 chr12 130278 132762 -144149727 + L1PB1 LINE L1 3470 6192 -675 1632 127 32 118 chr12 132762 133102 -144149387 + AluSq SINE Alu 1 311 -2 18374 150 38 17 chr12 133102 133791 -144148698 + L1PB1 LINE L1 6192 6865 -2 386 278 57 26 chr12 133774 133968 -144148521 + L1ME1 LINE L1 5822 6021 -145 * 333 228 0 0 chr12 133960 134039 -144148450 + L1ME2 LINE L1 6076 6154 -10 * 209 293 0 0 chr12 134066 134124 -144148365 - MER5A DNA MER1_type -45 144 87 1996 173 68 34 chr12 134146 134590 -144147899 + LTR2B LTR ERV1 32 490 0 195 259 37 0 chr12 134593 134647 -144147842 - MER5A DNA MER1_type -105 84 29 911 186 36 0 chr12 135226 135393 -144147096 + FRAM SINE Alu 4 176 0 231 357 43 45 chr12 135838 136142 -144146347 + L2 LINE L2 2924 3270 -2 208 329 14 0 chr12 136280 136350 -144146139 + MIR3 SINE MIR 123 193 -15 245 239 0 42 chr12 136539 136610 -144145879 + CT-rich Low_complexity Low_complexity 4 71 0 224 275 25 0 chr12 137251 137331 -144145158 + C-rich Low_complexity Low_complexity 2 83 0 228 331 16 24 chr12 141085 141209 -144141280 + CT-rich Low_complexity Low_complexity 2 124 0 2184 94 0 7 chr12 142947 143283 -144139206 + AluY SINE Alu 1 334 0 486 324 78 5 chr12 143379 143598 -144138891 + MIR SINE MIR 15 249 -13 1820 109 16 12 chr12 143630 143887 -144138602 + AluSx SINE Alu 55 312 0 198 405 34 6 chr12 144000 144178 -144138311 - L3b LINE CR1 -79 1504 1322 527 270 61 25 chr12 144941 145104 -144137385 - MIR3 SINE MIR -18 190 22 414 0 0 0 chr12 146270 146316 -144136173 + (CA)n Simple_repeat Simple_repeat 1 46 0 180 347 0 40 chr12 147489 147613 -144134876 + MIR SINE MIR 33 151 -57 22 0 0 0 chr12 148225 148247 -144134242 + GC_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr12 148283 148317 -144134172 + GC_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr12 148689 148712 -144133777 + AT_rich Low_complexity Low_complexity 1 23 0 520 272 140 30 chr12 148804 149039 -144133450 + MIR SINE MIR 1 261 -1 320 348 81 36 chr12 149146 149589 -144132900 - L3 LINE CR1 -291 1286 824 1545 166 8 4 chr12 149621 149874 -144132615 - AluJo SINE Alu -17 295 42 430 271 153 20 chr12 149882 150229 -144132260 - L1MC4a LINE L1 -1635 6173 5781 457 301 77 17 chr12 150875 151083 -144131406 - MIR SINE MIR 0 262 28 478 294 27 0 chr12 151966 152112 -144130377 - HERVI LTR ERV1 -2573 5212 5063 270 257 40 0 chr12 152764 152838 -144129651 + MIR3 SINE MIR 89 165 -43 433 264 14 47 chr12 153256 153468 -144129021 - L1MC4a LINE L1 -1875 5933 5729 2797 189 49 5 chr12 153647 154240 -144128249 - L1M2c LINE L1 -6157 632 14 3340 138 5 0 chr12 154241 154814 -144127675 - Tigger1 DNA MER2_type -1236 1182 607 1971 116 14 7 chr12 155281 155574 -144126915 - AluSx SINE Alu -17 295 1 180 0 0 0 chr12 155983 156003 -144126486 + (CCCTG)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr12 157034 157058 -144125431 + AT_rich Low_complexity Low_complexity 1 24 0 1617 178 0 4 chr12 157094 157363 -144125126 - AluSx SINE Alu -44 268 1 255 320 5 104 chr12 157553 157658 -144124831 + L3 LINE CR1 668 742 -835 2075 98 11 0 chr12 157658 157959 -144124530 + AluSg SINE Alu 1 304 0 255 320 5 104 chr12 157959 158074 -144124415 + L3 LINE CR1 742 867 -710 1757 21 0 0 chr12 158095 158334 -144124155 - L1P LINE L1 -791 5355 5117 324 253 23 0 chr12 158358 158445 -144124044 + MIR SINE MIR 48 136 -126 308 291 91 94 chr12 158431 158750 -144123739 + L2 LINE L2 2914 3231 -41 * 368 386 55 15 chr12 158994 159320 -144123169 + L2 LINE L2 2439 2777 -537 194 307 27 13 chr12 159700 159775 -144122714 + L2 LINE L2 3175 3250 -22 289 299 35 0 chr12 160327 160414 -144122075 + MIR3 SINE MIR 98 187 -21 417 239 46 23 chr12 160513 160643 -144121846 - L2 LINE L2 -1 3271 3139 589 323 22 35 chr12 160668 160900 -144121589 - MIR SINE MIR -19 243 15 218 343 0 14 chr12 162012 162085 -144120404 - L2 LINE L2 -1 3271 3200 186 286 79 0 chr12 162317 162380 -144120109 - L2 LINE L2 -19 3253 3186 283 301 165 5 chr12 163284 163484 -144119005 - MIR SINE MIR -3 259 21 209 214 45 107 chr12 163849 163961 -144118528 + MIR SINE MIR 17 121 -87 455 344 18 12 chr12 164603 164766 -144117723 - L2 LINE L2 0 3313 3150 1184 144 5 26 chr12 165031 165226 -144117263 + AluSx SINE Alu 1 191 -121 2166 95 3 16 chr12 165263 165567 -144116922 + AluSx SINE Alu 1 300 -12 2352 235 152 3 chr12 165885 166451 -144116038 + MLT1E1 LTR MaLR 5 654 0 350 276 35 55 chr12 167842 168041 -144114448 - L1MC5 LINE L1 -54 7907 7713 258 105 0 0 chr12 168050 168088 -144114401 + (A)n Simple_repeat Simple_repeat 1 38 0 1519 171 0 38 chr12 168090 168383 -144114106 - AluJo SINE Alu -30 282 1 29 84 0 0 chr12 169105 169176 -144113313 + GC_rich Low_complexity Low_complexity 1 71 0 198 118 0 0 chr12 169496 169530 -144112959 + (GGA)n Simple_repeat Simple_repeat 2 35 0 259 265 265 0 chr12 170536 170638 -144111851 - L2 LINE L2 0 3313 3185 238 331 107 22 chr12 170639 170817 -144111672 - MIR SINE MIR -38 224 32 433 305 0 16 chr12 170888 171133 -144111356 - MER5C DNA MER1_type 0 324 25 207 374 49 8 chr12 171898 172021 -144110468 - L2 LINE L2 -19 3294 3167 189 312 48 91 chr12 172705 172891 -144109598 + MIR3 SINE MIR 30 207 -1 212 160 0 60 chr12 173087 173137 -144109352 + CT-rich Low_complexity Low_complexity 1 47 0 542 238 89 12 chr12 173722 173890 -144108599 + MIR3 SINE MIR 14 194 -14 369 0 0 0 chr12 174246 174287 -144108202 + (TG)n Simple_repeat Simple_repeat 1 41 0 1558 196 21 7 chr12 175261 175552 -144106937 - AluJo SINE Alu -17 295 1 277 239 230 9 chr12 175576 175689 -144106800 + MIR SINE MIR 117 254 -8 848 196 7 0 chr12 175690 175838 -144106651 - FRAM SINE Alu -8 168 20 1304 172 12 124 chr12 176764 177102 -144105387 + AluJo SINE Alu 12 311 -1 280 179 26 0 chr12 177102 177180 -144105309 + GA-rich Low_complexity Low_complexity 1 80 0 660 311 58 9 chr12 177727 177952 -144104537 - MIR SINE MIR -21 241 6 324 256 0 23 chr12 178037 178123 -144104366 - MIR3 SINE MIR -30 178 95 381 335 12 48 chr12 178394 178561 -144103928 - MIR SINE MIR -6 256 96 947 189 22 11 chr12 178614 178799 -144103690 + MER5A DNA MER1_type 1 187 -2 299 344 139 35 chr12 179968 180547 -144101942 - L2 LINE L2 0 3272 2545 771 279 165 0 chr12 180904 181309 -144101180 - L2 LINE L2 -1203 2111 1640 1055 326 67 41 chr12 181628 182566 -144099923 + L2 LINE L2 2313 3271 -1 205 325 50 50 chr12 182952 183072 -144099417 + MIR SINE MIR 114 233 -29 195 215 139 25 chr12 183197 183276 -144099213 + MIR SINE MIR 67 154 -108 184 214 18 71 chr12 183852 183908 -144098581 - L3 LINE CR1 -33 1544 1492 417 289 35 52 chr12 184271 184444 -144098045 - MER5B DNA MER1_type -8 170 1 323 324 11 28 chr12 185125 185307 -144097182 + CT-rich Low_complexity Low_complexity 2 180 0 313 341 29 0 chr12 186643 186781 -144095708 - MIR3 SINE MIR -15 193 52 528 253 66 11 chr12 188620 188802 -144093687 - HAL1 LINE L1 -10 2497 2306 768 275 48 7 chr12 188810 189083 -144093406 - L1ME3 LINE L1 0 6162 5879 1893 132 4 0 chr12 189111 189377 -144093112 - AluSx SINE Alu -45 267 1 253 212 9 80 chr12 189377 189480 -144093009 - HAL1 LINE L1 -197 2310 2214 573 289 180 3 chr12 189481 189848 -144092641 - HAL1 LINE L1 -353 2154 1723 3248 279 97 18 chr12 189861 191330 -144091159 - HAL1 LINE L1 -845 1662 78 236 229 0 0 chr12 192585 192633 -144089856 - L2 LINE L2 -4 3309 3262 194 389 56 0 chr12 192686 192794 -144089695 + L3b LINE CR1 1340 1453 -130 323 167 23 92 chr12 193619 193793 -144088696 + C-rich Low_complexity Low_complexity 2 163 0 319 269 39 48 chr12 194516 194620 -144087869 - L2 LINE L2 -4 3268 3166 249 339 179 9 chr12 194610 194834 -144087655 + L2 LINE L2 2476 2737 -577 * 298 283 93 78 chr12 194994 195199 -144087290 + L2 LINE L2 3100 3307 -6 499 310 66 68 chr12 195223 195697 -144086792 - L2 LINE L2 -108 3205 2713 401 329 77 31 chr12 196690 196912 -144085577 - L1MC4 LINE L1 -382 7660 7429 268 299 210 6 chr12 197208 197365 -144085124 - MIR SINE MIR -6 256 68 212 275 0 66 chr12 197922 198013 -144084476 + GA-rich Low_complexity Low_complexity 1 85 0 791 175 36 0 chr12 198016 198153 -144084336 + FLAM_C SINE Alu 1 142 -1 340 320 176 0 chr12 198180 198333 -144084156 - MIR SINE MIR -76 186 7 632 353 95 16 chr12 198487 198804 -144083685 + L3b LINE CR1 1147 1488 -95 323 68 85 0 chr12 198926 198985 -144083504 + MADE1 DNA Mariner 3 66 -14 518 282 98 20 chr12 198997 199200 -144083289 - MIR SINE MIR -26 236 5 263 225 119 0 chr12 199217 199321 -144083168 - MIR SINE MIR -62 146 25 213 309 37 12 chr12 201045 201126 -144081363 - MIR SINE MIR 0 262 180 289 200 13 40 chr12 201330 201405 -144081084 - MIR SINE MIR -139 123 51 180 0 0 0 chr12 202837 202857 -144079632 + (CCCTG)n Simple_repeat Simple_repeat 2 21 0 190 226 132 19 chr12 204751 204804 -144077685 - MIR SINE MIR -63 145 87 192 77 0 0 chr12 208525 208551 -144073938 + (CCTG)n Simple_repeat Simple_repeat 4 29 0 207 282 14 42 chr12 209568 209639 -144072850 - L2 LINE L2 -8 3264 3196 195 316 32 53 chr12 210322 210417 -144072072 - L3b LINE CR1 -248 1335 1243 212 349 0 0 chr12 210541 210604 -144071885 - L2 LINE L2 -34 3279 3217 183 246 116 0 chr12 210669 210738 -144071751 - L2 LINE L2 -216 3097 3021 1266 201 3 88 chr12 211304 211520 -144070969 - AluJo SINE Alu -8 304 124 1600 114 0 0 chr12 211520 211747 -144070742 + AluSg/x SINE Alu 85 311 -1 1266 201 3 88 chr12 211747 211859 -144070630 - AluJo SINE Alu -188 124 4 653 106 0 11 chr12 211861 211955 -144070534 - AluJo SINE Alu -176 136 44 699 296 55 17 chr12 213291 213710 -144068779 + L1M4 LINE L1 3070 3504 -2642 1651 180 3 3 chr12 213713 214002 -144068487 + AluJb SINE Alu 21 309 -3 914 143 0 0 chr12 214003 214136 -144068353 + AluJb SINE Alu 1 133 -179 403 119 0 0 chr12 214144 214203 -144068286 + Alu SINE Alu 246 304 -7 1170 292 77 30 chr12 214261 214761 -144067728 + L1M4 LINE L1 3526 4070 -2076 2002 112 10 36 chr12 214761 214896 -144067593 + AluSx SINE Alu 1 138 -174 2541 40 0 0 chr12 214896 215195 -144067294 + AluY SINE Alu 10 308 -3 2002 112 10 36 chr12 215195 215364 -144067125 + AluSx SINE Alu 138 297 -15 1170 292 77 30 chr12 215364 215569 -144066920 + L1M4 LINE L1 4070 4264 -1882 849 245 56 25 chr12 216803 217089 -144065400 - MLT1F LTR MaLR -8 534 240 3915 142 49 59 chr12 217641 219042 -144063447 - pTR5 LTR ERV1 0 2438 742 262 286 0 13 chr12 219078 219155 -144063334 + (CA)n Simple_repeat Simple_repeat 2 77 0 373 309 25 56 chr12 220531 220693 -144061796 + MIR3 SINE MIR 3 159 -49 248 246 184 9 chr12 220711 220825 -144061664 + MER117 DNA MER1_type 55 188 -9 181 260 14 41 chr12 221695 221768 -144060721 + L2 LINE L2 3201 3271 -1 502 232 271 34 chr12 221821 221998 -144060491 + MIR SINE MIR 44 262 0 180 0 0 0 chr12 222082 222102 -144060387 + (TGG)n Simple_repeat Simple_repeat 1 20 0 534 349 28 8 chr12 222125 222380 -144060109 + MLT1L LTR MaLR 339 598 -17 181 262 119 12 chr12 224420 224504 -144057985 - L3 LINE CR1 -3 1574 1482 281 277 43 11 chr12 224874 224968 -144057521 + MIR SINE MIR 34 130 -132 391 311 155 24 chr12 225131 225337 -144057152 + L3 LINE CR1 1333 1565 -12 656 287 124 13 chr12 226070 226384 -144056105 + MLT1K LTR MaLR 240 588 0 1392 24 0 0 chr12 227463 227627 -144054862 + (TCCA)n Simple_repeat Simple_repeat 4 167 0 318 280 21 44 chr12 227942 228163 -144054326 + GA-rich Low_complexity Low_complexity 1 215 0 957 168 0 24 chr12 228837 229004 -144053485 + FRAM SINE Alu 2 164 -2 350 305 0 38 chr12 229020 229125 -144053364 + HAL1b LINE L1 1245 1345 -3 230 174 0 22 chr12 229557 229603 -144052886 + GA-rich Low_complexity Low_complexity 3 47 0 349 149 19 93 chr12 229646 229753 -144052736 - L1MA5 LINE L1 0 6300 6202 185 309 128 43 chr12 230190 230284 -144052205 - L3 LINE CR1 -72 1505 1404 314 370 45 19 chr12 230298 230452 -144052037 + L1ME4a LINE L1 5852 6009 -112 2528 40 7 0 chr12 230522 230825 -144051664 - AluY SINE Alu -5 306 2 225 286 0 0 chr12 230874 230923 -144051566 - L3 LINE CR1 -193 1384 1336 443 293 14 7 chr12 231765 231912 -144050577 + MER63A DNA MER1_type 63 210 0 435 371 38 24 chr12 232695 232908 -144049581 + L2 LINE L2 3098 3313 0 1611 131 35 46 chr12 233473 233756 -144048733 - AluJb SINE Alu 0 312 33 21 36 0 0 chr12 233903 233931 -144048558 + GC_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr12 234209 234243 -144048246 + GC_rich Low_complexity Low_complexity 1 34 0 559 257 115 40 chr12 235814 236040 -144046449 - MIR SINE MIR -15 247 5 494 295 81 59 chr12 236115 236489 -144046000 - L1ME4a LINE L1 -133 5988 5601 2529 182 25 2 chr12 236489 236934 -144045555 - L1MB3 LINE L1 -10 6173 5719 494 295 81 59 chr12 236934 237016 -144045473 - L1ME4a LINE L1 -520 5601 5522 24 0 0 0 chr12 237984 238008 -144044481 + AT_rich Low_complexity Low_complexity 1 24 0 1102 229 15 4 chr12 238996 239258 -144043231 + L1MB8 LINE L1 5874 6138 -40 685 312 113 27 chr12 239325 239890 -144042599 + L2 LINE L2 2700 3311 -2 237 282 141 0 chr12 239966 240037 -144042452 - MIR SINE MIR -65 197 117 209 373 13 0 chr12 240035 240110 -144042379 - MIR3 SINE MIR -130 78 3 * 331 307 81 32 chr12 240577 240763 -144041726 - MIR3 SINE MIR -56 206 12 297 269 81 62 chr12 242226 242386 -144040103 - MIR SINE MIR -1 261 99 307 261 49 12 chr12 242462 242588 -144039901 + MIR SINE MIR 64 200 -62 195 42 0 0 chr12 242936 242960 -144039529 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 347 354 111 0 chr12 243065 243209 -144039280 + L3b LINE CR1 1321 1480 -103 243 291 0 0 chr12 244850 244905 -144037584 + C-rich Low_complexity Low_complexity 5 59 0 659 262 38 29 chr12 247303 247513 -144034976 - MIR SINE MIR -50 212 1 1326 90 4 0 chr12 247621 247855 -144034634 + (TGGA)n Simple_repeat Simple_repeat 1 236 0 2422 51 0 3 chr12 248072 248368 -144034121 + AluY SINE Alu 1 295 -16 486 207 83 0 chr12 248577 248698 -144033791 - MIR SINE MIR -86 176 46 186 43 0 0 chr12 249120 249143 -144033346 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 713 238 117 26 chr12 252401 252632 -144029857 + MIR SINE MIR 9 260 -2 329 344 4 19 chr12 252667 252791 -144029698 + MIR SINE MIR 39 149 -59 234 378 0 0 chr12 253216 253298 -144029191 + L3b LINE CR1 1330 1411 -172 21 0 0 0 chr12 253833 253854 -144028635 + AT_rich Low_complexity Low_complexity 1 21 0 2098 123 0 13 chr12 255786 256094 -144026395 + AluSx SINE Alu 1 304 -8 229 213 5 190 chr12 256399 256615 -144025874 + L1MC4a LINE L1 5881 6056 -1752 539 217 109 22 chr12 257544 257682 -144024807 - MER6 DNA MER2_type 0 865 -5 203 272 48 97 chr12 259216 259319 -144023170 + MER5A DNA MER1_type 57 165 -24 641 278 20 7 chr12 260792 260943 -144021546 + MIR SINE MIR 2 154 -108 464 314 149 0 chr12 261093 261281 -144021208 + MIR SINE MIR 41 256 -6 244 204 9 157 chr12 262196 262304 -144020185 + L2 LINE L2 3220 3311 -2 435 288 108 0 chr12 262427 262566 -144019923 + MIR SINE MIR 104 257 -5 1579 97 4 25 chr12 264272 264510 -144017979 + MER41B LTR ERV1 1 233 -402 2656 108 18 13 chr12 264611 264890 -144017599 + MER41B LTR ERV1 236 520 -115 2113 106 0 0 chr12 264890 265236 -144017253 - AluSx SINE Alu 0 346 1 2656 108 18 13 chr12 265236 265353 -144017136 + MER41B LTR ERV1 520 635 0 6576 54 143 70 chr12 265792 266884 -144015605 + MER11A LTR ERVK 1 1266 0 219 125 175 0 chr12 266961 267001 -144015488 + L2 LINE L2 3267 3313 0 390 290 100 40 chr12 268794 268994 -144013495 + MIR SINE MIR 10 221 -41 500 264 156 27 chr12 269180 269514 -144012975 + L2 LINE L2 2497 2873 -441 954 267 83 55 chr12 269734 270191 -144012298 + L2 LINE L2 2843 3312 -1 1730 166 0 3 chr12 270631 270921 -144011568 - AluSx SINE Alu -21 291 3 423 218 99 14 chr12 270951 271093 -144011396 - L2 LINE L2 -1 3312 3159 2289 94 0 0 chr12 271442 271750 -144010739 + AluSg1 SINE Alu 1 308 -1 524 182 91 16 chr12 271884 272005 -144010484 - MER3 DNA MER1_type -4 205 76 229 148 37 111 chr12 272056 272110 -144010379 + MER3 DNA MER1_type 159 208 -1 * 451 174 43 65 chr12 272110 272154 -144010335 - MER3 DNA MER1_type -167 42 1 861 229 29 14 chr12 272252 272559 -144009930 + MER7A DNA MER2_type 1 337 0 569 129 11 11 chr12 272578 272671 -144009818 + Tigger2a DNA MER2_type 1 93 -341 374 243 0 0 chr12 273213 273287 -144009202 + FRAM/FAM SINE Alu 8 81 -85 243 163 20 0 chr12 273305 273354 -144009135 + L1MD3 LINE L1 7933 7982 -13 2085 99 0 17 chr12 273431 273733 -144008756 - AluSq SINE Alu -16 297 1 1871 166 78 24 chr12 274658 274825 -144007664 + MSTD LTR MaLR 1 158 -238 1885 131 3 17 chr12 274825 275122 -144007367 + AluJb SINE Alu 1 293 -19 1871 166 78 24 chr12 275122 275327 -144007162 + MSTD LTR MaLR 158 393 -3 5530 233 70 43 chr12 275445 275818 -144006671 + L1ME2 LINE L1 338 699 -5697 2199 116 0 0 chr12 275818 276121 -144006368 + AluSg SINE Alu 1 303 -7 1984 94 0 57 chr12 276121 276254 -144006235 + AluSc SINE Alu 1 140 -165 2247 78 0 3 chr12 276254 276547 -144005942 + AluY SINE Alu 1 292 -19 243 0 0 0 chr12 276551 276578 -144005911 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1984 94 0 57 chr12 276578 276761 -144005728 + AluSc SINE Alu 143 305 0 5530 233 70 43 chr12 276761 277145 -144005344 + L1ME2 LINE L1 699 1071 -5325 2280 117 0 0 chr12 277145 277454 -144005035 + AluSx SINE Alu 2 310 -2 5530 233 70 43 chr12 277454 278713 -144003776 + L1ME2 LINE L1 1071 2413 -3983 813 77 15 15 chr12 278713 278843 -144003646 + AluY SINE Alu 175 304 -7 9252 197 56 77 chr12 278844 281325 -144001164 + L1ME2 LINE L1 2362 4895 -1320 2170 66 0 0 chr12 281325 281596 -144000893 + AluY SINE Alu 33 303 -8 9252 197 56 77 chr12 281596 282091 -144000398 + L1ME2 LINE L1 4895 5272 -943 1659 146 0 71 chr12 282091 282413 -144000076 + AluJb SINE Alu 3 301 -11 9252 197 56 77 chr12 282413 282515 -143999974 + L1ME2 LINE L1 5272 5375 -840 315 273 108 0 chr12 282498 282637 -143999852 + L1ME2 LINE L1 5879 6032 -201 * 677 216 34 91 chr12 282658 282922 -143999567 + L1ME1 LINE L1 5899 6147 -19 1391 233 166 17 chr12 284761 285280 -143997209 + L2 LINE L2 1793 2388 -926 911 120 0 0 chr12 285283 285408 -143997081 + AluSq/x SINE Alu 1 125 -188 394 219 0 12 chr12 285434 285516 -143996973 + L2 LINE L2 2376 2456 -858 310 259 24 12 chr12 285487 285572 -143996917 - L2 LINE L2 -694 2620 2535 * 231 240 20 0 chr12 285696 285746 -143996743 - L2 LINE L2 -824 2490 2440 * 1119 236 97 95 chr12 285722 285834 -143996655 + L2 LINE L2 2609 2719 -594 2058 100 0 0 chr12 285834 286113 -143996376 + AluSx SINE Alu 3 281 -31 1119 236 97 95 chr12 286113 286722 -143995767 + L2 LINE L2 2719 3311 -2 728 281 41 27 chr12 289849 290070 -143992419 - MIR SINE MIR -38 224 1 241 304 107 14 chr12 290070 290182 -143992307 + MIR3 SINE MIR 79 204 -4 571 299 103 11 chr12 290889 291170 -143991319 + L1ME4a LINE L1 5610 5916 -205 676 264 83 25 chr12 291612 291840 -143990649 - MIR SINE MIR -8 254 5 2337 69 7 0 chr12 292063 292366 -143990123 + AluSq SINE Alu 1 305 -8 476 301 46 36 chr12 292641 292837 -143989652 + MIR SINE MIR 7 204 -58 216 97 0 0 chr12 293361 293392 -143989097 + (TCCCC)n Simple_repeat Simple_repeat 4 34 0 22 0 0 0 chr12 293913 293935 -143988554 + AT_rich Low_complexity Low_complexity 1 22 0 184 298 53 43 chr12 294144 294238 -143988251 + MIR SINE MIR 1 95 -167 3649 189 36 69 chr12 295866 296042 -143986447 + L1MC4a LINE L1 6888 7068 -740 664 178 85 8 chr12 296042 296160 -143986329 + FLAM_A SINE Alu 1 127 -6 3649 189 36 69 chr12 296160 296934 -143985555 + L1MC4a LINE L1 7068 7806 -2 1509 187 11 14 chr12 297129 297452 -143985037 - AluJo SINE Alu 0 322 1 725 312 16 28 chr12 297516 297766 -143984723 - MIR SINE MIR -10 252 6 2442 208 110 4 chr12 298577 299131 -143983358 - MER90 LTR ERV1 -1 613 1 617 250 0 59 chr12 299445 299597 -143982892 - MER5B DNA MER1_type -35 143 1 522 303 113 5 chr12 299606 299827 -143982662 - L3b LINE CR1 -235 1348 1104 482 365 6 6 chr12 300136 300303 -143982186 + MIR3 SINE MIR 20 186 -22 1843 82 49 98 chr12 300626 300954 -143981535 - AluSq SINE Alu -1 312 1 478 279 71 22 chr12 301028 301228 -143981261 - MIR SINE MIR -39 223 7 772 231 17 12 chr12 301228 301401 -143981088 + MER69A DNA AcHobo 4 177 0 290 131 262 0 chr12 303407 303468 -143979021 - MADE1 DNA Mariner -2 78 2 2080 211 117 20 chr12 303542 304083 -143978406 + MLT1E LTR MaLR 1 593 0 425 311 147 3 chr12 304226 304512 -143977977 + L1ME4a LINE L1 4965 5291 -855 388 236 145 37 chr12 304513 304755 -143977734 + L1ME4a LINE L1 5785 6052 -69 645 241 101 18 chr12 305327 305555 -143976934 + L1MB8 LINE L1 5932 6178 0 1803 113 0 8 chr12 305626 305873 -143976616 - AluSx SINE Alu -21 291 47 276 352 124 48 chr12 306009 306259 -143976230 + L3 LINE CR1 1099 1367 -210 955 204 11 0 chr12 306327 306513 -143975976 - MER5A DNA MER1_type -1 188 1 287 343 57 0 chr12 306732 306837 -143975652 - L2 LINE L2 -3 3310 3200 211 239 43 0 chr12 306912 306958 -143975531 - L2 LINE L2 -272 3041 2994 1208 123 16 0 chr12 307467 307654 -143974835 + L1PB1 LINE L1 5957 6146 -5 247 347 245 18 chr12 307824 309263 -143973226 - L2 LINE L2 -1231 2083 319 226 327 26 44 chr12 309912 310025 -143972464 + L3 LINE CR1 1449 1559 -18 422 230 120 0 chr12 312612 312712 -143969777 - FLAM_A SINE Alu -30 112 1 180 125 0 0 chr12 314636 314668 -143967821 + (TA)n Simple_repeat Simple_repeat 2 33 0 421 295 84 12 chr12 317339 317505 -143964984 + MIR SINE MIR 64 241 -21 422 274 85 24 chr12 317584 317748 -143964741 + MER5A DNA MER1_type 1 174 -15 599 202 9 0 chr12 319210 319319 -143963170 + MER81 DNA DNA 5 114 0 21 0 0 0 chr12 319623 319644 -143962845 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr12 319776 319816 -143962673 + AT_rich Low_complexity Low_complexity 1 40 0 1183 143 0 0 chr12 319979 320154 -143962335 + FRAM SINE Alu 1 167 -9 279 79 0 0 chr12 320311 320349 -143962140 + (T)n Simple_repeat Simple_repeat 1 38 0 859 186 17 29 chr12 320366 320538 -143961951 - FAM SINE Alu -5 170 1 587 311 33 6 chr12 321809 321989 -143960500 + MIR3 SINE MIR 3 187 -21 2196 105 0 10 chr12 322320 322624 -143959865 - AluSq SINE Alu -12 301 1 1394 172 22 0 chr12 323640 323907 -143958582 + L1MB4 LINE L1 5908 6180 0 2233 103 0 0 chr12 323915 324207 -143958282 + AluSx SINE Alu 1 292 -20 208 278 0 19 chr12 324882 324936 -143957553 + MIR SINE MIR 88 140 -122 278 251 50 112 chr12 325156 325335 -143957154 + MIR SINE MIR 36 203 -59 467 203 11 16 chr12 325647 325829 -143956660 + GA-rich Low_complexity Low_complexity 1 181 0 2194 102 0 10 chr12 326455 326758 -143955731 + AluSq SINE Alu 1 300 -13 430 319 112 11 chr12 327070 327258 -143955231 + L3 LINE CR1 1370 1576 -1 768 244 45 61 chr12 327796 328319 -143954170 + PABL_B LTR ERV1 1 667 0 30489 87 12 9 chr12 328405 334082 -143948407 + L1PA7 LINE L1 748 6467 -2 531 174 83 38 chr12 334280 334412 -143948077 + MER6B DNA MER2_type 1 138 -72 180 0 0 0 chr12 334865 334885 -143947604 + (T)n Simple_repeat Simple_repeat 1 20 0 235 135 0 0 chr12 334920 334957 -143947532 + tRNA-Cys-TGC tRNA tRNA 1 37 -38 23 54 0 0 chr12 335680 335717 -143946772 + AT_rich Low_complexity Low_complexity 1 37 0 2065 134 10 13 chr12 336388 336693 -143945796 - AluJb SINE Alu -8 304 1 2158 127 0 0 chr12 336879 337179 -143945310 + AluSx SINE Alu 1 300 -12 449 292 120 23 chr12 338662 338878 -143943611 + MIR SINE MIR 20 256 -6 378 304 113 16 chr12 339383 339577 -143942912 + L1ME LINE L1 5552 5764 -357 527 165 11 0 chr12 339578 339669 -143942820 + MER6 DNA MER2_type 1 92 -773 * 1460 136 54 7 chr12 339661 339940 -143942549 + MER6 DNA MER2_type 574 865 0 887 273 23 19 chr12 340441 340701 -143941788 - MIR SINE MIR 0 262 2 1836 152 3 13 chr12 340767 341069 -143941420 + AluJb SINE Alu 1 299 -13 340 163 98 11 chr12 341672 341764 -143940725 - LTR37A LTR ERV1 -54 372 273 918 87 0 0 chr12 341780 341895 -143940594 + AluSq/x SINE Alu 1 115 -197 2279 99 0 0 chr12 342170 342464 -143940025 + AluSx SINE Alu 1 294 -18 229 175 0 0 chr12 342923 342963 -143939526 + HAL1b LINE L1 859 898 -450 1042 194 142 36 chr12 343046 343376 -143939113 - Tigger5 DNA MER2_type -1 2322 1 286 186 69 98 chr12 343694 343796 -143938693 - MIR SINE MIR -56 206 108 24 0 0 0 chr12 343814 343838 -143938651 + AT_rich Low_complexity Low_complexity 1 24 0 239 336 69 8 chr12 343838 343969 -143938520 - MIR SINE MIR -122 140 2 321 241 51 0 chr12 344543 344622 -143937867 - L2 LINE L2 -31 3282 3200 2033 108 28 0 chr12 344626 344913 -143937576 - AluY SINE Alu -16 295 1 433 334 36 81 chr12 345084 345490 -143936999 - L2 LINE L2 -229 3043 2652 316 237 11 22 chr12 345600 345710 -143936779 + L1M2 LINE L1 1574 2060 -4323 1774 168 0 10 chr12 345710 346002 -143936487 + AluSx SINE Alu 1 289 -23 412 329 90 40 chr12 346106 346550 -143935939 - L2 LINE L2 -814 2500 2035 562 270 85 10 chr12 346629 346829 -143935660 + L2 LINE L2 3084 3298 -15 229 329 183 25 chr12 347294 347441 -143935048 + MIR3 SINE MIR 1 166 -74 1420 310 176 19 chr12 349086 349892 -143932597 - L2 LINE L2 -1 3312 2633 1709 171 0 11 chr12 349892 350200 -143932289 + AluJb SINE Alu 6 310 0 1420 310 176 19 chr12 350200 350631 -143931858 - L2 LINE L2 -680 2633 1876 2221 105 3 3 chr12 350633 350939 -143931550 + AluSx SINE Alu 1 306 -6 1195 263 60 75 chr12 352231 352816 -143929673 - L2 LINE L2 0 3313 2738 306 87 0 0 chr12 353629 353675 -143928814 + (A)n Simple_repeat Simple_repeat 1 46 0 1485 192 45 14 chr12 354443 354729 -143927760 + AluJo SINE Alu 1 295 -17 2297 122 0 0 chr12 355009 355313 -143927176 + AluSx SINE Alu 1 304 -8 1865 154 33 3 chr12 355821 356120 -143926369 + AluSx SINE Alu 3 310 -2 2150 130 0 0 chr12 356150 356450 -143926039 + AluSx SINE Alu 1 300 -12 2545 60 0 13 chr12 356998 357313 -143925176 + AluY SINE Alu 1 311 0 23 54 0 0 chr12 357796 357833 -143924656 + AT_rich Low_complexity Low_complexity 1 37 0 2110 130 7 0 chr12 357846 358145 -143924344 + AluSx SINE Alu 1 301 -11 1717 183 0 10 chr12 358149 358439 -143924050 + AluJo SINE Alu 1 287 -25 831 221 6 0 chr12 358474 358632 -143923857 + L1MA10 LINE L1 6175 6333 -1 24 32 0 0 chr12 359796 359827 -143922662 + AT_rich Low_complexity Low_complexity 1 31 0 288 0 0 0 chr12 360473 360505 -143921984 + (TG)n Simple_repeat Simple_repeat 2 33 0 355 91 0 232 chr12 361700 361799 -143920690 + MADE1 DNA Mariner 3 78 -2 193 122 0 61 chr12 361907 361956 -143920533 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 21 0 0 0 chr12 362384 362405 -143920084 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 362860 362881 -143919608 + AT_rich Low_complexity Low_complexity 1 21 0 2016 156 0 0 chr12 363555 363879 -143918610 + AluJo SINE Alu 1 324 0 26 0 0 0 chr12 364920 364946 -143917543 + AT_rich Low_complexity Low_complexity 1 26 0 241 172 58 23 chr12 365493 365580 -143916909 + L1MEd LINE L1 55 144 -5975 886 171 19 6 chr12 365763 365921 -143916568 + Charlie1b DNA MER1_type 52 211 -312 273 266 95 25 chr12 366015 366173 -143916316 + L1MEd LINE L1 927 1095 -5024 2468 84 0 3 chr12 366178 366487 -143916002 + AluSq SINE Alu 1 308 -5 2027 139 10 0 chr12 366495 366796 -143915693 + AluJb SINE Alu 1 304 -8 1734 135 24 0 chr12 367016 367268 -143915221 + AluSx SINE Alu 40 297 -15 2177 135 154 5 chr12 367371 367742 -143914747 + MSTA LTR MaLR 1 426 -2 2309 101 10 0 chr12 368065 368361 -143914128 - AluSq SINE Alu -14 299 1 281 160 27 40 chr12 368370 368445 -143914044 - L1MC5 LINE L1 -35 7926 7853 2529 185 70 39 chr12 368499 369044 -143913445 + MER68 LTR ERV1 1 562 0 2340 78 7 0 chr12 369319 369614 -143912875 + AluSp SINE Alu 4 300 -13 957 229 97 64 chr12 370174 370294 -143912195 + MLT1F LTR MaLR 10 125 -417 1967 149 0 10 chr12 370294 370596 -143911893 - AluJb SINE Alu -13 299 1 957 229 97 64 chr12 370596 370832 -143911657 + MLT1F LTR MaLR 125 439 -103 2366 95 0 3 chr12 370832 371138 -143911351 + AluSg SINE Alu 1 305 -5 957 229 97 64 chr12 371138 371239 -143911250 + MLT1F LTR MaLR 439 535 -7 916 237 62 16 chr12 371940 372038 -143910451 + L1M1 LINE L1 3384 3476 -4089 2018 160 3 0 chr12 372038 372345 -143910144 + AluSg SINE Alu 1 308 -2 916 237 62 16 chr12 372345 372605 -143909884 + L1M1 LINE L1 3476 3758 -3807 2250 100 0 7 chr12 372879 373180 -143909309 - AluSx SINE Alu -13 299 1 23 0 0 0 chr12 373189 373212 -143909277 + AT_rich Low_complexity Low_complexity 1 23 0 38608 80 12 8 chr12 373215 379337 -143903152 + L1PA6 LINE L1 2 6152 -2 2215 114 3 0 chr12 379440 379738 -143902751 - AluSq SINE Alu -14 299 1 2476 68 0 0 chr12 379749 380042 -143902447 - AluSg1 SINE Alu -12 297 5 476 252 148 0 chr12 380125 380240 -143902249 - FLAM_C SINE Alu 0 133 2 2225 95 10 0 chr12 380266 380561 -143901928 + AluSp SINE Alu 1 298 -15 2161 106 31 0 chr12 380573 380865 -143901624 + AluSx SINE Alu 1 301 -11 2596 59 0 0 chr12 381589 381909 -143900580 - L1PA7 LINE L1 -111 6043 5724 1013 118 0 0 chr12 382105 382240 -143900249 + AluSq/x SINE Alu 1 135 -178 2438 97 0 0 chr12 382240 382549 -143899940 + AluSx SINE Alu 1 309 -3 1520 168 60 3 chr12 383481 383766 -143898723 + AluJb SINE Alu 1 301 -11 2306 95 0 3 chr12 384059 384355 -143898134 + AluSc SINE Alu 1 295 -14 25 75 0 0 chr12 384656 384709 -143897780 + AT_rich Low_complexity Low_complexity 1 53 0 2343 78 10 0 chr12 384905 385198 -143897291 + AluY SINE Alu 1 296 -15 561 254 101 32 chr12 385694 385911 -143896578 - MIR SINE MIR 0 262 31 1634 155 18 14 chr12 387417 387694 -143894795 + AluJb SINE Alu 1 278 -34 1169 189 5 5 chr12 387722 387939 -143894550 + AluJo SINE Alu 85 301 -11 2499 85 0 0 chr12 387966 388273 -143894216 + AluSg SINE Alu 1 307 -3 394 306 107 40 chr12 388320 388572 -143893917 + MLT1L LTR MaLR 343 611 -4 2000 143 3 16 chr12 389109 389423 -143893066 + AluSg SINE Alu 1 310 0 671 189 56 103 chr12 389548 389781 -143892708 + L1MC4a LINE L1 6526 6747 -1061 186 270 16 48 chr12 389800 389863 -143892626 - L2 LINE L2 -799 2515 2455 1653 172 35 0 chr12 389888 390173 -143892316 + AluJb SINE Alu 1 295 -17 518 167 9 0 chr12 390187 390295 -143892194 + GA-rich Low_complexity Low_complexity 1 109 0 2016 134 10 3 chr12 390412 390702 -143891787 + AluSx SINE Alu 1 292 -20 344 331 165 36 chr12 390706 391465 -143891024 - L2 LINE L2 -1073 2241 1385 2379 85 0 0 chr12 391617 391912 -143890577 - AluY SINE Alu -16 295 1 521 199 38 61 chr12 393233 393364 -143889125 + FLAM_A SINE Alu 1 128 -5 3894 196 73 37 chr12 393616 394608 -143887881 + L1ME1 LINE L1 4550 5505 -661 2204 110 0 17 chr12 394608 394909 -143887580 + AluSx SINE Alu 1 296 -16 3894 196 73 37 chr12 394909 394922 -143887567 + L1ME1 LINE L1 5505 5516 -650 2399 72 16 0 chr12 394922 395227 -143887262 + AluY SINE Alu 1 310 -1 3894 196 73 37 chr12 395227 395479 -143887010 + L1ME1 LINE L1 5516 5757 -409 1920 150 0 3 chr12 395479 395772 -143886717 - AluJb SINE Alu -20 292 1 3894 196 73 37 chr12 395772 396083 -143886406 + L1ME1 LINE L1 5757 6161 -5 244 195 11 46 chr12 396847 396934 -143885555 + A-rich Low_complexity Low_complexity 4 87 0 1882 145 76 0 chr12 397246 397563 -143884926 + MER7A DNA MER2_type 1 339 -7 1513 153 16 70 chr12 397687 397833 -143884656 + AluJo SINE Alu 1 123 -189 1838 160 0 17 chr12 397833 398133 -143884356 + AluSx SINE Alu 1 295 -17 1513 153 16 70 chr12 398133 398299 -143884190 + AluJo SINE Alu 123 296 -16 1842 187 58 7 chr12 398302 398764 -143883725 + L1MB4 LINE L1 5594 6132 -48 492 197 50 131 chr12 398806 398868 -143883621 + MIR SINE MIR 29 94 -168 2072 109 13 3 chr12 398868 399170 -143883319 + AluSx SINE Alu 1 305 -7 492 197 50 131 chr12 399170 399305 -143883184 + MIR SINE MIR 94 210 -52 997 264 96 84 chr12 399715 400203 -143882286 - L2 LINE L2 -5 3308 2815 2195 123 0 7 chr12 400529 400838 -143881651 + AluSx SINE Alu 1 307 -5 37724 58 10 3 chr12 401031 407137 -143875352 - L1PA5 LINE L1 0 6154 11 502 228 228 0 chr12 407460 407618 -143874871 + HAL1 LINE L1 271 464 -2043 2097 239 113 16 chr12 407653 408394 -143874095 + HAL1 LINE L1 1185 1997 -510 21 36 0 0 chr12 408402 408430 -143874059 + AT_rich Low_complexity Low_complexity 1 28 0 795 267 71 8 chr12 408499 408694 -143873795 + HAL1 LINE L1 2253 2467 -40 1579 169 38 28 chr12 408694 408984 -143873505 - AluJo SINE Alu -19 293 1 795 267 71 8 chr12 408984 409028 -143873461 + HAL1 LINE L1 2467 2507 0 2458 70 0 3 chr12 409095 409395 -143873094 + AluY SINE Alu 1 299 -12 862 199 45 30 chr12 409764 409965 -143872524 + L1ME3 LINE L1 5959 6162 0 196 241 0 37 chr12 410336 410390 -143872099 + L3b LINE CR1 1532 1583 0 1924 131 31 3 chr12 410405 410696 -143871793 + AluSx SINE Alu 1 299 -13 2028 134 0 23 chr12 410852 411151 -143871338 + AluSx SINE Alu 1 292 -20 23 65 0 16 chr12 411190 411222 -143871267 + AT_rich Low_complexity Low_complexity 1 33 -28 1944 122 3 40 chr12 411222 411406 -143871083 - AluSq SINE Alu -21 292 122 2371 91 3 10 chr12 411406 411713 -143870776 - AluSp SINE Alu -8 305 1 1944 122 3 40 chr12 411713 411831 -143870658 - AluSq SINE Alu -191 122 1 23 65 0 16 chr12 411831 411860 -143870629 + AT_rich Low_complexity Low_complexity 33 61 0 1845 154 0 14 chr12 412236 412522 -143869967 - AluJo SINE Alu -22 290 9 1597 119 5 0 chr12 412569 412787 -143869702 + AluSp SINE Alu 1 219 -94 829 100 0 0 chr12 412787 412897 -143869592 + AluSp/q SINE Alu 188 297 -16 28 61 0 0 chr12 412921 412970 -143869519 + AT_rich Low_complexity Low_complexity 1 49 0 2085 115 3 26 chr12 413064 413369 -143869120 + AluSg SINE Alu 1 298 -12 1993 155 0 10 chr12 413632 413936 -143868553 - AluJb SINE Alu -11 301 1 23 33 0 0 chr12 414061 414091 -143868398 + AT_rich Low_complexity Low_complexity 1 30 0 1311 88 0 0 chr12 414174 414334 -143868155 - AluSp SINE Alu -19 294 135 1394 151 138 30 chr12 414633 414937 -143867552 + MER1B DNA MER1_type 1 337 0 2307 75 31 0 chr12 415327 415620 -143866869 + AluSx SINE Alu 1 302 -10 25 102 0 0 chr12 415799 415887 -143866602 + AT_rich Low_complexity Low_complexity 1 88 0 2588 120 31 2 chr12 416567 416984 -143865505 - Tigger4(Zombi) DNA MER2_type 0 2731 2303 862 159 0 0 chr12 416985 417117 -143865372 + FLAM_C SINE Alu 2 133 0 287 150 0 67 chr12 417125 417185 -143865304 - Tigger4(Zombi) DNA MER2_type -2675 56 1 257 288 194 12 chr12 418392 418552 -143863937 - MER5A DNA MER1_type 0 189 1 240 143 0 0 chr12 419968 420010 -143862479 + (CGAGG)n Simple_repeat Simple_repeat 4 45 0 182 297 94 0 chr12 420482 420546 -143861943 + L2 LINE L2 2380 2449 -865 1572 183 34 10 chr12 420900 421156 -143861333 + MLT2D LTR ERVL 113 378 -36 225 0 0 0 chr12 421156 421181 -143861308 + (CA)n Simple_repeat Simple_repeat 2 26 0 1572 183 34 10 chr12 421181 421219 -143861270 + MLT2D LTR ERVL 378 414 0 920 255 91 25 chr12 421223 421543 -143860946 - MLT1H LTR MaLR -182 413 45 2257 104 0 10 chr12 421591 421889 -143860600 + AluSq SINE Alu 3 297 -16 5225 166 121 35 chr12 422825 422881 -143859608 - Charlie1a DNA MER1_type -1306 1455 1405 2311 95 0 3 chr12 422881 423177 -143859312 + AluSx SINE Alu 1 295 -17 5225 166 121 35 chr12 423177 423525 -143858964 - Charlie1a DNA MER1_type -1356 1405 1088 1598 152 47 34 chr12 423525 423822 -143858667 - AluJo SINE Alu -1 311 11 5225 166 121 35 chr12 423822 423957 -143858532 - Charlie1a DNA MER1_type -1673 1088 966 2257 105 3 0 chr12 423957 424251 -143858238 - AluSx SINE Alu -17 295 1 5225 166 121 35 chr12 424251 424969 -143857520 - Charlie1a DNA MER1_type -1795 966 88 532 192 60 60 chr12 425242 425424 -143857065 - L2 LINE L2 0 3313 3132 1652 192 0 38 chr12 425490 425808 -143856681 - AluJo SINE Alu -6 306 1 203 77 0 26 chr12 425971 426010 -143856479 + (TAAAAA)n Simple_repeat Simple_repeat 2 39 0 2125 147 0 0 chr12 426031 426343 -143856146 + AluSx SINE Alu 1 312 0 837 187 0 0 chr12 426359 426493 -143855996 + FLAM_A SINE Alu 6 139 -3 2354 103 0 0 chr12 426529 426839 -143855650 + AluSx SINE Alu 1 310 -2 999 145 22 34 chr12 426855 427034 -143855455 - MER2 DNA MER2_type -168 177 1 1328 116 0 37 chr12 427337 427526 -143854963 - AluSg/x SINE Alu -23 289 108 635 85 0 0 chr12 427526 427608 -143854881 + AluSg1 SINE Alu 16 97 -212 187 286 0 18 chr12 427629 427685 -143854804 - L2 LINE L2 -665 2649 2595 4174 109 27 56 chr12 427872 428073 -143854416 - Tigger1 DNA MER2_type 0 2418 2213 2352 79 0 0 chr12 428073 428365 -143854124 - AluY SINE Alu -19 292 1 4174 109 27 56 chr12 428365 428863 -143853626 - Tigger1 DNA MER2_type -205 2213 1739 1036 65 0 0 chr12 428863 428987 -143853502 - AluSg/x SINE Alu -16 294 171 10588 122 20 44 chr12 428987 429178 -143853311 - Tigger1 DNA MER2_type -673 1745 1551 1715 171 31 3 chr12 429178 429471 -143853018 - AluJb SINE Alu -11 301 1 10588 122 20 44 chr12 429471 429595 -143852894 - Tigger1 DNA MER2_type -867 1551 1426 2271 92 10 3 chr12 429595 429889 -143852600 - AluSp SINE Alu -17 296 1 10588 122 20 44 chr12 429889 431340 -143851149 - Tigger1 DNA MER2_type -992 1426 19 212 190 70 10 chr12 432410 432482 -143850007 + MIR SINE MIR 113 189 -73 219 345 42 48 chr12 433114 433427 -143849062 - L2 LINE L2 -698 2616 2306 459 251 276 5 chr12 433705 433908 -143848581 - MIR SINE MIR 0 262 5 1874 162 7 0 chr12 433908 434211 -143848278 - AluJb SINE Alu -7 305 1 875 193 85 0 chr12 434222 434398 -143848091 - AluJo SINE Alu -24 288 98 2074 104 20 17 chr12 434458 434755 -143847734 + AluSx SINE Alu 3 300 -12 764 149 0 0 chr12 434906 435020 -143847469 + FLAM_C SINE Alu 2 115 -28 2376 93 3 0 chr12 435141 435441 -143847048 - AluSp SINE Alu -12 301 1 1848 159 57 21 chr12 435499 435882 -143846607 + L1MB8 LINE L1 5782 6178 0 2154 264 50 57 chr12 436192 436336 -143846153 - L2 LINE L2 -29 3284 3141 1848 153 32 0 chr12 436336 436618 -143845871 - AluJb SINE Alu -10 302 12 2154 264 50 57 chr12 436618 437084 -143845405 - L2 LINE L2 -172 3141 2673 2191 117 0 0 chr12 437084 437367 -143845122 + AluSx SINE Alu 1 283 -29 2154 264 50 57 chr12 437367 437445 -143845044 - L2 LINE L2 -640 2673 2596 600 228 8 0 chr12 437445 437572 -143844917 + FLAM_C SINE Alu 2 129 -4 2154 264 50 57 chr12 437572 438038 -143844451 - L2 LINE L2 -717 2596 2148 2542 72 0 0 chr12 438202 438506 -143843983 - AluY SINE Alu -7 304 1 591 156 0 0 chr12 438985 439081 -143843408 - FLAM_A SINE Alu -42 100 5 2422 80 0 22 chr12 439343 439655 -143842834 + AluSg SINE Alu 1 305 -5 915 166 13 6 chr12 439943 440100 -143842389 - FRAM SINE Alu -8 158 1 2237 109 0 13 chr12 440133 440436 -143842053 + AluSg SINE Alu 1 299 -11 2082 122 0 0 chr12 440681 440967 -143841522 - AluSp SINE Alu -7 306 21 1786 156 14 0 chr12 440970 441265 -143841224 - AluSx SINE Alu -13 299 1 735 130 0 0 chr12 441365 441473 -143841016 - FLAM_A SINE Alu -11 131 24 2171 102 7 23 chr12 441596 441899 -143840590 - AluSx SINE Alu -14 298 1 886 142 0 22 chr12 441903 442037 -143840452 - FLAM_C SINE Alu -2 131 1 1228 144 13 57 chr12 442877 443106 -143839383 - MER20 DNA MER1_type 0 219 1 2568 54 0 0 chr12 443360 443657 -143838832 - AluY SINE Alu -14 297 1 2431 60 0 10 chr12 443659 443958 -143838531 - AluY SINE Alu -15 296 1 2327 93 3 3 chr12 444046 444347 -143838142 - AluSx SINE Alu -11 301 1 2108 129 0 0 chr12 444510 444796 -143837693 - AluSg SINE Alu -11 299 14 260 154 0 0 chr12 445475 445514 -143836975 + MER21B LTR ERV1 126 164 -699 237 196 39 0 chr12 445576 445627 -143836862 - ALR/Alpha Satellite centromeric -58 114 62 281 157 36 42 chr12 445693 445859 -143836630 + (TATAA)n Simple_repeat Simple_repeat 3 167 0 277 279 6 24 chr12 445862 446027 -143836462 + (TTA)n Simple_repeat Simple_repeat 3 164 0 2046 141 3 13 chr12 446050 446219 -143836270 - AluJo SINE Alu -10 302 136 2244 124 0 0 chr12 446219 446525 -143835964 - AluSq SINE Alu -7 306 1 2046 141 3 13 chr12 446525 446660 -143835829 - AluJo SINE Alu -176 136 1 1286 154 35 95 chr12 446681 446720 -143835769 - L1MB2 LINE L1 -42 6129 6089 483 90 0 0 chr12 446720 446798 -143835691 + (TG)n Simple_repeat Simple_repeat 2 79 0 351 0 0 0 chr12 446797 446836 -143835653 + (TA)n Simple_repeat Simple_repeat 1 39 0 * 1286 154 35 95 chr12 446798 446836 -143835653 - L1MB2 LINE L1 -82 6089 6050 1597 137 12 4 chr12 446836 447085 -143835404 - AluSx SINE Alu -12 300 50 1286 154 35 95 chr12 447085 447246 -143835243 - L1MB2 LINE L1 -121 6050 5953 1925 106 22 99 chr12 447246 447568 -143834921 + AluSx SINE Alu 2 298 -14 1286 154 35 95 chr12 447568 447703 -143834786 - L1MB2 LINE L1 -218 5953 5812 2099 104 46 0 chr12 448052 448332 -143834157 + AluSx SINE Alu 1 293 -19 2144 128 20 0 chr12 448456 448754 -143833735 + AluSx SINE Alu 1 304 -8 291 28 0 0 chr12 449101 449137 -143833352 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 1757 168 4 0 chr12 449138 449418 -143833071 - AluSx SINE Alu -31 281 1 744 294 127 17 chr12 449465 449757 -143832732 - LTR16A LTR ERVL -6 444 121 2417 151 34 5 chr12 452206 452617 -143829872 - L1MB3 LINE L1 -13 6170 5748 1285 204 0 13 chr12 452620 452855 -143829634 - AluJb SINE Alu -80 232 1 1643 104 79 156 chr12 452855 453056 -143829433 - L1M3 LINE L1 -509 5674 5459 1974 129 3 62 chr12 453056 453381 -143829108 - AluJb SINE Alu -6 306 1 1643 104 79 156 chr12 453381 453425 -143829064 - L1M3 LINE L1 -724 5459 5413 1981 166 0 3 chr12 453425 453738 -143828751 - AluJb SINE Alu 0 312 1 1643 104 79 156 chr12 453738 453923 -143828566 - L1M3 LINE L1 -770 5413 5294 1878 143 35 0 chr12 453923 454210 -143828279 - AluJb SINE Alu -15 297 1 1643 104 79 156 chr12 454210 454309 -143828180 - L1M3 LINE L1 -889 5294 5189 241 156 0 0 chr12 454311 454356 -143828133 - AluJo SINE Alu -3 299 255 1093 178 0 70 chr12 454356 454570 -143827919 - AluJo SINE Alu -113 199 1 1387 184 0 4 chr12 454570 454842 -143827647 - L1M3 LINE L1 -979 5167 4897 2183 127 0 6 chr12 454858 455172 -143827317 - AluJb SINE Alu 0 312 1 572 293 47 14 chr12 455424 455639 -143826850 - HERV16 LTR ERVL -2409 3076 2855 1647 298 82 24 chr12 455699 455785 -143826704 - HERV16 LTR ERVL -2430 2566 2486 2221 98 3 3 chr12 455785 456104 -143826385 - AluSg SINE Alu 0 310 1 1647 298 82 24 chr12 456104 456929 -143825560 - HERV16 LTR ERVL -2510 2486 1735 2192 88 0 4 chr12 456929 457203 -143825286 + AluSg SINE Alu 25 297 -13 1647 298 82 24 chr12 457203 457370 -143825119 - HERV16 LTR ERVL -3261 1735 1579 2129 104 10 3 chr12 457417 457714 -143824775 - AluSx SINE Alu -13 299 1 859 280 206 16 chr12 457769 458133 -143824356 - LTR16A LTR ERVL -6 444 12 2354 74 3 0 chr12 458172 458481 -143824008 + AluY SINE Alu 1 310 -1 250 265 84 0 chr12 458945 459028 -143823461 - MIR SINE MIR -66 196 107 262 263 41 67 chr12 459116 459310 -143823179 - L1ME4a LINE L1 -2 6119 5931 1876 144 7 0 chr12 459405 459696 -143822793 - AluJb SINE Alu -15 297 5 24 32 0 0 chr12 459709 459740 -143822749 + AT_rich Low_complexity Low_complexity 1 31 0 614 195 0 49 chr12 459740 459863 -143822626 - FLAM_A SINE Alu -13 120 4 2117 102 3 0 chr12 459916 460234 -143822255 - AluSp SINE Alu 0 319 1 952 194 0 0 chr12 460237 460397 -143822092 - FRAM SINE Alu -16 160 1 1990 97 48 3 chr12 460738 461027 -143821462 + AluSx SINE Alu 1 302 -10 1703 159 3 38 chr12 461151 461471 -143821018 - AluSq SINE Alu -4 309 1 1612 137 47 18 chr12 462700 462978 -143819511 + AluJo SINE Alu 1 286 -26 239 67 0 0 chr12 463528 463558 -143818931 + Alu SINE Alu 1 30 -273 * 405 92 105 53 chr12 463532 463608 -143818881 + AluJ/FRAM SINE Alu 218 297 -5 224 285 58 90 chr12 464159 464286 -143818203 + L2 LINE L2 1792 1922 -1392 2089 124 3 0 chr12 464286 464593 -143817896 - AluSx SINE Alu -4 308 1 224 285 58 90 chr12 464593 464777 -143817712 + L2 LINE L2 1922 2093 -1221 196 295 137 0 chr12 464800 464895 -143817594 + L2 LINE L2 2301 2408 -906 1805 163 0 3 chr12 465699 465981 -143816508 - AluJo SINE Alu -31 281 1 2195 45 10 35 chr12 466051 466339 -143816150 - AluY SINE Alu -4 307 27 895 98 16 0 chr12 466342 466465 -143816024 - AluSq/x SINE Alu -187 125 1 1422 169 32 52 chr12 467499 467807 -143814682 + AluJo SINE Alu 1 302 -10 189 0 0 0 chr12 468686 468707 -143813782 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 2012 113 0 36 chr12 468728 469037 -143813452 + AluSg SINE Alu 1 298 -12 669 311 94 26 chr12 469038 469179 -143813310 - L2 LINE L2 -13 3300 3170 2233 95 0 0 chr12 469179 469473 -143813016 + AluSx SINE Alu 1 294 -18 1767 112 4 7 chr12 469473 469741 -143812748 + AluSg SINE Alu 33 300 -10 669 311 94 26 chr12 469741 470187 -143812302 - L2 LINE L2 -142 3171 2681 23 54 0 0 chr12 472538 472575 -143809914 + AT_rich Low_complexity Low_complexity 1 37 0 1974 100 25 0 chr12 472718 472879 -143809610 - AluSq SINE Alu -25 288 116 216 0 0 0 chr12 472879 472903 -143809586 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 1974 100 25 0 chr12 472903 473022 -143809467 - AluSq SINE Alu -197 116 1 2203 102 0 0 chr12 473332 473626 -143808863 + AluSc SINE Alu 1 294 -15 236 289 96 0 chr12 473806 473889 -143808600 - MIR3 SINE MIR -3 205 115 267 305 238 7 chr12 474031 474182 -143808307 + MIR SINE MIR 2 187 -75 3940 168 58 3 chr12 474194 474938 -143807551 + L1MB7 LINE L1 5254 6038 -146 455 117 43 32 chr12 474944 475021 -143807468 + L1MB7 LINE L1 6090 6170 -14 1866 143 7 3 chr12 475021 475315 -143807174 - AluJb SINE Alu -17 295 1 455 117 43 32 chr12 475315 475331 -143807158 + L1MB7 LINE L1 6170 6184 0 1350 199 39 52 chr12 475515 475821 -143806668 - AluJo SINE Alu 0 302 1 2278 62 3 36 chr12 475831 476138 -143806351 - AluY SINE Alu -14 297 1 1477 131 84 29 chr12 476617 476891 -143805598 + AluJb SINE Alu 1 289 -23 21 36 0 0 chr12 476930 476958 -143805531 + AT_rich Low_complexity Low_complexity 1 28 0 1395 176 16 0 chr12 477494 477739 -143804750 + AluJo SINE Alu 49 297 -15 314 299 174 52 chr12 477834 477982 -143804507 - L2 LINE L2 -1037 2277 2148 2417 49 3 3 chr12 477982 478286 -143804203 - AluY SINE Alu -7 304 1 314 299 174 52 chr12 478286 478562 -143803927 - L2 LINE L2 -1166 2148 1801 201 237 43 32 chr12 478783 478876 -143803613 - L2 LINE L2 -1904 1410 1317 1840 148 3 3 chr12 479648 479945 -143802544 + AluJo SINE Alu 6 302 -10 390 176 22 22 chr12 480116 480207 -143802282 - L1MD1 LINE L1 -13 6229 6139 762 209 0 0 chr12 480861 480995 -143801494 - AluJo SINE Alu -178 134 1 666 215 15 0 chr12 481779 481909 -143800580 - AluJb SINE Alu -25 287 156 1066 146 158 62 chr12 481956 482095 -143800394 + AluJo SINE Alu 5 129 -183 2088 117 23 0 chr12 482095 482395 -143800094 + AluSx SINE Alu 1 307 -5 1066 146 158 62 chr12 482395 482495 -143799994 + AluJo SINE Alu 129 267 -45 706 97 167 0 chr12 482746 482860 -143799629 - AluJo SINE Alu -178 134 2 2275 48 44 0 chr12 484043 484338 -143798151 - AluY SINE Alu -2 309 2 411 313 55 46 chr12 486056 486273 -143796216 + MIR SINE MIR 20 238 -24 328 278 0 72 chr12 486339 486436 -143796053 + L1MC4 LINE L1 6613 6702 -1340 893 147 102 6 chr12 488544 488701 -143793788 - FRAM SINE Alu -5 171 1 189 268 110 24 chr12 488989 489071 -143793418 + MIR SINE MIR 76 164 -98 982 163 0 0 chr12 489095 489261 -143793228 - AluJb SINE Alu -17 295 130 255 31 0 0 chr12 489846 489878 -143792611 + (CGGGGG)n Simple_repeat Simple_repeat 3 34 0 203 128 51 0 chr12 489923 489962 -143792527 + (CGGG)n Simple_repeat Simple_repeat 2 42 0 47 92 0 0 chr12 490218 490349 -143792140 + GC_rich Low_complexity Low_complexity 1 131 0 21 36 0 0 chr12 490512 490540 -143791949 + GC_rich Low_complexity Low_complexity 1 28 0 213 207 32 36 chr12 491252 491314 -143791175 + MIR SINE MIR 90 150 -58 261 248 191 0 chr12 491783 491888 -143790601 + MIR3 SINE MIR 62 186 -22 251 305 23 62 chr12 491918 492095 -143790394 - L3 LINE CR1 -127 1450 1281 348 331 102 80 chr12 493389 493812 -143788677 - L2 LINE L2 -3 3269 2838 2010 102 10 14 chr12 494289 494584 -143787905 + AluSx SINE Alu 1 294 -18 187 154 39 96 chr12 495234 495286 -143787203 + L2 LINE L2 3262 3310 -3 22 35 0 0 chr12 496690 496719 -143785770 + AT_rich Low_complexity Low_complexity 1 29 0 388 202 0 36 chr12 496836 496920 -143785569 - L1ME3A LINE L1 -61 6109 6029 266 208 0 14 chr12 496952 497024 -143785465 - L1ME3A LINE L1 -200 5964 5894 21 0 0 0 chr12 497033 497054 -143785435 + AT_rich Low_complexity Low_complexity 1 21 0 542 161 11 0 chr12 497061 497148 -143785341 - FRAM SINE Alu -24 152 65 2005 131 7 0 chr12 497218 497523 -143784966 + AluSx SINE Alu 1 307 -5 337 347 127 14 chr12 499091 499304 -143783185 + MIR SINE MIR 20 256 -6 23 0 0 0 chr12 499743 499766 -143782723 + AT_rich Low_complexity Low_complexity 1 23 0 929 126 0 0 chr12 499766 499893 -143782596 - FLAM_C SINE Alu -6 127 1 1946 97 37 0 chr12 500677 500968 -143781521 - AluSx SINE Alu 0 303 3 1863 126 7 0 chr12 501048 501366 -143781123 + AluSg SINE Alu 1 320 0 2052 122 0 0 chr12 501366 501652 -143780837 + AluSx SINE Alu 1 286 -26 220 0 86 0 chr12 501656 501691 -143780798 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 28 48 0 0 chr12 501708 501750 -143780739 + AT_rich Low_complexity Low_complexity 1 42 0 383 271 45 8 chr12 501784 501917 -143780572 - L1MEd LINE L1 -5932 187 50 1327 206 3 47 chr12 502227 502388 -143780101 - AluJo SINE Alu -17 295 151 2195 59 38 0 chr12 502388 502678 -143779811 - AluY SINE Alu -10 301 1 1327 206 3 47 chr12 502678 502817 -143779672 - AluJo SINE Alu -161 151 8 1569 174 43 0 chr12 502918 503199 -143779290 - AluJo SINE Alu -9 303 11 541 245 55 70 chr12 503633 503833 -143778656 - L2 LINE L2 -3 3310 3114 1913 151 3 19 chr12 504479 504619 -143777870 + AluJo SINE Alu 1 142 -170 1744 141 41 0 chr12 504619 504909 -143777580 + AluJb SINE Alu 1 302 -10 1913 151 3 19 chr12 504909 505085 -143777404 + AluJo SINE Alu 142 312 0 921 229 62 33 chr12 505996 506240 -143776249 + MIR SINE MIR 6 256 -6 1478 152 0 84 chr12 506243 506565 -143775924 + AluJo SINE Alu 1 295 -17 500 281 20 7 chr12 506828 506981 -143775508 - MER117 DNA MER1_type -35 162 8 229 282 0 71 chr12 506957 507042 -143775447 - MIR3 SINE MIR -37 171 93 * 1860 174 0 10 chr12 507910 508214 -143774275 + AluJo SINE Alu 5 305 -7 716 187 8 22 chr12 509150 509284 -143773205 - FLAM_A SINE Alu 0 133 2 243 296 0 61 chr12 509508 509623 -143772866 - L2 LINE L2 -1313 2001 1894 2565 43 0 7 chr12 509854 510156 -143772333 - AluY SINE Alu -11 300 1 398 287 34 40 chr12 510222 510406 -143772083 + MIR3 SINE MIR 8 191 -17 481 217 104 0 chr12 512291 512406 -143770083 - MIR3 SINE MIR -9 199 73 927 218 0 0 chr12 512656 512826 -143769663 + FAM SINE Alu 1 170 -5 1791 193 0 7 chr12 512839 513139 -143769350 - AluJb SINE Alu -2 310 13 1887 157 0 4 chr12 513356 513637 -143768852 + AluJb SINE Alu 1 280 -32 340 318 121 8 chr12 513654 513786 -143768703 - MIR SINE MIR -40 222 76 376 198 128 116 chr12 514369 514541 -143767948 + MER5B DNA MER1_type 1 174 -4 22 0 0 0 chr12 514734 514756 -143767733 + AT_rich Low_complexity Low_complexity 1 22 0 281 210 32 16 chr12 515533 515595 -143766894 - MER5B DNA MER1_type 0 178 116 230 317 12 0 chr12 515596 515678 -143766811 + L1ME2 LINE L1 6072 6154 -10 6645 169 67 7 chr12 515704 516144 -143766345 + L1MCa LINE L1 30 442 -5984 2292 115 3 0 chr12 516144 516448 -143766041 - AluSg SINE Alu -5 305 1 6645 169 67 7 chr12 516448 517373 -143765116 + L1MCa LINE L1 442 1477 -4949 2388 119 0 0 chr12 517373 517683 -143764806 + AluSx SINE Alu 2 311 -1 1226 164 37 23 chr12 517694 517908 -143764581 + AluJb SINE Alu 82 298 -14 322 111 99 49 chr12 517911 517992 -143764497 + L1MCa LINE L1 1471 1555 -4871 232 162 0 0 chr12 518008 518045 -143764444 + Alu SINE Alu 11 47 -255 2436 111 95 16 chr12 518045 518546 -143763943 + L1MCa LINE L1 1560 2179 -4247 1097 184 17 63 chr12 518550 518789 -143763700 + AluJo SINE Alu 85 312 0 9995 210 49 17 chr12 518805 518907 -143763582 + L1MCa LINE L1 2197 2294 -4319 2821 58 29 16 chr12 518907 519283 -143763206 + L1PA8 LINE L1 5791 6171 -1 9995 210 49 17 chr12 519283 520396 -143762093 + L1MCa LINE L1 2294 3370 -3243 1844 149 35 3 chr12 520396 520684 -143761805 + AluJb SINE Alu 1 297 -15 9995 210 49 17 chr12 520684 521273 -143761216 + L1MCa LINE L1 3370 3938 -2675 2070 152 10 0 chr12 521273 521570 -143760919 - AluJb SINE Alu -12 300 1 9995 210 49 17 chr12 521570 521715 -143760774 + L1MCa LINE L1 3938 4077 -2536 2224 113 7 13 chr12 521715 522024 -143760465 + AluSg SINE Alu 1 307 -3 9995 210 49 17 chr12 522024 523480 -143759009 + L1MCa LINE L1 4077 5894 -719 2248 103 0 57 chr12 523929 524260 -143758229 + AluJb SINE Alu 1 312 0 574 290 122 9 chr12 524975 525196 -143757293 - MIR SINE MIR -3 259 14 431 292 260 0 chr12 525504 525658 -143756831 + MER91A DNA MER1_type 3 196 0 2439 139 107 61 chr12 526218 526267 -143756222 - L1MB5 LINE L1 -6 6168 6123 2226 109 3 0 chr12 526267 526560 -143755929 + AluSx SINE Alu 9 302 -10 2439 139 107 61 chr12 526560 526820 -143755669 - L1MB5 LINE L1 -51 6123 5877 1261 165 169 0 chr12 526820 527075 -143755414 - AluJo SINE Alu -3 299 2 2387 62 36 7 chr12 527080 527384 -143755105 - AluSp SINE Alu 0 313 1 2439 139 107 61 chr12 527384 527626 -143754863 - L1MB5 LINE L1 -300 5874 5584 300 234 13 65 chr12 529623 529700 -143752789 + L2 LINE L2 3241 3313 0 404 243 88 7 chr12 529721 529869 -143752620 - Charlie8 DNA MER1_type -2213 204 45 980 141 18 41 chr12 530076 530246 -143752243 - FRAM SINE Alu 0 166 1 2149 109 0 23 chr12 530807 531110 -143751379 - AluSx SINE Alu -10 302 7 1291 126 0 0 chr12 531372 531546 -143750943 + FRAM SINE Alu 1 170 -6 238 285 115 55 chr12 531609 531774 -143750715 + MER5B DNA MER1_type 1 175 -3 * 402 236 61 88 chr12 531630 531778 -143750711 - MER5A DNA MER1_type -32 157 14 1892 153 7 19 chr12 532689 532996 -143749493 - AluJo SINE Alu -5 307 5 212 296 0 0 chr12 533396 533450 -143749039 + MIR SINE MIR 91 144 -64 204 186 103 72 chr12 533667 533764 -143748725 + L2 LINE L2 1902 2001 -1313 2258 117 0 0 chr12 533774 534072 -143748417 + AluSx SINE Alu 1 298 -14 859 126 16 0 chr12 534116 534243 -143748246 + AluJb SINE Alu 177 305 -7 1022 173 6 0 chr12 534410 534572 -143747917 - AluSg/x SINE Alu -21 289 127 560 167 20 10 chr12 534572 534674 -143747815 + AluJo/FRAM SINE Alu 203 305 -7 2284 88 7 10 chr12 534836 535133 -143747356 - AluSq SINE Alu -17 296 1 441 272 190 6 chr12 536159 536317 -143746172 - MIR3 SINE MIR -2 206 20 2674 52 0 0 chr12 536568 536877 -143745612 - AluY SINE Alu -2 309 1 894 211 52 9 chr12 536884 537116 -143745373 - L1MC3 LINE L1 0 7785 7544 1351 183 0 45 chr12 538218 538464 -143744025 - AluJo SINE Alu -18 294 60 875 169 33 0 chr12 540773 540956 -143741533 - L1MB7 LINE L1 -60 6124 5936 1119 136 60 0 chr12 540966 541150 -143741339 - AluJ SINE Alu 0 312 118 211 256 45 34 chr12 541315 541491 -143740998 + CT-rich Low_complexity Low_complexity 1 178 0 204 227 64 29 chr12 541641 541813 -143740676 + CT-rich Low_complexity Low_complexity 1 178 0 239 249 40 40 chr12 542217 542394 -143740095 + CT-rich Low_complexity Low_complexity 1 177 0 3028 132 17 33 chr12 542749 543271 -143739218 - MER41A LTR ERV1 -40 514 1 729 148 16 16 chr12 543294 543416 -143739073 - AluJ SINE Alu -188 124 3 1527 158 129 21 chr12 543416 543722 -143738767 - L1MB7 LINE L1 -341 5824 5486 2696 43 0 0 chr12 543722 544026 -143738463 - AluY SINE Alu -7 304 1 1527 158 129 21 chr12 544026 544070 -143738419 - L1MB7 LINE L1 -679 5486 5448 969 211 59 62 chr12 544248 544276 -143738213 + MIR SINE MIR 8 35 -227 2201 111 37 0 chr12 544276 544574 -143737915 + AluSx SINE Alu 1 309 -3 969 211 59 62 chr12 544574 544704 -143737785 + MIR SINE MIR 35 167 -95 2101 80 10 47 chr12 544704 545026 -143737463 - AluSc SINE Alu 0 309 1 969 211 59 62 chr12 545026 545122 -143737367 + MIR SINE MIR 167 262 0 288 282 59 0 chr12 545166 545251 -143737238 - MIR SINE MIR -70 192 103 1113 239 104 51 chr12 545339 545385 -143737104 - L2 LINE L2 -54 3259 3217 2489 59 0 29 chr12 545385 545692 -143736797 + AluY SINE Alu 1 298 -13 1113 239 104 51 chr12 545692 546059 -143736430 - L2 LINE L2 -96 3217 2824 452 273 18 0 chr12 546079 546189 -143736300 + MER94 DNA DNA 3 114 -20 1579 252 159 42 chr12 546193 546867 -143735622 - L2 LINE L2 -513 2801 2049 501 281 96 11 chr12 547446 547624 -143734865 + MIR SINE MIR 12 204 -58 357 302 40 13 chr12 547662 547794 -143734695 - MIR SINE MIR -74 134 7 1084 167 81 102 chr12 547818 547952 -143734537 + MER2 DNA MER2_type 1 136 -209 1579 152 54 11 chr12 547952 548229 -143734260 - AluJo SINE Alu -23 289 1 1084 167 81 102 chr12 548229 548429 -143734060 + MER2 DNA MER2_type 136 328 -17 879 58 0 0 chr12 550219 550323 -143732166 + AluSg/x SINE Alu 180 283 -27 267 293 49 0 chr12 551261 551343 -143731146 - MER5C DNA MER1_type -201 123 38 2672 149 33 33 chr12 551700 552182 -143730307 + L1MB3 LINE L1 5650 6134 -49 1850 128 13 39 chr12 552182 552494 -143729995 + AluJb SINE Alu 1 304 -8 2672 149 33 33 chr12 552494 552533 -143729956 + L1MB3 LINE L1 6133 6171 -12 315 298 26 67 chr12 553083 553239 -143729250 + MIR SINE MIR 2 150 -65 2228 107 3 3 chr12 553310 553609 -143728880 + AluSg SINE Alu 1 299 -11 228 111 0 0 chr12 554169 554205 -143728284 + (A)n Simple_repeat Simple_repeat 1 36 0 600 254 57 43 chr12 554206 554415 -143728074 + MIR SINE MIR 50 261 -1 2317 91 0 0 chr12 554616 554938 -143727551 - AluSx SINE Alu 0 322 1 222 227 15 76 chr12 555714 555780 -143726709 + L2 LINE L2 3201 3262 -10 207 0 0 0 chr12 556198 556221 -143726268 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 186 43 0 0 chr12 556222 556245 -143726244 + (ATG)n Simple_repeat Simple_repeat 2 24 0 1524 179 100 0 chr12 556450 556610 -143725879 - AluJb SINE Alu -4 308 165 219 36 0 0 chr12 556610 556638 -143725851 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1524 179 100 0 chr12 556638 556757 -143725732 - AluJb SINE Alu -147 165 1 327 250 25 0 chr12 557644 557724 -143724765 + MIR SINE MIR 47 128 -134 22 0 0 0 chr12 557733 557755 -143724734 + AT_rich Low_complexity Low_complexity 1 22 0 1067 150 6 39 chr12 557739 557919 -143724570 - FAM SINE Alu -1 174 1 243 305 0 0 chr12 559169 559228 -143723261 + MIR SINE MIR 203 261 -1 411 299 71 0 chr12 560145 560272 -143722217 + MIR SINE MIR 81 216 -46 217 321 0 0 chr12 560712 560765 -143721724 + L2 LINE L2 3207 3259 -13 1577 187 47 17 chr12 560896 561195 -143721294 + AluJo SINE Alu 1 308 -4 414 288 153 6 chr12 561306 561469 -143721020 - MIR SINE MIR -10 252 66 751 145 0 83 chr12 561490 561635 -143720854 - FLAM_C SINE Alu 0 133 1 1762 211 106 12 chr12 561901 562327 -143720162 - MER31B LTR ERV1 0 466 1 223 269 137 58 chr12 563100 563290 -143719199 + MIR SINE MIR 14 214 -37 451 326 62 26 chr12 563624 563817 -143718672 + MIR3 SINE MIR 2 201 -7 28 0 0 0 chr12 566004 566032 -143716457 + AT_rich Low_complexity Low_complexity 1 28 0 791 197 0 0 chr12 566043 566175 -143716314 - FLAM_A SINE Alu 0 133 2 327 333 180 0 chr12 566245 566395 -143716094 - MIR SINE MIR -3 259 83 433 229 93 7 chr12 566483 566623 -143715866 - MER103 DNA DNA -3 163 12 1402 181 120 18 chr12 566810 567086 -143715403 - AluJo SINE Alu -8 304 1 191 345 0 8 chr12 567090 567183 -143715306 - MIR SINE MIR -63 145 57 21 0 0 0 chr12 567696 567717 -143714772 + AT_rich Low_complexity Low_complexity 1 21 0 1893 151 0 13 chr12 567804 568115 -143714374 + AluJb SINE Alu 1 307 -5 237 278 56 95 chr12 568225 568351 -143714138 - MIR3 SINE MIR -39 169 49 186 213 307 0 chr12 568478 568553 -143713936 - MIR SINE MIR -102 160 63 379 68 0 123 chr12 569087 569160 -143713329 - L1MB8 LINE L1 -6 6172 6109 1607 188 7 0 chr12 569160 569436 -143713053 + AluJo SINE Alu 1 278 -34 189 0 0 0 chr12 569442 569463 -143713026 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 518 331 69 23 chr12 569934 570261 -143712228 - L2 LINE L2 -181 3091 2727 2504 65 0 0 chr12 570261 570571 -143711918 - AluY SINE Alu 0 311 2 518 331 69 23 chr12 570571 570706 -143711783 - L2 LINE L2 -545 2727 2600 417 269 19 0 chr12 570777 570885 -143711604 + MIR3 SINE MIR 77 186 -22 213 108 0 0 chr12 571361 571398 -143711091 + (CACCC)n Simple_repeat Simple_repeat 3 39 0 619 209 9 0 chr12 573985 574100 -143708389 + MER91A DNA MER1_type 1 116 -80 255 245 21 21 chr12 574961 575055 -143707434 + G-rich Low_complexity Low_complexity 1 94 0 322 144 0 89 chr12 575056 575236 -143707253 + (GGAGA)n Simple_repeat Simple_repeat 4 167 0 185 155 0 99 chr12 575239 575381 -143707108 + GA-rich Low_complexity Low_complexity 4 131 0 420 301 11 19 chr12 575415 575633 -143706856 + G-rich Low_complexity Low_complexity 1 216 0 245 331 18 31 chr12 575792 575955 -143706534 + CT-rich Low_complexity Low_complexity 1 161 0 545 233 41 7 chr12 576175 576321 -143706168 - MIR3 SINE MIR -38 170 20 1227 219 35 13 chr12 576502 576812 -143705677 + L1MA4A LINE L1 5985 6301 -2 297 306 306 0 chr12 576895 577065 -143705424 + MIR SINE MIR 9 230 -32 * 338 298 173 42 chr12 577029 577220 -143705269 - MIR SINE MIR -12 250 35 1875 129 43 20 chr12 577947 578250 -143704239 + AluJo SINE Alu 1 310 -2 195 200 25 0 chr12 578261 578301 -143704188 - MIR3 SINE MIR -52 156 116 713 328 9 4 chr12 578546 578775 -143703714 + MIR SINE MIR 23 252 -10 307 351 26 9 chr12 578777 578891 -143703598 + MER91B DNA MER1_type 75 190 0 1005 191 0 0 chr12 579660 579838 -143702651 + AluJb SINE Alu 135 312 0 396 0 0 0 chr12 581612 581656 -143700833 + (CA)n Simple_repeat Simple_repeat 2 45 0 613 195 88 13 chr12 582266 582425 -143700064 - MIR SINE MIR -66 196 26 231 167 0 0 chr12 583051 583093 -143699396 + GA-rich Low_complexity Low_complexity 1 42 0 2932 182 30 79 chr12 583748 583828 -143698661 - L1MB7 LINE L1 -16 6168 6086 2737 23 0 0 chr12 583828 584137 -143698352 + AluY SINE Alu 1 309 -2 2932 182 30 79 chr12 584137 584215 -143698274 - L1MB7 LINE L1 -98 6086 6006 2216 128 0 0 chr12 584215 584527 -143697962 + AluSx SINE Alu 1 312 0 2932 182 30 79 chr12 584527 585092 -143697397 - L1MB7 LINE L1 -178 6006 5492 2397 84 3 0 chr12 585092 585401 -143697088 - AluY SINE Alu 0 311 2 2932 182 30 79 chr12 585401 585559 -143696930 - L1MB7 LINE L1 -692 5492 5328 489 329 0 13 chr12 585622 585780 -143696709 - MIR3 SINE MIR -14 194 39 315 315 113 13 chr12 586232 586413 -143696076 - MIR SINE MIR -41 221 19 344 280 192 0 chr12 588211 588336 -143694153 - L2 LINE L2 -1 3271 3123 189 289 78 56 chr12 588885 588975 -143693514 + MIR SINE MIR 96 187 -75 426 269 47 23 chr12 589679 589839 -143692650 - MIR SINE MIR -56 206 41 272 290 187 0 chr12 590427 590534 -143691955 - MIR SINE MIR -108 154 28 182 370 40 0 chr12 592943 593043 -143689446 - L2 LINE L2 -30 3242 3139 359 234 0 26 chr12 594119 594196 -143688293 - MER5A DNA MER1_type -99 90 16 242 285 153 7 chr12 595558 595695 -143686794 + MIR3 SINE MIR 34 190 -18 296 311 10 19 chr12 595912 596015 -143686474 - MER91A DNA MER1_type -29 167 66 339 157 0 0 chr12 596794 596864 -143685625 + (TGGA)n Simple_repeat Simple_repeat 4 73 0 190 103 0 0 chr12 596914 596943 -143685546 + MIR SINE MIR 96 124 -84 2030 134 3 10 chr12 597043 597348 -143685141 + AluSx SINE Alu 1 303 -9 399 251 36 36 chr12 597358 597553 -143684936 - Charlie7 DNA MER1_type 0 2612 2418 23 0 0 0 chr12 598196 598219 -143684270 + GC_rich Low_complexity Low_complexity 1 23 0 185 341 73 49 chr12 599582 599705 -143682784 + L3b LINE CR1 1439 1564 -19 594 301 30 0 chr12 601961 602127 -143680362 - MIR SINE MIR -12 250 80 1318 92 0 0 chr12 602170 602343 -143680146 - AluSq SINE Alu -7 306 134 2304 82 0 3 chr12 602343 602646 -143679843 - AluSx SINE Alu -10 302 1 1024 171 0 17 chr12 602747 602928 -143679561 + AluSg/x SINE Alu 135 312 0 1978 94 45 3 chr12 603271 603559 -143678930 + AluSq SINE Alu 1 300 -13 562 103 26 0 chr12 603571 603672 -143678817 + AluSg/x SINE Alu 209 311 0 2013 212 23 13 chr12 603699 604091 -143678398 + MSTD LTR MaLR 1 396 0 828 214 12 0 chr12 605803 605976 -143676513 - AluJo SINE Alu -1 311 137 1668 150 17 0 chr12 606425 606725 -143675764 + MER47A DNA MER2_type 58 362 -4 234 62 0 0 chr12 606736 606768 -143675721 + (TA)n Simple_repeat Simple_repeat 2 33 0 634 99 0 0 chr12 606770 606851 -143675638 - AluSg/x SINE Alu -69 243 163 319 281 174 0 chr12 606852 606971 -143675518 - MIR SINE MIR -114 148 9 356 224 0 0 chr12 606971 607038 -143675451 + MER5A DNA MER1_type 1 67 -122 862 141 7 7 chr12 607041 607176 -143675313 - AluJo SINE Alu -177 135 1 22 0 0 0 chr12 607188 607210 -143675279 + AT_rich Low_complexity Low_complexity 1 22 0 1537 191 113 33 chr12 607252 607677 -143674812 + LTR2B LTR ERV1 32 490 0 1543 162 19 15 chr12 607678 607937 -143674552 - AluJo SINE Alu -52 260 1 251 303 53 0 chr12 607938 608014 -143674475 - MIR SINE MIR -171 91 12 1037 216 119 113 chr12 608725 608802 -143673687 + MER4C LTR ERV1 1 76 -389 352 0 20 20 chr12 608802 608851 -143673638 + (CAAAA)n Simple_repeat Simple_repeat 5 53 0 1037 216 119 113 chr12 608851 609235 -143673254 + MER4C LTR ERV1 76 465 0 189 74 0 0 chr12 609588 609615 -143672874 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 2164 118 3 0 chr12 609631 609919 -143672570 + AluSx SINE Alu 7 295 -17 768 178 0 0 chr12 610118 610298 -143672191 + (TG)n Simple_repeat Simple_repeat 1 180 0 738 167 0 0 chr12 610351 610531 -143671958 + (TG)n Simple_repeat Simple_repeat 1 180 0 304 220 89 48 chr12 611337 611490 -143670999 - MIR SINE MIR -59 149 1 207 271 136 0 chr12 611509 611568 -143670921 + L2 LINE L2 3206 3272 0 385 296 0 0 chr12 611570 611746 -143670743 + (CATG)n Simple_repeat Simple_repeat 2 177 0 358 299 0 0 chr12 611809 611986 -143670503 + (CATG)n Simple_repeat Simple_repeat 4 180 0 * 401 301 0 0 chr12 611948 612177 -143670312 + (TGAA)n Simple_repeat Simple_repeat 1 229 0 303 322 0 0 chr12 612220 612397 -143670092 + (TGAA)n Simple_repeat Simple_repeat 2 178 0 * 391 299 0 0 chr12 612280 612457 -143670032 + (CATG)n Simple_repeat Simple_repeat 4 180 0 251 233 192 17 chr12 612963 613083 -143669406 + MIR SINE MIR 18 158 -104 234 270 95 7 chr12 613115 613252 -143669237 + L1ME4a LINE L1 5946 6094 -27 1085 181 42 23 chr12 613457 613673 -143668816 + AluJo SINE Alu 1 220 -92 328 100 0 0 chr12 613673 613723 -143668766 + AluSq/x SINE Alu 86 135 -168 2175 122 3 0 chr12 613723 614026 -143668463 + AluSx SINE Alu 1 304 -8 2023 93 41 7 chr12 614052 614342 -143668147 + AluSg SINE Alu 5 304 -6 250 53 0 126 chr12 614674 614769 -143667720 + (GGGAA)n Simple_repeat Simple_repeat 2 84 0 184 214 0 24 chr12 614899 614941 -143667548 - L2 LINE L2 -1 3312 3272 275 146 21 0 chr12 615239 615287 -143667202 - MER45 DNA AcHobo -14 1567 1519 375 219 0 0 chr12 615331 615413 -143667076 - MER45 DNA AcHobo -918 122 41 324 289 79 9 chr12 615836 615950 -143666539 - MIR3 SINE MIR -53 155 34 183 275 242 17 chr12 617012 617132 -143665357 + L2 LINE L2 3036 3182 -90 209 117 96 0 chr12 617353 617447 -143665042 + GA-rich Low_complexity Low_complexity 2 104 0 555 295 161 9 chr12 617621 617838 -143664651 - MIR SINE MIR 0 262 13 463 266 47 107 chr12 618035 618399 -143664090 + L1MC4a LINE L1 5463 5804 -317 305 249 102 51 chr12 618446 618643 -143663846 + L1MC4a LINE L1 5789 5995 -1813 336 127 18 0 chr12 618734 618789 -143663700 - U7 snRNA snRNA -7 56 1 264 305 78 31 chr12 618899 619027 -143663462 - L2 LINE L2 -1 3271 3138 582 131 9 47 chr12 619303 619410 -143663079 - AluJo SINE Alu -178 134 32 506 300 105 5 chr12 621274 621464 -143661025 + MIR SINE MIR 16 224 -38 2255 97 3 10 chr12 621618 621916 -143660573 + AluSq SINE Alu 1 296 -17 343 321 93 50 chr12 621996 622339 -143660150 + L1MC1 LINE L1 3014 3371 -2775 1813 126 16 0 chr12 622663 622918 -143659571 + AluJb SINE Alu 29 287 -25 435 155 0 0 chr12 622918 623002 -143659487 + GA-rich Low_complexity Low_complexity 1 84 0 204 40 0 0 chr12 623020 623045 -143659444 + (CAG)n Simple_repeat Simple_repeat 2 26 0 4645 190 26 68 chr12 623124 623556 -143658933 + L1MC1 LINE L1 3973 4422 -1911 304 50 0 100 chr12 623556 623616 -143658873 + L1MA4A LINE L1 6244 6297 -6 4645 190 26 68 chr12 623616 623705 -143658784 + L1MC1 LINE L1 4422 4513 -1820 741 176 0 63 chr12 623705 623847 -143658642 + FLAM_C SINE Alu 1 133 0 4645 190 26 68 chr12 623847 624692 -143657797 + L1MC1 LINE L1 4513 5236 -1097 2035 98 79 0 chr12 624692 624969 -143657520 + AluSp SINE Alu 1 299 -14 4645 190 26 68 chr12 624969 625461 -143657028 + L1MC1 LINE L1 5236 5747 -586 1504 189 17 26 chr12 625461 625759 -143656730 + L1MC1 LINE L1 6035 6333 0 1999 142 7 7 chr12 625840 626142 -143656347 + AluJb SINE Alu 1 302 -10 732 265 33 0 chr12 626406 626587 -143655902 + MIR SINE MIR 76 262 0 365 205 71 54 chr12 627812 627908 -143654581 + L1ME4a LINE L1 5986 6086 -35 2067 131 3 0 chr12 627908 628198 -143654291 - AluJb SINE Alu -21 291 1 365 205 71 54 chr12 628198 628213 -143654276 + L1ME4a LINE L1 6086 6099 -22 1982 107 43 7 chr12 628298 628578 -143653911 + AluSq SINE Alu 1 290 -23 312 292 111 21 chr12 628742 628886 -143653603 - MIR SINE MIR -76 186 30 2053 115 10 13 chr12 629470 629775 -143652714 + AluSx SINE Alu 1 304 -8 414 0 0 0 chr12 629852 629898 -143652591 + (TG)n Simple_repeat Simple_repeat 2 47 0 829 181 18 41 chr12 629898 630058 -143652431 - AluJb SINE Alu -29 283 126 32 43 0 0 chr12 630415 630461 -143652028 + AT_rich Low_complexity Low_complexity 1 46 0 2467 61 3 10 chr12 630463 630774 -143651715 + AluY SINE Alu 1 309 -2 2127 112 0 44 chr12 630779 631100 -143651389 + AluSx SINE Alu 1 307 -5 4023 171 105 20 chr12 631350 632027 -143650462 - L1MB8 LINE L1 -15 6163 5545 1787 179 3 16 chr12 632027 632334 -143650155 - AluJo SINE Alu -9 303 1 4023 171 105 20 chr12 632334 632856 -143649633 - L1MB8 LINE L1 -633 5545 5069 2249 133 0 0 chr12 632856 633158 -143649331 - AluSx SINE Alu -10 302 1 4023 171 105 20 chr12 633158 633439 -143649050 - L1MB8 LINE L1 -1109 5069 4542 2459 75 0 0 chr12 633553 633860 -143648629 + AluSx SINE Alu 1 307 -5 292 287 49 25 chr12 633973 634095 -143648394 + HAL1 LINE L1 338 462 -2045 403 276 60 0 chr12 634095 634211 -143648278 + MER5C DNA MER1_type 1 123 -201 182 231 0 0 chr12 634372 634411 -143648078 + MER5C DNA MER1_type 286 324 0 234 306 47 0 chr12 634467 634552 -143647937 + HAL1 LINE L1 549 637 -1870 978 120 56 0 chr12 634624 634766 -143647723 + FRAM SINE Alu 14 163 -13 226 298 0 50 chr12 634781 634902 -143647587 + HAL1 LINE L1 684 798 -1709 349 222 228 26 chr12 635032 635221 -143647268 + HAL1 LINE L1 795 1021 -1486 32 26 0 0 chr12 635227 635266 -143647223 + AT_rich Low_complexity Low_complexity 1 39 0 687 121 0 0 chr12 635269 635368 -143647121 - AluJ/FLAM SINE Alu -212 100 2 1089 271 155 25 chr12 635382 636009 -143646480 + HAL1 LINE L1 1032 1739 -768 237 239 15 0 chr12 636243 636310 -143646179 + MLT1K LTR MaLR 511 578 -10 213 194 311 19 chr12 636324 636427 -143646062 - MER5A DNA MER1_type -13 176 44 * 422 258 200 0 chr12 636339 636459 -143646030 + MER5A DNA MER1_type 46 189 0 267 31 0 0 chr12 636549 636581 -143645908 + (ATG)n Simple_repeat Simple_repeat 3 34 0 1068 228 57 24 chr12 637559 637805 -143644684 - MIR SINE MIR 0 262 9 341 233 105 12 chr12 638057 638143 -143644346 + MIR3 SINE MIR 74 167 -41 2608 58 0 7 chr12 638687 638997 -143643492 + AluY SINE Alu 3 310 -1 1041 99 0 21 chr12 639019 639161 -143643328 + AluJb SINE Alu 163 301 -11 183 284 119 64 chr12 639169 639278 -143643211 - MIR3 SINE MIR -93 115 1 2441 92 0 3 chr12 639924 640227 -143642262 - AluSq SINE Alu -6 307 6 2004 138 33 13 chr12 640359 640833 -143641656 - AluSx SINE Alu 0 312 1 206 269 0 19 chr12 640858 640910 -143641579 - MIR3 SINE MIR -23 185 135 1079 262 120 18 chr12 641053 641495 -143640994 + MLT1J LTR MaLR 18 504 -7 231 259 259 19 chr12 642168 642330 -143640159 - MIR3 SINE MIR -3 205 5 2146 132 0 3 chr12 642523 642819 -143639670 + AluSx SINE Alu 1 295 -17 2589 64 0 6 chr12 642821 643134 -143639355 + AluY SINE Alu 1 311 0 191 244 56 78 chr12 643228 643318 -143639171 - MIR SINE MIR -102 160 73 2261 92 3 3 chr12 644516 644800 -143637689 + AluSp SINE Alu 13 296 -17 2406 75 7 0 chr12 646121 646413 -143636076 + AluSx SINE Alu 1 294 -18 351 254 6 51 chr12 647410 647587 -143634902 + G-rich Low_complexity Low_complexity 2 170 0 331 327 19 9 chr12 647655 647762 -143634727 - MIR3 SINE MIR -6 202 95 594 235 95 34 chr12 648976 649155 -143633334 + MIR SINE MIR 3 192 -70 210 339 0 0 chr12 649475 649531 -143632958 + MIR3 SINE MIR 104 159 -49 2249 106 0 0 chr12 649815 650127 -143632362 - AluSx SINE Alu 0 312 1 1983 162 6 19 chr12 650365 650730 -143631759 + AluJo SINE Alu 3 363 0 2337 105 7 0 chr12 650738 651043 -143631446 + AluSc SINE Alu 3 309 0 2044 122 31 0 chr12 651049 651337 -143631152 + AluSg1 SINE Alu 1 297 -12 2418 67 40 3 chr12 651337 651637 -143630852 + AluY SINE Alu 1 311 0 25 0 0 0 chr12 651979 652004 -143630485 + AT_rich Low_complexity Low_complexity 1 25 0 2167 140 0 6 chr12 652949 653263 -143629226 + AluJo SINE Alu 1 312 0 202 281 0 31 chr12 653648 653712 -143628777 - L2 LINE L2 -100 3213 3152 2312 98 3 3 chr12 653724 654021 -143628468 + AluSx SINE Alu 1 297 -15 2245 99 24 0 chr12 654024 654318 -143628171 + AluSq SINE Alu 1 301 -12 356 326 96 53 chr12 654370 654783 -143627706 - L2 LINE L2 -237 3035 2608 767 223 55 103 chr12 655812 656006 -143626483 + MIR SINE MIR 3 182 -80 1743 193 3 0 chr12 656006 656291 -143626198 + AluJo SINE Alu 6 291 -21 767 223 55 103 chr12 656291 656369 -143626120 + MIR SINE MIR 182 262 0 226 255 32 43 chr12 656654 656748 -143625741 - L2 LINE L2 -211 3061 2969 1023 133 60 0 chr12 656996 657147 -143625342 + AluSg/x SINE Alu 136 295 -15 4014 141 14 14 chr12 657739 658372 -143624117 + MER41B LTR ERV1 1 633 -2 741 187 21 67 chr12 658386 658578 -143623911 - MIR SINE MIR -62 146 8 1279 129 58 45 chr12 658702 658806 -143623683 - MER30 DNA MER1_type 0 230 129 2308 89 24 0 chr12 658806 659097 -143623392 + AluSp SINE Alu 1 298 -15 234 0 0 0 chr12 659097 659123 -143623366 + (TA)n Simple_repeat Simple_repeat 2 27 0 1279 129 58 45 chr12 659123 659241 -143623248 - MER30 DNA MER1_type -100 130 4 2214 102 3 10 chr12 659535 659562 -143622927 - AluSx SINE Alu 0 312 286 262 0 0 0 chr12 659562 659591 -143622898 + (TTTTG)n Simple_repeat Simple_repeat 2 125 0 2214 102 3 10 chr12 659591 659877 -143622612 - AluSx SINE Alu -26 286 1 2333 61 3 10 chr12 660544 660861 -143621628 - AluSc SINE Alu 0 309 1 208 263 23 128 chr12 661611 661744 -143620745 + L2 LINE L2 139 257 -3057 2078 122 7 7 chr12 662416 662711 -143619778 + AluSx SINE Alu 1 295 -17 2019 141 14 0 chr12 662734 663024 -143619465 + AluSx SINE Alu 1 294 -18 2175 95 44 3 chr12 663463 663759 -143618730 - AluSg SINE Alu -2 308 1 619 204 0 53 chr12 664111 664243 -143618246 - FLAM_C SINE Alu -16 127 3 2349 94 10 0 chr12 664254 664551 -143617938 - AluSq SINE Alu -13 300 1 2581 187 20 25 chr12 664580 664993 -143617496 + L1MB4 LINE L1 4789 5202 -978 2179 110 0 7 chr12 664993 665293 -143617196 + AluSx SINE Alu 1 298 -14 2372 106 3 0 chr12 665295 665641 -143616848 + AluSp SINE Alu 1 313 0 2581 187 20 25 chr12 665641 666269 -143616220 + L1MB4 LINE L1 5203 5830 -350 2369 96 0 0 chr12 666269 666560 -143615929 + AluSg SINE Alu 1 291 -19 2390 100 0 3 chr12 666560 666871 -143615618 + AluSg SINE Alu 1 310 0 2617 47 0 0 chr12 667615 667915 -143614574 - AluY SINE Alu -11 300 1 351 265 17 0 chr12 668108 668225 -143614264 + L1MC4a LINE L1 5753 5871 -1937 842 195 185 25 chr12 668472 668672 -143613817 - MIR SINE MIR -23 239 8 270 314 10 39 chr12 669452 669554 -143612935 - MIR3 SINE MIR -2 206 108 1437 156 117 12 chr12 669718 669998 -143612491 - AluSx SINE Alu 0 307 1 2438 49 0 16 chr12 670759 671063 -143611426 + AluY SINE Alu 1 299 -12 407 271 62 16 chr12 671236 671365 -143611124 + MIR SINE MIR 20 154 -108 2033 89 11 0 chr12 671458 671727 -143610762 - AluSq SINE Alu -40 273 2 266 192 29 70 chr12 672053 672225 -143610264 + (CCCG)n Simple_repeat Simple_repeat 4 168 0 250 181 157 72 chr12 672721 672804 -143609685 - MIR SINE MIR -70 192 103 180 278 150 38 chr12 673094 673227 -143609262 + L2 LINE L2 3121 3268 -45 284 236 0 0 chr12 673359 673414 -143609075 - MIR SINE MIR 0 262 208 453 194 218 8 chr12 673422 673546 -143608943 - MER5A DNA MER1_type 0 189 40 419 205 41 0 chr12 673554 673649 -143608840 - MIR SINE MIR -50 212 114 269 250 27 71 chr12 674130 674242 -143608247 - L2 LINE L2 -613 2701 2595 523 269 0 8 chr12 674413 674532 -143607957 + MIR SINE MIR 33 150 -112 282 243 96 64 chr12 674680 674853 -143607636 - MIR SINE MIR -62 146 19 726 185 147 13 chr12 676906 677063 -143605426 - MER5A DNA MER1_type -11 178 1 251 267 158 0 chr12 677087 677207 -143605282 + MIR SINE MIR 47 185 -77 2240 95 3 17 chr12 677282 677578 -143604911 - AluSq SINE Alu -21 292 1 198 268 0 0 chr12 677664 677705 -143604784 + MIR SINE MIR 107 147 -61 214 392 75 22 chr12 677945 678172 -143604317 + L2 LINE L2 2807 3045 -227 513 47 0 0 chr12 678172 678236 -143604253 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 2514 72 13 0 chr12 678243 678547 -143603942 - AluSx SINE Alu -4 308 1 325 175 16 16 chr12 678690 678753 -143603736 + L1MC4 LINE L1 6641 6703 -1339 808 222 124 29 chr12 678825 679275 -143603214 - L1ME4a LINE L1 -1 6120 5628 1788 133 9 76 chr12 679281 679598 -143602891 - AluSx SINE Alu -15 297 2 1430 134 28 12 chr12 679618 679872 -143602617 + AluSg SINE Alu 1 258 -52 1965 118 61 0 chr12 680029 680309 -143602180 + AluSc SINE Alu 13 309 0 1820 158 0 17 chr12 680342 680640 -143601849 - AluJb SINE Alu -8 304 12 207 96 58 0 chr12 681563 681615 -143600874 + (TA)n Simple_repeat Simple_repeat 2 56 0 5477 184 48 50 chr12 681636 681893 -143600596 - L1MC1 LINE L1 -6 6607 6351 935 18 0 9 chr12 681893 682007 -143600482 + (CATAG)n Simple_repeat Simple_repeat 2 114 0 5477 184 48 50 chr12 682007 682349 -143600140 - L1MC1 LINE L1 -262 6351 6010 2461 89 0 19 chr12 682349 682665 -143599824 + AluSx SINE Alu 1 310 -2 5477 184 48 50 chr12 682665 683044 -143599445 - L1MC1 LINE L1 -603 6010 5632 2345 93 0 3 chr12 683044 683346 -143599143 - AluSg SINE Alu -9 301 1 5477 184 48 50 chr12 683346 683891 -143598598 - L1MC1 LINE L1 -981 5632 5088 2356 95 0 0 chr12 683891 684186 -143598303 - AluSg SINE Alu -15 295 1 5477 184 48 50 chr12 684186 684269 -143598220 - L1MC1 LINE L1 -1525 5088 5006 2213 93 0 4 chr12 684269 684571 -143597918 - AluSc SINE Alu 0 302 2 5477 184 48 50 chr12 684571 684724 -143597765 - L1MC1 LINE L1 -1607 5006 4854 2348 102 0 0 chr12 684724 685018 -143597471 - AluSx SINE Alu -12 300 7 5477 184 48 50 chr12 685018 685734 -143596755 - L1MC1 LINE L1 -1759 4854 4131 2235 120 10 0 chr12 685734 686042 -143596447 - AluSp SINE Alu -1 312 2 5477 184 48 50 chr12 686042 686112 -143596377 - L1MC1 LINE L1 -2482 4131 4062 2389 87 13 0 chr12 686112 686412 -143596077 - AluSp SINE Alu -9 304 1 1620 186 14 24 chr12 686442 686738 -143595751 - AluJo SINE Alu -19 293 1 596 217 38 11 chr12 686739 686922 -143595567 - L1MC1 LINE L1 -3947 2479 2354 8249 160 102 11 chr12 687148 688840 -143593649 + L1MCa LINE L1 7 1853 -4573 539 167 0 0 chr12 688840 688924 -143593565 + AluS SINE Alu 1 84 -229 507 186 24 8 chr12 688925 689049 -143593440 + L1MCa LINE L1 1841 1966 -4460 2504 90 3 0 chr12 689057 689369 -143593120 + AluSq SINE Alu 1 313 0 212 186 23 0 chr12 689519 689562 -143592927 + G-rich Low_complexity Low_complexity 5 48 0 205 255 0 61 chr12 689574 689672 -143592817 + C-rich Low_complexity Low_complexity 2 93 0 301 207 0 17 chr12 690169 690227 -143592262 + L1MCa LINE L1 2533 2589 -4018 1578 193 14 24 chr12 690228 690524 -143591965 + AluJo SINE Alu 1 293 -19 2265 100 13 3 chr12 690554 690854 -143591635 + AluSx SINE Alu 1 303 -9 241 244 67 25 chr12 690855 690974 -143591515 + L1M LINE L1 5301 5424 -738 1949 159 3 10 chr12 691484 691779 -143590710 - AluJo SINE Alu -19 293 1 1103 287 58 16 chr12 692245 692625 -143589864 - L2 LINE L2 0 3313 2918 225 65 0 0 chr12 692801 692832 -143589657 + (GA)n Simple_repeat Simple_repeat 2 32 0 184 179 0 0 chr12 695620 695648 -143586841 - MIR SINE MIR -28 234 207 1131 74 0 0 chr12 695648 695783 -143586706 - AluSg/x SINE Alu -18 292 158 794 177 0 0 chr12 695968 696092 -143586397 + FLAM_C SINE Alu 1 124 -9 1736 156 7 42 chr12 696098 696406 -143586083 + AluJo SINE Alu 1 297 -15 1913 154 0 35 chr12 696837 697156 -143585333 - AluJb SINE Alu -4 308 1 954 197 13 70 chr12 697157 697385 -143585104 - MER58A DNA MER1_type -9 215 1 442 285 82 13 chr12 697904 698062 -143584427 + MIR3 SINE MIR 34 202 -6 2033 115 41 7 chr12 698073 698368 -143584121 + AluSx SINE Alu 1 305 -7 398 274 8 0 chr12 698824 698941 -143583548 + MER3 DNA MER1_type 46 163 -46 957 169 12 24 chr12 698953 699119 -143583370 - FRAM SINE Alu -2 164 1 2285 111 0 13 chr12 699136 699443 -143583046 - AluSx SINE Alu -9 303 1 2377 71 3 7 chr12 699771 700066 -143582423 + AluSg SINE Alu 1 294 -16 2008 98 3 57 chr12 700480 700777 -143581712 + AluSq SINE Alu 1 281 -32 834 106 0 0 chr12 700783 700906 -143581583 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 1598 187 91 59 chr12 701015 701245 -143581244 + L1MC5 LINE L1 7271 7492 -469 1498 167 33 60 chr12 701245 701380 -143581109 + AluJo SINE Alu 3 140 -172 2158 130 3 0 chr12 701380 701672 -143580817 + AluSq SINE Alu 1 293 -20 1498 167 33 60 chr12 701672 701835 -143580654 + AluJo SINE Alu 140 293 -19 1598 187 91 59 chr12 701835 702005 -143580484 + L1MC5 LINE L1 7492 7655 -306 2424 87 3 0 chr12 702005 702314 -143580175 - AluY SINE Alu -1 310 1 1598 187 91 59 chr12 702314 702537 -143579952 + L1MC5 LINE L1 7655 7915 -46 372 266 222 11 chr12 703011 703190 -143579299 - MIR SINE MIR -46 216 6 192 77 0 0 chr12 703219 703245 -143579244 + (CA)n Simple_repeat Simple_repeat 1 26 0 417 245 125 87 chr12 703308 703353 -143579136 + MIR SINE MIR 35 77 -185 279 0 0 0 chr12 703353 703384 -143579105 + (TG)n Simple_repeat Simple_repeat 1 31 0 1448 137 34 0 chr12 703385 703619 -143578870 - L1MC1 LINE L1 -3 6330 6089 417 245 125 87 chr12 703619 703779 -143578710 + MIR SINE MIR 76 250 -12 2501 78 0 0 chr12 703944 704240 -143578249 + AluSq SINE Alu 1 296 -17 245 227 27 80 chr12 705092 705167 -143577322 + MIR SINE MIR 80 150 -112 353 222 57 45 chr12 705194 705296 -143577193 - L1ME4a LINE L1 0 6121 6015 1452 153 122 49 chr12 705296 705583 -143576906 + AluJb SINE Alu 1 308 -4 353 222 57 45 chr12 705583 705656 -143576833 - L1ME4a LINE L1 -106 6015 5944 2256 119 7 0 chr12 705662 705972 -143576517 + AluSx SINE Alu 1 312 0 635 188 132 0 chr12 706037 706181 -143576308 - MER45A DNA AcHobo -14 164 2 645 241 86 26 chr12 706198 706430 -143576059 - MIR SINE MIR 0 262 17 1307 80 0 0 chr12 706458 706620 -143575869 - AluY SINE Alu -14 297 136 386 241 52 43 chr12 706635 706751 -143575738 - L1ME4a LINE L1 -169 5952 5836 252 0 0 0 chr12 707134 707162 -143575327 + (CA)n Simple_repeat Simple_repeat 2 29 0 258 286 39 0 chr12 707278 707355 -143575134 + MIR SINE MIR 87 166 -96 458 138 21 28 chr12 707921 708156 -143574333 + AluJo SINE Alu 1 301 -11 2227 125 0 19 chr12 708156 708475 -143574014 + AluSp SINE Alu 1 313 0 2465 91 3 0 chr12 708485 708792 -143573697 + AluSg SINE Alu 1 308 -2 240 271 73 0 chr12 709685 709781 -143572708 - L1ME4a LINE L1 -4 6117 6015 487 125 0 0 chr12 710146 710226 -143572263 + FLAM_A SINE Alu 63 142 0 31 44 0 0 chr12 710228 710273 -143572216 + AT_rich Low_complexity Low_complexity 1 45 0 1634 114 57 0 chr12 710410 710638 -143571851 + AluSq SINE Alu 64 304 -9 732 242 47 30 chr12 710642 710939 -143571550 + L1ME LINE L1 5305 5606 -556 2226 69 3 49 chr12 710950 711255 -143571234 + AluY SINE Alu 1 291 -20 1310 93 0 0 chr12 711255 711417 -143571072 + AluSg/x SINE Alu 132 293 -17 235 357 0 0 chr12 711429 711541 -143570948 + L1ME LINE L1 5746 5857 -313 1109 287 41 53 chr12 711727 711762 -143570727 + MLT1I LTR MaLR 1 35 -374 2233 99 3 13 chr12 711762 712065 -143570424 + AluSc SINE Alu 1 300 -9 1109 287 41 53 chr12 712065 712443 -143570046 + MLT1I LTR MaLR 35 409 0 2463 94 0 0 chr12 712614 712923 -143569566 + AluSx SINE Alu 1 309 -3 2316 98 3 0 chr12 713656 713953 -143568536 + AluSp SINE Alu 1 298 -15 234 0 0 0 chr12 714121 714147 -143568342 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 426 233 41 48 chr12 714296 714442 -143568047 - MER103 DNA DNA -18 148 4 748 148 9 9 chr12 715048 715163 -143567326 + FLAM_C SINE Alu 1 115 -18 251 71 24 0 chr12 715163 715205 -143567284 + (CA)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr12 715386 715408 -143567081 + AT_rich Low_complexity Low_complexity 1 22 0 426 207 0 0 chr12 715511 715598 -143566891 - MER113 DNA MER1_type? -434 87 1 200 35 35 0 chr12 715687 715716 -143566773 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1118 95 0 0 chr12 715718 715855 -143566634 - FRAM SINE Alu -39 137 1 2599 59 3 0 chr12 716416 716723 -143565766 - AluY SINE Alu -3 308 1 3712 107 59 37 chr12 717687 717722 -143564767 - MER4B LTR ERV1 0 610 577 2394 77 20 0 chr12 717722 718021 -143564468 + AluSg SINE Alu 1 305 -5 3712 107 59 37 chr12 718021 718581 -143563908 - MER4B LTR ERV1 -33 577 2 2331 131 32 61 chr12 718650 718951 -143563538 - LTR23 LTR ERV1 -5 432 147 2406 93 0 3 chr12 718951 719263 -143563226 + AluY SINE Alu 1 311 0 2331 131 32 61 chr12 719263 719403 -143563086 - LTR23 LTR ERV1 -290 147 4 2017 110 7 7 chr12 719452 719751 -143562738 + AluSp SINE Alu 1 299 -14 825 182 150 96 chr12 720079 720390 -143562099 + MER51A LTR ERV1 328 640 0 1931 86 104 11 chr12 720449 720767 -143561722 - AluSp SINE Alu 0 313 5 3241 125 54 40 chr12 720830 721179 -143561310 + MER4A LTR ERV1 1 363 -237 1934 108 9 97 chr12 721179 721521 -143560968 + AluSq SINE Alu 2 313 0 3241 125 54 40 chr12 721521 721763 -143560726 + MER4A LTR ERV1 363 600 0 2561 63 3 0 chr12 721823 722125 -143560364 + AluY SINE Alu 1 303 -8 1297 203 96 4 chr12 722153 722414 -143560075 - AluJb SINE Alu -27 285 1 262 170 0 0 chr12 722414 722467 -143560022 - LTR49-int LTR ERV1 -3879 2879 2827 471 189 66 19 chr12 722573 722679 -143559810 - LTR49-int LTR ERV1 -2867 3464 3354 529 177 0 10 chr12 722736 722832 -143559657 - LTR49-int LTR ERV1 -2991 3340 3246 263 125 21 0 chr12 722865 722913 -143559576 - LTR49-int LTR ERV1 -3059 3272 3224 1105 140 0 48 chr12 722916 723102 -143559387 - AluSg/x SINE Alu -3 307 131 417 179 0 0 chr12 723102 723169 -143559320 - AluJ/FLAM SINE Alu -245 67 1 2226 136 43 111 chr12 723169 723468 -143559021 - LTR49-int LTR ERV1 -3099 3232 2915 2332 88 7 0 chr12 723468 723762 -143558727 + AluSp SINE Alu 2 297 -16 2226 136 43 111 chr12 723762 723797 -143558692 - LTR49-int LTR ERV1 -3416 2915 2879 2016 152 7 0 chr12 723797 724093 -143558396 + AluSx SINE Alu 1 298 -14 2226 136 43 111 chr12 724093 724309 -143558180 - LTR49-int LTR ERV1 -3452 2879 2718 237 217 0 0 chr12 724309 724355 -143558134 + MER54B LTR ERVL 746 791 -2 237 218 0 55 chr12 724355 724406 -143558083 - MER31A LTR ERV1 -401 84 37 2603 137 62 19 chr12 724406 724872 -143557617 + MER66B LTR ERV1 1 486 0 3006 207 46 31 chr12 724872 725586 -143556903 - LTR49-int LTR ERV1 -3674 2657 751 525 259 0 0 chr12 725586 725760 -143556729 + (TG)n Simple_repeat Simple_repeat 1 174 0 1969 158 31 74 chr12 725783 726231 -143556258 - LTR49-int LTR ERV1 -4346 1985 1557 484 308 104 37 chr12 726506 726834 -143555655 - LTR49-int LTR ERV1 -6063 695 346 671 165 33 8 chr12 727231 727352 -143555137 - LTR23 LTR ERV1 -21 416 293 917 144 0 7 chr12 727391 727530 -143554959 - AluJb SINE Alu -171 141 4 1056 98 22 120 chr12 727616 727841 -143554648 - LTR23 LTR ERV1 -141 296 94 4975 38 8 0 chr12 728322 728908 -143553581 + LTR10C LTR ERV1 1 591 0 1884 128 23 0 chr12 729319 729607 -143552882 + AluJo SINE Alu 12 305 0 881 200 0 0 chr12 729607 729757 -143552732 + AluJo/FRAM SINE Alu 133 282 -30 2370 106 0 0 chr12 729799 730101 -143552388 + AluSx SINE Alu 1 302 -10 202 139 28 0 chr12 730275 730311 -143552178 + GA-rich Low_complexity Low_complexity 2 38 0 219 225 79 45 chr12 730525 730614 -143551875 - MIR SINE MIR -115 147 56 497 228 79 0 chr12 730719 730846 -143551643 - MER5A DNA MER1_type -5 184 48 2814 177 46 41 chr12 731116 731639 -143550850 - MER82 DNA MER2_type 0 653 125 2574 55 3 0 chr12 731639 731946 -143550543 + AluY SINE Alu 1 308 -3 2814 177 46 41 chr12 731946 732011 -143550478 - MER82 DNA MER2_type -528 125 62 36 0 0 0 chr12 732155 732191 -143550298 + AT_rich Low_complexity Low_complexity 1 36 0 1862 151 3 13 chr12 732728 733039 -143549450 + AluJo SINE Alu 1 308 -4 2006 73 98 4 chr12 733708 733982 -143548507 - AluSx SINE Alu -1 311 12 235 54 89 71 chr12 733982 734038 -143548451 + L1MB2 LINE L1 6113 6169 -2 2202 123 0 7 chr12 734638 734946 -143547543 + AluSx SINE Alu 1 306 -6 718 138 7 7 chr12 735390 735528 -143546961 + CT-rich Low_complexity Low_complexity 3 140 0 756 208 0 0 chr12 735583 735713 -143546776 - FLAM_A SINE Alu -2 131 2 2121 140 0 10 chr12 735725 736039 -143546450 - AluSx SINE Alu -1 311 1 4288 168 32 64 chr12 736039 736902 -143545587 - L1MB4 LINE L1 -39 6141 5252 221 0 35 0 chr12 736902 736931 -143545558 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 4288 168 32 64 chr12 736931 737097 -143545392 - L1MB4 LINE L1 -928 5252 5082 2378 76 3 7 chr12 737097 737399 -143545090 - AluSg SINE Alu -9 301 1 4288 168 32 64 chr12 737399 737652 -143544837 - L1MB4 LINE L1 -1098 5082 4888 23 0 0 0 chr12 737909 737932 -143544557 + AT_rich Low_complexity Low_complexity 1 23 0 2366 97 7 0 chr12 737997 738307 -143544182 - AluSx SINE Alu 0 312 1 3537 25 7 0 chr12 738326 738734 -143543755 - L1PA5 LINE L1 -1 6153 5743 388 263 69 38 chr12 738858 739018 -143543471 + LTR16C LTR ERVL 233 397 -94 1449 150 0 67 chr12 739052 739160 -143543329 - AluJb SINE Alu -76 236 122 2386 69 3 0 chr12 739160 739448 -143543041 - AluY SINE Alu -22 289 1 1449 150 0 67 chr12 739448 739592 -143542897 - AluJb SINE Alu -190 122 1 590 197 51 0 chr12 739923 740040 -143542449 - L1MB7 LINE L1 -43 6141 6019 1286 201 46 111 chr12 740042 740456 -143542033 - MER21B LTR ERV1 -459 404 18 2350 100 0 19 chr12 740456 740767 -143541722 - AluSg SINE Alu -5 305 1 270 0 0 0 chr12 740767 740797 -143541692 + (T)n Simple_repeat Simple_repeat 1 30 0 203 231 15 15 chr12 740808 740873 -143541616 + T-rich Low_complexity Low_complexity 2 66 0 25 0 0 0 chr12 740874 740899 -143541590 + AT_rich Low_complexity Low_complexity 1 25 0 2387 102 0 10 chr12 740901 741215 -143541274 - AluSx SINE Alu -1 311 1 1111 110 23 64 chr12 741227 741338 -143541151 - L1MA4 LINE L1 -16 6284 6185 2002 157 0 0 chr12 741338 741643 -143540846 - AluJo SINE Alu -3 309 5 1111 110 23 64 chr12 741643 741749 -143540740 - L1MA4 LINE L1 -115 6185 6076 1209 190 0 74 chr12 741769 742014 -143540475 - L1MB7 LINE L1 -352 5832 5620 2411 84 0 3 chr12 742014 742313 -143540176 - AluSx SINE Alu -14 298 1 1209 190 0 74 chr12 742313 742379 -143540110 - L1MB7 LINE L1 -564 5620 5551 2853 125 29 7 chr12 742407 742854 -143539635 - MER4C LTR ERV1 -1 464 8 2345 84 3 7 chr12 743241 743538 -143538951 - AluSg SINE Alu -14 296 1 290 246 0 0 chr12 743660 743717 -143538772 - MLT1K LTR MaLR -4 584 528 195 42 0 0 chr12 743742 743766 -143538723 + (A)n Simple_repeat Simple_repeat 1 24 0 321 291 0 0 chr12 743878 743957 -143538532 - MLT1K LTR MaLR -178 410 332 296 77 0 0 chr12 744546 744585 -143537904 - MSTB LTR MaLR 0 426 388 2364 98 0 0 chr12 744588 744884 -143537605 + AluSg SINE Alu 1 296 -14 849 185 17 28 chr12 744892 745070 -143537419 + AluJb SINE Alu 137 312 0 1467 175 105 5 chr12 745074 745403 -143537086 - MSTB LTR MaLR -31 426 4 819 161 0 0 chr12 745483 745601 -143536888 - FLAM_C SINE Alu -25 118 1 2539 70 0 0 chr12 745603 745904 -143536585 - AluSx SINE Alu -11 301 1 1652 165 0 55 chr12 745904 746232 -143536257 - AluJb SINE Alu 0 312 3 644 251 110 57 chr12 746309 746400 -143536089 + MER115 DNA AcHobo 410 495 -198 1984 63 4 0 chr12 746400 746638 -143535851 - AluY SINE Alu -17 294 56 644 251 110 57 chr12 746638 746809 -143535680 + MER115 DNA AcHobo 495 686 -7 181 147 0 0 chr12 747284 747318 -143535171 - MIR SINE MIR -128 134 101 2326 88 0 0 chr12 747344 747638 -143534851 - AluSc SINE Alu -14 295 2 1876 172 0 0 chr12 747643 747933 -143534556 - AluJb SINE Alu -20 292 3 1172 80 73 0 chr12 747944 748094 -143534395 - AluSg/x SINE Alu -18 294 134 2271 108 0 3 chr12 748094 748389 -143534100 - AluSx SINE Alu -18 294 1 345 174 0 111 chr12 748466 748580 -143533909 - MER45A DNA AcHobo 0 178 81 437 299 113 59 chr12 748828 748854 -143533635 + L2 LINE L2 1528 1551 -1763 714 216 22 50 chr12 748854 748935 -143533554 - MER69A DNA AcHobo -2349 177 95 2190 88 51 0 chr12 748935 749230 -143533259 + AluY SINE Alu 1 310 -1 714 216 22 50 chr12 749230 749329 -143533160 - MER69A DNA AcHobo -2431 95 2 437 299 113 59 chr12 749329 749584 -143532905 + L2 LINE L2 1551 1791 -1523 1718 132 99 185 chr12 749584 750132 -143532357 - LTR36 LTR ERV1 -1 610 127 2209 38 48 31 chr12 750132 750421 -143532068 - AluY SINE Alu -6 305 12 1718 132 99 185 chr12 750421 750538 -143531951 - LTR36 LTR ERV1 -484 127 2 437 299 113 59 chr12 750538 750813 -143531676 + L2 LINE L2 1791 2115 -1199 1828 124 96 37 chr12 750859 751213 -143531276 - THE1C LTR MaLR 0 375 1 2119 112 0 30 chr12 751230 751533 -143530956 - AluSx SINE Alu -18 294 1 736 210 27 58 chr12 751623 751880 -143530609 - L2 LINE L2 -378 2936 2688 2305 113 3 0 chr12 751958 752268 -143530221 + AluSp SINE Alu 1 311 -2 1223 93 27 22 chr12 752268 752594 -143529895 + AluSg/x SINE Alu 129 458 0 1117 100 6 6 chr12 752600 752780 -143529709 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 25 51 0 0 chr12 753348 753387 -143529102 + AT_rich Low_complexity Low_complexity 1 39 0 393 275 92 56 chr12 753595 753967 -143528522 + L1ME LINE L1 4686 5080 -1066 2302 143 37 8 chr12 753967 754344 -143528145 + MLT1B LTR MaLR 1 388 -2 393 275 92 56 chr12 754344 754436 -143528053 + L1ME LINE L1 5080 5167 -979 356 248 168 8 chr12 754586 754711 -143527778 - Charlie8 DNA MER1_type -2272 145 1 340 189 81 18 chr12 755356 755467 -143527022 + L1ME4a LINE L1 6004 6121 0 655 277 33 28 chr12 756177 756390 -143526099 - MIR SINE MIR -44 218 5 352 185 62 0 chr12 756806 756887 -143525602 + MIR SINE MIR 156 241 -21 557 273 95 63 chr12 757536 757884 -143524605 - LTR16A LTR ERVL 0 450 92 477 232 116 0 chr12 757993 758105 -143524384 - AluJo/FRAM SINE Alu -17 295 171 517 135 0 0 chr12 758105 758179 -143524310 + AluJb SINE Alu 192 265 -47 862 215 11 0 chr12 758901 759087 -143523402 - MER53 DNA DNA -1 188 1 985 141 37 0 chr12 759097 759260 -143523229 - MER3 DNA MER1_type -86 123 2 390 145 0 0 chr12 760024 760086 -143522403 + FLAM SINE Alu 71 132 -1 848 250 43 71 chr12 760154 760369 -143522120 + L1ME LINE L1 5360 5559 -562 2372 45 41 10 chr12 760369 760660 -143521829 - AluY SINE Alu -11 300 1 848 250 43 71 chr12 760660 760791 -143521698 + L1ME LINE L1 5559 5692 -429 2251 140 88 10 chr12 760811 761196 -143521293 - MSTA LTR MaLR -1 427 13 328 130 0 0 chr12 761196 761242 -143521247 - MSTA LTR MaLR -382 46 1 3638 228 50 50 chr12 761623 761703 -143520786 + L1MEc LINE L1 35 113 -6092 1599 67 5 14 chr12 761703 761913 -143520576 - AluY SINE Alu -21 290 83 3638 228 50 50 chr12 761913 762763 -143519726 + L1MEc LINE L1 113 961 -5244 2485 80 3 0 chr12 762763 763065 -143519424 + AluSp SINE Alu 1 303 -10 3638 228 50 50 chr12 763065 763148 -143519341 + L1MEc LINE L1 961 1008 -5197 1280 54 0 0 chr12 763148 763296 -143519193 + L1PA5 LINE L1 5998 6145 -9 3638 228 50 50 chr12 763296 763320 -143519169 + L1MEc LINE L1 1008 1030 -5175 270 229 0 0 chr12 763329 763390 -143519099 + L1MEc LINE L1 1034 1094 -5302 2220 149 65 88 chr12 763392 763667 -143518822 - L1MB8 LINE L1 -307 5871 5591 1526 173 39 14 chr12 763667 763950 -143518539 - AluJb SINE Alu -18 294 5 2220 149 65 88 chr12 763950 764083 -143518406 - L1MB8 LINE L1 -587 5591 5475 2126 99 60 0 chr12 764083 764367 -143518122 - AluSx SINE Alu -11 301 1 2220 149 65 88 chr12 764367 764481 -143518008 - L1MB8 LINE L1 -703 5475 5360 249 33 0 0 chr12 764502 764532 -143517957 + (TG)n Simple_repeat Simple_repeat 2 31 0 793 118 109 0 chr12 764537 764647 -143517842 - FRAM SINE Alu -22 154 33 2448 191 41 45 chr12 764648 764876 -143517613 - L1MB8 LINE L1 -1064 5082 4855 2377 75 0 3 chr12 764876 765170 -143517319 - AluY SINE Alu -18 293 1 2448 191 41 45 chr12 765170 765569 -143516920 - L1MB8 LINE L1 -1291 4855 4457 308 111 32 63 chr12 765573 765636 -143516853 - HY1 scRNA scRNA -1 111 51 370 183 0 0 chr12 765676 765758 -143516731 - L1MB8 LINE L1 -1688 4458 4377 1846 129 41 0 chr12 765763 766066 -143516423 + AluSx SINE Alu 1 314 0 297 217 29 152 chr12 766091 766229 -143516260 + MIR3 SINE MIR 88 208 0 1448 280 54 20 chr12 766388 766848 -143515641 - L3 LINE CR1 -5 1572 1097 1520 173 67 35 chr12 766858 767141 -143515348 + AluJb SINE Alu 1 292 -20 970 130 0 15 chr12 767161 767292 -143515197 + AluJo SINE Alu 1 129 -173 198 0 0 0 chr12 767343 767365 -143515124 + (T)n Simple_repeat Simple_repeat 1 22 0 474 303 47 14 chr12 767498 767771 -143514718 - L3 LINE CR1 -870 707 369 763 257 72 0 chr12 767865 768087 -143514402 - MIR SINE MIR 0 262 25 951 148 0 0 chr12 768607 768749 -143513740 + AluJo SINE Alu 137 278 -34 222 37 0 0 chr12 768762 768789 -143513700 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 29 47 0 0 chr12 769763 769806 -143512683 + AT_rich Low_complexity Low_complexity 1 43 0 1754 150 20 23 chr12 769808 770114 -143512375 - AluSx SINE Alu -7 305 1 2355 90 0 3 chr12 770183 770484 -143512005 + AluSp SINE Alu 1 300 -13 372 103 0 0 chr12 770538 770596 -143511893 + (TG)n Simple_repeat Simple_repeat 1 58 0 2383 54 3 10 chr12 770624 770918 -143511571 - AluY SINE Alu -19 292 1 2174 107 0 0 chr12 772174 772483 -143510006 - AluSx SINE Alu 0 309 1 2277 99 0 10 chr12 772777 773081 -143509408 + AluSx SINE Alu 1 301 -11 3503 218 63 24 chr12 773523 773579 -143508910 - L1ME1 LINE L1 -5 6230 6178 1579 141 118 8 chr12 773579 773842 -143508647 + AluJo SINE Alu 1 292 -20 3503 218 63 24 chr12 773842 774749 -143507740 - L1ME1 LINE L1 -57 6178 5227 877 148 0 40 chr12 774749 774898 -143507591 + FLAM_C SINE Alu 1 143 0 391 160 53 0 chr12 774905 774980 -143507509 - L1ME1 LINE L1 -985 5230 5152 722 194 40 0 chr12 774982 775106 -143507383 - FLAM_C SINE Alu -12 131 3 2385 90 3 0 chr12 775126 775425 -143507064 + AluSc SINE Alu 1 300 -9 390 171 53 0 chr12 775426 775502 -143506987 - L1ME1 LINE L1 -1059 5156 5077 * 1379 242 70 29 chr12 775496 775887 -143506602 - L1ME1 LINE L1 -3698 2517 2141 2368 71 0 19 chr12 775887 776195 -143506294 - AluY SINE Alu -9 302 1 1379 242 70 29 chr12 776195 776445 -143506044 - L1ME1 LINE L1 -4074 2141 1903 23 33 0 0 chr12 776445 776475 -143506014 + AT_rich Low_complexity Low_complexity 1 30 0 912 147 0 0 chr12 776475 776604 -143505885 - FLAM_C SINE Alu -3 130 2 316 259 84 35 chr12 776738 776881 -143505608 - L1ME1 LINE L1 -4577 1819 1670 184 97 0 32 chr12 776937 776968 -143505521 - MER5B DNA MER1_type -123 55 26 230 336 15 15 chr12 777164 777301 -143505188 + HAL1b LINE L1 1211 1347 -1 1535 99 9 0 chr12 777349 777560 -143504929 + AluSg/x SINE Alu 88 300 -10 465 284 117 94 chr12 777667 777878 -143504611 - L1MC4a LINE L1 -1884 5924 5719 1212 146 0 0 chr12 777878 778042 -143504447 - FRAM SINE Alu -2 164 1 465 284 117 94 chr12 778042 778065 -143504424 - L1MC4a LINE L1 -2089 5719 5698 2215 97 3 3 chr12 778065 778355 -143504134 - AluSg SINE Alu -6 304 15 465 284 117 94 chr12 778355 778574 -143503915 - L1MC4a LINE L1 -2110 5698 5460 189 0 0 0 chr12 778610 778631 -143503858 + (T)n Simple_repeat Simple_repeat 1 21 0 1633 173 66 4 chr12 778641 778913 -143503576 + AluJo SINE Alu 1 289 -23 308 289 161 51 chr12 778978 779023 -143503466 - L1MC4a LINE L1 -748 5398 5359 2173 112 3 0 chr12 779023 779319 -143503170 - AluSx SINE Alu -5 307 11 308 289 161 51 chr12 779319 779882 -143502607 - L1MC4a LINE L1 -787 5359 4723 333 186 0 29 chr12 780616 780710 -143501779 + AluJ/FRAM SINE Alu 224 302 0 230 238 0 0 chr12 782597 782639 -143499850 + polypyrimidine Low_complexity Low_complexity 1 42 0 344 291 173 53 chr12 784082 784481 -143498008 + L1M2 LINE L1 536 982 -5867 22 0 0 0 chr12 785206 785228 -143497261 + AT_rich Low_complexity Low_complexity 1 22 0 2249 100 3 0 chr12 786092 786401 -143496088 + AluSg SINE Alu 1 310 0 185 234 0 21 chr12 787324 787371 -143495118 - MIR SINE MIR -121 141 96 1315 80 0 58 chr12 787704 787892 -143494597 - AluSc SINE Alu -3 306 130 2498 72 3 0 chr12 788153 788460 -143494029 + AluSg SINE Alu 1 308 -2 2158 21 0 0 chr12 788768 789005 -143493484 - AluYb8 SINE Alu -2 316 80 33 25 0 0 chr12 789407 789447 -143493042 + AT_rich Low_complexity Low_complexity 1 40 0 28 29 0 0 chr12 789670 789705 -143492784 + AT_rich Low_complexity Low_complexity 1 35 0 2422 77 0 0 chr12 789726 790026 -143492463 - AluSg SINE Alu -10 300 1 728 228 162 5 chr12 790115 790312 -143492177 + MIR SINE MIR 5 232 -30 2026 111 6 59 chr12 791158 791482 -143491007 - AluSx SINE Alu -5 307 1 1255 183 71 80 chr12 792305 792443 -143490046 + MER2 DNA MER2_type 1 139 -206 2150 108 0 14 chr12 792443 792740 -143489749 - AluSx SINE Alu -2 310 18 1255 183 71 80 chr12 792740 792939 -143489550 + MER2 DNA MER2_type 139 335 -10 2284 103 6 0 chr12 793132 793443 -143489046 - AluSp SINE Alu 0 313 1 369 217 0 0 chr12 793479 793548 -143488941 - Tigger7 DNA MER2_type -31 2460 2392 800 118 118 123 chr12 793565 793699 -143488790 - Tigger7 DNA MER2_type -2243 244 110 2265 105 0 16 chr12 793699 794003 -143488486 + AluSq SINE Alu 1 299 -14 800 118 118 123 chr12 794003 794055 -143488434 - Tigger7 DNA MER2_type -2377 110 59 341 286 34 84 chr12 794324 794562 -143487927 - L2 LINE L2 -941 2373 2148 2433 79 7 0 chr12 794757 795062 -143487427 + AluSp SINE Alu 7 313 0 742 150 64 132 chr12 795224 795262 -143487227 - MER3 DNA MER1_type -3 206 167 1882 117 34 0 chr12 795262 795527 -143486962 - AluSq SINE Alu -39 274 1 742 150 64 132 chr12 795527 795663 -143486826 - MER3 DNA MER1_type -42 167 47 1656 181 7 10 chr12 795663 795951 -143486538 + AluJo SINE Alu 1 287 -25 742 150 64 132 chr12 795951 795995 -143486494 - MER3 DNA MER1_type -162 47 2 715 194 0 43 chr12 796046 796185 -143486304 + FLAM_C SINE Alu 1 133 0 204 208 198 52 chr12 796401 796497 -143485992 - L2 LINE L2 -1414 1900 1791 734 143 7 97 chr12 796498 796652 -143485837 + L1PB4 LINE L1 6011 6150 -6 23 0 0 0 chr12 796660 796683 -143485806 + AT_rich Low_complexity Low_complexity 1 23 0 2293 92 7 0 chr12 796882 797174 -143485315 - AluSg SINE Alu -16 294 1 2229 114 0 0 chr12 797176 797474 -143485015 - AluSx SINE Alu -14 298 1 2403 97 0 0 chr12 797638 797948 -143484541 - AluSg SINE Alu 0 310 1 2040 129 0 16 chr12 798524 798833 -143483656 - AluSx SINE Alu -8 304 1 2328 88 7 3 chr12 799208 799505 -143482984 - AluSg SINE Alu -12 298 1 944 185 82 26 chr12 799567 799601 -143482888 - L1MC4a LINE L1 -903 6905 6874 2030 121 10 13 chr12 799601 799899 -143482590 - AluSx SINE Alu -15 297 1 944 185 82 26 chr12 799899 800096 -143482393 - L1MC4a LINE L1 -934 6874 6661 685 187 261 84 chr12 800118 800370 -143482119 - MLT1A1 LTR MaLR 0 365 47 2474 70 3 3 chr12 800370 800671 -143481818 - AluSp SINE Alu -12 301 1 685 187 261 84 chr12 800671 800728 -143481761 - MLT1A1 LTR MaLR -318 47 1 558 146 222 27 chr12 800763 800948 -143481541 + Charlie5 DNA MER1_type 2364 2584 -28 2189 91 0 10 chr12 801395 801693 -143480796 - AluY SINE Alu -15 296 2 1632 115 0 0 chr12 801915 802132 -143480357 - AluSx SINE Alu -95 217 1 649 195 51 0 chr12 802219 802337 -143480152 - AluJb SINE Alu -178 134 11 254 228 89 50 chr12 802523 802624 -143479865 - L1ME4a LINE L1 -19 6102 5998 417 156 0 0 chr12 802802 802879 -143479610 + (TG)n Simple_repeat Simple_repeat 1 77 0 2453 65 7 0 chr12 803375 803668 -143478821 + AluSp SINE Alu 1 295 -18 231 303 202 0 chr12 804034 804133 -143478356 - L2 LINE L2 -4 3309 3191 234 224 224 36 chr12 804133 804325 -143478164 - L1ME4a LINE L1 -202 5919 5692 313 226 24 89 chr12 804968 805092 -143477397 - L1ME4a LINE L1 -458 5663 5548 603 162 0 23 chr12 805846 806081 -143476408 + AluJo SINE Alu 24 290 -22 216 237 130 95 chr12 806153 806322 -143476167 - MIR SINE MIR -30 232 58 1709 166 4 4 chr12 806450 806727 -143475762 - AluJo SINE Alu -31 281 5 393 39 0 0 chr12 806792 806843 -143475646 + (TG)n Simple_repeat Simple_repeat 2 52 0 2184 92 3 3 chr12 806843 807127 -143475362 - AluSc SINE Alu -25 284 1 2304 95 10 0 chr12 807549 807855 -143474634 - AluSc SINE Alu 0 309 1 31 0 0 0 chr12 808688 808719 -143473770 + AT_rich Low_complexity Low_complexity 1 31 0 2275 108 7 0 chr12 808723 809028 -143473461 - AluSx SINE Alu -5 307 1 21 0 0 0 chr12 809035 809056 -143473433 + AT_rich Low_complexity Low_complexity 1 21 0 2280 109 10 0 chr12 809759 810099 -143472390 - AluSx SINE Alu 0 343 1 445 200 178 0 chr12 811358 811493 -143470996 + MER112 DNA MER1_type 1 159 -101 210 37 0 0 chr12 811498 811525 -143470964 + (CAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr12 811970 811992 -143470497 + AT_rich Low_complexity Low_complexity 1 22 0 246 342 63 9 chr12 812727 812838 -143469651 - MIR SINE MIR -70 192 76 1834 114 8 0 chr12 812955 813201 -143469288 - AluSx SINE Alu -64 248 1 949 150 73 49 chr12 813204 813296 -143469193 - MER33 DNA MER1_type -2304 281 193 1933 124 3 54 chr12 813296 813611 -143468878 - AluJo SINE Alu -13 299 1 949 150 73 49 chr12 813611 813765 -143468724 - MER33 DNA MER1_type -2392 193 29 1249 152 4 52 chr12 813765 813996 -143468493 + AluJo SINE Alu 1 220 -92 1185 199 0 14 chr12 814050 814271 -143468218 + AluJo SINE Alu 3 220 -92 243 0 0 0 chr12 814306 814333 -143468156 + (A)n Simple_repeat Simple_repeat 1 27 0 1460 210 0 10 chr12 814337 814628 -143467861 + AluJo SINE Alu 3 290 -22 22 0 0 0 chr12 814631 814653 -143467836 + AT_rich Low_complexity Low_complexity 1 22 0 403 204 97 9 chr12 814909 815022 -143467467 - L1MA10 LINE L1 0 6334 6212 * 1740 260 96 28 chr12 815020 815800 -143466689 - HAL1 LINE L1 -499 2008 1176 2017 90 11 4 chr12 815820 816086 -143466403 - AluY SINE Alu -35 276 9 25 0 0 0 chr12 816151 816176 -143466313 + AT_rich Low_complexity Low_complexity 1 25 0 320 284 153 26 chr12 816201 816391 -143466098 - HAL1 LINE L1 -1631 876 663 479 324 135 30 chr12 816414 816867 -143465622 - L1M4 LINE L1 -3360 2786 2251 2133 128 3 0 chr12 816867 817164 -143465325 - AluSq SINE Alu -15 298 1 479 324 135 30 chr12 817164 817318 -143465171 - L1M4 LINE L1 -3895 2251 2115 21 0 0 0 chr12 817547 817568 -143464921 + AT_rich Low_complexity Low_complexity 1 21 0 191 337 20 61 chr12 817585 817683 -143464806 + MIR SINE MIR 4 97 -165 661 104 85 0 chr12 817704 817810 -143464679 - AluJb SINE Alu -193 119 5 440 177 125 0 chr12 817816 817912 -143464577 + MIR SINE MIR 155 262 0 186 43 0 0 chr12 818229 818252 -143464237 + (TG)n Simple_repeat Simple_repeat 2 24 0 1544 168 59 66 chr12 818274 818666 -143463823 - MLT2C1 LTR ERVL -8 389 1 2144 104 0 0 chr12 819006 819284 -143463205 + AluSg SINE Alu 3 280 -30 978 130 86 12 chr12 819932 820094 -143462395 - AluJo SINE Alu -10 302 129 523 255 78 52 chr12 820309 820540 -143461949 - MLT1L LTR MaLR -377 238 2 803 165 0 0 chr12 820669 820796 -143461693 - AluJo SINE Alu -180 132 6 198 224 0 0 chr12 821175 821224 -143461265 + CT-rich Low_complexity Low_complexity 3 51 0 321 26 0 0 chr12 821623 821661 -143460828 + (CA)n Simple_repeat Simple_repeat 1 38 0 2230 101 0 10 chr12 822703 823011 -143459478 - AluSg SINE Alu -5 305 1 23 33 0 0 chr12 823216 823246 -143459243 + AT_rich Low_complexity Low_complexity 1 30 0 247 253 154 11 chr12 823332 823423 -143459066 + MIR SINE MIR 111 214 -48 3018 171 60 23 chr12 824159 824807 -143457682 - L1MB8 LINE L1 -6 6172 5501 1637 196 73 100 chr12 824820 825169 -143457320 - L1MB8 LINE L1 -2106 4040 3683 1444 214 18 11 chr12 825169 825449 -143457040 - AluJo SINE Alu -30 282 1 1637 196 73 100 chr12 825449 825724 -143456765 - L1MB8 LINE L1 -2463 3683 3433 1545 154 91 51 chr12 825724 826074 -143456415 + THE1B LTR MaLR 1 364 0 1637 196 73 100 chr12 826074 826121 -143456368 - L1MB8 LINE L1 -2713 3433 3386 1607 161 58 14 chr12 826280 826571 -143455918 - AluSx SINE Alu -8 304 1 494 247 60 0 chr12 826592 826742 -143455747 - L1MEc LINE L1 -4320 2076 1918 542 84 0 0 chr12 826902 826973 -143455516 - AluS SINE Alu -242 71 1 2247 89 0 13 chr12 828060 828364 -143454125 + AluSx SINE Alu 1 300 -12 2450 62 0 3 chr12 828585 828889 -143453600 - AluY SINE Alu -8 303 1 23 0 0 0 chr12 829048 829071 -143453418 + AT_rich Low_complexity Low_complexity 1 23 0 1849 142 3 27 chr12 829533 829828 -143452661 - AluJb SINE Alu -24 288 1 1365 194 0 86 chr12 829960 830082 -143452407 + AluJo SINE Alu 5 136 -176 2044 112 7 0 chr12 830082 830359 -143452130 - AluSx SINE Alu -10 302 24 1365 194 0 86 chr12 830359 830550 -143451939 + AluJo SINE Alu 136 291 -21 848 163 113 17 chr12 830558 830797 -143451692 - MER69 DNA AcHobo -100 2426 2165 21 0 0 0 chr12 830821 830842 -143451647 + AT_rich Low_complexity Low_complexity 1 21 0 227 44 44 0 chr12 830856 830901 -143451588 - L1MB4 LINE L1 0 6180 6134 369 0 0 0 chr12 831821 831862 -143450627 + (TG)n Simple_repeat Simple_repeat 2 42 0 1446 169 8 0 chr12 831862 832104 -143450385 - AluJo SINE Alu -67 245 2 1074 91 0 9 chr12 833898 834161 -143448328 + AluSx SINE Alu 1 307 -3 1605 147 13 102 chr12 834665 834827 -143447662 - L1MB3 LINE L1 -11 6172 6062 1892 95 0 0 chr12 834827 835070 -143447419 - AluSq SINE Alu -70 243 1 1605 147 13 102 chr12 835070 835289 -143447200 - L1MB3 LINE L1 -121 6062 5825 212 76 76 45 chr12 835302 835368 -143447121 + (TATAA)n Simple_repeat Simple_repeat 5 72 0 1617 183 25 53 chr12 835368 835761 -143446728 - L1MB3 LINE L1 -364 5816 5435 22 0 0 0 chr12 836255 836277 -143446212 + AT_rich Low_complexity Low_complexity 1 22 0 762 139 9 0 chr12 837575 837690 -143444799 + FLAM_C SINE Alu 2 117 -16 2683 32 0 0 chr12 838106 838416 -143444073 - AluY SINE Alu -1 310 1 564 181 147 0 chr12 838688 838804 -143443685 - FLAM_C SINE Alu 0 133 1 2388 89 0 0 chr12 839159 839461 -143443028 - AluSq SINE Alu -11 302 1 32 0 0 0 chr12 839623 839655 -143442834 + AT_rich Low_complexity Low_complexity 1 32 0 2237 97 10 0 chr12 840367 840656 -143441833 + AluSg SINE Alu 1 292 -18 206 258 106 30 chr12 842745 842811 -143439678 - L2 LINE L2 -4 3309 3239 368 229 41 118 chr12 843065 843310 -143439179 + L1MEd LINE L1 983 1208 -4911 1664 159 31 7 chr12 843365 843655 -143438834 + AluJo SINE Alu 9 305 -7 2151 82 26 49 chr12 844429 844734 -143437755 + AluSx SINE Alu 1 298 -14 3410 121 17 19 chr12 845070 845598 -143436891 - MER1A DNA MER1_type 0 527 1 321 306 136 35 chr12 846279 846537 -143435952 + L1MEd LINE L1 82 365 -5754 1477 176 3 60 chr12 846666 846985 -143435504 - AluJo SINE Alu -11 301 1 331 243 134 102 chr12 847167 847608 -143434881 + L1MEd LINE L1 682 1136 -4983 1078 105 0 0 chr12 847608 847751 -143434738 + AluSg/x SINE Alu 155 297 -12 2228 92 3 44 chr12 848054 848371 -143434118 + AluSx SINE Alu 1 304 -8 869 184 32 0 chr12 848405 848590 -143433899 - L1MB5 LINE L1 0 6174 5984 423 258 53 33 chr12 848704 848855 -143433634 + MIR3 SINE MIR 14 167 -41 2247 192 80 12 chr12 848916 849020 -143433469 - L1MB5 LINE L1 -36 6138 6035 1450 224 171 9 chr12 849020 849725 -143432764 - L1MC4 LINE L1 -743 5639 5401 1047 145 98 28 chr12 849733 849947 -143432542 - MER46A DNA MER2_type -7 229 1 5505 218 62 28 chr12 849951 850864 -143431625 - L1MC4 LINE L1 -981 5401 4408 1722 181 7 16 chr12 850864 851173 -143431316 - AluJo SINE Alu -6 306 1 5505 218 62 28 chr12 851173 851861 -143430628 - L1MC4 LINE L1 -1974 4408 3745 4361 191 105 56 chr12 851875 852485 -143430004 - L1MC4 LINE L1 -3434 2948 2369 2385 88 0 3 chr12 852485 852790 -143429699 - AluSg SINE Alu -6 304 1 4361 191 105 56 chr12 852790 854034 -143428455 - L1MC4 LINE L1 -4013 2369 997 190 260 250 0 chr12 854040 854140 -143428349 - MIR SINE MIR -10 252 128 2021 134 0 13 chr12 854298 854605 -143427884 - AluSx SINE Alu -8 304 2 26 30 0 0 chr12 855168 855201 -143427288 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr12 855335 855366 -143427123 + AT_rich Low_complexity Low_complexity 1 31 0 544 182 54 68 chr12 855478 855626 -143426863 - L1ME2 LINE L1 -52 6112 5967 322 286 61 56 chr12 855756 855987 -143426502 - L1MCa LINE L1 -4196 1884 1653 271 153 129 0 chr12 856077 856162 -143426327 + L1M4 LINE L1 1257 1352 -5190 625 205 41 41 chr12 856351 856522 -143425967 - L1MCa LINE L1 -5580 490 320 982 181 52 5 chr12 856526 856719 -143425770 + MER3 DNA MER1_type 3 204 -5 488 240 143 41 chr12 856832 857028 -143425461 - L1MCa LINE L1 -5853 217 2 2190 108 0 0 chr12 857914 858226 -143424263 - AluSx SINE Alu 0 312 1 30 77 0 0 chr12 858314 858379 -143424110 + AT_rich Low_complexity Low_complexity 1 65 0 2201 112 0 26 chr12 858413 858726 -143423763 + AluSx SINE Alu 1 305 -7 1096 186 0 61 chr12 858835 859066 -143423423 - MER20 DNA MER1_type -1 218 2 476 262 160 44 chr12 861115 861478 -143421011 - L1MC5 LINE L1 -207 7754 7350 1658 149 51 70 chr12 861529 861653 -143420836 + Charlie1b DNA MER1_type 104 229 -2532 2248 111 0 0 chr12 861653 861950 -143420539 + AluSx SINE Alu 1 297 -15 1658 149 51 70 chr12 861950 862253 -143420236 + Charlie1b DNA MER1_type 229 523 0 2395 71 0 0 chr12 862466 862760 -143419729 - AluY SINE Alu -5 306 13 191 376 55 24 chr12 863452 863617 -143418872 + L2 LINE L2 2415 2584 -730 356 340 97 59 chr12 864231 864552 -143417937 - L2 LINE L2 -16 3256 2924 378 288 56 24 chr12 864963 865088 -143417401 + MIR SINE MIR 26 154 -108 1762 144 3 63 chr12 865434 865753 -143416736 + AluJb SINE Alu 1 300 -12 282 202 149 43 chr12 865930 866024 -143416465 - L2 LINE L2 -16 3297 3194 2114 122 7 3 chr12 866068 866363 -143416126 + AluSx SINE Alu 1 296 -16 2596 223 38 18 chr12 867341 867420 -143415069 - L1MB8 LINE L1 0 6178 6102 2623 110 34 63 chr12 867420 867689 -143414800 - MER57B LTR ERV1 0 434 182 2428 90 0 0 chr12 867689 868000 -143414489 + AluSx SINE Alu 1 311 -1 2623 110 34 63 chr12 868000 868177 -143414312 - MER57B LTR ERV1 -252 182 1 2596 223 38 18 chr12 868177 868476 -143414013 - L1MB8 LINE L1 -76 6102 5810 303 28 0 0 chr12 868476 868512 -143413977 + (TG)n Simple_repeat Simple_repeat 2 37 0 2596 223 38 18 chr12 868512 868799 -143413690 - L1MB8 LINE L1 -368 5810 5499 1791 164 4 7 chr12 868802 869108 -143413381 - AluJb SINE Alu 0 310 6 740 208 77 11 chr12 869109 869292 -143413197 - MLT1C LTR MaLR -272 195 1 320 301 63 28 chr12 869301 869444 -143413045 - L2 LINE L2 -5 3308 3161 322 346 45 11 chr12 869735 869914 -143412575 - L2 LINE L2 -601 2713 2529 26 64 0 0 chr12 870060 870107 -143412382 + AT_rich Low_complexity Low_complexity 1 47 0 1876 121 7 37 chr12 870126 870424 -143412065 - AluSx SINE Alu -23 289 1 1381 197 31 76 chr12 870444 870518 -143411971 + MER58B DNA MER1_type 3 79 -2341 1665 167 0 21 chr12 870518 870806 -143411683 - AluJo SINE Alu -7 305 24 1381 197 31 76 chr12 870806 871086 -143411403 + MER58B DNA MER1_type 79 341 0 2019 149 39 42 chr12 871491 871900 -143410589 - L1MB7 LINE L1 -21 6163 5756 1658 178 27 56 chr12 872001 872377 -143410112 - MLT1A1 LTR MaLR 0 365 1 185 174 87 0 chr12 872457 872503 -143409986 + L2 LINE L2 3264 3313 0 255 103 0 0 chr12 872680 872719 -143409770 + MADE1 DNA Mariner 42 80 0 189 0 0 0 chr12 872875 872896 -143409593 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 243 0 0 0 chr12 873321 873348 -143409141 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1959 138 0 3 chr12 873351 873634 -143408855 - AluSx SINE Alu -30 282 1 1778 143 77 29 chr12 873658 874037 -143408452 - Charlie1 DNA MER1_type -19 2742 2346 274 304 0 14 chr12 874039 874108 -143408381 - Charlie1 DNA MER1_type -2691 70 3 389 204 261 42 chr12 874129 874271 -143408218 + MER5A DNA MER1_type 11 183 -6 1931 134 6 19 chr12 874519 874833 -143407656 - AluSx SINE Alu -2 310 1 26 0 0 0 chr12 875210 875236 -143407253 + AT_rich Low_complexity Low_complexity 1 26 0 2827 13 0 0 chr12 875283 875592 -143406897 - AluYa5 SINE Alu -2 309 1 22 70 0 0 chr12 875617 875660 -143406829 + AT_rich Low_complexity Low_complexity 1 43 0 416 240 39 10 chr12 875930 876034 -143406455 + MIR SINE MIR 14 120 -142 292 281 157 7 chr12 876260 876413 -143406076 - MIR SINE MIR -6 256 81 204 412 0 15 chr12 877990 878058 -143404431 + MIR3 SINE MIR 15 81 -127 2181 104 13 13 chr12 878194 878502 -143403987 - AluSc SINE Alu -1 308 1 180 0 0 0 chr12 878894 878914 -143403575 + (T)n Simple_repeat Simple_repeat 1 20 0 7714 20 3 1 chr12 879968 881378 -143401111 - L1PA4 LINE L1 -4 6151 4741 1604 164 10 10 chr12 884156 884448 -143398041 - AluJo SINE Alu -20 292 1 1560 167 64 4 chr12 884483 884747 -143397742 + AluJo SINE Alu 1 280 -32 2175 92 34 0 chr12 884753 885045 -143397444 - AluSx SINE Alu -10 302 1 1157 189 160 39 chr12 885129 885436 -143397053 + MER2 DNA MER2_type 1 344 0 2425 78 0 3 chr12 886229 886536 -143395953 - AluSc SINE Alu -3 306 1 22 56 0 19 chr12 886538 886563 -143395926 + AT_rich Low_complexity Low_complexity 1 25 -28 2090 127 0 19 chr12 886563 886877 -143395612 + AluSx SINE Alu 1 308 -4 22 56 0 19 chr12 886877 886905 -143395584 + AT_rich Low_complexity Low_complexity 25 53 0 1966 159 3 0 chr12 888592 888887 -143393602 - AluSx SINE Alu -16 296 1 258 376 56 16 chr12 889045 889170 -143393319 + MIR SINE MIR 21 150 -58 1858 136 3 42 chr12 890105 890413 -143392076 - AluJo SINE Alu -16 296 1 181 85 0 64 chr12 890437 890484 -143392005 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 2096 123 7 19 chr12 894498 894808 -143387681 - AluSx SINE Alu -6 306 1 2146 89 7 3 chr12 896774 897056 -143385433 - AluSc SINE Alu -25 284 2 2230 97 10 0 chr12 897239 897537 -143384952 + AluSx SINE Alu 1 301 -11 26 0 0 0 chr12 898133 898159 -143384330 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr12 899888 899931 -143382558 + AT_rich Low_complexity Low_complexity 1 43 0 1093 204 5 15 chr12 900959 901165 -143381324 - MER20 DNA MER1_type -2 217 14 2142 121 0 0 chr12 902010 902300 -143380189 - AluSx SINE Alu -22 290 1 1771 99 48 79 chr12 902512 902834 -143379655 - AluSx SINE Alu 0 313 1 882 144 8 0 chr12 904432 904564 -143377925 + FRAM SINE Alu 26 158 -18 658 340 25 5 chr12 905071 905274 -143377215 - MIR SINE MIR -44 218 12 2370 68 0 3 chr12 906524 906818 -143375671 + AluY SINE Alu 1 293 -18 343 249 39 25 chr12 907050 907186 -143375303 + L1PA8A LINE L1 5671 5808 -323 314 267 28 20 chr12 907252 907401 -143375088 + L1ME4a LINE L1 1197 6049 0 2391 93 0 3 chr12 907450 907762 -143374727 - AluSp SINE Alu -2 311 1 329 153 17 0 chr12 909317 909376 -143373113 - HsTC2 DNA Tc2 -2 1896 1837 216 0 0 0 chr12 909911 909935 -143372554 + (T)n Simple_repeat Simple_repeat 1 24 0 182 309 0 0 chr12 912518 912560 -143369929 - L3b LINE CR1 -22 1561 1520 2041 116 0 7 chr12 912599 912876 -143369613 - AluSx SINE Alu -17 295 21 1100 127 0 0 chr12 914275 914432 -143368057 + AluSg/x SINE Alu 131 287 -23 2293 84 0 3 chr12 919934 920221 -143362268 + AluY SINE Alu 1 286 -25 2286 110 0 3 chr12 920349 920650 -143361839 - AluSx SINE Alu -12 300 1 2235 102 7 0 chr12 921541 921835 -143360654 - AluSp SINE Alu -17 296 1 219 88 0 0 chr12 921991 922025 -143360464 + (T)n Simple_repeat Simple_repeat 1 34 0 379 203 14 0 chr12 922094 922168 -143360321 + Charlie1 DNA MER1_type 46 120 -2641 1102 139 12 6 chr12 922170 922335 -143360154 + AluJo SINE Alu 127 292 -20 337 216 137 10 chr12 922335 922437 -143360052 + Charlie1 DNA MER1_type 2149 2263 -498 1280 26 0 7 chr12 922475 922628 -143359861 - L1PA4 LINE L1 -3 6152 6001 844 195 113 15 chr12 922655 922850 -143359639 - MER58A DNA MER1_type 0 224 11 251 257 114 0 chr12 923111 923216 -143359273 + L1MC4a LINE L1 5371 5487 -2321 408 216 84 96 chr12 923353 923370 -143359119 + L1MC4a LINE L1 5716 5732 -2076 1879 172 0 7 chr12 923370 923673 -143358816 + AluJb SINE Alu 1 301 -11 408 216 84 96 chr12 923673 923822 -143358667 + L1MC4a LINE L1 5732 5880 -1928 2343 82 0 0 chr12 923939 924245 -143358244 + AluY SINE Alu 1 306 0 2215 123 0 0 chr12 924333 924626 -143357863 + AluSx SINE Alu 1 293 -19 25 31 0 0 chr12 925812 925844 -143356645 + AT_rich Low_complexity Low_complexity 1 32 0 2277 131 0 0 chr12 925844 926156 -143356333 - AluSx SINE Alu 0 312 1 477 0 0 0 chr12 927284 927337 -143355152 + (CA)n Simple_repeat Simple_repeat 1 53 0 236 198 74 0 chr12 927420 927501 -143354988 + (TTA)n Simple_repeat Simple_repeat 1 87 0 2403 92 3 0 chr12 928600 928903 -143353586 + AluY SINE Alu 1 304 -7 971 169 0 41 chr12 928970 929142 -143353347 - AluJo/FRAM SINE Alu -18 294 130 2224 96 7 3 chr12 929145 929436 -143353053 - AluSx SINE Alu -20 292 1 1215 125 171 75 chr12 929696 929977 -143352512 - AluSx SINE Alu -4 308 1 201 74 0 0 chr12 930405 930432 -143352057 + (T)n Simple_repeat Simple_repeat 1 27 0 1961 91 4 8 chr12 930432 930684 -143351805 - AluSq SINE Alu -62 251 1 1924 147 0 17 chr12 932412 932711 -143349778 + AluJb SINE Alu 1 294 -18 182 250 0 0 chr12 933202 933242 -143349247 + L2 LINE L2 3224 3263 -9 221 219 0 55 chr12 935184 935257 -143347232 - L2 LINE L2 -36 3277 3209 1295 181 82 25 chr12 937153 937434 -143345055 + AluJo SINE Alu 1 297 -15 2224 111 3 7 chr12 937434 937731 -143344758 + AluSx SINE Alu 1 297 -15 195 42 0 0 chr12 941091 941115 -143341374 + (CCA)n Simple_repeat Simple_repeat 3 26 0 21 0 0 0 chr12 941671 941692 -143340797 + AT_rich Low_complexity Low_complexity 1 21 0 1895 116 10 43 chr12 942129 942430 -143340059 + AluSx SINE Alu 1 291 -21 945 149 124 146 chr12 942559 942915 -143339574 + MER46B DNA MER2_type 5 227 -9 731 228 25 0 chr12 942976 943138 -143339351 + FRAM SINE Alu 1 166 0 1574 147 90 4 chr12 945271 945550 -143336939 + AluJb SINE Alu 1 303 -9 2221 114 10 7 chr12 946105 946412 -143336077 - AluSx SINE Alu -4 308 1 200 269 0 0 chr12 946776 946843 -143335646 + (CTG)n Simple_repeat Simple_repeat 3 69 0 647 143 109 0 chr12 947997 948116 -143334373 + AluJb SINE Alu 2 133 -179 1236 109 0 75 chr12 948146 948347 -143334142 + AluSg/x SINE Alu 109 294 -18 890 267 99 44 chr12 948357 948784 -143333705 + L1ME3A LINE L1 5470 5962 -208 1822 141 6 44 chr12 948784 949104 -143333385 - AluJo SINE Alu -4 308 1 890 267 99 44 chr12 949104 949310 -143333179 + L1ME3A LINE L1 5962 6155 -15 628 161 28 133 chr12 949351 949562 -143332927 + L1ME3A LINE L1 5902 6090 -80 2078 119 25 0 chr12 949569 949854 -143332635 + AluSq SINE Alu 11 302 -11 2142 99 3 20 chr12 949859 950162 -143332327 + AluSx SINE Alu 1 298 -14 2032 135 7 7 chr12 950166 950463 -143332026 + AluSq SINE Alu 1 297 -16 1269 109 0 0 chr12 950463 950628 -143331861 + AluSg/x SINE Alu 134 298 -14 2391 224 70 19 chr12 950635 950670 -143331819 + L1M4 LINE L1 2379 2411 -3735 2499 60 0 13 chr12 950670 950972 -143331517 + AluY SINE Alu 1 298 -13 2391 224 70 19 chr12 950972 951722 -143330767 + L1M4 LINE L1 2411 3204 -2942 1596 141 0 20 chr12 951735 951983 -143330506 + AluJb SINE Alu 16 258 -54 527 160 0 84 chr12 951987 952083 -143330406 + AluJb SINE Alu 190 274 -38 216 0 0 0 chr12 952083 952107 -143330382 + (AGATG)n Simple_repeat Simple_repeat 5 28 0 527 160 0 84 chr12 952107 952141 -143330348 + AluJb SINE Alu 274 309 -3 3187 146 32 53 chr12 952142 952219 -143330270 + L1MB2 LINE L1 5319 5396 -775 2288 103 3 0 chr12 952219 952511 -143329978 + AluSx SINE Alu 1 293 -19 3187 146 32 53 chr12 952511 953097 -143329392 + L1MB2 LINE L1 5396 5968 -203 515 183 77 0 chr12 953105 953209 -143329280 + FLAM_C SINE Alu 22 133 -10 1879 139 0 80 chr12 953214 953553 -143328936 - AluSx SINE Alu 0 312 1 250 153 0 0 chr12 953572 953628 -143328861 + FAM SINE Alu 126 169 -6 1313 168 30 99 chr12 953656 953989 -143328500 + AluJo SINE Alu 3 312 0 704 176 204 0 chr12 953989 954165 -143328324 + L1MB2 LINE L1 5960 6171 0 343 147 18 110 chr12 954159 954171 -143328318 + L1M4 LINE L1 3684 3696 -2450 * 2133 105 13 10 chr12 954171 954476 -143328013 + AluSx SINE Alu 1 306 -6 343 147 18 110 chr12 954476 954523 -143327966 + L1M4 LINE L1 3696 3731 -2415 2351 72 3 7 chr12 954523 954814 -143327675 + AluSg SINE Alu 1 290 -20 343 147 18 110 chr12 954814 954862 -143327627 + L1M4 LINE L1 3731 3782 -2364 2513 60 0 0 chr12 955342 955644 -143326845 - AluY SINE Alu -9 302 1 312 241 37 37 chr12 956042 956150 -143326339 - L2 LINE L2 -3 3310 3203 2222 159 56 31 chr12 956416 956605 -143325884 + MSTB LTR MaLR 2 185 -241 1844 153 0 34 chr12 956605 956926 -143325563 + AluJo SINE Alu 1 310 -2 2222 159 56 31 chr12 956926 957150 -143325339 + MSTB LTR MaLR 185 425 -1 233 266 91 106 chr12 957814 957979 -143324510 + Charlie2 DNA MER1_type 117 280 -2502 2303 102 3 0 chr12 957979 958273 -143324216 + AluSx SINE Alu 1 295 -17 233 266 91 106 chr12 958273 958306 -143324183 + Charlie2 DNA MER1_type 280 312 -2470 2149 194 47 118 chr12 958322 958624 -143323865 + Charlie2 DNA MER1_type 1872 2194 -668 2332 82 0 16 chr12 958624 958927 -143323562 + AluSp SINE Alu 1 298 -15 2149 194 47 118 chr12 958927 959307 -143323182 + Charlie2 DNA MER1_type 2194 2479 -383 1668 154 0 4 chr12 959307 959560 -143322929 - AluJo SINE Alu -60 252 1 2149 194 47 118 chr12 959560 959765 -143322724 + Charlie2 DNA MER1_type 2479 2697 -165 379 209 338 14 chr12 959765 959913 -143322576 - MER6B DNA MER2_type 0 210 15 * 736 185 39 22 chr12 959902 960080 -143322409 + Charlie2 DNA MER1_type 2680 2860 -2 841 117 0 17 chr12 960663 960783 -143321706 + FRAM SINE Alu 37 154 -22 2093 128 0 13 chr12 961079 961385 -143321104 + AluJb SINE Alu 1 302 -10 432 126 207 0 chr12 961793 961880 -143320609 - Charlie1 DNA MER1_type -33 2728 2624 * 880 231 60 5 chr12 961879 962078 -143320411 - Charlie1 DNA MER1_type -2551 210 1 1028 85 8 0 chr12 962471 962601 -143319888 + AluSg SINE Alu 1 131 -179 2309 105 0 0 chr12 962609 962904 -143319585 + AluSx SINE Alu 3 297 -15 2255 96 7 3 chr12 963571 963872 -143318617 + AluY SINE Alu 1 302 -9 1093 183 177 19 chr12 964132 964234 -143318255 + MER46B DNA MER2_type 2 87 -2644 1760 145 69 7 chr12 964234 964523 -143317966 + AluJo SINE Alu 1 307 -5 1093 183 177 19 chr12 964523 964579 -143317910 + MER46B DNA MER2_type 87 133 -2598 2277 91 20 0 chr12 964579 964876 -143317613 + AluSx SINE Alu 1 303 -9 1093 183 177 19 chr12 964876 965027 -143317462 + MER46B DNA MER2_type 133 236 0 884 129 43 0 chr12 965035 965175 -143317314 + L1MA9 LINE L1 6162 6307 -5 2207 111 0 7 chr12 965225 965514 -143316975 + AluSx SINE Alu 1 287 -25 190 176 0 0 chr12 965740 965774 -143316715 + MER5A DNA MER1_type 21 54 -135 1233 167 17 25 chr12 965776 966016 -143316473 - AluJo SINE Alu -11 301 64 2401 91 0 0 chr12 966602 966900 -143315589 + AluSg SINE Alu 1 298 -12 1276 119 11 0 chr12 966900 967076 -143315413 + AluSg/x SINE Alu 132 309 -1 680 188 100 109 chr12 967376 967605 -143314884 + MIR SINE MIR 21 247 -15 237 311 40 0 chr12 967636 967710 -143314779 - L2 LINE L2 -5 3308 3232 1302 163 111 12 chr12 967714 967795 -143314694 + AluJo SINE Alu 29 101 -211 2334 87 0 3 chr12 967795 968093 -143314396 + AluSg SINE Alu 1 297 -13 1302 163 111 12 chr12 968093 968263 -143314226 + AluJo SINE Alu 101 305 -7 947 277 83 75 chr12 968274 968999 -143313490 - L2 LINE L2 -681 2633 1903 2092 95 9 54 chr12 969067 969382 -143313107 - AluY SINE Alu -10 301 1 1135 158 0 12 chr12 969416 969587 -143312902 + FAM SINE Alu 1 169 -6 1030 180 40 40 chr12 969913 970113 -143312376 - AluJo SINE Alu -25 287 88 274 367 109 9 chr12 970116 970345 -143312144 + L3 LINE CR1 255 506 -1071 180 282 56 28 chr12 970399 970470 -143312019 + L3 LINE CR1 502 574 -1003 700 339 42 44 chr12 970487 970944 -143311545 - L2 LINE L2 -2595 719 264 213 290 171 38 chr12 970944 971237 -143311252 + L2 LINE L2 1635 1966 -1348 1063 255 199 8 chr12 971237 971718 -143310771 - MLT1F1 LTR MaLR 0 567 1 409 339 189 13 chr12 971718 971834 -143310655 + L2 LINE L2 1962 2056 -1258 2472 92 0 0 chr12 971834 972140 -143310349 - AluSx SINE Alu -6 306 1 409 339 189 13 chr12 972140 972474 -143310015 + L2 LINE L2 2056 2491 -823 2164 81 63 0 chr12 972590 972875 -143309614 - AluSx SINE Alu -9 303 1 221 262 0 0 chr12 972877 972919 -143309570 + L3 LINE CR1 1528 1569 -8 2092 137 0 3 chr12 973183 973483 -143309006 + AluSx SINE Alu 1 299 -13 1516 125 10 0 chr12 973545 973753 -143308736 + AluSc SINE Alu 83 292 -17 21 0 0 0 chr12 973872 973893 -143308596 + AT_rich Low_complexity Low_complexity 1 21 0 2011 94 62 0 chr12 973894 974170 -143308319 - AluSx SINE Alu -8 304 12 791 247 0 18 chr12 974170 974336 -143308153 - AluJo SINE Alu -148 164 2 2101 212 84 29 chr12 974588 974833 -143307656 - L1ME3A LINE L1 -219 5951 5721 2160 127 0 3 chr12 974833 975141 -143307348 - AluSx SINE Alu -5 307 1 2036 136 6 40 chr12 975143 975466 -143307023 - AluJb SINE Alu 0 312 1 2101 212 84 29 chr12 975466 975933 -143306556 - L1ME3A LINE L1 -449 5721 5197 996 116 0 20 chr12 975948 976094 -143306395 + FLAM_C SINE Alu 1 143 0 1101 265 119 13 chr12 976113 976649 -143305840 - L1ME3A LINE L1 -1526 4620 4028 2381 210 27 10 chr12 976649 977130 -143305359 - REP3 LTR ERV 0 562 74 332 272 124 18 chr12 977162 977331 -143305158 - L1ME3A LINE L1 -2114 4032 3846 2378 104 0 0 chr12 977375 977684 -143304805 - AluSg SINE Alu -1 309 1 387 0 0 0 chr12 977786 977829 -143304660 + (TG)n Simple_repeat Simple_repeat 2 44 0 1684 155 42 0 chr12 978155 978420 -143304069 - AluJb SINE Alu -36 276 1 22 0 0 0 chr12 978685 978707 -143303782 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr12 978868 978905 -143303584 + AT_rich Low_complexity Low_complexity 1 37 0 2408 78 3 0 chr12 978941 979236 -143303253 - AluSx SINE Alu -16 296 1 1004 199 130 4 chr12 979249 979380 -143303109 - AluJo SINE Alu -24 288 175 1325 200 51 44 chr12 979380 979675 -143302814 - AluJb SINE Alu -15 297 1 1004 199 130 4 chr12 979675 979774 -143302715 - AluJo SINE Alu -137 175 29 246 86 21 75 chr12 979905 979998 -143302491 + (TA)n Simple_repeat Simple_repeat 2 89 0 361 303 21 28 chr12 980155 980297 -143302192 - L2 LINE L2 -476 2838 2698 480 100 0 0 chr12 980440 980520 -143301969 + (TC)n Simple_repeat Simple_repeat 1 80 0 261 0 0 0 chr12 980520 980549 -143301940 + (TG)n Simple_repeat Simple_repeat 2 30 0 513 211 0 37 chr12 980643 980752 -143301737 - MER3 DNA MER1_type -2 207 103 438 233 78 0 chr12 980855 980958 -143301531 - MER3 DNA MER1_type -98 111 1 1174 153 74 114 chr12 981253 981423 -143301066 - Charlie5 DNA MER1_type -1 2623 2448 1016 90 0 15 chr12 981423 981556 -143300933 - FLAM_C SINE Alu -2 131 1 1174 153 74 114 chr12 981556 981790 -143300699 - Charlie5 DNA MER1_type -176 2448 2235 621 159 32 56 chr12 981793 981919 -143300570 - Charlie5 DNA MER1_type -2489 123 1 1987 113 0 7 chr12 982157 982432 -143300057 - AluSx SINE Alu -15 297 25 236 268 99 0 chr12 982693 982764 -143299725 + MER117 DNA MER1_type 15 92 -105 1783 148 19 42 chr12 982839 983149 -143299340 - AluJb SINE Alu -9 303 1 1837 145 13 43 chr12 983295 983598 -143298891 + AluSx SINE Alu 1 294 -18 2051 92 60 0 chr12 984115 984397 -143298092 - AluSc SINE Alu -10 299 1 237 143 54 54 chr12 984448 984504 -143297985 - MER46C DNA MER2_type -46 292 237 222 116 0 0 chr12 985362 985405 -143297084 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 1282 180 78 35 chr12 985407 985662 -143296827 - AluJo SINE Alu -44 268 3 1922 165 0 0 chr12 985816 986119 -143296370 - AluSx SINE Alu -9 303 1 2236 126 7 0 chr12 986397 986707 -143295782 - AluSx SINE Alu 0 312 1 1852 150 41 0 chr12 986709 987002 -143295487 - AluSx SINE Alu -7 305 1 497 233 89 47 chr12 987048 987284 -143295205 - L1MC/D LINE L1 -1989 5819 5574 2213 109 0 25 chr12 988274 988594 -143293895 - AluSx SINE Alu 0 312 1 2322 109 0 0 chr12 988638 988940 -143293549 - AluSx SINE Alu -10 302 1 2235 112 0 3 chr12 989139 989442 -143293047 - AluSx SINE Alu -10 302 1 2075 104 13 41 chr12 989842 990158 -143292331 - AluSx SINE Alu -5 307 1 326 347 132 12 chr12 990363 990768 -143291721 - L2 LINE L2 -14 3258 2773 1728 180 0 3 chr12 990779 991068 -143291421 - AluJb SINE Alu -24 288 1 962 213 53 9 chr12 991069 991294 -143291195 - Charlie1 DNA MER1_type -2522 239 5 1467 159 3 123 chr12 991357 991697 -143290792 - AluJo SINE Alu -13 299 1 1776 197 185 25 chr12 991762 991818 -143290671 - MLT1F1 LTR MaLR -8 559 513 2100 131 0 0 chr12 991818 992126 -143290363 + AluSx SINE Alu 1 308 0 1776 197 185 25 chr12 992126 992550 -143289939 - MLT1F1 LTR MaLR -54 513 1 2342 91 3 0 chr12 992852 993148 -143289341 - AluSg1 SINE Alu -12 297 1 1650 174 13 29 chr12 993411 993544 -143288945 + AluJb SINE Alu 1 135 -177 2504 50 0 7 chr12 993544 993842 -143288647 + AluY SINE Alu 1 296 -15 207 0 0 0 chr12 993845 993868 -143288621 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1650 174 13 29 chr12 993868 994041 -143288448 + AluJb SINE Alu 137 306 -6 2327 71 51 0 chr12 994799 995095 -143287394 - AluY SINE Alu 0 311 1 881 205 49 0 chr12 995474 995679 -143286810 - Charlie1 DNA MER1_type 0 2761 2547 2204 106 7 3 chr12 995695 995996 -143286493 - AluSq SINE Alu -11 302 1 1149 130 0 0 chr12 996377 996538 -143285951 - AluSx SINE Alu -151 161 1 2039 105 0 7 chr12 996549 996826 -143285663 - AluY SINE Alu -36 275 1 2068 120 33 0 chr12 996828 997127 -143285362 - AluSq SINE Alu -4 309 1 25 0 0 0 chr12 997130 997155 -143285334 + AT_rich Low_complexity Low_complexity 1 25 0 2280 113 0 3 chr12 997523 997832 -143284657 - AluSg SINE Alu -2 308 1 758 271 123 39 chr12 997969 998327 -143284162 + MER20B DNA MER1_type 44 431 -352 944 183 74 26 chr12 998369 998598 -143283891 + MER20B DNA MER1_type 544 783 0 420 306 50 6 chr12 998617 998777 -143283712 + MIR3 SINE MIR 37 203 -5 189 310 55 35 chr12 998956 999101 -143283388 + MIR SINE MIR 106 253 -9 22 0 0 0 chr12 999627 999649 -143282840 + AT_rich Low_complexity Low_complexity 1 22 0 408 286 95 14 chr12 999997 1000144 -143282345 - MIR SINE MIR -38 224 66 22 35 0 0 chr12 1000221 1000250 -143282239 + AT_rich Low_complexity Low_complexity 1 29 0 1172 171 101 19 chr12 1000852 1001109 -143281380 + MER58B DNA MER1_type 53 330 -11 663 258 154 0 chr12 1001140 1001361 -143281128 - MIR SINE MIR 0 262 8 848 156 10 116 chr12 1003844 1004043 -143278446 - MER5B DNA MER1_type 0 178 1 253 229 0 16 chr12 1004043 1004097 -143278392 - MER117 DNA MER1_type -139 58 4 2377 71 34 0 chr12 1004237 1004532 -143277957 - AluSq SINE Alu -8 305 1 383 229 95 17 chr12 1004925 1005038 -143277451 - MER5A DNA MER1_type -14 164 43 2049 81 0 4 chr12 1005242 1005503 -143276986 + AluSc SINE Alu 30 289 -20 532 261 75 25 chr12 1005636 1005797 -143276692 - MER5B DNA MER1_type -3 175 7 1601 160 0 97 chr12 1005897 1006228 -143276261 + AluJb SINE Alu 1 299 -3 1042 144 86 6 chr12 1006558 1006732 -143275757 - MER5A DNA MER1_type 0 189 2 2245 108 0 0 chr12 1007178 1007475 -143275014 + AluSq SINE Alu 1 297 -16 222 270 0 32 chr12 1009213 1009276 -143273213 - L2 LINE L2 -2 3311 3251 338 184 132 0 chr12 1009461 1009537 -143272952 + FRAM SINE Alu 56 141 -25 216 0 0 0 chr12 1009542 1009566 -143272923 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2132 139 7 0 chr12 1009660 1009970 -143272519 - AluSx SINE Alu 0 312 1 398 271 177 6 chr12 1010166 1010347 -143272142 + MIR SINE MIR 8 219 -43 989 96 0 22 chr12 1010352 1010515 -143271974 + FLAM_C SINE Alu 1 160 0 21 0 0 0 chr12 1010562 1010583 -143271906 + AT_rich Low_complexity Low_complexity 1 21 0 2156 179 36 116 chr12 1010781 1011446 -143271043 - LTR9 LTR ERV1 0 612 1 1699 149 64 14 chr12 1011620 1011916 -143270573 - AluSx SINE Alu -1 311 1 2257 117 0 0 chr12 1012076 1012384 -143270105 - AluSc SINE Alu -1 308 1 9138 141 9 96 chr12 1012454 1013280 -143269209 - L1M LINE L1 -837 5309 4413 829 186 0 14 chr12 1013280 1013425 -143269064 - FRAM SINE Alu -12 164 22 9138 141 9 96 chr12 1013425 1014535 -143267954 - L1M LINE L1 -1733 4413 3444 2411 70 6 70 chr12 1014535 1014666 -143267823 - THE1A LTR MaLR 0 355 217 3154 43 0 0 chr12 1014666 1015038 -143267451 - L1PA3 LINE L1 0 6155 5784 2411 70 6 70 chr12 1015038 1015215 -143267274 - THE1A LTR MaLR -138 217 70 2472 60 3 10 chr12 1015215 1015517 -143266972 - AluY SINE Alu -11 300 1 2411 70 6 70 chr12 1015517 1015562 -143266927 - THE1A LTR MaLR -285 70 24 1093 150 123 0 chr12 1015578 1015798 -143266691 - L1 LINE L1 -2698 4150 3904 1695 164 3 24 chr12 1015805 1016098 -143266391 + AluSx SINE Alu 1 287 -25 261 246 0 0 chr12 1016192 1016253 -143266236 + CT-rich Low_complexity Low_complexity 2 62 0 968 181 39 0 chr12 1016255 1016460 -143266029 - L1 LINE L1 -2983 3865 3653 2377 79 26 0 chr12 1016469 1016772 -143265717 - AluY SINE Alu 0 311 1 817 138 0 48 chr12 1016772 1016907 -143265582 - FLAM_C SINE Alu -177 135 6 2737 204 70 5 chr12 1016914 1017557 -143264932 - L1 LINE L1 -3186 3662 2978 1178 121 0 29 chr12 1017557 1017731 -143264758 - AluSq SINE Alu -16 297 129 210 91 0 0 chr12 1017731 1017764 -143264725 + (TATG)n Simple_repeat Simple_repeat 2 34 0 2033 128 0 3 chr12 1017768 1018056 -143264433 - AluSx SINE Alu -25 287 1 4511 152 54 151 chr12 1018057 1018715 -143263774 - L1 LINE L1 -3862 2986 2265 687 176 37 7 chr12 1018715 1018851 -143263638 - FAM SINE Alu -11 174 35 4511 152 54 151 chr12 1018851 1018901 -143263588 - L1 LINE L1 -4583 2265 2212 1452 187 28 21 chr12 1018901 1019185 -143263304 - AluJo SINE Alu -24 288 3 4511 152 54 151 chr12 1019185 1019483 -143263006 - L1 LINE L1 -4636 2212 1886 2476 99 0 0 chr12 1019483 1019795 -143262694 - AluSx SINE Alu 0 312 1 4511 152 54 151 chr12 1019795 1019975 -143262514 - L1 LINE L1 -4962 1886 1845 372 22 0 0 chr12 1019975 1020020 -143262469 + (TG)n Simple_repeat Simple_repeat 2 46 0 4511 152 54 151 chr12 1020020 1020302 -143262187 - L1 LINE L1 -5003 1845 1537 1963 194 11 3 chr12 1020302 1020678 -143261811 + L1MB5 LINE L1 5788 6166 -8 2319 110 0 0 chr12 1021049 1021349 -143261140 + AluSx SINE Alu 1 300 -12 1158 161 0 0 chr12 1021434 1021602 -143260887 - AluJo SINE Alu -144 168 1 2380 86 7 0 chr12 1022421 1022723 -143259766 - AluSg SINE Alu -5 305 2 290 286 51 51 chr12 1023998 1024085 -143258404 + L1MB8 LINE L1 5710 5796 -382 998 232 100 16 chr12 1024085 1024395 -143258094 - MER46C DNA MER2_type 0 338 3 290 286 51 51 chr12 1024395 1024562 -143257927 + L1MB8 LINE L1 5795 5964 -214 1781 153 58 7 chr12 1024785 1025080 -143257409 - AluJo SINE Alu -2 310 1 242 239 53 35 chr12 1025178 1025197 -143257292 - L1MA10 LINE L1 -1 6333 6315 2631 185 98 102 chr12 1025197 1025298 -143257191 - L1ME2 LINE L1 -10 6154 6054 238 128 0 0 chr12 1025298 1025337 -143257152 - MER3 DNA MER1_type -160 49 11 2631 185 98 102 chr12 1025337 1026244 -143256245 - L1ME2 LINE L1 -110 6054 5129 2332 107 0 0 chr12 1026313 1026613 -143255876 + AluSx SINE Alu 1 300 -12 2112 130 0 0 chr12 1027188 1027487 -143255002 - AluSx SINE Alu -13 299 1 694 126 0 0 chr12 1027515 1027610 -143254879 + AluY SINE Alu 2 96 -222 207 162 0 0 chr12 1027733 1027770 -143254719 + G-rich Low_complexity Low_complexity 2 38 0 2123 120 23 0 chr12 1027776 1028077 -143254412 + AluSx SINE Alu 3 310 -2 560 185 9 9 chr12 1028363 1028471 -143254018 + MLT1C LTR MaLR 360 467 0 412 298 129 28 chr12 1028564 1029083 -143253406 - L1ME LINE L1 -442 5720 5152 2143 109 0 7 chr12 1029095 1029379 -143253110 + AluSx SINE Alu 1 282 -30 359 288 61 102 chr12 1030118 1030208 -143252281 + MLT1L LTR MaLR 1 93 -522 2264 111 3 3 chr12 1030208 1030515 -143251974 - AluSg SINE Alu -1 309 3 1667 83 0 9 chr12 1030518 1030734 -143251755 - AluSg/x SINE Alu -6 304 91 359 288 61 102 chr12 1030734 1030903 -143251586 + MLT1L LTR MaLR 95 253 -362 627 245 43 0 chr12 1031034 1031173 -143251316 + MER45A DNA AcHobo 34 178 0 295 295 76 0 chr12 1031190 1031295 -143251194 + MLT1L LTR MaLR 493 605 -10 2299 95 7 3 chr12 1031296 1031592 -143250897 - AluSq SINE Alu -16 297 1 2461 82 0 25 chr12 1031921 1032239 -143250250 + AluSq SINE Alu 1 310 -3 1925 157 0 13 chr12 1032253 1032565 -143249924 + AluJb SINE Alu 5 312 0 565 240 84 71 chr12 1032660 1032962 -143249527 - MLT1G1 LTR MaLR -64 531 146 2276 102 0 0 chr12 1032962 1033257 -143249232 - AluSq SINE Alu -14 299 5 565 240 84 71 chr12 1033257 1033405 -143249084 - MLT1G1 LTR MaLR -449 146 1 362 297 31 0 chr12 1033874 1034002 -143248487 - MIR SINE MIR -45 217 86 397 298 18 0 chr12 1034073 1034187 -143248302 - L2 LINE L2 -1 3312 3197 1384 185 52 55 chr12 1034319 1034686 -143247803 - MER93b LTR ERV1 -7 366 1 190 219 0 0 chr12 1034688 1034729 -143247760 - L2 LINE L2 -320 2952 2912 1236 281 113 71 chr12 1034871 1035239 -143247250 - L2 LINE L2 -573 2741 2390 1578 150 29 33 chr12 1035239 1035512 -143246977 - AluJo SINE Alu -40 272 1 1236 281 113 71 chr12 1035512 1035781 -143246708 - L2 LINE L2 -924 2390 2134 2425 64 27 0 chr12 1035781 1036078 -143246411 + AluSx SINE Alu 1 305 -7 1236 281 113 71 chr12 1036078 1036115 -143246374 - L2 LINE L2 -1180 2134 2100 1388 202 114 52 chr12 1036115 1036321 -143246168 + MLT1C LTR MaLR 1 193 -274 1828 167 0 16 chr12 1036321 1036626 -143245863 + AluSx SINE Alu 1 300 -12 1388 202 114 52 chr12 1036626 1036859 -143245630 + MLT1C LTR MaLR 193 467 0 1236 281 113 71 chr12 1036859 1037014 -143245475 - L2 LINE L2 -1214 2100 1875 2451 64 3 26 chr12 1037080 1037392 -143245097 - AluY SINE Alu -6 305 1 264 59 0 0 chr12 1037439 1037473 -143245016 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1328 181 3 122 chr12 1037476 1037796 -143244693 - AluJb SINE Alu -19 283 2 548 251 54 35 chr12 1038045 1038248 -143244241 - L2 LINE L2 -2 3311 3105 26 74 0 0 chr12 1038371 1038425 -143244064 + AT_rich Low_complexity Low_complexity 1 54 0 711 241 140 26 chr12 1038570 1039031 -143243458 - L2 LINE L2 -190 3123 2629 1852 131 0 0 chr12 1039032 1039284 -143243205 + AluSx SINE Alu 2 253 -59 1467 196 11 0 chr12 1039355 1039621 -143242868 - AluJo SINE Alu -43 269 1 206 121 0 0 chr12 1039693 1039726 -143242763 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 2234 94 3 0 chr12 1039734 1040022 -143242467 - AluSg SINE Alu -21 289 1 497 206 142 179 chr12 1040248 1040439 -143242050 + MLT1J LTR MaLR 12 209 -302 2013 138 3 3 chr12 1040439 1040729 -143241760 - AluSg SINE Alu -20 290 1 1652 149 46 11 chr12 1040730 1041012 -143241477 - AluJo SINE Alu -20 292 1 497 206 142 179 chr12 1041012 1041303 -143241186 + MLT1J LTR MaLR 208 478 -33 213 271 51 0 chr12 1041442 1041501 -143240988 - L2 LINE L2 -53 3219 3158 2093 141 0 10 chr12 1041844 1042142 -143240347 + AluSx SINE Alu 3 297 -15 839 179 28 0 chr12 1042374 1042519 -143239970 - AluJb SINE Alu -32 280 132 733 176 0 0 chr12 1042533 1042658 -143239831 + AluSc SINE Alu 133 257 -52 414 160 27 0 chr12 1042653 1042728 -143239761 - BC200 scRNA scRNA -123 77 1 * 349 221 0 32 chr12 1042728 1042823 -143239666 - L1ME3A LINE L1 -230 5940 5849 2735 235 20 32 chr12 1042836 1043518 -143238971 + L1M4 LINE L1 9 682 -5860 437 248 111 0 chr12 1043523 1043640 -143238849 + L2 LINE L2 3183 3312 -1 2068 139 21 6 chr12 1043670 1044007 -143238482 - MER2 DNA MER2_type -1 343 2 22 80 0 0 chr12 1044152 1044202 -143238287 + AT_rich Low_complexity Low_complexity 1 50 0 2076 117 3 20 chr12 1044250 1044550 -143237939 + AluJo SINE Alu 1 295 -17 2101 111 6 38 chr12 1044772 1045087 -143237402 + AluSx SINE Alu 1 305 -7 27 29 0 0 chr12 1046302 1046336 -143236153 + AT_rich Low_complexity Low_complexity 1 34 0 2196 39 8 4 chr12 1046501 1046760 -143235729 - AluY SINE Alu -18 293 34 403 234 145 69 chr12 1046878 1047168 -143235321 - L2 LINE L2 0 3313 3002 2370 104 0 0 chr12 1047361 1047660 -143234829 + AluSq SINE Alu 1 299 -14 2178 202 99 8 chr12 1047949 1048434 -143234055 + MER82 DNA MER2_type 1 529 -124 2193 106 3 10 chr12 1048669 1048980 -143233509 + AluSp SINE Alu 5 313 0 2233 126 0 0 chr12 1048988 1049297 -143233192 + AluSx SINE Alu 3 311 -1 180 0 0 0 chr12 1049450 1049470 -143233019 + (A)n Simple_repeat Simple_repeat 1 20 0 1263 175 5 22 chr12 1049475 1049698 -143232791 - AluJo SINE Alu -30 282 64 229 284 35 35 chr12 1050177 1050318 -143232171 + LTR16C LTR ERVL 320 460 -31 1060 289 84 29 chr12 1050350 1050392 -143232097 + LTR16C LTR ERVL 1 39 -452 2320 97 0 7 chr12 1050392 1050690 -143231799 - AluSx SINE Alu -16 296 1 1060 289 84 29 chr12 1050690 1051063 -143231426 + LTR16C LTR ERVL 39 439 -52 1048 208 128 81 chr12 1051092 1051365 -143231124 + L1MC4 LINE L1 7326 7624 -418 2067 140 3 3 chr12 1051365 1051672 -143230817 + AluSx SINE Alu 1 307 -5 1048 208 128 81 chr12 1051672 1051782 -143230707 + L1MC4 LINE L1 7624 7727 -315 593 170 0 0 chr12 1051800 1051894 -143230595 - AluJb SINE Alu -86 226 133 237 288 93 49 chr12 1051895 1052017 -143230472 + L1MC4 LINE L1 7781 7917 -125 297 0 0 0 chr12 1052017 1052050 -143230439 + (TG)n Simple_repeat Simple_repeat 2 34 0 237 288 93 49 chr12 1052050 1052132 -143230357 + L1MC4 LINE L1 7917 7994 -48 1656 154 46 4 chr12 1052134 1052414 -143230075 - AluJo SINE Alu -20 292 1 2384 94 0 0 chr12 1052761 1053060 -143229429 + AluSg SINE Alu 3 301 -9 2198 68 0 54 chr12 1053281 1053604 -143228885 + AluSc SINE Alu 1 307 0 782 258 9 65 chr12 1053803 1054199 -143228290 + L1ME LINE L1 1182 1692 -4871 * 2640 218 85 22 chr12 1054194 1054288 -143228201 + L1ME LINE L1 4620 4707 -1691 2328 98 0 0 chr12 1054288 1054583 -143227906 - AluSp SINE Alu -18 295 1 2334 105 0 13 chr12 1054588 1054902 -143227587 - AluSq SINE Alu -3 310 1 2640 218 85 22 chr12 1054902 1055432 -143227057 + L1ME LINE L1 4710 5205 -1193 2308 98 0 3 chr12 1055432 1055727 -143226762 + AluSg SINE Alu 1 294 -16 2640 218 85 22 chr12 1055727 1056205 -143226284 + L1ME LINE L1 5205 5803 -595 2103 116 0 20 chr12 1056320 1056614 -143225875 - AluSx SINE Alu -24 288 1 310 277 85 66 chr12 1056618 1056889 -143225600 - L1M4 LINE L1 -867 5279 5004 1860 170 7 0 chr12 1056900 1057200 -143225289 + AluSx SINE Alu 2 303 -9 1583 158 37 30 chr12 1057206 1057504 -143224985 + AluJb SINE Alu 1 300 -12 230 284 45 0 chr12 1057504 1057571 -143224918 + L1ME LINE L1 5832 5901 -501 180 0 0 0 chr12 1057574 1057594 -143224895 + (A)n Simple_repeat Simple_repeat 1 20 0 498 125 38 0 chr12 1057726 1057806 -143224683 - AluS SINE Alu -5 305 223 2436 90 0 0 chr12 1058034 1058333 -143224156 + AluSq SINE Alu 1 299 -14 1238 48 0 0 chr12 1058503 1058650 -143223839 + AluY SINE Alu 158 304 -7 1121 272 108 23 chr12 1058658 1058932 -143223557 - L2 LINE L2 -381 2933 2615 2541 57 0 0 chr12 1058932 1059230 -143223259 - AluY SINE Alu -13 298 1 1121 272 108 23 chr12 1059230 1059345 -143223144 - L2 LINE L2 -699 2615 2511 2055 132 0 3 chr12 1059345 1059640 -143222849 - AluJb SINE Alu -18 294 1 1125 174 23 5 chr12 1059641 1059859 -143222630 - AluJo SINE Alu -5 307 86 795 265 31 0 chr12 1059860 1060056 -143222433 - L2 LINE L2 -796 2518 2317 326 183 50 0 chr12 1060113 1060173 -143222316 + LTR16C LTR ERVL 55 117 -374 256 262 39 19 chr12 1060419 1060522 -143221967 + MLT1L LTR MaLR 507 611 -4 494 236 180 60 chr12 1060538 1060771 -143221718 - MIR SINE MIR 0 262 2 1601 124 93 31 chr12 1060791 1061082 -143221407 + MER44D DNA MER2_type 1 579 -30 718 239 90 34 chr12 1061490 1061867 -143220622 + L2 LINE L2 1717 2207 -1107 1489 225 202 36 chr12 1061874 1061899 -143220590 + MLT1H1 LTR MaLR 1 21 -534 2321 93 0 7 chr12 1061899 1062190 -143220299 + AluSg SINE Alu 1 289 -21 1489 225 202 36 chr12 1062190 1062671 -143219818 + MLT1H1 LTR MaLR 21 555 0 303 242 126 11 chr12 1062671 1062766 -143219723 + L2 LINE L2 2209 2314 -1000 581 181 0 0 chr12 1062771 1062865 -143219624 - LTR16C LTR ERVL 0 491 398 * 978 270 78 82 chr12 1062860 1063507 -143218982 - MER50 LTR ERV1 -23 711 1 * 990 250 49 27 chr12 1063507 1063870 -143218619 - LTR16C LTR ERVL -84 407 1 272 184 0 0 chr12 1063892 1063941 -143218548 - L1MC4 LINE L1 -472 7570 7522 428 218 30 20 chr12 1063951 1064052 -143218437 + LTR40a LTR ERVL 4 105 -414 1197 50 0 69 chr12 1064054 1064214 -143218275 - AluSg SINE Alu -161 149 1 225 286 163 0 chr12 1064245 1064343 -143218146 - L1MC4a LINE L1 -1480 6328 6215 1438 140 5 14 chr12 1064380 1064602 -143217887 + AluSx SINE Alu 1 220 -92 1082 83 28 14 chr12 1064596 1064740 -143217749 + AluSg/x SINE Alu 144 289 -21 * 389 70 18 0 chr12 1064741 1064798 -143217691 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 1428 161 33 140 chr12 1064907 1065019 -143217470 + MLT1B LTR MaLR 1 123 -267 1956 147 7 3 chr12 1065019 1065318 -143217171 + AluSx SINE Alu 1 300 -12 1428 161 33 140 chr12 1065318 1065626 -143216863 + MLT1B LTR MaLR 123 376 -14 1998 70 0 0 chr12 1065627 1065868 -143216621 + AluY SINE Alu 1 241 -70 1320 118 5 5 chr12 1065868 1066094 -143216395 + AluSg/x SINE Alu 101 326 0 783 233 0 0 chr12 1066100 1066246 -143216243 - MLT1B-int LTR MaLR -128 1607 1462 2389 89 3 0 chr12 1066450 1066752 -143215737 - AluSq SINE Alu -10 303 1 1144 117 25 0 chr12 1066754 1066916 -143215573 - AluSg/x SINE Alu -6 304 139 381 64 0 0 chr12 1066954 1067001 -143215488 - MLT1B LTR MaLR 0 390 344 400 107 36 0 chr12 1067009 1067065 -143215424 - MLT1C LTR MaLR -409 58 1 1291 181 17 181 chr12 1067066 1067206 -143215283 - MLT1C-int LTR MaLR -1 1370 1209 1794 163 0 7 chr12 1067206 1067494 -143214995 + AluJb SINE Alu 1 286 -26 1291 181 17 181 chr12 1067494 1067762 -143214727 - MLT1C-int LTR MaLR -162 1209 1029 1093 123 0 25 chr12 1067765 1067967 -143214522 + AluSg/x SINE Alu 134 331 0 370 313 0 18 chr12 1067967 1068110 -143214379 - MLT1B-int LTR MaLR -334 1037 956 282 337 0 0 chr12 1068185 1068286 -143214203 - MLT1B-int LTR MaLR -958 777 677 1610 191 56 7 chr12 1068342 1068811 -143213678 - MLT1B-int LTR MaLR -484 887 238 940 117 5 143 chr12 1068814 1069010 -143213479 - AluJb SINE Alu -10 302 134 2128 131 0 0 chr12 1069010 1069307 -143213182 - AluSx SINE Alu -15 297 1 645 197 8 8 chr12 1069307 1069434 -143213055 - MLT1B-int LTR MaLR -1244 127 1 1559 193 111 14 chr12 1069437 1069568 -143212921 - MLT1B LTR MaLR -3 387 270 2328 94 7 10 chr12 1069568 1069877 -143212612 - AluSq SINE Alu -5 308 1 1559 193 111 14 chr12 1069877 1070098 -143212391 - MLT1B LTR MaLR -120 270 1 2166 148 15 38 chr12 1070128 1070358 -143212131 - L1MB3 LINE L1 -1 6182 5963 2135 107 3 13 chr12 1070358 1070657 -143211832 - AluSq SINE Alu -17 296 1 2166 148 15 38 chr12 1070657 1070818 -143211671 - L1MB3 LINE L1 -220 5963 5800 2481 61 0 3 chr12 1070826 1071122 -143211367 - AluY SINE Alu -16 295 1 1176 83 0 0 chr12 1071122 1071266 -143211223 - AluY SINE Alu -167 144 1 1253 175 22 11 chr12 1071270 1071303 -143211186 - L1MB3 LINE L1 -978 5168 5137 1651 191 0 13 chr12 1071303 1071602 -143210887 - AluJo SINE Alu -17 295 1 1253 175 22 11 chr12 1071602 1071836 -143210653 - L1MB3 LINE L1 -1009 5137 4898 180 0 0 0 chr12 1071836 1071856 -143210633 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1459 133 18 0 chr12 1071870 1072096 -143210393 - AluSq SINE Alu -83 230 1 2399 88 3 0 chr12 1072096 1072391 -143210098 - AluSp SINE Alu -17 296 1 812 169 0 0 chr12 1072403 1072521 -143209968 - FLAM_C SINE Alu -25 118 1 1727 164 10 10 chr12 1072524 1072817 -143209672 - AluJo SINE Alu -14 298 6 310 284 55 0 chr12 1073011 1073120 -143209369 - HAL1 LINE L1 -701 1806 1692 2248 98 13 13 chr12 1073121 1073426 -143209063 - AluSq SINE Alu -8 305 1 397 226 226 8 chr12 1073427 1073684 -143208805 - HAL1 LINE L1 -1010 1497 1185 1897 179 0 3 chr12 1073707 1074019 -143208470 - AluJb SINE Alu -1 311 1 353 136 0 34 chr12 1074022 1074081 -143208408 - Alu SINE Alu -2 300 244 332 163 0 0 chr12 1074078 1074127 -143208362 - Alu SINE Alu -251 49 1 * 928 241 0 19 chr12 1074130 1074346 -143208143 - AluJb SINE Alu -14 298 87 266 297 280 3 chr12 1074348 1074641 -143207848 - HAL1 LINE L1 -1357 1150 777 2465 170 28 35 chr12 1074641 1075101 -143207388 - MSTB2 LTR MaLR 0 457 1 293 329 13 0 chr12 1075570 1075649 -143206840 - HAL1 LINE L1 -2427 80 1 374 303 116 7 chr12 1075827 1075982 -143206507 - MIR3 SINE MIR -36 172 1 264 30 0 0 chr12 1077092 1077125 -143205364 + (TG)n Simple_repeat Simple_repeat 1 33 0 450 254 134 106 chr12 1077240 1077895 -143204594 - L1M2 LINE L1 -5519 1330 696 1289 126 0 6 chr12 1080195 1080370 -143202119 - AluSx SINE Alu -138 174 1 1881 200 28 45 chr12 1080382 1080556 -143201933 + LTR40c LTR ERVL 35 210 -255 2422 48 31 0 chr12 1080556 1080845 -143201644 + AluY SINE Alu 1 298 -13 1881 200 28 45 chr12 1080845 1081095 -143201394 + LTR40c LTR ERVL 210 452 -13 767 205 0 0 chr12 1081228 1081345 -143201144 - FLAM_C SINE Alu -25 118 2 320 163 50 75 chr12 1081346 1081426 -143201063 + MER112 DNA MER1_type 38 115 -145 244 233 17 0 chr12 1081426 1081486 -143201003 - MLT1F1 LTR MaLR -7 560 500 345 271 0 0 chr12 1081572 1081642 -143200847 + MER112 DNA MER1_type 186 255 -5 2309 75 56 31 chr12 1081657 1081795 -143200694 + THE1C LTR MaLR 8 141 -234 1472 131 186 8 chr12 1081795 1082047 -143200442 - AluSg1 SINE Alu -12 297 1 2309 75 56 31 chr12 1082047 1082267 -143200222 + THE1C LTR MaLR 141 375 0 261 300 104 86 chr12 1082275 1082939 -143199550 - L2 LINE L2 -661 2653 1978 2011 140 3 0 chr12 1083228 1083528 -143198961 + AluJb SINE Alu 1 301 -11 180 152 0 0 chr12 1083959 1083992 -143198497 + A-rich Low_complexity Low_complexity 1 33 0 1004 149 11 6 chr12 1084041 1084216 -143198273 - MER2 DNA MER2_type -137 208 33 444 312 48 16 chr12 1084471 1084782 -143197707 - L1M4 LINE L1 -861 5285 4965 2311 132 28 28 chr12 1084858 1084924 -143197565 - THE1B LTR MaLR 0 364 299 2071 130 10 0 chr12 1084924 1085225 -143197264 - AluSq SINE Alu -9 304 1 2311 132 28 28 chr12 1085225 1085522 -143196967 - THE1B LTR MaLR -64 300 1 597 231 124 0 chr12 1085715 1085901 -143196588 - MER46C DNA MER2_type -129 209 1 471 247 81 118 chr12 1085925 1086508 -143195981 - L1M4 LINE L1 -1429 4717 4157 851 182 0 0 chr12 1086508 1086640 -143195849 - FLAM_C SINE Alu 0 133 2 229 243 0 29 chr12 1087926 1087996 -143194493 + T-rich Low_complexity Low_complexity 1 68 0 2086 98 35 0 chr12 1088202 1088489 -143194000 + AluSx SINE Alu 1 297 -15 2354 92 0 0 chr12 1088874 1089169 -143193320 - AluSx SINE Alu -9 303 9 2119 144 28 51 chr12 1089488 1089570 -143192919 + MER7A DNA MER2_type 2 84 -2954 1581 167 30 17 chr12 1089570 1089870 -143192619 + AluJb SINE Alu 1 304 -8 2119 144 28 51 chr12 1089870 1090142 -143192347 + MER7A DNA MER2_type 84 346 0 521 279 57 13 chr12 1090971 1091129 -143191360 + MER5A DNA MER1_type 1 165 -24 2206 96 3 20 chr12 1091174 1091476 -143191013 - AluSg SINE Alu -11 299 3 214 259 19 0 chr12 1091734 1091788 -143190701 + MER5A DNA MER1_type 135 189 0 2013 142 3 19 chr12 1091994 1092169 -143190320 - AluSx SINE Alu -6 306 137 2370 91 0 3 chr12 1092169 1092465 -143190024 - AluY SINE Alu -16 295 1 2013 142 3 19 chr12 1092465 1092600 -143189889 - AluSx SINE Alu -175 137 1 1087 131 12 0 chr12 1092600 1092760 -143189729 - AluSg/x SINE Alu -17 293 132 2276 94 10 3 chr12 1092760 1093059 -143189430 - AluSx SINE Alu -11 301 1 829 211 0 0 chr12 1093424 1093557 -143188932 + FLAM_A SINE Alu 1 133 0 26 30 0 0 chr12 1093557 1093590 -143188899 + AT_rich Low_complexity Low_complexity 1 33 0 2521 58 0 0 chr12 1094770 1095064 -143187425 + AluY SINE Alu 1 294 -17 2254 103 0 3 chr12 1095504 1095805 -143186684 - AluSq SINE Alu -13 300 1 295 233 217 16 chr12 1096639 1096768 -143185721 + L3 LINE CR1 1134 1288 -289 2367 71 0 7 chr12 1096892 1097189 -143185300 + AluY SINE Alu 1 295 -16 198 0 0 0 chr12 1097193 1097215 -143185274 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 505 269 38 19 chr12 1097215 1097375 -143185114 + AluJb SINE Alu 130 292 -20 985 79 67 79 chr12 1098837 1099015 -143183474 - Tigger2a DNA MER2_type -57 387 212 1907 114 0 0 chr12 1099018 1099273 -143183216 + AluSc SINE Alu 3 257 -52 242 145 29 87 chr12 1099285 1099354 -143183135 + AluSc SINE Alu 237 301 -1 * 1217 167 17 43 chr12 1099332 1099566 -143182923 - Tigger2a DNA MER2_type -206 228 1 2210 108 0 0 chr12 1099988 1100283 -143182206 - AluSg SINE Alu 0 310 16 395 332 79 8 chr12 1102141 1102394 -143180095 + L1MB1 LINE L1 5098 5368 -778 342 293 126 24 chr12 1103532 1103699 -143178790 + L1MB1 LINE L1 5575 5758 -2050 2081 155 71 3 chr12 1103729 1104083 -143178406 - L1MB3 LINE L1 -1 6182 5805 2325 78 3 0 chr12 1104096 1104390 -143178099 + THE1A LTR MaLR 1 295 -60 959 122 0 0 chr12 1104387 1104518 -143177971 + THE1A LTR MaLR 223 353 -2 * 397 304 40 16 chr12 1104582 1104707 -143177782 - MIR SINE MIR -61 147 20 460 224 91 91 chr12 1105141 1105246 -143177243 + MIR SINE MIR 53 157 -105 1183 179 52 9 chr12 1105246 1105475 -143177014 + L1MB1 LINE L1 5929 6167 -1 460 224 91 91 chr12 1105475 1105579 -143176910 + MIR SINE MIR 156 262 0 2099 111 4 0 chr12 1105628 1105931 -143176558 - AluSg SINE Alu 0 304 1 1017 70 39 0 chr12 1105931 1106059 -143176430 - AluSg SINE Alu -177 133 1 2221 114 3 10 chr12 1106091 1106397 -143176092 - AluSq SINE Alu -9 304 1 22 0 0 0 chr12 1108020 1108042 -143174447 + AT_rich Low_complexity Low_complexity 1 22 0 1688 149 0 55 chr12 1108278 1108587 -143173902 - AluJo SINE Alu 0 312 21 180 111 0 0 chr12 1108608 1108635 -143173854 + (TTG)n Simple_repeat Simple_repeat 1 27 0 186 133 0 0 chr12 1109077 1109107 -143173382 + (TTA)n Simple_repeat Simple_repeat 2 31 0 180 111 0 0 chr12 1110860 1110887 -143171602 + (TTA)n Simple_repeat Simple_repeat 2 28 0 588 95 0 0 chr12 1113073 1113157 -143169332 + (TTA)n Simple_repeat Simple_repeat 2 85 0 1971 108 41 0 chr12 1113160 1113429 -143169060 - AluSx SINE Alu -32 280 1 246 355 127 23 chr12 1113565 1113785 -143168704 - L2 LINE L2 -260 3053 2811 423 289 90 25 chr12 1113910 1114111 -143168378 - L2 LINE L2 -540 2774 2561 2415 77 0 0 chr12 1114239 1114537 -143167952 - AluSg SINE Alu -12 298 1 735 303 47 7 chr12 1114540 1114837 -143167652 + HsTC2 DNA Tc2 5 313 -1585 647 193 30 86 chr12 1114844 1114919 -143167570 + HsTC2 DNA Tc2 1707 1785 -113 1936 146 17 0 chr12 1114919 1115214 -143167275 + AluSx SINE Alu 1 300 -12 647 193 30 86 chr12 1115214 1115335 -143167154 + HsTC2 DNA Tc2 1785 1892 -6 510 157 0 0 chr12 1116105 1116226 -143166263 + (TA)n Simple_repeat Simple_repeat 2 122 0 2209 115 0 0 chr12 1116263 1116559 -143165930 - AluSx SINE Alu -16 296 1 2088 135 7 3 chr12 1116647 1116950 -143165539 - AluSx SINE Alu -8 304 1 1868 122 0 0 chr12 1117391 1117637 -143164852 + AluSx SINE Alu 4 249 -63 1855 158 17 7 chr12 1118171 1118468 -143164021 - AluJb SINE Alu -12 300 1 367 312 39 44 chr12 1118941 1119146 -143163343 - L1ME3A LINE L1 -5 6165 5962 812 291 91 65 chr12 1119386 1119942 -143162547 - L1MEc LINE L1 -5485 911 326 2215 106 0 13 chr12 1119942 1120253 -143162236 - AluSx SINE Alu -3 309 3 812 291 91 65 chr12 1120253 1120507 -143161982 - L1MEc LINE L1 -6070 326 80 1492 289 116 42 chr12 1120535 1121414 -143161075 - L2 LINE L2 -550 2764 1821 29 0 0 0 chr12 1121428 1121457 -143161032 + AT_rich Low_complexity Low_complexity 1 29 0 183 80 0 0 chr12 1121465 1121490 -143160999 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 279 273 91 9 chr12 1121574 1121684 -143160805 + Charlie2 DNA MER1_type 94 212 -2650 2324 250 180 11 chr12 1121840 1122076 -143160413 - L2 LINE L2 -1 3312 3117 2405 90 0 6 chr12 1122076 1122388 -143160101 - AluSg SINE Alu 0 310 1 2324 250 180 11 chr12 1122388 1123352 -143159137 - L2 LINE L2 -196 3117 1888 793 304 37 72 chr12 1123490 1123973 -143158516 - LTR67 LTR ERVL -87 470 5 438 301 147 6 chr12 1124068 1124224 -143158265 + MER91A DNA MER1_type 19 196 0 659 250 37 28 chr12 1124836 1125052 -143157437 - L2 LINE L2 -4 3309 3092 526 278 19 44 chr12 1125132 1125402 -143157087 - L1MC5 LINE L1 -48 7913 7651 1222 262 118 19 chr12 1125452 1125936 -143156553 - L2 LINE L2 -363 2951 2420 764 171 0 0 chr12 1125959 1126076 -143156413 - FLAM_C SINE Alu -24 119 3 241 242 81 0 chr12 1126076 1126175 -143156314 - L2 LINE L2 -950 2364 2258 277 184 0 0 chr12 1127297 1127346 -143155143 - Charlie1 DNA MER1_type 0 2761 2713 * 723 126 59 0 chr12 1127335 1127454 -143155035 - Charlie1 DNA MER1_type -865 1896 1771 298 116 58 43 chr12 1127565 1127634 -143154855 + AluSp/q SINE Alu 221 290 -13 1303 111 6 6 chr12 1127668 1127849 -143154640 + AluSx SINE Alu 6 186 -126 2294 94 7 3 chr12 1127903 1128210 -143154279 + AluSq SINE Alu 3 310 -3 1508 166 150 17 chr12 1128352 1128713 -143153776 + L1MB7 LINE L1 5732 6140 -44 1465 125 167 0 chr12 1128714 1128954 -143153535 + AluSg SINE Alu 1 280 -30 1843 137 7 0 chr12 1129003 1129295 -143153194 - AluSx SINE Alu -18 294 1 454 168 0 56 chr12 1129347 1129454 -143153035 - AluJb SINE Alu -7 305 205 2400 60 0 3 chr12 1130586 1130884 -143151605 + AluY SINE Alu 1 297 -14 903 137 0 0 chr12 1130885 1131009 -143151480 - AluJo/FLAM SINE Alu -188 124 1 1030 96 10 96 chr12 1131010 1131219 -143151270 - L1MA7 LINE L1 -122 6169 5979 1081 79 0 0 chr12 1131222 1131348 -143151141 - AluSp SINE Alu -187 126 1 657 163 120 34 chr12 1131349 1131406 -143151083 - L1 LINE L1 -745 5401 5350 1553 180 7 40 chr12 1131406 1131706 -143150783 - AluJo SINE Alu -20 292 3 657 163 120 34 chr12 1131706 1131857 -143150632 - L1 LINE L1 -796 5350 5175 * 816 229 81 34 chr12 1131854 1132177 -143150312 - L1 LINE L1 -2848 3298 2961 1463 180 31 66 chr12 1132244 1132561 -143149928 - AluJo SINE Alu -6 306 1 803 161 0 0 chr12 1132572 1132696 -143149793 - FLAM_A SINE Alu -9 124 1 673 226 48 6 chr12 1132735 1132903 -143149586 + MLT1C LTR MaLR 1 175 -292 1869 138 17 17 chr12 1132907 1133198 -143149291 + AluSq SINE Alu 1 291 -22 254 130 0 19 chr12 1133198 1133252 -143149237 + (GGGAA)n Simple_repeat Simple_repeat 1 53 0 1900 109 4 4 chr12 1133501 1133758 -143148731 - AluSq SINE Alu -56 257 1 276 206 52 0 chr12 1134178 1134270 -143148219 + HsTC2 DNA Tc2 14 1835 -63 2628 34 3 0 chr12 1134483 1134778 -143147711 + AluY SINE Alu 1 296 -15 507 158 18 70 chr12 1135006 1135120 -143147369 + MER3 DNA MER1_type 38 145 -64 316 203 127 17 chr12 1135697 1135815 -143146674 - L1M4 LINE L1 -780 5366 5236 2300 84 0 20 chr12 1136018 1136317 -143146172 + AluSc SINE Alu 3 295 -14 1842 103 58 0 chr12 1136390 1136651 -143145838 + AluSx SINE Alu 11 286 -26 1459 140 17 92 chr12 1136683 1136884 -143145605 - Tigger3(Golem) DNA MER2_type -956 275 101 2130 98 11 0 chr12 1136884 1137160 -143145329 - AluSc SINE Alu -30 279 1 1459 140 17 92 chr12 1137160 1137250 -143145239 - Tigger3(Golem) DNA MER2_type -1130 101 6 1825 156 24 0 chr12 1137294 1137582 -143144907 - AluSg SINE Alu 0 310 16 2126 135 10 0 chr12 1138476 1138772 -143143717 - AluSq SINE Alu -14 299 1 498 125 38 0 chr12 1139000 1139080 -143143409 + AluS SINE Alu 225 307 -5 1008 236 11 15 chr12 1190369 1190640 -143091849 - L1MEc LINE L1 -5509 887 618 698 185 122 70 chr12 1190661 1190796 -143091693 + Charlie1 DNA MER1_type 2472 2599 -162 1897 141 10 36 chr12 1190796 1191102 -143091387 - AluJo SINE Alu -14 298 1 698 185 122 70 chr12 1191102 1191179 -143091310 + Charlie1 DNA MER1_type 2599 2671 -90 2278 100 3 0 chr12 1191179 1191478 -143091011 - AluSp SINE Alu -13 300 1 698 185 122 70 chr12 1191478 1191534 -143090955 + Charlie1 DNA MER1_type 2671 2755 -6 338 176 28 65 chr12 1191845 1191921 -143090568 - L1MEc LINE L1 -5997 208 136 1258 203 128 40 chr12 1191921 1192350 -143090139 + MLT1C LTR MaLR 1 467 0 338 176 28 65 chr12 1192350 1192381 -143090108 - L1MEc LINE L1 -6069 136 105 233 350 75 12 chr12 1192931 1193011 -143089478 + L2 LINE L2 3141 3225 -47 226 393 98 6 chr12 1193001 1193164 -143089325 + L2 LINE L2 2680 2857 -457 * 2371 97 0 0 chr12 1193538 1193847 -143088642 - AluSc SINE Alu 0 309 1 292 306 9 54 chr12 1193850 1193961 -143088528 + MIR SINE MIR 64 169 -93 2331 67 7 10 chr12 1194018 1194315 -143088174 + AluSx SINE Alu 1 296 -16 349 109 77 13 chr12 1194336 1194492 -143087997 + (TA)n Simple_repeat Simple_repeat 1 166 0 248 154 31 15 chr12 1194503 1194568 -143087921 + (TTATA)n Simple_repeat Simple_repeat 4 69 0 344 107 87 17 chr12 1194578 1194869 -143087620 + (TA)n Simple_repeat Simple_repeat 1 311 0 284 294 83 9 chr12 1195306 1195415 -143087074 + MIR SINE MIR 12 128 -134 3055 171 11 11 chr12 1195514 1196064 -143086425 + MER44D DNA MER2_type 1 605 0 1185 140 77 31 chr12 1196790 1197012 -143085477 - MER46A DNA MER2_type -4 232 1 946 175 22 11 chr12 1197156 1197339 -143085150 + MER33 DNA MER1_type 2 186 -138 472 197 228 0 chr12 1197751 1197878 -143084611 + MER5A DNA MER1_type 31 186 -3 299 130 0 0 chr12 1197888 1197934 -143084555 + tRNA-Gln-CAG tRNA tRNA 1 46 -29 1185 259 93 19 chr12 1198796 1199279 -143083210 - L1MC/D LINE L1 -2014 5794 5276 1848 139 0 17 chr12 1199361 1199649 -143082840 - AluSx SINE Alu -24 288 6 25 0 0 0 chr12 1199657 1199682 -143082807 + AT_rich Low_complexity Low_complexity 1 25 0 399 159 0 0 chr12 1199683 1199746 -143082743 - FLAM_A SINE Alu -34 99 37 468 0 0 0 chr12 1199780 1199832 -143082657 + (TG)n Simple_repeat Simple_repeat 2 53 0 676 315 116 35 chr12 1199897 1200526 -143081963 - L1MC/D LINE L1 -1316 4830 4151 6546 152 33 28 chr12 1200709 1201065 -143081424 - L1PB1 LINE L1 -1 6150 5798 345 100 0 0 chr12 1201065 1201115 -143081374 + (TA)n Simple_repeat Simple_repeat 1 50 0 6546 152 33 28 chr12 1201115 1201474 -143081015 - L1PB1 LINE L1 -353 5798 5443 2351 85 0 0 chr12 1201474 1201767 -143080722 - AluSx SINE Alu -19 293 1 6546 152 33 28 chr12 1201767 1203071 -143079418 - L1PB1 LINE L1 -708 5443 4103 4348 43 2 6 chr12 1203071 1203609 -143078880 - L1PA4 LINE L1 0 6155 5620 6546 152 33 28 chr12 1203609 1203852 -143078637 - L1PB1 LINE L1 -2048 4103 3863 914 136 11 87 chr12 1204642 1204826 -143077663 - THE1B LTR MaLR 0 364 195 24 0 0 0 chr12 1205040 1205064 -143077425 + AT_rich Low_complexity Low_complexity 1 24 0 2151 111 0 0 chr12 1205064 1205352 -143077137 - AluSx SINE Alu -24 288 1 27 0 0 0 chr12 1205592 1205619 -143076870 + AT_rich Low_complexity Low_complexity 1 27 0 1902 150 3 3 chr12 1205858 1206144 -143076345 - AluJb SINE Alu -21 291 6 22 0 0 0 chr12 1206936 1206958 -143075531 + AT_rich Low_complexity Low_complexity 1 22 0 2207 218 29 21 chr12 1207049 1207572 -143074917 + L1MC3 LINE L1 7258 7784 -1 2277 102 0 3 chr12 1208367 1208671 -143073818 + AluSq SINE Alu 1 303 -10 1719 130 18 11 chr12 1210387 1210663 -143071826 - L1PB3 LINE L1 -94 6060 5783 360 0 0 0 chr12 1210664 1210704 -143071785 + (TATATG)n Simple_repeat Simple_repeat 1 40 0 230 326 0 0 chr12 1210704 1210790 -143071699 + L1MC4 LINE L1 6615 6700 -1342 252 0 0 0 chr12 1210805 1210833 -143071656 + (CA)n Simple_repeat Simple_repeat 2 29 0 2692 138 77 30 chr12 1210836 1211486 -143071003 + L1P5 LINE L1 4962 5652 -502 1840 142 36 26 chr12 1211486 1211789 -143070700 + AluSx SINE Alu 1 306 -6 2692 138 77 30 chr12 1211789 1211922 -143070567 + L1P5 LINE L1 5652 5777 -377 2322 65 17 3 chr12 1211927 1212221 -143070268 - AluY SINE Alu -13 298 1 34 0 0 0 chr12 1212313 1212347 -143070142 + AT_rich Low_complexity Low_complexity 1 34 0 26 30 0 0 chr12 1212522 1212555 -143069934 + AT_rich Low_complexity Low_complexity 1 33 0 1989 127 7 7 chr12 1212678 1212987 -143069502 - AluSg SINE Alu 0 309 1 330 307 77 29 chr12 1213122 1213455 -143069034 - L1M4 LINE L1 -660 5518 5174 1195 191 4 27 chr12 1213546 1213802 -143068687 - AluJb SINE Alu -9 303 54 230 311 0 0 chr12 1213907 1213981 -143068508 - L1P LINE L1 -1186 4960 4887 562 250 55 0 chr12 1214156 1214284 -143068205 - L2 LINE L2 -1278 2036 1902 261 297 226 13 chr12 1214282 1214437 -143068052 + L3 LINE CR1 1251 1438 -139 * 22 35 0 0 chr12 1214638 1214667 -143067822 + AT_rich Low_complexity Low_complexity 1 29 0 383 295 114 32 chr12 1214727 1214871 -143067618 - HAL1b LINE L1 -523 825 694 2194 81 3 69 chr12 1214871 1215203 -143067286 - AluSp SINE Alu -3 310 1 383 295 114 32 chr12 1215203 1215339 -143067150 - HAL1b LINE L1 -654 694 522 2071 161 3 3 chr12 1215651 1215973 -143066516 - MER1B DNA MER1_type -17 322 1 217 263 70 0 chr12 1216003 1216060 -143066429 - L3 LINE CR1 -267 1310 1250 189 295 16 16 chr12 1216166 1216227 -143066262 - L3 LINE CR1 -691 886 826 217 283 0 0 chr12 1216278 1216338 -143066151 + MIR SINE MIR 92 151 -111 246 358 129 0 chr12 1216567 1216768 -143065721 - L3 LINE CR1 -797 780 554 1660 130 103 4 chr12 1216907 1217169 -143065320 + AluSx SINE Alu 5 292 -20 904 147 0 7 chr12 1217210 1217346 -143065143 - FLAM_C SINE Alu -8 135 1 21 57 0 0 chr12 1218330 1218365 -143064124 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr12 1219157 1219179 -143063310 + AT_rich Low_complexity Low_complexity 1 22 0 424 233 60 0 chr12 1219926 1220042 -143062447 - MLT1G LTR MaLR -11 579 457 2087 149 3 0 chr12 1220157 1220465 -143062024 - AluSx SINE Alu -3 309 1 327 256 97 67 chr12 1220486 1220681 -143061808 - MLT1G LTR MaLR -303 287 87 2266 64 7 0 chr12 1220682 1221090 -143061399 - AluY SINE Alu 0 410 1 312 140 0 0 chr12 1221175 1221225 -143061264 - MLT1G LTR MaLR -533 62 13 2311 46 0 87 chr12 1221759 1222082 -143060407 - AluY SINE Alu -15 296 2 870 201 115 0 chr12 1222252 1222461 -143060028 - L1MB7 LINE L1 -19 6165 5933 661 125 133 0 chr12 1222443 1222571 -143059918 + THE1B-int LTR MaLR 1436 1580 0 * 1967 139 50 36 chr12 1222571 1222930 -143059559 + THE1B LTR MaLR 1 364 0 1171 169 12 4 chr12 1222931 1223180 -143059309 - L1M4 LINE L1 -2085 4061 3811 2101 109 3 3 chr12 1224156 1224460 -143058029 - AluSc SINE Alu -1 308 5 1602 195 7 13 chr12 1224575 1224873 -143057616 - AluJb SINE Alu -16 296 1 2315 101 3 7 chr12 1224930 1225236 -143057253 - AluSq SINE Alu -8 305 1 894 269 100 3 chr12 1225743 1226052 -143056437 + LTR16A LTR ERVL 106 444 -6 247 333 41 20 chr12 1226570 1226765 -143055724 - L1ME4a LINE L1 -198 5923 5725 221 232 125 0 chr12 1226898 1226954 -143055535 - MER91C DNA MER1_type -33 107 45 221 325 112 0 chr12 1227426 1227521 -143054968 - MIR SINE MIR -18 190 75 213 39 0 0 chr12 1227804 1227830 -143054659 + (T)n Simple_repeat Simple_repeat 1 26 0 1688 211 7 0 chr12 1228638 1228936 -143053553 + AluJo SINE Alu 1 300 -12 24 53 0 0 chr12 1229201 1229239 -143053250 + AT_rich Low_complexity Low_complexity 1 38 0 210 244 44 0 chr12 1229654 1229699 -143052790 + MIR SINE MIR 5 51 -211 * 232 293 13 0 chr12 1229696 1229771 -143052718 + MIR SINE MIR 153 228 -34 12794 123 36 70 chr12 1231357 1231986 -143050503 - Tigger1 DNA MER2_type 0 2418 1769 2295 94 0 3 chr12 1231986 1232285 -143050204 - AluSq SINE Alu -15 298 1 12794 123 36 70 chr12 1232285 1233029 -143049460 - Tigger1 DNA MER2_type -649 1769 1001 902 229 0 0 chr12 1233029 1233195 -143049294 - FRAM SINE Alu 0 166 1 12794 123 36 70 chr12 1233195 1234323 -143048166 - Tigger1 DNA MER2_type -1417 1001 1 590 219 21 139 chr12 1235186 1235423 -143047066 + L2 LINE L2 3104 3312 -1 260 352 19 0 chr12 1235757 1235865 -143046624 + L2 LINE L2 2691 2800 -514 2815 16 0 0 chr12 1235946 1236257 -143046232 - AluYa5 SINE Alu 0 311 1 220 291 0 18 chr12 1236274 1236329 -143046160 + L2 LINE L2 3219 3272 0 270 0 0 0 chr12 1236704 1236734 -143045755 + (TG)n Simple_repeat Simple_repeat 1 30 0 2060 118 11 3 chr12 1237276 1237563 -143044926 - AluSx SINE Alu -23 289 1 2125 99 57 0 chr12 1237967 1238249 -143044240 + AluSp SINE Alu 1 298 -15 1690 151 11 35 chr12 1239111 1239396 -143043093 - AluJo SINE Alu -13 299 22 25 65 0 0 chr12 1239661 1239707 -143042782 + AT_rich Low_complexity Low_complexity 1 46 0 742 186 16 0 chr12 1240184 1240313 -143042176 + AluJo/FLAM SINE Alu 2 132 -170 2366 80 0 7 chr12 1240313 1240614 -143041875 + AluSg SINE Alu 10 308 -2 21 36 0 0 chr12 1240768 1240796 -143041693 + AT_rich Low_complexity Low_complexity 1 28 0 1542 185 36 26 chr12 1241192 1241375 -143041114 - AluJo SINE Alu -1 311 122 2179 109 0 0 chr12 1241375 1241659 -143040830 - AluSg SINE Alu -26 284 1 1542 185 36 26 chr12 1241659 1241783 -143040706 - AluJo SINE Alu -190 122 1 25 0 0 0 chr12 1242182 1242207 -143040282 + AT_rich Low_complexity Low_complexity 1 25 0 2022 143 0 13 chr12 1243277 1243585 -143038904 - AluSx SINE Alu -8 304 1 775 188 0 0 chr12 1243884 1244017 -143038472 - FLAM_C SINE Alu 0 133 1 549 362 72 29 chr12 1244175 1244454 -143038035 - L2 LINE L2 0 3272 2982 30 0 0 0 chr12 1244505 1244535 -143037954 + AT_rich Low_complexity Low_complexity 1 30 0 266 290 15 8 chr12 1244836 1244967 -143037522 + L1MEc LINE L1 41 172 -6224 627 199 0 30 chr12 1245532 1245663 -143036826 - FLAM_C SINE Alu -6 127 1 326 289 107 0 chr12 1248435 1248556 -143033933 - MIR3 SINE MIR -65 143 10 282 233 0 0 chr12 1249880 1249966 -143032523 + (CATA)n Simple_repeat Simple_repeat 2 87 0 23 0 0 0 chr12 1249981 1250004 -143032485 + AT_rich Low_complexity Low_complexity 1 23 0 683 261 19 97 chr12 1250017 1250389 -143032100 - MLT2C1 LTR ERVL -51 346 4 2305 90 0 3 chr12 1250588 1250912 -143031577 + AluSx SINE Alu 1 323 0 214 277 0 62 chr12 1251451 1251516 -143030973 - L2 LINE L2 -250 3063 3003 786 175 27 33 chr12 1251563 1251746 -143030743 - L1ME1 LINE L1 -9 6157 5976 436 285 76 37 chr12 1251869 1252308 -143030181 + MLT1L LTR MaLR 116 615 0 1748 169 24 3 chr12 1252948 1253238 -143029251 - AluJb SINE Alu -14 298 3 594 91 0 0 chr12 1253257 1253356 -143029133 + (TC)n Simple_repeat Simple_repeat 2 100 0 513 0 0 0 chr12 1253356 1253413 -143029076 + (CA)n Simple_repeat Simple_repeat 2 58 0 2190 138 0 0 chr12 1253427 1253731 -143028758 - AluSx SINE Alu -8 304 1 188 301 68 27 chr12 1253755 1253828 -143028661 - MIR SINE MIR -151 111 36 219 36 0 0 chr12 1254353 1254381 -143028108 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1760 168 14 7 chr12 1254387 1254678 -143027811 - AluJb SINE Alu -19 293 1 2213 113 87 8 chr12 1255038 1255418 -143027071 - MSTA LTR MaLR 0 428 19 594 94 0 0 chr12 1255420 1255505 -143026984 - MSTA LTR MaLR -325 103 19 618 71 0 0 chr12 1255507 1255592 -143026897 - MSTA LTR MaLR -325 103 19 615 71 0 0 chr12 1255594 1255679 -143026810 - MSTA LTR MaLR -325 103 19 726 87 0 0 chr12 1255681 1255784 -143026705 - MSTA LTR MaLR -325 103 1 2279 97 0 26 chr12 1255939 1256250 -143026239 + AluSq SINE Alu 1 303 -10 2498 56 0 0 chr12 1257004 1257308 -143025181 - AluY SINE Alu -7 304 1 236 243 14 14 chr12 1257406 1257480 -143025009 + (TA)n Simple_repeat Simple_repeat 2 75 0 399 175 29 29 chr12 1257647 1257750 -143024739 + MER104 DNA Tc2 31 133 -47 1908 169 7 0 chr12 1258826 1259122 -143023367 + AluJb SINE Alu 1 298 -14 23 0 0 0 chr12 1259174 1259197 -143023292 + AT_rich Low_complexity Low_complexity 1 23 0 2254 91 0 0 chr12 1259521 1259808 -143022681 - AluSx SINE Alu -25 287 1 352 278 91 32 chr12 1261468 1261655 -143020834 - MIR SINE MIR 0 262 65 351 203 0 0 chr12 1261810 1261889 -143020600 + (TA)n Simple_repeat Simple_repeat 1 79 0 221 287 35 0 chr12 1262770 1262853 -143019636 + MIR SINE MIR 79 164 -98 801 100 77 8 chr12 1263331 1263461 -143019028 + MER85 DNA T2_type 1 139 0 414 105 92 0 chr12 1264306 1264382 -143018107 + MER53 DNA DNA 1 83 -106 466 321 49 16 chr12 1264476 1264660 -143017829 - MIR SINE MIR -39 223 34 1287 129 53 31 chr12 1264691 1264916 -143017573 - MER30 DNA MER1_type 0 230 1 1162 93 6 47 chr12 1265234 1265406 -143017083 - AluSq SINE Alu -13 300 136 2282 105 0 0 chr12 1265408 1265703 -143016786 - AluSx SINE Alu -1 311 17 391 260 182 13 chr12 1266068 1266222 -143016267 - MER5A DNA MER1_type 0 189 10 2123 105 31 3 chr12 1267164 1267450 -143015039 + AluSc SINE Alu 1 294 -15 2232 77 7 3 chr12 1267612 1267898 -143014591 - AluSp SINE Alu -26 287 1 2050 126 0 32 chr12 1268011 1268320 -143014169 - AluSq SINE Alu -14 299 1 2126 128 21 3 chr12 1268989 1269326 -143013163 - MER61A LTR ERV1 0 343 1 2057 134 0 3 chr12 1269907 1270206 -143012283 + AluSx SINE Alu 3 300 -12 1134 139 6 0 chr12 1270208 1270381 -143012108 + AluSg/x SINE Alu 135 308 -2 230 319 113 34 chr12 1270660 1270898 -143011591 + MIR SINE MIR 5 261 -1 26 64 0 0 chr12 1271053 1271100 -143011389 + AT_rich Low_complexity Low_complexity 1 47 0 348 24 0 0 chr12 1271112 1271153 -143011336 + (CA)n Simple_repeat Simple_repeat 2 42 0 480 355 56 21 chr12 1271183 1271417 -143011072 - MIR SINE MIR -15 247 6 2476 318 100 35 chr12 1274068 1275328 -143007161 + L2 LINE L2 866 2268 -1046 2318 105 0 0 chr12 1275328 1275623 -143006866 - AluSx SINE Alu -17 295 1 2476 318 100 35 chr12 1275623 1276080 -143006409 + L2 LINE L2 2268 2694 -620 1271 148 10 5 chr12 1276086 1276288 -143006201 - AluJb SINE Alu -10 302 100 485 304 217 34 chr12 1276347 1276848 -143005641 + L2 LINE L2 2720 3310 -3 605 247 181 0 chr12 1277072 1277254 -143005235 + MER58C DNA MER1_type 1 215 0 886 286 95 14 chr12 1277323 1277680 -143004809 + L2 LINE L2 2925 3310 -3 1313 187 78 33 chr12 1278323 1278654 -143003835 - MER7A DNA MER2_type -1 345 2 1945 119 51 10 chr12 1278670 1278965 -143003524 - AluSx SINE Alu -5 307 1 275 273 0 0 chr12 1279490 1279556 -143002933 - L2 LINE L2 -3 3310 3245 360 331 173 0 chr12 1279854 1279993 -143002496 - MER5A DNA MER1_type -15 174 12 220 200 0 0 chr12 1280698 1280738 -143001751 + (CA)n Simple_repeat Simple_repeat 1 40 0 21 36 0 0 chr12 1281065 1281093 -143001396 + AT_rich Low_complexity Low_complexity 1 28 0 1746 161 39 32 chr12 1281149 1281459 -143001030 + AluJo SINE Alu 1 312 0 1591 178 44 0 chr12 1281628 1281898 -143000591 + AluJo SINE Alu 1 282 -30 396 0 0 0 chr12 1281900 1281944 -143000545 + (CA)n Simple_repeat Simple_repeat 2 45 0 1801 152 44 39 chr12 1282720 1283129 -142999360 - L1MA9 LINE L1 0 7731 7321 2010 142 7 0 chr12 1283132 1283427 -142999062 - AluSx SINE Alu -15 297 1 4954 138 51 36 chr12 1283427 1284795 -142997694 - L1MA9 LINE L1 -487 7244 5858 4046 182 44 9 chr12 1284802 1285659 -142996830 - L1MA9 LINE L1 -1806 5759 4873 1293 194 38 19 chr12 1285693 1285956 -142996533 + AluJo SINE Alu 24 291 -21 4078 232 80 74 chr12 1285981 1286455 -142996034 - L1MA9 LINE L1 -2703 4862 4392 2222 102 27 0 chr12 1286455 1286749 -142995740 - AluSx SINE Alu -10 302 1 4078 232 80 74 chr12 1286749 1288198 -142994291 - L1MA9 LINE L1 -3173 4392 2928 2205 93 3 3 chr12 1288198 1288488 -142994001 - AluY SINE Alu -20 291 2 4078 232 80 74 chr12 1288488 1289313 -142993176 - L1MA9 LINE L1 -4637 2928 2109 2258 119 0 0 chr12 1289641 1289944 -142992545 + AluSx SINE Alu 3 305 -7 557 257 72 64 chr12 1289999 1290497 -142991992 + L1MC5 LINE L1 7265 7766 -195 1041 186 32 6 chr12 1290613 1290898 -142991591 + MER47B DNA MER2_type 29 418 0 395 320 46 5 chr12 1291020 1291214 -142991275 + L1ME LINE L1 4610 4811 -1335 687 303 90 23 chr12 1291429 1291537 -142990952 + L1ME LINE L1 5051 5150 -1012 1618 188 35 0 chr12 1291537 1291824 -142990665 + AluJb SINE Alu 1 297 -15 687 303 90 23 chr12 1291824 1292400 -142990089 + L1ME LINE L1 5150 5787 -375 316 281 12 0 chr12 1293717 1293799 -142988690 + CT-rich Low_complexity Low_complexity 3 85 0 357 345 36 12 chr12 1294013 1294178 -142988311 - MIR SINE MIR -74 188 20 189 306 61 61 chr12 1295245 1295392 -142987097 - MIR SINE MIR -50 212 66 278 267 0 17 chr12 1295467 1295527 -142986962 + MIR SINE MIR 21 79 -129 1028 171 239 13 chr12 1295546 1295806 -142986683 - AluJo SINE Alu 0 302 1 1257 217 37 10 chr12 1295896 1296196 -142986293 + AluJo SINE Alu 1 308 -4 479 217 21 146 chr12 1296199 1296265 -142986224 + L1MC4 LINE L1 6737 6810 -1217 758 242 21 11 chr12 1296265 1296451 -142986038 - MER5A DNA MER1_type -1 188 1 479 217 21 146 chr12 1296451 1296624 -142985865 + L1MC4 LINE L1 6810 7012 -1015 289 196 161 42 chr12 1296687 1296830 -142985659 + L1MC5 LINE L1 7758 7917 -44 23 0 0 0 chr12 1297170 1297193 -142985296 + AT_rich Low_complexity Low_complexity 1 23 0 1955 97 48 14 chr12 1298295 1298584 -142983905 - AluSx SINE Alu 0 312 14 203 160 100 0 chr12 1299068 1299118 -142983371 + MIR SINE MIR 158 212 -50 1254 203 86 52 chr12 1299172 1299356 -142983133 - MER2 DNA MER2_type 0 345 144 2891 16 0 0 chr12 1299356 1299674 -142982815 + AluYb8 SINE Alu 1 318 0 1254 203 86 52 chr12 1299674 1299815 -142982674 - MER2 DNA MER2_type -201 144 9 691 221 91 5 chr12 1300075 1300274 -142982215 + MER20 DNA MER1_type 1 216 -3 1697 149 29 18 chr12 1300948 1301269 -142981220 - AluSx SINE Alu 0 324 1 345 226 65 19 chr12 1301764 1301919 -142980570 - L1ME3A LINE L1 -205 5965 5804 300 147 21 126 chr12 1302319 1302384 -142980105 - Charlie1 DNA MER1_type -7 2754 2700 838 124 0 29 chr12 1302384 1302521 -142979968 - FLAM_C SINE Alu 0 133 1 300 147 21 126 chr12 1302521 1302550 -142979939 - Charlie1 DNA MER1_type -61 2700 2670 552 263 66 14 chr12 1302554 1302767 -142979722 + L1MC4a LINE L1 5597 5820 -1988 2412 237 68 58 chr12 1302775 1303433 -142979056 + L1MC4a LINE L1 6906 7577 -231 787 227 152 19 chr12 1303433 1303697 -142978792 + AluJb SINE Alu 2 300 -2 2412 237 68 58 chr12 1303697 1303931 -142978558 + L1MC4a LINE L1 7577 7807 -1 2264 103 3 0 chr12 1304165 1304466 -142978023 + AluSp SINE Alu 1 302 -11 656 275 85 43 chr12 1304647 1304952 -142977537 - L2 LINE L2 -1 3312 2995 239 309 120 46 chr12 1304998 1305173 -142977316 - L2 LINE L2 -478 2836 2649 246 370 22 11 chr12 1305207 1305299 -142977190 - L2 LINE L2 -36 3236 3144 24 0 0 0 chr12 1305323 1305347 -142977142 + AT_rich Low_complexity Low_complexity 1 24 0 1555 155 11 33 chr12 1305347 1305618 -142976871 - AluJo SINE Alu -24 288 24 2399 133 6 3 chr12 1306134 1306488 -142976001 - MLT1A1 LTR MaLR -2 363 9 31 26 0 0 chr12 1306993 1307031 -142975458 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chr12 1308424 1308457 -142974032 + AT_rich Low_complexity Low_complexity 1 33 0 1075 216 0 0 chr12 1308458 1308676 -142973813 - L1MA4 LINE L1 -14 6286 6069 2257 102 3 0 chr12 1309845 1310140 -142972349 + AluSp SINE Alu 1 296 -17 292 51 0 0 chr12 1310884 1310923 -142971566 + MADE1 DNA Mariner 42 80 0 695 107 52 68 chr12 1310940 1310954 -142971535 - L1MA9 LINE L1 0 6312 6299 1873 138 3 3 chr12 1310954 1311243 -142971246 - AluSx SINE Alu -3 309 21 695 107 52 68 chr12 1311243 1311396 -142971093 - L1MA9 LINE L1 -13 6299 6141 6606 74 28 0 chr12 1311396 1312072 -142970417 - L1PA7 LINE L1 0 6154 5463 2466 50 0 23 chr12 1312072 1312374 -142970115 - AluY SINE Alu -1 310 16 6606 74 28 0 chr12 1312374 1312660 -142969829 - L1PA7 LINE L1 -691 5463 5187 695 107 52 68 chr12 1312660 1312698 -142969791 - L1MA9 LINE L1 -171 6141 6104 1656 249 111 16 chr12 1313393 1313888 -142968601 + MLT1F LTR MaLR 1 542 0 1425 167 75 3 chr12 1314205 1314499 -142967990 - MER33 DNA MER1_type -8 316 2 1382 238 173 65 chr12 1315532 1315963 -142966526 - HAL1 LINE L1 0 2507 2124 2418 81 3 7 chr12 1315963 1316273 -142966216 - AluSg SINE Alu -1 309 1 1382 238 173 65 chr12 1316273 1316839 -142965650 - HAL1 LINE L1 -383 2124 1402 300 27 0 0 chr12 1318108 1318145 -142964344 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 2356 102 0 6 chr12 1320126 1320440 -142962049 - AluSq SINE Alu -1 312 1 2625 24 0 7 chr12 1320831 1321129 -142961360 + AluY SINE Alu 1 296 -15 3277 178 64 13 chr12 1321867 1322614 -142959875 - L1MC2 LINE L1 -11 6333 5549 21 0 0 0 chr12 1322810 1322831 -142959658 + AT_rich Low_complexity Low_complexity 1 21 0 2525 87 0 0 chr12 1322843 1323155 -142959334 - AluSx SINE Alu 0 312 1 1676 181 0 14 chr12 1323926 1324218 -142958271 + AluJo SINE Alu 1 288 -24 335 331 24 116 chr12 1324796 1325047 -142957442 - L2 LINE L2 -16 3256 3029 1320 103 0 0 chr12 1325061 1325236 -142957253 + AluY SINE Alu 127 301 -10 582 297 117 51 chr12 1325519 1326118 -142956371 - L2 LINE L2 0 3313 2605 521 284 186 18 chr12 1326123 1326398 -142956091 + Charlie2 DNA MER1_type 6 326 -2536 2143 195 74 58 chr12 1326419 1326667 -142955822 + Charlie2 DNA MER1_type 1924 2166 -696 2015 120 7 7 chr12 1326667 1326958 -142955531 - AluSx SINE Alu -21 291 1 2143 195 74 58 chr12 1326958 1327561 -142954928 + Charlie2 DNA MER1_type 2166 2789 -73 452 345 43 5 chr12 1327734 1327943 -142954546 - L2 LINE L2 -739 2575 2359 699 204 98 0 chr12 1328017 1328149 -142954340 - FAM SINE Alu -27 158 14 331 339 35 29 chr12 1328149 1328320 -142954169 + L2 LINE L2 2237 2408 -906 463 293 144 13 chr12 1328479 1328708 -142953781 + MIR SINE MIR 4 262 0 2237 128 0 0 chr12 1329118 1329423 -142953066 + AluSg SINE Alu 1 305 -5 253 280 53 27 chr12 1329666 1329848 -142952641 + L1MC4 LINE L1 6544 6812 -1081 820 214 41 0 chr12 1329956 1330152 -142952337 + MER3 DNA MER1_type 1 204 -5 231 114 0 0 chr12 1330170 1330205 -142952284 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 430 342 98 52 chr12 1330677 1330915 -142951574 - L2 LINE L2 -1 3312 3087 2016 155 0 0 chr12 1330915 1331241 -142951248 - AluSg SINE Alu 0 310 1 430 342 98 52 chr12 1331241 1331449 -142951040 - L2 LINE L2 -226 3087 2845 474 318 115 75 chr12 1331468 1331656 -142950833 - L2 LINE L2 -432 2882 2703 1849 111 0 0 chr12 1331656 1331899 -142950590 + AluSx SINE Alu 1 243 -69 474 318 115 75 chr12 1331899 1332153 -142950336 - L2 LINE L2 -611 2703 2422 1023 112 25 6 chr12 1332154 1332315 -142950174 - MSTB1 LTR MaLR 0 432 269 552 293 39 85 chr12 1332578 1332675 -142949814 + L2 LINE L2 2998 3098 -215 2393 80 3 10 chr12 1332675 1332989 -142949500 - AluSx SINE Alu 0 312 1 552 293 39 85 chr12 1332989 1333222 -142949267 + L2 LINE L2 3098 3313 0 21 0 0 0 chr12 1336109 1336130 -142946359 + AT_rich Low_complexity Low_complexity 1 21 0 2313 92 0 22 chr12 1336130 1336444 -142946045 - AluSg SINE Alu -3 307 1 264 359 61 8 chr12 1336922 1337049 -142945440 + MIR SINE MIR 27 135 -73 259 243 14 27 chr12 1337149 1337223 -142945266 + (CA)n Simple_repeat Simple_repeat 1 73 0 739 260 61 22 chr12 1338644 1338897 -142943592 + MIR SINE MIR 2 262 0 5759 114 22 39 chr12 1340224 1340716 -142941773 - L1MA4 LINE L1 -5 6295 5796 396 0 0 0 chr12 1340716 1340760 -142941729 + (TG)n Simple_repeat Simple_repeat 2 45 0 5759 114 22 39 chr12 1340760 1341139 -142941350 - L1MA4 LINE L1 -504 5796 5440 1232 178 170 0 chr12 1341139 1341380 -142941109 - AluJo SINE Alu -30 282 1 5759 114 22 39 chr12 1341380 1341545 -142940944 - L1MA4 LINE L1 -860 5440 5274 572 309 80 60 chr12 1341816 1342485 -142940004 + L1M4 LINE L1 3175 3872 -2274 2111 124 0 0 chr12 1342485 1342767 -142939722 + AluSx SINE Alu 24 305 -7 572 309 80 60 chr12 1342767 1343102 -142939387 + L1M4 LINE L1 3872 4199 -1947 670 241 118 14 chr12 1343406 1343754 -142938735 + L1M4 LINE L1 4660 5043 -1103 1562 214 53 69 chr12 1343808 1344332 -142938157 + MLT2B1 LTR ERVL 1 516 -4 491 128 0 0 chr12 1344400 1344486 -142938003 + L1M4 LINE L1 4614 4699 -1447 997 99 0 0 chr12 1344734 1344865 -142937624 - AluSq/x SINE Alu -182 131 1 423 0 0 0 chr12 1345535 1345582 -142936907 + (CA)n Simple_repeat Simple_repeat 2 48 0 223 161 21 32 chr12 1345621 1345714 -142936775 + (TA)n Simple_repeat Simple_repeat 1 92 0 30 0 0 0 chr12 1348638 1348668 -142933821 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr12 1348849 1348877 -142933612 + AT_rich Low_complexity Low_complexity 1 28 0 2394 60 0 57 chr12 1349179 1349315 -142933174 + AluSq SINE Alu 1 143 -170 2385 88 3 0 chr12 1349315 1349611 -142932878 + AluSg SINE Alu 1 297 -13 2394 60 0 57 chr12 1349611 1349623 -142932866 + AluSq SINE Alu 143 154 -159 2301 71 4 0 chr12 1349623 1349930 -142932559 + AluY SINE Alu 1 308 0 2394 60 0 57 chr12 1349930 1350096 -142932393 + AluSq SINE Alu 154 299 -14 298 239 54 43 chr12 1351468 1351560 -142930929 + MIR SINE MIR 100 192 -70 309 245 57 9 chr12 1352362 1352468 -142930021 + L1M4b LINE L1 1381 1491 -5368 1087 210 0 15 chr12 1352589 1352784 -142929705 + AluJb SINE Alu 97 288 -24 1277 280 58 42 chr12 1352793 1352852 -142929637 + L1M4b LINE L1 1715 1772 -5366 2235 84 47 0 chr12 1352852 1353150 -142929339 - AluSp SINE Alu -1 312 1 1277 280 58 42 chr12 1353150 1353870 -142928619 + L1M4b LINE L1 1772 2551 -4587 1617 177 10 45 chr12 1353870 1354180 -142928309 + AluJb SINE Alu 1 299 -13 1277 280 58 42 chr12 1354180 1354380 -142928109 + L1M4b LINE L1 2551 2746 -4392 787 260 0 0 chr12 1354393 1354566 -142927923 + FRAM SINE Alu 1 170 -6 2721 234 100 43 chr12 1354598 1354710 -142927779 + L1M4b LINE L1 2736 2840 -4117 2245 112 0 3 chr12 1354710 1355023 -142927466 + AluSx SINE Alu 1 312 0 2721 234 100 43 chr12 1355023 1356425 -142926064 + L1M4b LINE L1 2840 4302 -2655 2019 142 19 6 chr12 1356424 1357800 -142924689 + L1PB3 LINE L1 4649 6151 -3 * 3165 110 21 14 chr12 1357801 1358284 -142924205 + L1PA13 LINE L1 5678 6163 0 1734 280 54 7 chr12 1358288 1359009 -142923480 + L1M4b LINE L1 4286 5040 -1917 2766 134 18 26 chr12 1359018 1359136 -142923353 - Tigger1 DNA MER2_type -1 2417 2300 1722 156 21 3 chr12 1359136 1359424 -142923065 + AluJo SINE Alu 1 293 -19 2766 134 18 26 chr12 1359424 1359805 -142922684 - Tigger1 DNA MER2_type -118 2300 1922 2336 84 0 10 chr12 1359805 1360114 -142922375 + AluY SINE Alu 1 306 -5 2362 83 10 0 chr12 1360124 1360424 -142922065 + AluSp SINE Alu 1 303 -10 2414 50 30 0 chr12 1361230 1361530 -142920959 - AluY SINE Alu -2 309 1 180 97 0 0 chr12 1363174 1363205 -142919284 + (T)n Simple_repeat Simple_repeat 1 31 0 246 62 0 0 chr12 1364652 1364684 -142917805 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1484 227 146 25 chr12 1364953 1365268 -142917221 - MER119 DNA MER1_type 0 583 308 2024 183 5 11 chr12 1365268 1365635 -142916854 + MLT1A1 LTR MaLR 1 365 0 1484 227 146 25 chr12 1365635 1365839 -142916650 - MER119 DNA MER1_type -275 308 1 22 0 0 0 chr12 1366165 1366187 -142916302 + AT_rich Low_complexity Low_complexity 1 22 0 680 252 33 33 chr12 1366219 1366373 -142916116 + MIR SINE MIR 15 172 -90 1538 85 0 0 chr12 1366373 1366606 -142915883 - AluY SINE Alu 0 324 92 680 252 33 33 chr12 1366606 1366660 -142915829 + MIR SINE MIR 171 224 -38 306 0 0 0 chr12 1366660 1366694 -142915795 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1665 108 77 19 chr12 1366701 1366961 -142915528 - AluSx SINE Alu -37 275 1 220 306 42 14 chr12 1367611 1367683 -142914806 + MIR SINE MIR 24 97 -165 1844 136 11 0 chr12 1368844 1369109 -142913380 - AluSx SINE Alu -44 268 1 323 282 77 77 chr12 1369505 1369884 -142912605 - MLT1J LTR MaLR -105 406 28 31 16 0 66 chr12 1370126 1370156 -142912333 + AT_rich Low_complexity Low_complexity 1 27 -30 2058 113 7 0 chr12 1370156 1370438 -142912051 + AluSx SINE Alu 3 286 -26 31 16 0 66 chr12 1370438 1370468 -142912021 + AT_rich Low_complexity Low_complexity 27 57 0 261 304 51 0 chr12 1370614 1370693 -142911796 + MIR SINE MIR 71 153 -109 262 292 0 17 chr12 1370695 1370815 -142911674 + L1ME LINE L1 5311 5428 -2380 261 291 137 11 chr12 1370838 1371013 -142911476 + L1ME LINE L1 5457 5653 -468 21 0 0 0 chr12 1371232 1371253 -142911236 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr12 1371491 1371517 -142910972 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1636 134 13 0 chr12 1371535 1371767 -142910722 - AluSx SINE Alu -77 235 1 1853 87 0 0 chr12 1371792 1372046 -142910443 - AluSx SINE Alu 0 309 56 240 100 0 0 chr12 1372162 1372202 -142910287 + (GA)n Simple_repeat Simple_repeat 2 41 0 2119 87 17 3 chr12 1372348 1372637 -142909852 - AluY SINE Alu -18 293 1 31 0 0 0 chr12 1372905 1372936 -142909553 + AT_rich Low_complexity Low_complexity 1 31 0 5404 33 5 17 chr12 1373037 1373328 -142909161 + L1PA7 LINE L1 5496 5789 -365 2450 90 0 3 chr12 1373328 1373639 -142908850 + AluSq SINE Alu 1 310 -3 5404 33 5 17 chr12 1373639 1374011 -142908478 + L1PA7 LINE L1 5789 6151 -3 491 318 49 28 chr12 1376374 1376847 -142905642 - L1MC4a LINE L1 -297 5824 5467 368 200 98 166 chr12 1376880 1377145 -142905344 - L1MC4a LINE L1 -1981 5827 5581 2538 65 0 0 chr12 1377145 1377451 -142905038 - AluY SINE Alu -5 306 1 297 324 37 22 chr12 1377643 1377779 -142904710 + MIR SINE MIR 102 239 -23 329 264 145 0 chr12 1378585 1378744 -142903745 + MIR SINE MIR 75 256 -6 273 333 17 11 chr12 1378770 1378887 -142903602 - MIR SINE MIR -79 129 7 414 314 117 89 chr12 1383957 1384575 -142897914 + L2 LINE L2 2033 2632 -682 200 31 62 0 chr12 1384575 1384607 -142897882 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1568 201 18 7 chr12 1384611 1384894 -142897595 - AluJb SINE Alu -26 286 1 414 314 117 89 chr12 1384894 1385089 -142897400 + L2 LINE L2 2634 2874 -440 2321 98 3 3 chr12 1385462 1385767 -142896722 + AluSx SINE Alu 1 305 -7 310 273 30 0 chr12 1385935 1386034 -142896455 - MIR SINE MIR -42 220 119 202 311 137 26 chr12 1386129 1386319 -142896170 - L2 LINE L2 -648 2666 2456 198 0 0 0 chr12 1386893 1386915 -142895574 + (TTA)n Simple_repeat Simple_repeat 2 23 0 243 295 0 0 chr12 1387035 1387096 -142895393 + CT-rich Low_complexity Low_complexity 3 63 0 360 258 70 51 chr12 1387149 1387405 -142895084 - L1MEd LINE L1 -4890 1229 969 1062 275 29 52 chr12 1387453 1387936 -142894553 - L1ME3A LINE L1 -5 6165 5694 351 273 106 42 chr12 1388466 1388921 -142893568 - HAL1 LINE L1 -1201 1306 823 17664 174 22 78 chr12 1389328 1389781 -142892708 - L1PA13 LINE L1 -4 6810 6334 2466 77 0 0 chr12 1389781 1390081 -142892408 - AluSc SINE Alu -9 300 1 17664 174 22 78 chr12 1390081 1392333 -142890156 - L1PA13 LINE L1 -480 6334 3959 288 0 0 0 chr12 1392333 1392365 -142890124 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 17664 174 22 78 chr12 1392365 1393254 -142889235 - L1PA13 LINE L1 -2855 3959 3022 1957 138 24 0 chr12 1393254 1393413 -142889076 - AluSx SINE Alu -16 296 125 195 42 0 0 chr12 1393413 1393437 -142889052 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1957 138 24 0 chr12 1393437 1393566 -142888923 - AluSx SINE Alu -187 125 1 17664 174 22 78 chr12 1393566 1397204 -142885285 - L1PA13 LINE L1 -3792 3022 8 740 173 0 16 chr12 1397223 1397350 -142885139 - FLAM_C SINE Alu -18 125 1 1839 86 0 16 chr12 1397532 1397777 -142884712 - AluSc SINE Alu 0 309 69 3903 54 6 8 chr12 1397777 1398276 -142884213 + L1PA6 LINE L1 5655 6152 -2 25 31 0 0 chr12 1398506 1398538 -142883951 + AT_rich Low_complexity Low_complexity 1 32 0 2509 73 0 13 chr12 1398633 1398948 -142883541 + AluSx SINE Alu 1 311 -1 185 364 18 0 chr12 1399306 1399361 -142883128 - L2 LINE L2 -580 2734 2679 2352 72 7 0 chr12 1400300 1400591 -142881898 - AluY SINE Alu -18 293 1 430 319 33 42 chr12 1401134 1401347 -142881142 - MIR SINE MIR -6 256 46 288 309 0 8 chr12 1401413 1401539 -142880950 - HAL1b LINE L1 -31 1317 1193 261 222 209 0 chr12 1401542 1401631 -142880858 - HAL1b LINE L1 -203 1145 1076 2446 63 0 10 chr12 1401631 1401933 -142880556 - AluY SINE Alu -12 299 1 261 222 209 0 chr12 1401933 1401996 -142880493 - HAL1b LINE L1 -272 1076 961 344 299 123 21 chr12 1402120 1402404 -142880085 - HAL1b LINE L1 -542 806 494 198 0 0 0 chr12 1402610 1402632 -142879857 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2751 10 0 0 chr12 1403111 1403412 -142879077 + AluYb8 SINE Alu 1 301 -17 228 91 0 0 chr12 1403707 1403740 -142878749 + U2 snRNA snRNA 1 33 -155 992 121 23 0 chr12 1403792 1403966 -142878523 - L1MA8 LINE L1 -2 6289 6112 2154 112 3 0 chr12 1404152 1404446 -142878043 + AluSx SINE Alu 1 295 -17 2144 96 3 23 chr12 1404855 1405157 -142877332 + AluSq SINE Alu 1 296 -17 2209 87 13 13 chr12 1405832 1406131 -142876358 + AluSg SINE Alu 1 299 -11 2809 137 11 9 chr12 1407145 1407599 -142874890 - MSTB2 LTR MaLR 0 457 3 1812 148 38 1 chr12 1407753 1408117 -142874372 - L1M3 LINE L1 -501 5667 5290 443 113 0 0 chr12 1408134 1408205 -142874284 - L1MA5A LINE L1 -5 6292 6222 554 221 0 7 chr12 1408211 1408356 -142874133 - L1M3 LINE L1 -819 5327 5184 193 200 0 25 chr12 1408709 1408749 -142873740 + L2 LINE L2 3225 3263 -9 2633 58 0 0 chr12 1409469 1409780 -142872709 - AluY SINE Alu 0 311 1 337 270 80 135 chr12 1409802 1410165 -142872324 + L3 LINE CR1 1232 1574 -3 539 326 150 11 chr12 1410183 1410649 -142871840 + L2 LINE L2 1779 2309 -1005 210 265 10 78 chr12 1410655 1410692 -142871797 + MIR SINE MIR 164 202 -60 2063 133 3 0 chr12 1410692 1410986 -142871503 + AluSq SINE Alu 1 295 -18 210 265 10 78 chr12 1410986 1411050 -142871439 + MIR SINE MIR 202 258 -4 1564 141 36 0 chr12 1411122 1411370 -142871119 - AluSx SINE Alu -33 279 23 250 226 129 77 chr12 1411482 1411522 -142870967 - MER103 DNA DNA -1 165 129 1071 155 89 118 chr12 1411522 1411870 -142870619 - MER58B DNA MER1_type -3 338 1 250 226 129 77 chr12 1411870 1411984 -142870505 - MER103 DNA DNA -37 129 3 1847 155 24 3 chr12 1412374 1412664 -142869825 + AluJb SINE Alu 1 296 -16 306 0 0 0 chr12 1412664 1412698 -142869791 + (TG)n Simple_repeat Simple_repeat 2 35 0 759 205 86 0 chr12 1414530 1414681 -142867808 + FAM SINE Alu 11 174 -11 194 229 42 0 chr12 1415021 1415069 -142867420 - MER5A DNA MER1_type -88 101 52 1380 239 75 19 chr12 1415815 1416188 -142866301 - MSTD LTR MaLR -1 395 2 281 289 10 10 chr12 1416820 1416917 -142865572 - MARNA DNA Mariner -94 492 396 1537 167 19 69 chr12 1417251 1417568 -142864921 + AluJb SINE Alu 1 301 -11 1643 38 0 14 chr12 1417666 1417875 -142864614 + L1PA4 LINE L1 5950 6155 0 21 0 0 0 chr12 1417875 1417896 -142864593 + AT_rich Low_complexity Low_complexity 1 21 0 396 55 0 0 chr12 1418880 1418935 -142863554 + (TC)n Simple_repeat Simple_repeat 1 55 0 1492 188 28 9 chr12 1419030 1419350 -142863139 + L1MB3 LINE L1 5857 6182 -1 312 276 36 63 chr12 1419500 1419658 -142862831 - L1ME1 LINE L1 -127 6039 5893 2010 144 0 10 chr12 1419994 1420306 -142862183 - AluJb SINE Alu -3 309 1 270 333 171 17 chr12 1421217 1421451 -142861038 - L3 LINE CR1 -11 1566 1297 441 310 0 0 chr12 1421897 1422010 -142860479 - L2 LINE L2 -9 3304 3192 2253 142 78 2 chr12 1422236 1422674 -142859815 + L1MB2 LINE L1 5701 6171 0 210 71 0 0 chr12 1424396 1424424 -142858065 + (T)n Simple_repeat Simple_repeat 1 28 0 270 154 115 0 chr12 1424758 1424836 -142857653 + L1ME4a LINE L1 6031 6117 -4 1783 131 55 24 chr12 1427172 1427463 -142855026 - AluJb SINE Alu -12 300 1 1693 158 20 0 chr12 1427483 1427781 -142854708 - L1MB1 LINE L1 -1 6167 5864 487 273 31 37 chr12 1427818 1427979 -142854510 + MIR SINE MIR 32 191 -71 206 274 41 41 chr12 1427998 1428071 -142854418 + MIR SINE MIR 119 191 -71 214 264 42 42 chr12 1428090 1428162 -142854327 + MIR SINE MIR 119 190 -72 189 292 42 42 chr12 1428182 1428254 -142854235 + MIR SINE MIR 119 190 -72 549 164 9 0 chr12 1428944 1429054 -142853435 + L1MB3 LINE L1 6072 6182 -1 2263 120 0 0 chr12 1429950 1430259 -142852230 + AluSc SINE Alu 1 309 0 216 67 0 0 chr12 1431275 1431305 -142851184 + (T)n Simple_repeat Simple_repeat 1 30 0 1576 153 64 53 chr12 1431553 1431913 -142850576 - THE1B LTR MaLR 0 364 1 270 289 141 21 chr12 1431928 1432070 -142850419 + MIR SINE MIR 57 215 -47 2238 99 0 3 chr12 1432184 1432486 -142850003 - AluSg1 SINE Alu -8 301 1 624 249 83 5 chr12 1435621 1435826 -142846663 - MLT1F-int LTR MaLR -855 516 296 300 265 18 71 chr12 1435842 1436012 -142846477 - MLT1F-int LTR MaLR -1210 161 1 576 203 49 14 chr12 1436012 1436155 -142846334 - MLT1F LTR MaLR -2 540 393 716 248 31 53 chr12 1436160 1436386 -142846103 - MLT1F LTR MaLR -321 221 1 618 221 38 0 chr12 1436387 1436545 -142845944 + L1ME2 LINE L1 5756 5919 -245 577 174 0 97 chr12 1437791 1437946 -142844543 - FLAM_C SINE Alu 0 143 4 316 337 34 0 chr12 1438536 1438625 -142843864 + MIR3 SINE MIR 6 97 -111 311 296 76 12 chr12 1438771 1438943 -142843546 - Charlie8 DNA MER1_type -2157 260 78 250 290 29 0 chr12 1439027 1439096 -142843393 + MIR3 SINE MIR 103 173 -35 22 0 0 0 chr12 1439266 1439288 -142843201 + AT_rich Low_complexity Low_complexity 1 22 0 1135 145 0 0 chr12 1439933 1440099 -142842390 + AluSg/x SINE Alu 130 295 -15 715 264 94 24 chr12 1440291 1440503 -142841986 - MIR SINE MIR -35 227 1 2519 26 0 10 chr12 1441733 1442035 -142840454 - AluY SINE Alu -12 299 1 2348 105 3 0 chr12 1442482 1442787 -142839702 - AluSg SINE Alu -4 306 1 2230 113 0 13 chr12 1442816 1443116 -142839373 + AluSx SINE Alu 1 296 -16 416 255 61 66 chr12 1443121 1443317 -142839172 - L1ME3A LINE L1 -36 6134 5940 1543 200 58 81 chr12 1443370 1443815 -142838674 + MLT1D-int LTR MaLR 937 1371 0 1105 235 154 28 chr12 1443861 1444295 -142838194 + MLT1D LTR MaLR 17 505 0 2279 59 55 3 chr12 1444530 1444819 -142837670 + AluY SINE Alu 1 304 -7 299 329 13 87 chr12 1444953 1445263 -142837226 - L2 LINE L2 -464 2850 2564 309 232 58 29 chr12 1445274 1445416 -142837073 - MLT1J2 LTR MaLR -18 423 295 403 345 76 29 chr12 1445561 1445836 -142836653 - L2 LINE L2 -862 2452 2165 22 0 0 0 chr12 1446570 1446592 -142835897 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 1446785 1446808 -142835681 + AT_rich Low_complexity Low_complexity 1 23 0 29 90 0 0 chr12 1446834 1446912 -142835577 + AT_rich Low_complexity Low_complexity 1 78 0 1696 226 103 17 chr12 1447521 1448418 -142834071 - L1MDa LINE L1 -5415 1125 119 1145 194 118 0 chr12 1448466 1448781 -142833708 - MER31A LTR ERV1 -6 479 128 1782 145 7 24 chr12 1449696 1449985 -142832504 + AluJb SINE Alu 1 284 -28 378 0 0 0 chr12 1450058 1450100 -142832389 + (TG)n Simple_repeat Simple_repeat 2 43 0 2307 67 40 3 chr12 1450197 1450495 -142831994 + AluY SINE Alu 2 310 -1 2497 63 3 0 chr12 1450569 1450872 -142831617 + AluY SINE Alu 1 304 -7 1801 146 140 29 chr12 1450932 1451317 -142831172 + MSTA LTR MaLR 1 428 0 294 355 59 13 chr12 1452850 1453002 -142829487 - L2 LINE L2 0 3272 3114 372 331 47 39 chr12 1453109 1453493 -142828996 + L1MEd LINE L1 144 530 -5589 1996 267 67 23 chr12 1453580 1454422 -142828067 + L1MC4a LINE L1 5462 6340 -1468 1932 130 18 0 chr12 1454450 1454734 -142827755 - AluJb SINE Alu -23 289 1 366 312 76 73 chr12 1454779 1455080 -142827409 + L1MC4a LINE L1 6401 6702 -1106 699 180 65 40 chr12 1455083 1455283 -142827206 - MLT1A1 LTR MaLR -3 362 158 1876 160 3 22 chr12 1455384 1455702 -142826787 - AluJo SINE Alu 0 312 1 2962 183 29 87 chr12 1455772 1457363 -142825126 - L1MB7 LINE L1 -15 6169 4672 2581 55 3 0 chr12 1457374 1457684 -142824805 - AluY SINE Alu 0 311 1 198 191 0 0 chr12 1457742 1457789 -142824700 + (TAG)n Simple_repeat Simple_repeat 2 48 0 22 35 0 0 chr12 1457925 1457954 -142824535 + AT_rich Low_complexity Low_complexity 1 29 0 724 286 113 0 chr12 1457954 1458167 -142824322 + MIR SINE MIR 20 256 -6 473 211 119 32 chr12 1458273 1458458 -142824031 + L1MEd LINE L1 943 1143 -4976 425 225 116 25 chr12 1458573 1458699 -142823790 + L1MEd LINE L1 2893 3006 -3123 2224 105 26 0 chr12 1458699 1459003 -142823486 + AluSx SINE Alu 1 312 0 425 225 116 25 chr12 1459003 1459065 -142823424 + L1MEd LINE L1 3006 3061 -3068 279 0 0 0 chr12 1459065 1459096 -142823393 + (CA)n Simple_repeat Simple_repeat 2 32 0 425 225 116 25 chr12 1459096 1459190 -142823299 + L1MEd LINE L1 3061 3202 -2927 192 234 0 0 chr12 1459636 1459683 -142822806 + CT-rich Low_complexity Low_complexity 2 48 0 991 247 9 0 chr12 1460497 1460716 -142821773 - MLT1A1 LTR MaLR 0 365 145 375 181 0 0 chr12 1460733 1460805 -142821684 + (TTTA)n Simple_repeat Simple_repeat 2 73 0 407 143 0 0 chr12 1461100 1461170 -142821319 - L1PA16 LINE L1 -2 6164 6095 678 162 11 123 chr12 1461174 1461307 -142821182 - MLT1A1 LTR MaLR -206 159 47 1967 132 3 7 chr12 1461307 1461640 -142820849 + AluSx SINE Alu 1 332 0 678 162 11 123 chr12 1461640 1461683 -142820806 - MLT1A1 LTR MaLR -318 47 1 2171 108 3 0 chr12 1461872 1462160 -142820329 + AluSx SINE Alu 1 289 -23 790 149 0 45 chr12 1462219 1462353 -142820136 + FLAM_C SINE Alu 1 128 -5 249 211 0 0 chr12 1462378 1462435 -142820054 + (TA)n Simple_repeat Simple_repeat 2 58 0 866 282 16 37 chr12 1462496 1462741 -142819748 - MIR SINE MIR -1 261 22 1288 167 13 34 chr12 1463108 1463342 -142819147 + AluJo SINE Alu 71 299 -13 736 144 0 0 chr12 1463861 1463972 -142818517 + FLAM_A SINE Alu 6 116 -26 27 0 0 0 chr12 1463972 1463999 -142818490 + AT_rich Low_complexity Low_complexity 1 27 0 1068 249 69 39 chr12 1464071 1464433 -142818056 - MLT1A2 LTR MaLR -1 373 1 1387 135 120 68 chr12 1466016 1466155 -142816334 + MER2 DNA MER2_type 1 131 -213 2055 131 0 0 chr12 1466155 1466459 -142816030 - AluSx SINE Alu 0 304 1 1387 135 120 68 chr12 1466459 1466585 -142815904 + MER2 DNA MER2_type 131 289 -55 216 97 0 0 chr12 1466585 1466616 -142815873 + (TA)n Simple_repeat Simple_repeat 1 31 0 1387 135 120 68 chr12 1466616 1466673 -142815816 + MER2 DNA MER2_type 289 342 -2 465 326 21 0 chr12 1468896 1469037 -142813452 + MIR SINE MIR 4 147 -115 778 297 33 0 chr12 1469055 1469267 -142813222 + MIR SINE MIR 13 231 -31 220 234 0 0 chr12 1469301 1469348 -142813141 + MIR SINE MIR 210 256 -6 213 219 110 68 chr12 1469366 1469439 -142813050 - MIR3 SINE MIR -45 163 88 1994 144 6 10 chr12 1469762 1470074 -142812415 + AluSx SINE Alu 1 311 -1 1602 191 21 50 chr12 1470266 1470321 -142812168 - MLT1A1 LTR MaLR 0 365 310 2159 132 12 21 chr12 1470321 1470661 -142811828 - MER1B DNA MER1_type 0 337 1 1602 191 21 50 chr12 1470661 1470981 -142811508 - MLT1A1 LTR MaLR -55 310 1 238 211 18 18 chr12 1471124 1471181 -142811308 + CT-rich Low_complexity Low_complexity 1 57 0 430 252 45 18 chr12 1471181 1471292 -142811197 + L2 LINE L2 3183 3296 -17 210 37 0 0 chr12 1471295 1471322 -142811167 + (TG)n Simple_repeat Simple_repeat 2 28 0 345 221 90 26 chr12 1472338 1472506 -142809983 - MIR SINE MIR -6 256 4 623 187 37 86 chr12 1473143 1473330 -142809159 + MIR SINE MIR 83 260 -2 2261 116 0 3 chr12 1473948 1474249 -142808240 + AluSx SINE Alu 1 300 -12 629 296 13 52 chr12 1474314 1474547 -142807942 - MIR SINE MIR -2 260 37 1072 209 105 83 chr12 1474653 1475016 -142807473 + MER39 LTR ERV1 1 354 -211 1198 44 19 0 chr12 1475016 1475176 -142807313 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 1786 147 0 11 chr12 1475179 1475464 -142807025 - AluJo SINE Alu -30 282 1 1072 209 105 83 chr12 1475464 1475607 -142806882 + MER39 LTR ERV1 355 563 -2 1135 130 6 0 chr12 1476101 1476270 -142806219 + L1MB2 LINE L1 5995 6164 -7 2235 109 0 0 chr12 1476886 1477205 -142805284 - AluY SINE Alu 0 311 1 1473 138 40 4 chr12 1477432 1477685 -142804804 - L1MA5 LINE L1 -2 6298 6037 1523 189 65 92 chr12 1477688 1478132 -142804357 - LTR8A LTR ERV1 -6 721 290 1987 100 0 37 chr12 1478186 1478456 -142804033 + AluSc SINE Alu 1 260 -49 1046 164 72 125 chr12 1478466 1478770 -142803719 - LTR8A LTR ERV1 -439 288 1 3627 149 26 26 chr12 1478770 1479432 -142803057 - L1MA5 LINE L1 -265 6035 5374 1472 199 16 26 chr12 1479454 1479858 -142802631 + MER93b LTR ERV1 17 373 0 1315 288 19 17 chr12 1479862 1480328 -142802161 - L1M4 LINE L1 -3335 2811 2345 222 118 0 0 chr12 1480472 1480506 -142801983 + (TG)n Simple_repeat Simple_repeat 2 35 0 998 8 8 0 chr12 1481244 1481363 -142801126 + (TAGA)n Simple_repeat Simple_repeat 3 122 0 266 222 0 32 chr12 1482333 1482396 -142800093 + MIR SINE MIR 104 164 -98 2219 106 3 7 chr12 1482553 1482855 -142799634 - AluSq SINE Alu -12 301 1 454 287 25 18 chr12 1484119 1484289 -142798200 + MIR SINE MIR 81 250 -12 232 278 153 0 chr12 1485987 1486059 -142796430 - L2 LINE L2 -4 3268 3186 255 284 0 0 chr12 1486159 1486226 -142796263 - L2 LINE L2 -225 3047 2981 1404 220 54 25 chr12 1486326 1486826 -142795663 - MLT1F LTR MaLR 0 542 26 2261 97 0 10 chr12 1486832 1487130 -142795359 - AluSx SINE Alu -17 295 1 247 331 33 33 chr12 1487616 1487737 -142794752 + MIR3 SINE MIR 75 195 -13 1243 171 96 20 chr12 1488351 1488602 -142793887 - AluJo SINE Alu -15 297 28 632 241 59 3 chr12 1488611 1488819 -142793670 - MER58B DNA MER1_type -46 295 14 182 200 308 0 chr12 1488967 1489032 -142793457 - MIR SINE MIR -55 207 123 358 289 10 0 chr12 1489128 1489232 -142793257 - MIR SINE MIR -157 105 1 727 70 0 50 chr12 1490351 1490451 -142792038 + AluJb SINE Alu 210 304 -8 240 111 0 0 chr12 1492606 1492642 -142789847 + (CA)n Simple_repeat Simple_repeat 2 37 0 180 0 0 0 chr12 1494205 1494225 -142788264 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1844 159 3 14 chr12 1495110 1495406 -142787083 + AluJb SINE Alu 1 293 -19 22 0 0 0 chr12 1495406 1495428 -142787061 + AT_rich Low_complexity Low_complexity 1 22 0 598 110 90 0 chr12 1496483 1496583 -142785906 - L1MA4 LINE L1 -29 6271 6163 2603 48 0 6 chr12 1496644 1496956 -142785533 - AluY SINE Alu -1 310 1 656 107 0 39 chr12 1496956 1497049 -142785440 - FLAM_A SINE Alu -178 133 43 612 0 0 0 chr12 1497051 1497119 -142785370 + (TG)n Simple_repeat Simple_repeat 1 68 0 1883 141 11 4 chr12 1497119 1497396 -142785093 - AluSx SINE Alu -33 279 1 2186 111 3 7 chr12 1497514 1497811 -142784678 - AluSx SINE Alu -16 296 1 2172 118 0 0 chr12 1498374 1498678 -142783811 - AluSx SINE Alu -8 304 1 253 281 124 47 chr12 1499168 1499351 -142783138 + L1ME4a LINE L1 5800 6016 -105 2301 81 34 0 chr12 1499351 1499649 -142782840 - AluY SINE Alu -3 308 1 253 281 124 47 chr12 1499649 1499764 -142782725 + L1ME4a LINE L1 6016 6121 0 225 0 0 0 chr12 1500977 1501002 -142781487 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1279 134 125 69 chr12 1501462 1501673 -142780816 - L1MA8 LINE L1 0 6291 6054 2284 107 0 3 chr12 1501673 1501981 -142780508 - AluSx SINE Alu -5 307 1 1279 134 125 69 chr12 1501981 1502089 -142780400 - L1MA8 LINE L1 -237 6054 5954 616 220 8 0 chr12 1502298 1502430 -142780059 - MLT1A1 LTR MaLR 0 365 233 618 139 9 26 chr12 1502453 1502568 -142779921 - MLT1A1 LTR MaLR -252 113 1 1138 136 0 23 chr12 1503317 1503493 -142778996 + FRAM SINE Alu 1 166 -10 1737 173 6 31 chr12 1503688 1504006 -142778483 + AluJb SINE Alu 3 312 0 2023 142 3 3 chr12 1504089 1504400 -142778089 - AluSx SINE Alu -1 311 1 4221 102 38 8 chr12 1505184 1505793 -142776696 + THE1C-int LTR MaLR 954 1580 0 2240 104 122 3 chr12 1505793 1506128 -142776361 + THE1C LTR MaLR 1 375 0 1296 242 116 17 chr12 1506129 1506604 -142775885 - L1MCc LINE L1 -4025 3097 2576 * 4067 173 61 41 chr12 1506600 1507637 -142774852 - L1MB3 LINE L1 0 6183 5128 379 250 62 76 chr12 1507637 1507781 -142774708 - L1MCc LINE L1 -4532 2590 2449 1654 160 6 66 chr12 1507781 1508113 -142774376 + AluJo SINE Alu 1 312 0 379 250 62 76 chr12 1508113 1508192 -142774297 - L1MCc LINE L1 -4673 2449 2370 2186 158 18 23 chr12 1508204 1508589 -142773900 + MLT1B LTR MaLR 2 384 -6 1373 261 38 60 chr12 1508594 1509609 -142772880 - L1MCc LINE L1 -4760 2362 877 3441 209 48 22 chr12 1510302 1511033 -142771456 + MER21B LTR ERV1 1 750 -113 1011 223 67 10 chr12 1511538 1511838 -142770651 - L1MA4 LINE L1 -3 6297 5981 2053 155 33 0 chr12 1513407 1513742 -142768747 + MER7A DNA MER2_type 3 346 0 1178 159 0 0 chr12 1514189 1514371 -142768118 + AluJb SINE Alu 129 310 -2 1725 235 94 61 chr12 1514727 1514981 -142767508 + L1MC4 LINE L1 6450 6694 -1348 2106 85 4 15 chr12 1514981 1515252 -142767237 - AluSp SINE Alu -9 304 37 1725 235 94 61 chr12 1515252 1515558 -142766931 + L1MC4 LINE L1 6694 7029 -1013 1498 210 85 33 chr12 1515863 1515915 -142766574 + L1MC4 LINE L1 7025 7073 -969 258 105 0 0 chr12 1515915 1515953 -142766536 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 1498 210 85 33 chr12 1515953 1516358 -142766131 + L1MC4 LINE L1 7073 7506 -536 258 222 48 0 chr12 1516453 1516516 -142765973 + L1MC4 LINE L1 7921 7986 -56 * 568 226 195 0 chr12 1516502 1516666 -142765823 - L1MC4 LINE L1 -969 7073 6878 24 32 0 0 chr12 1516671 1516702 -142765787 + AT_rich Low_complexity Low_complexity 1 31 0 293 282 204 33 chr12 1516987 1517168 -142765321 + L3 LINE CR1 1334 1545 -32 207 0 0 0 chr12 1517409 1517432 -142765057 + (T)n Simple_repeat Simple_repeat 1 23 0 387 322 51 6 chr12 1517435 1517612 -142764877 + L3b LINE CR1 1296 1480 -103 2235 119 3 0 chr12 1517836 1518146 -142764343 + AluSq SINE Alu 1 311 -2 304 220 154 55 chr12 1518270 1518452 -142764037 + L1ME2 LINE L1 5100 5299 -847 3235 208 94 17 chr12 1518489 1519265 -142763224 + L1ME2 LINE L1 5304 6139 -25 315 0 0 0 chr12 1520148 1520183 -142762306 + (TG)n Simple_repeat Simple_repeat 2 36 0 2305 97 0 10 chr12 1520962 1521270 -142761219 - AluSc SINE Alu -4 305 1 33 25 0 0 chr12 1521353 1521393 -142761096 + AT_rich Low_complexity Low_complexity 1 40 0 2077 165 0 53 chr12 1522528 1522940 -142759549 - MLT1B LTR MaLR 0 390 1 3482 142 2 19 chr12 1523990 1524526 -142757963 - MER1A DNA MER1_type 0 527 1 2176 124 10 0 chr12 1524771 1525070 -142757419 + AluSx SINE Alu 1 302 -10 206 170 0 21 chr12 1525081 1525128 -142757361 + GA-rich Low_complexity Low_complexity 1 46 0 387 242 183 0 chr12 1525200 1525320 -142757169 - MIR3 SINE MIR -12 196 55 798 180 0 0 chr12 1527594 1527716 -142754773 + FLAM_A SINE Alu 1 122 -11 285 291 104 30 chr12 1528384 1528518 -142753971 + MIR3 SINE MIR 64 207 -1 1882 183 0 3 chr12 1528817 1529128 -142753361 + AluJb SINE Alu 1 310 -2 284 155 0 17 chr12 1529128 1529186 -142753303 + GA-rich Low_complexity Low_complexity 1 57 0 242 239 0 0 chr12 1529218 1529264 -142753225 - L2 LINE L2 -3 3310 3265 2410 94 0 10 chr12 1529470 1529777 -142752712 - AluSg SINE Alu -6 304 1 1205 132 0 0 chr12 1529933 1530100 -142752389 + FRAM SINE Alu 1 166 -10 199 328 120 8 chr12 1531748 1531873 -142750616 - L2 LINE L2 0 3272 3134 189 342 58 49 chr12 1532023 1532266 -142750223 - L2 LINE L2 -444 2870 2626 1880 167 0 16 chr12 1532299 1532432 -142750057 + AluJo SINE Alu 1 135 -177 2143 97 31 7 chr12 1532432 1532721 -142749768 + AluY SINE Alu 1 296 -15 1880 167 0 16 chr12 1532721 1532898 -142749591 + AluJo SINE Alu 135 306 -6 21 0 0 0 chr12 1532960 1532981 -142749508 + AT_rich Low_complexity Low_complexity 1 21 0 646 276 131 8 chr12 1533099 1533465 -142749024 + L1ME4a LINE L1 5507 5917 -204 185 356 26 26 chr12 1533479 1533594 -142748895 - L2 LINE L2 -995 2319 2205 365 169 24 48 chr12 1533705 1533788 -142748701 + MIR SINE MIR 181 261 -1 1444 252 122 33 chr12 1534082 1534962 -142747527 - L1ME3A LINE L1 -14 6156 5355 2494 49 14 0 chr12 1534962 1535250 -142747239 + AluY SINE Alu 1 292 -19 1444 252 122 33 chr12 1535250 1535912 -142746577 - L1ME3A LINE L1 -815 5355 4458 234 315 151 20 chr12 1535912 1536058 -142746431 - L2 LINE L2 -1400 1914 1750 24 0 0 0 chr12 1536543 1536567 -142745922 + AT_rich Low_complexity Low_complexity 1 24 0 1101 181 117 37 chr12 1537377 1537676 -142744813 - MER44D DNA MER2_type -8 601 9 305 339 39 47 chr12 1538292 1538525 -142743964 - L3 LINE CR1 -291 1286 1056 2316 99 6 6 chr12 1538884 1539197 -142743292 - AluSq SINE Alu 0 313 1 1489 188 18 70 chr12 1539199 1539465 -142743024 - L1MB8 LINE L1 0 6178 5943 2193 132 0 3 chr12 1539465 1539769 -142742720 + AluJb SINE Alu 1 303 -9 1489 188 18 70 chr12 1539769 1539943 -142742546 - L1MB8 LINE L1 -235 5943 5761 2146 120 0 13 chr12 1540128 1540444 -142742045 - AluSx SINE Alu 0 312 1 2545 54 3 0 chr12 1540474 1540768 -142741721 + AluY SINE Alu 1 295 -16 374 345 58 29 chr12 1540768 1540939 -142741550 - L1MB8 LINE L1 -2081 5727 5552 2302 79 7 23 chr12 1541022 1541327 -142741162 - AluSg SINE Alu -4 306 7 1806 173 0 26 chr12 1541333 1541639 -142740850 - AluJo SINE Alu -14 298 1 2438 105 0 0 chr12 1541648 1541953 -142740536 - AluSg SINE Alu -5 305 1 281 254 18 0 chr12 1541960 1542070 -142740419 - L1MB8 LINE L1 -2400 5408 5297 355 274 53 16 chr12 1542518 1542708 -142739781 - L1MB8 LINE L1 -1365 4781 4585 310 213 106 43 chr12 1542707 1542848 -142739641 + L1ME4a LINE L1 5939 6088 -33 * 2130 106 0 3 chr12 1542862 1543175 -142739314 - AluSx SINE Alu 0 312 1 252 0 0 0 chr12 1543823 1543851 -142738638 + (T)n Simple_repeat Simple_repeat 1 28 0 1629 171 7 50 chr12 1543873 1544171 -142738318 + AluJb SINE Alu 1 285 -27 261 256 0 31 chr12 1544176 1544305 -142738184 + GA-rich Low_complexity Low_complexity 4 128 0 2512 72 0 3 chr12 1544307 1544613 -142737876 + AluY SINE Alu 1 305 -6 731 165 0 9 chr12 1544616 1544731 -142737758 - FLAM_A SINE Alu -19 114 1 572 178 62 75 chr12 1544864 1545010 -142737479 + AluJb SINE Alu 5 148 -164 535 218 137 8 chr12 1545010 1545134 -142737355 - MIR SINE MIR -108 154 15 216 114 29 0 chr12 1545937 1545972 -142736517 + MIR SINE MIR 222 257 -5 229 303 50 42 chr12 1546258 1546377 -142736112 + MIR3 SINE MIR 9 128 -80 309 82 20 0 chr12 1547494 1547543 -142734946 + FLAM SINE Alu 84 133 0 218 227 0 0 chr12 1547846 1547890 -142734599 - L2 LINE L2 -5 3308 3265 2065 101 38 3 chr12 1549711 1549999 -142732490 + AluSx SINE Alu 1 298 -14 270 0 0 0 chr12 1549999 1550029 -142732460 + (TA)n Simple_repeat Simple_repeat 2 31 0 1750 157 3 20 chr12 1553631 1553930 -142728559 + AluJo SINE Alu 1 294 -18 346 270 86 90 chr12 1554112 1554345 -142728144 + L1MC5 LINE L1 7695 7926 -35 576 289 82 14 chr12 1554502 1554710 -142727779 - MIR SINE MIR -28 234 13 1705 157 11 0 chr12 1555260 1555527 -142726962 - AluJo SINE Alu -30 282 13 183 303 83 46 chr12 1555667 1555776 -142726713 - MIR3 SINE MIR -95 113 1 2331 105 0 9 chr12 1557710 1558025 -142724464 - AluSx SINE Alu 0 312 1 242 212 61 61 chr12 1558311 1558410 -142724079 + L2 LINE L2 3138 3236 -36 216 0 0 0 chr12 1559085 1559109 -142723380 + (TG)n Simple_repeat Simple_repeat 2 25 0 1461 101 0 55 chr12 1560368 1560586 -142721903 - AluSp SINE Alu 0 313 108 304 351 18 0 chr12 1562024 1562135 -142720354 + L2 LINE L2 3200 3312 -1 288 289 47 8 chr12 1562136 1562264 -142720225 - MIR3 SINE MIR -75 133 1 2296 195 29 67 chr12 1562320 1562360 -142720129 + L1MB3 LINE L1 5573 5613 -570 2201 110 3 10 chr12 1562360 1562661 -142719828 + AluSp SINE Alu 3 301 -12 2296 195 29 67 chr12 1562661 1563252 -142719237 + L1MB3 LINE L1 5613 6180 -3 555 190 33 109 chr12 1563281 1563492 -142718997 + L1MB4 LINE L1 5986 6180 0 1935 133 61 0 chr12 1563504 1563783 -142718706 + AluSx SINE Alu 1 296 -16 200 176 14 108 chr12 1564268 1564295 -142718194 - L3 LINE CR1 -142 1435 1407 1908 150 38 10 chr12 1564295 1564588 -142717901 - AluJb SINE Alu -11 301 1 200 176 14 108 chr12 1564588 1564634 -142717855 - L3 LINE CR1 -170 1407 1369 * 347 364 50 0 chr12 1564631 1564771 -142717718 - MIR3 SINE MIR -3 205 59 273 401 46 7 chr12 1564930 1565082 -142717407 - L3 LINE CR1 -1186 391 234 2601 43 0 3 chr12 1565106 1565408 -142717081 + AluY SINE Alu 1 301 -10 263 130 0 74 chr12 1565435 1565489 -142717000 - MER58B DNA MER1_type 0 341 292 479 234 161 2 chr12 1565490 1565645 -142716844 + MER45A DNA AcHobo 1 178 0 754 222 159 0 chr12 1565645 1565902 -142716587 - MER58B DNA MER1_type -43 298 1 237 255 0 0 chr12 1567261 1567308 -142715181 - L2 LINE L2 -4 3309 3263 4884 143 29 2 chr12 1567335 1568211 -142714278 - L1MA7 LINE L1 -2 6289 5391 2033 117 0 7 chr12 1568211 1568492 -142713997 + AluSx SINE Alu 34 312 0 2763 180 16 11 chr12 1568496 1569453 -142713036 + L1M2 LINE L1 2472 3432 -3416 1181 102 0 0 chr12 1569461 1569618 -142712871 + AluSp/q SINE Alu 155 311 -2 5673 126 22 4 chr12 1569620 1570367 -142712122 + L1MA4A LINE L1 5315 6084 -219 2488 67 0 16 chr12 1570367 1570680 -142711809 + AluY SINE Alu 1 308 -3 5673 126 22 4 chr12 1570680 1570904 -142711585 + L1MA4A LINE L1 6084 6303 0 237 290 93 19 chr12 1571243 1571350 -142711139 + MIR SINE MIR 117 231 -31 3273 164 18 37 chr12 1571510 1572250 -142710239 - L1MD2 LINE L1 -456 5903 5175 1374 210 26 11 chr12 1572252 1572604 -142709885 - L1MD2 LINE L1 -1007 5139 4783 1838 126 3 99 chr12 1572615 1572949 -142709540 - AluSx SINE Alu -10 302 1 2632 158 55 2 chr12 1573142 1573666 -142708823 - L1MB3 LINE L1 -1 6182 5631 574 264 34 0 chr12 1574313 1574461 -142708028 + MIR SINE MIR 48 200 -62 2047 124 0 50 chr12 1576604 1576927 -142705562 + AluSx SINE Alu 1 307 -5 1011 182 6 0 chr12 1577264 1577434 -142705055 - AluJb SINE Alu -5 307 137 1983 107 66 17 chr12 1577530 1577819 -142704670 - AluSc SINE Alu -5 304 2 1259 169 76 76 chr12 1577928 1578207 -142704282 + MER2 DNA MER2_type 1 282 -62 2093 130 0 46 chr12 1578207 1578345 -142704144 + AluSx SINE Alu 1 144 -168 2065 108 45 3 chr12 1578345 1578633 -142703856 + AluSx SINE Alu 1 300 -12 2093 130 0 46 chr12 1578633 1578817 -142703672 + AluSx SINE Alu 144 308 -4 1259 169 76 76 chr12 1578817 1578881 -142703608 + MER2 DNA MER2_type 281 344 0 2367 82 7 0 chr12 1579131 1579424 -142703065 - AluSp SINE Alu -18 295 1 229 307 118 8 chr12 1580691 1580818 -142701671 - MIR3 SINE MIR -38 170 30 233 267 44 22 chr12 1580869 1580959 -142701530 + L2 LINE L2 3140 3231 -82 831 108 0 58 chr12 1581185 1581324 -142701165 - FLAM_C SINE Alu -2 131 1 349 314 36 67 chr12 1581585 1581639 -142700850 - MIR SINE MIR -3 259 205 1965 148 0 16 chr12 1581639 1581942 -142700547 - AluJb SINE Alu -14 298 1 349 314 36 67 chr12 1581942 1582081 -142700408 - MIR SINE MIR -57 205 72 1938 123 63 26 chr12 1582260 1582611 -142699878 - THE1B LTR MaLR 0 364 1 2167 148 0 0 chr12 1582617 1582921 -142699568 + AluJb SINE Alu 8 311 -1 2519 56 0 3 chr12 1583427 1583729 -142698760 - AluY SINE Alu -10 301 1 245 164 16 33 chr12 1584148 1584209 -142698280 + CT-rich Low_complexity Low_complexity 4 63 0 2094 99 82 0 chr12 1584849 1585131 -142697358 + AluSq SINE Alu 1 305 -8 237 208 26 26 chr12 1586695 1586772 -142695717 + G-rich Low_complexity Low_complexity 4 80 0 31 26 0 0 chr12 1587161 1587199 -142695290 + GC_rich Low_complexity Low_complexity 1 38 0 43 92 0 0 chr12 1587259 1587379 -142695110 + GC_rich Low_complexity Low_complexity 1 120 0 183 100 0 0 chr12 1587433 1587463 -142695026 + (CCG)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr12 1587528 1587563 -142694926 + GC_rich Low_complexity Low_complexity 1 35 0 1960 143 6 37 chr12 1590870 1591192 -142691297 - AluJb SINE Alu 0 312 1 306 299 0 0 chr12 1591196 1591273 -142691216 + MIR3 SINE MIR 125 201 -7 433 281 100 38 chr12 1592427 1592637 -142689852 + MIR SINE MIR 28 250 -12 637 67 79 0 chr12 1592922 1593011 -142689478 + AluS SINE Alu 2 97 -215 1318 182 10 0 chr12 1593017 1593226 -142689263 - AluJo SINE Alu -101 211 1 820 272 313 5 chr12 1593226 1593354 -142689135 + L2 LINE L2 1983 2070 -1244 1847 184 36 0 chr12 1593354 1593690 -142688799 + MER7A DNA MER2_type 1 346 0 820 272 313 5 chr12 1593690 1594219 -142688270 + L2 LINE L2 2070 2843 -471 667 278 46 49 chr12 1594211 1594495 -142687994 + L2 LINE L2 3030 3312 -1 * 1700 166 42 7 chr12 1594553 1594842 -142687647 + AluJo SINE Alu 1 299 -13 1004 204 11 0 chr12 1595436 1595622 -142686867 - MER20 DNA MER1_type -3 216 29 392 320 76 31 chr12 1596079 1596304 -142686185 + MIR SINE MIR 20 254 -8 615 212 97 6 chr12 1596720 1596885 -142685604 + MER104 DNA MER2_type 1 180 0 2475 71 3 0 chr12 1597698 1597995 -142684494 + AluSc SINE Alu 1 298 -11 371 204 150 84 chr12 1598071 1598238 -142684251 + MIR SINE MIR 85 262 0 2294 106 0 16 chr12 1598604 1598907 -142683582 + AluSx SINE Alu 1 298 -14 390 295 8 0 chr12 1599179 1599196 -142683293 - L1MA10 LINE L1 0 6334 6318 1131 221 26 75 chr12 1599196 1599545 -142682944 - L1ME2 LINE L1 -9 6155 5824 1175 161 19 10 chr12 1599546 1599732 -142682757 - AluJo SINE Alu -5 307 117 207 0 0 0 chr12 1599732 1599755 -142682734 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1175 161 19 10 chr12 1599755 1599773 -142682716 - AluJo SINE Alu -195 117 101 1739 186 48 55 chr12 1599776 1600027 -142682462 - L1MC4a LINE L1 -73 7735 7487 1902 95 0 4 chr12 1600027 1600270 -142682219 - AluSx SINE Alu -16 296 55 1739 186 48 55 chr12 1600270 1600476 -142682013 - L1MC4a LINE L1 -321 7487 7281 862 268 124 29 chr12 1600553 1601030 -142681459 - L1MEc LINE L1 -4323 2073 1552 923 145 0 14 chr12 1601045 1601183 -142681306 + AluJb SINE Alu 1 136 -176 2390 87 10 0 chr12 1601183 1601482 -142681007 + AluY SINE Alu 1 302 -9 993 206 10 20 chr12 1601854 1602058 -142680431 + AluJo SINE Alu 100 301 -11 2431 86 0 0 chr12 1602236 1602537 -142679952 - AluY SINE Alu -10 301 1 283 313 50 0 chr12 1604320 1604419 -142678070 + MIR SINE MIR 70 173 -89 872 214 34 15 chr12 1604419 1604625 -142677864 + MER119 DNA MER1_type 356 565 -18 543 330 18 0 chr12 1604625 1604843 -142677646 - HsTC2c DNA Tc2 -6 723 502 2056 115 100 54 chr12 1604843 1605195 -142677294 + MSTA LTR MaLR 1 335 -93 2360 78 10 0 chr12 1605195 1605491 -142676998 + AluY SINE Alu 1 299 -12 180 0 0 0 chr12 1605496 1605516 -142676973 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2056 115 100 54 chr12 1605516 1605566 -142676923 + MSTA LTR MaLR 338 428 0 8830 129 40 42 chr12 1605568 1606052 -142676437 + MSTA-int LTR MaLR 3 486 -1094 2249 129 3 3 chr12 1606052 1606362 -142676127 + AluSx SINE Alu 1 310 -2 8830 129 40 42 chr12 1606362 1607458 -142675031 + MSTA-int LTR MaLR 486 1580 0 1707 119 116 12 chr12 1607460 1607779 -142674710 + MSTA LTR MaLR 3 354 -74 1098 237 93 11 chr12 1607809 1608164 -142674325 - HsTC2c DNA Tc2 -267 462 79 222 246 116 0 chr12 1608691 1608760 -142673729 - L2 LINE L2 -1527 1787 1711 342 246 73 9 chr12 1609594 1609704 -142672785 + MER103 DNA DNA 2 118 -48 181 338 68 38 chr12 1610438 1610571 -142671918 + L2 LINE L2 3136 3272 0 2405 99 0 0 chr12 1611463 1611765 -142670724 - AluSq SINE Alu -11 302 1 880 114 19 25 chr12 1611952 1612110 -142670379 - L1MB3 LINE L1 -1 6182 6026 267 191 79 0 chr12 1612137 1612200 -142670289 - L1MB3 LINE L1 -161 6022 5955 1973 135 3 21 chr12 1612231 1612519 -142669970 - AluJo SINE Alu -21 291 9 650 146 50 70 chr12 1612527 1612646 -142669843 - L1MB4 LINE L1 -214 5966 5879 2534 61 0 0 chr12 1612646 1612939 -142669550 - AluY SINE Alu -18 293 1 650 146 50 70 chr12 1612939 1613053 -142669436 - L1MB4 LINE L1 -301 5879 5764 3990 133 16 6 chr12 1613091 1613782 -142668707 - L1MA7 LINE L1 0 6291 5594 1199 226 80 23 chr12 1613786 1614087 -142668402 - MLT1A1 LTR MaLR -47 318 1 1661 149 91 84 chr12 1614087 1614171 -142668318 - MLT1A1-int LTR MaLR 0 1735 1653 2412 86 10 0 chr12 1614171 1614475 -142668014 - AluSp SINE Alu -6 307 1 2424 82 13 0 chr12 1614475 1614779 -142667710 - AluSp SINE Alu -5 308 1 1661 149 91 84 chr12 1614779 1615109 -142667380 - MLT1A1-int LTR MaLR -81 1654 1317 281 196 333 0 chr12 1615208 1615310 -142667179 + L2 LINE L2 3137 3272 0 2580 52 0 0 chr12 1615426 1615717 -142666772 - AluY SINE Alu -20 291 1 246 32 0 0 chr12 1615926 1615957 -142666532 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 218 286 18 0 chr12 1616370 1616426 -142666063 - L2 LINE L2 -6 3266 3210 1187 193 42 8 chr12 1616515 1616774 -142665715 - MLT1C LTR MaLR 0 467 200 389 184 13 0 chr12 1616830 1616906 -142665583 - MLT1C LTR MaLR -390 77 1 182 254 115 111 chr12 1616942 1616985 -142665504 + L2 LINE L2 3055 3096 -176 2073 142 0 3 chr12 1616985 1617281 -142665208 - AluSg SINE Alu -15 295 1 182 254 115 111 chr12 1617281 1617454 -142665035 + L2 LINE L2 3096 3272 0 267 103 0 0 chr12 1617454 1617493 -142664996 + (TGGA)n Simple_repeat Simple_repeat 2 40 0 478 255 20 33 chr12 1617835 1617988 -142664501 - MER5B DNA MER1_type -26 152 2 427 220 44 0 chr12 1617989 1618080 -142664409 - MIR3 SINE MIR -48 160 66 377 303 16 16 chr12 1618250 1618372 -142664117 + L2 LINE L2 3191 3312 -1 * 473 286 18 75 chr12 1618351 1618493 -142663996 - MIR SINE MIR 0 262 134 2253 98 14 0 chr12 1618493 1618812 -142663677 + AluSx SINE Alu 1 323 0 473 286 18 75 chr12 1618812 1618894 -142663595 - MIR SINE MIR -128 134 49 477 0 0 0 chr12 1619197 1619250 -142663239 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr12 1619899 1619921 -142662568 + AT_rich Low_complexity Low_complexity 1 22 0 850 172 14 0 chr12 1619922 1620067 -142662422 - FRAM SINE Alu -25 151 5 272 325 158 17 chr12 1620824 1620944 -142661545 + MIR SINE MIR 16 152 -56 800 201 6 13 chr12 1620945 1621104 -142661385 + FRAM SINE Alu 1 158 -8 2198 130 0 0 chr12 1621106 1621441 -142661048 + AluSq SINE Alu 1 313 0 266 197 21 14 chr12 1622779 1622861 -142659628 + (TA)n Simple_repeat Simple_repeat 1 82 0 * 6746 163 90 38 chr12 1622857 1623631 -142658858 + L1MCa LINE L1 117 849 -5691 1942 93 3 87 chr12 1623631 1623963 -142658526 + AluSx SINE Alu 1 304 -8 6746 163 90 38 chr12 1623963 1625131 -142657358 + L1MCa LINE L1 849 2262 -4278 1395 74 26 0 chr12 1625131 1625321 -142657168 + AluSg/x SINE Alu 100 294 -16 391 188 0 0 chr12 1625321 1625390 -142657099 + L1MCa LINE L1 2582 2650 -3890 183 184 0 0 chr12 1625730 1625768 -142656721 + CT-rich Low_complexity Low_complexity 1 38 0 2467 53 0 0 chr12 1625845 1626149 -142656340 - AluY SINE Alu -6 305 2 777 256 58 5 chr12 1626573 1626883 -142655606 - LTR16C LTR ERVL 0 491 126 2377 74 3 3 chr12 1627646 1627958 -142654531 - AluSp SINE Alu -1 312 1 293 311 0 0 chr12 1628301 1628375 -142654114 - L2 LINE L2 -6 3307 3234 577 234 38 13 chr12 1628678 1628836 -142653653 - L1MA10 LINE L1 -2 6332 6171 381 305 198 59 chr12 1629093 1629735 -142652754 - L2 LINE L2 -481 2833 2103 * 411 303 135 19 chr12 1629683 1629891 -142652598 + L2 LINE L2 3022 3253 -19 223 306 128 37 chr12 1630061 1630173 -142652316 - L2 LINE L2 -246 3026 2926 2365 85 0 0 chr12 1630173 1630479 -142652010 + AluSp SINE Alu 1 306 -7 223 306 128 37 chr12 1630479 1630678 -142651811 - L2 LINE L2 -346 2926 2686 463 276 17 22 chr12 1630794 1630975 -142651514 + G-rich Low_complexity Low_complexity 1 180 0 22 0 0 0 chr12 1631353 1631375 -142651114 + AT_rich Low_complexity Low_complexity 1 22 0 247 133 22 78 chr12 1631756 1631846 -142650643 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 195 380 0 0 chr12 1633214 1633285 -142649204 + L2 LINE L2 3241 3311 -2 2059 114 7 0 chr12 1634809 1635107 -142647382 + AluSx SINE Alu 1 300 -12 2084 99 14 3 chr12 1635784 1636077 -142646412 + AluSx SINE Alu 1 296 -16 1906 132 7 3 chr12 1638293 1638721 -142643768 + AluSx SINE Alu 1 429 0 32 0 0 0 chr12 1639560 1639592 -142642897 + AT_rich Low_complexity Low_complexity 1 32 0 1697 124 4 26 chr12 1640534 1640807 -142641682 + AluJo SINE Alu 22 288 -24 2460 50 0 0 chr12 1641567 1641864 -142640625 + AluY SINE Alu 1 297 -14 823 132 0 0 chr12 1642705 1642826 -142639663 + FRAM SINE Alu 43 163 -13 685 182 25 0 chr12 1642832 1642953 -142639536 - FLAM_A SINE Alu -9 124 1 2357 62 3 19 chr12 1643406 1643715 -142638774 + AluSp SINE Alu 1 304 -9 1928 127 3 35 chr12 1645556 1645870 -142636619 + AluJb SINE Alu 1 304 -8 234 156 0 0 chr12 1645909 1645954 -142636535 + GA-rich Low_complexity Low_complexity 4 48 0 384 248 199 28 chr12 1645968 1646109 -142636380 + MIR SINE MIR 46 210 -52 307 41 41 0 chr12 1648632 1648681 -142633808 + (TA)n Simple_repeat Simple_repeat 2 52 0 243 0 0 0 chr12 1650607 1650634 -142631855 + (CCG)n Simple_repeat Simple_repeat 2 28 0 201 288 25 25 chr12 1650647 1650765 -142631724 + C-rich Low_complexity Low_complexity 6 123 0 285 221 35 9 chr12 1650819 1650932 -142631557 + (CCG)n Simple_repeat Simple_repeat 3 118 0 39 50 0 0 chr12 1650933 1650993 -142631496 + GC_rich Low_complexity Low_complexity 1 60 0 25 95 0 0 chr12 1651240 1651314 -142631175 + GC_rich Low_complexity Low_complexity 1 74 0 310 276 23 11 chr12 1653335 1653422 -142629067 + MIR3 SINE MIR 106 193 -15 459 0 0 0 chr12 1653963 1654014 -142628475 + (TA)n Simple_repeat Simple_repeat 2 52 0 1969 113 0 17 chr12 1654071 1654372 -142628117 + AluSx SINE Alu 1 296 -16 199 253 88 66 chr12 1654384 1654475 -142628014 + L2 LINE L2 3180 3272 0 1504 171 23 7 chr12 1654725 1655012 -142627477 + L1MB2 LINE L1 5280 5558 -625 856 132 0 23 chr12 1655013 1655142 -142627347 + FLAM_C SINE Alu 1 126 -17 3348 158 14 11 chr12 1655143 1655706 -142626783 + L1MB2 LINE L1 5557 6121 -50 1080 66 7 0 chr12 1655706 1655842 -142626647 + AluSp SINE Alu 1 137 -176 2217 104 3 0 chr12 1655843 1656151 -142626338 + AluSp SINE Alu 4 312 -1 255 130 65 0 chr12 1656151 1656197 -142626292 + L1MB2 LINE L1 6121 6169 -2 226 275 0 62 chr12 1656430 1656510 -142625979 + MER94 DNA DNA 2 76 -58 1533 149 30 37 chr12 1656821 1657116 -142625373 + AluJo SINE Alu 1 293 -19 1701 144 0 14 chr12 1657564 1657841 -142624648 + AluJb SINE Alu 1 273 -39 530 233 83 79 chr12 1658157 1658385 -142624104 + MIR SINE MIR 34 262 0 2163 92 3 3 chr12 1658528 1658823 -142623666 + AluSg SINE Alu 1 295 -15 2154 105 0 0 chr12 1659047 1659341 -142623148 - AluSx SINE Alu -18 294 1 269 234 0 4 chr12 1659371 1659465 -142623024 - MER5A DNA MER1_type -2 187 57 575 327 31 13 chr12 1659705 1659931 -142622558 + MIR SINE MIR 7 236 -26 738 288 60 44 chr12 1659938 1660188 -142622301 - MIR SINE MIR -8 254 1 2171 150 35 8 chr12 1660263 1660348 -142622141 + L1MA5 LINE L1 5889 5970 -330 1778 134 3 3 chr12 1660348 1660631 -142621858 + AluJo SINE Alu 6 288 -24 2171 150 35 8 chr12 1660631 1660946 -142621543 + L1MA5 LINE L1 5970 6300 0 408 175 12 6 chr12 1661232 1661398 -142621091 + (TG)n Simple_repeat Simple_repeat 1 167 0 193 143 20 31 chr12 1661421 1661519 -142620970 + (TG)n Simple_repeat Simple_repeat 1 97 0 419 191 6 0 chr12 1661548 1661710 -142620779 + (TG)n Simple_repeat Simple_repeat 1 163 0 2132 95 3 0 chr12 1663087 1663372 -142619117 + AluSx SINE Alu 1 286 -26 234 81 0 0 chr12 1663374 1663411 -142619078 + (CTAA)n Simple_repeat Simple_repeat 3 39 0 2182 111 10 0 chr12 1663487 1663794 -142618695 + AluSg SINE Alu 1 310 0 2171 82 0 30 chr12 1664123 1664426 -142618063 - AluSx SINE Alu -18 294 1 1694 124 16 60 chr12 1665538 1665853 -142616636 - AluJb SINE Alu -11 301 1 1817 162 0 0 chr12 1666013 1666355 -142616134 - AluJo SINE Alu 0 312 1 454 171 36 45 chr12 1666451 1666562 -142615927 + L1ME3 LINE L1 6052 6161 -1 22 0 0 0 chr12 1666563 1666585 -142615904 + AT_rich Low_complexity Low_complexity 1 22 0 783 171 0 0 chr12 1666970 1667087 -142615402 + FLAM_C SINE Alu 1 117 -16 25 31 0 0 chr12 1667087 1667119 -142615370 + AT_rich Low_complexity Low_complexity 1 32 0 2437 69 0 0 chr12 1667540 1667844 -142614645 - AluY SINE Alu -7 304 1 343 284 90 45 chr12 1669038 1669172 -142613317 + L1ME LINE L1 5353 5492 -629 428 303 39 3 chr12 1669338 1669479 -142613010 - MIR3 SINE MIR -5 203 57 1788 139 7 3 chr12 1669700 1669987 -142612502 - AluJo SINE Alu -24 288 1 863 291 54 31 chr12 1670153 1670541 -142611948 - MLT1J2 LTR MaLR 0 450 54 214 293 48 85 chr12 1671181 1671369 -142611120 + L2 LINE L2 2613 2793 -521 257 109 22 0 chr12 1671440 1671486 -142611003 + CT-rich Low_complexity Low_complexity 2 48 0 996 159 63 11 chr12 1672280 1672469 -142610020 + MER3 DNA MER1_type 8 206 -3 231 311 14 14 chr12 1672570 1672644 -142609845 - MIR SINE MIR -3 259 186 26 0 0 0 chr12 1673752 1673778 -142608711 + AT_rich Low_complexity Low_complexity 1 26 0 1919 149 20 7 chr12 1673815 1674110 -142608379 + AluJb SINE Alu 13 311 -1 1907 146 7 10 chr12 1674307 1674602 -142607887 + AluJo SINE Alu 1 294 -18 879 258 47 86 chr12 1676493 1676981 -142605508 - L1ME3A LINE L1 0 6170 5702 1192 137 0 6 chr12 1676981 1677156 -142605333 - AluSc SINE Alu -4 305 132 2351 82 3 0 chr12 1677156 1677447 -142605042 - AluSc SINE Alu -13 296 5 252 403 26 0 chr12 1677587 1677741 -142604748 - L2 LINE L2 -740 2574 2417 1689 164 60 11 chr12 1678014 1678295 -142604194 - AluJo SINE Alu -17 295 1 1733 31 0 0 chr12 1678555 1678748 -142603741 - AluY SINE Alu -6 305 113 276 331 126 38 chr12 1679121 1679384 -142603105 - L2 LINE L2 -1 3312 3027 219 309 22 116 chr12 1679529 1679635 -142602854 - L2 LINE L2 -474 2840 2756 2637 61 0 0 chr12 1679635 1679945 -142602544 - AluY SINE Alu -1 310 1 219 309 22 116 chr12 1679945 1680019 -142602470 - L2 LINE L2 -558 2756 2677 2256 96 33 0 chr12 1680555 1680858 -142601631 + AluSq SINE Alu 1 313 0 469 279 137 5 chr12 1680920 1681110 -142601379 + MIR SINE MIR 48 262 0 2290 125 3 0 chr12 1682102 1682413 -142600076 - AluSx SINE Alu 0 312 1 1891 151 68 0 chr12 1682417 1682709 -142599780 - AluJo SINE Alu 0 312 1 2382 95 3 0 chr12 1682718 1683013 -142599476 - AluSp SINE Alu -17 296 1 2450 68 0 3 chr12 1683020 1683315 -142599174 - AluY SINE Alu -17 294 1 245 345 117 34 chr12 1683384 1683648 -142598841 - L2 LINE L2 -1 3312 3027 340 225 0 56 chr12 1684366 1684455 -142598034 + L2 LINE L2 3230 3313 0 1846 125 4 8 chr12 1684611 1684875 -142597614 - AluSx SINE Alu -16 296 34 218 192 19 0 chr12 1685360 1685412 -142597077 + (TG)n Simple_repeat Simple_repeat 1 53 0 21 36 0 0 chr12 1685492 1685520 -142596969 + AT_rich Low_complexity Low_complexity 1 28 0 204 184 41 20 chr12 1688990 1689039 -142593450 + L2 LINE L2 3221 3270 -2 895 108 0 8 chr12 1690382 1690502 -142591987 + FLAM_C SINE Alu 9 127 -16 604 313 102 16 chr12 1691765 1692011 -142590478 + L3 LINE CR1 1160 1426 -151 2510 157 50 18 chr12 1692613 1692948 -142589541 - L1MB7 LINE L1 -8 6176 5854 396 0 0 0 chr12 1692948 1692992 -142589497 + (TA)n Simple_repeat Simple_repeat 1 44 0 1796 161 10 30 chr12 1692993 1693153 -142589336 - AluJo SINE Alu -14 298 136 279 0 0 0 chr12 1693153 1693184 -142589305 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 2109 106 29 0 chr12 1693184 1693458 -142589031 - AluSq SINE Alu -31 282 1 1796 161 10 30 chr12 1693458 1693600 -142588889 - AluJo SINE Alu -174 138 1 2510 157 50 18 chr12 1693600 1693777 -142588712 - L1MB7 LINE L1 -329 5855 5645 840 115 56 133 chr12 1693778 1693906 -142588583 - Tigger1 DNA MER2_type -1 2417 2313 2262 84 0 45 chr12 1693906 1694214 -142588275 + AluSg SINE Alu 1 294 -16 840 115 56 133 chr12 1694214 1694319 -142588170 - Tigger1 DNA MER2_type -105 2313 2202 740 151 24 78 chr12 1694308 1694417 -142588072 - Tigger1 DNA MER2_type -2261 157 57 * 2176 96 7 0 chr12 1694417 1694727 -142587762 + AluY SINE Alu 1 312 0 740 151 24 78 chr12 1694727 1694782 -142587707 - Tigger1 DNA MER2_type -2361 57 1 944 191 87 48 chr12 1694786 1695016 -142587473 - L1MB7 LINE L1 -542 5642 5404 2502 55 3 3 chr12 1695578 1695887 -142586602 - AluY SINE Alu -2 309 1 310 321 36 0 chr12 1695887 1695999 -142586490 + L3 LINE CR1 1282 1397 -180 188 0 74 0 chr12 1696628 1696655 -142585834 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2392 94 0 3 chr12 1697553 1697852 -142584637 + AluSx SINE Alu 1 298 -14 2246 101 26 13 chr12 1697971 1698279 -142584210 + AluSx SINE Alu 1 312 0 2469 67 3 7 chr12 1699816 1700115 -142582374 - AluSp SINE Alu -14 299 2 180 77 0 0 chr12 1700137 1700163 -142582326 + (T)n Simple_repeat Simple_repeat 1 26 0 209 169 17 0 chr12 1700220 1700279 -142582210 + (TA)n Simple_repeat Simple_repeat 1 60 0 259 225 42 14 chr12 1700838 1700909 -142581580 + MIR SINE MIR 81 153 -109 192 77 0 0 chr12 1701678 1701704 -142580785 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 979 173 0 0 chr12 1701707 1701863 -142580626 - AluJo SINE Alu -30 282 127 23 54 0 0 chr12 1702751 1702788 -142579701 + AT_rich Low_complexity Low_complexity 1 37 0 2169 136 3 0 chr12 1704551 1704846 -142577643 + AluSx SINE Alu 1 296 -16 211 344 21 11 chr12 1705447 1705540 -142576949 - MIR3 SINE MIR -7 201 108 335 271 164 8 chr12 1705547 1705669 -142576820 - MER5A DNA MER1_type -35 154 14 393 70 0 0 chr12 1706553 1706610 -142575879 + (TG)n Simple_repeat Simple_repeat 2 58 0 183 80 0 0 chr12 1707362 1707387 -142575102 + (GA)n Simple_repeat Simple_repeat 2 26 0 470 255 26 39 chr12 1707669 1707822 -142574667 + L2 LINE L2 3163 3313 0 342 0 0 0 chr12 1708054 1708092 -142574397 + (TC)n Simple_repeat Simple_repeat 1 38 0 2416 75 0 19 chr12 1708850 1709168 -142573321 + AluSq SINE Alu 1 312 -1 21 36 0 0 chr12 1709510 1709538 -142572951 + AT_rich Low_complexity Low_complexity 1 28 0 2015 103 3 59 chr12 1709538 1709858 -142572631 + AluSx SINE Alu 1 302 -10 501 271 112 0 chr12 1710119 1710289 -142572200 - MIR SINE MIR 0 262 74 1749 157 13 41 chr12 1710508 1710653 -142571836 + AluJo SINE Alu 1 149 -163 1867 152 7 24 chr12 1710653 1710949 -142571540 + AluJo SINE Alu 1 291 -21 1749 157 13 41 chr12 1710949 1711121 -142571368 + AluJo SINE Alu 149 309 -3 727 211 0 0 chr12 1712251 1712379 -142570110 + FLAM_C SINE Alu 2 129 -14 299 257 9 55 chr12 1712382 1712491 -142569998 - MER5B DNA MER1_type -58 120 17 677 166 72 122 chr12 1712677 1712825 -142569664 + FAM SINE Alu 4 143 -168 2033 109 46 7 chr12 1712825 1713108 -142569381 - AluSg SINE Alu -16 294 1 677 166 72 122 chr12 1713108 1713140 -142569349 + FAM SINE Alu 143 175 0 1554 209 7 7 chr12 1713788 1714090 -142568399 - AluJo SINE Alu -10 302 1 901 156 0 7 chr12 1714091 1714232 -142568257 - FLAM_C SINE Alu -1 142 3 2370 106 3 0 chr12 1714645 1714956 -142567533 - AluSx SINE Alu 0 312 1 1018 172 0 0 chr12 1715353 1715510 -142566979 + FRAM SINE Alu 1 157 -19 2409 88 0 13 chr12 1715883 1716189 -142566300 - AluSx SINE Alu -10 302 1 514 255 127 0 chr12 1717123 1717280 -142565209 - MER69A DNA AcHobo 0 177 1 180 188 24 12 chr12 1718294 1718379 -142564110 + (CGGGG)n Simple_repeat Simple_repeat 5 90 0 403 98 0 109 chr12 1718761 1718944 -142563545 + (CCCCCT)n Simple_repeat Simple_repeat 5 167 0 417 97 0 113 chr12 1721456 1721651 -142560838 + (CCCCCT)n Simple_repeat Simple_repeat 5 177 0 294 241 0 25 chr12 1721654 1721733 -142560756 + C-rich Low_complexity Low_complexity 5 81 0 243 339 16 31 chr12 1722508 1722635 -142559854 + L2 LINE L2 3188 3312 -1 862 171 13 4 chr12 1722635 1722869 -142559620 + GA-rich Low_complexity Low_complexity 1 236 0 2233 120 3 0 chr12 1723240 1723549 -142558940 + AluSg SINE Alu 1 310 0 2162 142 0 0 chr12 1723566 1723875 -142558614 + AluJb SINE Alu 1 309 -3 408 231 112 28 chr12 1723913 1724056 -142558433 - L1MC4 LINE L1 -1393 6649 6495 863 262 86 92 chr12 1724482 1724692 -142557797 + L1MB3 LINE L1 5131 5341 -780 2407 80 3 3 chr12 1724692 1724992 -142557497 - AluSp SINE Alu -13 300 1 863 262 86 92 chr12 1724992 1725432 -142557057 + L1MB3 LINE L1 5341 5785 -336 478 134 56 14 chr12 1726070 1726212 -142556277 + (CAGAGA)n Simple_repeat Simple_repeat 3 150 0 1749 160 0 17 chr12 1726362 1726662 -142555827 + AluJb SINE Alu 1 295 -17 1498 169 31 79 chr12 1726821 1727132 -142555357 + L1MB3 LINE L1 5817 6120 -63 1399 161 13 95 chr12 1727132 1727448 -142555041 - AluJo SINE Alu -22 290 1 1498 169 31 79 chr12 1727448 1727510 -142554979 + L1MB3 LINE L1 6120 6183 0 2139 116 7 7 chr12 1728668 1728970 -142553519 - AluSg SINE Alu -8 302 1 391 294 8 8 chr12 1730482 1730608 -142551881 + L1MC5 LINE L1 7721 7846 -115 1854 166 3 0 chr12 1730624 1730925 -142551564 + AluJb SINE Alu 1 302 -10 2556 60 0 0 chr12 1730970 1731272 -142551217 + AluY SINE Alu 1 302 -9 2345 94 0 0 chr12 1731468 1731766 -142550723 - AluSx SINE Alu -14 298 1 439 264 0 9 chr12 1731769 1731879 -142550610 + MIR3 SINE MIR 81 189 -19 2423 92 0 0 chr12 1731962 1732266 -142550223 - AluSx SINE Alu -8 304 1 3399 178 46 24 chr12 1732266 1732400 -142550089 - L1M4 LINE L1 -725 5453 5323 2005 125 7 0 chr12 1732400 1732705 -142549784 - AluSg SINE Alu 0 307 1 3399 178 46 24 chr12 1732705 1733394 -142549095 - L1M4 LINE L1 -855 5323 4613 495 233 67 0 chr12 1733433 1733553 -142548936 + L2 LINE L2 3183 3310 -3 2220 103 3 0 chr12 1733662 1733954 -142548535 - AluSx SINE Alu -17 295 3 1690 129 4 16 chr12 1734001 1734257 -142548232 + AluSx SINE Alu 44 296 -16 2228 103 7 10 chr12 1734259 1734569 -142547920 + AluY SINE Alu 1 309 -2 481 226 147 49 chr12 1734598 1734802 -142547687 - L1ME LINE L1 -416 5729 5506 581 241 133 95 chr12 1734938 1735395 -142547094 - L1MEd LINE L1 -4730 1580 1026 2268 102 3 0 chr12 1735395 1735689 -142546800 - AluSx SINE Alu -17 295 1 581 241 133 95 chr12 1735689 1735894 -142546595 - L1MEd LINE L1 -5284 1026 830 303 273 0 26 chr12 1735959 1736036 -142546453 - L1MEd LINE L1 -5603 516 442 382 253 26 89 chr12 1736063 1736157 -142546332 - L1MEd LINE L1 -5918 201 103 1533 185 52 11 chr12 1736157 1736443 -142546046 - AluJo SINE Alu -14 298 1 2244 99 0 0 chr12 1736447 1736741 -142545748 - AluSg SINE Alu -16 294 1 382 253 26 89 chr12 1736741 1736831 -142545658 - L1MEd LINE L1 -6019 100 24 462 85 0 0 chr12 1736973 1737032 -142545457 + Alu SINE Alu 234 292 -18 312 278 196 21 chr12 1737223 1737417 -142545072 - L2 LINE L2 -494 2820 2593 2342 99 0 0 chr12 1737939 1738242 -142544247 - AluSg SINE Alu -7 303 1 201 131 66 16 chr12 1738569 1738630 -142543859 + (TTATA)n Simple_repeat Simple_repeat 4 67 0 293 273 0 13 chr12 1738711 1738788 -142543701 - L2 LINE L2 -1 3271 3196 2274 94 3 0 chr12 1738864 1739152 -142543337 + AluSx SINE Alu 1 289 -23 1656 165 14 30 chr12 1739254 1739551 -142542938 - AluJo SINE Alu -20 292 1 1156 247 8 8 chr12 1739836 1740087 -142542402 + MIR SINE MIR 12 262 0 675 198 0 95 chr12 1741133 1741239 -142541250 - MER45A DNA AcHobo -1413 168 85 2210 117 0 3 chr12 1741239 1741547 -142540942 + AluSq SINE Alu 1 307 -6 675 198 0 95 chr12 1741547 1741625 -142540864 - MER45A DNA AcHobo -1496 85 1 215 294 110 18 chr12 1741649 1741725 -142540764 - MER5B DNA MER1_type -26 152 62 1913 125 69 0 chr12 1741725 1742014 -142540475 - AluJo SINE Alu -3 309 1 215 294 110 18 chr12 1742014 1742046 -142540443 - MER5B DNA MER1_type -116 62 34 1994 124 7 3 chr12 1742114 1742422 -142540067 - AluY SINE Alu 0 309 1 1931 141 0 20 chr12 1742424 1742723 -142539766 - AluJo SINE Alu -19 293 1 1681 149 67 0 chr12 1742728 1743017 -142539472 - AluSx SINE Alu 0 307 1 3531 198 61 35 chr12 1744085 1744117 -142538372 + L1ME2 LINE L1 5254 5284 -880 2186 138 0 0 chr12 1744117 1744422 -142538067 + AluSx SINE Alu 1 305 -7 3531 198 61 35 chr12 1744422 1744859 -142537630 + L1ME2 LINE L1 5284 5708 -456 1822 183 0 0 chr12 1744859 1745165 -142537324 + AluJo SINE Alu 5 310 -2 3531 198 61 35 chr12 1745165 1745573 -142536916 + L1ME2 LINE L1 5708 6155 -9 2598 51 0 3 chr12 1746049 1746360 -142536129 - AluY SINE Alu -1 310 1 867 158 47 0 chr12 1746989 1747116 -142535373 + FLAM_C SINE Alu 1 133 0 1151 126 6 0 chr12 1747171 1747330 -142535159 - FRAM SINE Alu -2 164 5 2295 100 3 3 chr12 1748143 1748443 -142534046 - AluSx SINE Alu -12 300 1 202 224 30 15 chr12 1749969 1750036 -142532453 + (CGG)n Simple_repeat Simple_repeat 1 68 0 186 43 0 0 chr12 1750055 1750078 -142532411 + (CGG)n Simple_repeat Simple_repeat 3 25 0 218 244 0 0 chr12 1750092 1750133 -142532356 + C-rich Low_complexity Low_complexity 1 41 0 1008 209 0 71 chr12 1751771 1751846 -142530643 + MER58A DNA MER1_type 1 80 -2340 2214 125 0 0 chr12 1751846 1752150 -142530339 + AluSq SINE Alu 1 304 -9 1008 209 0 71 chr12 1752150 1752313 -142530176 + MER58A DNA MER1_type 80 222 -2 2272 87 19 16 chr12 1752494 1752806 -142529683 - AluSq SINE Alu 0 313 1 848 272 37 16 chr12 1752993 1753236 -142529253 - MIR SINE MIR -10 252 5 1882 164 52 12 chr12 1753294 1753623 -142528866 + MER2 DNA MER2_type 3 344 0 891 189 90 0 chr12 1753772 1753984 -142528505 - L1MC2 LINE L1 -3 6341 6111 865 191 42 0 chr12 1753985 1754153 -142528336 - AluJb SINE Alu -1 311 137 770 183 34 57 chr12 1754167 1754342 -142528147 + AluJo SINE Alu 126 296 -16 2134 113 0 29 chr12 1754345 1754655 -142527834 + AluSq SINE Alu 1 301 -12 201 171 0 0 chr12 1754807 1754842 -142527647 + T-rich Low_complexity Low_complexity 1 35 0 1727 194 0 6 chr12 1755356 1755670 -142526819 - AluJo SINE Alu 0 312 1 297 0 0 0 chr12 1757180 1757213 -142525276 + (TG)n Simple_repeat Simple_repeat 2 34 0 1583 170 57 11 chr12 1757214 1757496 -142524993 - AluJb SINE Alu -17 295 1 327 291 36 9 chr12 1757730 1757840 -142524649 - L1ME LINE L1 -513 5608 5496 205 277 191 32 chr12 1758087 1758181 -142524308 + L2 LINE L2 3146 3254 -18 2058 104 10 7 chr12 1758310 1758439 -142524050 + AluSp SINE Alu 2 129 -184 202 0 29 57 chr12 1758439 1758474 -142524015 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2058 104 10 7 chr12 1758474 1758641 -142523848 + AluSp SINE Alu 129 299 -14 1615 180 31 3 chr12 1760101 1760395 -142522094 - AluJb SINE Alu -10 302 1 392 189 14 0 chr12 1760536 1760610 -142521879 + MER116 DNA Mariner 6 80 0 372 181 32 76 chr12 1760617 1760787 -142521702 - L1ME LINE L1 -301 5820 5658 2223 120 3 0 chr12 1760813 1761121 -142521368 + AluSx SINE Alu 1 309 -3 315 207 413 0 chr12 1761126 1761247 -142521242 - MER112 DNA MER1_type -23 237 67 345 288 89 57 chr12 1761271 1761587 -142520902 - L1ME LINE L1 -2155 5653 5328 307 266 213 12 chr12 1761627 1761796 -142520693 - L1ME LINE L1 -858 5288 5086 523 228 29 29 chr12 1761798 1761934 -142520555 + LTR49 LTR ERV1 459 594 -1 349 278 130 60 chr12 1762029 1762382 -142520107 + L1ME4a LINE L1 5679 6056 -65 1464 171 80 8 chr12 1762427 1762720 -142519769 + AluJb SINE Alu 1 312 0 1015 208 20 15 chr12 1762780 1762982 -142519507 - AluJo SINE Alu -105 207 5 208 241 0 0 chr12 1762989 1763047 -142519442 + T-rich Low_complexity Low_complexity 1 58 0 226 224 35 0 chr12 1763047 1763105 -142519384 - L1ME LINE L1 -1162 4984 4925 346 172 0 16 chr12 1764325 1764343 -142518146 - MER46A DNA MER2_type -75 161 145 1636 127 156 0 chr12 1764343 1764626 -142517863 + MER46B DNA MER2_type 1 202 -34 507 261 112 12 chr12 1764806 1764967 -142517522 + MIR SINE MIR 5 181 -81 291 335 89 0 chr12 1765129 1765287 -142517202 + MIR SINE MIR 65 236 -26 2562 244 113 48 chr12 1765573 1765818 -142516671 - L1ME1 LINE L1 -5 6161 5933 842 208 13 0 chr12 1765818 1765972 -142516517 + FRAM SINE Alu 1 156 -10 2562 244 113 48 chr12 1765972 1766435 -142516054 - L1ME1 LINE L1 -233 5933 5501 1462 177 39 45 chr12 1766435 1766746 -142515743 - AluJb SINE Alu -3 309 1 2562 244 113 48 chr12 1766746 1766942 -142515547 - L1ME1 LINE L1 -665 5501 5319 1048 185 106 97 chr12 1766942 1767283 -142515206 - MER2 DNA MER2_type 0 344 1 2562 244 113 48 chr12 1767283 1767697 -142514792 - L1ME1 LINE L1 -847 5319 4933 2306 98 3 0 chr12 1767697 1767992 -142514497 - AluSx SINE Alu -16 296 1 2562 244 113 48 chr12 1767992 1768398 -142514091 - L1ME1 LINE L1 -1233 4933 4319 31 26 0 0 chr12 1768699 1768737 -142513752 + AT_rich Low_complexity Low_complexity 1 38 0 1248 112 122 5 chr12 1769013 1769210 -142513279 + LTR12 LTR ERV1 66 285 -429 312 244 11 0 chr12 1769211 1769301 -142513188 + LTR30 LTR ERV1 553 643 -79 801 107 1 15 chr12 1769301 1769427 -142513062 + LTR12 LTR ERV1 301 584 -130 * 2162 120 3 6 chr12 1769422 1769746 -142512743 + HERV9 LTR ERV1 73 395 -8004 * 5703 102 1 1 chr12 1769726 1770507 -142511982 - HERV9 LTR ERV1 -116 8283 7503 829 129 188 8 chr12 1770505 1770761 -142511728 - HERV9 LTR ERV1 -5755 1141 840 * 26667 91 16 22 chr12 1770748 1774472 -142508017 - HERV9 LTR ERV1 -3447 4952 1252 281 114 0 23 chr12 1774489 1774533 -142507956 - HERV9 LTR ERV1 -2789 5610 5568 * 1000 145 6 12 chr12 1774513 1774670 -142507819 + pTR5 LTR ERV1 587 742 -1696 1715 103 96 4 chr12 1774670 1774931 -142507558 + LTR12 LTR ERV1 1 285 -429 295 264 11 0 chr12 1774931 1775022 -142507467 + LTR30 LTR ERV1 552 643 -79 731 118 2 2 chr12 1775022 1775139 -142507350 + LTR12 LTR ERV1 170 582 -132 2259 105 7 0 chr12 1776400 1776695 -142505794 + AluSp SINE Alu 3 299 -14 278 304 0 33 chr12 1776805 1776897 -142505592 + L2 LINE L2 3219 3307 -6 336 208 0 0 chr12 1777504 1777576 -142504913 - L1ME1 LINE L1 -5 6161 6090 681 296 69 9 chr12 1778376 1778609 -142503880 + MIR SINE MIR 10 256 -6 2005 134 10 13 chr12 1778637 1778950 -142503539 - AluSx SINE Alu 0 312 1 247 290 75 56 chr12 1778960 1779067 -142503422 - L2 LINE L2 -42 3230 3122 309 236 14 42 chr12 1779203 1779275 -142503214 - L2 LINE L2 -1 3312 3243 2964 104 76 17 chr12 1779276 1779747 -142502742 - MER1A DNA MER1_type -30 499 1 489 174 10 10 chr12 1779759 1779857 -142502632 + MER4A LTR ERV1 1 98 -566 1359 129 182 116 chr12 1779857 1780179 -142502310 + MER4A LTR ERV1 261 613 -51 2377 100 7 0 chr12 1780179 1780489 -142502000 - AluSx SINE Alu 0 312 1 1359 129 182 116 chr12 1780489 1780545 -142501944 + MER4A LTR ERV1 613 664 0 1706 252 137 24 chr12 1780546 1781447 -142501042 - L2 LINE L2 -74 3239 2230 335 214 84 104 chr12 1781476 1781630 -142500859 - L2 LINE L2 -1417 1897 1747 1738 123 27 61 chr12 1782321 1782647 -142499842 + AluSx SINE Alu 1 316 0 239 122 0 0 chr12 1782677 1782718 -142499771 + L1MC/D LINE L1 5879 5919 -440 2836 154 35 53 chr12 1782720 1782958 -142499531 + L1MB3 LINE L1 5561 5802 -381 2237 98 0 3 chr12 1782958 1783254 -142499235 - AluSg SINE Alu -15 295 1 2836 154 35 53 chr12 1783254 1783637 -142498852 + L1MB3 LINE L1 5802 6171 -12 1205 144 0 0 chr12 1783656 1783836 -142498653 - AluJb SINE Alu -4 308 129 187 289 0 0 chr12 1783873 1783918 -142498571 - L2 LINE L2 0 3272 3228 2183 104 20 7 chr12 1784095 1784393 -142498096 - AluSq SINE Alu -11 302 1 303 284 25 0 chr12 1784595 1784676 -142497813 - L2 LINE L2 -6 3307 3225 483 237 105 0 chr12 1784869 1784983 -142497506 - L2 LINE L2 0 3313 3188 2152 122 0 0 chr12 1785175 1785471 -142497018 - AluSq SINE Alu -17 296 1 223 321 0 18 chr12 1785535 1785591 -142496898 + MIR SINE MIR 34 88 -120 * 276 310 118 68 chr12 1785553 1785995 -142496494 + L2 LINE L2 2088 2551 -763 305 325 87 16 chr12 1786036 1786162 -142496327 + L2 LINE L2 2937 3071 -201 28 29 0 0 chr12 1786437 1786472 -142496017 + AT_rich Low_complexity Low_complexity 1 35 0 2174 102 14 3 chr12 1787089 1787383 -142495106 - AluSq SINE Alu -16 297 1 2360 96 0 3 chr12 1787415 1787728 -142494761 + AluSx SINE Alu 1 312 0 207 0 0 0 chr12 1787933 1787956 -142494533 + (T)n Simple_repeat Simple_repeat 1 23 0 22 70 0 0 chr12 1788300 1788343 -142494146 + AT_rich Low_complexity Low_complexity 1 43 0 29 28 0 0 chr12 1788418 1788454 -142494035 + AT_rich Low_complexity Low_complexity 1 36 0 855 173 0 0 chr12 1788454 1788587 -142493902 - FLAM_C SINE Alu 0 133 1 216 0 0 0 chr12 1788592 1788616 -142493873 + (T)n Simple_repeat Simple_repeat 1 24 0 2517 70 0 0 chr12 1789310 1789612 -142492877 + AluY SINE Alu 1 302 -9 1325 165 150 0 chr12 1790038 1790298 -142492191 - AluJo SINE Alu -13 299 1 1660 173 67 6 chr12 1790306 1790652 -142491837 - L1MB4 LINE L1 0 6180 5814 2134 120 0 13 chr12 1790652 1790961 -142491528 + AluSx SINE Alu 1 305 -7 3450 136 60 12 chr12 1790991 1791646 -142490843 - L1MC2 LINE L1 -15 6329 5644 20660 30 9 7 chr12 1792585 1795898 -142486591 - L1PA4 LINE L1 -3 6152 2838 309 288 116 14 chr12 1795976 1796122 -142486367 + MIR SINE MIR 37 197 -65 1586 121 128 12 chr12 1796568 1796825 -142485664 - AluSg SINE Alu -23 287 1 1753 174 3 33 chr12 1797065 1797364 -142485125 + AluJb SINE Alu 1 290 -22 1169 203 81 31 chr12 1798382 1798703 -142483786 + MER58B DNA MER1_type 4 340 -1 2309 94 0 7 chr12 1798793 1799091 -142483398 + AluSx SINE Alu 1 296 -16 1795 180 21 8 chr12 1799221 1799593 -142482896 - MLT1B LTR MaLR 0 390 14 359 309 158 23 chr12 1799697 1799962 -142482527 - L2 LINE L2 -25 3288 2988 785 323 35 25 chr12 1800032 1800431 -142482058 - L2 LINE L2 -445 2869 2467 1870 157 17 7 chr12 1801068 1801367 -142481122 - AluJo SINE Alu -10 302 1 1833 142 77 19 chr12 1801504 1801829 -142480660 + MER2 DNA MER2_type 1 344 0 567 143 0 4 chr12 1802084 1802308 -142480181 + AluSx SINE Alu 1 301 -8 1517 155 62 38 chr12 1802370 1802660 -142479829 + AluJo SINE Alu 3 299 -13 21 57 0 0 chr12 1802824 1802859 -142479630 + AT_rich Low_complexity Low_complexity 1 35 0 2324 102 7 0 chr12 1803073 1803378 -142479111 - AluY SINE Alu -4 307 1 1267 137 0 6 chr12 1803436 1803611 -142478878 - AluSx SINE Alu -138 174 1 2007 104 53 20 chr12 1803743 1804099 -142478390 - HSMAR2 DNA Mariner -1 1301 934 * 4680 152 6 4 chr12 1804096 1804919 -142477570 - HSMAR2 DNA Mariner -477 825 1 1489 215 64 83 chr12 1805068 1805212 -142477277 + L1M4 LINE L1 2246 2391 -3755 1802 130 123 0 chr12 1805212 1805488 -142477001 + AluSx SINE Alu 1 310 -2 1489 215 64 83 chr12 1805488 1805727 -142476762 + L1M4 LINE L1 2391 2633 -3513 1610 202 3 21 chr12 1805727 1806009 -142476480 + AluJo SINE Alu 6 282 -30 1489 215 64 83 chr12 1806009 1806037 -142476452 + L1M4 LINE L1 2633 2660 -3486 182 37 37 0 chr12 1806037 1806064 -142476425 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1489 215 64 83 chr12 1806064 1806398 -142476091 + L1M4 LINE L1 2660 2979 -3167 1080 261 29 36 chr12 1806549 1807214 -142475275 - L1M4b LINE L1 -4652 2307 1550 2538 65 0 0 chr12 1807214 1807522 -142474967 - AluY SINE Alu -3 308 1 618 184 6 81 chr12 1807526 1807700 -142474789 - L1M4 LINE L1 -1127 5019 4859 2756 150 38 32 chr12 1807702 1808255 -142474234 - MER21A LTR ERV1 0 931 376 549 161 153 0 chr12 1808346 1808483 -142474006 - MER21A LTR ERV1 -773 158 1 706 196 164 32 chr12 1808496 1808807 -142473682 - L1M4 LINE L1 -1300 4846 4495 1282 193 23 19 chr12 1808807 1809066 -142473423 - AluJo SINE Alu -10 302 43 404 234 66 51 chr12 1809070 1809251 -142473238 - L1M4 LINE L1 -1642 4504 4316 1741 168 0 36 chr12 1809251 1809560 -142472929 + AluJo SINE Alu 1 298 -14 404 234 66 51 chr12 1809560 1809634 -142472855 - L1M4 LINE L1 -1830 4316 4245 246 294 49 12 chr12 1809783 1809946 -142472543 - L1M4 LINE L1 -1869 4277 4109 1656 162 7 48 chr12 1810482 1810791 -142471698 - AluJo SINE Alu -13 299 4 2061 93 31 71 chr12 1810881 1811203 -142471286 - AluSc SINE Alu 0 309 1 980 188 6 6 chr12 1811203 1811372 -142471117 - AluSg/x SINE Alu -4 306 135 231 266 210 42 chr12 1811605 1811748 -142470741 + MIR SINE MIR 86 252 -10 21 0 0 0 chr12 1811803 1811824 -142470665 + AT_rich Low_complexity Low_complexity 1 21 0 245 295 90 0 chr12 1812662 1812740 -142469749 + MIR SINE MIR 124 208 -54 244 269 42 57 chr12 1812978 1813171 -142469318 - L1ME4a LINE L1 -157 5964 5775 474 65 0 0 chr12 1813662 1813724 -142468765 + (CTA)n Simple_repeat Simple_repeat 1 62 0 1836 106 76 0 chr12 1813724 1813988 -142468501 - AluSx SINE Alu -28 284 1 2104 116 7 7 chr12 1814056 1814350 -142468139 - AluSc SINE Alu -15 294 1 366 268 121 17 chr12 1814716 1814947 -142467542 - MER112 DNA MER1_type 0 260 6 300 221 0 29 chr12 1814965 1815033 -142467456 - L2 LINE L2 -335 2978 2913 26 23 0 23 chr12 1815112 1815135 -142467354 + AT_rich Low_complexity Low_complexity 1 24 -19 2241 100 3 0 chr12 1815135 1815424 -142467065 - AluSx SINE Alu -22 290 1 26 23 0 23 chr12 1815424 1815444 -142467045 + AT_rich Low_complexity Low_complexity 24 43 0 1165 256 150 34 chr12 1815444 1815998 -142466491 - L2 LINE L2 -407 2907 2290 329 305 12 0 chr12 1817361 1817443 -142465046 - MIR3 SINE MIR -4 204 122 286 294 124 41 chr12 1817807 1817997 -142464492 - MIR SINE MIR -53 209 3 234 336 133 18 chr12 1818598 1818711 -142463778 + MER5A DNA MER1_type 60 185 -4 2044 121 0 4 chr12 1818719 1819000 -142463489 + AluSg SINE Alu 1 280 -30 235 0 57 0 chr12 1819004 1819039 -142463450 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 38 61 0 0 chr12 1819097 1819163 -142463326 + AT_rich Low_complexity Low_complexity 1 66 0 3561 175 29 7 chr12 1819296 1819674 -142462815 - L1MB8 LINE L1 -12 6166 5763 2157 184 65 50 chr12 1819674 1820216 -142462273 + MER44D DNA MER2_type 1 605 0 3561 175 29 7 chr12 1820216 1820557 -142461932 - L1MB8 LINE L1 -415 5763 5431 967 328 31 13 chr12 1820707 1821178 -142461311 + L2 LINE L2 2553 3038 -234 39 60 0 0 chr12 1821266 1821333 -142461156 + AT_rich Low_complexity Low_complexity 1 67 0 308 312 58 7 chr12 1821620 1821758 -142460731 - MIR SINE MIR 0 262 118 231 233 20 42 chr12 1822162 1822249 -142460240 + MER5A DNA MER1_type 87 189 0 439 214 53 46 chr12 1822338 1822469 -142460020 + MIR SINE MIR 123 254 -8 2058 143 0 3 chr12 1822670 1822964 -142459525 + AluJo SINE Alu 1 293 -19 452 290 8 30 chr12 1823032 1823163 -142459326 + MIR3 SINE MIR 45 172 -36 288 0 0 0 chr12 1823533 1823565 -142458924 + (CA)n Simple_repeat Simple_repeat 2 33 0 1482 251 81 21 chr12 1823569 1824048 -142458441 - L1ME3A LINE L1 -44 6126 5619 362 316 72 0 chr12 1824393 1824545 -142457944 + MIR SINE MIR 100 262 0 214 326 0 0 chr12 1825026 1825075 -142457414 - L2 LINE L2 -86 3186 3138 225 324 70 0 chr12 1825151 1825222 -142457267 - L2 LINE L2 -275 2997 2922 2495 75 7 3 chr12 1825962 1826269 -142456220 + AluSq SINE Alu 1 308 -5 576 282 68 37 chr12 1826581 1827071 -142455418 - MER110 LTR ERV1 0 468 1 1960 118 35 3 chr12 1828527 1828816 -142453673 - AluSq SINE Alu -15 298 1 1759 121 4 19 chr12 1828895 1829152 -142453337 - AluJb SINE Alu -15 297 45 26 30 0 0 chr12 1829427 1829460 -142453029 + AT_rich Low_complexity Low_complexity 1 33 0 527 108 151 58 chr12 1829869 1830008 -142452481 + MER106A DNA MER1_type 40 191 -45 1385 128 18 154 chr12 1830016 1830353 -142452136 + AluJo SINE Alu 1 291 -11 387 273 142 34 chr12 1830863 1831039 -142451450 - MIR3 SINE MIR 0 208 14 442 305 51 15 chr12 1831191 1831388 -142451101 + MIR SINE MIR 49 252 -10 2265 86 20 13 chr12 1833674 1833977 -142448512 - AluSc SINE Alu -4 305 1 1136 60 0 0 chr12 1833977 1834110 -142448379 - AluSc SINE Alu -176 133 1 247 306 121 34 chr12 1835798 1836020 -142446469 - MIR SINE MIR -12 250 11 2081 94 87 3 chr12 1836348 1836636 -142445853 - AluSp SINE Alu 0 313 2 4066 173 64 15 chr12 1837440 1838594 -142443895 + L1MB7 LINE L1 4886 6103 -81 22 0 0 0 chr12 1839718 1839740 -142442749 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 1840444 1840466 -142442023 + AT_rich Low_complexity Low_complexity 1 22 0 381 262 81 12 chr12 1841539 1841711 -142440778 + MER112 DNA MER1_type 66 249 -11 820 140 104 30 chr12 1841908 1842111 -142440378 - AluSg/x SINE Alu 0 349 135 1622 118 4 0 chr12 1842374 1842602 -142439887 - AluSq SINE Alu -13 300 72 194 364 0 15 chr12 1843106 1843172 -142439317 + MIR3 SINE MIR 4 68 -140 840 257 25 33 chr12 1843202 1843447 -142439042 - MIR SINE MIR 0 262 20 347 310 0 0 chr12 1843456 1843543 -142438946 + MIR3 SINE MIR 95 181 -27 818 148 0 95 chr12 1847918 1848087 -142434402 + Tigger3(Golem) DNA MER2_type 2884 3036 0 537 60 0 0 chr12 1848102 1848169 -142434320 + Alu SINE Alu 5 71 -239 423 243 133 46 chr12 1848189 1848407 -142434082 - L1 LINE L1 -1713 4433 4197 327 233 0 36 chr12 1848459 1848558 -142433931 - MIR SINE MIR -61 147 99 2205 95 7 3 chr12 1848980 1849274 -142433215 + AluSg SINE Alu 1 295 -15 184 212 0 0 chr12 1849389 1849422 -142433067 - L3b LINE CR1 -68 1515 1483 215 289 124 29 chr12 1849712 1849865 -142432624 + MIR SINE MIR 33 203 -5 292 233 27 14 chr12 1850952 1851025 -142431464 - MIR SINE MIR -13 249 176 378 209 70 12 chr12 1851057 1851143 -142431346 + MIR SINE MIR 113 203 -59 244 224 79 26 chr12 1851187 1851263 -142431226 + MIR SINE MIR 102 181 -81 1317 229 98 14 chr12 1853324 1854008 -142428481 - MER21B LTR ERV1 -71 792 16 298 165 39 107 chr12 1854011 1854114 -142428375 - MER21B LTR ERV1 -767 96 1 362 230 46 0 chr12 1854995 1855082 -142427407 + MER94 DNA DNA 23 113 -21 396 277 96 12 chr12 1855334 1855500 -142426989 - MIR SINE MIR -60 202 23 188 108 0 27 chr12 1860623 1860660 -142421829 + (GA)n Simple_repeat Simple_repeat 1 36 0 405 0 0 0 chr12 1860990 1861035 -142421454 + (TG)n Simple_repeat Simple_repeat 2 46 0 214 277 266 71 chr12 1861699 1861966 -142420523 + L2 LINE L2 2944 3262 -10 387 0 0 0 chr12 1863096 1863139 -142419350 + (TG)n Simple_repeat Simple_repeat 2 44 0 521 257 130 16 chr12 1863536 1863789 -142418700 + MLT1J LTR MaLR 28 309 -202 593 224 55 12 chr12 1865652 1865817 -142416672 - MER5A DNA MER1_type -4 185 14 880 238 112 59 chr12 1865947 1866455 -142416034 + MLT1F LTR MaLR 2 536 -6 205 268 0 18 chr12 1866626 1866682 -142415807 - L2 LINE L2 -5 3267 3213 1099 236 28 8 chr12 1867235 1867489 -142415000 + MER58 DNA MER1_type 1 259 -2161 190 296 214 0 chr12 1868305 1868403 -142414086 - MIR3 SINE MIR -38 170 52 400 232 42 18 chr12 1869634 1869802 -142412687 + (TG)n Simple_repeat Simple_repeat 1 172 0 387 289 95 40 chr12 1871524 1871748 -142410741 - MIR SINE MIR 0 262 18 759 199 130 0 chr12 1872187 1872348 -142410141 - MER5A DNA MER1_type -3 186 5 963 214 5 0 chr12 1872365 1872561 -142409928 + MER3 DNA MER1_type 10 206 -3 197 211 0 0 chr12 1872577 1872615 -142409874 - MIR SINE MIR -63 145 108 196 237 0 0 chr12 1873167 1873205 -142409284 - MIR3 SINE MIR -4 204 167 255 176 0 20 chr12 1873414 1873465 -142409024 - LTR12 LTR ERV1 -614 100 51 225 180 0 40 chr12 1873465 1873515 -142408974 - LTR30 LTR ERV1 -674 48 1 843 272 201 21 chr12 1873518 1873859 -142408630 + L2 LINE L2 2354 2632 -681 2207 137 0 7 chr12 1873859 1874166 -142408323 - AluSx SINE Alu -7 305 1 843 272 201 21 chr12 1874166 1874615 -142407874 + L2 LINE L2 2632 3303 -10 257 327 91 0 chr12 1874779 1874889 -142407600 + L3b LINE CR1 1291 1410 -173 209 169 0 92 chr12 1875452 1875517 -142406972 + CT-rich Low_complexity Low_complexity 1 59 0 488 265 0 6 chr12 1875719 1875900 -142406589 + (CA)n Simple_repeat Simple_repeat 1 180 0 362 316 37 42 chr12 1876136 1876326 -142406163 - MIR3 SINE MIR 0 208 20 10894 35 45 5 chr12 1876436 1877760 -142404729 + SVA Other Other 9 1384 -2 1657 24 0 28 chr12 1877775 1877986 -142404503 + SVA Other Other 1182 1386 0 221 179 0 18 chr12 1879493 1879549 -142402940 + CT-rich Low_complexity Low_complexity 4 58 0 467 337 51 6 chr12 1882899 1883074 -142399415 + MIR SINE MIR 21 203 -59 507 228 144 0 chr12 1883206 1883360 -142399129 - MER5A DNA MER1_type -9 180 1 212 296 14 28 chr12 1884788 1884859 -142397630 + MIR SINE MIR 46 115 -147 294 340 28 9 chr12 1885243 1885349 -142397140 - MIR SINE MIR -66 196 89 191 300 114 0 chr12 1887705 1887775 -142394714 - MIR3 SINE MIR -11 197 120 796 301 22 6 chr12 1891144 1891383 -142391106 + MIR SINE MIR 15 248 -14 195 373 0 0 chr12 1891432 1891491 -142390998 + L2 LINE L2 3255 3313 0 313 292 152 64 chr12 1891684 1891855 -142390634 - MIR SINE MIR 0 262 77 282 345 0 0 chr12 1892968 1893052 -142389437 + MIR SINE MIR 128 211 -51 219 36 0 0 chr12 1894397 1894425 -142388064 + (CA)n Simple_repeat Simple_repeat 2 29 0 470 371 108 0 chr12 1898459 1898672 -142383817 + MIR SINE MIR 8 243 -19 379 313 44 52 chr12 1898805 1899054 -142383435 + MIR SINE MIR 2 248 -14 290 372 0 0 chr12 1899060 1899154 -142383335 - MER5A DNA MER1_type -84 105 12 181 259 35 17 chr12 1899463 1899521 -142382968 + MIR SINE MIR 82 140 -68 598 253 25 31 chr12 1901930 1902092 -142380397 + MIR SINE MIR 46 206 -56 191 395 37 9 chr12 1902543 1902652 -142379837 + MIR3 SINE MIR 65 176 -32 184 98 24 24 chr12 1904351 1904392 -142378097 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 911 188 72 19 chr12 1904742 1904950 -142377539 - MER20 DNA MER1_type 0 219 1 238 286 133 10 chr12 1906547 1906645 -142375844 + MER5B DNA MER1_type 40 149 -29 1812 298 86 66 chr12 1906652 1907014 -142375475 - L1MC5 LINE L1 -61 7900 7547 995 145 0 6 chr12 1907014 1907173 -142375316 - L1MB8 LINE L1 -11 6167 6010 1812 298 86 66 chr12 1907173 1907737 -142374752 - L1MC5 LINE L1 -414 7547 6996 620 200 17 0 chr12 1907737 1907879 -142374610 - FLAM_C SINE Alu 0 145 2 1812 298 86 66 chr12 1907879 1909597 -142372892 - L1MC5 LINE L1 -965 6996 5313 1968 47 115 36 chr12 1909597 1909875 -142372614 + AluY SINE Alu 1 300 -11 1334 221 14 14 chr12 1909876 1910157 -142372332 - AluJb SINE Alu -31 281 1 1812 298 86 66 chr12 1910157 1910617 -142371872 - L1MC5 LINE L1 -2648 5313 4864 288 53 0 0 chr12 1910617 1910655 -142371834 + (TG)n Simple_repeat Simple_repeat 2 39 0 1812 298 86 66 chr12 1910655 1911303 -142371186 - L1MC5 LINE L1 -3097 4864 4026 827 137 0 8 chr12 1911362 1911486 -142371003 + FLAM_C SINE Alu 1 123 -20 377 248 30 20 chr12 1911488 1911589 -142370900 - L1MC5 LINE L1 -2191 3955 3854 832 293 9 9 chr12 1911751 1911976 -142370513 + MIR SINE MIR 6 230 -32 246 284 0 0 chr12 1912364 1912438 -142370051 - L1M4 LINE L1 -1560 4586 4513 280 386 0 15 chr12 1913138 1913270 -142369219 + MIR3 SINE MIR 76 205 -3 2081 142 0 0 chr12 1913377 1913680 -142368809 - AluSx SINE Alu -9 303 1 768 293 40 81 chr12 1913692 1913827 -142368662 + L2 LINE L2 2902 3041 -272 877 119 0 35 chr12 1913827 1913970 -142368519 - L1MB5 LINE L1 -8 6166 6029 768 293 40 81 chr12 1913970 1914264 -142368225 + L2 LINE L2 3041 3313 0 230 306 74 8 chr12 1914540 1914661 -142367828 - MIR3 SINE MIR -14 194 66 230 314 105 42 chr12 1915358 1915549 -142366940 + L2 LINE L2 2935 3137 -135 283 279 158 42 chr12 1916353 1916518 -142365971 - L2 LINE L2 -585 2729 2546 1464 238 93 12 chr12 1916741 1917170 -142365319 + MLT1C LTR MaLR 4 467 0 444 250 0 0 chr12 1918027 1918123 -142364366 - MER5B DNA MER1_type -5 173 78 1104 143 19 56 chr12 1918123 1918339 -142364150 + AluJo SINE Alu 83 290 -22 326 263 12 12 chr12 1918340 1918420 -142364069 - MER5B DNA MER1_type -95 83 4 494 252 29 58 chr12 1918543 1918749 -142363740 - MIR SINE MIR -41 221 22 398 299 0 0 chr12 1918889 1918976 -142363513 - MIR SINE MIR -162 100 14 504 192 151 7 chr12 1919413 1919559 -142362930 + MER3 DNA MER1_type 41 207 -2 241 133 67 0 chr12 1919527 1919572 -142362917 - MER3 DNA MER1_type -125 84 37 * 454 331 96 0 chr12 1919821 1919987 -142362502 + MIR SINE MIR 3 184 -78 2291 109 0 3 chr12 1920404 1920717 -142361772 - AluSx SINE Alu 0 312 1 2348 220 67 18 chr12 1920748 1921397 -142361092 - L1ME2 LINE L1 -36 6062 5447 1572 143 87 4 chr12 1921397 1921687 -142360802 - AluSx SINE Alu 0 312 1 2348 220 67 18 chr12 1921687 1922687 -142359802 - L1ME2 LINE L1 -651 5447 4291 1315 268 60 2 chr12 1924783 1925301 -142357188 - L1ME2 LINE L1 -1779 4301 3737 1541 293 60 36 chr12 1925303 1925591 -142356898 - L1ME2 LINE L1 -4452 1809 1529 1927 133 3 38 chr12 1925591 1925906 -142356583 - AluJo SINE Alu -8 304 1 1541 293 60 36 chr12 1925906 1926522 -142355967 - L1ME2 LINE L1 -4732 1529 884 4825 147 53 95 chr12 1926522 1927542 -142354947 + L1MA9 LINE L1 5108 6170 -142 189 0 0 0 chr12 1927542 1927563 -142354926 + (TATTG)n Simple_repeat Simple_repeat 4 24 0 4825 147 53 95 chr12 1927563 1927707 -142354782 + L1MA9 LINE L1 6170 6241 -71 1804 159 39 9 chr12 1927707 1928041 -142354448 - MER2 DNA MER2_type 0 344 1 4825 147 53 95 chr12 1928041 1928074 -142354415 + L1MA9 LINE L1 6241 6274 -38 1520 287 55 25 chr12 1928118 1928755 -142353734 + MLT2F LTR ERVL 1 656 -7 301 252 140 0 chr12 1928756 1928863 -142353626 - L1ME2 LINE L1 -5240 830 709 1015 276 54 27 chr12 1929249 1929654 -142352835 - L1ME2 LINE L1 -5617 453 38 461 272 27 15 chr12 1930007 1930347 -142352142 + (TG)n Simple_repeat Simple_repeat 1 344 0 227 253 14 14 chr12 1930426 1930572 -142351917 + (TG)n Simple_repeat Simple_repeat 2 147 0 258 324 11 39 chr12 1930589 1930771 -142351718 + (TG)n Simple_repeat Simple_repeat 1 177 0 511 240 99 9 chr12 1931932 1932123 -142350366 + MIR SINE MIR 23 224 -38 2008 306 136 16 chr12 1934445 1935341 -142347148 - L3 LINE CR1 -34 1543 540 189 319 56 14 chr12 1935399 1935471 -142347018 - L3 LINE CR1 -1150 427 353 192 329 13 13 chr12 1937064 1937143 -142345346 + L2 LINE L2 3142 3220 -93 235 236 106 24 chr12 1937673 1937796 -142344693 - MIR3 SINE MIR -72 136 4 306 298 40 40 chr12 1938559 1938710 -142343779 - MER5B DNA MER1_type -27 151 1 500 221 134 87 chr12 1940880 1941282 -142341207 + MLT1J LTR MaLR 78 498 -13 269 277 170 11 chr12 1942103 1942374 -142340115 + LTR16A LTR ERVL 130 443 -7 218 122 41 41 chr12 1942589 1942638 -142339851 + L2 LINE L2 2924 2972 -300 303 301 45 38 chr12 1942753 1942886 -142339603 + L2 LINE L2 3136 3269 -3 204 359 65 0 chr12 1942919 1943011 -142339478 + L3b LINE CR1 1258 1355 -228 374 260 103 63 chr12 1947289 1947639 -142334850 + L1ME LINE L1 600 963 -5156 699 310 42 40 chr12 1947711 1948279 -142334210 + L1ME LINE L1 1098 1666 -4463 21 0 0 0 chr12 1948450 1948471 -142334018 + AT_rich Low_complexity Low_complexity 1 21 0 625 176 17 34 chr12 1948471 1948590 -142333899 - FLAM_A SINE Alu -14 128 12 17781 163 25 23 chr12 1948820 1952235 -142330254 + L1MA4A LINE L1 7 3414 -3591 1797 117 0 11 chr12 1952235 1952499 -142329990 + AluSg1 SINE Alu 26 286 -23 17781 163 25 23 chr12 1952499 1954620 -142327869 + L1MA4A LINE L1 3414 5529 -1476 1435 191 7 24 chr12 1954620 1954913 -142327576 - AluJo SINE Alu -24 288 1 17781 163 25 23 chr12 1954913 1955363 -142327126 + L1MA4A LINE L1 5529 5977 -1028 207 0 0 0 chr12 1955363 1955386 -142327103 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 17781 163 25 23 chr12 1955386 1955581 -142326908 + L1MA4A LINE L1 5977 6170 -835 441 0 0 0 chr12 1955581 1955630 -142326859 + (CA)n Simple_repeat Simple_repeat 2 50 0 17781 163 25 23 chr12 1955630 1956020 -142326469 + L1MA4A LINE L1 6170 6608 -397 511 115 13 0 chr12 1956024 1956102 -142326387 + AluJ/FLAM SINE Alu 2 80 -232 2636 119 15 10 chr12 1956102 1956506 -142325983 + L1MA4A LINE L1 6599 7004 -1 477 289 71 16 chr12 1956508 1956761 -142325728 + L1ME LINE L1 2093 2359 -3770 670 279 32 42 chr12 1956766 1957174 -142325315 + L1ME LINE L1 2548 2951 -3178 * 1079 179 94 69 chr12 1957163 1957348 -142325141 + L1MB3 LINE L1 5101 5280 -903 207 0 0 0 chr12 1957348 1957371 -142325118 + (CAA)n Simple_repeat Simple_repeat 1 23 0 1079 179 94 69 chr12 1957371 1957618 -142324871 + L1MB3 LINE L1 5280 5532 -651 240 35 0 0 chr12 1957652 1957681 -142324808 + (TG)n Simple_repeat Simple_repeat 2 30 0 2114 144 22 27 chr12 1957691 1958094 -142324395 + L1MB3 LINE L1 5781 6181 -2 1326 286 78 14 chr12 1958119 1958951 -142323538 + L1ME LINE L1 2943 3827 -2302 906 272 22 31 chr12 1958960 1959112 -142323377 + L1ME LINE L1 5303 5455 -690 1743 155 14 30 chr12 1959112 1959409 -142323080 - AluJo SINE Alu -20 292 1 906 272 22 31 chr12 1959409 1959579 -142322910 + L1ME LINE L1 5455 5622 -523 15839 151 11 11 chr12 1959584 1963499 -142318990 + L1MA3 LINE L1 2393 6305 0 2735 101 24 13 chr12 1963499 1963953 -142318536 + L1MB5 LINE L1 1999 2457 -3927 * 6164 220 40 5 chr12 1963941 1965470 -142317019 + L1MB5 LINE L1 3975 5557 -825 201 309 18 0 chr12 1965613 1965668 -142316821 + L3 LINE CR1 1265 1320 -257 222 37 0 0 chr12 1966201 1966228 -142316261 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 2334 32 0 11 chr12 1968149 1968466 -142314023 - AluY SINE Alu 0 316 3 204 317 173 0 chr12 1968682 1968786 -142313703 + L2 LINE L2 3151 3272 0 645 236 28 0 chr12 1968988 1969132 -142313357 + L1MC1 LINE L1 5583 5730 -444 1762 176 176 2 chr12 1969138 1969536 -142312953 + L1MC1 LINE L1 5865 6331 -2 2352 184 14 0 chr12 1969552 1969992 -142312497 + L1MB5 LINE L1 5957 6402 -8 2014 96 24 3 chr12 1969996 1970288 -142312201 - AluSc SINE Alu -10 299 2 230 295 259 14 chr12 1970367 1970506 -142311983 + MIR3 SINE MIR 34 206 -2 310 270 36 36 chr12 1972353 1972490 -142309999 - MIR3 SINE MIR -68 140 4 293 267 168 0 chr12 1972728 1972829 -142309660 + MIR SINE MIR 25 142 -120 344 272 61 0 chr12 1973650 1973764 -142308725 + MIR3 SINE MIR 71 191 -17 257 358 0 8 chr12 1973928 1974062 -142308427 + (CA)n Simple_repeat Simple_repeat 2 134 0 206 207 17 0 chr12 1974076 1974134 -142308355 + (CA)n Simple_repeat Simple_repeat 1 59 0 199 225 0 0 chr12 1974828 1974868 -142307621 - L2 LINE L2 -6 3307 3268 188 314 89 8 chr12 1974976 1975100 -142307389 - L2 LINE L2 -221 3051 2918 349 161 0 0 chr12 1975253 1975309 -142307180 + MER91B DNA MER1_type 2 57 -133 581 272 38 5 chr12 1976086 1976270 -142306219 + MIR SINE MIR 39 228 -34 3606 246 73 23 chr12 1978104 1979158 -142303331 + MER69 DNA AcHobo 10 1116 -1410 526 231 12 99 chr12 1979165 1979317 -142303172 + MER69 DNA AcHobo 2276 2401 -125 2289 199 7 32 chr12 1979317 1979854 -142302635 - L1MB3 LINE L1 -2 6181 5658 526 231 12 99 chr12 1979854 1979944 -142302545 + MER69 DNA AcHobo 2401 2497 -29 565 246 55 27 chr12 1980269 1980489 -142302000 + L2 LINE L2 2592 2817 -497 256 196 0 0 chr12 1980504 1980560 -142301929 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1980598 1980654 -142301835 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1980692 1980748 -142301741 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1980786 1980842 -142301647 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1980880 1980936 -142301553 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1980974 1981030 -142301459 - MER69 DNA AcHobo -128 2398 2343 243 293 85 38 chr12 1981226 1981438 -142301051 - LTR33 LTR ERVL -7 514 293 429 254 0 42 chr12 1981686 1981828 -142300661 + L1MB7 LINE L1 6044 6179 -5 239 202 24 36 chr12 1981971 1982055 -142300434 + L2 LINE L2 3181 3263 -50 2155 161 68 68 chr12 1982317 1982821 -142299668 + L1MB3 LINE L1 5680 6183 0 2434 42 0 26 chr12 1983031 1983338 -142299151 - AluY SINE Alu -12 299 1 315 0 0 0 chr12 1983770 1983805 -142298684 + (TG)n Simple_repeat Simple_repeat 1 35 0 * 390 21 0 0 chr12 1983804 1983851 -142298638 + (GA)n Simple_repeat Simple_repeat 1 47 0 464 225 92 35 chr12 1984627 1984800 -142297689 + MIR3 SINE MIR 15 197 -11 281 313 179 0 chr12 1985061 1985173 -142297316 + MIR SINE MIR 23 154 -108 568 257 145 36 chr12 1985175 1985451 -142297038 - MLT1L LTR MaLR 0 615 310 268 226 0 0 chr12 1985466 1985519 -142296970 - MLT1J LTR MaLR -348 163 111 238 284 15 0 chr12 1985638 1985705 -142296784 + MIR SINE MIR 176 243 -19 277 331 99 33 chr12 1985949 1986100 -142296389 + MIR3 SINE MIR 34 194 -14 211 211 0 0 chr12 1986192 1986230 -142296259 + (CA)n Simple_repeat Simple_repeat 1 38 0 201 398 37 19 chr12 1987729 1987890 -142294599 - MIR3 SINE MIR -8 200 37 264 261 185 11 chr12 1988201 1988293 -142294196 + MIR SINE MIR 63 170 -92 956 145 6 11 chr12 1988710 1989076 -142293413 + GA-rich Low_complexity Low_complexity 1 364 0 203 329 86 26 chr12 1989341 1989493 -142292996 - L2 LINE L2 -11 3261 3101 585 280 56 13 chr12 1989680 1989912 -142292577 - MLT1L LTR MaLR -14 601 360 195 250 78 16 chr12 1989913 1989977 -142292512 + MER5A DNA MER1_type 65 132 -57 983 139 36 0 chr12 1990469 1990635 -142291854 + AluJo SINE Alu 121 292 -20 583 243 46 92 chr12 1990685 1990989 -142291500 + L1ME3 LINE L1 5863 6152 -10 351 253 12 6 chr12 1991863 1992029 -142290460 + (TG)n Simple_repeat Simple_repeat 2 168 0 251 213 19 19 chr12 1992052 1992160 -142290329 + (TG)n Simple_repeat Simple_repeat 2 109 0 252 131 0 98 chr12 1992160 1992221 -142290268 + MER4-int LTR ERV1 1111 1165 -5433 262 368 56 7 chr12 1992535 1992679 -142289810 + MIR3 SINE MIR 47 197 -11 311 280 136 0 chr12 1993328 1993446 -142289043 - MER94 DNA DNA 0 134 1 21 0 0 0 chr12 1993798 1993819 -142288670 + AT_rich Low_complexity Low_complexity 1 21 0 186 191 0 0 chr12 1994164 1994211 -142288278 + (CA)n Simple_repeat Simple_repeat 1 47 0 335 323 179 12 chr12 1994215 1994472 -142288017 + L2 LINE L2 2914 3213 -59 191 189 27 0 chr12 1998341 1998378 -142284111 + L2 LINE L2 3214 3251 -21 1052 80 0 0 chr12 1999429 1999567 -142282922 - L1P LINE L1 -4166 1980 1843 1443 76 0 0 chr12 1999591 1999776 -142282713 - AluY SINE Alu -126 185 1 5475 135 28 35 chr12 1999779 2000762 -142281727 - L1P LINE L1 -4288 1858 883 24882 80 7 32 chr12 2000763 2004999 -142277490 + L1PA8A LINE L1 1987 6113 -18 1736 154 17 10 chr12 2005663 2005962 -142276527 - AluJo SINE Alu -4 308 8 777 91 0 27 chr12 2006829 2006939 -142275550 - FLAM_C SINE Alu -35 108 2 525 221 181 38 chr12 2007261 2007484 -142275005 + MIR SINE MIR 20 261 -1 1561 181 17 17 chr12 2009628 2009921 -142272568 - AluJo SINE Alu -19 293 1 2106 100 0 10 chr12 2009964 2010264 -142272225 + AluSq SINE Alu 1 297 -16 407 267 67 22 chr12 2010649 2010784 -142271705 + L2 LINE L2 3173 3313 0 1181 173 4 9 chr12 2011136 2011362 -142271127 - AluJo SINE Alu -2 310 86 261 0 0 0 chr12 2012132 2012161 -142270328 + (CTG)n Simple_repeat Simple_repeat 1 29 0 1752 174 6 3 chr12 2012875 2013186 -142269303 + AluJo SINE Alu 1 312 0 1696 160 24 3 chr12 2013832 2014125 -142268364 - AluJo SINE Alu -7 305 7 436 304 16 47 chr12 2016321 2016512 -142265977 + L1ME4a LINE L1 5935 6119 -2 409 232 50 0 chr12 2016911 2017010 -142265479 + L1 LINE L1 5002 5105 -1041 289 231 31 0 chr12 2017064 2017129 -142265360 + L1 LINE L1 5027 5093 -1053 345 211 40 0 chr12 2017129 2017205 -142265284 + L1 LINE L1 5027 5105 -1041 266 224 35 0 chr12 2017206 2017264 -142265225 + L1 LINE L1 5039 5098 -1048 * 314 237 40 0 chr12 2017259 2017335 -142265154 + L1 LINE L1 5027 5105 -1041 265 234 47 0 chr12 2017336 2017400 -142265089 + L1 LINE L1 5039 5105 -1041 * 310 237 40 0 chr12 2017389 2017465 -142265024 + L1 LINE L1 5027 5105 -1041 283 250 40 0 chr12 2017454 2017530 -142264959 + L1 LINE L1 5027 5105 -1041 * 326 224 40 0 chr12 2017519 2017595 -142264894 + L1 LINE L1 5027 5105 -1041 270 263 40 0 chr12 2017584 2017660 -142264829 + L1 LINE L1 5027 5105 -1041 * 248 276 40 0 chr12 2017649 2017725 -142264764 + L1 LINE L1 5027 5105 -1041 * 270 263 40 0 chr12 2017714 2017790 -142264699 + L1 LINE L1 5027 5105 -1041 * 276 246 31 0 chr12 2017779 2017844 -142264645 + L1 LINE L1 5027 5093 -1053 306 237 40 0 chr12 2017844 2017920 -142264569 + L1 LINE L1 5027 5105 -1041 239 226 38 0 chr12 2017921 2017974 -142264515 + L1 LINE L1 5039 5093 -1053 310 237 40 0 chr12 2017974 2018050 -142264439 + L1 LINE L1 5027 5105 -1041 6139 157 16 17 chr12 2018104 2018652 -142263837 + L1MA8 LINE L1 5027 5574 -717 2322 74 0 3 chr12 2018652 2018951 -142263538 + AluY SINE Alu 1 298 -13 6139 157 16 17 chr12 2018951 2019659 -142262830 + L1MA8 LINE L1 5574 6289 -2 323 349 60 13 chr12 2019678 2019827 -142262662 - L3 LINE CR1 -1 1576 1421 200 410 19 32 chr12 2020660 2020816 -142261673 - L2 LINE L2 -192 3080 2927 385 199 108 19 chr12 2020895 2021042 -142261447 + MER88 LTR ERVL 79 206 -258 * 1725 240 75 10 chr12 2020938 2021421 -142261068 - MER74B LTR ERVL -74 548 35 290 342 51 8 chr12 2021755 2021872 -142260617 - L2 LINE L2 -1 3271 3150 401 245 46 94 chr12 2021919 2022232 -142260257 - L1MC5 LINE L1 -393 7415 7219 * 806 271 151 41 chr12 2022201 2022891 -142259598 - L1MC4 LINE L1 -742 7219 6557 324 247 132 50 chr12 2023250 2023432 -142259057 - L1M4 LINE L1 -812 5334 5138 381 296 36 32 chr12 2023433 2023653 -142258836 - L1 LINE L1 -1032 5114 4894 295 295 6 12 chr12 2024065 2024231 -142258258 - L1 LINE L1 -1602 4544 4380 24 77 0 0 chr12 2024374 2024426 -142258063 + AT_rich Low_complexity Low_complexity 1 52 0 902 216 31 53 chr12 2024862 2025089 -142257400 + MER58A DNA MER1_type 2 223 -1 1848 112 56 11 chr12 2027057 2027343 -142255146 + AluSq SINE Alu 1 299 -14 23 0 0 0 chr12 2027716 2027739 -142254750 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr12 2028520 2028540 -142253949 + (T)n Simple_repeat Simple_repeat 1 20 0 314 322 17 0 chr12 2031474 2031589 -142250900 - MIR3 SINE MIR -5 203 87 351 326 0 0 chr12 2031756 2031854 -142250635 + GA-rich Low_complexity Low_complexity 3 100 0 304 314 198 16 chr12 2033004 2033125 -142249364 + L2 LINE L2 3129 3271 -1 274 204 23 11 chr12 2035810 2035898 -142246591 + GA-rich Low_complexity Low_complexity 4 92 0 2672 215 34 33 chr12 2037505 2038006 -142244483 - L1ME2 LINE L1 -9 6549 6050 2033 96 0 14 chr12 2038006 2038286 -142244203 - AluSx SINE Alu -34 278 3 2126 110 10 0 chr12 2038287 2038586 -142243903 - AluSx SINE Alu -10 302 1 2672 215 34 33 chr12 2038586 2038818 -142243671 - L1ME2 LINE L1 -507 6051 5813 1616 224 53 13 chr12 2038826 2039282 -142243207 + L1ME2 LINE L1 5761 6234 -322 840 202 40 16 chr12 2039308 2039560 -142242929 - L1ME2 LINE L1 -745 5795 5538 22 70 0 0 chr12 2039938 2039981 -142242508 + AT_rich Low_complexity Low_complexity 1 43 0 256 361 82 25 chr12 2040544 2040666 -142241823 + L2 LINE L2 3123 3251 -21 201 323 87 52 chr12 2040737 2040966 -142241523 - L2 LINE L2 -213 3059 2823 5132 230 70 36 chr12 2041137 2041182 -142241307 - L1ME2 LINE L1 -2364 4176 4134 2676 153 32 0 chr12 2041182 2041654 -142240835 - L1MB3 LINE L1 -2 6181 5695 5132 230 70 36 chr12 2041654 2044749 -142237740 - L1ME2 LINE L1 -2406 4134 954 2437 66 3 10 chr12 2044783 2045087 -142237402 - AluY SINE Alu -9 302 1 243 287 56 19 chr12 2045200 2045308 -142237181 - L1ME2 LINE L1 -5632 898 787 244 289 48 32 chr12 2045696 2045882 -142236607 - L1ME2 LINE L1 -5883 647 59 657 263 129 51 chr12 2046400 2047066 -142235423 - HAL1 LINE L1 0 2507 1790 1314 259 35 20 chr12 2047081 2047428 -142235061 - MLT1I LTR MaLR 0 409 58 355 209 143 9 chr12 2047577 2047682 -142234807 - HAL1 LINE L1 -2388 119 1 774 174 0 0 chr12 2048077 2048198 -142234291 + FLAM_A SINE Alu 1 121 -12 514 163 0 22 chr12 2048224 2048316 -142234173 + FRAM SINE Alu 61 150 -26 218 238 50 28 chr12 2048325 2048407 -142234082 + GA-rich Low_complexity Low_complexity 5 72 0 2038 135 7 13 chr12 2048407 2048711 -142233778 + AluSx SINE Alu 1 302 -10 324 351 107 19 chr12 2049051 2049256 -142233233 + MIR SINE MIR 28 250 -12 278 266 55 37 chr12 2050195 2050304 -142232185 + MIR SINE MIR 108 218 -44 1008 180 112 52 chr12 2050346 2050651 -142231838 - MER33 DNA MER1_type 0 324 2 21 36 0 0 chr12 2050800 2050828 -142231661 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr12 2052602 2052632 -142229857 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 57 0 0 chr12 2052725 2052760 -142229729 + AT_rich Low_complexity Low_complexity 1 35 0 180 302 60 9 chr12 2054751 2054867 -142227622 + L2 LINE L2 2148 2269 -1045 248 297 126 50 chr12 2055337 2055494 -142226995 + L2 LINE L2 2866 3040 -232 1264 128 33 83 chr12 2055494 2055736 -142226753 + MER30 DNA MER1_type 1 230 0 248 297 126 50 chr12 2055736 2055760 -142226729 + L2 LINE L2 3040 3061 -211 2133 88 27 27 chr12 2056221 2056515 -142225974 + AluSg SINE Alu 1 294 -16 1197 151 11 0 chr12 2058021 2058207 -142224282 + MER5A DNA MER1_type 1 188 -1 1763 125 14 61 chr12 2058404 2058722 -142223767 + AluJo SINE Alu 1 304 0 2349 84 0 0 chr12 2059729 2060028 -142222461 + AluSq SINE Alu 1 299 -14 249 225 42 42 chr12 2060603 2060674 -142221815 - MER5B DNA MER1_type -21 157 87 616 158 31 8 chr12 2060781 2060908 -142221581 - MER20 DNA MER1_type -89 130 1 4294 184 34 58 chr12 2063860 2064993 -142217496 + Charlie1a DNA MER1_type 1 1106 -349 491 110 7 208 chr12 2065014 2065102 -142217387 + Charlie1a DNA MER1_type 1333 1379 -1382 2382 83 0 0 chr12 2065102 2065402 -142217087 + AluSg SINE Alu 1 300 -10 491 110 7 208 chr12 2065402 2065467 -142217022 + Charlie1a DNA MER1_type 1379 1455 0 379 225 0 0 chr12 2065844 2065924 -142216565 + MER112 DNA MER1_type 172 251 -9 193 273 18 0 chr12 2066726 2066781 -142215708 + L2 LINE L2 2919 2974 -298 1262 153 0 5 chr12 2067076 2067309 -142215180 - AluJo SINE Alu 0 316 85 236 167 0 0 chr12 2067317 2067365 -142215124 - Alu SINE Alu -170 132 85 277 261 14 43 chr12 2067444 2067513 -142214976 + L2 LINE L2 3194 3260 -12 201 308 0 0 chr12 2068971 2069049 -142213440 + (TTA)n Simple_repeat Simple_repeat 2 79 0 196 246 18 70 chr12 2069123 2069180 -142213309 - L3 LINE CR1 -130 1447 1394 2369 93 0 7 chr12 2069841 2070151 -142212338 + AluSq SINE Alu 1 308 -5 212 213 363 0 chr12 2070473 2070553 -142211936 + MIR3 SINE MIR 93 201 -7 1146 176 40 0 chr12 2071283 2071482 -142211007 + MER58A DNA MER1_type 4 210 -14 224 323 46 92 chr12 2071524 2071654 -142210835 - L2 LINE L2 -22 3250 3127 690 293 59 36 chr12 2072048 2072301 -142210188 + MIR SINE MIR 1 259 -3 636 329 12 0 chr12 2073398 2073562 -142208927 - L2 LINE L2 0 3272 3107 200 200 67 0 chr12 2074471 2074516 -142207973 - MIR3 SINE MIR -54 154 107 415 240 143 19 chr12 2074565 2074719 -142207770 + MER5B DNA MER1_type 6 178 0 511 290 124 11 chr12 2074743 2074929 -142207560 + MIR SINE MIR 43 249 -13 280 229 49 0 chr12 2074954 2075015 -142207474 - MIR3 SINE MIR -132 76 13 349 244 0 191 chr12 2075169 2075337 -142207152 - L2 LINE L2 -1 3271 3136 2361 90 3 3 chr12 2075399 2075700 -142206789 - AluSq SINE Alu -8 305 5 580 217 101 0 chr12 2075774 2075912 -142206577 - MER5B DNA MER1_type -26 152 1 215 298 156 14 chr12 2076010 2076151 -142206338 - L2 LINE L2 -530 2784 2624 355 189 27 0 chr12 2076951 2077025 -142205464 - MER58 DNA MER1_type -106 109 34 1626 231 2 33 chr12 2077040 2077464 -142205025 + MER63 DNA MER1_type 649 1059 -2 1919 161 13 7 chr12 2078154 2078464 -142204025 + AluJo SINE Alu 1 312 0 620 153 42 7 chr12 2078464 2078608 -142203881 + GA-rich Low_complexity Low_complexity 4 152 0 212 242 15 0 chr12 2078981 2079047 -142203442 + CT-rich Low_complexity Low_complexity 1 67 0 773 287 24 24 chr12 2079142 2079393 -142203096 - MIR SINE MIR 0 262 12 545 302 174 12 chr12 2079719 2079961 -142202528 - L3 LINE CR1 -8 1569 1289 439 219 57 49 chr12 2080173 2080296 -142202193 - MIR SINE MIR -108 154 31 1010 207 137 43 chr12 2080307 2080372 -142202117 - MLT1A1 LTR MaLR -5 360 303 2353 89 0 3 chr12 2080372 2080665 -142201824 + AluSq SINE Alu 2 293 -20 1010 207 137 43 chr12 2080665 2080928 -142201561 - MLT1A1 LTR MaLR -62 303 1 3187 155 11 71 chr12 2080932 2081438 -142201051 + MER6A DNA MER2_type 1 461 -404 1805 142 68 4 chr12 2081438 2081719 -142200770 - AluJo SINE Alu -13 299 1 3187 155 11 71 chr12 2081719 2081856 -142200633 + MER6A DNA MER2_type 461 605 0 810 222 66 0 chr12 2081921 2082088 -142200401 + MER45A DNA AcHobo 1 178 0 211 111 0 28 chr12 2082896 2082932 -142199557 + MIR SINE MIR 21 55 -153 540 217 217 11 chr12 2083323 2083636 -142198853 - MLT1J LTR MaLR -23 488 82 472 264 78 9 chr12 2087349 2087498 -142194991 - MIR3 SINE MIR -48 160 1 502 235 136 128 chr12 2087605 2087856 -142194633 + MIR SINE MIR 10 262 0 196 186 0 102 chr12 2088049 2088108 -142194381 - MIR SINE MIR -63 145 93 1775 185 46 0 chr12 2088245 2088596 -142193893 - L1MB5 LINE L1 0 6174 5808 269 273 30 0 chr12 2090619 2090685 -142191804 + MER5B DNA MER1_type 17 84 -94 396 82 0 0 chr12 2090942 2091003 -142191486 + (TG)n Simple_repeat Simple_repeat 2 62 0 262 0 53 0 chr12 2092608 2092646 -142189843 + (CAA)n Simple_repeat Simple_repeat 2 41 0 307 351 153 4 chr12 2092751 2093019 -142189470 + L3 LINE CR1 954 1261 -316 693 234 85 51 chr12 2093025 2093260 -142189229 - MIR SINE MIR 0 262 20 430 364 30 4 chr12 2093274 2093505 -142188984 + L3 LINE CR1 1268 1504 -73 243 275 150 33 chr12 2093689 2093809 -142188680 - L2 LINE L2 0 3313 3180 22 94 0 0 chr12 2094084 2094148 -142188341 + GC_rich Low_complexity Low_complexity 1 64 0 654 337 53 16 chr12 2094657 2094900 -142187589 - L3b LINE CR1 -7 1576 1325 2111 113 24 0 chr12 2095447 2095738 -142186751 - AluSg SINE Alu -12 298 1 685 214 151 0 chr12 2096718 2096877 -142185612 + MER5A DNA MER1_type 7 189 0 491 335 77 24 chr12 2098444 2098731 -142183758 - L2 LINE L2 0 3272 2971 325 319 126 28 chr12 2099558 2099740 -142182749 + L3b LINE CR1 1249 1448 -135 285 370 0 10 chr12 2099834 2099934 -142182555 - MIR SINE MIR -116 146 48 2539 71 0 0 chr12 2100242 2100550 -142181939 - AluY SINE Alu -3 308 1 2143 216 18 11 chr12 2100870 2101440 -142181049 - Charlie2 DNA MER1_type -18 2844 2271 488 272 37 49 chr12 2101534 2101780 -142180709 - Charlie2 DNA MER1_type -2461 321 79 544 335 50 30 chr12 2102243 2102604 -142179885 - MLT1I LTR MaLR -2 407 40 2948 13 0 0 chr12 2102614 2102929 -142179560 - AluYb8 SINE Alu -3 315 1 255 325 18 74 chr12 2104345 2104508 -142177981 + MIR3 SINE MIR 17 170 -38 1184 251 147 16 chr12 2104731 2105174 -142177315 + MLT1D LTR MaLR 5 505 0 236 333 70 18 chr12 2105345 2105459 -142177030 - MIR SINE MIR -48 214 95 319 302 88 25 chr12 2106060 2106219 -142176270 + MIR SINE MIR 12 180 -82 192 279 0 0 chr12 2106225 2106268 -142176221 + L2 LINE L2 3270 3312 -1 612 296 104 5 chr12 2106273 2106493 -142175996 - MIR SINE MIR -1 261 20 248 87 22 43 chr12 2106564 2106610 -142175879 - L2 LINE L2 -8 3305 3261 650 274 46 13 chr12 2106667 2107229 -142175260 - MLT2F LTR ERVL 0 663 1 189 0 0 0 chr12 2107827 2107848 -142174641 + (GAA)n Simple_repeat Simple_repeat 1 21 0 282 304 101 9 chr12 2107925 2108142 -142174347 - L1ME4a LINE L1 -117 6004 5768 830 238 39 15 chr12 2108146 2108352 -142174137 + MIR SINE MIR 14 224 -38 321 268 39 1 chr12 2108360 2108447 -142174042 - L1ME4a LINE L1 -347 5774 5684 195 302 79 0 chr12 2108508 2108571 -142173918 - L2 LINE L2 -2 3270 3203 872 240 39 31 chr12 2109197 2109451 -142173038 + MIR SINE MIR 7 262 0 2509 227 125 43 chr12 2109876 2110940 -142171549 - L2 LINE L2 0 3313 2146 217 230 48 36 chr12 2111466 2111631 -142170858 + (CGCGG)n Simple_repeat Simple_repeat 2 168 0 27 29 0 0 chr12 2111658 2111692 -142170797 + GC_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr12 2111725 2111761 -142170728 + GC_rich Low_complexity Low_complexity 1 36 0 22 80 0 0 chr12 2111776 2111826 -142170663 + GC_rich Low_complexity Low_complexity 1 50 0 224 0 40 80 chr12 2111868 2111918 -142170571 + (CGGG)n Simple_repeat Simple_repeat 1 48 0 31 44 0 0 chr12 2112002 2112047 -142170442 + GC_rich Low_complexity Low_complexity 1 45 0 29 47 0 0 chr12 2112146 2112189 -142170300 + GC_rich Low_complexity Low_complexity 1 43 0 23 114 0 0 chr12 2112648 2112762 -142169727 + GC_rich Low_complexity Low_complexity 1 114 0 32 114 0 0 chr12 2112932 2113090 -142169399 + GC_rich Low_complexity Low_complexity 1 158 0 504 59 0 0 chr12 2115145 2115213 -142167276 + (TG)n Simple_repeat Simple_repeat 2 69 0 194 227 67 53 chr12 2115463 2115538 -142166951 + L3 LINE CR1 115 190 -1387 225 247 173 0 chr12 2118667 2118748 -142163741 - MIR3 SINE MIR -6 202 108 257 274 0 74 chr12 2120111 2120206 -142162283 + MIR SINE MIR 124 211 -51 689 288 56 13 chr12 2121188 2121421 -142161068 - MIR SINE MIR 0 262 20 597 176 5 0 chr12 2121896 2122098 -142160391 - L1MB7 LINE L1 -1 6183 5945 2250 102 3 0 chr12 2122128 2122423 -142160066 - AluSc SINE Alu -13 296 1 1395 162 30 0 chr12 2122645 2122921 -142159568 - L1MB5 LINE L1 -298 5876 5589 205 343 53 91 chr12 2124410 2125107 -142157382 - L2 LINE L2 -2 3270 2599 345 125 0 0 chr12 2126424 2126480 -142156009 + (TG)n Simple_repeat Simple_repeat 2 57 0 1654 181 52 0 chr12 2128792 2129079 -142153410 - AluJo SINE Alu -10 302 1 470 289 93 29 chr12 2129358 2129823 -142152666 - L1MEd LINE L1 -746 1744 1226 707 181 14 12 chr12 2129825 2130097 -142152392 + CT-rich Low_complexity Low_complexity 1 272 0 378 120 0 0 chr12 2130115 2130190 -142152299 + (CCTG)n Simple_repeat Simple_repeat 2 76 0 1516 183 18 35 chr12 2130215 2130500 -142151989 - AluJb SINE Alu -32 280 1 500 256 67 41 chr12 2130505 2130774 -142151715 - L1MEd LINE L1 -4940 1179 904 215 222 14 42 chr12 2130936 2131008 -142151481 + MIR SINE MIR 147 216 -46 206 116 23 0 chr12 2131144 2131187 -142151302 + (TA)n Simple_repeat Simple_repeat 1 44 0 1971 143 0 3 chr12 2131187 2131474 -142151015 - AluSx SINE Alu -26 286 1 180 339 0 0 chr12 2131802 2131864 -142150625 - L2 LINE L2 -3 3310 3249 210 336 96 39 chr12 2131891 2131995 -142150494 - L2 LINE L2 -9 3263 3154 533 209 32 25 chr12 2132824 2132982 -142149507 + MER117 DNA MER1_type 5 163 -34 261 364 98 17 chr12 2133283 2133456 -142149033 - MIR SINE MIR 0 262 76 550 294 0 7 chr12 2134397 2134540 -142147949 - MIR SINE MIR -118 144 3 256 131 16 16 chr12 2135442 2135503 -142146986 + CT-rich Low_complexity Low_complexity 4 64 0 328 308 9 9 chr12 2136436 2136543 -142145946 - MIR SINE MIR 0 262 156 283 310 26 9 chr12 2136631 2136747 -142145742 + L1MEd LINE L1 265 382 -5737 1944 160 31 46 chr12 2136903 2136974 -142145515 + L1MB1 LINE L1 5716 5787 -381 1849 187 19 21 chr12 2136974 2137349 -142145140 + MLT1A2 LTR MaLR 1 374 0 1944 160 31 46 chr12 2137349 2137676 -142144813 + L1MB1 LINE L1 5787 6118 -50 5122 27 0 3 chr12 2137676 2138269 -142144220 + L1PA4 LINE L1 5565 6155 0 1944 160 31 46 chr12 2138269 2138283 -142144206 + L1MB1 LINE L1 6118 6131 -37 1864 171 30 22 chr12 2138283 2138645 -142143844 - MLT1A1 LTR MaLR 0 365 1 1944 160 31 46 chr12 2138645 2138684 -142143805 + L1MB1 LINE L1 6131 6168 0 619 278 70 67 chr12 2138810 2138953 -142143536 + L1MEd LINE L1 678 819 -1671 2239 135 0 3 chr12 2138953 2139265 -142143224 + AluSx SINE Alu 1 311 -1 619 278 70 67 chr12 2139265 2139294 -142143195 + L1MEd LINE L1 819 846 -1644 2508 93 0 0 chr12 2139294 2139605 -142142884 + AluY SINE Alu 1 311 0 619 278 70 67 chr12 2139605 2140263 -142142226 + L1MEd LINE L1 846 1615 -875 2515 57 0 3 chr12 2140263 2140559 -142141930 + AluY SINE Alu 1 295 -16 619 278 70 67 chr12 2140559 2140639 -142141850 + L1MEd LINE L1 1615 1693 -797 350 255 142 21 chr12 2140883 2141024 -142141465 - MIR SINE MIR 0 262 105 265 290 21 21 chr12 2141120 2141213 -142141276 - MIR SINE MIR -156 106 14 182 218 182 0 chr12 2142515 2142570 -142139919 + MIR SINE MIR 84 148 -114 321 232 146 0 chr12 2142828 2142910 -142139579 - L2 LINE L2 -2 3311 3218 22 35 0 0 chr12 2142967 2142996 -142139493 + AT_rich Low_complexity Low_complexity 1 29 0 2672 291 52 23 chr12 2143158 2144139 -142138350 - L3 LINE CR1 -44 1533 525 665 343 141 36 chr12 2144229 2145225 -142137264 + L2 LINE L2 2159 3272 0 1200 238 63 58 chr12 2145486 2145914 -142136575 - MLT1J2 LTR MaLR 0 450 21 247 290 174 61 chr12 2146448 2146776 -142135713 + L3b LINE CR1 1211 1575 -8 258 323 56 71 chr12 2146902 2147100 -142135389 + MIR SINE MIR 24 218 -44 812 263 123 4 chr12 2147362 2147590 -142134899 + MIR SINE MIR 8 262 0 370 250 70 62 chr12 2148337 2148465 -142134024 - L2 LINE L2 -8 3264 3136 4084 140 62 35 chr12 2148591 2148727 -142133762 - L1MB2 LINE L1 -2 6169 6038 2263 97 17 0 chr12 2148727 2149027 -142133462 + AluY SINE Alu 1 305 -6 4084 140 62 35 chr12 2149027 2149285 -142133204 - L1MB2 LINE L1 -133 6038 5788 2525 91 0 0 chr12 2149285 2149592 -142132897 - AluSx SINE Alu -5 307 1 4084 140 62 35 chr12 2149592 2150025 -142132464 - L1MB2 LINE L1 -383 5788 5319 1853 182 173 18 chr12 2150285 2150719 -142131770 - MLT1D LTR MaLR 0 505 5 312 337 46 11 chr12 2150809 2150984 -142131505 + MIR3 SINE MIR 10 190 -18 466 269 17 8 chr12 2151701 2151820 -142130669 - MIR SINE MIR -90 172 53 182 288 206 0 chr12 2152317 2152390 -142130099 - L2 LINE L2 -21 3251 3164 185 148 148 19 chr12 2153050 2153104 -142129385 - MIR SINE MIR -94 168 108 595 235 25 24 chr12 2153507 2153680 -142128809 - MIR3 SINE MIR 0 208 34 297 271 127 25 chr12 2153994 2154112 -142128377 - MIR SINE MIR -132 130 1 305 294 64 9 chr12 2154935 2155044 -142127445 - L2 LINE L2 -3 3269 3155 4004 148 35 20 chr12 2155544 2156109 -142126380 - L1MB4 LINE L1 -1 6179 5599 2573 58 0 13 chr12 2156109 2156420 -142126069 - AluY SINE Alu -4 307 1 4004 148 35 20 chr12 2156420 2156608 -142125881 - L1MB4 LINE L1 -581 5599 5415 507 357 33 0 chr12 2156918 2157100 -142125389 - MIR3 SINE MIR 0 208 21 298 321 30 15 chr12 2157808 2157939 -142124550 - MIR SINE MIR -51 211 79 866 283 14 5 chr12 2158824 2159043 -142123446 - MIR SINE MIR -40 222 2 486 311 52 35 chr12 2159087 2159138 -142123351 - L1ME4a LINE L1 -134 5987 5938 2279 96 0 63 chr12 2159138 2159470 -142123019 + AluSx SINE Alu 1 311 -1 486 311 52 35 chr12 2159470 2159481 -142123008 - L1ME4a LINE L1 -183 5938 5929 1562 136 26 49 chr12 2159481 2159745 -142122744 + AluJb SINE Alu 40 297 -15 1357 126 215 19 chr12 2159745 2160006 -142122483 + AluJb SINE Alu 1 312 0 486 311 52 35 chr12 2160006 2160288 -142122201 - L1ME4a LINE L1 -191 5930 5635 335 310 71 7 chr12 2160964 2161119 -142121370 - L2 LINE L2 0 3313 3149 194 281 225 0 chr12 2161232 2161321 -142121168 - L2 LINE L2 -5 3308 3200 10005 75 13 1 chr12 2161564 2163664 -142118825 - L1PA7 LINE L1 -2 6152 4034 737 248 14 37 chr12 2166892 2167106 -142115383 - MER3 DNA MER1_type 0 209 1 670 281 98 62 chr12 2168319 2168764 -142113725 - L2 LINE L2 -232 3040 2575 467 226 9 19 chr12 2169691 2169797 -142112692 - MER3 DNA MER1_type -104 105 1 263 299 0 13 chr12 2171690 2171767 -142110722 - MER117 DNA MER1_type 0 197 122 258 204 0 0 chr12 2171942 2171991 -142110498 - MLT1K LTR MaLR -15 573 525 717 229 76 88 chr12 2172991 2173524 -142108965 - MLT1G LTR MaLR -2 588 1 186 119 143 24 chr12 2173579 2173621 -142108868 - MIR3 SINE MIR -25 183 137 526 252 22 7 chr12 2174629 2174764 -142107725 + MER5A DNA MER1_type 19 155 -34 303 302 126 6 chr12 2175045 2175204 -142107285 - MER5B DNA MER1_type 0 178 1 2228 84 20 17 chr12 2175346 2175644 -142106845 - AluY SINE Alu -12 299 1 283 272 136 8 chr12 2175646 2175771 -142106718 - MIR3 SINE MIR -30 178 38 2060 127 0 7 chr12 2175961 2176266 -142106223 + AluSx SINE Alu 1 303 0 349 293 104 12 chr12 2176430 2176594 -142105895 - MIR SINE MIR -6 202 22 551 227 123 19 chr12 2177437 2177591 -142104898 + MIR SINE MIR 2 171 -91 236 313 10 31 chr12 2177725 2177821 -142104668 + MIR SINE MIR 20 113 -149 188 254 18 36 chr12 2177937 2177992 -142104497 + L3 LINE CR1 1517 1570 -7 627 240 137 11 chr12 2178034 2178209 -142104280 + MIR3 SINE MIR 9 205 -3 369 0 0 0 chr12 2179631 2179672 -142102817 + (TG)n Simple_repeat Simple_repeat 2 42 0 510 252 8 0 chr12 2181185 2181316 -142101173 + L1MB7 LINE L1 6041 6172 -12 199 332 37 32 chr12 2181577 2181767 -142100722 + L2 LINE L2 2074 2264 -1050 220 225 117 92 chr12 2181871 2181991 -142100498 - MER5A DNA MER1_type -66 123 1 288 260 89 107 chr12 2182002 2182069 -142100420 + MIR SINE MIR 21 88 -174 2392 73 0 0 chr12 2182069 2182372 -142100117 + AluY SINE Alu 1 303 -8 288 260 89 107 chr12 2182372 2182473 -142100016 + MIR SINE MIR 88 186 -76 740 186 44 50 chr12 2182773 2182939 -142099550 + MIR SINE MIR 98 262 0 369 0 0 0 chr12 2183084 2183125 -142099364 + (TG)n Simple_repeat Simple_repeat 1 41 0 180 337 46 62 chr12 2183746 2184250 -142098239 - L2 LINE L2 -893 2421 1926 485 283 96 0 chr12 2184551 2184717 -142097772 - MER5A DNA MER1_type -2 187 6 303 280 43 0 chr12 2185716 2185809 -142096680 + MIR SINE MIR 134 230 -32 205 290 14 14 chr12 2186657 2186726 -142095763 - MER5B DNA MER1_type -67 111 43 250 158 0 0 chr12 2186772 2186810 -142095679 + MIR SINE MIR 79 116 -146 421 270 10 0 chr12 2186956 2187056 -142095433 + L2 LINE L2 3208 3308 -5 329 288 128 40 chr12 2187089 2187214 -142095275 - MIR3 SINE MIR -58 150 15 2349 63 0 3 chr12 2187385 2187685 -142094804 - AluY SINE Alu -12 299 1 422 330 73 18 chr12 2187757 2187975 -142094514 - MIR SINE MIR -28 234 5 272 229 73 31 chr12 2189065 2189161 -142093328 - MIR SINE MIR 0 262 163 195 42 0 0 chr12 2189164 2189188 -142093301 + (T)n Simple_repeat Simple_repeat 1 24 0 43918 30 23 1 chr12 2189278 2195296 -142087193 - L1PA2 LINE L1 -1 6154 2 654 235 29 0 chr12 2195315 2195451 -142087038 - MIR SINE MIR -117 145 6 185 167 100 100 chr12 2195805 2195865 -142086624 + MER5B DNA MER1_type 63 122 -56 471 299 61 18 chr12 2196164 2196357 -142086132 + MIR SINE MIR 11 211 -51 702 203 101 0 chr12 2196402 2196540 -142085949 + AluJo SINE Alu 125 276 -36 1355 76 5 5 chr12 2197651 2197835 -142084654 + MSTB1 LTR MaLR 249 432 0 1696 206 28 30 chr12 2197990 2198388 -142084101 - MLT1C LTR MaLR 0 467 71 294 246 0 0 chr12 2199331 2199388 -142083101 + L2 LINE L2 3255 3311 -2 413 290 0 22 chr12 2199434 2199572 -142082917 + MIR3 SINE MIR 1 135 -73 443 285 112 75 chr12 2199681 2200173 -142082316 - L2 LINE L2 0 3313 2804 6437 137 37 44 chr12 2201179 2201950 -142080539 + Tigger3b DNA MER2_type 1 763 -2265 2151 86 27 0 chr12 2201950 2202242 -142080247 - AluSx SINE Alu -12 300 1 6437 137 37 44 chr12 2202242 2202708 -142079781 + Tigger3b DNA MER2_type 763 1230 -1 395 232 196 9 chr12 2203406 2203518 -142078971 - L2 LINE L2 -1 3312 3180 272 274 0 0 chr12 2204542 2204604 -142077885 - L2 LINE L2 0 3272 3211 396 278 61 28 chr12 2204862 2205042 -142077447 + MIR SINE MIR 77 262 0 190 246 53 18 chr12 2205275 2205332 -142077157 - L2 LINE L2 -243 3070 3012 1406 161 19 8 chr12 2207526 2207786 -142074703 - AluJo SINE Alu -16 296 34 368 229 0 62 chr12 2210142 2210238 -142072251 - MIR3 SINE MIR -11 197 108 999 246 103 14 chr12 2211175 2211456 -142071033 + MLT1J LTR MaLR 1 306 -205 23 33 0 0 chr12 2211653 2211683 -142070806 + AT_rich Low_complexity Low_complexity 1 30 0 1730 102 57 3 chr12 2212279 2212562 -142069927 - L1MB3 LINE L1 0 6183 5886 204 339 0 0 chr12 2214256 2214321 -142068168 - MIR3 SINE MIR -34 174 110 * 212 308 19 75 chr12 2214320 2214427 -142068062 + MIR3 SINE MIR 81 181 -27 299 324 84 20 chr12 2214967 2215266 -142067223 + L1ME3A LINE L1 5817 6134 -36 332 226 32 0 chr12 2215348 2215441 -142067048 + HAL1 LINE L1 45 140 -2367 2719 261 115 34 chr12 2215887 2216085 -142066404 + HAL1 LINE L1 154 335 -2172 891 141 49 5 chr12 2216085 2216269 -142066220 + L1MA8 LINE L1 6098 6289 -2 2719 261 115 34 chr12 2216269 2217271 -142065218 + HAL1 LINE L1 335 1451 -1056 1288 148 14 5 chr12 2217271 2217487 -142065002 + AluJb SINE Alu 1 218 -94 1141 217 84 49 chr12 2217501 2217847 -142064642 + HAL1 LINE L1 1427 1784 -723 658 248 159 25 chr12 2217871 2218185 -142064304 + HAL1 LINE L1 2129 2484 -23 1740 129 11 11 chr12 2218186 2218466 -142064023 + AluJb SINE Alu 1 280 -32 207 0 0 0 chr12 2218466 2218489 -142064000 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2216 99 6 6 chr12 2218565 2218878 -142063611 - AluSq SINE Alu 0 313 1 207 245 0 19 chr12 2218921 2218974 -142063515 - L2 LINE L2 0 3313 3262 238 188 146 0 chr12 2219261 2219309 -142063180 + L2 LINE L2 3213 3267 -5 2156 111 0 0 chr12 2219788 2220094 -142062395 - AluSg SINE Alu -4 306 1 217 132 0 26 chr12 2221017 2221055 -142061434 + MIR SINE MIR 117 153 -109 1640 95 4 22 chr12 2221964 2222196 -142060293 + AluSp SINE Alu 74 301 -12 447 326 18 2 chr12 2222251 2222434 -142060055 - MIR SINE MIR -63 145 5 473 217 217 31 chr12 2223293 2223454 -142059035 + MIR3 SINE MIR 3 193 -15 551 301 119 4 chr12 2223631 2223857 -142058632 + MIR SINE MIR 3 254 -8 186 268 66 54 chr12 2224426 2224559 -142057930 + MIR SINE MIR 13 148 -60 204 40 0 0 chr12 2224702 2224727 -142057762 + (TG)n Simple_repeat Simple_repeat 2 26 0 521 232 18 61 chr12 2225559 2225723 -142056766 + MIR SINE MIR 105 261 -1 181 324 301 4 chr12 2226033 2226292 -142056197 - L2 LINE L2 -1 3271 2936 1952 265 84 23 chr12 2226293 2226991 -142055498 - L1ME LINE L1 -5327 743 3 240 360 98 12 chr12 2227104 2227268 -142055221 - L2 LINE L2 -480 2834 2657 319 222 14 14 chr12 2227301 2227373 -142055116 + MIR3 SINE MIR 121 192 -16 307 302 16 62 chr12 2228964 2229093 -142053396 + L2 LINE L2 3132 3254 -18 211 314 29 0 chr12 2230474 2230544 -142051945 + MIR SINE MIR 63 134 -128 497 333 144 17 chr12 2230576 2230924 -142051565 - L2 LINE L2 -1 3312 2921 320 253 50 30 chr12 2231021 2231120 -142051369 + MLT1J1 LTR MaLR 346 446 0 402 217 12 0 chr12 2232708 2232791 -142049698 + MIR SINE MIR 92 175 -87 291 284 57 0 chr12 2232838 2232926 -142049563 + MIR SINE MIR 79 171 -91 1618 242 48 95 chr12 2233391 2233594 -142048895 - L1MC5 LINE L1 -27 7934 7723 2550 145 9 53 chr12 2233594 2234048 -142048441 - Tigger2a DNA MER2_type 0 434 1 1618 242 48 95 chr12 2234048 2234834 -142047655 - L1MC5 LINE L1 -238 7723 6991 777 258 146 59 chr12 2234852 2235466 -142047023 - L2 LINE L2 0 3313 2645 620 143 18 42 chr12 2236435 2236603 -142045886 + CT-rich Low_complexity Low_complexity 2 165 0 2043 130 30 0 chr12 2236611 2236911 -142045578 - AluSx SINE Alu -3 309 1 1966 156 0 0 chr12 2237754 2238059 -142044430 + AluSx SINE Alu 1 305 0 254 258 30 0 chr12 2238410 2238476 -142044013 - L3 LINE CR1 -2 1575 1508 318 320 37 29 chr12 2239623 2239865 -142042624 + MIR3 SINE MIR 1 246 -16 232 349 132 13 chr12 2239898 2240050 -142042439 - L3 LINE CR1 -584 993 824 181 286 5 0 chr12 2240161 2240229 -142042260 + MIR SINE MIR 74 143 -65 527 312 168 71 chr12 2240334 2241080 -142041409 + L3 LINE CR1 709 1526 -51 216 0 0 0 chr12 2241106 2241130 -142041359 + (A)n Simple_repeat Simple_repeat 1 24 0 233 173 30 29 chr12 2241922 2241989 -142040500 + MIR SINE MIR 103 167 -41 922 141 0 7 chr12 2242012 2242147 -142040342 - AluJo SINE Alu -178 134 1 194 271 0 0 chr12 2242174 2242222 -142040267 + MIR SINE MIR 183 230 -32 282 290 70 37 chr12 2242359 2242498 -142039991 - MER5B DNA MER1_type -30 159 6 415 270 51 15 chr12 2243599 2243736 -142038753 - L2 LINE L2 0 3313 3172 1833 161 37 45 chr12 2244367 2244747 -142037742 + MLT1B LTR MaLR 4 380 -10 612 279 132 5 chr12 2245663 2245882 -142036607 - MIR SINE MIR -13 249 3 341 309 71 42 chr12 2246095 2246263 -142036226 - MIR SINE MIR -44 218 46 2602 62 0 3 chr12 2247785 2248093 -142034396 + AluY SINE Alu 1 307 -4 284 348 127 17 chr12 2249483 2249664 -142032825 - L2 LINE L2 0 3272 3072 538 292 125 24 chr12 2249683 2250060 -142032429 - MLT1J2 LTR MaLR -23 427 13 363 278 0 0 chr12 2250488 2250664 -142031825 + (CA)n Simple_repeat Simple_repeat 2 177 0 411 272 0 0 chr12 2250695 2250875 -142031614 + (CA)n Simple_repeat Simple_repeat 1 180 0 498 256 0 0 chr12 2250889 2251069 -142031420 + (CA)n Simple_repeat Simple_repeat 1 180 0 270 340 38 0 chr12 2251581 2251687 -142030802 + MIR SINE MIR 120 229 -33 2038 154 0 0 chr12 2252147 2252452 -142030037 + AluJb SINE Alu 1 305 -7 333 282 194 31 chr12 2252646 2252940 -142029549 - L3 LINE CR1 -58 1519 1178 700 172 7 17 chr12 2253079 2253370 -142029119 + CT-rich Low_complexity Low_complexity 1 288 0 182 263 0 0 chr12 2253404 2253442 -142029047 - L3 LINE CR1 -613 964 927 337 262 149 42 chr12 2254304 2254472 -142028017 + MIR3 SINE MIR 23 208 0 277 279 38 77 chr12 2254788 2254971 -142027518 - MIR3 SINE MIR -7 201 26 359 272 29 110 chr12 2258065 2258213 -142024276 + L2 LINE L2 2826 2944 -369 2560 153 23 16 chr12 2258213 2258644 -142023845 + Tigger2a DNA MER2_type 1 434 0 359 272 29 110 chr12 2258644 2258767 -142023722 + L2 LINE L2 2944 3075 -238 467 234 18 0 chr12 2258770 2258881 -142023608 + AluJb SINE Alu 196 308 -4 472 192 242 28 chr12 2258926 2259108 -142023381 + L2 LINE L2 3093 3313 0 676 278 90 45 chr12 2259258 2259312 -142023177 - L2 LINE L2 -6 3307 3257 1230 126 36 50 chr12 2259312 2259534 -142022955 + MER20 DNA MER1_type 1 219 0 676 278 90 45 chr12 2259534 2259835 -142022654 - L2 LINE L2 -56 3257 2936 235 227 247 0 chr12 2260613 2260710 -142021779 - MLT1L LTR MaLR 0 615 495 264 287 282 5 chr12 2260739 2260941 -142021548 - MLT1L LTR MaLR -340 275 18 285 325 49 8 chr12 2261136 2261259 -142021230 - MIR3 SINE MIR -5 203 76 2508 13 0 0 chr12 2263024 2263327 -142019162 - L1PA2 LINE L1 -599 5556 5254 5238 22 10 0 chr12 2263329 2263925 -142018564 + L1PA2 LINE L1 5554 6155 0 287 297 124 22 chr12 2264371 2264556 -142017933 + L2 LINE L2 3008 3211 -102 1658 176 47 9 chr12 2264677 2265018 -142017471 - MLT1A1 LTR MaLR -2 363 10 536 328 33 6 chr12 2265380 2265560 -142016929 + MIR SINE MIR 20 204 -58 1952 146 0 35 chr12 2266502 2266818 -142015671 + AluJo SINE Alu 1 305 -7 198 349 121 0 chr12 2267100 2267166 -142015323 - L2 LINE L2 -10 3262 3189 225 196 22 0 chr12 2268960 2269006 -142013483 + GA-rich Low_complexity Low_complexity 2 48 0 2455 78 0 7 chr12 2270689 2270995 -142011494 - AluSq SINE Alu -9 304 1 349 376 8 0 chr12 2271696 2271813 -142010676 - L2 LINE L2 -19 3253 3136 181 244 12 85 chr12 2273123 2273205 -142009284 + MIR3 SINE MIR 95 170 -38 493 309 90 5 chr12 2273239 2273427 -142009062 + MIR SINE MIR 59 262 0 410 278 56 16 chr12 2273413 2273539 -142008950 - MIR SINE MIR -47 215 85 * 659 199 33 50 chr12 2275574 2275755 -142006734 + MER5B DNA MER1_type 1 178 0 2990 145 4 16 chr12 2275915 2276425 -142006064 + L1MB3 LINE L1 5679 6182 -1 250 240 125 42 chr12 2276723 2276819 -142005670 + MIR SINE MIR 31 134 -128 242 282 115 58 chr12 2276988 2277162 -142005327 + MIR3 SINE MIR 18 201 -7 306 276 114 16 chr12 2279227 2279350 -142003139 + MIR SINE MIR 109 243 -19 702 282 181 25 chr12 2279726 2280400 -142002089 - L2 LINE L2 0 3313 2539 876 283 62 58 chr12 2280517 2281118 -142001371 + L1ME4a LINE L1 5492 6094 -27 396 236 30 125 chr12 2281264 2281472 -142001017 + MIR3 SINE MIR 5 191 -71 211 306 27 72 chr12 2282556 2282667 -141999822 - MIR SINE MIR -149 113 8 200 219 0 0 chr12 2282821 2282862 -141999627 + L2 LINE L2 3271 3311 -2 221 266 0 47 chr12 2283273 2283337 -141999152 + L2 LINE L2 2212 2272 -1042 272 323 68 38 chr12 2283976 2284109 -141998380 + MIR3 SINE MIR 5 141 -67 435 38 0 0 chr12 2285095 2285148 -141997341 + (CA)n Simple_repeat Simple_repeat 2 54 0 450 173 37 105 chr12 2285250 2285425 -141997064 - MIR SINE MIR -62 146 35 359 291 212 20 chr12 2286314 2286517 -141995972 + MIR SINE MIR 15 256 -6 455 257 53 23 chr12 2286697 2286868 -141995621 + MER104 DNA MER2_type 5 180 0 503 258 230 10 chr12 2287213 2287422 -141995067 - MIR SINE MIR -6 256 2 221 294 110 32 chr12 2288058 2288228 -141994261 + MIR3 SINE MIR 6 187 -61 965 286 139 11 chr12 2288379 2288958 -141993531 - L2 LINE L2 -2 3311 2658 565 308 88 9 chr12 2289730 2289957 -141992532 - MIR SINE MIR 0 262 18 252 349 54 24 chr12 2290104 2290270 -141992219 + L2 LINE L2 3127 3297 -16 203 263 58 88 chr12 2290408 2290545 -141991944 - MIR SINE MIR -46 216 84 4270 199 33 60 chr12 2290905 2292078 -141990411 - L1MC4a LINE L1 -1 7807 6666 311 342 88 0 chr12 2292301 2292415 -141990074 - L2 LINE L2 0 3313 3190 617 261 113 15 chr12 2294848 2295043 -141987446 - MIR SINE MIR -21 241 28 471 315 146 0 chr12 2295142 2295307 -141987182 - MER5A DNA MER1_type 0 189 1 529 293 72 22 chr12 2297886 2298067 -141984422 + MIR SINE MIR 73 262 0 379 290 98 36 chr12 2300156 2300349 -141982140 - MIR SINE MIR -7 255 51 334 234 56 37 chr12 2300751 2300858 -141981631 + L2 LINE L2 3205 3313 0 364 284 147 10 chr12 2301339 2301536 -141980953 - Charlie8 DNA MER1_type -2128 289 66 208 189 27 0 chr12 2301720 2301757 -141980732 + MIR SINE MIR 117 154 -108 493 274 11 45 chr12 2301789 2301968 -141980521 - MIR SINE MIR -29 233 61 384 222 267 7 chr12 2302531 2302666 -141979823 + MIR SINE MIR 6 175 -87 199 162 0 0 chr12 2304440 2304477 -141978012 - MIR SINE MIR -118 144 108 926 218 88 70 chr12 2304592 2304923 -141977566 + MER46C DNA MER2_type 1 337 -1 511 335 138 0 chr12 2305457 2305681 -141976808 - MIR SINE MIR 0 262 8 662 291 69 5 chr12 2307769 2307972 -141974517 + MIR SINE MIR 47 262 0 825 293 16 8 chr12 2308049 2308238 -141974251 + MIR SINE MIR 8 201 -61 1059 221 8 55 chr12 2308238 2308473 -141974016 + MER58A DNA MER1_type 1 224 0 825 293 16 8 chr12 2308473 2308536 -141973953 + MIR SINE MIR 201 262 0 182 310 60 80 chr12 2308569 2308669 -141973820 - MIR SINE MIR -77 185 88 907 99 0 0 chr12 2308740 2308861 -141973628 - AluY SINE Alu -7 304 184 1921 54 0 0 chr12 2308861 2309082 -141973407 - AluY SINE Alu -90 221 1 379 292 108 0 chr12 2309687 2309807 -141972682 - L3b LINE CR1 -159 1424 1292 209 229 42 0 chr12 2310835 2310883 -141971606 + MIR SINE MIR 98 147 -61 218 239 292 9 chr12 2312574 2312687 -141969802 + MIR SINE MIR 112 256 -6 203 309 117 11 chr12 2312703 2312797 -141969692 - L3b LINE CR1 -157 1426 1323 199 269 154 13 chr12 2313719 2313797 -141968692 - MER5A DNA MER1_type -98 91 3 309 237 105 18 chr12 2314043 2314157 -141968332 + MIR SINE MIR 25 148 -114 248 318 65 0 chr12 2314684 2314791 -141967698 - L2 LINE L2 -6 3307 3194 399 346 15 8 chr12 2315113 2315246 -141967243 + MER5A DNA MER1_type 51 184 -5 209 264 194 39 chr12 2315710 2315839 -141966650 - MER5B DNA MER1_type -26 152 4 693 267 96 23 chr12 2315998 2316301 -141966188 - MLT1J1 LTR MaLR -113 333 9 2278 111 49 9 chr12 2316310 2316634 -141965855 - MER1B DNA MER1_type 0 337 1 271 167 117 0 chr12 2316847 2316907 -141965582 + MER116 DNA Mariner 1 67 -13 228 350 50 21 chr12 2317498 2317638 -141964851 - MIR SINE MIR -111 151 8 695 174 84 62 chr12 2318110 2318288 -141964201 + MER5A DNA MER1_type 1 182 -7 1139 169 0 11 chr12 2318711 2318895 -141963594 + AluJo SINE Alu 86 267 -45 1689 181 23 19 chr12 2319169 2319479 -141963010 + AluJo SINE Alu 1 311 -1 620 287 72 51 chr12 2319602 2319777 -141962712 + MIR SINE MIR 7 190 -72 1777 217 112 8 chr12 2319777 2319923 -141962566 - Charlie1b DNA MER1_type -2238 523 393 2496 83 0 6 chr12 2319923 2320236 -141962253 + AluY SINE Alu 1 311 0 1777 217 112 8 chr12 2320236 2320563 -141961926 - Charlie1b DNA MER1_type -2368 393 1 620 287 72 51 chr12 2320563 2320624 -141961865 + MIR SINE MIR 190 248 -14 744 296 72 41 chr12 2321817 2322236 -141960253 - L2 LINE L2 -4 3309 2878 * 1457 251 89 69 chr12 2322204 2322870 -141959619 - L2 LINE L2 -345 2969 2291 518 277 0 0 chr12 2323353 2323465 -141959024 - MIR3 SINE MIR -6 202 91 207 298 43 21 chr12 2324755 2324849 -141957640 + MIR3 SINE MIR 109 204 -4 240 287 82 25 chr12 2325595 2325717 -141956772 + MIR SINE MIR 91 219 -43 283 321 30 15 chr12 2325766 2325897 -141956592 + MIR SINE MIR 20 152 -110 323 310 9 35 chr12 2326050 2326163 -141956326 + L2 LINE L2 3150 3259 -13 340 253 14 42 chr12 2326251 2326381 -141956108 - MIR SINE MIR -21 187 63 225 178 74 28 chr12 2326527 2326602 -141955887 - MIR3 SINE MIR -54 154 77 795 288 77 29 chr12 2328635 2329114 -141953375 - LTR33 LTR ERVL -4 517 16 640 259 43 82 chr12 2330433 2330592 -141951897 + MIR SINE MIR 40 189 -73 1993 127 21 0 chr12 2330592 2330876 -141951613 + AluJo SINE Alu 1 290 -22 640 259 43 82 chr12 2330876 2330948 -141951541 + MIR SINE MIR 189 262 0 1179 167 5 28 chr12 2332038 2332253 -141950236 + MER2 DNA MER2_type 1 210 -135 24 53 0 0 chr12 2332280 2332318 -141950171 + AT_rich Low_complexity Low_complexity 1 38 0 471 278 35 58 chr12 2333563 2333736 -141948753 - MIR SINE MIR -74 188 20 243 150 0 0 chr12 2334964 2335004 -141947485 - MER2 DNA MER2_type -225 120 81 32 43 0 0 chr12 2335017 2335063 -141947426 + AT_rich Low_complexity Low_complexity 1 46 0 239 307 53 26 chr12 2335121 2335235 -141947254 - MIR SINE MIR -64 144 28 207 277 128 64 chr12 2336052 2336193 -141946296 - MIR SINE MIR -2 260 111 615 75 0 0 chr12 2336309 2336403 -141946086 + (CA)n Simple_repeat Simple_repeat 2 95 0 3235 215 54 23 chr12 2337234 2338172 -141944317 - L1ME1 LINE L1 -6 6229 5265 1087 192 19 27 chr12 2338177 2338437 -141944052 - L1ME1 LINE L1 -1276 4939 4682 651 254 10 24 chr12 2338436 2338641 -141943848 - L1ME1 LINE L1 -3651 2564 2363 * 25 31 0 0 chr12 2338691 2338723 -141943766 + AT_rich Low_complexity Low_complexity 1 32 0 1151 145 9 54 chr12 2338728 2338949 -141943540 - MER2 DNA MER2_type -134 211 1 514 243 87 0 chr12 2338950 2339112 -141943377 - L1ME1 LINE L1 -3850 2365 2213 207 267 28 57 chr12 2339337 2339513 -141942976 + (CTTTG)n Simple_repeat Simple_repeat 2 172 0 3035 254 60 19 chr12 2339744 2339942 -141942547 - L1ME1 LINE L1 -4150 2246 2058 1337 42 6 0 chr12 2339942 2340108 -141942381 - L1PA4 LINE L1 -6 6149 5983 3035 254 60 19 chr12 2340108 2341008 -141941481 - L1ME1 LINE L1 -4338 2058 1103 617 253 60 76 chr12 2341795 2342044 -141940445 - MLT1L LTR MaLR -125 490 246 337 301 184 7 chr12 2342045 2342181 -141940308 - MER5A DNA MER1_type -1 188 29 231 270 56 0 chr12 2342200 2342289 -141940200 - MLT1J LTR MaLR -317 194 101 294 256 0 39 chr12 2342526 2342604 -141939885 + L2 LINE L2 3193 3267 -5 335 227 21 62 chr12 2342661 2342758 -141939731 - MER5A DNA MER1_type -85 104 12 591 236 7 21 chr12 2344232 2344376 -141938113 - MER63 DNA MER1_type -294 768 1 186 176 194 46 chr12 2345593 2345701 -141936788 - L2 LINE L2 -38 3234 3111 283 288 0 0 chr12 2346568 2346641 -141935848 - MER5B DNA MER1_type -1 177 105 965 185 46 0 chr12 2346661 2346834 -141935655 - MER5A DNA MER1_type -6 183 3 382 311 0 0 chr12 2346847 2346937 -141935552 + MER5B DNA MER1_type 88 177 -1 221 288 51 0 chr12 2346967 2347026 -141935463 - L2 LINE L2 -6 3307 3246 473 239 51 36 chr12 2348518 2348656 -141933833 - L2 LINE L2 0 3313 3174 526 328 81 6 chr12 2348857 2349031 -141933458 - MIR3 SINE MIR -4 204 18 502 306 117 5 chr12 2349944 2350166 -141932323 + MIR SINE MIR 16 262 0 241 395 47 8 chr12 2351062 2351191 -141931298 - L2 LINE L2 -6 3266 3133 400 285 32 16 chr12 2351442 2351565 -141930924 + MIR SINE MIR 4 128 -134 337 270 0 11 chr12 2352167 2352256 -141930233 + L3b LINE CR1 1302 1389 -194 1528 121 36 5 chr12 2352433 2352656 -141929833 - MER30 DNA MER1_type 0 230 1 253 219 134 37 chr12 2352752 2352834 -141929655 + L2 LINE L2 3222 3311 -2 250 309 104 83 chr12 2352949 2353383 -141929106 - L2 LINE L2 0 3272 2830 239 316 164 29 chr12 2354304 2354548 -141927941 + L2 LINE L2 2994 3270 -2 354 326 92 32 chr12 2354617 2354855 -141927634 - MIR SINE MIR 0 262 2 194 282 118 0 chr12 2355486 2355571 -141926918 + L2 LINE L2 2476 2570 -744 278 287 110 7 chr12 2357008 2357144 -141925345 + MIR SINE MIR 1 150 -112 2275 108 0 0 chr12 2357284 2357571 -141924918 - AluSc SINE Alu -22 287 1 184 382 11 0 chr12 2357704 2357793 -141924696 + MIR SINE MIR 45 134 -74 329 255 38 125 chr12 2358132 2358316 -141924173 - MER5B DNA MER1_type -10 168 1 318 269 38 108 chr12 2358498 2358684 -141923805 - MER5A DNA MER1_type 0 189 17 621 270 113 0 chr12 2358775 2358934 -141923555 + MIR SINE MIR 69 245 -17 1872 147 3 33 chr12 2359308 2359614 -141922875 + AluJb SINE Alu 1 297 -15 296 118 29 59 chr12 2360511 2360579 -141921910 - MER103 DNA DNA -54 112 47 1127 189 102 81 chr12 2362179 2362458 -141920031 - MLT1B LTR MaLR 0 390 99 804 160 8 0 chr12 2362458 2362589 -141919900 + FLAM_C SINE Alu 1 132 -1 1127 189 102 81 chr12 2362589 2362690 -141919799 - MLT1B LTR MaLR -291 99 2 472 298 33 22 chr12 2364199 2364380 -141918109 - MIR3 SINE MIR -6 202 20 1694 186 4 0 chr12 2364554 2364829 -141917660 + AluJb SINE Alu 19 294 -18 752 256 128 9 chr12 2364877 2365088 -141917401 - MIR SINE MIR -11 251 16 318 258 0 21 chr12 2365676 2365769 -141916720 + MER103 DNA DNA 8 98 -68 494 235 27 54 chr12 2366310 2366459 -141916030 - MIR3 SINE MIR -48 160 16 188 305 0 34 chr12 2366516 2366575 -141915914 - MER5A DNA MER1_type -3 186 130 457 217 12 121 chr12 2366878 2367044 -141915445 - MER5A DNA MER1_type -41 148 1 1860 157 61 5 chr12 2367232 2367641 -141914848 - L1MA9 LINE L1 -844 5302 4670 4740 148 86 13 chr12 2367641 2368452 -141914037 + L1MA9 LINE L1 5303 6194 -118 321 26 0 0 chr12 2368452 2368490 -141913999 + (CA)n Simple_repeat Simple_repeat 1 38 0 4740 148 86 13 chr12 2368490 2368619 -141913870 + L1MA9 LINE L1 6194 6312 0 215 292 0 0 chr12 2368752 2368800 -141913689 - L2 LINE L2 -84 3188 3141 421 250 225 25 chr12 2369091 2369251 -141913238 - MIR SINE MIR -50 212 21 195 42 0 0 chr12 2369327 2369351 -141913138 + (TA)n Simple_repeat Simple_repeat 2 25 0 791 128 0 15 chr12 2370791 2370924 -141911565 + L1MB3 LINE L1 6052 6182 -1 972 323 177 21 chr12 2371407 2372165 -141910324 - L3 LINE CR1 -231 1346 471 1217 235 128 35 chr12 2373334 2373882 -141908607 - L1ME3A LINE L1 -11 6159 5561 655 248 80 36 chr12 2375154 2375395 -141907094 + MIR SINE MIR 12 262 0 194 211 39 39 chr12 2375870 2375922 -141906567 + MIR SINE MIR 181 232 -30 3226 196 39 20 chr12 2375926 2376641 -141905848 + L1MB2 LINE L1 5441 6169 -2 182 284 222 0 chr12 2377486 2377567 -141904922 - L2 LINE L2 -30 3242 3144 246 244 0 44 chr12 2377711 2377801 -141904688 + GA-rich Low_complexity Low_complexity 2 87 0 215 213 19 28 chr12 2377824 2377932 -141904557 + GA-rich Low_complexity Low_complexity 4 110 0 348 204 153 10 chr12 2380314 2380412 -141902077 + MIR SINE MIR 88 199 -63 761 242 175 47 chr12 2380457 2380800 -141901689 - L2 LINE L2 -9 3304 2918 258 234 43 64 chr12 2381483 2381577 -141900912 - MIR SINE MIR -81 181 90 397 297 0 25 chr12 2381719 2381876 -141900613 + MIR SINE MIR 38 256 -6 204 274 16 16 chr12 2382049 2382111 -141900378 + CT-rich Low_complexity Low_complexity 4 65 0 21 0 0 0 chr12 2382245 2382266 -141900223 + AT_rich Low_complexity Low_complexity 1 21 0 427 222 75 96 chr12 2383837 2384066 -141898423 - MIR SINE MIR -17 245 26 402 281 244 6 chr12 2384481 2384645 -141897844 + MIR SINE MIR 54 256 -6 368 296 19 56 chr12 2385267 2385429 -141897060 - MER5A DNA MER1_type -31 158 3 190 238 0 24 chr12 2385790 2385832 -141896657 - MIR3 SINE MIR -26 182 142 532 162 204 26 chr12 2385966 2386157 -141896332 + MLT1J LTR MaLR 229 453 -58 218 310 152 38 chr12 2386396 2386554 -141895935 + MIR3 SINE MIR 18 193 -15 208 329 26 13 chr12 2389275 2389351 -141893138 + MIR3 SINE MIR 83 159 -49 627 221 15 28 chr12 2389371 2389577 -141892912 - MIR SINE MIR 0 262 6 375 321 12 42 chr12 2389677 2389845 -141892644 + L1ME4a LINE L1 4857 5019 -1127 21 36 0 0 chr12 2390139 2390167 -141892322 + AT_rich Low_complexity Low_complexity 1 28 0 1059 255 134 34 chr12 2390208 2390655 -141891834 + L1MC4 LINE L1 6652 7143 -899 2042 173 49 117 chr12 2390657 2391334 -141891155 + L1MC4 LINE L1 7412 8042 0 332 283 134 5 chr12 2391458 2391828 -141890661 + L1ME4a LINE L1 5559 5997 -124 268 304 60 46 chr12 2392163 2392301 -141890188 - MIR SINE MIR -48 160 18 232 367 87 5 chr12 2392576 2392772 -141889717 + L3b LINE CR1 1276 1487 -96 225 244 27 20 chr12 2392819 2392906 -141889583 - MIR SINE MIR -78 130 94 183 218 164 0 chr12 2393249 2393304 -141889185 - L2 LINE L2 -9 3263 3200 660 232 0 0 chr12 2393498 2393623 -141888866 + FLAM_A SINE Alu 1 125 -8 388 305 40 13 chr12 2393629 2393780 -141888709 + MIR SINE MIR 53 207 -55 221 83 28 0 chr12 2395965 2396001 -141886488 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 193 286 176 55 chr12 2396613 2396812 -141885677 - MIR SINE MIR 0 262 40 3340 134 104 18 chr12 2398004 2398684 -141883805 - Tigger3(Golem) DNA MER2_type -1 3028 2290 570 191 29 0 chr12 2398681 2398786 -141883703 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 437 283 157 13 chr12 2398789 2399019 -141883470 - L1ME4a LINE L1 -24 6097 5835 300 305 34 17 chr12 2399228 2399403 -141883086 - L1ME4a LINE L1 -519 5602 5445 2515 57 3 3 chr12 2399650 2399948 -141882541 + AluY SINE Alu 1 298 -13 216 111 28 0 chr12 2401491 2401527 -141880962 + L2 LINE L2 3213 3249 -23 274 291 38 136 chr12 2401903 2402116 -141880373 - MIR SINE MIR -51 211 20 890 150 19 25 chr12 2402412 2402572 -141879917 + MER53 DNA DNA 24 182 -7 626 289 35 20 chr12 2404440 2404637 -141877852 - MIR SINE MIR -49 213 14 344 213 0 22 chr12 2405169 2405352 -141877137 + (TG)n Simple_repeat Simple_repeat 2 180 0 306 286 48 29 chr12 2407993 2408098 -141874391 - MIR3 SINE MIR -8 200 94 280 196 0 0 chr12 2408686 2408737 -141873752 + MIR SINE MIR 98 148 -114 191 138 0 0 chr12 2408758 2408787 -141873702 + L2 LINE L2 3211 3239 -33 592 279 135 5 chr12 2409246 2409461 -141873028 - MIR SINE MIR 0 262 20 358 284 203 31 chr12 2409778 2410000 -141872489 - L3 LINE CR1 -10 1567 1308 1127 129 5 55 chr12 2410065 2410282 -141872207 - MER20 DNA MER1_type -4 215 10 212 254 34 0 chr12 2412000 2412059 -141870430 - L2 LINE L2 -6 3307 3247 202 322 17 17 chr12 2412087 2412202 -141870287 - L2 LINE L2 -166 3106 2992 189 294 15 15 chr12 2414513 2414581 -141867908 + L2 LINE L2 2985 3052 -220 995 191 44 0 chr12 2414661 2414865 -141867624 + MER20 DNA MER1_type 4 216 -3 204 245 19 0 chr12 2415009 2415062 -141867427 + (AATTG)n Simple_repeat Simple_repeat 4 57 0 186 318 35 35 chr12 2415579 2415664 -141866825 + MIR3 SINE MIR 10 94 -114 492 240 19 0 chr12 2415806 2415910 -141866579 - MIR SINE MIR -115 147 42 2365 96 3 0 chr12 2416663 2416966 -141865523 + AluSq SINE Alu 1 304 -9 513 0 0 0 chr12 2417226 2417283 -141865206 + (TG)n Simple_repeat Simple_repeat 2 58 0 227 296 69 15 chr12 2417379 2417480 -141865009 - MIR SINE MIR -48 160 57 22 0 0 0 chr12 2418512 2418534 -141863955 + AT_rich Low_complexity Low_complexity 1 22 0 526 272 127 19 chr12 2418590 2418858 -141863631 + L3b LINE CR1 1109 1405 -178 362 277 9 27 chr12 2418998 2419110 -141863379 + MER5A DNA MER1_type 32 141 -48 197 69 52 35 chr12 2419124 2419182 -141863307 + (CACCC)n Simple_repeat Simple_repeat 1 59 0 409 296 9 0 chr12 2419612 2419720 -141862769 + MIR3 SINE MIR 87 195 -13 251 281 130 36 chr12 2420271 2420463 -141862026 + MLT1J LTR MaLR 42 251 -260 858 221 128 12 chr12 2420483 2420732 -141861757 + MLT1J LTR MaLR 226 503 -8 346 386 82 0 chr12 2420850 2421083 -141861406 + MIR SINE MIR 5 256 -6 187 94 0 62 chr12 2421121 2421153 -141861336 - L2 LINE L2 -43 3270 3241 844 339 200 3 chr12 2424055 2424619 -141857870 + L3 LINE CR1 56 730 -847 226 274 98 44 chr12 2424902 2425106 -141857383 + HAL1b LINE L1 517 731 -617 352 274 84 0 chr12 2425115 2425210 -141857279 + MIR SINE MIR 20 122 -140 28 95 0 0 chr12 2425285 2425369 -141857120 + AT_rich Low_complexity Low_complexity 1 84 0 1843 138 48 33 chr12 2425634 2425670 -141856819 - MER1B DNA MER1_type -2373 339 305 2022 145 119 38 chr12 2425670 2426064 -141856425 - MSTA LTR MaLR -2 426 1 1843 138 48 33 chr12 2426064 2426361 -141856128 - MER1B DNA MER1_type -2407 305 1 383 287 52 64 chr12 2426368 2426700 -141855789 + L1ME4a LINE L1 2459 2790 -3750 24 0 0 0 chr12 2426850 2426874 -141855615 + AT_rich Low_complexity Low_complexity 1 24 0 701 299 111 28 chr12 2427075 2427726 -141854763 + L1ME4a LINE L1 4312 5016 -1524 26 0 0 0 chr12 2427986 2428012 -141854477 + AT_rich Low_complexity Low_complexity 1 26 0 2330 90 0 17 chr12 2428378 2428678 -141853811 - AluSx SINE Alu -17 295 1 411 281 112 49 chr12 2428681 2428966 -141853523 + L1ME4a LINE L1 5352 5654 -886 798 254 146 36 chr12 2428972 2429554 -141852935 + L1ME4a LINE L1 5661 6306 -209 1020 287 151 37 chr12 2429618 2430186 -141852303 + L3 LINE CR1 741 1373 -204 918 177 21 52 chr12 2430394 2430586 -141851903 - MER5A DNA MER1_type 0 189 4 198 0 0 0 chr12 2430699 2430721 -141851768 + (T)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr12 2431568 2431590 -141850899 + AT_rich Low_complexity Low_complexity 1 22 0 194 353 37 37 chr12 2432066 2432202 -141850287 - L3b LINE CR1 -99 1484 1349 511 270 196 48 chr12 2432213 2432701 -141849788 - L2 LINE L2 -2 3311 2682 271 284 163 14 chr12 2432715 2432856 -141849633 - L3b LINE CR1 -243 1340 1179 481 248 20 46 chr12 2432914 2433067 -141849422 - MIR3 SINE MIR -11 197 49 292 277 88 36 chr12 2433982 2434119 -141848370 - MIR SINE MIR -75 187 44 214 297 126 34 chr12 2434337 2434512 -141847977 + MIR3 SINE MIR 9 199 -9 192 327 18 0 chr12 2435020 2435075 -141847414 + L2 LINE L2 3208 3263 -9 241 267 105 0 chr12 2435198 2435284 -141847205 + MIR SINE MIR 30 124 -138 224 288 15 0 chr12 2435398 2435464 -141847025 + L2 LINE L2 3186 3252 -20 404 291 37 38 chr12 2436592 2436800 -141845689 - MIR SINE MIR -37 225 16 735 229 24 6 chr12 2437483 2437653 -141844836 + MER97a DNA MER1_type? 5 177 -717 439 146 11 11 chr12 2437754 2437843 -141844646 + CT-rich Low_complexity Low_complexity 3 91 0 349 204 34 34 chr12 2438548 2438636 -141843853 - MIR3 SINE MIR -40 168 81 2846 0 0 0 chr12 2438724 2439019 -141843470 + AluYa5 SINE Alu 1 295 -16 272 273 23 55 chr12 2440069 2440197 -141842292 + MIR3 SINE MIR 72 195 -13 1582 219 73 20 chr12 2441036 2441489 -141841000 + Charlie4a DNA MER1_type 16 492 -16 301 272 136 39 chr12 2442004 2442107 -141840382 + MIR SINE MIR 33 145 -117 195 371 61 8 chr12 2442940 2443072 -141839417 - L3b LINE CR1 -4 1579 1441 307 344 48 32 chr12 2443180 2443369 -141839120 - L3b LINE CR1 -282 1301 1110 218 342 38 0 chr12 2444162 2444241 -141838248 - MIR3 SINE MIR -5 203 122 214 344 66 57 chr12 2444523 2444735 -141837754 + L2 LINE L2 2587 2800 -514 394 262 19 0 chr12 2444739 2444846 -141837643 - MER5B DNA MER1_type -2 176 68 1616 191 87 17 chr12 2444846 2445201 -141837288 - MER63 DNA MER1_type 0 1060 681 269 206 31 72 chr12 2445221 2445318 -141837171 + MER5B DNA MER1_type 84 176 -2 472 320 35 89 chr12 2445322 2445815 -141836674 + L2 LINE L2 2807 3272 0 190 342 45 27 chr12 2446061 2446172 -141836317 - L2 LINE L2 -37 3276 3164 2220 134 0 0 chr12 2446177 2446484 -141836005 + AluSx SINE Alu 1 307 -5 225 0 0 0 chr12 2446511 2446536 -141835953 + (GAAA)n Simple_repeat Simple_repeat 1 25 0 1669 145 51 77 chr12 2447030 2447444 -141835045 + L1MA9 LINE L1 5910 6312 0 190 306 0 0 chr12 2447676 2447738 -141834751 - L2 LINE L2 -956 2358 2297 702 314 108 20 chr12 2447817 2448416 -141834073 - L2 LINE L2 -964 2350 1699 275 231 0 46 chr12 2449245 2449310 -141833179 + MER94 DNA DNA 72 133 -1 217 312 130 0 chr12 2449377 2449454 -141833035 - L2 LINE L2 -17 3255 3169 412 354 118 22 chr12 2449873 2450500 -141831989 - L2 LINE L2 -624 2690 2004 193 273 161 12 chr12 2450525 2450686 -141831803 - L2 LINE L2 -1430 1884 1700 875 238 15 0 chr12 2450763 2450965 -141831524 - MER3 DNA MER1_type 0 209 5 267 167 0 0 chr12 2452427 2452469 -141830020 + MIR SINE MIR 59 100 -162 356 296 89 7 chr12 2452501 2452636 -141829853 + MIR SINE MIR 73 218 -44 1819 132 40 36 chr12 2452802 2453106 -141829383 + AluJo SINE Alu 5 309 -3 27 29 0 0 chr12 2453427 2453461 -141829028 + AT_rich Low_complexity Low_complexity 1 34 0 213 39 0 0 chr12 2453981 2454007 -141828482 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 955 119 8 0 chr12 2454012 2454138 -141828351 - AluJb SINE Alu -30 282 156 1872 149 0 11 chr12 2454184 2454459 -141828030 - AluSx SINE Alu -6 306 35 2240 214 104 69 chr12 2457983 2458781 -141823708 - LTR1B LTR ERV1 0 826 1 385 250 151 13 chr12 2459077 2459229 -141823260 - MIR SINE MIR -62 200 28 287 207 0 58 chr12 2460399 2460486 -141822003 - MIR SINE MIR -70 192 111 851 211 47 30 chr12 2460542 2460774 -141821715 + MIR SINE MIR 10 245 -17 402 241 11 0 chr12 2461471 2461572 -141820917 + MIR SINE MIR 53 153 -63 991 153 49 178 chr12 2464113 2464478 -141818011 - L1MD2 LINE L1 -8 6234 5917 7555 199 72 12 chr12 2464479 2466298 -141816191 - L1MDa LINE L1 -4085 2455 529 232 179 0 0 chr12 2466602 2466641 -141815848 - L1M2 LINE L1 -807 5484 5446 873 119 106 0 chr12 2466705 2466856 -141815633 - L1M2 LINE L1 -696 5484 5318 905 211 32 0 chr12 2466857 2467042 -141815447 + L1MDa LINE L1 336 526 -6014 2075 156 8 0 chr12 2467043 2467395 -141815094 + L1MB3 LINE L1 5822 6176 -7 1106 181 174 40 chr12 2467408 2467706 -141814783 - L1MDa LINE L1 -6196 344 7 305 308 82 32 chr12 2468180 2468345 -141814144 + MIR3 SINE MIR 5 179 -29 234 91 0 0 chr12 2469604 2469637 -141812852 + (TG)n Simple_repeat Simple_repeat 2 34 0 270 176 0 0 chr12 2469673 2469724 -141812765 + (TG)n Simple_repeat Simple_repeat 2 52 0 297 128 0 0 chr12 2469762 2469809 -141812680 + (TG)n Simple_repeat Simple_repeat 2 48 0 2297 102 3 0 chr12 2471996 2472291 -141810198 - AluSx SINE Alu -16 296 1 214 306 207 29 chr12 2472681 2472923 -141809566 + L2 LINE L2 2898 3182 -90 438 306 22 8 chr12 2473016 2473150 -141809339 + MIR SINE MIR 21 156 -106 523 207 41 0 chr12 2473618 2473739 -141808750 - MER103 DNA DNA -29 137 12 204 329 13 0 chr12 2475029 2475105 -141807384 + L2 LINE L2 2980 3056 -257 339 198 9 19 chr12 2475307 2475413 -141807076 + GA-rich Low_complexity Low_complexity 3 107 0 600 216 76 29 chr12 2475427 2475598 -141806891 - MIR SINE MIR -76 186 8 479 267 93 17 chr12 2475752 2475924 -141806565 - MIR SINE MIR -71 191 7 344 258 106 23 chr12 2476348 2476480 -141806009 + MER5B DNA MER1_type 1 143 -35 277 359 31 8 chr12 2476889 2477017 -141805472 - L2 LINE L2 -8 3264 3134 232 167 24 0 chr12 2477516 2477558 -141804931 + GA-rich Low_complexity Low_complexity 2 44 0 212 69 0 0 chr12 2478014 2478043 -141804446 - MIR SINE MIR -64 144 116 2037 141 79 25 chr12 2478085 2478489 -141804000 - MSTB LTR MaLR 0 426 1 414 0 0 0 chr12 2479077 2479123 -141803366 + (TG)n Simple_repeat Simple_repeat 2 47 0 2175 122 3 3 chr12 2480605 2480899 -141801590 + AluSc SINE Alu 1 294 -15 352 333 0 23 chr12 2481522 2481654 -141800835 - MER94 DNA DNA 0 134 6 346 248 55 9 chr12 2481668 2481777 -141800712 + MER117 DNA MER1_type 1 114 -83 278 311 0 0 chr12 2482049 2482123 -141800366 + L3 LINE CR1 1503 1576 -1 204 288 0 17 chr12 2482269 2482328 -141800161 - MIR SINE MIR -105 157 100 704 284 47 0 chr12 2482331 2482542 -141799947 + MIR SINE MIR 28 248 -14 181 271 51 0 chr12 2482614 2482673 -141799816 - MIR SINE MIR -175 87 26 278 309 39 34 chr12 2484103 2484307 -141798182 + L1ME4a LINE L1 5738 5942 -179 181 373 88 0 chr12 2485156 2485258 -141797231 - L2 LINE L2 -29 3284 3174 1601 222 61 57 chr12 2485530 2486007 -141796482 - MLT1H LTR MaLR 0 549 71 2086 113 11 3 chr12 2486576 2486894 -141795595 - AluSq SINE Alu 0 320 1 1817 188 93 19 chr12 2487877 2488307 -141794182 - MLT1C LTR MaLR 0 467 6 1834 144 38 49 chr12 2488893 2489261 -141793228 - MLT1A1 LTR MaLR -1 364 1 426 315 43 22 chr12 2490090 2490274 -141792215 - MER5A DNA MER1_type 0 189 2 * 503 314 0 13 chr12 2490274 2490426 -141792063 - MIR3 SINE MIR -47 161 12 351 286 112 0 chr12 2490577 2490675 -141791814 + MIR SINE MIR 133 241 -21 334 336 0 0 chr12 2491695 2491811 -141790678 + MIR3 SINE MIR 68 183 -25 375 212 0 0 chr12 2492428 2492513 -141789976 + (TCCA)n Simple_repeat Simple_repeat 4 88 0 286 297 85 48 chr12 2492632 2492797 -141789692 - L3 LINE CR1 -144 1433 1263 240 175 167 53 chr12 2492879 2492993 -141789496 - MER113 DNA MER1_type? -306 215 89 328 341 51 7 chr12 2493394 2493532 -141788957 - MIR SINE MIR -111 151 8 195 373 40 0 chr12 2493565 2493640 -141788849 - MIR3 SINE MIR -40 168 91 736 263 81 16 chr12 2495709 2495956 -141786533 - MLT1L LTR MaLR -4 611 349 388 284 39 8 chr12 2496429 2496556 -141785933 + MIR SINE MIR 58 188 -74 890 203 0 15 chr12 2496596 2496934 -141785555 + (TGG)n Simple_repeat Simple_repeat 1 332 0 719 209 0 11 chr12 2496964 2497146 -141785343 + (TGG)n Simple_repeat Simple_repeat 1 180 0 903 178 0 4 chr12 2497181 2497413 -141785076 + (TGG)n Simple_repeat Simple_repeat 1 231 0 195 366 0 0 chr12 2498159 2498230 -141784259 + L3 LINE CR1 1492 1562 -15 1875 159 26 0 chr12 2499084 2499430 -141783059 - L1MB4 LINE L1 0 6180 5826 358 291 23 0 chr12 2500978 2501064 -141781425 - MIR SINE MIR -64 144 57 231 330 10 10 chr12 2501364 2501461 -141781028 + GA-rich Low_complexity Low_complexity 3 99 0 1981 148 92 14 chr12 2501565 2501936 -141780553 - MSTB LTR MaLR 0 426 27 2137 136 32 70 chr12 2501958 2502398 -141780091 - MSTB-int LTR MaLR 0 1651 1229 222 317 37 0 chr12 2503255 2503337 -141779152 + MIR3 SINE MIR 121 205 -3 271 309 66 66 chr12 2503570 2503858 -141778631 + L2 LINE L2 2329 2616 -698 278 180 16 0 chr12 2504993 2505054 -141777435 + (TGGG)n Simple_repeat Simple_repeat 3 64 0 869 171 0 11 chr12 2505088 2505269 -141777220 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 243 257 40 0 chr12 2505269 2505343 -141777146 + (TGGG)n Simple_repeat Simple_repeat 1 77 0 762 211 0 0 chr12 2505343 2505523 -141776966 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 742 198 7 0 chr12 2505550 2505862 -141776627 + (TGGA)n Simple_repeat Simple_repeat 1 314 0 348 284 26 17 chr12 2506412 2506528 -141775961 - MER5A DNA MER1_type -14 175 59 1919 153 14 23 chr12 2508130 2508476 -141774013 - MER61A LTR ERV1 0 343 1 2759 36 0 0 chr12 2509247 2509553 -141772936 + AluY SINE Alu 1 306 -5 482 317 12 0 chr12 2512515 2512676 -141769813 + L2 LINE L2 110 272 -3042 435 270 101 14 chr12 2512703 2512851 -141769638 - MER58B DNA MER1_type -3 338 178 2177 259 108 132 chr12 2512894 2514262 -141768227 + L2 LINE L2 361 1760 -1553 1266 167 22 61 chr12 2514262 2514573 -141767916 + MER33 DNA MER1_type 26 324 0 2177 259 108 132 chr12 2514573 2515917 -141766572 + L2 LINE L2 1760 3313 0 218 323 32 0 chr12 2517819 2517881 -141764608 - MIR SINE MIR -125 83 20 1983 108 23 96 chr12 2517946 2518289 -141764200 - AluYb8 SINE Alu 0 318 1 496 277 18 119 chr12 2518936 2519362 -141763127 - MLT1I LTR MaLR -20 389 1 2754 275 66 73 chr12 2520020 2521583 -141760906 + L2 LINE L2 1752 3312 -1 2617 37 10 0 chr12 2521885 2522183 -141760306 - AluY SINE Alu -10 301 1 24 53 0 0 chr12 2522417 2522455 -141760034 + AT_rich Low_complexity Low_complexity 1 38 0 258 265 0 15 chr12 2522551 2522619 -141759870 - L2 LINE L2 -212 3060 2994 234 284 45 0 chr12 2523201 2523268 -141759221 - L2 LINE L2 -3 3310 3241 794 268 49 8 chr12 2523898 2524144 -141758345 + MIR SINE MIR 5 260 -2 222 345 30 18 chr12 2525636 2525804 -141756685 + MIR3 SINE MIR 24 193 -15 293 255 106 28 chr12 2526228 2526369 -141756120 - MIR3 SINE MIR -16 192 41 329 258 161 0 chr12 2527738 2527862 -141754627 + MIR3 SINE MIR 29 172 -36 192 40 0 0 chr12 2527973 2527998 -141754491 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 188 250 36 0 chr12 2528272 2528328 -141754161 - L2 LINE L2 -3 3269 3212 24 0 0 0 chr12 2528750 2528774 -141753715 + AT_rich Low_complexity Low_complexity 1 24 0 670 274 139 22 chr12 2529511 2529734 -141752755 + MIR SINE MIR 12 260 -2 1901 143 21 0 chr12 2529818 2530105 -141752384 - AluSx SINE Alu -18 294 2 228 219 27 0 chr12 2530115 2530188 -141752301 - L1MB7 LINE L1 -1 6183 6109 * 1574 270 50 79 chr12 2530178 2530658 -141751831 - L1ME LINE L1 -4331 1749 1257 2413 85 3 0 chr12 2530658 2530953 -141751536 - AluSg1 SINE Alu -13 296 1 1574 270 50 79 chr12 2530953 2531826 -141750663 - L1ME LINE L1 -4823 1257 531 337 286 29 0 chr12 2532588 2532693 -141749796 - MIR3 SINE MIR -45 163 56 2416 102 0 3 chr12 2533447 2533761 -141748728 + AluSq SINE Alu 1 313 0 2480 57 0 0 chr12 2533992 2534302 -141748187 + AluY SINE Alu 1 310 0 498 290 35 21 chr12 2534310 2534705 -141747784 + L1MEd LINE L1 691 1081 -5048 375 289 108 52 chr12 2534793 2534987 -141747502 + L1ME3A LINE L1 5959 6163 -7 235 217 60 36 chr12 2535134 2535217 -141747272 + MER117 DNA MER1_type 32 116 -81 461 335 138 13 chr12 2535283 2535507 -141746982 + MIR SINE MIR 11 262 0 543 295 33 0 chr12 2536464 2536674 -141745815 + LTR33 LTR ERVL 20 236 -285 254 279 29 0 chr12 2537355 2537423 -141745066 + MER5A DNA MER1_type 18 87 -102 599 332 101 8 chr12 2537537 2537775 -141744714 - MIR SINE MIR 0 262 3 929 212 0 6 chr12 2538189 2538354 -141744135 - FRAM SINE Alu -2 164 1 428 282 41 100 chr12 2539257 2539576 -141742913 + L2 LINE L2 2972 3271 -1 227 328 0 0 chr12 2539566 2539633 -141742856 + MIR3 SINE MIR 136 202 -6 * 587 316 35 4 chr12 2541333 2541561 -141740928 + MIR SINE MIR 9 243 -19 739 339 60 37 chr12 2541568 2541999 -141740490 - L3 LINE CR1 -16 1561 1121 327 333 91 0 chr12 2542245 2542377 -141740112 - L2 LINE L2 -541 2773 2630 286 238 0 112 chr12 2542431 2542574 -141739915 + L1ME4a LINE L1 5992 6118 -3 652 304 87 58 chr12 2542944 2543476 -141739013 - L2 LINE L2 -2 3270 2730 646 167 30 8 chr12 2544522 2544654 -141737835 - L1MB3 LINE L1 0 6183 6049 279 282 51 0 chr12 2544941 2545019 -141737470 + MIR SINE MIR 111 192 -70 237 65 0 0 chr12 2548071 2548102 -141734387 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 222 344 133 20 chr12 2548868 2549019 -141733470 - L3 LINE CR1 -1398 179 12 1827 203 54 14 chr12 2549923 2550367 -141732122 + L1ME1 LINE L1 5700 6161 -5 308 164 15 0 chr12 2550394 2550461 -141732028 + GA-rich Low_complexity Low_complexity 2 69 0 374 57 19 0 chr12 2550593 2550646 -141731843 + (GGA)n Simple_repeat Simple_repeat 2 55 0 315 0 0 0 chr12 2550937 2550972 -141731517 + (TC)n Simple_repeat Simple_repeat 2 36 0 978 79 29 14 chr12 2552986 2553126 -141729363 - L1PA8 LINE L1 0 6172 6031 286 221 47 47 chr12 2553851 2553937 -141728552 - L2 LINE L2 -11 3261 3176 202 226 38 0 chr12 2554923 2554976 -141727513 + CT-rich Low_complexity Low_complexity 6 60 0 389 331 64 17 chr12 2555006 2555178 -141727311 - MER5A DNA MER1_type -4 185 6 306 0 0 0 chr12 2556944 2556978 -141725511 + (CA)n Simple_repeat Simple_repeat 1 34 0 2514 67 0 13 chr12 2559899 2560214 -141722275 + AluY SINE Alu 1 311 0 238 186 23 0 chr12 2560429 2560472 -141722017 + L2 LINE L2 3267 3310 -3 714 229 30 61 chr12 2561230 2561461 -141721028 - L2 LINE L2 0 3313 3090 546 186 132 12 chr12 2561842 2562009 -141720480 - MER5A DNA MER1_type -2 187 1 731 175 145 6 chr12 2562095 2562261 -141720228 - MER5A DNA MER1_type 0 189 1 775 246 29 19 chr12 2562476 2562683 -141719806 + MER63A DNA MER1_type 1 209 -1 1074 117 0 0 chr12 2564488 2564633 -141717856 + FRAM SINE Alu 1 140 -36 484 303 96 5 chr12 2565342 2565530 -141716959 + MIR SINE MIR 58 262 0 373 298 126 7 chr12 2565565 2565716 -141716773 - MIR3 SINE MIR -6 202 34 454 370 45 4 chr12 2566588 2566831 -141715658 - MIR SINE MIR -7 255 3 1742 188 10 13 chr12 2567344 2567647 -141714842 + AluJo SINE Alu 1 302 -10 2784 216 49 11 chr12 2568328 2568936 -141713553 + MER82 DNA MER2_type 14 644 -9 243 125 0 0 chr12 2570546 2570586 -141711903 + (CA)n Simple_repeat Simple_repeat 2 41 0 955 212 30 20 chr12 2571114 2571317 -141711172 + MER63A DNA MER1_type 1 205 -5 1061 174 11 0 chr12 2572686 2572864 -141709625 + MER5A DNA MER1_type 4 183 -6 2064 274 157 24 chr12 2574857 2576148 -141706341 - L2 LINE L2 0 3313 1850 2583 54 0 0 chr12 2577301 2577599 -141704890 + AluY SINE Alu 1 298 -13 213 291 154 18 chr12 2577908 2578018 -141704471 - MIR3 SINE MIR -72 136 12 233 223 58 39 chr12 2581470 2581573 -141700916 + L3b LINE CR1 1144 1248 -335 300 258 83 17 chr12 2581782 2581902 -141700587 - MIR SINE MIR -70 192 65 266 379 0 10 chr12 2583271 2583374 -141699115 - L2 LINE L2 -82 3190 3089 560 301 79 20 chr12 2583459 2583864 -141698625 - MLT1J2 LTR MaLR -2 448 20 267 309 92 44 chr12 2584016 2584265 -141698224 - L2 LINE L2 -432 2882 2622 285 238 125 12 chr12 2587206 2587286 -141695203 + MIR3 SINE MIR 120 208 0 2159 243 17 22 chr12 2587544 2588084 -141694405 - LTR31 LTR ERV1 -9 610 74 211 308 46 0 chr12 2588407 2588472 -141694017 + L2 LINE L2 3237 3304 -9 248 303 90 49 chr12 2590109 2590231 -141692258 - MIR SINE MIR -116 146 20 555 226 71 19 chr12 2590291 2590446 -141692043 + MIR3 SINE MIR 7 169 -39 266 309 81 52 chr12 2590767 2590977 -141691512 - L3 LINE CR1 -11 1566 1351 201 167 0 0 chr12 2591288 2591324 -141691165 + CT-rich Low_complexity Low_complexity 1 36 0 198 216 52 95 chr12 2592774 2592890 -141689599 + MIR SINE MIR 109 219 -43 402 353 143 28 chr12 2593572 2594034 -141688455 - L3 LINE CR1 -87 1490 976 2386 100 0 0 chr12 2594082 2594382 -141688107 + AluY SINE Alu 1 300 -11 2074 139 0 22 chr12 2594391 2594708 -141687781 + AluJo SINE Alu 1 310 -2 350 308 85 8 chr12 2595388 2595518 -141686971 + MIR3 SINE MIR 9 148 -60 1952 177 0 0 chr12 2595525 2595824 -141686665 + AluJo SINE Alu 5 303 -9 474 227 133 0 chr12 2595882 2596010 -141686479 - MIR SINE MIR -109 153 9 640 266 106 30 chr12 2596206 2596443 -141686046 + MIR SINE MIR 6 260 -2 297 298 0 11 chr12 2597413 2597507 -141684982 + T-rich Low_complexity Low_complexity 3 95 0 205 294 92 37 chr12 2597510 2597619 -141684870 - MIR3 SINE MIR -41 167 53 293 244 78 43 chr12 2597994 2598109 -141684380 + MIR SINE MIR 46 164 -98 480 266 176 23 chr12 2598821 2599208 -141683281 - LTR33 LTR ERVL -58 463 18 563 266 136 10 chr12 2599437 2599636 -141682853 - MER58A DNA MER1_type 0 224 1 1537 213 14 72 chr12 2599811 2600225 -141682264 - MLT1B LTR MaLR 0 390 1 8961 100 26 8 chr12 2603471 2604735 -141677754 - HSMAR1 DNA Mariner 0 1287 1 254 164 18 0 chr12 2606597 2606652 -141675837 + (TG)n Simple_repeat Simple_repeat 1 56 0 22 0 0 0 chr12 2607033 2607055 -141675434 + AT_rich Low_complexity Low_complexity 1 22 0 476 299 24 37 chr12 2607381 2607545 -141674944 + MIR3 SINE MIR 36 197 -11 21 36 0 0 chr12 2607557 2607585 -141674904 + AT_rich Low_complexity Low_complexity 1 28 0 466 285 163 19 chr12 2611157 2611427 -141671062 - L2 LINE L2 0 3313 3005 332 300 50 0 chr12 2612074 2612194 -141670295 + MIR3 SINE MIR 42 167 -41 185 271 0 34 chr12 2612284 2612343 -141670146 + MIR3 SINE MIR 149 205 -3 255 301 14 0 chr12 2616821 2616894 -141665595 + L2 LINE L2 3240 3313 0 22 0 0 0 chr12 2617910 2617932 -141664557 + AT_rich Low_complexity Low_complexity 1 22 0 347 284 12 0 chr12 2617954 2618035 -141664454 + L2 LINE L2 3232 3313 0 231 88 0 0 chr12 2618240 2618274 -141664215 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 324 237 223 22 chr12 2618575 2618714 -141663775 - MIR SINE MIR -93 169 3 1289 201 59 7 chr12 2618796 2619085 -141663404 - MER33 DNA MER1_type -4 320 17 207 0 0 0 chr12 2619823 2619846 -141662643 + (A)n Simple_repeat Simple_repeat 1 23 0 3500 136 34 37 chr12 2621709 2622354 -141660135 - L1MA3 LINE L1 0 6305 5663 229 252 35 61 chr12 2622950 2623065 -141659424 + L3 LINE CR1 1439 1550 -27 454 204 59 150 chr12 2623086 2623306 -141659183 + MER112 DNA MER1_type 48 247 -13 216 338 93 25 chr12 2623617 2623821 -141658668 + L2 LINE L2 2426 2643 -671 670 231 11 33 chr12 2624097 2624161 -141658328 - MER5B DNA MER1_type 0 178 114 2898 7 3 0 chr12 2624161 2624471 -141658018 + AluYb8 SINE Alu 1 311 -7 670 231 11 33 chr12 2624471 2624588 -141657901 - MER5B DNA MER1_type -64 114 1 301 347 122 0 chr12 2624856 2625003 -141657486 + MIR SINE MIR 63 227 -35 236 315 178 7 chr12 2625079 2625225 -141657264 - MIR SINE MIR -3 259 89 394 279 120 22 chr12 2626179 2626362 -141656127 + MIR SINE MIR 62 262 0 302 316 107 20 chr12 2626952 2627196 -141655293 - MLT1J LTR MaLR -22 489 225 2359 150 48 7 chr12 2627246 2627904 -141654585 + L1MB3 LINE L1 5451 6183 0 368 261 147 41 chr12 2628198 2628271 -141654218 - MER112 DNA MER1_type 0 260 196 3179 185 49 0 chr12 2628271 2628921 -141653568 - L1MB7 LINE L1 -1 6183 5502 368 261 147 41 chr12 2628921 2629065 -141653424 - MER112 DNA MER1_type -64 196 20 658 259 25 84 chr12 2629976 2630250 -141652239 - MIR SINE MIR -3 259 2 207 100 0 0 chr12 2631003 2631033 -141651456 + (T)n Simple_repeat Simple_repeat 1 30 0 447 68 0 0 chr12 2631272 2631331 -141651158 + (TCC)n Simple_repeat Simple_repeat 2 60 0 1083 106 18 0 chr12 2631437 2631781 -141650708 + (TCC)n Simple_repeat Simple_repeat 1 350 0 407 43 57 0 chr12 2631790 2631860 -141650629 + CT-rich Low_complexity Low_complexity 2 75 0 1049 99 11 17 chr12 2631861 2632042 -141650447 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1495 169 26 38 chr12 2632053 2632319 -141650170 - AluJo SINE Alu 0 312 50 180 0 0 0 chr12 2636208 2636228 -141646261 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 500 257 70 48 chr12 2636737 2636885 -141645604 - L2 LINE L2 0 3313 3153 2696 13 0 0 chr12 2636885 2637188 -141645301 - AluY SINE Alu -8 303 1 500 257 70 48 chr12 2637188 2637272 -141645217 - L2 LINE L2 -160 3153 3072 446 240 123 18 chr12 2637585 2637756 -141644733 - L2 LINE L2 -747 2567 2379 23 0 0 0 chr12 2638592 2638615 -141643874 + AT_rich Low_complexity Low_complexity 1 23 0 1545 163 7 53 chr12 2638615 2638915 -141643574 - AluJo SINE Alu -26 286 1 274 287 0 37 chr12 2639871 2639979 -141642510 + MER5A DNA MER1_type 21 124 -65 466 270 85 36 chr12 2640164 2640399 -141642090 - MIR SINE MIR 0 262 19 219 222 0 0 chr12 2640673 2640718 -141641771 + CT-rich Low_complexity Low_complexity 3 47 0 805 104 0 17 chr12 2641061 2641176 -141641313 + AluSg/x SINE Alu 188 300 -12 293 239 85 46 chr12 2642661 2642791 -141639698 + MIR SINE MIR 74 208 -54 180 318 16 0 chr12 2642898 2642961 -141639528 + MIR3 SINE MIR 145 208 0 211 200 0 0 chr12 2643595 2643630 -141638859 + polypurine Low_complexity Low_complexity 3 37 0 582 306 116 36 chr12 2645979 2646368 -141636121 + L1MC5 LINE L1 7513 7932 -29 202 243 0 43 chr12 2647421 2647491 -141634998 + CT-rich Low_complexity Low_complexity 1 67 0 323 299 51 22 chr12 2647527 2647664 -141634825 + MER91A DNA MER1_type 55 195 -1 886 293 85 34 chr12 2648128 2648970 -141633519 - L2 LINE L2 -8 3305 2425 1747 226 67 7 chr12 2650705 2651139 -141631350 - MLT1C LTR MaLR -2 465 6 269 164 15 75 chr12 2651284 2651351 -141631138 - L2 LINE L2 -11 3261 3199 * 546 214 84 39 chr12 2651332 2651486 -141631003 - MIR SINE MIR -96 166 6 189 0 0 0 chr12 2651724 2651745 -141630744 + (T)n Simple_repeat Simple_repeat 1 21 0 440 217 0 12 chr12 2651926 2652009 -141630480 + MER81 DNA DNA 1 82 -32 306 363 62 27 chr12 2652521 2652777 -141629712 - L1MEd LINE L1 -4240 2070 1806 1014 305 65 42 chr12 2652836 2653853 -141628636 - L1MEd LINE L1 -4456 1673 622 271 258 0 16 chr12 2654132 2654194 -141628295 - L1MEd LINE L1 -6058 61 1 359 308 49 35 chr12 2654197 2654340 -141628149 + MIR SINE MIR 46 190 -72 367 337 148 12 chr12 2658380 2658549 -141623940 + L3 LINE CR1 1169 1360 -217 777 282 48 9 chr12 2659881 2660108 -141622381 - MIR SINE MIR -14 248 13 481 248 67 0 chr12 2660289 2660394 -141622095 + MER81 DNA DNA 2 113 -1 680 206 11 0 chr12 2661402 2661690 -141620799 + (TG)n Simple_repeat Simple_repeat 1 291 0 364 256 35 0 chr12 2661690 2661776 -141620713 - MER5B DNA MER1_type -79 99 11 288 302 58 38 chr12 2661860 2662042 -141620447 - MIR SINE MIR -46 216 35 268 404 0 0 chr12 2662147 2662251 -141620238 + MIR SINE MIR 33 136 -72 3883 141 33 11 chr12 2662747 2663385 -141619104 - MER39B LTR ERV1 -1 652 1 463 354 53 5 chr12 2663606 2663812 -141618677 - MIR SINE MIR -37 225 10 184 351 99 45 chr12 2665251 2665584 -141616905 + L2 LINE L2 2916 3266 -6 630 195 0 46 chr12 2667285 2667455 -141615034 - MIR SINE MIR -62 146 18 251 272 0 0 chr12 2667598 2667679 -141614810 + (CAT)n Simple_repeat Simple_repeat 2 82 0 203 284 54 40 chr12 2668489 2668563 -141613926 - L2 LINE L2 -616 2698 2624 2002 85 0 4 chr12 2668862 2669121 -141613368 + AluSx SINE Alu 1 258 -54 217 122 0 41 chr12 2670445 2670494 -141611995 + (GGAGA)n Simple_repeat Simple_repeat 1 47 0 390 305 79 42 chr12 2672223 2672413 -141610076 - MIR SINE MIR -52 210 14 607 273 36 16 chr12 2674330 2674579 -141607910 + L1M4 LINE L1 4357 4610 -1536 180 342 26 26 chr12 2678809 2678885 -141603604 - L2 LINE L2 -15 3298 3223 219 312 145 22 chr12 2679074 2679212 -141603277 - MIR SINE MIR -6 256 102 202 315 41 14 chr12 2679262 2679335 -141603154 - MIR SINE MIR -24 238 164 257 233 68 27 chr12 2680037 2680110 -141602379 - L3 LINE CR1 -171 1406 1331 495 296 292 17 chr12 2680189 2680960 -141601529 - L2 LINE L2 -101 3212 2218 225 352 14 35 chr12 2681258 2681400 -141601089 - L2 LINE L2 -467 2847 2709 324 308 85 46 chr12 2683224 2683354 -141599135 + MER20B DNA MER1_type 42 176 -607 461 238 89 83 chr12 2684601 2684689 -141597800 - MIR SINE MIR 0 262 171 1540 164 26 48 chr12 2684689 2685000 -141597489 + AluJo SINE Alu 1 304 -8 461 238 89 83 chr12 2685000 2685079 -141597410 - MIR SINE MIR -91 171 94 182 374 12 0 chr12 2685842 2685925 -141596564 + L2 LINE L2 3189 3272 0 1288 136 189 12 chr12 2687645 2687888 -141594601 + AluJo SINE Alu 1 286 -26 657 264 88 0 chr12 2688516 2688709 -141593780 - MIR SINE MIR -45 217 8 200 111 28 0 chr12 2690387 2690423 -141592066 + CT-rich Low_complexity Low_complexity 3 39 0 195 198 11 44 chr12 2693171 2693262 -141589227 + T-rich Low_complexity Low_complexity 2 89 0 215 298 0 40 chr12 2693466 2693590 -141588899 + T-rich Low_complexity Low_complexity 1 119 0 486 172 0 0 chr12 2694812 2694911 -141587578 + (TG)n Simple_repeat Simple_repeat 1 99 0 207 279 78 47 chr12 2695526 2695655 -141586834 - MIR SINE MIR -53 209 77 1008 279 147 44 chr12 2697014 2698050 -141584439 - L2 LINE L2 -2 3311 2104 305 294 154 7 chr12 2698524 2698667 -141583822 + MIR3 SINE MIR 38 201 -7 314 310 20 10 chr12 2699164 2699264 -141583225 - MIR SINE MIR -63 145 45 192 323 54 11 chr12 2700282 2700375 -141582114 - MIR SINE MIR -66 142 46 28 29 0 0 chr12 2703481 2703516 -141578973 + AT_rich Low_complexity Low_complexity 1 35 0 209 56 0 28 chr12 2705279 2705315 -141577174 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 330 26 0 0 chr12 2705757 2705772 -141576717 + (GA)n Simple_repeat Simple_repeat 1 54 0 330 26 0 0 chr12 2705772 2705811 -141576678 + (GA)n Simple_repeat Simple_repeat 1 39 0 1952 134 0 50 chr12 2706861 2707182 -141575307 + AluJo SINE Alu 1 305 -7 201 231 0 0 chr12 2709787 2709826 -141572663 + C-rich Low_complexity Low_complexity 3 41 0 660 231 65 0 chr12 2712194 2712363 -141570126 - MIR SINE MIR -34 228 49 206 200 0 0 chr12 2713354 2713389 -141569100 + polypurine Low_complexity Low_complexity 1 35 0 271 281 48 0 chr12 2714550 2714634 -141567855 + MIR SINE MIR 62 148 -74 6564 135 27 9 chr12 2714712 2715879 -141566610 + L1 LINE L1 3732 4919 -1227 448 326 30 33 chr12 2715875 2716179 -141566310 + HAL1 LINE L1 1445 1747 -760 * 477 247 84 59 chr12 2716444 2716683 -141565806 + L1MDa LINE L1 2315 2559 -3981 351 328 139 14 chr12 2716690 2717367 -141565122 + L1MDa LINE L1 2567 3423 -3117 6193 122 81 31 chr12 2717367 2718540 -141563949 + Tigger3b DNA MER2_type 1 1231 0 351 328 139 14 chr12 2718540 2718914 -141563575 + L1MDa LINE L1 3423 3749 -2791 2349 96 0 0 chr12 2719563 2719855 -141562634 + AluSg SINE Alu 1 292 -18 1675 195 0 14 chr12 2719997 2720284 -141562205 + AluJo SINE Alu 3 285 -27 417 39 0 0 chr12 2720284 2720335 -141562154 + (CA)n Simple_repeat Simple_repeat 2 52 0 529 344 98 17 chr12 2720356 2720714 -141561775 + L1MDa LINE L1 3704 4090 -2450 416 345 58 9 chr12 2720697 2720920 -141561569 + L1MDa LINE L1 4545 4778 -1762 * 506 324 100 28 chr12 2720906 2720980 -141561509 + L1ME4a LINE L1 4475 4542 -1998 2347 106 0 0 chr12 2720980 2721291 -141561198 + AluY SINE Alu 1 311 0 506 324 100 28 chr12 2721291 2721506 -141560983 + L1ME4a LINE L1 4542 4785 -1755 1210 299 39 25 chr12 2721514 2722260 -141560229 + L1ME4a LINE L1 4891 5646 -894 1988 113 0 0 chr12 2722276 2722567 -141559922 + L1PB2 LINE L1 5429 5719 -432 786 134 140 23 chr12 2722565 2722736 -141559753 + L1PB2 LINE L1 5960 6150 -1 * 2695 43 3 0 chr12 2722755 2723059 -141559430 - AluY SINE Alu -6 305 1 413 315 148 19 chr12 2723066 2723659 -141558830 + L1ME4a LINE L1 5657 6326 -238 2087 150 3 0 chr12 2724927 2725227 -141557262 + AluSx SINE Alu 1 301 -11 198 175 25 0 chr12 2725917 2725957 -141556532 + MIR3 SINE MIR 165 205 -3 2483 103 66 15 chr12 2727471 2727878 -141554611 - MSTA LTR MaLR 0 428 1 1403 77 101 0 chr12 2728266 2728475 -141554014 + MER30 DNA MER1_type 1 230 0 369 312 98 0 chr12 2728732 2728905 -141553584 + MER91A DNA MER1_type 4 193 -3 401 308 24 35 chr12 2729029 2729198 -141553291 + MER5A DNA MER1_type 2 168 -21 234 329 20 34 chr12 2729065 2729214 -141553275 - MER5A DNA MER1_type -27 162 16 * 235 345 86 2 chr12 2729306 2729433 -141553056 + MIR SINE MIR 16 152 -56 2258 103 17 0 chr12 2729598 2729898 -141552591 + AluSg SINE Alu 1 305 -5 2349 96 0 0 chr12 2730039 2730332 -141552157 - AluSc SINE Alu -16 293 1 266 284 116 13 chr12 2730345 2730500 -141551989 + L1ME4a LINE L1 6326 6496 -19 1720 226 82 5 chr12 2731402 2731831 -141550658 - MLT1C LTR MaLR 0 467 6 237 185 111 0 chr12 2732063 2732117 -141550372 - MIR SINE MIR -201 61 2 996 218 223 47 chr12 2732147 2732213 -141550276 - MLT1E3 LTR MaLR -1 623 570 2277 93 34 0 chr12 2732213 2732504 -141549985 + AluSp SINE Alu 1 301 -12 996 218 223 47 chr12 2732504 2732846 -141549643 - MLT1E3 LTR MaLR -54 570 143 253 284 0 73 chr12 2733302 2733443 -141549046 + G-rich Low_complexity Low_complexity 1 130 0 754 209 115 13 chr12 2734107 2734341 -141548148 - MER20B DNA MER1_type 0 783 526 996 274 150 19 chr12 2734499 2734967 -141547522 - MER20B DNA MER1_type -253 530 2 337 316 184 0 chr12 2735024 2735160 -141547329 - MIR SINE MIR -56 206 46 404 276 164 51 chr12 2735734 2736009 -141546480 + L1MC4a LINE L1 5862 6167 -1641 559 265 12 35 chr12 2737244 2737414 -141545075 + Charlie8 DNA MER1_type 115 280 -2137 303 242 0 0 chr12 2740313 2740375 -141542114 + MIR SINE MIR 195 256 -6 190 252 122 89 chr12 2741215 2741338 -141541151 - MIR SINE MIR -92 170 44 261 300 0 0 chr12 2741426 2741496 -141540993 + (TG)n Simple_repeat Simple_repeat 1 70 0 1356 78 16 3 chr12 2741870 2742615 -141539874 + (CA)n Simple_repeat Simple_repeat 1 754 0 3923 280 50 22 chr12 2742674 2744002 -141538487 + ERVL LTR ERVL 3074 4438 -1326 751 169 21 69 chr12 2744158 2744347 -141538142 + LTR41 LTR ERVL 1 180 -593 394 227 171 11 chr12 2744558 2744734 -141537755 + LTR50 LTR ERVL 590 793 -2 183 239 130 0 chr12 2744751 2744797 -141537692 + L2 LINE L2 2928 2979 -334 281 277 0 15 chr12 2745120 2745185 -141537304 - L2 LINE L2 -11 3302 3239 241 328 74 25 chr12 2745345 2745467 -141537022 + MER91A DNA MER1_type 1 128 -68 1802 256 67 53 chr12 2745839 2746057 -141536432 - MLT1E LTR MaLR 0 593 379 2026 116 7 7 chr12 2746057 2746350 -141536139 + AluSq SINE Alu 1 293 -20 1802 256 67 53 chr12 2746350 2746716 -141535773 - MLT1E LTR MaLR -214 379 1 183 263 35 18 chr12 2746949 2747006 -141535483 - L3b LINE CR1 -185 1398 1341 808 107 43 11 chr12 2748374 2748825 -141533664 + (CA)n Simple_repeat Simple_repeat 1 465 0 292 284 26 17 chr12 2748885 2749001 -141533488 + MER112 DNA MER1_type 1 117 -143 369 336 37 29 chr12 2749075 2749319 -141533170 - MER112 DNA MER1_type -7 253 8 213 311 0 40 chr12 2749420 2749494 -141532995 - MIR SINE MIR -81 181 111 240 262 0 0 chr12 2750183 2750242 -141532247 + MIR SINE MIR 94 153 -55 2289 83 3 0 chr12 2753460 2753760 -141528729 - AluSp SINE Alu -12 301 1 192 118 29 29 chr12 2754016 2754050 -141528439 + L3b LINE CR1 1293 1326 -257 292 198 430 0 chr12 2755020 2755141 -141527348 - MER5B DNA MER1_type -4 174 2 909 274 177 25 chr12 2755142 2755628 -141526861 + L3 LINE CR1 1010 1569 -8 652 235 88 14 chr12 2755643 2755860 -141526629 - L2 LINE L2 -3 3310 3078 1542 183 3 13 chr12 2756248 2756554 -141525935 - AluJo SINE Alu -9 303 1 23 33 0 0 chr12 2757381 2757411 -141525078 + GC_rich Low_complexity Low_complexity 1 30 0 1446 123 18 31 chr12 2764375 2764603 -141517886 + L1M4c LINE L1 19 243 -6141 3861 160 54 9 chr12 2764734 2765434 -141517055 + L1M4c LINE L1 249 980 -5404 * 45728 32 3 1 chr12 2765419 2771564 -141510925 + L1PA4 LINE L1 2 6155 0 10623 203 30 12 chr12 2771577 2775830 -141506659 + L1M4c LINE L1 947 5282 -1100 838 122 0 8 chr12 2775825 2775956 -141506533 + L1MB3 LINE L1 5818 5947 -224 * 501 145 226 8 chr12 2775963 2776087 -141506402 + L1MB3 LINE L1 6032 6182 -1 403 307 6 61 chr12 2777417 2777881 -141504608 + MER5A DNA MER1_type 8 161 -28 2173 109 0 0 chr12 2777459 2777761 -141504728 + AluSg SINE Alu 1 302 -8 200 300 87 47 chr12 2777761 2777903 -141504586 - MER5B DNA MER1_type -27 151 1 734 289 32 40 chr12 2778934 2779211 -141503278 + L2 LINE L2 2635 2909 -405 679 228 23 84 chr12 2779229 2779444 -141503045 + LTR41 LTR ERVL 1 202 -571 387 221 154 40 chr12 2779726 2779875 -141502614 + LTR41 LTR ERVL 605 770 -3 473 362 22 13 chr12 2780275 2780504 -141501985 + ERVL LTR ERVL 461 691 -5073 204 125 0 0 chr12 2780729 2780761 -141501728 + (TG)n Simple_repeat Simple_repeat 1 32 0 2014 146 50 20 chr12 2780776 2780826 -141501663 + THE1C LTR MaLR 8 55 -320 2293 83 0 3 chr12 2780826 2781128 -141501361 - AluSq SINE Alu -12 301 1 2014 146 50 20 chr12 2781128 2781434 -141501055 + THE1C LTR MaLR 55 375 0 235 250 0 29 chr12 2781434 2781502 -141500987 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 5921 196 21 114 chr12 2781503 2782298 -141500191 + L1 LINE L1 2679 3547 -2599 2211 102 0 0 chr12 2782298 2782593 -141499896 + AluSg SINE Alu 3 297 -13 5921 196 21 114 chr12 2782593 2783087 -141499402 + L1 LINE L1 3547 4086 -2060 1063 153 0 0 chr12 2783087 2783257 -141499232 + AluSg/x SINE Alu 135 304 -8 5921 196 21 114 chr12 2783257 2783766 -141498723 + L1 LINE L1 4086 4462 -1684 4218 142 41 1 chr12 2783766 2784476 -141498013 + L1PA16 LINE L1 5412 6149 -17 5921 196 21 114 chr12 2784476 2784493 -141497996 + L1 LINE L1 4462 4479 -1667 3638 321 40 7 chr12 2784523 2785708 -141496781 + ERVL LTR ERVL 1758 2985 -2779 951 117 0 0 chr12 2785708 2785888 -141496601 + (CA)n Simple_repeat Simple_repeat 1 180 0 3638 321 40 7 chr12 2785888 2785906 -141496583 + ERVL LTR ERVL 2985 3001 -2763 924 135 0 0 chr12 2785906 2786354 -141496135 + (CA)n Simple_repeat Simple_repeat 1 448 0 377 88 0 15 chr12 2786367 2786435 -141496054 + (CA)n Simple_repeat Simple_repeat 2 68 0 335 266 175 28 chr12 2787051 2787194 -141495295 + MIR3 SINE MIR 38 201 -7 1352 142 145 14 chr12 2988020 2988309 -141294180 - L1 LINE L1 -2363 3783 3457 257 298 11 43 chr12 2988317 2988411 -141294078 + L2 LINE L2 3000 3090 -182 704 232 24 68 chr12 2988587 2988794 -141293695 - MER58A DNA MER1_type 0 224 27 1330 178 22 0 chr12 2988814 2989083 -141293406 + L1MA4 LINE L1 6016 6290 -10 23 0 0 0 chr12 2989083 2989106 -141293383 + AT_rich Low_complexity Low_complexity 1 23 0 259 256 79 43 chr12 2989244 2989408 -141293081 + L1ME4a LINE L1 5935 6104 -17 810 111 8 0 chr12 2989825 2989942 -141292547 + FLAM_C SINE Alu 1 118 -15 2342 83 3 0 chr12 2989979 2990268 -141292221 + AluY SINE Alu 1 290 -21 942 57 0 0 chr12 2990276 2990398 -141292091 + HERVK9 LTR ERVK 5634 5755 -161 1046 59 15 0 chr12 2990399 2990534 -141291955 - MER9 LTR ERVK -374 137 1 476 172 108 0 chr12 2990535 2990628 -141291861 - AluSg SINE Alu -206 104 2 1017 214 10 0 chr12 2990630 2990836 -141291653 + L1MB8 LINE L1 5354 5561 -617 986 68 7 103 chr12 2990836 2990982 -141291507 + AluSq/x SINE Alu 1 132 -180 1264 105 6 0 chr12 2991515 2991701 -141290788 + AluSp SINE Alu 121 307 0 2421 199 38 25 chr12 2991701 2992260 -141290229 + L1MB8 LINE L1 5554 6119 -59 1282 182 0 0 chr12 2992262 2992471 -141290018 + AluJo SINE Alu 7 215 -97 2048 120 18 0 chr12 2992713 2992997 -141289492 - AluSx SINE Alu -23 289 1 577 216 8 24 chr12 2993796 2993921 -141288568 + MER2 DNA MER2_type 1 123 -222 3261 92 6 32 chr12 2994137 2994639 -141287850 - LTR22B LTR ERVK -3 489 1 207 0 0 0 chr12 2995230 2995253 -141287236 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2463 93 0 0 chr12 2995291 2995591 -141286898 + AluSp SINE Alu 1 300 -13 420 234 0 43 chr12 2995891 2995985 -141286504 - L1MC4 LINE L1 -1339 6703 6614 329 275 25 0 chr12 2995929 2996009 -141286480 + L1MC3 LINE L1 6571 6652 -1133 * 2169 115 7 0 chr12 2996085 2996373 -141286116 + AluSx SINE Alu 1 290 -22 2740 264 39 11 chr12 2996674 2996734 -141285755 + L1ME3 LINE L1 5173 5230 -932 243 0 0 0 chr12 2996734 2996761 -141285728 + (TG)n Simple_repeat Simple_repeat 2 28 0 2740 264 39 11 chr12 2996761 2996823 -141285666 + L1ME3 LINE L1 5230 5289 -873 2567 73 0 10 chr12 2996823 2997137 -141285352 - AluSx SINE Alu -1 311 1 2740 264 39 11 chr12 2997137 2997941 -141284548 + L1ME3 LINE L1 5289 6131 -31 245 227 82 41 chr12 2998108 2998205 -141284284 + L2 LINE L2 3198 3298 -15 928 128 0 0 chr12 2999066 2999191 -141283298 - FLAM_C SINE Alu -18 125 1 2021 134 14 7 chr12 2999744 3000036 -141282453 + AluJb SINE Alu 3 296 -16 332 292 129 67 chr12 3000102 3000149 -141282340 - MIR SINE MIR -29 233 190 1614 162 27 34 chr12 3000149 3000446 -141282043 + AluJb SINE Alu 2 296 -16 332 292 129 67 chr12 3000446 3000576 -141281913 - MIR SINE MIR -72 190 45 2588 71 0 0 chr12 3000750 3001061 -141281428 + AluY SINE Alu 1 311 0 272 329 87 14 chr12 3001986 3002193 -141280296 - MIR SINE MIR -35 227 6 1333 93 6 0 chr12 3002759 3002931 -141279558 + AluSq SINE Alu 1 173 -140 502 94 0 0 chr12 3002931 3003016 -141279473 + AluJ/FRAM SINE Alu 224 308 -4 192 276 92 13 chr12 3003054 3003130 -141279359 - L2 LINE L2 -4 3309 3228 186 43 0 0 chr12 3003885 3003908 -141278581 + (A)n Simple_repeat Simple_repeat 1 23 0 31 58 0 0 chr12 3004372 3004424 -141278065 + GC_rich Low_complexity Low_complexity 1 52 0 30 93 0 0 chr12 3004631 3004717 -141277772 + GC_rich Low_complexity Low_complexity 1 86 0 28 61 0 0 chr12 3004954 3005003 -141277486 + GC_rich Low_complexity Low_complexity 1 49 0 205 267 144 0 chr12 3005881 3005971 -141276518 - MIR SINE MIR -66 196 94 355 297 40 20 chr12 3007922 3008070 -141274419 + MIR3 SINE MIR 37 187 -21 180 297 55 55 chr12 3008583 3008711 -141273778 - L2 LINE L2 0 3272 3145 700 228 6 6 chr12 3010701 3010859 -141271630 + FRAM SINE Alu 1 158 -18 386 319 32 27 chr12 3011029 3011214 -141271275 - L1MC4a LINE L1 -1871 5937 5752 2319 100 13 0 chr12 3011227 3011527 -141270962 - AluSq SINE Alu -9 304 1 367 191 142 53 chr12 3011549 3011758 -141270731 - Charlie5 DNA MER1_type -27 2585 3 2018 152 0 7 chr12 3011819 3012121 -141270368 - AluJb SINE Alu -12 300 1 437 216 0 39 chr12 3013916 3014018 -141268471 + AluJb SINE Alu 191 288 -24 334 286 71 26 chr12 3014136 3014290 -141268199 - MIR SINE MIR 0 262 102 244 185 283 22 chr12 3014335 3014427 -141268062 + MIR3 SINE MIR 90 205 -3 215 295 186 38 chr12 3014791 3015028 -141267461 + L2 LINE L2 2546 2817 -497 945 162 6 39 chr12 3015519 3015533 -141266956 - AluJb SINE Alu -3 309 296 2250 123 10 0 chr12 3015533 3015835 -141266654 - AluSx SINE Alu -7 305 1 945 162 6 39 chr12 3015835 3015849 -141266640 - AluJb SINE Alu -16 296 283 213 65 0 0 chr12 3015849 3015880 -141266609 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 945 162 6 39 chr12 3015880 3016029 -141266460 - AluJb SINE Alu -29 283 137 2243 124 0 0 chr12 3016029 3016328 -141266161 - AluSq SINE Alu -14 299 1 310 183 157 78 chr12 3016516 3016631 -141265858 - L1MB5 LINE L1 -9 6165 6042 2416 83 0 32 chr12 3017137 3017451 -141265038 + AluY SINE Alu 1 304 -7 1996 96 37 0 chr12 3017921 3018191 -141264298 + AluSq SINE Alu 21 300 -13 2456 88 3 0 chr12 3018191 3018496 -141263993 + AluY SINE Alu 1 306 -5 2364 94 7 10 chr12 3018749 3019058 -141263431 + AluSg SINE Alu 1 308 -2 1904 178 7 0 chr12 3019075 3019378 -141263111 - AluSx SINE Alu -7 305 1 832 153 108 0 chr12 3019821 3019978 -141262511 + AluSg/x SINE Alu 136 309 -3 2466 65 0 46 chr12 3019980 3020121 -141262368 + AluSc SINE Alu 1 147 -162 2447 58 0 3 chr12 3020121 3020414 -141262075 + AluY SINE Alu 1 292 -19 207 0 0 0 chr12 3020414 3020437 -141262052 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 2466 65 0 46 chr12 3020437 3020618 -141261871 + AluSc SINE Alu 145 309 0 530 194 114 55 chr12 3021186 3021423 -141261066 + MER112 DNA MER1_type 3 253 -7 1478 108 10 0 chr12 3022135 3022339 -141260150 - AluSg/x SINE Alu -15 295 90 277 122 0 0 chr12 3022339 3022380 -141260109 - Alu SINE Alu -261 41 1 290 230 0 27 chr12 3022391 3022465 -141260024 + MIR SINE MIR 184 255 -7 281 348 51 8 chr12 3022491 3022609 -141259880 - L2 LINE L2 0 3272 3150 1827 180 0 3 chr12 3023038 3023338 -141259151 - AluJo SINE Alu -13 299 1 286 269 55 71 chr12 3023500 3023641 -141258848 + L2 LINE L2 3130 3269 -44 2119 157 0 6 chr12 3023641 3023954 -141258535 + AluJb SINE Alu 1 311 -1 286 269 55 71 chr12 3023954 3023994 -141258495 + L2 LINE L2 3269 3308 -5 1174 102 0 30 chr12 3024070 3024236 -141258253 - AluSq SINE Alu -16 297 137 1788 170 0 50 chr12 3024957 3025125 -141257364 - AluJo SINE Alu -11 301 126 2436 87 3 0 chr12 3025125 3025424 -141257065 - AluSx SINE Alu -12 300 1 2525 81 0 0 chr12 3025424 3025722 -141256767 - AluY SINE Alu -13 298 1 2049 151 0 22 chr12 3025722 3026039 -141256450 - AluJb SINE Alu -2 310 1 1788 170 0 50 chr12 3026039 3026185 -141256304 - AluJo SINE Alu -183 129 1 323 339 9 9 chr12 3027465 3027580 -141254909 - L2 LINE L2 0 3313 3199 746 214 37 21 chr12 3027590 3027777 -141254712 + AluJo SINE Alu 118 307 -5 2048 138 24 0 chr12 3027829 3028125 -141254364 + AluSq SINE Alu 1 303 -10 2002 121 13 49 chr12 3028129 3028276 -141254213 + AluSx SINE Alu 1 133 -179 2400 77 0 13 chr12 3028276 3028575 -141253914 + AluY SINE Alu 1 295 -16 2002 121 13 49 chr12 3028575 3028733 -141253756 + AluSx SINE Alu 133 295 -17 267 279 54 0 chr12 3028737 3028848 -141253641 - L2 LINE L2 -175 3138 3022 203 103 26 0 chr12 3029711 3029750 -141252739 + C-rich Low_complexity Low_complexity 2 41 0 1676 191 30 10 chr12 3031011 3031315 -141251174 - AluJo SINE Alu -2 310 1 469 245 129 0 chr12 3031622 3031761 -141250728 + MIR SINE MIR 36 192 -70 692 182 186 23 chr12 3034070 3034290 -141248199 - MER112 DNA MER1_type 0 256 1 2011 163 0 3 chr12 3034857 3035157 -141247332 - AluSx SINE Alu -13 299 1 424 136 0 0 chr12 3037331 3037397 -141245092 - L1MB7 LINE L1 -98 6086 6021 2430 76 3 10 chr12 3037651 3037952 -141244537 + AluSp SINE Alu 1 299 -14 829 146 51 22 chr12 3038018 3038155 -141244334 + FLAM_C SINE Alu 1 141 -2 1646 167 41 31 chr12 3038583 3038876 -141243613 + AluJb SINE Alu 3 298 -14 2232 105 3 0 chr12 3038893 3039178 -141243311 + AluSx SINE Alu 5 290 -22 230 262 71 56 chr12 3039251 3039377 -141243112 - L2 LINE L2 -213 3059 2932 2218 147 0 0 chr12 3040395 3040702 -141241787 + AluSx SINE Alu 1 307 -5 204 192 0 58 chr12 3040822 3040856 -141241633 + CT-rich Low_complexity Low_complexity 4 36 -16 638 241 0 0 chr12 3040856 3040989 -141241500 - FLAM_A SINE Alu 0 133 1 204 192 0 58 chr12 3040989 3041006 -141241483 + CT-rich Low_complexity Low_complexity 36 52 0 401 250 264 0 chr12 3041149 3041289 -141241200 + MER5A DNA MER1_type 11 187 -2 256 293 151 82 chr12 3041644 3041876 -141240613 + L2 LINE L2 3023 3270 -2 804 221 103 0 chr12 3042826 3043039 -141239450 - MIR SINE MIR 0 262 28 294 29 0 0 chr12 3044250 3044285 -141238204 + (TG)n Simple_repeat Simple_repeat 1 35 0 186 103 0 0 chr12 3044285 3044314 -141238175 + (GA)n Simple_repeat Simple_repeat 2 30 0 821 265 108 42 chr12 3044971 3045379 -141237110 - L1ME3A LINE L1 -260 5910 5476 2137 182 44 22 chr12 3045675 3046132 -141236357 + MLT1C LTR MaLR 1 467 0 2272 93 0 52 chr12 3046149 3046289 -141236200 + AluSq SINE Alu 7 153 -160 2595 34 0 3 chr12 3046289 3046581 -141235908 + AluY SINE Alu 1 291 -20 2272 93 0 52 chr12 3046581 3046764 -141235725 + AluSq SINE Alu 153 313 0 1205 144 0 0 chr12 3046768 3046935 -141235554 + FRAM SINE Alu 1 159 -17 2097 141 3 0 chr12 3048103 3048393 -141234096 + AluSx SINE Alu 1 291 -21 737 212 71 16 chr12 3048657 3048841 -141233648 - L2 LINE L2 -1 3312 3119 1959 169 19 0 chr12 3048841 3049213 -141233276 + L1PA16 LINE L1 5787 6165 -1 235 191 21 149 chr12 3049214 3049260 -141233229 + L1M4 LINE L1 4505 4555 -1591 2270 92 0 23 chr12 3049260 3049563 -141232926 + AluSx SINE Alu 1 296 -16 235 191 21 149 chr12 3049563 3049614 -141232875 + L1M4 LINE L1 4555 4581 -1565 2418 60 0 0 chr12 3049614 3049896 -141232593 + AluY SINE Alu 17 298 -13 235 191 21 149 chr12 3049896 3049938 -141232551 + L1M4 LINE L1 4581 4627 -1519 820 160 33 149 chr12 3050637 3050813 -141231676 + MER33 DNA MER1_type 5 200 -2385 2346 91 0 3 chr12 3050813 3051110 -141231379 - AluSc SINE Alu -13 296 1 820 160 33 149 chr12 3051110 3051207 -141231282 + MER33 DNA MER1_type 200 307 -2278 2394 94 0 7 chr12 3051207 3051514 -141230975 - AluSc SINE Alu -4 305 1 820 160 33 149 chr12 3051514 3051553 -141230936 + MER33 DNA MER1_type 307 274 -2311 1802 158 34 0 chr12 3051553 3051844 -141230645 + AluJb SINE Alu 1 301 -11 820 160 33 149 chr12 3051844 3051891 -141230598 + MER33 DNA MER1_type 273 324 0 367 339 103 21 chr12 3051895 3052128 -141230361 - L3b LINE CR1 -140 1443 1192 233 298 18 0 chr12 3052495 3052552 -141229937 - MIR SINE MIR -109 153 96 2316 106 0 0 chr12 3052624 3052917 -141229572 + AluSx SINE Alu 1 293 -19 423 260 63 8 chr12 3052918 3053045 -141229444 + MIR SINE MIR 59 192 -70 1861 139 27 14 chr12 3053071 3053365 -141229124 + AluJb SINE Alu 1 298 -14 2032 154 0 0 chr12 3053365 3053657 -141228832 + AluSx SINE Alu 1 292 -20 816 154 0 0 chr12 3054962 3055092 -141227397 - FLAM_A SINE Alu -1 132 3 350 281 50 0 chr12 3055598 3055719 -141226770 + MIR3 SINE MIR 78 204 -4 923 208 60 1 chr12 3055978 3056277 -141226212 - L1MB7 LINE L1 -2 6169 5833 1711 153 5 83 chr12 3056291 3056470 -141226019 - L1MB4 LINE L1 -2 6178 5986 2279 76 10 30 chr12 3056470 3056774 -141225715 + AluY SINE Alu 1 298 -13 1711 153 5 83 chr12 3056774 3057013 -141225476 - L1MB4 LINE L1 -194 5986 5793 359 272 53 27 chr12 3057054 3057260 -141225229 - MIR SINE MIR -12 250 33 396 40 0 0 chr12 3057956 3058006 -141224483 + (CA)n Simple_repeat Simple_repeat 2 51 0 265 250 68 119 chr12 3059148 3059287 -141223202 - MER5B DNA MER1_type 0 178 48 2359 83 7 13 chr12 3059287 3059589 -141222900 + AluSg SINE Alu 1 300 -10 265 250 68 119 chr12 3059589 3059625 -141222864 - MER5B DNA MER1_type -130 48 12 2165 107 7 4 chr12 3059747 3060065 -141222424 - AluSx SINE Alu 0 319 1 216 0 0 0 chr12 3060072 3060096 -141222393 + (T)n Simple_repeat Simple_repeat 1 24 0 1146 108 25 0 chr12 3060111 3060268 -141222221 + AluSp SINE Alu 134 294 -19 1130 126 133 96 chr12 3060283 3060331 -141222158 - MER7C DNA MER2_type -2723 305 260 218 81 27 0 chr12 3060331 3060368 -141222121 + (TGAG)n Simple_repeat Simple_repeat 1 38 0 1130 126 133 96 chr12 3060368 3060437 -141222052 - MER7C DNA MER2_type -2768 260 195 2096 127 0 3 chr12 3060437 3060736 -141221753 - AluSx SINE Alu -14 298 1 195 48 48 24 chr12 3060742 3060784 -141221705 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 2193 114 0 0 chr12 3060791 3061072 -141221417 - AluSx SINE Alu -31 281 1 1130 126 133 96 chr12 3061072 3061231 -141221258 - MER7C DNA MER2_type -2842 186 2 249 298 12 0 chr12 3061298 3061382 -141221107 - L2 LINE L2 -51 3262 3178 321 192 70 109 chr12 3061450 3061463 -141221026 + MIR SINE MIR 80 92 -170 1765 169 14 7 chr12 3061463 3061758 -141220731 - AluJo SINE Alu -15 297 1 321 192 70 109 chr12 3061758 3061816 -141220673 + MIR SINE MIR 92 151 -111 2215 96 23 7 chr12 3061816 3062119 -141220370 + AluSx SINE Alu 1 308 -4 321 192 70 109 chr12 3062119 3062202 -141220287 + MIR SINE MIR 151 229 -33 2466 74 10 0 chr12 3062369 3062666 -141219823 - AluSq SINE Alu -13 300 1 306 67 0 0 chr12 3062671 3062716 -141219773 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 2227 99 3 0 chr12 3063124 3063418 -141219071 - AluSp SINE Alu -18 295 1 223 288 85 25 chr12 3063433 3063551 -141218938 - MIR SINE MIR -44 218 94 205 258 118 0 chr12 3063703 3063796 -141218693 + L2 LINE L2 3160 3263 -9 451 288 162 21 chr12 3065177 3065368 -141217121 - MIR SINE MIR -43 219 2 2206 103 10 3 chr12 3065464 3065756 -141216733 - AluSq SINE Alu -19 294 1 489 348 14 43 chr12 3068963 3069042 -141213447 + L1ME4a LINE L1 4932 5012 -1134 431 134 134 0 chr12 3069042 3069124 -141213365 + HY4 scRNA scRNA 1 93 0 489 348 14 43 chr12 3069124 3069326 -141213163 + L1ME4a LINE L1 5012 5205 -941 1364 183 77 18 chr12 3069332 3069605 -141212884 + AluJb SINE Alu 19 307 -5 2292 84 31 0 chr12 3069685 3069972 -141212517 + AluSx SINE Alu 1 296 -16 2430 81 0 3 chr12 3069980 3070276 -141212213 + AluSg SINE Alu 1 295 -15 718 318 65 31 chr12 3070297 3070425 -141212064 + L1ME4a LINE L1 5305 5427 -735 701 72 0 0 chr12 3070425 3070522 -141211967 + L1PB1 LINE L1 6054 6150 -1 718 318 65 31 chr12 3070522 3070992 -141211497 + L1ME4a LINE L1 5427 5887 -275 2440 93 0 0 chr12 3070992 3071292 -141211197 + AluSg SINE Alu 1 300 -10 718 318 65 31 chr12 3071292 3071329 -141211160 + L1ME4a LINE L1 5887 5921 -241 23 39 0 39 chr12 3071611 3071635 -141210854 + AT_rich Low_complexity Low_complexity 1 24 -26 1679 187 0 37 chr12 3071635 3071935 -141210554 - AluJo SINE Alu -23 289 1 23 39 0 39 chr12 3071935 3071962 -141210527 + AT_rich Low_complexity Low_complexity 24 50 0 902 171 51 37 chr12 3072154 3072370 -141210119 + MER20 DNA MER1_type 1 219 0 1829 157 10 23 chr12 3072483 3072788 -141209701 - AluJo SINE Alu -11 301 1 2290 93 20 3 chr12 3072798 3073098 -141209391 - AluSg SINE Alu -5 305 1 2537 88 0 0 chr12 3074737 3075045 -141207444 - AluSp SINE Alu -4 309 2 363 294 52 15 chr12 3075071 3075207 -141207282 - MER5A DNA MER1_type -6 183 43 * 511 282 20 13 chr12 3075089 3075238 -141207251 + MER5A DNA MER1_type 40 189 0 2179 137 0 0 chr12 3075964 3076264 -141206225 + AluSx SINE Alu 1 300 -12 1299 169 118 32 chr12 3076276 3076555 -141205934 + AluJb SINE Alu 1 303 -9 1495 36 0 0 chr12 3076604 3076769 -141205720 + AluY SINE Alu 131 295 -16 2430 84 3 16 chr12 3076787 3077097 -141205392 + AluSx SINE Alu 1 306 -6 243 246 53 0 chr12 3077982 3078039 -141204450 - MIR3 SINE MIR -3 205 146 184 320 0 0 chr12 3078196 3078246 -141204243 + MIR SINE MIR 37 86 -122 1732 154 3 63 chr12 3078364 3078530 -141203959 - AluJb SINE Alu -13 299 159 2370 94 3 7 chr12 3078530 3078829 -141203660 - AluSq SINE Alu -14 299 2 1732 154 3 63 chr12 3078829 3078980 -141203509 - AluJb SINE Alu -153 159 1 332 225 67 34 chr12 3078989 3079078 -141203411 - L1ME3 LINE L1 -1 6161 6070 1992 138 52 0 chr12 3079079 3079369 -141203120 - AluSp SINE Alu -8 305 1 1874 120 3 46 chr12 3079393 3079476 -141203013 + L1PA15 LINE L1 5854 5939 -226 2366 88 0 0 chr12 3079476 3079770 -141202719 + AluSc SINE Alu 1 294 -15 2371 92 3 0 chr12 3079772 3080076 -141202413 + AluSg SINE Alu 1 305 -5 1874 120 3 46 chr12 3080076 3080315 -141202174 + L1PA15 LINE L1 5940 6165 0 2021 124 7 20 chr12 3080459 3080757 -141201732 + AluJb SINE Alu 1 294 -18 188 320 98 52 chr12 3080911 3081064 -141201425 - L2 LINE L2 -15 3257 3098 2264 106 30 0 chr12 3081421 3081722 -141200767 + AluSx SINE Alu 1 310 -2 1253 182 0 10 chr12 3081948 3082157 -141200332 + AluJo SINE Alu 86 292 -20 2383 112 0 3 chr12 3082209 3082521 -141199968 + AluSx SINE Alu 1 311 -1 667 167 0 0 chr12 3082525 3082639 -141199850 + FLAM_C SINE Alu 2 115 -18 2243 101 13 7 chr12 3082663 3082971 -141199518 - AluSx SINE Alu -2 310 1 2467 97 0 0 chr12 3084076 3084386 -141198103 - AluSx SINE Alu -2 310 1 360 174 14 0 chr12 3084535 3084604 -141197885 - MER91C DNA MER1_type -8 132 63 1828 91 20 20 chr12 3084845 3085097 -141197392 - AluSq SINE Alu -4 309 58 1966 81 18 15 chr12 3135097 3135369 -141147120 - AluSq SINE Alu -40 273 1 22 88 0 0 chr12 3136309 3136366 -141146123 + GC_rich Low_complexity Low_complexity 1 57 0 358 243 72 79 chr12 3137046 3137198 -141145291 - L2 LINE L2 0 3272 3122 1806 133 31 0 chr12 3137207 3137493 -141144996 + AluJb SINE Alu 1 295 -17 329 296 124 94 chr12 3137646 3138244 -141144245 - L2 LINE L2 -350 2964 2349 1725 187 0 13 chr12 3138297 3138612 -141143877 - AluJb SINE Alu -1 311 1 1881 150 0 7 chr12 3138636 3138942 -141143547 - AluJb SINE Alu -8 304 1 255 339 94 12 chr12 3138942 3139113 -141143376 - L2 LINE L2 -964 2350 2166 300 276 140 83 chr12 3139114 3139342 -141143147 - L2 LINE L2 -1737 1577 1363 1526 163 71 27 chr12 3139342 3139637 -141142852 + AluJo SINE Alu 1 308 -4 2125 95 14 3 chr12 3139643 3139939 -141142550 + AluSx SINE Alu 1 299 -13 1741 166 7 17 chr12 3139946 3140247 -141142242 - AluJo SINE Alu -14 298 1 300 276 140 83 chr12 3140247 3140361 -141142128 - L2 LINE L2 -1960 1354 1213 2078 120 0 0 chr12 3140410 3140711 -141141778 - AluSx SINE Alu -11 301 1 651 228 37 15 chr12 3140722 3140858 -141141631 + L2 LINE L2 3175 3313 0 2211 105 7 0 chr12 3140933 3141237 -141141252 + AluSg SINE Alu 1 306 -4 210 243 54 40 chr12 3141387 3141461 -141141028 + L2 LINE L2 1820 1894 -1420 806 134 0 0 chr12 3141468 3141587 -141140902 + FLAM_C SINE Alu 1 119 -24 342 0 0 0 chr12 3141587 3141625 -141140864 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1776 155 0 13 chr12 3141725 3142035 -141140454 + AluSx SINE Alu 1 306 -6 203 283 0 0 chr12 3142062 3142108 -141140381 - L2 LINE L2 -239 3074 3029 1525 177 3 25 chr12 3142111 3142394 -141140095 + AluJo SINE Alu 25 301 -11 1715 172 14 0 chr12 3142409 3142705 -141139784 + AluJb SINE Alu 5 304 -8 324 0 0 0 chr12 3142785 3142821 -141139668 + (TA)n Simple_repeat Simple_repeat 2 37 0 2456 50 7 0 chr12 3142821 3143124 -141139365 - AluSp SINE Alu -8 305 1 462 272 20 20 chr12 3143130 3143277 -141139212 + L1MC5 LINE L1 7763 7909 -52 189 74 0 0 chr12 3143359 3143386 -141139103 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1989 93 3 34 chr12 3143388 3143541 -141138948 - AluSx SINE Alu -30 282 126 180 0 0 0 chr12 3143541 3143561 -141138928 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1829 131 25 0 chr12 3143561 3143835 -141138654 - AluSx SINE Alu -31 281 1 1989 93 3 34 chr12 3143835 3143971 -141138518 - AluSx SINE Alu -184 128 1 344 308 156 113 chr12 3144017 3144433 -141138056 + L2 LINE L2 2836 3269 -3 2558 48 0 3 chr12 3144871 3145183 -141137306 - AluY SINE Alu 0 311 1 2040 127 3 19 chr12 3145677 3145992 -141136497 + AluJb SINE Alu 1 310 -2 207 314 0 0 chr12 3146175 3146226 -141136263 - MIR SINE MIR 0 262 212 411 194 86 11 chr12 3146258 3146351 -141136138 - L2 LINE L2 -18 3254 3155 1828 157 3 7 chr12 3146369 3146504 -141135985 + AluSx SINE Alu 1 135 -177 2013 134 3 0 chr12 3146504 3146809 -141135680 + AluSq SINE Alu 1 306 -7 1828 157 3 7 chr12 3146809 3146972 -141135517 + AluSx SINE Alu 135 298 -14 290 241 17 0 chr12 3147012 3147070 -141135419 - MIR SINE MIR -60 148 90 1707 129 4 7 chr12 3147837 3148108 -141134381 - AluSq SINE Alu -13 300 31 193 224 233 17 chr12 3148865 3148981 -141133508 - MIR SINE MIR -88 174 34 1734 124 7 7 chr12 3149271 3149546 -141132943 + AluSx SINE Alu 14 288 -24 1221 165 30 66 chr12 3151079 3151203 -141131286 + AluJo SINE Alu 1 128 -184 180 0 0 0 chr12 3151203 3151223 -141131266 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1221 165 30 66 chr12 3151223 3151401 -141131088 + AluJo SINE Alu 128 292 -20 2293 83 0 0 chr12 3151817 3152118 -141130371 - AluSc SINE Alu -8 301 1 1546 163 29 10 chr12 3152165 3152471 -141130018 - AluJb SINE Alu 0 312 1 2014 92 28 0 chr12 3152636 3152919 -141129570 - AluSp SINE Alu -12 301 11 901 126 7 0 chr12 3153117 3153252 -141129237 - AluJo SINE Alu -176 136 1 1807 112 3 70 chr12 3153540 3153847 -141128642 + AluSx SINE Alu 1 287 -20 309 51 0 0 chr12 3153847 3153886 -141128603 + (CA)n Simple_repeat Simple_repeat 2 40 0 1888 139 0 4 chr12 3153922 3154228 -141128261 + AluSg SINE Alu 1 305 0 1736 150 64 27 chr12 3155001 3155252 -141127237 - MER7A DNA MER2_type -2692 346 81 2167 105 3 3 chr12 3155252 3155548 -141126941 - AluSx SINE Alu -16 296 1 1736 150 64 27 chr12 3155548 3155626 -141126863 - MER7A DNA MER2_type -2957 81 7 209 146 91 73 chr12 3156002 3156057 -141126432 - MIR SINE MIR -85 177 122 187 278 62 104 chr12 3156104 3156248 -141126241 + MIR SINE MIR 112 249 -13 1992 108 17 3 chr12 3156330 3156618 -141125871 - AluSx SINE Alu -20 292 1 682 149 0 50 chr12 3156793 3156914 -141125575 + FLAM_C SINE Alu 3 117 -16 651 195 47 8 chr12 3156936 3157064 -141125425 - FLAM_C SINE Alu 0 133 1 244 28 0 0 chr12 3157064 3157100 -141125389 + Alu SINE Alu 285 320 0 2106 106 3 3 chr12 3157105 3157407 -141125082 + AluSq SINE Alu 1 302 -11 370 281 26 26 chr12 3157426 3157540 -141124949 - MIR SINE MIR -47 215 102 718 181 0 15 chr12 3157639 3157772 -141124717 - FLAM_A SINE Alu -11 131 1 780 198 47 41 chr12 3157779 3157951 -141124538 - MER58B DNA MER1_type -14 327 155 1622 156 11 0 chr12 3158010 3158285 -141124204 - AluJo SINE Alu -32 280 3 735 144 40 87 chr12 3158286 3158372 -141124117 - MER58B DNA MER1_type -176 165 89 2228 86 3 0 chr12 3158372 3158673 -141123816 + AluSp SINE Alu 1 302 -11 735 144 40 87 chr12 3158673 3158759 -141123730 - MER58B DNA MER1_type -252 89 1 2461 71 0 0 chr12 3158920 3159231 -141123258 + AluY SINE Alu 1 311 0 1848 121 10 33 chr12 3159244 3159549 -141122940 + AluSx SINE Alu 4 301 -11 1396 161 74 18 chr12 3160030 3160315 -141122174 - AluJb SINE Alu -11 301 1 446 209 0 0 chr12 3160318 3160409 -141122080 - L1ME LINE L1 -727 5437 5347 948 133 42 6 chr12 3160435 3160600 -141121889 - AluJb SINE Alu -22 290 120 180 0 0 0 chr12 3160601 3160621 -141121868 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 263 120 0 40 chr12 3160621 3160671 -141121818 - FLAM_A SINE Alu 0 133 86 1934 126 0 3 chr12 3160682 3160991 -141121498 - AluSx SINE Alu 0 308 1 742 210 70 0 chr12 3160991 3161177 -141121312 - L1ME LINE L1 -821 5325 5127 2033 132 0 0 chr12 3162173 3162468 -141120021 - AluSx SINE Alu -15 297 3 869 210 46 67 chr12 3162570 3162589 -141119900 - L1MD3 LINE L1 0 8042 8024 2306 87 3 0 chr12 3162589 3162900 -141119589 + AluSp SINE Alu 1 312 -1 869 210 46 67 chr12 3162900 3163080 -141119409 - L1MD3 LINE L1 -18 8024 7832 2181 93 0 13 chr12 3163080 3163390 -141119099 - AluSg SINE Alu -4 306 1 869 210 46 67 chr12 3163390 3163527 -141118962 - L1MD3 LINE L1 -210 7832 7694 801 191 0 0 chr12 3163663 3163810 -141118679 - FRAM SINE Alu -29 147 1 1818 96 75 21 chr12 3164126 3164406 -141118083 + AluSx SINE Alu 1 295 -17 2278 88 0 0 chr12 3164496 3164792 -141117697 - AluSc SINE Alu -13 296 1 24 0 0 0 chr12 3164836 3164860 -141117629 + AT_rich Low_complexity Low_complexity 1 24 0 522 158 0 0 chr12 3165259 3165341 -141117148 + AluSg/x SINE Alu 209 290 -19 1983 113 3 3 chr12 3165341 3165633 -141116856 - AluSg SINE Alu -14 296 5 2041 112 3 13 chr12 3165633 3165937 -141116552 - AluSx SINE Alu -11 301 1 25 0 0 0 chr12 3165937 3165962 -141116527 + AT_rich Low_complexity Low_complexity 1 25 0 1942 95 0 18 chr12 3165964 3166263 -141116226 + AluSq SINE Alu 23 313 0 2076 114 0 10 chr12 3166364 3166499 -141115990 + AluSx SINE Alu 1 136 -176 1897 117 10 26 chr12 3166499 3166807 -141115682 + AluSc SINE Alu 1 303 -6 2076 114 0 10 chr12 3166807 3166970 -141115519 + AluSx SINE Alu 136 296 -16 1662 128 40 10 chr12 3167734 3168030 -141114459 - AluSg SINE Alu -5 305 1 21 0 0 0 chr12 3168318 3168339 -141114150 + AT_rich Low_complexity Low_complexity 1 21 0 387 349 27 7 chr12 3168416 3168562 -141113927 + MIR SINE MIR 109 257 -5 1920 71 68 11 chr12 3169319 3169599 -141112890 + AluY SINE Alu 1 296 -15 339 359 46 8 chr12 3169649 3169780 -141112709 + L2 LINE L2 3136 3271 -1 2215 68 0 42 chr12 3170665 3170973 -141111516 - AluY SINE Alu -16 295 1 387 0 0 0 chr12 3170973 3171016 -141111473 + (T)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chr12 3171083 3171104 -141111385 + AT_rich Low_complexity Low_complexity 1 21 0 629 206 0 53 chr12 3171155 3171286 -141111203 + FLAM_A SINE Alu 5 128 -5 516 290 41 26 chr12 3171415 3171570 -141110919 + MIR3 SINE MIR 2 162 -46 697 62 21 0 chr12 3172275 3172371 -141110118 - AluSc SINE Alu -4 305 208 875 94 16 8 chr12 3172380 3172508 -141109981 - L1M4 LINE L1 -656 5522 5394 303 28 0 0 chr12 3172510 3172546 -141109943 + (TG)n Simple_repeat Simple_repeat 1 36 0 1679 166 0 50 chr12 3172552 3172872 -141109617 - AluJo SINE Alu -8 304 1 362 230 74 67 chr12 3172872 3172907 -141109582 - L1M4 LINE L1 -1109 5037 5004 2243 103 0 0 chr12 3172907 3173217 -141109272 - AluSg SINE Alu 0 310 1 362 230 74 67 chr12 3173217 3173236 -141109253 - L1M4 LINE L1 -1142 5004 4987 1417 94 18 101 chr12 3173236 3173431 -141109058 - L1MA4 LINE L1 -11 6289 6122 2286 93 3 0 chr12 3173431 3173732 -141108757 - AluSp SINE Alu -11 302 1 1417 94 18 101 chr12 3173732 3173812 -141108677 - L1MA4 LINE L1 -178 6122 6037 362 230 74 67 chr12 3173812 3173891 -141108598 - L1M4 LINE L1 -1159 4987 4902 1923 147 0 0 chr12 3173947 3174240 -141108249 - AluSx SINE Alu -18 294 2 1927 127 0 7 chr12 3174291 3174598 -141107891 - AluSx SINE Alu 0 305 1 2212 87 0 22 chr12 3174841 3175152 -141107337 - AluSc SINE Alu -5 304 1 1842 112 47 4 chr12 3175327 3175605 -141106884 - AluSx SINE Alu -17 295 6 1701 100 0 0 chr12 3176563 3176793 -141105696 + AluSg/x SINE Alu 66 295 -17 2345 71 0 0 chr12 3176904 3177200 -141105289 + AluY SINE Alu 1 296 -15 1271 112 0 21 chr12 3177217 3177405 -141105084 + AluSq SINE Alu 106 289 -24 2176 83 13 0 chr12 3177420 3177720 -141104769 - AluSx SINE Alu -8 304 1 2152 99 3 0 chr12 3177856 3178148 -141104341 - AluSp SINE Alu -20 293 1 2093 99 3 23 chr12 3178198 3178500 -141103989 - AluSx SINE Alu -16 296 1 1807 157 7 0 chr12 3179536 3179835 -141102654 + AluJb SINE Alu 1 301 -11 312 169 143 13 chr12 3179911 3179988 -141102501 + MIR SINE MIR 100 186 -76 2175 80 3 10 chr12 3180448 3180748 -141101741 - AluSq SINE Alu -14 299 2 1755 178 3 0 chr12 3181110 3181403 -141101086 + AluJo SINE Alu 1 294 -18 2342 53 0 20 chr12 3182164 3182467 -141100022 - AluY SINE Alu -14 297 1 198 246 66 33 chr12 3182471 3182532 -141099957 - MIR SINE MIR -86 176 114 192 291 0 36 chr12 3182534 3182589 -141099900 - L2 LINE L2 -12 3301 3249 1952 111 36 13 chr12 3182681 3182987 -141099502 + AluSq SINE Alu 1 313 0 1691 162 0 30 chr12 3183000 3183303 -141099186 + AluJb SINE Alu 3 296 -16 417 317 89 85 chr12 3183319 3183704 -141098785 - L2 LINE L2 -15 3257 2875 1561 182 10 19 chr12 3183704 3184012 -141098477 + AluJo SINE Alu 1 305 -7 894 186 6 12 chr12 3184019 3184180 -141098309 + FRAM SINE Alu 4 163 -3 417 317 89 85 chr12 3184180 3184204 -141098285 - L2 LINE L2 -402 2870 2848 2165 63 31 14 chr12 3184204 3184491 -141097998 + AluY SINE Alu 1 292 -19 417 317 89 85 chr12 3184491 3184629 -141097860 - L2 LINE L2 -424 2848 2619 180 259 241 0 chr12 3184829 3184887 -141097602 - MIR SINE MIR -8 254 183 1639 132 66 11 chr12 3185527 3185799 -141096690 + AluJb SINE Alu 2 288 -24 2294 173 56 18 chr12 3185858 3185928 -141096561 - L1MB8 LINE L1 0 6178 6112 1705 150 3 19 chr12 3185928 3186235 -141096254 + AluSq SINE Alu 1 302 -11 2294 173 56 18 chr12 3186235 3186667 -141095822 - L1MB8 LINE L1 -66 6112 5657 2020 108 42 0 chr12 3186675 3186961 -141095528 - AluSg SINE Alu -12 298 1 2246 103 3 0 chr12 3187557 3187869 -141094620 + AluSp SINE Alu 1 313 0 237 91 0 68 chr12 3187920 3187964 -141094525 - L1MB4 LINE L1 0 6180 6140 2095 103 0 7 chr12 3187969 3188259 -141094230 + AluSx SINE Alu 1 288 -24 281 140 53 18 chr12 3188274 3188331 -141094158 + U7 snRNA snRNA 2 60 -3 1084 181 112 84 chr12 3188363 3188389 -141094100 - AluJo SINE Alu -7 295 271 2040 36 4 0 chr12 3188389 3188636 -141093853 + AluY SINE Alu 45 292 -19 1084 181 112 84 chr12 3188636 3188896 -141093593 - AluJo SINE Alu -31 271 1 2147 94 17 0 chr12 3188900 3189197 -141093292 - AluY SINE Alu -9 302 1 1294 154 23 0 chr12 3189206 3189426 -141093063 - L1MB4 LINE L1 -29 6151 5927 24 0 0 0 chr12 3189717 3189741 -141092748 + AT_rich Low_complexity Low_complexity 1 24 0 2327 66 0 0 chr12 3189744 3190031 -141092458 - AluY SINE Alu -24 287 1 583 311 51 8 chr12 3191110 3191345 -141091144 - MIR SINE MIR -5 257 13 2071 148 0 3 chr12 3191605 3191908 -141090581 + AluSx SINE Alu 1 302 -10 568 220 0 0 chr12 3192014 3192123 -141090366 - FLAM_A SINE Alu -33 109 1 2496 84 3 0 chr12 3192241 3192549 -141089940 - AluY SINE Alu -2 309 1 189 107 0 0 chr12 3192949 3192977 -141089512 + (A)n Simple_repeat Simple_repeat 1 28 0 2091 141 3 0 chr12 3192977 3193276 -141089213 + AluSx SINE Alu 1 300 -12 1846 164 3 13 chr12 3193280 3193590 -141088899 + AluJo SINE Alu 6 312 0 300 282 121 77 chr12 3193962 3194302 -141088187 - L1MCa LINE L1 -5146 1280 926 243 299 91 0 chr12 3194750 3194827 -141087662 + L2 LINE L2 3229 3312 -1 1931 130 20 7 chr12 3194999 3195291 -141087198 + AluJb SINE Alu 1 296 -16 2327 92 0 10 chr12 3195293 3195596 -141086893 + AluSx SINE Alu 1 300 -12 2033 86 45 41 chr12 3195777 3196069 -141086420 + AluSp SINE Alu 1 293 -20 2151 81 37 37 chr12 3196134 3196429 -141086060 + AluSc SINE Alu 1 295 -14 2577 74 3 0 chr12 3196512 3196824 -141085665 - AluSq SINE Alu 0 313 1 1901 117 60 7 chr12 3197822 3198105 -141084384 + AluJb SINE Alu 1 298 -14 1813 149 4 18 chr12 3198280 3198561 -141083928 + AluJb SINE Alu 28 304 -8 2131 133 0 3 chr12 3200523 3200823 -141081666 + AluSx SINE Alu 1 299 -13 1818 129 92 4 chr12 3201148 3201419 -141081070 - AluSg SINE Alu -15 295 1 1275 110 0 0 chr12 3201419 3201592 -141080897 - AluSc SINE Alu -2 307 135 1667 178 31 3 chr12 3201604 3201890 -141080599 - AluJb SINE Alu -18 294 1 1904 133 61 0 chr12 3201934 3202212 -141080277 + AluSq SINE Alu 2 296 -17 2130 135 10 0 chr12 3202427 3202731 -141079758 - AluJb SINE Alu -5 307 1 2688 58 0 0 chr12 3203057 3203368 -141079121 - AluY SINE Alu 0 311 1 2258 53 88 0 chr12 3204293 3204576 -141077913 + AluY SINE Alu 2 309 -2 1864 136 16 52 chr12 3204664 3204974 -141077515 - AluJb SINE Alu -13 299 1 1810 130 44 0 chr12 3205020 3205290 -141077199 + AluJo SINE Alu 11 292 -20 2699 39 0 3 chr12 3205837 3206143 -141076346 + AluY SINE Alu 1 305 -6 2327 95 7 0 chr12 3206284 3206578 -141075911 + AluSx SINE Alu 5 300 -12 2573 52 0 16 chr12 3206714 3207024 -141075465 - AluY SINE Alu -5 306 2 723 162 143 19 chr12 3207072 3207226 -141075263 + FRAM SINE Alu 1 173 -3 451 260 101 54 chr12 3207251 3207293 -141075196 + L1MC4a LINE L1 5741 5780 -2028 1308 200 0 123 chr12 3207293 3207643 -141074846 + AluSx SINE Alu 1 307 -5 451 260 101 54 chr12 3207643 3207877 -141074612 + L1MC4a LINE L1 5780 6030 -1778 1888 174 7 0 chr12 3207920 3208219 -141074270 - AluJb SINE Alu -11 301 1 2113 130 3 0 chr12 3208277 3208584 -141073905 - AluSx SINE Alu 0 308 1 857 169 12 44 chr12 3208590 3208750 -141073739 - AluJb SINE Alu -25 287 133 530 150 242 8 chr12 3208912 3209032 -141073457 - MER3 DNA MER1_type -24 185 38 2189 142 0 0 chr12 3209032 3209343 -141073146 - AluSx SINE Alu -1 311 1 956 186 0 0 chr12 3209344 3209505 -141072984 - AluSg/x SINE Alu -15 295 135 1573 175 110 11 chr12 3210030 3210385 -141072104 - MLT1B LTR MaLR 0 390 1 1939 164 3 10 chr12 3210431 3210735 -141071754 - AluJb SINE Alu -10 302 1 212 0 36 0 chr12 3210820 3210848 -141071641 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 712 127 0 0 chr12 3210872 3210982 -141071507 + AluJb SINE Alu 185 294 -18 1140 53 8 0 chr12 3210982 3211114 -141071375 + AluSc SINE Alu 1 133 -176 2052 114 17 3 chr12 3211114 3211404 -141071085 + AluSx SINE Alu 1 294 -18 2502 81 3 0 chr12 3211406 3211716 -141070773 + AluY SINE Alu 1 311 0 990 120 0 0 chr12 3211825 3211958 -141070531 + AluSq/x SINE Alu 1 133 -180 21 0 0 0 chr12 3211960 3211981 -141070508 + AT_rich Low_complexity Low_complexity 1 21 0 1637 195 13 23 chr12 3212098 3212406 -141070083 + AluJb SINE Alu 1 305 -7 408 72 0 14 chr12 3212689 3212758 -141069731 - L1MA9 LINE L1 -5 6307 6240 547 75 88 0 chr12 3212758 3212838 -141069651 - AluY SINE Alu -24 287 201 * 699 103 28 9 chr12 3212832 3212939 -141069550 - AluSq/x SINE Alu -203 110 2 2375 72 3 3 chr12 3212943 3213234 -141069255 - AluSc SINE Alu -18 291 1 2615 50 0 0 chr12 3213234 3213531 -141068958 - AluY SINE Alu -14 297 1 198 0 0 0 chr12 3213531 3213553 -141068936 + (T)n Simple_repeat Simple_repeat 1 22 0 514 86 108 21 chr12 3213554 3213647 -141068842 - U6 snRNA snRNA -6 101 1 2347 60 0 3 chr12 3213789 3214095 -141068394 + AluY SINE Alu 1 305 0 1230 148 0 0 chr12 3214102 3214278 -141068211 + AluSp SINE Alu 137 312 -1 2454 87 3 0 chr12 3214378 3214689 -141067800 - AluSp SINE Alu -1 312 1 2214 117 0 3 chr12 3214690 3214988 -141067501 - AluSq SINE Alu -16 297 1 1881 171 0 25 chr12 3215043 3215359 -141067130 - AluJb SINE Alu 0 312 5 2373 98 10 0 chr12 3215977 3216283 -141066206 - AluSp SINE Alu -4 309 1 283 312 115 10 chr12 3216531 3216760 -141065729 + L2 LINE L2 2775 3026 -246 24 0 0 0 chr12 3216915 3216939 -141065550 + AT_rich Low_complexity Low_complexity 1 24 0 992 128 0 2 chr12 3216940 3217176 -141065313 - AluJb SINE Alu -27 285 5 547 345 39 4 chr12 3217258 3217487 -141065002 - MARNA DNA Mariner -4 582 346 253 79 0 0 chr12 3217653 3217691 -141064798 - MARNA DNA Mariner -242 344 307 207 261 0 29 chr12 3217876 3217945 -141064544 + L2 LINE L2 3140 3206 -66 229 62 42 21 chr12 3218547 3218595 -141063894 + (CCCGG)n Simple_repeat Simple_repeat 3 51 0 32 67 0 0 chr12 3218796 3218856 -141063633 + GC_rich Low_complexity Low_complexity 1 60 0 211 308 0 26 chr12 3220825 3220903 -141061586 + MIR3 SINE MIR 4 79 -129 210 314 0 0 chr12 3221165 3221216 -141061273 - L2 LINE L2 -5 3308 3258 438 228 0 63 chr12 3221386 3221400 -141061089 - MIR3 SINE MIR -47 161 148 1736 71 141 31 chr12 3221400 3221572 -141060917 - AluSx SINE Alu 0 333 181 492 95 0 0 chr12 3221572 3221656 -141060833 + (TA)n Simple_repeat Simple_repeat 2 85 0 2283 101 3 0 chr12 3221656 3221943 -141060546 - AluSp SINE Alu -25 288 1 1736 71 141 31 chr12 3221943 3222074 -141060415 - AluSx SINE Alu -151 182 1 438 228 0 63 chr12 3222074 3222185 -141060304 - MIR3 SINE MIR -60 148 43 2267 101 0 49 chr12 3223756 3224082 -141058407 - AluSp SINE Alu -3 310 1 1769 166 23 26 chr12 3224461 3224768 -141057721 - AluJo SINE Alu -6 306 1 2251 60 32 7 chr12 3224869 3225152 -141057337 - AluY SINE Alu -21 290 1 27 29 0 0 chr12 3225152 3225186 -141057303 + AT_rich Low_complexity Low_complexity 1 34 0 849 168 8 0 chr12 3225189 3225320 -141057169 - AluJb SINE Alu -31 281 150 335 319 84 37 chr12 3225457 3225648 -141056841 + L3 LINE CR1 438 637 -940 2286 111 7 7 chr12 3225712 3226018 -141056471 - AluSg SINE Alu -3 307 2 2339 105 0 0 chr12 3226021 3226315 -141056174 - AluSx SINE Alu -18 294 1 270 267 56 11 chr12 3226339 3226429 -141056060 + L3 LINE CR1 715 808 -769 391 267 170 30 chr12 3226443 3226814 -141055675 - L1ME4a LINE L1 -15 6106 5684 409 280 30 30 chr12 3226823 3226955 -141055534 + L3 LINE CR1 794 925 -652 229 302 62 21 chr12 3226973 3227069 -141055420 - MIR SINE MIR -6 256 157 2485 83 3 0 chr12 3227392 3227694 -141054795 - AluSp SINE Alu -10 303 1 1080 138 16 122 chr12 3227694 3227948 -141054541 - AluJo SINE Alu -1 311 85 185 0 40 0 chr12 3227948 3227973 -141054516 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1818 160 0 24 chr12 3227976 3228264 -141054225 - AluJo SINE Alu -31 281 1 944 221 88 48 chr12 3228426 3228756 -141053733 - MER2 DNA MER2_type -1 343 1 296 316 32 0 chr12 3228779 3228874 -141053615 + L3 LINE CR1 1477 1574 -3 213 220 0 20 chr12 3228872 3228922 -141053567 + MIR3 SINE MIR 114 162 -46 * 870 163 0 7 chr12 3229253 3229388 -141053101 + FLAM_A SINE Alu 1 134 -8 844 198 47 9 chr12 3229391 3229603 -141052886 - MER33 DNA MER1_type -83 241 22 471 231 267 15 chr12 3229605 3229800 -141052689 + MIR SINE MIR 14 257 -5 271 271 59 0 chr12 3230371 3230456 -141052033 - L2 LINE L2 -27 3286 3197 2392 60 7 20 chr12 3230740 3231083 -141051406 - AluY SINE Alu 0 311 1 2263 123 0 0 chr12 3231109 3231410 -141051079 - AluSx SINE Alu 0 312 12 1880 156 0 11 chr12 3231410 3231690 -141050799 - AluJo SINE Alu -33 279 1 2613 65 0 3 chr12 3231800 3232106 -141050383 - AluSp SINE Alu -5 308 4 746 183 83 65 chr12 3232152 3232442 -141050047 - L1ME1 LINE L1 -5 6161 5867 1318 164 44 0 chr12 3232445 3232670 -141049819 - AluJb SINE Alu -77 235 1 270 135 14 122 chr12 3232673 3232747 -141049742 - L1ME1 LINE L1 -859 5287 5222 2173 106 26 10 chr12 3233309 3233611 -141048878 - AluSx SINE Alu -5 307 1 23 33 0 0 chr12 3234370 3234400 -141048089 + AT_rich Low_complexity Low_complexity 1 30 0 2385 176 50 32 chr12 3234492 3234665 -141047824 - L1MC2 LINE L1 -5 6339 6171 2282 99 3 0 chr12 3234665 3234996 -141047493 - AluSp SINE Alu 0 332 1 2385 176 50 32 chr12 3234996 3235317 -141047172 - L1MC2 LINE L1 -173 6171 5831 2192 112 3 23 chr12 3235317 3235620 -141046869 - AluSx SINE Alu -15 297 1 2385 176 50 32 chr12 3235620 3235658 -141046831 - L1MC2 LINE L1 -513 5831 5795 375 351 8 0 chr12 3235670 3235801 -141046688 - MIR SINE MIR -55 153 22 218 319 97 43 chr12 3236378 3236585 -141045904 - MIR SINE MIR -32 230 13 236 243 14 0 chr12 3236595 3236669 -141045820 + CT-rich Low_complexity Low_complexity 2 76 0 295 308 96 25 chr12 3236840 3237038 -141045451 - MIR SINE MIR -34 228 17 2007 165 27 87 chr12 3237519 3237685 -141044804 - L1MB3 LINE L1 -9 6174 6000 1898 118 34 34 chr12 3237685 3238011 -141044478 - AluSx SINE Alu 0 312 2 2007 165 27 87 chr12 3238011 3238222 -141044267 - L1MB3 LINE L1 -183 6000 5830 2417 89 0 0 chr12 3238222 3238524 -141043965 - AluSx SINE Alu -10 302 1 2007 165 27 87 chr12 3238524 3238630 -141043859 - L1MB3 LINE L1 -353 5830 5719 1208 212 62 50 chr12 3238650 3238989 -141043500 + MER82 DNA MER2_type 311 653 0 619 189 114 0 chr12 3239024 3239156 -141043333 - MSTD LTR MaLR -249 147 1 187 298 0 0 chr12 3239161 3239208 -141043281 + L2 LINE L2 3262 3308 -5 388 222 67 0 chr12 3239397 3239487 -141043002 + MIR SINE MIR 53 148 -60 2302 114 0 0 chr12 3239759 3240058 -141042431 + AluSx SINE Alu 1 299 -13 473 123 37 0 chr12 3240088 3240169 -141042320 + AluS SINE Alu 2 85 -227 369 339 62 0 chr12 3240241 3240418 -141042071 + MIR SINE MIR 57 244 -18 198 248 0 119 chr12 3240847 3240956 -141041533 + L2 LINE L2 3142 3237 -76 21 57 0 0 chr12 3242465 3242500 -141039989 + AT_rich Low_complexity Low_complexity 1 35 0 442 311 43 24 chr12 3242753 3242917 -141039572 - MIR3 SINE MIR -8 200 34 396 285 182 31 chr12 3243094 3243413 -141039076 - L2 LINE L2 -7 3265 2899 211 360 182 11 chr12 3243558 3243822 -141038667 - L2 LINE L2 -542 2772 2464 3209 113 26 85 chr12 3243824 3244426 -141038063 - Tigger3(Golem) DNA MER2_type 0 3029 2466 2279 78 0 3 chr12 3244426 3244720 -141037769 + AluY SINE Alu 16 308 -3 3209 113 26 85 chr12 3244720 3244762 -141037727 - Tigger3(Golem) DNA MER2_type -563 2466 2423 272 217 0 12 chr12 3244923 3245006 -141037483 + G-rich Low_complexity Low_complexity 5 86 0 284 279 7 7 chr12 3245028 3245178 -141037311 + G-rich Low_complexity Low_complexity 1 150 0 2234 79 3 10 chr12 3245271 3245588 -141036901 + AluSx SINE Alu 1 315 0 310 211 53 0 chr12 3245595 3245690 -141036799 - L1M4 LINE L1 -1554 4592 4493 3174 198 43 23 chr12 3245692 3245718 -141036771 + MER21B LTR ERV1 1 25 -838 2166 70 37 20 chr12 3245718 3246016 -141036473 + AluSq SINE Alu 1 303 -10 3174 198 43 23 chr12 3246016 3246647 -141035842 + MER21B LTR ERV1 25 671 -192 488 161 0 25 chr12 3246647 3246728 -141035761 - AluJ/FLAM SINE Alu -232 80 2 608 268 86 67 chr12 3246759 3246923 -141035566 - L1MEd LINE L1 -4715 1595 1436 1974 134 0 3 chr12 3246923 3247222 -141035267 - AluSx SINE Alu -9 303 6 608 268 86 67 chr12 3247222 3247774 -141034715 - L1MEd LINE L1 -4874 1436 826 371 366 114 25 chr12 3247778 3247947 -141034542 - L1MEd LINE L1 -5526 593 440 2079 121 16 0 chr12 3247947 3248253 -141034236 - AluSx SINE Alu -1 311 1 371 366 114 25 chr12 3248253 3248400 -141034089 - L1MEd LINE L1 -5679 440 249 1430 164 53 49 chr12 3248405 3248709 -141033780 + AluJo SINE Alu 1 305 -7 226 272 0 25 chr12 3248758 3248839 -141033650 - L1MEd LINE L1 -6037 82 4 1996 141 0 10 chr12 3248867 3249166 -141033323 + AluSx SINE Alu 1 296 -16 238 296 47 7 chr12 3249337 3249462 -141033027 + MIR SINE MIR 20 152 -56 2315 77 0 0 chr12 3249503 3249802 -141032687 - AluSx SINE Alu -13 299 1 1072 227 36 0 chr12 3250584 3250831 -141031658 - L1MB2 LINE L1 -2 6169 5914 554 128 0 23 chr12 3250847 3250933 -141031556 - AluJ/FLAM SINE Alu -227 85 2 1859 155 0 22 chr12 3250944 3251261 -141031228 - AluJb SINE Alu -2 310 1 1614 185 42 5 chr12 3251262 3251584 -141030905 - L1MB2 LINE L1 -222 5949 5559 2070 87 0 4 chr12 3251584 3251859 -141030630 - AluSx SINE Alu -38 274 1 1614 185 42 5 chr12 3251859 3251898 -141030591 - L1MB2 LINE L1 -612 5559 5523 190 366 12 0 chr12 3251996 3252078 -141030411 - MIR3 SINE MIR -41 167 85 214 241 52 0 chr12 3252852 3252910 -141029579 - L2 LINE L2 0 3272 3212 1670 169 0 22 chr12 3253204 3253523 -141028966 + AluJo SINE Alu 1 312 0 1070 134 0 12 chr12 3253864 3253879 -141028610 - AluSg/x SINE Alu -14 296 282 2167 106 3 6 chr12 3253879 3254191 -141028298 - AluSp SINE Alu 0 313 3 192 40 0 0 chr12 3254191 3254216 -141028273 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 1070 134 0 12 chr12 3254216 3254370 -141028119 - AluSg/x SINE Alu -26 284 128 857 237 72 47 chr12 3254434 3254713 -141027776 - MLT1J LTR MaLR 0 511 226 2269 164 29 40 chr12 3255303 3255748 -141026741 - L1MB3 LINE L1 -10 6173 5734 295 295 59 23 chr12 3256114 3256289 -141026200 - MIR3 SINE MIR -62 146 12 2367 162 52 0 chr12 3257734 3258141 -141024348 - MSTC LTR MaLR 0 428 1 230 208 16 70 chr12 3258263 3258355 -141024134 - MIR SINE MIR -95 113 32 458 185 56 9 chr12 3258569 3258677 -141023812 + MIR SINE MIR 52 164 -98 4159 146 27 52 chr12 3258703 3258971 -141023518 - L1MB4 LINE L1 -2 6178 5905 2214 83 0 23 chr12 3258971 3259272 -141023217 + AluSg SINE Alu 1 294 -16 4159 146 27 52 chr12 3259272 3259301 -141023188 - L1MB4 LINE L1 -275 5905 5877 1929 102 21 25 chr12 3259301 3259586 -141022903 + AluSx SINE Alu 12 295 -17 4159 146 27 52 chr12 3259586 3260115 -141022374 - L1MB4 LINE L1 -303 5877 5372 268 274 113 28 chr12 3261832 3261938 -141020551 + MIR3 SINE MIR 72 186 -22 484 293 116 0 chr12 3262001 3262165 -141020324 + MIR SINE MIR 26 208 -54 1935 162 21 60 chr12 3262548 3262767 -141019722 + L1MA7 LINE L1 5844 6039 -252 1551 158 3 100 chr12 3262767 3262966 -141019523 - AluJo SINE Alu -4 308 154 2306 87 0 10 chr12 3262966 3263278 -141019211 - AluY SINE Alu 0 311 3 1551 158 3 100 chr12 3263278 3263419 -141019070 - AluJo SINE Alu -158 154 1 1935 162 21 60 chr12 3263419 3263631 -141018858 + L1MA7 LINE L1 6039 6258 -33 1340 167 21 17 chr12 3263631 3263864 -141018625 + MER46A DNA MER2_type 1 234 -2 2128 99 36 0 chr12 3263893 3264195 -141018294 + AluSp SINE Alu 1 313 0 2059 113 10 7 chr12 3264225 3264527 -141017962 + AluSx SINE Alu 1 303 -9 514 193 0 0 chr12 3264972 3265060 -141017429 + MER69A DNA AcHobo 3 90 -87 627 237 0 7 chr12 3265061 3265196 -141017293 - L1MA10 LINE L1 -12 6322 6189 343 232 50 10 chr12 3265197 3265296 -141017193 + MER69A DNA AcHobo 75 177 0 900 260 153 41 chr12 3265459 3266182 -141016307 - L2 LINE L2 -2 3311 2497 216 367 22 43 chr12 3266192 3266331 -141016158 - L2 LINE L2 -51 3221 3086 2299 89 0 9 chr12 3266627 3266942 -141015547 + AluSx SINE Alu 1 312 0 2143 117 0 3 chr12 3268706 3269013 -141013476 - AluSq SINE Alu -7 306 1 2231 113 0 0 chr12 3269145 3269447 -141013042 - AluSx SINE Alu -10 302 1 1425 203 10 7 chr12 3270432 3270733 -141011756 - AluJo SINE Alu -10 302 1 21 0 0 0 chr12 3270740 3270761 -141011728 + AT_rich Low_complexity Low_complexity 1 21 0 2158 88 18 0 chr12 3270938 3271222 -141011267 + AluSx SINE Alu 1 289 -23 613 161 194 0 chr12 3271243 3271367 -141011122 + FAM SINE Alu 16 163 -22 242 347 13 0 chr12 3271369 3271444 -141011045 + MIR3 SINE MIR 126 201 -7 423 254 51 14 chr12 3272041 3272179 -141010310 + MIR3 SINE MIR 37 179 -29 817 146 36 0 chr12 3273137 3273274 -141009215 - AluJb SINE Alu -7 305 164 580 179 60 0 chr12 3273382 3273499 -141008990 + AluJo SINE Alu 5 128 -174 1677 189 0 0 chr12 3273513 3273809 -141008680 - AluJb SINE Alu -16 296 1 998 190 18 0 chr12 3273940 3274103 -141008386 + AluJo SINE Alu 137 302 0 195 359 13 0 chr12 3274511 3274589 -141007900 - L2 LINE L2 -8 3264 3186 294 323 49 0 chr12 3274649 3274776 -141007713 - MIR SINE MIR -67 141 33 21 0 0 0 chr12 3274974 3274995 -141007494 + GC_rich Low_complexity Low_complexity 1 21 0 186 219 24 0 chr12 3275292 3275333 -141007156 - MIR SINE MIR -118 144 103 270 303 15 38 chr12 3277608 3277740 -141004749 - L2 LINE L2 -1 3312 3184 207 270 79 67 chr12 3277720 3277809 -141004680 + L2 LINE L2 3144 3233 -80 * 267 289 19 19 chr12 3278357 3278461 -141004028 + CT-rich Low_complexity Low_complexity 1 104 0 2177 114 0 3 chr12 3278786 3279092 -141003397 - AluSx SINE Alu -7 305 1 357 269 83 40 chr12 3279165 3279317 -141003172 - MIR SINE MIR -58 150 6 1845 113 17 26 chr12 3280987 3281289 -141001200 + AluSg SINE Alu 1 299 -11 913 175 48 137 chr12 3281302 3281639 -141000850 + MLT1A1 LTR MaLR 1 307 -58 1758 249 87 96 chr12 3281920 3281997 -141000492 - HAL1 LINE L1 -6 2501 2425 2003 104 7 23 chr12 3281997 3282305 -141000184 + AluSg SINE Alu 1 303 -7 1758 249 87 96 chr12 3282305 3282578 -140999911 - HAL1 LINE L1 -82 2425 2151 2028 35 24 12 chr12 3282578 3282832 -140999657 - AluY SINE Alu -19 292 36 1758 249 87 96 chr12 3282832 3282883 -140999606 - HAL1 LINE L1 -356 2151 2101 1722 157 61 0 chr12 3282883 3283176 -140999313 + AluJb SINE Alu 1 311 -1 1758 249 87 96 chr12 3283176 3283433 -140999056 - HAL1 LINE L1 -406 2101 1843 2110 110 10 0 chr12 3283433 3283733 -140998756 - AluSx SINE Alu -9 303 1 1758 249 87 96 chr12 3283733 3284016 -140998473 - HAL1 LINE L1 -664 1843 1559 1850 151 0 29 chr12 3284016 3284328 -140998161 - AluSx SINE Alu -9 303 1 1758 249 87 96 chr12 3284328 3284792 -140997697 - HAL1 LINE L1 -948 1559 1105 632 279 109 20 chr12 3284793 3285040 -140997449 - MLT1J LTR MaLR 0 511 243 1656 98 114 4 chr12 3285503 3285757 -140996732 - AluSq SINE Alu -31 282 1 421 282 60 0 chr12 3285762 3285879 -140996610 - HAL1 LINE L1 -1558 949 826 786 164 15 15 chr12 3285942 3286076 -140996413 + AluJo SINE Alu 2 135 -177 1698 188 0 0 chr12 3286076 3286368 -140996121 + AluSx SINE Alu 1 292 -20 3782 151 71 50 chr12 3286368 3287132 -140995357 - L1MB8 LINE L1 -57 6121 5374 1866 155 7 0 chr12 3287132 3287422 -140995067 - AluSx SINE Alu -20 292 1 3782 151 71 50 chr12 3287422 3287556 -140994933 - L1MB8 LINE L1 -804 5374 5244 1741 141 19 48 chr12 3287556 3287725 -140994764 - AluJo SINE Alu -8 304 147 2473 53 0 3 chr12 3287725 3288029 -140994460 - AluY SINE Alu -8 303 1 1741 141 19 48 chr12 3288029 3288172 -140994317 - AluJo SINE Alu -165 147 1 3782 151 71 50 chr12 3288172 3288277 -140994212 - L1MB8 LINE L1 -934 5244 5093 688 299 31 63 chr12 3288281 3288662 -140993827 - HAL1 LINE L1 -1703 804 436 801 181 0 0 chr12 3288690 3288828 -140993661 - FLAM_C SINE Alu -5 138 1 266 306 56 21 chr12 3289071 3289215 -140993274 - HAL1 LINE L1 -2358 149 1 190 324 46 56 chr12 3289964 3290072 -140992417 - MIR SINE MIR -79 183 77 482 289 64 46 chr12 3290155 3290373 -140992116 - MIR SINE MIR -40 222 1 262 304 56 0 chr12 3290992 3291104 -140991385 + MIR SINE MIR 48 165 -43 819 139 0 0 chr12 3293144 3293259 -140989230 + AluJb SINE Alu 3 117 -195 2235 113 0 23 chr12 3293303 3293612 -140988877 + AluSx SINE Alu 1 302 -10 1998 182 7 0 chr12 3294031 3294339 -140988150 + AluJo SINE Alu 1 310 -2 210 235 44 29 chr12 3294349 3294417 -140988072 + MIR SINE MIR 36 104 -104 223 262 74 94 chr12 3296868 3297017 -140985472 - MIR3 SINE MIR -22 186 41 349 300 71 21 chr12 3297616 3297756 -140984733 - MER5B DNA MER1_type 0 178 32 682 222 86 50 chr12 3297756 3297977 -140984512 - L1MD2 LINE L1 0 6359 6131 2372 87 10 0 chr12 3298180 3298478 -140984011 - AluSx SINE Alu -11 301 1 244 203 119 76 chr12 3299979 3300097 -140982392 + MIR SINE MIR 24 146 -116 258 95 0 0 chr12 3300155 3300197 -140982292 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 572 192 295 5 chr12 3300406 3300599 -140981890 + MIR SINE MIR 14 262 0 314 184 138 0 chr12 3301744 3301831 -140980658 - MIR SINE MIR -70 192 94 238 275 25 50 chr12 3301849 3301929 -140980560 - L2 LINE L2 0 3313 3236 337 285 134 18 chr12 3301983 3302418 -140980071 - L2 LINE L2 -188 3125 2644 189 0 0 0 chr12 3302975 3302996 -140979493 + (AGGGGG)n Simple_repeat Simple_repeat 6 26 0 2510 90 0 0 chr12 3303125 3303435 -140979054 + AluSq SINE Alu 1 310 -3 207 307 67 0 chr12 3303468 3303543 -140978946 + MIR SINE MIR 70 149 -113 2031 126 48 3 chr12 3303934 3304228 -140978261 + AluJb SINE Alu 1 307 -5 796 188 0 0 chr12 3305325 3305458 -140977031 - FLAM_A SINE Alu 0 133 1 1972 125 11 57 chr12 3305489 3305710 -140976779 + MER1B DNA MER1_type 1 202 -2508 2447 59 7 20 chr12 3305710 3306016 -140976473 + AluY SINE Alu 1 302 -9 1972 125 11 57 chr12 3306016 3306147 -140976342 + MER1B DNA MER1_type 202 337 0 315 309 36 52 chr12 3306722 3306916 -140975573 - L2 LINE L2 -19 3294 3104 729 179 0 8 chr12 3306957 3307091 -140975398 - FLAM_A SINE Alu -9 133 1 1900 163 3 13 chr12 3307100 3307401 -140975088 - AluJb SINE Alu -13 299 2 1205 186 18 63 chr12 3307401 3307503 -140974986 + MER58B DNA MER1_type 78 183 -2237 1990 137 27 0 chr12 3307503 3307796 -140974693 - AluJb SINE Alu -11 301 1 1205 186 18 63 chr12 3307796 3307968 -140974521 + MER58B DNA MER1_type 183 341 0 1501 302 122 7 chr12 3308133 3308874 -140973615 - HAL1 LINE L1 -1480 1027 202 406 135 11 11 chr12 3308876 3308930 -140973559 + CT-rich Low_complexity Low_complexity 2 58 -32 2249 115 0 0 chr12 3308930 3309218 -140973271 - AluSx SINE Alu -24 288 1 406 135 11 11 chr12 3309218 3309252 -140973237 + CT-rich Low_complexity Low_complexity 57 90 0 1645 169 0 4 chr12 3309288 3309543 -140972946 - AluJb SINE Alu -54 258 5 390 88 50 25 chr12 3309557 3309637 -140972852 + CT-rich Low_complexity Low_complexity 1 82 0 377 70 18 0 chr12 3309653 3309710 -140972779 + (TCCC)n Simple_repeat Simple_repeat 1 58 0 841 126 11 27 chr12 3309711 3309894 -140972595 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 257 203 43 0 chr12 3309902 3309971 -140972518 + CT-rich Low_complexity Low_complexity 6 77 0 272 170 0 21 chr12 3309972 3310019 -140972470 - Alu SINE Alu -22 280 235 256 279 113 81 chr12 3310022 3310108 -140972381 - MLT1J LTR MaLR -52 459 377 1414 199 57 4 chr12 3310108 3310389 -140972100 - AluSx SINE Alu -16 296 1 256 279 113 81 chr12 3310389 3310524 -140971965 - MLT1J LTR MaLR -134 377 231 2401 68 10 32 chr12 3310693 3311002 -140971487 + AluSp SINE Alu 1 302 -11 1280 168 44 103 chr12 3311015 3311403 -140971086 + MLT1A1 LTR MaLR 1 365 0 612 242 199 5 chr12 3311600 3311786 -140970703 - MLT1J LTR MaLR -257 254 33 2050 145 0 3 chr12 3311864 3312161 -140970328 - AluJo SINE Alu -16 296 1 1737 182 10 22 chr12 3312161 3312473 -140970016 - AluJo SINE Alu -3 309 1 2623 48 0 13 chr12 3312519 3312832 -140969657 - AluY SINE Alu -2 309 1 264 315 87 3 chr12 3312839 3312983 -140969506 - MIR SINE MIR -50 212 58 381 151 0 0 chr12 3313169 3313255 -140969234 + (CCTG)n Simple_repeat Simple_repeat 3 88 0 1311 170 0 38 chr12 3313255 3313490 -140968999 - AluJb SINE Alu -3 309 84 216 274 43 4 chr12 3313975 3314067 -140968422 - MIR SINE MIR -104 104 12 650 245 21 7 chr12 3314455 3314598 -140967891 - L2 LINE L2 -2 3311 3167 833 163 0 16 chr12 3314803 3314932 -140967557 + FLAM_C SINE Alu 1 127 -16 207 322 17 26 chr12 3315046 3315161 -140967328 + MER5A DNA MER1_type 4 117 -72 829 236 16 16 chr12 3315635 3315826 -140966663 - AluJo SINE Alu 0 312 122 189 0 0 0 chr12 3316753 3316774 -140965715 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2693 46 0 0 chr12 3316863 3317170 -140965319 + AluY SINE Alu 1 307 -4 201 74 0 0 chr12 3317399 3317426 -140965063 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 1552 158 0 0 chr12 3317437 3317665 -140964824 - AluJo SINE Alu -84 228 1 2663 42 0 7 chr12 3317674 3317984 -140964505 - AluY SINE Alu -3 308 1 332 201 163 105 chr12 3318007 3318301 -140964188 - L1MC5 LINE L1 -945 6863 6553 2342 95 7 7 chr12 3318866 3319170 -140963319 - AluSx SINE Alu -8 304 1 1821 209 150 4 chr12 3319422 3319930 -140962559 + MLT1E LTR MaLR 8 589 -4 807 336 110 44 chr12 3319946 3320876 -140961613 + L2 LINE L2 379 1389 -1925 1721 213 0 0 chr12 3320876 3321181 -140961308 - AluJb SINE Alu -7 305 1 807 336 110 44 chr12 3321181 3321303 -140961186 + L2 LINE L2 1389 1501 -1813 2527 165 53 48 chr12 3321324 3321911 -140960578 + LTR8A LTR ERV1 37 626 -101 894 170 19 94 chr12 3321905 3322037 -140960452 + LTR8 LTR ERV1 496 608 -83 * 2292 84 0 0 chr12 3322037 3322311 -140960178 + AluSx SINE Alu 25 298 -14 894 170 19 94 chr12 3322311 3322390 -140960099 + LTR8 LTR ERV1 608 691 0 326 226 189 3 chr12 3322502 3322663 -140959826 - L1ME LINE L1 -4970 1089 826 643 173 0 0 chr12 3322698 3322808 -140959681 - FLAM_A SINE Alu -10 132 23 1773 239 20 93 chr12 3322824 3323300 -140959189 - L1ME LINE L1 -5168 902 493 2255 99 3 0 chr12 3323300 3323604 -140958885 - AluSp SINE Alu 0 305 1 1773 239 20 93 chr12 3323604 3323838 -140958651 - L1ME LINE L1 -5577 493 243 3024 128 14 10 chr12 3323838 3324331 -140958158 + MER4D LTR ERV1 1 495 -408 1350 189 0 0 chr12 3324344 3324572 -140957917 + AluJb SINE Alu 85 312 0 2134 145 0 10 chr12 3324573 3324877 -140957612 + AluJb SINE Alu 1 301 -11 881 129 30 89 chr12 3324877 3325079 -140957410 + MER4E LTR ERV1 429 618 -161 2342 103 0 3 chr12 3325082 3325383 -140957106 - AluY SINE Alu -11 300 1 2261 230 116 14 chr12 3325398 3326064 -140956425 + MER50 LTR ERV1 1 734 0 1067 153 0 6 chr12 3326064 3326225 -140956264 + MER4D LTR ERV1 744 903 0 537 292 12 56 chr12 3326225 3326479 -140956010 - L1ME LINE L1 -5824 246 1 469 304 70 11 chr12 3326503 3326773 -140955716 + L2 LINE L2 1685 1970 -1344 1694 186 0 49 chr12 3326863 3327170 -140955319 - AluJo SINE Alu -20 292 1 2734 45 0 0 chr12 3327236 3327544 -140954945 - AluY SINE Alu -3 308 1 237 83 0 0 chr12 3328334 3328370 -140954119 + (CA)n Simple_repeat Simple_repeat 1 36 0 1071 195 0 0 chr12 3328528 3328713 -140953776 + MER58A DNA MER1_type 39 223 -1 363 181 71 71 chr12 3328761 3328888 -140953601 + MER53 DNA DNA 1 127 -62 23 78 0 0 chr12 3329285 3329336 -140953153 + AT_rich Low_complexity Low_complexity 1 51 0 847 129 9 0 chr12 3329346 3329462 -140953027 - FLAM_C SINE Alu -24 119 3 2403 93 3 13 chr12 3330626 3330939 -140951550 - AluSx SINE Alu 0 312 3 2351 80 7 3 chr12 3330944 3331243 -140951246 - AluSx SINE Alu -12 300 1 2189 91 51 0 chr12 3331305 3331581 -140950908 - AluSx SINE Alu -22 290 1 1013 219 32 24 chr12 3331714 3331960 -140950529 + MIR SINE MIR 13 260 -2 440 198 86 9 chr12 3332272 3332388 -140950101 + MER94 DNA DNA 10 134 0 1871 124 42 35 chr12 3332825 3333108 -140949381 - AluJb SINE Alu -27 285 1 1477 131 3 134 chr12 3333129 3333450 -140949039 + AluJo SINE Alu 33 311 -1 285 267 184 73 chr12 3333461 3333549 -140948940 - MIR SINE MIR -6 256 179 2501 77 7 0 chr12 3333549 3333849 -140948640 - AluSx SINE Alu -6 306 5 285 267 184 73 chr12 3333849 3333966 -140948523 - MIR SINE MIR -83 179 28 1463 169 61 32 chr12 3334460 3334739 -140947750 - AluJo SINE Alu -25 287 1 1832 113 21 17 chr12 3334833 3335124 -140947365 + AluJb SINE Alu 21 312 0 362 92 0 15 chr12 3335738 3335803 -140946686 + (CCCCG)n Simple_repeat Simple_repeat 3 66 0 180 0 0 0 chr12 3335845 3335865 -140946624 + (CGG)n Simple_repeat Simple_repeat 2 21 0 22 0 0 0 chr12 3335917 3335939 -140946550 + GC_rich Low_complexity Low_complexity 1 22 0 195 189 0 0 chr12 3336802 3336839 -140945650 + L2 LINE L2 3019 3055 -217 327 311 14 74 chr12 3337324 3337431 -140945058 - MIR3 SINE MIR 0 262 150 2295 101 3 0 chr12 3337431 3337727 -140944762 - AluSx SINE Alu -7 305 9 327 311 14 74 chr12 3337727 3337896 -140944593 - MIR3 SINE MIR -112 150 3 2350 125 0 0 chr12 3337905 3338218 -140944271 - AluSq SINE Alu 0 313 1 1885 141 9 58 chr12 3338220 3338546 -140943943 - AluJo SINE Alu -2 310 1 231 306 117 18 chr12 3338576 3338687 -140943802 + MIR3 SINE MIR 68 189 -19 2242 99 3 10 chr12 3338788 3339092 -140943397 - AluSg SINE Alu -7 303 2 775 167 107 9 chr12 3339092 3339274 -140943215 - L1MB2 LINE L1 -20 6163 5955 459 339 30 0 chr12 3339473 3339641 -140942848 + MIR SINE MIR 90 262 0 1417 170 78 35 chr12 3340141 3340266 -140942223 + AluJo SINE Alu 1 119 -193 351 0 0 0 chr12 3340266 3340305 -140942184 + (TG)n Simple_repeat Simple_repeat 2 40 0 225 0 0 0 chr12 3340304 3340329 -140942160 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 1417 170 78 35 chr12 3340305 3340485 -140942004 + AluJo SINE Alu 119 294 -18 230 299 58 11 chr12 3340487 3340574 -140941915 - L2 LINE L2 -49 3264 3174 226 253 80 0 chr12 3340911 3340986 -140941503 - L2 LINE L2 0 3313 3233 202 260 0 0 chr12 3341285 3341335 -140941154 + L2 LINE L2 3178 3227 -86 437 309 94 6 chr12 3341814 3341995 -140940494 - MER117 DNA MER1_type 0 197 1 186 330 11 32 chr12 3343173 3343267 -140939222 - MIR SINE MIR -66 196 105 551 190 157 0 chr12 3343578 3343699 -140938790 + AluSg SINE Alu 3 142 -168 321 285 29 44 chr12 3344065 3344202 -140938287 + MIR3 SINE MIR 52 186 -22 228 288 30 15 chr12 3345194 3345260 -140937229 - MER91C DNA MER1_type -1 189 123 1682 157 49 28 chr12 3345712 3345998 -140936491 + AluJo SINE Alu 1 292 -20 2157 120 3 3 chr12 3346002 3346293 -140936196 + AluSg SINE Alu 3 293 -17 231 224 53 13 chr12 3346296 3346372 -140936117 + MER91C DNA MER1_type 62 140 0 2620 62 0 0 chr12 3347425 3347729 -140934760 + AluY SINE Alu 1 304 -7 982 140 17 51 chr12 3348095 3348273 -140934216 + AluSg/x SINE Alu 129 300 -10 282 267 45 94 chr12 3348288 3348490 -140933999 + HAL1 LINE L1 1563 1754 -753 886 127 0 0 chr12 3348557 3348683 -140933806 + FLAM_C SINE Alu 1 126 -17 32 57 0 0 chr12 3348848 3348901 -140933588 + AT_rich Low_complexity Low_complexity 1 53 0 1312 85 0 0 chr12 3349648 3349857 -140932632 + AluY SINE Alu 121 329 0 361 305 126 23 chr12 3349977 3350279 -140932210 + L2 LINE L2 2124 2456 -858 1601 153 35 78 chr12 3350282 3350593 -140931896 + Tigger3(Golem) DNA MER2_type 1 324 -2704 2287 118 0 6 chr12 3350593 3350906 -140931583 - AluSx SINE Alu -1 311 1 1601 153 35 78 chr12 3350906 3350966 -140931523 + Tigger3(Golem) DNA MER2_type 324 2153 -875 606 269 188 43 chr12 3351100 3351520 -140930969 - MLT1H LTR MaLR -16 533 53 269 190 69 0 chr12 3354385 3354443 -140928046 + L2 LINE L2 3242 3303 -10 1890 162 3 13 chr12 3354667 3354969 -140927520 - AluJo SINE Alu -13 299 1 2268 92 7 0 chr12 3355324 3355637 -140926852 - AluSp SINE Alu 0 316 2 8512 40 10 14 chr12 3355665 3356663 -140925826 - SVA Other Other 0 1386 393 186 293 98 12 chr12 3357109 3357191 -140925298 + L2 LINE L2 3210 3298 -15 261 0 0 0 chr12 3357193 3357222 -140925267 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2366 49 17 21 chr12 3357357 3357645 -140924844 - AluY SINE Alu -2 309 23 345 292 62 9 chr12 3358807 3358920 -140923569 + MIR3 SINE MIR 87 205 -3 204 318 15 0 chr12 3359104 3359170 -140923319 + L3 LINE CR1 812 878 -699 2014 156 0 6 chr12 3359408 3359722 -140922767 - AluSx SINE Alu 0 312 1 3351 259 51 34 chr12 3359745 3360513 -140921976 - L1MEc LINE L1 -5063 1333 531 2584 50 0 10 chr12 3360513 3360816 -140921673 - AluY SINE Alu -11 300 1 3351 259 51 34 chr12 3360816 3361331 -140921158 - L1MEc LINE L1 -5865 531 27 535 321 139 29 chr12 3361681 3362127 -140920362 + L3 LINE CR1 1054 1548 -29 1665 184 3 14 chr12 3362791 3363085 -140919404 - AluJo SINE Alu -7 305 15 2598 53 0 10 chr12 3363108 3363410 -140919079 - AluY SINE Alu -12 299 1 443 167 0 10 chr12 3363414 3363515 -140918974 + L1MA7 LINE L1 6045 6153 -150 268 294 42 17 chr12 3363591 3363710 -140918779 - MIR SINE MIR -55 153 32 193 324 29 0 chr12 3364090 3364158 -140918331 - L2 LINE L2 -16 3256 3187 669 271 206 2 chr12 3364459 3364983 -140917506 - L2 LINE L2 -6 3307 2670 2176 141 0 3 chr12 3365014 3365327 -140917162 - AluJo SINE Alu 0 312 1 386 342 151 4 chr12 3365329 3365554 -140916935 - MIR SINE MIR -2 260 3 684 200 0 0 chr12 3366411 3366571 -140915918 + (CA)n Simple_repeat Simple_repeat 1 160 0 1813 170 0 3 chr12 3367170 3367477 -140915012 + AluJb SINE Alu 1 306 0 1699 233 71 99 chr12 3368934 3369623 -140912866 - HAL1 LINE L1 -839 1668 1012 2393 64 7 3 chr12 3369623 3369918 -140912571 - AluY SINE Alu -15 296 1 1699 233 71 99 chr12 3369918 3370209 -140912280 - HAL1 LINE L1 -1495 1012 715 2467 70 3 3 chr12 3370221 3370520 -140911969 + AluSq SINE Alu 2 300 -13 1193 255 184 22 chr12 3370521 3371058 -140911431 + HAL1 LINE L1 84 707 -1800 229 287 58 0 chr12 3371291 3371378 -140911111 + L2 LINE L2 3180 3271 -1 224 322 33 0 chr12 3371692 3371782 -140910707 + MIR3 SINE MIR 89 181 -27 544 307 13 42 chr12 3372041 3372279 -140910210 + MIR SINE MIR 20 250 -12 2106 118 13 26 chr12 3372310 3372616 -140909873 - AluSx SINE Alu -10 302 1 219 280 98 0 chr12 3372640 3372708 -140909781 - MIR SINE MIR -64 144 78 608 174 28 141 chr12 3372750 3372882 -140909607 - L1 LINE L1 -2711 3435 3290 2407 84 7 0 chr12 3372882 3373179 -140909310 - AluSp SINE Alu -14 299 1 608 174 28 141 chr12 3373179 3373370 -140909119 - L1 LINE L1 -2856 3290 3155 1683 188 9 31 chr12 3373370 3373689 -140908800 - AluJo SINE Alu 0 312 1 608 174 28 141 chr12 3373689 3373727 -140908762 - L1 LINE L1 -2991 3155 3114 670 265 151 12 chr12 3373754 3374078 -140908411 - L2 LINE L2 -8 3305 2937 277 289 56 106 chr12 3374712 3374794 -140907695 + L2 LINE L2 3138 3212 -60 1420 221 47 3 chr12 3374794 3375116 -140907373 - MER58B DNA MER1_type -4 337 2 277 289 56 106 chr12 3375116 3375175 -140907314 + L2 LINE L2 3212 3272 0 2209 113 27 0 chr12 3375272 3375565 -140906924 + AluSx SINE Alu 1 301 -11 3003 173 25 48 chr12 3375611 3376170 -140906319 - L1MB8 LINE L1 -10 6168 5627 1555 171 60 26 chr12 3376170 3376522 -140905967 - MLT1A1 LTR MaLR -1 364 1 3003 173 25 48 chr12 3376522 3376673 -140905816 - L1MB8 LINE L1 -551 5627 5474 433 290 34 111 chr12 3376930 3377192 -140905297 + MIR SINE MIR 9 250 -12 244 322 185 15 chr12 3377402 3377607 -140904882 - L3 LINE CR1 -223 1354 1115 455 293 105 6 chr12 3378710 3378891 -140903598 + MIR SINE MIR 45 243 -19 2416 93 7 0 chr12 3378967 3379277 -140903212 - AluSx SINE Alu 0 312 1 325 276 60 35 chr12 3380011 3380127 -140902362 - MIR SINE MIR -124 138 20 294 310 44 6 chr12 3380594 3380752 -140901737 + MIR3 SINE MIR 21 184 -24 325 274 85 13 chr12 3381671 3381824 -140900665 + MIR3 SINE MIR 23 186 -22 310 298 122 50 chr12 3381830 3381964 -140900525 - MIR SINE MIR -2 260 137 380 260 133 84 chr12 3381964 3382069 -140900420 + MER102b DNA MER1_type 3 101 -1327 2042 145 0 55 chr12 3382069 3382394 -140900095 - AluJb SINE Alu -5 307 1 380 260 133 84 chr12 3382394 3382611 -140899878 + MER102b DNA MER1_type 101 341 0 310 298 122 50 chr12 3382611 3382714 -140899775 - MIR SINE MIR -125 137 6 2316 54 54 0 chr12 3382771 3383048 -140899441 + AluY SINE Alu 1 292 -19 725 191 253 18 chr12 3383049 3383274 -140899215 - AluSg1 SINE Alu -30 279 2 512 281 41 12 chr12 3384357 3384528 -140897961 - MIR SINE MIR -3 259 84 425 272 44 34 chr12 3385061 3385149 -140897340 + L1ME4a LINE L1 5698 5784 -337 1966 94 87 11 chr12 3385149 3385426 -140897063 - AluSp SINE Alu -15 298 1 425 272 44 34 chr12 3385426 3385492 -140896997 + L1ME4a LINE L1 5784 5857 -264 1972 159 0 16 chr12 3385492 3385800 -140896689 + AluJo SINE Alu 1 303 -9 425 272 44 34 chr12 3385800 3385850 -140896639 + L1ME4a LINE L1 5857 5905 -216 329 256 128 17 chr12 3385868 3385985 -140896504 + L1ME4a LINE L1 5964 6093 -28 23 0 0 0 chr12 3386205 3386228 -140896261 + AT_rich Low_complexity Low_complexity 1 23 0 426 266 179 6 chr12 3386751 3386924 -140895565 + MIR SINE MIR 11 213 -49 1370 151 18 109 chr12 3386944 3387272 -140895217 - Tigger3b DNA MER2_type 0 1231 935 667 106 0 53 chr12 3387272 3387343 -140895146 - MSTA LTR MaLR 0 428 364 1630 158 102 11 chr12 3387343 3387628 -140894861 + AluJo SINE Alu 1 311 -1 667 106 0 53 chr12 3387628 3387669 -140894820 - MSTA LTR MaLR -64 364 322 591 141 11 0 chr12 3387679 3387771 -140894718 - FLAM_A SINE Alu -30 112 20 29 0 0 0 chr12 3387804 3387833 -140894656 + AT_rich Low_complexity Low_complexity 1 29 0 856 96 43 0 chr12 3387835 3387950 -140894539 + FLAM_C SINE Alu 1 120 -23 1264 118 50 57 chr12 3387950 3388077 -140894412 - Tigger3b DNA MER2_type -2565 463 337 2478 71 0 0 chr12 3388077 3388371 -140894118 - AluY SINE Alu -17 294 1 1264 118 50 57 chr12 3388371 3388505 -140893984 - Tigger3b DNA MER2_type -2691 337 204 592 149 0 47 chr12 3388515 3388622 -140893867 - FLAM_A SINE Alu -21 121 20 1136 191 15 0 chr12 3388648 3388847 -140893642 - Tigger3b DNA MER2_type -1026 205 4 730 142 18 0 chr12 3389161 3389274 -140893215 + FLAM_A SINE Alu 1 115 -18 2255 159 49 2 chr12 3389477 3389923 -140892566 - L1MB3 LINE L1 -2 6181 5715 729 329 29 0 chr12 3390189 3390435 -140892054 + MIR SINE MIR 4 256 -6 671 266 22 5 chr12 3391315 3391499 -140890990 + MIR SINE MIR 73 259 -3 309 287 167 6 chr12 3391859 3392033 -140890456 - MIR SINE MIR -6 256 55 441 313 60 20 chr12 3392120 3392321 -140890168 + MIR SINE MIR 53 261 -1 3808 178 30 14 chr12 3392476 3393248 -140889241 - L1MB5 LINE L1 0 6174 5391 204 383 57 19 chr12 3393252 3393461 -140889028 - L3 LINE CR1 -375 1202 986 22 0 0 0 chr12 3394092 3394114 -140888375 + AT_rich Low_complexity Low_complexity 1 22 0 219 280 187 0 chr12 3394646 3394721 -140887768 + MIR SINE MIR 94 182 -80 418 276 115 29 chr12 3395058 3395232 -140887257 - MIR3 SINE MIR 0 208 20 1708 156 0 11 chr12 3395819 3396102 -140886387 - AluJo SINE Alu -32 280 1 210 179 0 54 chr12 3396975 3397031 -140885458 - MIR SINE MIR -182 80 28 298 282 29 10 chr12 3397118 3397221 -140885268 - MIR SINE MIR -55 207 103 200 250 36 12 chr12 3398691 3398775 -140883714 + MIR SINE MIR 39 124 -84 1203 144 24 124 chr12 3399178 3399476 -140883013 - AluJb SINE Alu -10 302 35 1655 145 81 7 chr12 3400281 3400564 -140881925 - AluJb SINE Alu -8 304 1 203 195 24 0 chr12 3400840 3400881 -140881608 + MER5C DNA MER1_type 4 45 -279 383 258 172 8 chr12 3402727 3402855 -140879634 - MIR SINE MIR -33 229 81 3570 189 38 136 chr12 3403481 3404797 -140877692 - L1MC4a LINE L1 -87 7721 6545 248 0 31 0 chr12 3404798 3404830 -140877659 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1972 116 14 0 chr12 3404833 3405117 -140877372 - AluSx SINE Alu -24 288 1 771 268 91 25 chr12 3405142 3405385 -140877104 + MLT1C LTR MaLR 200 458 -9 464 261 29 7 chr12 3406762 3406900 -140875589 + MIR3 SINE MIR 65 205 -3 309 257 0 73 chr12 3407184 3407293 -140875196 - L2 LINE L2 -58 3255 3155 431 305 79 6 chr12 3407593 3407757 -140874732 + MIR SINE MIR 31 206 -56 813 238 11 32 chr12 3408296 3408485 -140874004 + MER3 DNA MER1_type 23 207 -2 306 235 29 0 chr12 3408871 3408939 -140873550 - MIR3 SINE MIR -24 184 115 481 295 8 14 chr12 3410424 3410592 -140871897 + MER5A DNA MER1_type 1 179 -10 357 336 69 23 chr12 3410684 3410901 -140871588 - L2 LINE L2 0 3272 3046 254 231 0 0 chr12 3411006 3411058 -140871431 - MIR SINE MIR -84 124 73 277 279 0 0 chr12 3411869 3411937 -140870552 + (TG)n Simple_repeat Simple_repeat 1 68 0 1181 85 0 0 chr12 3412503 3412656 -140869833 + AluSg/x SINE Alu 147 299 -13 2190 108 0 7 chr12 3413297 3413604 -140868885 - AluSx SINE Alu -7 305 1 189 0 0 0 chr12 3413784 3413805 -140868684 + (TGG)n Simple_repeat Simple_repeat 3 23 0 210 203 0 34 chr12 3414409 3414468 -140868021 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 216 67 0 0 chr12 3414563 3414593 -140867896 + (TG)n Simple_repeat Simple_repeat 1 30 0 291 28 0 0 chr12 3414727 3414763 -140867726 + (TG)n Simple_repeat Simple_repeat 1 36 0 183 156 0 0 chr12 3415289 3415321 -140867168 + CT-rich Low_complexity Low_complexity 1 32 0 644 280 18 0 chr12 3415739 3415907 -140866582 - Charlie8 DNA MER1_type -2246 171 1 875 196 31 18 chr12 3416169 3416332 -140866157 + FRAM SINE Alu 1 165 -11 2144 108 0 19 chr12 3417210 3417524 -140864965 - AluSx SINE Alu -4 308 1 2357 60 0 7 chr12 3417819 3418117 -140864372 - AluY SINE Alu -15 296 1 398 283 215 16 chr12 3418132 3418323 -140864166 + MIR SINE MIR 18 246 -16 222 315 111 9 chr12 3418350 3418458 -140864031 - MIR SINE MIR -70 138 20 2285 89 0 0 chr12 3419169 3419460 -140863029 + AluSg SINE Alu 12 302 -8 518 246 42 36 chr12 3419904 3420071 -140862418 + MIR3 SINE MIR 5 172 -36 1966 135 47 75 chr12 3420137 3420301 -140862188 + MLT1B LTR MaLR 1 168 -222 710 203 0 0 chr12 3420301 3420429 -140862060 + FLAM_C SINE Alu 1 128 -5 1966 135 47 75 chr12 3420429 3420665 -140861824 + MLT1B LTR MaLR 168 390 0 3905 152 47 46 chr12 3420676 3421654 -140860835 - L1MB8 LINE L1 -50 6128 5159 2142 95 3 7 chr12 3421654 3421949 -140860540 + AluSp SINE Alu 1 294 -19 3905 152 47 46 chr12 3421949 3422206 -140860283 - L1MB8 LINE L1 -1019 5159 4904 2093 132 80 66 chr12 3422446 3422489 -140860000 + MSTB1 LTR MaLR 1 42 -390 426 39 0 0 chr12 3422489 3422541 -140859948 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 817 204 7 7 chr12 3422542 3422694 -140859795 - FRAM SINE Alu -12 154 3 2093 132 80 66 chr12 3422694 3423074 -140859415 + MSTB1 LTR MaLR 41 432 0 248 244 179 0 chr12 3423813 3423891 -140858598 + L2 LINE L2 3222 3313 0 206 333 0 0 chr12 3425070 3425124 -140857365 + L2 LINE L2 3219 3272 0 358 338 14 0 chr12 3425381 3425529 -140856960 - MER117 DNA MER1_type -27 170 21 341 286 184 24 chr12 3425546 3425714 -140856775 + MIR3 SINE MIR 14 208 0 222 171 0 0 chr12 3426297 3426338 -140856151 - MIR SINE MIR -113 149 109 251 241 63 0 chr12 3427104 3427183 -140855306 - MIR3 SINE MIR 0 208 125 1102 244 74 36 chr12 3427291 3427501 -140854988 - L1ME3A LINE L1 -1 6169 5938 2376 90 0 0 chr12 3427501 3427813 -140854676 - AluSx SINE Alu 0 312 1 1102 244 74 36 chr12 3427813 3427967 -140854522 - L1ME3A LINE L1 -232 5938 5791 247 145 177 16 chr12 3427942 3428004 -140854485 - L1P2 LINE L1 -692 5463 5392 * 308 305 58 58 chr12 3430107 3430281 -140852208 + MIR SINE MIR 48 221 -41 569 231 137 40 chr12 3430675 3430916 -140851573 + MIR SINE MIR 3 257 -5 189 313 90 0 chr12 3431626 3431693 -140850796 + L2 LINE L2 2303 2375 -939 271 333 16 32 chr12 3431714 3431837 -140850652 + L2 LINE L2 2539 2659 -655 407 262 100 57 chr12 3431847 3432076 -140850413 + L2 LINE L2 3041 3279 -34 204 359 66 0 chr12 3433992 3434159 -140848330 + L2 LINE L2 2873 3050 -222 1401 169 64 14 chr12 3434215 3434510 -140847979 - AluJo SINE Alu -2 310 1 208 227 23 0 chr12 3434529 3434573 -140847916 + CT-rich Low_complexity Low_complexity 1 45 0 269 272 22 88 chr12 3434736 3434792 -140847697 + MIR3 SINE MIR 78 136 -72 1854 144 28 0 chr12 3434792 3435083 -140847406 - AluJo SINE Alu -13 299 1 269 272 22 88 chr12 3435083 3435162 -140847327 + MIR3 SINE MIR 136 204 -4 2558 39 0 0 chr12 3435290 3435598 -140846891 - AluY SINE Alu -3 308 1 203 216 20 0 chr12 3436843 3436894 -140845595 - L2 LINE L2 -31 3241 3190 23 0 0 0 chr12 3437811 3437834 -140844655 + AT_rich Low_complexity Low_complexity 1 23 0 2190 90 0 0 chr12 3437865 3438153 -140844336 - AluY SINE Alu -23 288 1 1996 132 0 0 chr12 3438160 3438449 -140844040 - AluSx SINE Alu -23 289 1 2184 104 0 10 chr12 3438998 3439307 -140843182 - AluSq SINE Alu -7 306 1 212 280 0 0 chr12 3439330 3439380 -140843109 + L2 LINE L2 3252 3301 -12 258 314 204 0 chr12 3440053 3440225 -140842264 - L3b LINE CR1 -154 1429 1223 573 258 96 40 chr12 3440829 3440951 -140841538 + MER112 DNA MER1_type 52 191 -69 1313 196 154 0 chr12 3440951 3441211 -140841278 + AluJo SINE Alu 1 300 -2 573 258 96 40 chr12 3441211 3441286 -140841203 + MER112 DNA MER1_type 191 260 0 182 240 20 0 chr12 3441614 3441664 -140840825 - L2 LINE L2 -20 3252 3202 381 318 94 5 chr12 3441683 3441906 -140840583 + L3 LINE CR1 1081 1323 -254 288 274 130 13 chr12 3442013 3442172 -140840317 - MIR SINE MIR -65 143 20 370 306 139 6 chr12 3442315 3442488 -140840001 - MIR SINE MIR -65 197 2 246 295 80 36 chr12 3443250 3443362 -140839127 - L2 LINE L2 0 3313 3197 378 345 63 11 chr12 3444278 3444452 -140838037 - MER5A DNA MER1_type 0 189 7 216 265 169 36 chr12 3444480 3444563 -140837926 + MIR SINE MIR 20 113 -95 1852 156 16 25 chr12 3444827 3445141 -140837348 + AluJb SINE Alu 1 311 -1 242 160 20 0 chr12 3445141 3445191 -140837298 + GA-rich Low_complexity Low_complexity 1 51 0 273 231 15 15 chr12 3445852 3445917 -140836572 - L2 LINE L2 -2 3311 3247 238 284 99 0 chr12 3446940 3447021 -140835468 - L2 LINE L2 0 3313 3225 * 734 263 232 3 chr12 3447009 3447259 -140835230 - L2 LINE L2 -189 3124 2932 282 29 0 0 chr12 3447259 3447294 -140835195 + (TG)n Simple_repeat Simple_repeat 2 36 0 734 263 232 3 chr12 3447294 3447410 -140835079 - L2 LINE L2 -381 2932 2686 667 239 133 16 chr12 3447626 3447814 -140834675 - MER63A DNA MER1_type 0 210 1 338 260 120 0 chr12 3448224 3448324 -140834165 + MIR SINE MIR 34 145 -63 197 118 0 0 chr12 3448907 3448941 -140833548 - MIR SINE MIR -113 149 116 234 0 0 0 chr12 3448947 3448973 -140833516 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 192 335 155 59 chr12 3449732 3450022 -140832467 - L2 LINE L2 -95 3177 2860 358 332 144 34 chr12 3451553 3451936 -140830553 - L2 LINE L2 0 3272 2848 327 277 134 8 chr12 3452152 3452271 -140830218 - MIR3 SINE MIR -3 205 72 605 307 131 65 chr12 3452384 3453515 -140828974 - L2 LINE L2 -3 3310 2127 300 321 49 56 chr12 3453734 3453896 -140828593 - MIR SINE MIR -96 166 6 229 265 0 0 chr12 3454541 3454590 -140827899 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 219 265 162 0 chr12 3454591 3454659 -140827830 - L2 LINE L2 -42 3271 3193 239 359 39 31 chr12 3454845 3454973 -140827516 - L2 LINE L2 -16 3256 3128 1971 162 3 0 chr12 3455100 3455403 -140827086 - AluJb SINE Alu -8 304 1 399 211 0 11 chr12 3457199 3457289 -140825200 + MIR SINE MIR 120 208 -54 483 288 25 16 chr12 3457760 3457945 -140824544 - MIR SINE MIR -44 218 30 342 155 0 82 chr12 3458416 3458610 -140823879 + (CACAG)n Simple_repeat Simple_repeat 3 180 0 451 162 0 104 chr12 3458658 3459058 -140823431 + (CCA)n Simple_repeat Simple_repeat 1 358 0 447 172 0 63 chr12 3458803 3459613 -140822876 + (CACAG)n Simple_repeat Simple_repeat 1 759 0 * 270 301 49 41 chr12 3459748 3459871 -140822618 + L2 LINE L2 3138 3261 -11 292 274 88 35 chr12 3459918 3460031 -140822458 - L2 LINE L2 0 3272 3154 21 36 0 0 chr12 3461535 3461563 -140820926 + GC_rich Low_complexity Low_complexity 1 28 0 370 283 42 0 chr12 3463201 3463321 -140819168 + MIR3 SINE MIR 42 166 -42 234 176 14 95 chr12 3463954 3464028 -140818461 + L2 LINE L2 3246 3313 0 221 208 0 21 chr12 3466949 3466997 -140815492 - L2 LINE L2 0 3313 3267 183 42 0 0 chr12 3467296 3467320 -140815169 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 544 339 60 3 chr12 3469590 3469672 -140812817 - L1ME3A LINE L1 -209 5961 5885 2331 97 0 0 chr12 3469672 3469980 -140812509 + AluSg SINE Alu 2 309 -1 544 339 60 3 chr12 3469980 3470195 -140812294 - L1ME3A LINE L1 -285 5885 5647 220 222 37 0 chr12 3470195 3470249 -140812240 - MER5C DNA MER1_type -2 322 267 2667 36 0 0 chr12 3470394 3470703 -140811786 + AluY SINE Alu 1 309 -2 1304 65 12 0 chr12 3470703 3470873 -140811616 + AluY SINE Alu 133 304 -7 517 283 105 61 chr12 3470917 3471453 -140811036 - L1ME3A LINE L1 -674 5659 5148 1967 152 0 7 chr12 3471453 3471762 -140810727 - AluJo SINE Alu -5 307 1 517 283 105 61 chr12 3471762 3472311 -140810178 - L1ME3A LINE L1 -1185 5148 4549 2113 134 0 0 chr12 3472679 3472986 -140809503 - AluSg SINE Alu -3 307 1 465 226 140 12 chr12 3472991 3473155 -140809334 - L1ME3A LINE L1 -1555 4591 4407 801 153 30 0 chr12 3473158 3473289 -140809200 - AluJo SINE Alu -177 135 1 866 236 10 10 chr12 3474709 3474908 -140807581 + MIR3 SINE MIR 5 203 -5 323 414 53 10 chr12 3478526 3478734 -140803755 + MIR SINE MIR 23 239 -23 1412 62 42 10 chr12 3480388 3480580 -140801909 + L1PA7 LINE L1 5957 6154 0 2135 103 34 0 chr12 3480589 3480880 -140801609 + AluSq SINE Alu 1 301 -12 186 86 0 86 chr12 3481003 3481038 -140801451 - MIR SINE MIR -220 42 11 2175 124 0 3 chr12 3482069 3482375 -140800114 - AluSx SINE Alu -7 305 1 1748 163 51 0 chr12 3482382 3482658 -140799831 - AluJo SINE Alu -22 290 1 267 323 30 20 chr12 3482845 3482944 -140799545 - L2 LINE L2 -4 3268 3169 214 309 60 48 chr12 3484360 3484444 -140798045 + MIR SINE MIR 108 192 -70 573 263 13 13 chr12 3484571 3484727 -140797762 - MER5B DNA MER1_type -13 165 10 199 354 62 26 chr12 3484828 3484941 -140797548 - L3b LINE CR1 -198 1385 1269 347 342 37 43 chr12 3485089 3485276 -140797213 - MIR3 SINE MIR -7 201 16 600 123 0 0 chr12 3487277 3487358 -140795131 + FLAM_A SINE Alu 44 124 -18 774 32 0 0 chr12 3487369 3487462 -140795027 + (TG)n Simple_repeat Simple_repeat 2 94 0 332 281 0 0 chr12 3487462 3487526 -140794963 - L1MC4 LINE L1 -1341 6701 6638 519 202 0 0 chr12 3487530 3487614 -140794875 - FRAM/FAM SINE Alu -93 83 1 495 279 127 33 chr12 3488709 3488783 -140793706 - MIR SINE MIR -6 256 190 1729 164 0 50 chr12 3488783 3489100 -140793389 + AluJo SINE Alu 1 301 -11 495 279 127 33 chr12 3489100 3489254 -140793235 - MIR SINE MIR -72 190 15 1150 204 109 48 chr12 3489443 3489883 -140792606 - MLT1C LTR MaLR 0 467 1 23 0 0 0 chr12 3491817 3491840 -140790649 + AT_rich Low_complexity Low_complexity 1 23 0 274 271 112 9 chr12 3491928 3492035 -140790454 + MIR SINE MIR 20 137 -71 374 314 52 7 chr12 3493267 3493420 -140789069 - MER5B DNA MER1_type -2 176 17 234 339 57 24 chr12 3493505 3493739 -140788750 - L3 LINE CR1 -106 1471 1190 377 294 12 12 chr12 3494212 3494375 -140788114 - L1ME3A LINE L1 -220 5950 5788 287 285 46 46 chr12 3494379 3494509 -140787980 - L1ME3A LINE L1 -423 5739 5610 194 265 0 82 chr12 3495095 3495193 -140787296 + L2 LINE L2 3205 3294 -19 2345 51 0 69 chr12 3495595 3495929 -140786560 + AluY SINE Alu 1 311 0 492 18 0 0 chr12 3495934 3495991 -140786498 + (TA)n Simple_repeat Simple_repeat 2 58 0 489 303 82 26 chr12 3496048 3496243 -140786246 + MIR SINE MIR 1 206 -56 519 346 13 34 chr12 3496832 3497069 -140785420 + MIR SINE MIR 15 246 -16 * 725 286 95 9 chr12 3497006 3497237 -140785252 - MIR SINE MIR 0 262 12 220 336 89 59 chr12 3497581 3497852 -140784637 - L2 LINE L2 -21 3251 2973 228 217 22 0 chr12 3498734 3498780 -140783709 + C-rich Low_complexity Low_complexity 1 47 0 338 292 84 8 chr12 3498853 3499005 -140783484 - MIR3 SINE MIR -62 146 4 211 288 62 12 chr12 3500372 3500452 -140782037 - MIR SINE MIR -101 107 24 442 305 64 11 chr12 3500759 3500946 -140781543 - L1MC5 LINE L1 -36 7925 7729 365 291 88 20 chr12 3501175 3501323 -140781166 - MIR SINE MIR -102 160 3 250 306 24 12 chr12 3501341 3501426 -140781063 - MIR SINE MIR -176 86 1 793 336 48 12 chr12 3501572 3501986 -140780503 + L1ME LINE L1 5355 5783 -338 336 341 61 12 chr12 3503118 3503282 -140779207 - MIR3 SINE MIR -36 172 1 201 306 32 0 chr12 3503436 3503498 -140778991 + MIR SINE MIR 58 121 -87 404 318 80 17 chr12 3503990 3504166 -140778323 - MIR SINE MIR -6 256 70 2180 149 96 15 chr12 3506680 3507076 -140775413 - MSTA LTR MaLR 0 428 1 183 351 108 18 chr12 3508044 3508155 -140774334 + L3b LINE CR1 1461 1581 -2 223 323 50 10 chr12 3509300 3509399 -140773090 - MIR SINE MIR -56 206 104 359 330 54 0 chr12 3510446 3510558 -140771931 - MIR SINE MIR -61 147 30 250 316 13 0 chr12 3511671 3511750 -140770739 + CT-rich Low_complexity Low_complexity 3 82 0 329 271 30 8 chr12 3512195 3512328 -140770161 - L1ME4a LINE L1 -5 6116 5981 538 234 86 25 chr12 3514057 3514254 -140768235 + MIR SINE MIR 34 242 -20 193 268 115 70 chr12 3514536 3514693 -140767796 + MER5A DNA MER1_type 3 166 -23 195 376 30 0 chr12 3514774 3514875 -140767614 + MIR SINE MIR 150 253 -9 352 381 22 0 chr12 3515301 3515440 -140767049 - MIR SINE MIR 0 262 121 291 300 44 0 chr12 3519810 3519900 -140762589 - MIR SINE MIR -92 170 77 431 296 379 4 chr12 3520138 3520713 -140761776 - L2 LINE L2 -2 3311 2498 316 311 57 0 chr12 3520737 3520843 -140761646 - L2 LINE L2 -935 2379 2268 190 309 160 11 chr12 3521260 3521354 -140761135 - L2 LINE L2 -5 3308 3201 637 239 49 117 chr12 3521928 3522192 -140760297 - MIR SINE MIR -2 260 15 188 227 114 0 chr12 3523618 3523662 -140758827 + MIR SINE MIR 84 132 -76 291 254 156 18 chr12 3523771 3523909 -140758580 + MIR SINE MIR 35 187 -65 431 321 45 0 chr12 3523912 3524046 -140758443 - MIR3 SINE MIR 0 208 69 470 322 103 14 chr12 3525435 3525649 -140756840 - MIR SINE MIR -1 261 29 330 298 124 8 chr12 3526553 3526674 -140755815 + MIR SINE MIR 49 183 -79 409 316 75 0 chr12 3526997 3527130 -140755359 + MIR SINE MIR 100 242 -20 211 329 106 29 chr12 3527982 3528152 -140754337 - MIR SINE MIR 0 262 80 232 46 32 208 chr12 3529958 3530174 -140752315 + (CCCTG)n Simple_repeat Simple_repeat 2 179 0 471 287 98 6 chr12 3531975 3532139 -140750350 + L3 LINE CR1 913 1091 -486 325 282 17 86 chr12 3532149 3532323 -140750166 + L3 LINE CR1 1291 1452 -125 323 95 5 0 chr12 3533229 3533289 -140749200 - Alu SINE Alu -265 43 1 228 268 14 14 chr12 3533879 3533950 -140748539 - L2 LINE L2 -40 3273 3203 1193 178 53 0 chr12 3534765 3534973 -140747516 - MER20 DNA MER1_type 0 219 1 286 238 107 0 chr12 3535023 3535107 -140747382 - MIR3 SINE MIR -32 176 84 289 309 41 0 chr12 3536671 3536768 -140745721 + L2 LINE L2 2504 2604 -710 1218 308 63 9 chr12 3536907 3537566 -140744923 + L2 LINE L2 2614 3311 -2 190 330 65 60 chr12 3537599 3537784 -140744705 + L2 LINE L2 3072 3257 -15 198 337 51 10 chr12 3537796 3537894 -140744595 - MIR SINE MIR -33 229 128 356 299 81 40 chr12 3538801 3538975 -140743514 - MIR SINE MIR -2 260 80 310 197 0 15 chr12 3540043 3540109 -140742380 + L3 LINE CR1 1397 1461 -116 284 286 20 10 chr12 3540524 3540622 -140741867 - MIR SINE MIR -16 246 148 224 307 29 21 chr12 3542205 3542345 -140740144 + (CTGGGG)n Simple_repeat Simple_repeat 2 142 0 1248 192 54 23 chr12 3543109 3543369 -140739120 - AluJo SINE Alu -11 301 34 478 342 114 22 chr12 3548864 3549541 -140732948 - L2 LINE L2 -14 3258 2473 368 343 122 9 chr12 3549825 3550038 -140732451 + MIR SINE MIR 20 256 -6 1979 166 8 45 chr12 3550835 3551120 -140731369 + MER47A DNA MER2_type 1 270 -2053 2349 78 0 0 chr12 3551120 3551415 -140731074 - AluY SINE Alu -16 295 1 1979 166 8 45 chr12 3551415 3551508 -140730981 + MER47A DNA MER2_type 270 365 -1 2202 97 10 3 chr12 3551952 3552262 -140730227 - AluSq SINE Alu -1 312 1 840 142 0 8 chr12 3554059 3554193 -140728296 + FLAM_C SINE Alu 1 133 -10 216 0 0 0 chr12 3554350 3554374 -140728115 + (CAGGG)n Simple_repeat Simple_repeat 1 24 0 621 184 155 30 chr12 3554545 3554713 -140727776 + MER5A DNA MER1_type 1 189 0 331 307 150 13 chr12 3555702 3555855 -140726634 + MIR SINE MIR 86 259 -3 1817 173 0 3 chr12 3557840 3558141 -140724348 + AluJb SINE Alu 1 300 -12 387 242 44 0 chr12 3559117 3559208 -140723281 - MER5A DNA MER1_type -94 95 1 243 256 13 26 chr12 3559275 3559353 -140723136 - MER5A DNA MER1_type -93 96 20 216 0 0 0 chr12 3562014 3562038 -140720451 + (T)n Simple_repeat Simple_repeat 1 24 0 477 312 91 9 chr12 3562081 3562312 -140720177 - MIR SINE MIR -12 250 1 318 285 49 41 chr12 3562493 3562616 -140719873 + MIR SINE MIR 69 192 -70 450 288 142 14 chr12 3562664 3562883 -140719606 - MIR SINE MIR -15 247 1 219 186 0 0 chr12 3563156 3563199 -140719290 + (CA)n Simple_repeat Simple_repeat 1 43 0 1474 159 69 0 chr12 3563216 3563492 -140718997 + MER2 DNA MER2_type 48 342 -3 531 92 0 0 chr12 3563496 3563583 -140718906 + (CA)n Simple_repeat Simple_repeat 2 88 0 368 294 10 0 chr12 3565701 3565803 -140716686 + MIR SINE MIR 128 230 -32 852 250 88 0 chr12 3566682 3566874 -140715615 + MER3 DNA MER1_type 1 209 0 513 279 101 6 chr12 3567287 3567466 -140715023 - MIR SINE MIR -41 221 26 620 303 100 77 chr12 3568758 3569197 -140713292 - L2 LINE L2 0 3272 2824 373 272 105 42 chr12 3570397 3570588 -140711901 - MER115 DNA AcHobo -490 203 1 191 220 51 17 chr12 3572168 3572227 -140710262 + L2 LINE L2 2907 2967 -346 1121 186 48 5 chr12 3572780 3572990 -140709499 + MER20 DNA MER1_type 1 219 0 625 300 18 66 chr12 3573890 3574163 -140708326 - MIR SINE MIR 0 262 3 235 309 47 40 chr12 3574759 3574908 -140707581 + L2 LINE L2 2898 3047 -225 694 161 23 31 chr12 3576602 3576732 -140705757 + FLAM_C SINE Alu 15 143 0 315 0 0 0 chr12 3576785 3576820 -140705669 + (TG)n Simple_repeat Simple_repeat 1 35 0 240 298 64 0 chr12 3579607 3579701 -140702788 + (CATG)n Simple_repeat Simple_repeat 3 102 0 218 317 0 0 chr12 3580378 3580438 -140702051 + L3 LINE CR1 1511 1570 -7 1202 228 96 8 chr12 3580915 3581270 -140701219 - MER88 LTR ERVL 0 464 79 304 340 62 7 chr12 3581328 3581472 -140701017 + MIR SINE MIR 83 234 -28 1010 209 78 76 chr12 3582939 3583361 -140699128 + L1MC5 LINE L1 7316 7738 -223 342 250 40 75 chr12 3583349 3583601 -140698888 + L1MC5 LINE L1 7668 7910 -51 * 603 222 6 11 chr12 3583646 3583822 -140698667 + GA-rich Low_complexity Low_complexity 5 179 0 537 289 115 9 chr12 3584282 3584500 -140697989 - MIR SINE MIR -12 250 10 332 279 175 25 chr12 3584623 3584825 -140697664 - MIR3 SINE MIR -31 231 3 375 294 17 100 chr12 3585503 3585683 -140696806 - MIR SINE MIR -50 212 48 733 214 40 23 chr12 3585860 3586033 -140696456 + MER104 DNA MER2_type 1 176 -4 385 311 19 0 chr12 3586181 3586287 -140696202 + MIR SINE MIR 43 150 -58 462 197 242 0 chr12 3586866 3586998 -140695491 + MER5B DNA MER1_type 15 178 0 595 295 6 22 chr12 3587733 3587916 -140694573 + MIR3 SINE MIR 1 180 -28 197 304 0 38 chr12 3588782 3588861 -140693628 + L2 LINE L2 2409 2484 -830 202 306 69 38 chr12 3588957 3589117 -140693372 + L2 LINE L2 2718 2882 -432 343 306 45 0 chr12 3589177 3589288 -140693201 + MIR SINE MIR 6 121 -141 291 329 85 53 chr12 3589812 3590058 -140692431 - L2 LINE L2 -1 3271 3018 213 175 0 0 chr12 3590770 3590810 -140691679 + GA-rich Low_complexity Low_complexity 1 40 0 491 299 51 13 chr12 3590810 3590967 -140691522 - MIR3 SINE MIR -29 179 17 2610 79 56 0 chr12 3591147 3591502 -140690987 + THE1C LTR MaLR 1 375 0 397 212 62 0 chr12 3592330 3592443 -140690046 - MER112 DNA MER1_type -8 252 133 1993 167 29 31 chr12 3592444 3593000 -140689489 - MLT2A2 LTR ERVL 0 554 1 386 313 154 39 chr12 3593161 3593311 -140689178 - MIR SINE MIR -1 261 73 1353 208 80 55 chr12 3593311 3593676 -140688813 - MLT1A2 LTR MaLR 0 374 1 386 313 154 39 chr12 3593676 3593758 -140688731 - MIR SINE MIR -189 73 2 304 297 99 0 chr12 3593996 3594107 -140688382 + L2 LINE L2 3188 3309 -4 282 280 102 8 chr12 3594126 3594244 -140688245 + MIR SINE MIR 25 153 -109 500 196 11 0 chr12 3595312 3595404 -140687085 - MER81 DNA DNA -21 93 1 606 333 135 8 chr12 3595462 3595930 -140686559 + L2 LINE L2 2100 2626 -688 227 285 39 54 chr12 3595935 3595969 -140686520 + L1ME4a LINE L1 5992 6025 -96 1843 227 44 24 chr12 3595969 3596427 -140686062 + MLT1C LTR MaLR 1 467 0 227 285 39 54 chr12 3596427 3596522 -140685967 + L1ME4a LINE L1 6025 6119 -2 1016 211 123 55 chr12 3596616 3597035 -140685454 + MER110A LTR ERV1 67 491 0 270 305 144 0 chr12 3597068 3597186 -140685303 - MIR SINE MIR -112 150 16 226 147 0 0 chr12 3597320 3597354 -140685135 + MER54A LTR ERVL 532 565 -336 240 35 0 0 chr12 3598289 3598318 -140684171 + (TC)n Simple_repeat Simple_repeat 1 29 0 183 200 50 0 chr12 3598460 3598500 -140683989 - MIR SINE MIR -58 150 109 943 206 83 13 chr12 3598525 3598753 -140683736 + MIR SINE MIR 19 262 0 281 210 62 62 chr12 3599839 3599920 -140682569 - MIR3 SINE MIR -5 203 123 495 168 31 20 chr12 3600052 3600166 -140682323 + MIR SINE MIR 1 119 -89 793 260 72 13 chr12 3600171 3600406 -140682083 - MIR SINE MIR -11 251 3 662 274 29 20 chr12 3600532 3600736 -140681753 + MLT1J LTR MaLR 4 209 -302 776 325 6 0 chr12 3600736 3601074 -140681415 - L1M4 LINE L1 -3427 2719 2380 2323 88 0 20 chr12 3601101 3601398 -140681091 - AluSp SINE Alu -22 291 1 934 242 30 30 chr12 3601399 3601663 -140680826 + MLT1J LTR MaLR 199 462 -49 183 232 24 61 chr12 3603399 3603481 -140679008 + MIR SINE MIR 59 137 -125 617 205 108 30 chr12 3603489 3603617 -140678872 - MER5A DNA MER1_type 0 189 44 418 227 27 36 chr12 3603617 3603727 -140678762 + MER81 DNA DNA 2 110 -4 617 205 108 30 chr12 3603727 3603764 -140678725 - MER5A DNA MER1_type -145 44 11 236 100 0 50 chr12 3603769 3603809 -140678680 + L3 LINE CR1 1532 1569 -8 371 285 78 90 chr12 3604460 3604870 -140677619 - L2 LINE L2 -1 3271 2867 186 43 0 0 chr12 3605058 3605081 -140677408 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1521 150 8 0 chr12 3605082 3605335 -140677154 - L1MA8 LINE L1 -402 5889 5635 1319 118 78 96 chr12 3605339 3605568 -140676921 + L1MA8 LINE L1 5867 6098 -214 1561 71 66 0 chr12 3605568 3605780 -140676709 - L1PA6 LINE L1 -5 6149 5924 2552 60 0 13 chr12 3605785 3606086 -140676403 - AluY SINE Alu -7 304 8 1319 118 78 96 chr12 3606086 3606146 -140676343 + L1MA8 LINE L1 6102 6162 -150 363 22 0 0 chr12 3606146 3606192 -140676297 - MADE1 DNA Mariner 0 80 35 1319 118 78 96 chr12 3606192 3606298 -140676191 + L1MA8 LINE L1 6162 6289 -23 247 215 129 21 chr12 3606782 3606875 -140675614 - MIR SINE MIR -86 122 20 507 268 56 0 chr12 3606907 3607049 -140675440 - MIR SINE MIR -1 261 112 1131 83 0 0 chr12 3607419 3607575 -140674914 + (TTCC)n Simple_repeat Simple_repeat 1 156 0 1893 135 0 0 chr12 3607583 3607843 -140674646 - AluSx SINE Alu -52 260 1 453 269 27 54 chr12 3608335 3608484 -140674005 + MIR SINE MIR 48 192 -70 183 278 37 0 chr12 3609148 3609202 -140673287 + MIR SINE MIR 42 97 -111 415 212 59 34 chr12 3609364 3609386 -140673103 - MIR SINE MIR -32 230 210 1387 184 34 13 chr12 3609386 3609620 -140672869 + MER8 DNA MER2_type 1 239 0 415 212 59 34 chr12 3609620 3609715 -140672774 - MIR SINE MIR -52 210 110 265 257 40 0 chr12 3609717 3609791 -140672698 - MER94 DNA DNA -33 101 25 263 278 56 0 chr12 3610907 3610979 -140671510 - MIR SINE MIR -70 192 117 437 240 48 10 chr12 3611308 3611412 -140671077 + MER91C DNA MER1_type 31 138 -2 599 263 78 10 chr12 3611793 3611986 -140670503 + MLT1J LTR MaLR 2 175 -275 859 213 41 0 chr12 3612092 3612261 -140670228 - MER5A DNA MER1_type -1 188 13 381 191 77 101 chr12 3612261 3612429 -140670060 + MLT1J LTR MaLR 312 475 -36 204 333 141 15 chr12 3613511 3613646 -140668843 - L2 LINE L2 0 3272 3121 388 212 80 80 chr12 3614615 3614766 -140667723 + MIR3 SINE MIR 3 153 -55 203 312 39 39 chr12 3615071 3615148 -140667341 - MIR3 SINE MIR -2 206 130 316 113 0 0 chr12 3615201 3615254 -140667235 - L1MB4 LINE L1 -1 6179 6127 190 286 65 26 chr12 3616055 3616132 -140666357 + MIR SINE MIR 68 147 -115 199 171 24 146 chr12 3616832 3616914 -140665575 - MIR3 SINE MIR -132 76 5 273 259 133 49 chr12 3617479 3617622 -140664867 - MIR3 SINE MIR -30 178 24 823 262 59 5 chr12 3618152 3618373 -140664116 + MIR SINE MIR 30 262 0 204 146 122 0 chr12 3618764 3618805 -140663684 + MIR SINE MIR 96 141 -67 781 146 129 23 chr12 3618956 3619127 -140663362 - MER5A DNA MER1_type 0 189 1 413 295 29 0 chr12 3619139 3619244 -140663245 + MER5B DNA MER1_type 8 115 -63 672 173 36 36 chr12 3619312 3619480 -140663009 - MER58C DNA MER1_type -1 214 47 2491 213 45 12 chr12 3620466 3621043 -140661446 + MER45B DNA AcHobo 1 596 -444 1031 152 35 23 chr12 3621060 3621231 -140661258 + AluJb SINE Alu 131 303 -9 841 164 0 0 chr12 3621527 3621655 -140660834 - FLAM_C SINE Alu -5 128 1 415 311 26 1 chr12 3622417 3622572 -140659917 - MIR SINE MIR -39 169 3 2521 58 7 10 chr12 3623083 3623392 -140659097 + AluY SINE Alu 1 308 -3 600 287 164 15 chr12 3624316 3624584 -140657905 - L2 LINE L2 -1 3312 3005 266 287 49 33 chr12 3624599 3624721 -140657768 - MIR SINE MIR -62 146 23 1233 131 0 0 chr12 3624773 3624941 -140657548 + AluSq SINE Alu 1 168 -145 195 42 0 0 chr12 3625044 3625068 -140657421 + (TCCCC)n Simple_repeat Simple_repeat 3 26 0 241 291 82 68 chr12 3625571 3625777 -140656712 - MIR SINE MIR -42 220 12 22 56 0 0 chr12 3626711 3626747 -140655742 + GC_rich Low_complexity Low_complexity 1 36 0 345 284 18 0 chr12 3628456 3628565 -140653924 + LTR16A LTR ERVL 239 349 -101 259 191 15 73 chr12 3628750 3628818 -140653671 + LTR16A LTR ERVL 382 445 -5 1083 204 24 67 chr12 3629342 3629715 -140652774 - Charlie5 DNA MER1_type -22 2590 2234 527 248 0 16 chr12 3629718 3629843 -140652646 - MER3 DNA MER1_type -47 162 40 201 237 0 0 chr12 3630279 3630317 -140652172 + MIR SINE MIR 113 150 -58 315 0 0 0 chr12 3630752 3630787 -140651702 + (CA)n Simple_repeat Simple_repeat 1 35 0 282 146 42 0 chr12 3631203 3631251 -140651238 - AluJ/FLAM SINE Alu -240 62 13 420 167 0 0 chr12 3631257 3631329 -140651160 + FLAM SINE Alu 53 124 -19 282 73 0 0 chr12 3631341 3631382 -140651107 + (TAAAA)n Simple_repeat Simple_repeat 5 45 0 341 291 26 51 chr12 3632256 3632373 -140650116 - HAL1b LINE L1 -13 1335 1222 294 291 91 43 chr12 3632406 3632660 -140649829 - L1ME4a LINE L1 -225 5896 5631 196 169 17 34 chr12 3632698 3632757 -140649732 + (CATA)n Simple_repeat Simple_repeat 4 61 0 759 299 66 71 chr12 3633055 3633507 -140648982 + L1MEc LINE L1 2061 2510 -3886 1245 150 75 66 chr12 3633609 3633929 -140648560 + MER33 DNA MER1_type 2 324 0 713 209 20 0 chr12 3635178 3635326 -140647163 + MER45A DNA AcHobo 28 178 0 306 0 0 0 chr12 3635498 3635532 -140646957 + (TGG)n Simple_repeat Simple_repeat 1 34 0 344 352 39 66 chr12 3635596 3635852 -140646637 + L2 LINE L2 2835 3083 -189 437 376 73 6 chr12 3636408 3636573 -140645916 + MER91A DNA MER1_type 16 191 -5 304 304 123 0 chr12 3637137 3637275 -140645214 - MIR3 SINE MIR -7 201 47 2177 94 31 22 chr12 3637371 3637690 -140644799 + THE1B LTR MaLR 1 322 -42 580 216 153 51 chr12 3638410 3638665 -140643824 + L2 LINE L2 3030 3310 -3 673 70 0 0 chr12 3638667 3638779 -140643710 + L1PA10 LINE L1 6060 6171 0 329 277 50 10 chr12 3639176 3639277 -140643212 - MER91C DNA MER1_type -35 105 1 918 279 60 53 chr12 3639351 3640031 -140642458 + L2 LINE L2 2630 3313 0 264 365 83 6 chr12 3640439 3640595 -140641894 + MIR SINE MIR 33 200 -62 5049 199 32 23 chr12 3642363 3644139 -140638350 - L1MD1 LINE L1 -2 6240 4455 1910 147 68 34 chr12 3644139 3644492 -140637997 + MLT1A1 LTR MaLR 1 365 0 5049 199 32 23 chr12 3644492 3645082 -140637407 - L1MD1 LINE L1 -1787 4455 3872 440 289 39 19 chr12 3645122 3645278 -140637211 - MLT1L LTR MaLR -11 604 446 417 188 145 0 chr12 3645351 3645468 -140637021 - MLT1L LTR MaLR -314 301 168 519 238 19 0 chr12 3645537 3645642 -140636847 - MER20B DNA MER1_type -608 175 69 554 261 24 6 chr12 3645840 3646005 -140636484 - MIR SINE MIR -8 254 87 255 103 0 0 chr12 3646628 3646667 -140635822 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 204 373 0 0 chr12 3647260 3647327 -140635162 + (TCCA)n Simple_repeat Simple_repeat 1 67 0 2368 98 10 0 chr12 3647418 3647724 -140634765 - AluSg SINE Alu -1 309 1 209 349 39 39 chr12 3647741 3647870 -140634619 + L2 LINE L2 3136 3264 -8 182 222 0 0 chr12 3648336 3648372 -140634117 - L2 LINE L2 -15 3298 3263 1882 237 55 101 chr12 3648398 3649271 -140633218 - L1MC4 LINE L1 0 8042 7210 732 208 42 21 chr12 3649278 3649470 -140633019 - MIR SINE MIR -64 198 3 403 250 27 0 chr12 3649926 3650038 -140632451 - MIR3 SINE MIR -41 167 53 186 43 0 0 chr12 3650176 3650199 -140632290 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 247 294 56 24 chr12 3650208 3650334 -140632155 - L2 LINE L2 -1 3271 3142 631 253 34 11 chr12 3651240 3651418 -140631071 - MIR SINE MIR -69 193 12 350 264 33 33 chr12 3651515 3651636 -140630853 + L2 LINE L2 3148 3268 -4 642 279 140 17 chr12 3651842 3652380 -140630109 - L2 LINE L2 0 3313 2704 325 305 141 8 chr12 3652394 3652522 -140629967 + L2 LINE L2 3126 3270 -2 222 348 43 27 chr12 3652719 3652906 -140629583 - L2 LINE L2 -359 2955 2766 25 0 0 0 chr12 3652906 3652931 -140629558 + AT_rich Low_complexity Low_complexity 1 25 0 43926 32 23 1 chr12 3652931 3658950 -140623539 - L1PA3 LINE L1 -4 6151 1 285 237 64 103 chr12 3660673 3660734 -140621755 + L1ME LINE L1 5578 5640 -481 14380 134 15 2 chr12 3660734 3661581 -140620908 + L1PA11 LINE L1 2994 3828 -2346 2385 95 10 10 chr12 3661581 3661886 -140620603 + AluSp SINE Alu 1 305 -8 14380 134 15 2 chr12 3661886 3664209 -140618280 + L1PA11 LINE L1 3828 6174 0 285 237 64 103 chr12 3664209 3664303 -140618186 + L1ME LINE L1 5640 5727 -394 2311 98 10 0 chr12 3664318 3664615 -140617874 + AluSx SINE Alu 5 304 -8 266 247 93 10 chr12 3664705 3664802 -140617687 - L1MC4 LINE L1 -9 8033 7929 21 36 0 0 chr12 3664955 3664983 -140617506 + AT_rich Low_complexity Low_complexity 1 28 0 707 212 28 79 chr12 3665112 3665348 -140617141 - L1ME3A LINE L1 -33 6129 5911 895 271 48 11 chr12 3665351 3665724 -140616765 - L1M4 LINE L1 -3487 3680 3294 2740 97 14 3 chr12 3665730 3666101 -140616388 - THE1C LTR MaLR 0 375 1 9742 114 49 38 chr12 3666101 3667660 -140614829 - THE1C-int LTR MaLR 0 1580 4 2963 85 0 0 chr12 3667662 3668037 -140614452 - THE1C LTR MaLR 0 375 1 2913 174 14 86 chr12 3668037 3668829 -140613660 - L1M4 LINE L1 -4338 2830 2096 390 174 41 0 chr12 3668839 3668937 -140613552 + CT-rich Low_complexity Low_complexity 4 105 0 1566 217 0 10 chr12 3668945 3669249 -140613240 - AluJb SINE Alu -7 305 5 7016 200 40 21 chr12 3669249 3670696 -140611793 - L1M4 LINE L1 -5048 2120 646 2422 92 0 0 chr12 3671217 3671523 -140610966 - AluSg SINE Alu -4 306 1 991 183 213 39 chr12 3672287 3672648 -140609841 + MSTC LTR MaLR 1 424 -4 328 221 29 0 chr12 3672653 3672717 -140609772 - MER2 DNA MER2_type 0 345 280 4009 118 62 6 chr12 3672717 3673377 -140609112 - Tigger3(Golem) DNA MER2_type -1 3028 2332 647 149 79 0 chr12 3673380 3673494 -140608995 + THE1B LTR MaLR 1 123 -252 1077 98 0 0 chr12 3673497 3673629 -140608860 - AluSg SINE Alu -178 132 1 377 82 0 33 chr12 3673867 3673928 -140608561 - AluSq/x SINE Alu -163 139 81 * 1699 129 4 0 chr12 3673919 3674160 -140608329 + THE1B LTR MaLR 123 364 0 1133 113 0 0 chr12 3674160 3674319 -140608170 - Tigger3(Golem) DNA MER2_type -695 2334 2176 925 199 25 0 chr12 3674308 3674469 -140608020 - Tigger3(Golem) DNA MER2_type -2864 165 1 * 1290 131 29 5 chr12 3674508 3674714 -140607775 - MER2 DNA MER2_type -134 211 1 392 248 70 16 chr12 3674726 3674855 -140607634 + L1ME4a LINE L1 5969 6104 -17 487 138 99 138 chr12 3674966 3675118 -140607371 - MER21B LTR ERV1 -19 912 693 660 203 29 37 chr12 3675329 3675499 -140606990 - LTR1B LTR ERV1 -62 1216 332 428 263 134 12 chr12 3675550 3675731 -140606758 - LTR1 LTR ERV1 -568 217 48 3699 158 51 3 chr12 3675731 3676340 -140606149 - MER21B LTR ERV1 -225 638 1 404 214 101 44 chr12 3676439 3676598 -140605891 - MIR3 SINE MIR -23 185 18 941 251 22 4 chr12 3678596 3678823 -140603666 + MIR SINE MIR 32 262 0 276 292 45 0 chr12 3679859 3679948 -140602541 - MIR SINE MIR -78 130 38 553 139 19 0 chr12 3680673 3680781 -140601708 + GA-rich Low_complexity Low_complexity 1 110 0 380 163 0 81 chr12 3680995 3681081 -140601408 + MIR SINE MIR 73 151 -111 276 114 0 0 chr12 3682838 3682882 -140599607 + MIR SINE MIR 101 144 -64 1757 204 54 36 chr12 3683090 3683320 -140599169 - LTR2 LTR ERV1 0 449 206 228 67 0 0 chr12 3683320 3683350 -140599139 + (CAGAA)n Simple_repeat Simple_repeat 1 30 0 1757 204 54 36 chr12 3683350 3683560 -140598929 - LTR2 LTR ERV1 -243 206 1 33233 113 40 51 chr12 3683560 3690690 -140591799 - Harlequin LTR ERV1 0 6896 1 1982 192 66 27 chr12 3690690 3691132 -140591357 - LTR2B LTR ERV1 0 490 32 338 248 193 0 chr12 3691485 3691594 -140590895 - L2 LINE L2 0 3272 3143 381 321 137 18 chr12 3691735 3692012 -140590477 - L2 LINE L2 -439 2875 2566 253 320 120 16 chr12 3692267 3692576 -140589913 - L2 LINE L2 -1245 2069 1729 186 118 0 0 chr12 3693481 3693515 -140588974 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 515 320 65 7 chr12 3693670 3693945 -140588544 - L1ME LINE L1 -504 5660 5370 726 212 26 36 chr12 3694085 3694278 -140588211 - MIR SINE MIR -14 248 58 2198 98 28 0 chr12 3694334 3694620 -140587869 - AluSx SINE Alu -18 294 1 2335 109 0 0 chr12 3695673 3695985 -140586504 - AluSx SINE Alu 0 312 1 2400 93 3 0 chr12 3696226 3696536 -140585953 - AluY SINE Alu 0 311 1 182 37 37 0 chr12 3697185 3697212 -140585277 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 344 340 19 31 chr12 3697901 3698063 -140584426 - L1MC4a LINE L1 -1879 5929 5770 1427 130 14 0 chr12 3698075 3698290 -140584199 - L1PA15 LINE L1 0 6165 5948 261 0 0 0 chr12 3698339 3698368 -140584121 + (TA)n Simple_repeat Simple_repeat 1 29 0 406 282 84 35 chr12 3698422 3698624 -140583865 + MIR SINE MIR 34 245 -17 277 294 101 25 chr12 3700668 3700787 -140581702 + MIR SINE MIR 17 144 -64 2155 86 0 14 chr12 3700895 3701175 -140581314 + AluSc SINE Alu 1 276 -33 275 0 29 0 chr12 3701175 3701210 -140581279 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 982 257 92 14 chr12 3701260 3701618 -140580871 + Charlie7 DNA MER1_type 180 565 -2047 465 212 83 86 chr12 3701703 3702028 -140580461 + Charlie7 DNA MER1_type 2192 2515 -97 184 241 35 35 chr12 3702156 3702214 -140580275 + L2 LINE L2 2934 2991 -322 205 208 21 0 chr12 3702254 3702302 -140580187 + L2 LINE L2 3201 3249 -23 525 307 81 61 chr12 3702502 3703070 -140579419 + L1M4 LINE L1 2699 3263 -2883 2295 102 0 0 chr12 3703388 3703673 -140578816 - AluSg SINE Alu -25 285 1 1114 297 70 50 chr12 3704010 3704735 -140577754 + L2 LINE L2 2333 3064 -249 276 111 44 0 chr12 3706166 3706211 -140576278 + MIR SINE MIR 183 229 -33 474 226 34 85 chr12 3708117 3708294 -140574195 + L2 LINE L2 2885 3052 -220 1881 143 0 40 chr12 3708719 3709019 -140573470 - AluJo SINE Alu -22 290 3 713 121 258 0 chr12 3709021 3709211 -140573278 - Charlie1a DNA MER1_type -30 1425 1187 698 173 93 0 chr12 3709216 3709366 -140573123 - MER20 DNA MER1_type -6 213 50 6724 76 20 0 chr12 3709418 3710708 -140571781 - L1PA10 LINE L1 0 6168 4890 4674 189 75 6 chr12 3710710 3711750 -140570739 - Charlie1a DNA MER1_type -1591 1170 51 198 0 0 0 chr12 3711750 3711772 -140570717 + (C)n Simple_repeat Simple_repeat 1 22 0 4674 189 75 6 chr12 3711772 3711813 -140570676 - Charlie1a DNA MER1_type -2710 51 14 756 238 28 6 chr12 3711929 3712110 -140570379 - MIR3 SINE MIR -1 207 23 1348 112 5 0 chr12 3712837 3713033 -140569456 + L1PA13 LINE L1 5951 6147 -16 285 29 0 0 chr12 3713033 3713067 -140569422 + (CA)n Simple_repeat Simple_repeat 2 35 0 3028 169 37 2 chr12 3715353 3715914 -140566575 + LTR26 LTR ERV1 1 581 -22 412 127 0 0 chr12 3715920 3715983 -140566506 + LTR26 LTR ERV1 541 603 0 202 271 57 43 chr12 3716495 3716565 -140565924 - MIR SINE MIR -98 164 94 519 306 42 14 chr12 3716634 3716850 -140565639 + MIR SINE MIR 20 241 -21 234 0 0 0 chr12 3717781 3717807 -140564682 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 1888 157 10 7 chr12 3718025 3718325 -140564164 - AluJo SINE Alu -11 301 1 2330 90 30 0 chr12 3718554 3718853 -140563636 - AluSc SINE Alu -1 308 1 313 273 91 0 chr12 3720813 3720901 -140561588 - MIR3 SINE MIR -28 180 85 545 238 67 47 chr12 3721309 3721502 -140560987 - MIR SINE MIR -58 204 8 273 238 36 12 chr12 3722449 3722533 -140559956 - LTR23 LTR ERV1 0 437 352 2311 113 21 0 chr12 3722618 3722954 -140559535 - L1PA13 LINE L1 -10 6153 5811 726 98 0 0 chr12 3722955 3723057 -140559432 + L1PA13 LINE L1 5690 5791 -370 1383 177 90 3 chr12 3723059 3723359 -140559130 - LTR56 LTR ERV1 -111 334 9 365 107 165 29 chr12 3723854 3723946 -140558543 - MIR SINE MIR -62 146 58 209 252 233 48 chr12 3724179 3724282 -140558207 + MIR SINE MIR 2 123 -139 809 183 26 26 chr12 3724323 3724476 -140558013 - FRAM SINE Alu -25 151 1 247 225 225 0 chr12 3725254 3725343 -140557146 - L2 LINE L2 0 3313 3205 993 157 141 0 chr12 3725380 3725565 -140556924 + MER101B LTR ERV1 234 444 -126 2028 80 36 25 chr12 3725573 3725847 -140556642 + AluSp SINE Alu 15 291 -22 380 152 42 0 chr12 3725847 3726012 -140556477 + (TA)n Simple_repeat Simple_repeat 1 172 0 33 25 0 0 chr12 3726012 3726052 -140556437 + AT_rich Low_complexity Low_complexity 1 40 0 713 145 23 8 chr12 3726052 3726183 -140556306 + MER101 LTR ERV1 338 470 -4 253 305 29 19 chr12 3726274 3726379 -140556110 - L2 LINE L2 -494 2820 2715 450 305 11 9 chr12 3726845 3726995 -140555494 + MIR3 SINE MIR 47 192 -45 382 298 61 0 chr12 3727116 3727233 -140555256 + MIR SINE MIR 43 168 -40 2601 54 0 10 chr12 3727672 3727985 -140554504 + AluY SINE Alu 1 310 -1 1931 244 84 16 chr12 3728725 3729298 -140553191 - MER90 LTR ERV1 0 614 3 1356 204 87 9 chr12 3730118 3730451 -140552038 + L1MB7 LINE L1 5826 6184 0 213 121 0 0 chr12 3733075 3733108 -140549381 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 610 276 86 17 chr12 3733149 3733381 -140549108 + MIR SINE MIR 13 260 -2 651 343 55 75 chr12 3733675 3734907 -140547582 + L2 LINE L2 1603 2809 -505 411 294 79 1 chr12 3734940 3735087 -140547402 + MIR SINE MIR 35 190 -61 432 326 81 52 chr12 3735176 3735618 -140546871 + L2 LINE L2 2817 3271 -1 219 386 95 21 chr12 3736849 3737038 -140545451 + L3b LINE CR1 1289 1491 -92 281 306 120 28 chr12 3737986 3738094 -140544395 - L2 LINE L2 -1 3271 3154 653 82 10 0 chr12 3738958 3739055 -140543434 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 260 289 87 0 chr12 3741126 3741230 -140541259 - MIR3 SINE MIR -9 199 87 310 250 43 11 chr12 3741290 3741382 -140541107 - MIR3 SINE MIR -108 100 6 426 253 31 62 chr12 3743544 3743706 -140538783 - MIR SINE MIR -82 180 24 457 287 18 17 chr12 3743713 3743920 -140538569 + MIR SINE MIR 36 241 -21 486 268 22 29 chr12 3745045 3745183 -140537306 - MIR3 SINE MIR -67 141 5 328 255 131 48 chr12 3745257 3745402 -140537087 - MIR SINE MIR -27 235 79 395 294 40 56 chr12 3746201 3746563 -140535926 + L1MC4a LINE L1 5696 6035 -86 24 0 0 0 chr12 3746993 3747017 -140535472 + AT_rich Low_complexity Low_complexity 1 24 0 256 368 97 26 chr12 3748210 3748365 -140534124 - L3 LINE CR1 0 1577 1412 700 205 112 6 chr12 3748568 3748729 -140533760 + MER5B DNA MER1_type 1 178 0 546 275 192 0 chr12 3748768 3748950 -140533539 + MIR SINE MIR 31 247 -15 220 254 55 0 chr12 3749016 3749071 -140533418 - MIR SINE MIR -10 252 195 187 330 0 23 chr12 3749319 3749407 -140533082 + L2 LINE L2 3227 3312 -1 185 214 0 48 chr12 3749497 3749539 -140532950 - L2 LINE L2 -15 3298 3259 331 279 95 27 chr12 3749557 3749704 -140532785 - MLT1G1 LTR MaLR 0 595 439 388 299 76 11 chr12 3750065 3750249 -140532240 + MIR3 SINE MIR 4 199 -9 396 59 0 0 chr12 3750524 3750575 -140531914 + (CA)n Simple_repeat Simple_repeat 1 51 0 405 0 0 0 chr12 3751392 3751437 -140531052 + (GA)n Simple_repeat Simple_repeat 2 46 0 22 35 0 0 chr12 3751793 3751822 -140530667 + GC_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 3752010 3752031 -140530458 + GC_rich Low_complexity Low_complexity 1 21 0 513 0 0 0 chr12 3752549 3752606 -140529883 + (TG)n Simple_repeat Simple_repeat 2 58 0 209 333 81 18 chr12 3754876 3754987 -140527502 - L2 LINE L2 -8 3264 3147 414 206 56 86 chr12 3755036 3755205 -140527284 - MIR SINE MIR -63 145 37 296 288 144 0 chr12 3755510 3755663 -140526826 + MIR SINE MIR 82 256 -6 400 298 0 15 chr12 3756122 3756253 -140526236 + L2 LINE L2 2932 3060 -212 234 0 0 0 chr12 3756931 3756957 -140525532 + (T)n Simple_repeat Simple_repeat 1 26 0 518 230 241 16 chr12 3757263 3757454 -140525035 + MIR SINE MIR 29 262 0 21 0 0 0 chr12 3757629 3757650 -140524839 + AT_rich Low_complexity Low_complexity 1 21 0 328 325 165 34 chr12 3757986 3758223 -140524266 - L3b LINE CR1 -26 1557 1290 198 302 38 0 chr12 3758545 3758598 -140523891 - MIR3 SINE MIR -3 205 151 442 324 7 14 chr12 3758885 3759027 -140523462 - MIR SINE MIR -114 148 8 1826 192 45 11 chr12 3759501 3759876 -140522613 - MLT1C LTR MaLR 0 467 80 28 0 0 0 chr12 3759876 3759904 -140522585 + AT_rich Low_complexity Low_complexity 1 28 0 44128 29 21 1 chr12 3759912 3765945 -140516544 - L1HS LINE L1 0 6155 1 480 157 22 11 chr12 3765949 3766038 -140516451 - MLT1C LTR MaLR -375 92 3 493 384 20 0 chr12 3766226 3766424 -140516065 - MIR SINE MIR -3 259 58 565 262 94 53 chr12 3766779 3767023 -140515466 + MIR SINE MIR 9 262 0 2471 56 0 0 chr12 3767831 3768137 -140514352 - AluY SINE Alu -5 306 1 1264 125 0 0 chr12 3768463 3768655 -140513834 - AluSg/x SINE Alu 0 312 121 466 329 140 40 chr12 3769370 3770314 -140512175 + L2 LINE L2 2156 3267 -5 1372 139 0 17 chr12 3771035 3771272 -140511217 + L1MA5A LINE L1 6061 6293 -4 372 324 205 42 chr12 3772790 3773386 -140509103 + L2 LINE L2 1881 2573 -741 180 111 0 0 chr12 3773495 3773522 -140508967 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 213 298 0 0 chr12 3773675 3773732 -140508757 + MIR SINE MIR 34 90 -118 577 272 31 0 chr12 3775686 3775848 -140506641 - MIR SINE MIR -12 250 84 683 132 88 137 chr12 3776036 3776099 -140506390 + MER5A DNA MER1_type 15 80 -109 1198 35 0 0 chr12 3776099 3776242 -140506247 + L1PA4 LINE L1 6010 6152 -3 683 132 88 137 chr12 3776242 3776360 -140506129 + MER5A DNA MER1_type 80 187 -2 190 285 130 41 chr12 3776253 3776376 -140506113 - MER5A DNA MER1_type -51 138 5 * 282 116 0 0 chr12 3777032 3777075 -140505414 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 751 305 56 13 chr12 3777075 3777380 -140505109 - L2 LINE L2 0 3313 2996 191 88 29 0 chr12 3777727 3777761 -140504728 + (CAA)n Simple_repeat Simple_repeat 2 36 0 256 202 144 29 chr12 3778186 3778290 -140504199 + BaEV-int LTR ERV1 187 302 -6347 551 363 3 7 chr12 3778471 3778760 -140503729 + BaEV-int LTR ERV1 719 1006 -6779 703 318 65 58 chr12 3778939 3779704 -140502785 + BaEV-int LTR ERV1 1264 2034 -5751 462 159 0 0 chr12 3779705 3779774 -140502715 + LTR18B LTR ERVL 334 402 -212 458 101 0 25 chr12 3779827 3779906 -140502583 + LTR18B LTR ERVL 268 344 -270 258 344 6 25 chr12 3779923 3780080 -140502409 + GA-rich Low_complexity Low_complexity 2 155 0 566 250 133 27 chr12 3780445 3780701 -140501788 - MER102b DNA MER1_type -3 338 56 1650 324 25 45 chr12 3781248 3782008 -140500481 + BaEV-int LTR ERV1 3104 3877 -3908 2295 92 0 0 chr12 3782008 3782311 -140500178 + AluSq SINE Alu 1 303 -10 1650 324 25 45 chr12 3782311 3783100 -140499389 + BaEV-int LTR ERV1 3877 4680 -3105 2060 83 49 0 chr12 3783100 3783388 -140499101 + AluSg1 SINE Alu 1 302 -7 1650 324 25 45 chr12 3783388 3783489 -140499000 + BaEV-int LTR ERV1 4680 5759 -2026 233 29 29 0 chr12 3783495 3783529 -140498960 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 250 326 132 19 chr12 3783787 3784112 -140498377 + BaEV-int LTR ERV1 5923 6284 -1501 421 291 60 86 chr12 3784207 3784825 -140497664 + BaEV-int LTR ERV1 5285 5886 -763 213 227 27 40 chr12 3784931 3785006 -140497483 + A-rich Low_complexity Low_complexity 5 78 0 180 0 0 0 chr12 3785359 3785379 -140497110 + (A)n Simple_repeat Simple_repeat 1 20 0 1932 139 3 0 chr12 3785657 3785952 -140496537 + AluSx SINE Alu 1 296 -16 4018 195 51 33 chr12 3786566 3787913 -140494576 - L1MB3 LINE L1 -1 6251 1993 503 219 10 0 chr12 3787914 3788010 -140494479 - Tigger7 DNA MER2_type -1 2486 2390 * 1501 201 4 26 chr12 3788008 3788281 -140494208 - Tigger7 DNA MER2_type -2220 267 1 4826 259 69 30 chr12 3788281 3790099 -140492390 - L1MEc LINE L1 -4407 1989 100 242 296 62 0 chr12 3792708 3792789 -140489700 - MER5A DNA MER1_type -31 158 73 204 118 39 20 chr12 3792961 3793012 -140489477 + (TATAA)n Simple_repeat Simple_repeat 5 56 0 261 202 53 53 chr12 3793020 3793067 -140489422 - MER103 DNA DNA -71 95 49 2245 65 0 7 chr12 3793067 3793358 -140489131 + AluSx SINE Alu 24 312 0 261 202 53 53 chr12 3793358 3793404 -140489085 - MER103 DNA DNA -116 50 2 665 174 193 19 chr12 3793461 3793622 -140488867 - MER5A DNA MER1_type 0 189 1 1277 97 121 5 chr12 3794065 3794271 -140488218 - MER30 DNA MER1_type 0 230 1 253 284 0 84 chr12 3795204 3795299 -140487190 + MIR SINE MIR 52 138 -70 181 222 0 0 chr12 3795467 3795512 -140486977 + L2 LINE L2 3217 3261 -11 492 276 142 39 chr12 3795530 3795762 -140486727 + MIR SINE MIR 6 261 -1 620 307 56 70 chr12 3797516 3798220 -140484269 - L1ME4a LINE L1 -248 5873 5174 626 348 41 41 chr12 3798239 3798707 -140483782 + L2 LINE L2 2291 2758 -556 877 267 71 8 chr12 3799883 3800123 -140482366 - MIR SINE MIR -2 260 6 990 250 76 0 chr12 3800741 3800965 -140481524 - MIR SINE MIR -21 241 1 367 299 132 20 chr12 3800965 3801137 -140481352 - MIR SINE MIR -57 205 18 397 268 114 8 chr12 3802184 3802307 -140480182 - MIR SINE MIR -3 259 124 437 261 17 9 chr12 3802484 3802599 -140479890 - MIR SINE MIR -18 244 129 203 274 219 0 chr12 3802673 3802746 -140479743 - MIR SINE MIR -170 92 4 318 277 92 8 chr12 3803838 3803957 -140478532 - L3b LINE CR1 -176 1407 1279 3462 85 9 9 chr12 3805157 3805617 -140476872 - LTR46 LTR ERV1 0 460 1 630 248 63 71 chr12 3805785 3806023 -140476466 - MIR SINE MIR -26 236 1 230 260 0 0 chr12 3806031 3806081 -140476408 - L2 LINE L2 -21 3251 3202 520 272 15 0 chr12 3806259 3806395 -140476094 - MLT2F LTR ERVL -522 141 4 6266 229 87 62 chr12 3806407 3808212 -140474277 + L1ME2 LINE L1 2466 4225 -1959 840 175 0 14 chr12 3808212 3808355 -140474134 + AluJb SINE Alu 1 141 -171 6266 229 87 62 chr12 3808355 3810017 -140472472 + L1ME2 LINE L1 4225 6184 0 21 0 0 0 chr12 3810214 3810235 -140472254 + AT_rich Low_complexity Low_complexity 1 21 0 220 272 25 49 chr12 3810297 3810378 -140472111 - L3b LINE CR1 -188 1395 1317 880 228 28 26 chr12 3811101 3811328 -140471161 + MIR SINE MIR 18 242 -20 189 147 0 0 chr12 3812507 3812541 -140469948 + (GA)n Simple_repeat Simple_repeat 1 34 0 269 267 23 0 chr12 3812557 3812643 -140469846 + (CAGAGA)n Simple_repeat Simple_repeat 3 90 0 * 302 274 5 59 chr12 3812599 3812706 -140469783 + GA-rich Low_complexity Low_complexity 1 95 -81 1971 101 4 0 chr12 3812706 3812963 -140469526 + AluSx SINE Alu 45 302 -10 302 274 5 59 chr12 3812963 3813041 -140469448 + GA-rich Low_complexity Low_complexity 95 176 0 201 174 101 43 chr12 3813144 3813213 -140469276 - MIR SINE MIR -177 85 13 310 321 9 9 chr12 3814199 3814305 -140468184 + MIR SINE MIR 37 142 -66 228 67 0 0 chr12 3814742 3814772 -140467717 + (TCC)n Simple_repeat Simple_repeat 1 30 0 1543 272 102 105 chr12 3815800 3818122 -140464367 - L2 LINE L2 -40 3273 967 221 202 34 0 chr12 3818388 3818459 -140464030 - MIR SINE MIR -62 146 99 186 189 0 0 chr12 3818942 3818979 -140463510 + CT-rich Low_complexity Low_complexity 1 37 0 2144 257 99 11 chr12 3819045 3819656 -140462833 - L1MC4 LINE L1 -143 7899 7343 621 91 0 27 chr12 3819656 3819766 -140462723 + (TCTA)n Simple_repeat Simple_repeat 3 109 0 228 35 0 0 chr12 3819765 3819794 -140462695 + (CAGC)n Simple_repeat Simple_repeat 4 32 0 * 2144 257 99 11 chr12 3819766 3820383 -140462106 - L1MC4 LINE L1 -699 7343 6448 330 357 60 0 chr12 3821498 3821680 -140460809 + MIR SINE MIR 65 257 -5 279 300 69 64 chr12 3821962 3822195 -140460294 - L3 LINE CR1 -562 1015 782 241 277 161 65 chr12 3822292 3822447 -140460042 - L3 LINE CR1 -987 590 421 487 279 87 6 chr12 3822453 3822625 -140459864 + MIR SINE MIR 23 208 -54 547 189 47 0 chr12 3822708 3822814 -140459675 - MER63 DNA MER1_type -325 737 1 271 381 19 19 chr12 3822871 3823026 -140459463 - L3 LINE CR1 -1158 419 265 455 291 58 54 chr12 3823044 3823267 -140459222 - L2 LINE L2 0 3313 3090 730 215 11 45 chr12 3823290 3823467 -140459022 - MER63A DNA MER1_type 0 210 40 195 333 61 0 chr12 3824456 3824555 -140457934 + MIR SINE MIR 102 206 -56 255 244 11 67 chr12 3825836 3825926 -140456563 + L2 LINE L2 3174 3258 -14 238 269 75 0 chr12 3826083 3826150 -140456339 + MER91A DNA MER1_type 14 85 -111 223 109 55 18 chr12 3826382 3826437 -140456052 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 528 322 79 9 chr12 3827873 3828100 -140454389 - MIR SINE MIR -1 261 19 234 195 0 0 chr12 3828306 3828347 -140454142 + MIR SINE MIR 99 139 -123 2048 156 83 22 chr12 3828356 3828508 -140453981 - Tigger2 DNA MER2_type 0 2718 2577 2464 71 7 0 chr12 3828508 3828805 -140453684 + AluSq SINE Alu 1 299 -14 2048 156 83 22 chr12 3828805 3829062 -140453427 - Tigger2 DNA MER2_type -141 2577 2284 318 180 16 0 chr12 3829069 3829130 -140453359 - Tigger2 DNA MER2_type -2656 62 1 379 263 11 0 chr12 3829130 3829225 -140453264 + MIR SINE MIR 150 245 -17 543 259 129 24 chr12 3831667 3831837 -140450652 + MIR SINE MIR 47 234 -28 368 173 25 0 chr12 3832735 3832816 -140449673 + CT-rich Low_complexity Low_complexity 2 84 0 207 0 0 0 chr12 3832958 3832981 -140449508 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 1216 257 65 24 chr12 3833607 3834443 -140448046 - L1MCc LINE L1 -4889 1534 1138 266 269 0 30 chr12 3834860 3834927 -140447562 - L2 LINE L2 -8 3264 3200 416 273 16 16 chr12 3835047 3835168 -140447321 - MER5A DNA MER1_type -26 163 43 249 293 114 8 chr12 3835065 3835188 -140447301 + MER5A DNA MER1_type 54 189 0 * 202 352 0 14 chr12 3835207 3835278 -140447211 - MIR SINE MIR -87 121 52 822 226 86 53 chr12 3835282 3835525 -140446964 - MIR SINE MIR 0 262 12 279 262 81 114 chr12 3836259 3836408 -140446081 + MIR SINE MIR 48 191 -71 2024 120 42 0 chr12 3836453 3836737 -140445752 + AluSx SINE Alu 1 296 -16 343 284 74 0 chr12 3836979 3837074 -140445415 - MIR SINE MIR -127 135 34 345 312 19 18 chr12 3837240 3837375 -140445114 + MIR SINE MIR 10 145 -63 203 336 55 36 chr12 3838274 3838286 -140444203 - L3b LINE CR1 -233 1350 1340 1421 114 59 9 chr12 3838286 3838505 -140443984 - MER30 DNA MER1_type 0 230 1 203 336 55 36 chr12 3838505 3838602 -140443887 - L3b LINE CR1 -243 1340 1239 237 235 12 37 chr12 3838675 3838756 -140443733 - L1ME4a LINE L1 -105 6016 5938 604 128 0 0 chr12 3838839 3838917 -140443572 - AluJb SINE Alu -22 290 213 1663 164 24 24 chr12 3838947 3839239 -140443250 - AluJo SINE Alu -20 292 1 189 353 29 36 chr12 3839605 3839744 -140442745 - L3 LINE CR1 -75 1502 1365 318 50 0 0 chr12 3841044 3841084 -140441405 + (TG)n Simple_repeat Simple_repeat 2 41 0 532 312 169 61 chr12 3841910 3842301 -140440188 + L3 LINE CR1 1127 1559 -18 186 398 17 0 chr12 3842814 3842932 -140439557 - L3b LINE CR1 -185 1398 1279 418 227 273 0 chr12 3843263 3843391 -140439098 - MER5A DNA MER1_type -21 168 6 1535 156 126 58 chr12 3844755 3845120 -140437369 - MLT1B LTR MaLR 0 390 1 447 283 58 74 chr12 3845325 3845459 -140437030 - L1MC4a LINE L1 -1739 6069 5934 562 213 24 0 chr12 3845459 3845586 -140436903 - L1MD2 LINE L1 -15 6344 6215 447 283 58 74 chr12 3845586 3845762 -140436727 - L1MC4a LINE L1 -1874 5934 5764 1612 115 0 37 chr12 3846063 3846306 -140436183 - AluJo SINE Alu 0 312 79 1170 160 0 0 chr12 3847253 3847441 -140435048 + MER5A DNA MER1_type 2 189 0 315 288 25 76 chr12 3847816 3848014 -140434475 - L1MCa LINE L1 -4308 2118 1931 36 100 0 0 chr12 3848014 3848134 -140434355 + AT_rich Low_complexity Low_complexity 1 120 0 209 305 66 66 chr12 3849212 3849379 -140433110 + L2 LINE L2 3106 3272 0 502 271 0 0 chr12 3849866 3849999 -140432490 + MER94 DNA DNA 1 133 -1 232 297 44 0 chr12 3850011 3850102 -140432387 - MIR SINE MIR -55 207 113 207 302 105 0 chr12 3850095 3850181 -140432308 - MIR3 SINE MIR -111 97 3 * 195 447 0 0 chr12 3850251 3850354 -140432135 + MER5B DNA MER1_type 70 172 -6 203 352 33 22 chr12 3850560 3850651 -140431838 + L3b LINE CR1 1405 1496 -87 394 301 160 14 chr12 3851119 3851338 -140431151 - L3 LINE CR1 -114 1463 1213 303 309 70 91 chr12 3851541 3851771 -140430718 - L2 LINE L2 -18 3254 3030 1502 160 91 29 chr12 3852124 3852399 -140430090 - AluJo SINE Alu -9 303 12 190 313 71 18 chr12 3853588 3853700 -140428789 + L3b LINE CR1 1340 1457 -126 180 111 0 0 chr12 3854444 3854471 -140428018 + (TG)n Simple_repeat Simple_repeat 1 27 0 350 293 86 9 chr12 3858046 3858162 -140424327 + MIR SINE MIR 25 149 -113 436 327 116 33 chr12 3859507 3860033 -140422456 - L2 LINE L2 -1 3271 2709 393 270 38 44 chr12 3860721 3860880 -140421609 + MIR SINE MIR 34 191 -71 639 252 24 16 chr12 3861314 3861505 -140420984 + MIR SINE MIR 5 192 -51 458 311 34 28 chr12 3861663 3861840 -140420649 + L2 LINE L2 3095 3272 0 258 300 18 36 chr12 3861908 3862018 -140420471 + MIR3 SINE MIR 101 208 0 1826 147 33 52 chr12 3863753 3864121 -140418368 - MER46B DNA MER2_type 0 236 1 279 0 0 0 chr12 3864360 3864391 -140418098 + (TG)n Simple_repeat Simple_repeat 2 32 0 823 201 74 0 chr12 3864832 3864981 -140417508 - FRAM SINE Alu -24 152 1 217 200 0 0 chr12 3865011 3865056 -140417433 - MER5B DNA MER1_type -129 49 5 202 300 11 33 chr12 3865503 3865593 -140416896 + MIR SINE MIR 62 149 -59 257 313 0 0 chr12 3865902 3865966 -140416523 + G-rich Low_complexity Low_complexity 2 65 0 211 269 0 30 chr12 3866229 3866296 -140416193 + GA-rich Low_complexity Low_complexity 3 67 0 324 340 61 0 chr12 3866510 3866657 -140415832 - L3 LINE CR1 -135 1442 1287 809 104 0 14 chr12 3867362 3867506 -140414983 - L1MB4 LINE L1 0 6180 6039 245 267 102 51 chr12 3867916 3868092 -140414397 - MIR SINE MIR -2 260 76 213 250 211 0 chr12 3868558 3868634 -140413855 - L2 LINE L2 -33 3239 3148 3029 248 39 32 chr12 3870101 3871657 -140410832 + L1M4c LINE L1 916 2595 -3787 2393 86 0 7 chr12 3871657 3871959 -140410530 + AluSq SINE Alu 6 305 -8 3029 248 39 32 chr12 3871959 3872100 -140410389 + L1M4c LINE L1 2595 2733 -3649 447 293 75 28 chr12 3873064 3873276 -140409213 - MIR SINE MIR 0 262 41 1478 186 78 0 chr12 3873402 3873564 -140408925 - AluJo SINE Alu -22 290 97 468 0 0 0 chr12 3873564 3873616 -140408873 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 1478 186 78 0 chr12 3873616 3873722 -140408767 - AluJo SINE Alu -215 97 1 317 125 18 0 chr12 3874096 3874152 -140408337 + (CA)n Simple_repeat Simple_repeat 2 58 0 228 292 73 21 chr12 3874327 3874423 -140408066 - MIR3 SINE MIR -27 181 81 204 240 0 0 chr12 3875013 3875063 -140407426 + A-rich Low_complexity Low_complexity 2 51 0 309 348 44 40 chr12 3876380 3876607 -140405882 + L2 LINE L2 3028 3255 -17 189 229 167 111 chr12 3876721 3876865 -140405624 - MIR SINE MIR -46 216 65 192 288 17 17 chr12 3876974 3877033 -140405456 + L2 LINE L2 3255 3313 0 212 303 50 40 chr12 3878098 3878197 -140404292 - MIR SINE MIR -99 163 64 180 111 0 0 chr12 3878887 3878914 -140403575 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 1214 226 55 0 chr12 3878921 3879213 -140403276 - MER46C DNA MER2_type -23 315 8 254 270 79 11 chr12 3879573 3879662 -140402827 + L3 LINE CR1 1370 1464 -113 2093 103 0 0 chr12 3882125 3882397 -140400092 + AluSg1 SINE Alu 38 309 0 216 309 25 0 chr12 3883029 3883110 -140399379 + MIR SINE MIR 40 122 -86 195 129 0 0 chr12 3883341 3883372 -140399117 + (TG)n Simple_repeat Simple_repeat 2 32 0 388 324 7 21 chr12 3883871 3884016 -140398473 + MIR3 SINE MIR 45 187 -21 438 224 7 92 chr12 3884878 3885030 -140397459 - L3b LINE CR1 -235 1348 1210 542 261 147 0 chr12 3885439 3885596 -140396893 + MER5A DNA MER1_type 9 188 -1 212 178 22 0 chr12 3885720 3885765 -140396724 - MER5B DNA MER1_type -126 52 7 209 379 0 0 chr12 3887100 3887166 -140395323 - L2 LINE L2 -86 3186 3121 429 179 0 13 chr12 3887230 3887308 -140395181 + L2 LINE L2 3194 3270 -43 325 236 0 0 chr12 3887919 3887991 -140394498 + L2 LINE L2 3162 3233 -39 467 287 14 14 chr12 3888557 3888700 -140393789 + MIR3 SINE MIR 3 145 -63 917 131 12 0 chr12 3888716 3888970 -140393519 + CT-rich Low_complexity Low_complexity 1 257 0 264 149 0 0 chr12 3889050 3889097 -140393392 + (GGA)n Simple_repeat Simple_repeat 1 47 0 271 254 0 0 chr12 3889845 3889900 -140392589 + (CA)n Simple_repeat Simple_repeat 1 55 0 308 176 34 126 chr12 3890705 3890824 -140391665 + MIR SINE MIR 33 140 -68 395 328 18 41 chr12 3892634 3892672 -140389817 - MIR3 SINE MIR -8 200 163 2614 102 72 5 chr12 3892672 3893073 -140389416 + MSTA LTR MaLR 1 428 0 395 328 18 41 chr12 3893073 3893205 -140389284 - MIR3 SINE MIR -45 163 34 296 248 36 13 chr12 3893358 3893474 -140389015 + MIR SINE MIR 72 190 -71 1767 155 7 4 chr12 3896221 3896498 -140385991 - AluJo SINE Alu -10 302 25 955 216 118 0 chr12 3896631 3896988 -140385501 - L1ME4a LINE L1 -197 5924 5526 251 294 12 35 chr12 3897192 3897277 -140385212 + MIR SINE MIR 108 190 -72 183 286 29 29 chr12 3898025 3898095 -140384394 + L2 LINE L2 3199 3268 -4 3402 86 55 6 chr12 3898135 3898623 -140383866 + LTR10D LTR ERV1 2 513 0 339 301 72 57 chr12 3899333 3899383 -140383106 - L2 LINE L2 -2 3311 3263 186 103 0 0 chr12 3899383 3899412 -140383077 + (ATG)n Simple_repeat Simple_repeat 3 31 0 339 301 72 57 chr12 3899412 3899570 -140382919 - L2 LINE L2 -50 3263 3100 270 321 16 0 chr12 3899617 3899713 -140382776 + MIR SINE MIR 40 121 -87 192 179 0 0 chr12 3900174 3900213 -140382276 + (CA)n Simple_repeat Simple_repeat 2 40 0 512 286 19 26 chr12 3900963 3901117 -140381372 + L2 LINE L2 3155 3307 -6 267 368 9 9 chr12 3901135 3901241 -140381248 + L2 LINE L2 3208 3313 0 2384 96 0 0 chr12 3901780 3902081 -140380408 + AluSg SINE Alu 1 301 -9 1786 186 7 0 chr12 3902946 3903231 -140379258 - AluJo SINE Alu -25 287 1 306 104 0 42 chr12 3904421 3904469 -140378020 - L1MC4 LINE L1 -1339 6703 6658 775 53 59 6 chr12 3904481 3904650 -140377839 + (TA)n Simple_repeat Simple_repeat 1 178 0 180 339 18 0 chr12 3904710 3904766 -140377723 + L3 LINE CR1 1517 1573 -4 188 132 0 26 chr12 3904766 3904804 -140377685 + (TA)n Simple_repeat Simple_repeat 1 37 0 189 74 0 0 chr12 3905710 3905737 -140376752 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 770 259 154 54 chr12 3905739 3906333 -140376156 - L2 LINE L2 0 3313 2647 1194 241 89 51 chr12 3906337 3906785 -140375704 - L2 LINE L2 -1376 1938 1474 198 316 18 0 chr12 3906972 3907029 -140375460 + L3 LINE CR1 1517 1574 -3 216 280 0 0 chr12 3907117 3907167 -140375322 - MIR SINE MIR -12 250 201 459 264 208 6 chr12 3907619 3907778 -140374711 - MIR SINE MIR -57 205 15 220 365 44 25 chr12 3908768 3908927 -140373562 + MIR SINE MIR 37 198 -64 2155 24 8 0 chr12 3909701 3909985 -140372504 + L1PA4 LINE L1 5895 6180 0 294 271 104 21 chr12 3910390 3910486 -140372003 + L2 LINE L2 3168 3271 -1 358 172 0 23 chr12 3910517 3910604 -140371885 + GA-rich Low_complexity Low_complexity 3 87 0 229 263 18 0 chr12 3911711 3911768 -140370721 + L3 LINE CR1 1519 1576 -1 283 289 55 31 chr12 3911888 3912016 -140370473 + L1MC4a LINE L1 5844 5974 -1834 637 241 60 18 chr12 3912453 3912619 -140369870 + MIR3 SINE MIR 21 193 -15 188 184 20 0 chr12 3913494 3913543 -140368946 + (TGAA)n Simple_repeat Simple_repeat 2 51 0 270 235 66 175 chr12 3913627 3913703 -140368786 + MIR SINE MIR 88 134 -128 2417 82 0 7 chr12 3913703 3913997 -140368492 - AluSg SINE Alu -18 292 1 270 235 66 175 chr12 3913997 3914103 -140368386 + MIR SINE MIR 134 250 -12 269 315 46 0 chr12 3914770 3914878 -140367611 - MIR3 SINE MIR -7 201 89 362 331 66 22 chr12 3915429 3915610 -140366879 - L3b LINE CR1 -210 1373 1185 209 309 0 60 chr12 3917468 3917552 -140364937 + MIR3 SINE MIR 117 195 -13 215 340 117 10 chr12 3918577 3918680 -140363809 - MIR SINE MIR -142 120 7 294 95 0 0 chr12 3919925 3919967 -140362522 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 737 216 22 74 chr12 3919968 3920199 -140362290 - L2 LINE L2 -12 3301 3083 531 0 0 0 chr12 3921546 3921605 -140360884 + (CA)n Simple_repeat Simple_repeat 2 60 0 200 242 210 64 chr12 3923063 3923253 -140359236 + MIR SINE MIR 42 262 0 1435 307 134 46 chr12 3923985 3924807 -140357682 - L3 LINE CR1 -4 1573 680 374 337 132 36 chr12 3924891 3925277 -140357212 - L1 LINE L1 -3321 2825 2403 195 286 238 32 chr12 3925280 3925406 -140357083 - L3 LINE CR1 -891 686 535 2151 136 0 0 chr12 3925441 3925736 -140356753 + AluSx SINE Alu 1 295 -17 612 299 70 14 chr12 3926071 3926285 -140356204 + MIR SINE MIR 32 257 -5 195 259 24 82 chr12 3926252 3926337 -140356152 - MER5A DNA MER1_type -109 80 1 * 291 114 0 0 chr12 3927044 3927088 -140355401 + (TG)n Simple_repeat Simple_repeat 1 44 0 199 333 88 39 chr12 3927504 3927606 -140354883 - L3b LINE CR1 0 1583 1477 265 252 222 30 chr12 3927842 3927977 -140354512 - MIR3 SINE MIR -10 198 38 405 321 33 22 chr12 3929027 3929211 -140353278 + MER5A DNA MER1_type 1 186 -3 208 278 28 14 chr12 3929867 3929939 -140352550 + MER5B DNA MER1_type 48 120 -58 512 269 33 33 chr12 3931341 3931523 -140350966 - MIR3 SINE MIR -23 185 4 407 280 15 45 chr12 3932074 3932206 -140350283 - MIR3 SINE MIR -50 158 31 412 231 60 0 chr12 3932236 3932351 -140350138 - MER5A DNA MER1_type -63 126 4 924 219 64 27 chr12 3932481 3932700 -140349789 - MIR SINE MIR 0 262 36 563 312 0 87 chr12 3933757 3933975 -140348514 + MIR SINE MIR 35 233 -29 667 324 70 4 chr12 3934428 3934672 -140347817 - MIR SINE MIR -1 261 2 837 169 0 7 chr12 3936070 3936212 -140346277 + MLT1A1 LTR MaLR 1 141 -224 310 220 3 19 chr12 3936333 3936436 -140346053 + LTR16C LTR ERVL 301 438 -52 246 62 0 0 chr12 3936816 3936848 -140345641 + (TCCA)n Simple_repeat Simple_repeat 4 35 0 1869 213 5 11 chr12 3937129 3937496 -140344993 + MLT1A1 LTR MaLR 1 365 0 400 225 217 8 chr12 3938009 3938129 -140344360 - L3b LINE CR1 -228 1355 1211 628 212 75 126 chr12 3941244 3941499 -140340990 - MIR SINE MIR -4 258 17 242 256 78 22 chr12 3941542 3941632 -140340857 + MIR SINE MIR 152 246 -16 248 372 49 26 chr12 3943078 3943304 -140339185 - L3b LINE CR1 -134 1449 1219 2090 121 23 16 chr12 3943495 3943802 -140338687 - AluSg SINE Alu -1 309 1 328 325 122 18 chr12 3944236 3944522 -140337967 + L2 LINE L2 2998 3313 0 678 188 5 130 chr12 3945100 3945292 -140337197 - MER20 DNA MER1_type -4 215 48 2498 142 189 26 chr12 3945292 3945820 -140336669 + LTR18B LTR ERVL 1 614 0 3585 150 18 8 chr12 3946003 3946631 -140335858 + L1MB3 LINE L1 5546 6179 -4 353 328 83 0 chr12 3946696 3946876 -140335613 - MIR SINE MIR -21 241 47 1008 244 47 0 chr12 3946922 3947135 -140335354 - MER58A DNA MER1_type 0 224 2 21344 165 28 9 chr12 3947908 3953224 -140329265 - L1PA13 LINE L1 0 6814 1354 207 69 0 0 chr12 3953224 3953253 -140329236 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 21344 165 28 9 chr12 3953253 3954203 -140328286 - L1PA13 LINE L1 -5460 1354 423 1963 177 12 0 chr12 3954205 3954550 -140327939 - L1P LINE L1 -4173 1973 1625 * 2640 138 30 0 chr12 3954548 3954953 -140327536 - L1PA13 LINE L1 -6370 417 1 1726 188 18 3 chr12 3956630 3956966 -140325523 + MER58B DNA MER1_type 1 341 0 190 260 94 42 chr12 3957257 3957353 -140325136 - MIR SINE MIR -138 124 24 578 263 67 10 chr12 3958088 3958282 -140324207 - MIR SINE MIR -12 250 46 528 237 79 7 chr12 3958655 3958807 -140323682 + MIR3 SINE MIR 43 205 -3 375 259 112 18 chr12 3959702 3959872 -140322617 - MIR SINE MIR 0 262 77 237 65 0 0 chr12 3960003 3960034 -140322455 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 207 246 35 35 chr12 3960232 3960289 -140322200 + MIR SINE MIR 68 124 -84 186 340 104 0 chr12 3960437 3960543 -140321946 + L2 LINE L2 3155 3271 -1 600 215 14 28 chr12 3960645 3960789 -140321700 + L1ME1 LINE L1 35 176 -6220 472 274 86 0 chr12 3960789 3960906 -140321583 - MER96 DNA MER1_type? 0 175 49 356 271 194 23 chr12 3960907 3961036 -140321453 - MER96 DNA MER1_type? -24 151 1 458 318 15 0 chr12 3961036 3961168 -140321321 + L1ME1 LINE L1 169 302 -6094 * 8036 242 46 16 chr12 3961166 3963813 -140318676 + L1ME1 LINE L1 2282 5106 -1129 2257 69 42 3 chr12 3963813 3964101 -140318388 - AluY SINE Alu -12 299 1 8036 242 46 16 chr12 3964101 3965158 -140317331 + L1ME1 LINE L1 5106 6129 -106 206 346 143 9 chr12 3965934 3966151 -140316338 - L3b LINE CR1 -50 1533 1288 498 229 66 0 chr12 3966424 3966546 -140315943 + MER21B LTR ERV1 610 739 -124 455 259 0 27 chr12 3966563 3966675 -140315814 + MER63 DNA MER1_type 17 751 -311 411 220 229 0 chr12 3967180 3967289 -140315200 + MIR SINE MIR 12 145 -117 2057 133 0 10 chr12 3967327 3967620 -140314869 - AluSx SINE Alu -22 290 1 205 258 30 0 chr12 3967677 3967743 -140314746 + A-rich Low_complexity Low_complexity 1 68 0 322 261 33 26 chr12 3967940 3968093 -140314396 - L3b LINE CR1 -217 1366 1213 685 273 55 45 chr12 3968900 3969132 -140313357 + LTR16A1 LTR ERVL 147 385 -72 2428 39 0 3 chr12 3969132 3969441 -140313048 - AluY SINE Alu 0 308 1 685 273 55 45 chr12 3969441 3969515 -140312974 + LTR16A1 LTR ERVL 385 457 0 2367 92 3 0 chr12 3970212 3970504 -140311985 + AluSx SINE Alu 1 293 -19 279 262 75 19 chr12 3970521 3970628 -140311861 + MIR SINE MIR 118 230 -32 262 289 0 67 chr12 3970664 3970754 -140311735 - L1ME LINE L1 -476 5645 5562 1316 190 88 51 chr12 3971027 3971229 -140311260 - MLT1A1 LTR MaLR 0 365 143 2420 97 0 0 chr12 3971229 3971538 -140310951 + AluSc SINE Alu 1 309 0 1316 190 88 51 chr12 3971538 3971687 -140310802 - MLT1A1 LTR MaLR -222 143 1 1626 156 22 0 chr12 3971694 3971969 -140310520 - MLT1A1-int LTR MaLR -7 1728 1448 * 3293 165 34 0 chr12 3971966 3972523 -140309966 - MLT1A1-int LTR MaLR -1159 576 1 2494 143 14 32 chr12 3972984 3973416 -140309073 - MSTA LTR MaLR 0 428 5 391 264 121 22 chr12 3974899 3975081 -140307408 - L2 LINE L2 0 3313 3114 242 197 145 34 chr12 3975311 3975428 -140307061 + L1ME4a LINE L1 5991 6120 -1 195 301 60 0 chr12 3975804 3975887 -140306602 - L2 LINE L2 0 3313 3226 8436 117 20 21 chr12 3976387 3977689 -140304800 - HSMAR2 DNA Mariner -2 1300 1 192 306 14 14 chr12 3977771 3977843 -140304646 - L2 LINE L2 -211 3061 2990 712 254 47 25 chr12 3978678 3978914 -140303575 + MIR SINE MIR 18 258 -4 1305 185 68 16 chr12 3979183 3979491 -140302998 + MER33 DNA MER1_type 1 324 0 360 200 67 0 chr12 3979493 3979568 -140302921 + L2 LINE L2 3191 3270 -43 191 244 0 0 chr12 3980020 3980065 -140302424 + MIR SINE MIR 87 131 -77 2246 125 0 3 chr12 3980552 3980865 -140301624 + AluSq SINE Alu 1 312 -1 988 91 28 11 chr12 3980873 3980923 -140301566 + (GAAA)n Simple_repeat Simple_repeat 1 229 0 988 91 28 11 chr12 3980923 3981099 -140301390 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 551 70 0 23 chr12 3981123 3981209 -140301280 + (GAAA)n Simple_repeat Simple_repeat 1 84 0 183 281 18 0 chr12 3981897 3981954 -140300535 - L2 LINE L2 -8 3264 3207 965 120 0 0 chr12 3981968 3982149 -140300340 + FLAM_C SINE Alu 1 181 0 855 172 80 31 chr12 3982156 3982319 -140300170 + FRAM SINE Alu 1 163 -13 480 211 35 0 chr12 3982429 3982543 -140299946 + L1ME4a LINE L1 5956 6073 -48 339 320 93 0 chr12 3982764 3982914 -140299575 + L2 LINE L2 3102 3265 -7 262 240 240 24 chr12 3983009 3983134 -140299355 - MIR SINE MIR -30 232 81 498 299 45 0 chr12 3983563 3983720 -140298769 + MIR3 SINE MIR 13 176 -32 261 333 29 9 chr12 3983816 3983921 -140298568 + L2 LINE L2 3134 3240 -32 1223 216 144 29 chr12 3985910 3986337 -140296152 - MLT1D LTR MaLR -1 480 27 290 246 66 72 chr12 3986359 3986526 -140295963 + MER5B DNA MER1_type 1 166 -12 470 181 116 55 chr12 3986724 3986923 -140295566 - MER20B DNA MER1_type 0 783 573 610 108 12 0 chr12 3986961 3987044 -140295445 - U6 snRNA snRNA -23 84 1 521 180 10 0 chr12 3987044 3987144 -140295345 - MER20B DNA MER1_type -168 615 515 252 143 0 0 chr12 3987548 3987590 -140294899 + (A)n Simple_repeat Simple_repeat 1 42 0 2447 81 3 0 chr12 3987592 3987890 -140294599 + AluSc SINE Alu 1 299 -10 842 170 14 0 chr12 3988468 3988615 -140293874 + L1PA16 LINE L1 6015 6163 -3 234 254 0 0 chr12 3989834 3989893 -140292596 + L2 LINE L2 3212 3270 -2 2111 132 0 3 chr12 3990139 3990434 -140292055 + AluSc SINE Alu 1 294 -15 243 320 52 11 chr12 3990445 3990623 -140291866 + MIR SINE MIR 2 145 -63 476 270 90 58 chr12 3990851 3991162 -140291327 - Charlie8 DNA MER1_type -1957 460 140 1217 232 103 31 chr12 3991215 3991672 -140290817 + L1MC4a LINE L1 5688 6177 -1631 2191 176 67 5 chr12 3992341 3992772 -140289717 + MLT1C LTR MaLR 10 467 0 271 269 0 13 chr12 3994006 3994084 -140288405 + MLT1L LTR MaLR 1 77 -538 562 247 195 24 chr12 3994243 3994494 -140287995 + MLT1L LTR MaLR 310 603 -12 360 0 0 0 chr12 3994589 3994629 -140287860 + (CA)n Simple_repeat Simple_repeat 2 41 0 2507 56 0 23 chr12 3994690 3994993 -140287496 - AluY SINE Alu -15 296 1 205 286 26 13 chr12 3995031 3995108 -140287381 - L2 LINE L2 -2 3311 3234 3757 142 23 77 chr12 3995125 3995337 -140287152 + L1MA9 LINE L1 5571 5793 -519 276 30 0 0 chr12 3995337 3995370 -140287119 + (TG)n Simple_repeat Simple_repeat 1 33 0 3757 142 23 77 chr12 3995370 3995941 -140286548 + L1MA9 LINE L1 5793 6312 0 586 256 117 9 chr12 3996213 3996443 -140286046 - MIR SINE MIR -6 256 2 557 243 75 17 chr12 3996443 3996616 -140285873 + MER5A DNA MER1_type 3 185 -4 873 335 71 33 chr12 3996783 3997638 -140284851 - L2 LINE L2 -581 2733 1846 216 181 24 96 chr12 3997635 3997718 -140284771 - L2 LINE L2 -4 3268 3192 * 786 315 64 34 chr12 3997878 3998437 -140284052 - L2 LINE L2 -277 3036 2462 23 0 0 0 chr12 3998958 3998981 -140283508 + AT_rich Low_complexity Low_complexity 1 23 0 857 262 104 29 chr12 3999122 3999899 -140282590 + L1MDa LINE L1 1030 1934 -4448 325 327 36 38 chr12 3999916 4000154 -140282335 + MIR SINE MIR 20 256 -6 2330 82 10 0 chr12 4000370 4000661 -140281828 + AluSg SINE Alu 1 294 -16 191 299 15 0 chr12 4001147 4001214 -140281275 + MIR SINE MIR 47 114 -148 586 217 31 37 chr12 4001444 4001605 -140280884 + MIR SINE MIR 10 169 -93 221 150 0 0 chr12 4002291 4002331 -140280158 - MIR SINE MIR -67 141 102 298 247 37 0 chr12 4004302 4004383 -140278106 + MIR SINE MIR 83 166 -96 310 305 98 6 chr12 4005182 4005346 -140277143 + MIR SINE MIR 36 214 -48 569 110 11 0 chr12 4005593 4005684 -140276805 + L1MB3 LINE L1 6088 6179 -4 2250 119 0 19 chr12 4006208 4006573 -140275916 + AluSp SINE Alu 1 313 0 1160 108 23 11 chr12 4006899 4007075 -140275414 + MLT1A2 LTR MaLR 1 178 -196 254 138 12 50 chr12 4007075 4007155 -140275334 + CT-rich Low_complexity Low_complexity 1 77 0 727 208 126 1 chr12 4007157 4007330 -140275159 + MLT1B LTR MaLR 163 382 -8 659 208 30 86 chr12 4007852 4008049 -140274440 + MIR SINE MIR 29 214 -48 742 275 9 13 chr12 4009693 4009922 -140272567 + MIR SINE MIR 2 229 -33 389 243 29 0 chr12 4009950 4010053 -140272436 - MER94 DNA DNA -17 117 12 189 74 0 0 chr12 4010481 4010508 -140271981 + (TTG)n Simple_repeat Simple_repeat 2 28 0 428 0 19 0 chr12 4010512 4010564 -140271925 + (TG)n Simple_repeat Simple_repeat 2 54 0 2230 120 7 0 chr12 4010642 4010951 -140271538 - AluSq SINE Alu -2 311 1 237 306 126 0 chr12 4011022 4011133 -140271356 + MIR SINE MIR 21 145 -117 663 246 33 6 chr12 4011787 4011970 -140270519 + MIR SINE MIR 48 235 -27 537 110 0 0 chr12 4013027 4013118 -140269371 + (CA)n Simple_repeat Simple_repeat 1 91 0 532 150 0 50 chr12 4013373 4013473 -140269016 + MIR3 SINE MIR 85 179 -29 29 0 0 0 chr12 4013678 4013707 -140268782 + GC_rich Low_complexity Low_complexity 1 29 0 331 263 116 37 chr12 4014442 4014632 -140267857 + L2 LINE L2 2864 3068 -204 341 206 10 69 chr12 4015009 4015111 -140267378 - MIR3 SINE MIR -10 198 103 550 250 102 10 chr12 4015238 4015434 -140267055 + MIR SINE MIR 7 220 -42 238 233 0 0 chr12 4016123 4016166 -140266323 + MER45A DNA AcHobo 1 43 -135 1340 81 0 71 chr12 4016167 4016365 -140266124 - MER1B DNA MER1_type 0 339 156 266 141 14 141 chr12 4016341 4016412 -140266077 - MER1B DNA MER1_type -275 62 1 * 561 263 8 8 chr12 4016417 4016550 -140265939 + MER45A DNA AcHobo 43 175 -3 185 295 114 0 chr12 4018530 4018635 -140263854 - MIR3 SINE MIR -22 186 70 2617 95 28 8 chr12 4019279 4019636 -140262853 - THE1B LTR MaLR 0 364 1 517 310 0 11 chr12 4019954 4020128 -140262361 + MIR SINE MIR 72 243 -19 206 170 0 21 chr12 4020135 4020182 -140262307 + GA-rich Low_complexity Low_complexity 4 49 0 388 111 0 123 chr12 4020206 4020287 -140262202 + AluJo SINE Alu 81 151 -151 2283 113 147 26 chr12 4020287 4020454 -140262035 + MSTA LTR MaLR 1 147 -281 2589 87 20 0 chr12 4020454 4020799 -140261690 + THE1A LTR MaLR 1 352 -3 2283 113 147 26 chr12 4020799 4021013 -140261476 + MSTA LTR MaLR 147 428 0 553 163 0 0 chr12 4021024 4021252 -140261237 + AluJ/FRAM SINE Alu 220 447 0 181 275 25 38 chr12 4021448 4021528 -140260961 - MIR3 SINE MIR -21 187 109 315 314 71 40 chr12 4021653 4021879 -140260610 + L1ME1 LINE L1 11 243 -6616 260 289 37 23 chr12 4022260 4022459 -140260030 + L1M4b LINE L1 1035 1345 -5602 2411 97 0 0 chr12 4022471 4022770 -140259719 + AluSg SINE Alu 1 299 -11 2190 123 0 16 chr12 4022773 4023089 -140259400 + AluY SINE Alu 1 311 0 1140 254 62 18 chr12 4023102 4023503 -140258986 + L1M4b LINE L1 1209 1627 -5232 1796 256 46 49 chr12 4023510 4024354 -140258135 + L1M4b LINE L1 2273 3114 -4024 2209 238 30 30 chr12 4024426 4025032 -140257457 + L1ME1 LINE L1 394 999 -5439 328 267 57 0 chr12 4025038 4025143 -140257346 + L1MCb LINE L1 1425 1535 -5324 276 189 0 0 chr12 4025145 4025198 -140257291 + L1ME1 LINE L1 1008 1060 -5378 2056 178 37 32 chr12 4025199 4025745 -140256744 - MLT2A2 LTR ERVL 0 554 1 3321 189 53 22 chr12 4025749 4025829 -140256660 + L1ME1 LINE L1 1064 1140 -5787 2485 67 0 0 chr12 4025829 4026126 -140256363 + AluY SINE Alu 1 297 -14 3321 189 53 22 chr12 4026126 4027029 -140255460 + L1ME1 LINE L1 1140 2075 -4852 315 75 0 0 chr12 4027029 4027069 -140255420 - MLT2B1 LTR ERVL -2 462 423 396 0 0 0 chr12 4027069 4027113 -140255376 + (CA)n Simple_repeat Simple_repeat 2 45 0 377 265 0 24 chr12 4027122 4027288 -140255201 + CT-rich Low_complexity Low_complexity 1 162 0 1897 208 88 14 chr12 4027381 4027799 -140254690 - MLT2B1 LTR ERVL -71 449 1 1712 198 275 15 chr12 4027810 4028009 -140254480 + L1ME1 LINE L1 2099 2245 -4712 2647 55 0 0 chr12 4028009 4028319 -140254170 - AluY SINE Alu -1 310 1 1712 198 275 15 chr12 4028319 4028806 -140253683 + L1ME1 LINE L1 2245 2964 -3993 1369 161 5 0 chr12 4028856 4029067 -140253422 + AluSp SINE Alu 1 212 -101 374 109 0 0 chr12 4029067 4029122 -140253367 + AluSp SINE Alu 78 132 -171 2442 80 3 0 chr12 4029124 4029423 -140253066 + AluSp SINE Alu 1 300 -13 3145 210 50 21 chr12 4029426 4030350 -140252139 + L1ME1 LINE L1 2968 3919 -3038 3049 245 41 28 chr12 4030353 4031259 -140251230 + L1ME1 LINE L1 5302 6195 -950 2507 68 0 0 chr12 4031259 4031551 -140250938 + AluY SINE Alu 1 292 -19 3049 245 41 28 chr12 4031551 4031999 -140250490 + L1ME1 LINE L1 6195 6636 -509 2328 71 3 17 chr12 4031999 4032296 -140250193 + AluY SINE Alu 1 293 -18 3049 245 41 28 chr12 4032296 4032588 -140249901 + L1ME1 LINE L1 6636 7145 0 396 271 103 51 chr12 4033473 4033765 -140248724 - L2 LINE L2 -2 3311 3005 2326 66 10 30 chr12 4034914 4035218 -140247271 + AluY SINE Alu 1 298 -13 1832 112 52 75 chr12 4035433 4035648 -140246841 + THE1C LTR MaLR 1 205 -170 207 0 0 0 chr12 4035648 4035671 -140246818 + (TC)n Simple_repeat Simple_repeat 1 23 0 1832 112 52 75 chr12 4035671 4035839 -140246650 + THE1C LTR MaLR 205 375 0 927 270 206 32 chr12 4036560 4037570 -140244919 - L2 LINE L2 -38 3275 2075 285 343 62 19 chr12 4037583 4037793 -140244696 + L2 LINE L2 2661 2879 -435 373 130 0 26 chr12 4037914 4037991 -140244498 + (GGAA)n Simple_repeat Simple_repeat 4 78 0 25 0 0 0 chr12 4039116 4039141 -140243348 + AT_rich Low_complexity Low_complexity 1 25 0 1487 209 20 29 chr12 4039184 4039533 -140242956 - L1ME2 LINE L1 -28 6136 5791 3050 213 83 18 chr12 4039539 4040299 -140242190 - L1ME1 LINE L1 -35 6200 5392 861 60 0 0 chr12 4040318 4040418 -140242071 + AluSg SINE Alu 1 100 -210 2265 112 0 3 chr12 4040466 4040769 -140241720 + AluSg SINE Alu 1 302 -8 7156 216 93 89 chr12 4040769 4041524 -140240965 - L1ME1 LINE L1 -846 5369 4619 1113 184 44 0 chr12 4041524 4041730 -140240759 - AluJb SINE Alu -14 298 84 7156 216 93 89 chr12 4041730 4042411 -140240078 - L1ME1 LINE L1 -1596 4619 3943 2444 113 88 10 chr12 4042411 4042808 -140239681 + MSTA LTR MaLR 1 428 0 7156 216 93 89 chr12 4042808 4043019 -140239470 - L1ME1 LINE L1 -2272 3943 3734 2273 103 3 19 chr12 4043019 4043329 -140239160 - AluSx SINE Alu -7 305 1 7156 216 93 89 chr12 4043329 4043766 -140238723 - L1ME1 LINE L1 -2481 3734 3300 2279 99 6 13 chr12 4043766 4044078 -140238411 - AluSq SINE Alu -3 310 1 7156 216 93 89 chr12 4044078 4044162 -140238327 - L1ME1 LINE L1 -2915 3300 3218 622 216 0 43 chr12 4044162 4044323 -140238166 - FLAM_A SINE Alu 0 133 1 7156 216 93 89 chr12 4044323 4045506 -140236983 - L1ME1 LINE L1 -2997 3218 1853 2482 72 7 3 chr12 4045506 4045813 -140236676 - AluY SINE Alu -3 308 1 7156 216 93 89 chr12 4045813 4046029 -140236460 - L1ME1 LINE L1 -4362 1853 1639 4919 139 57 4 chr12 4046021 4047058 -140235431 - L1MB1 LINE L1 0 6168 5078 * 9141 73 22 4 chr12 4047051 4048310 -140234179 - L1PA7 LINE L1 -897 5249 3969 6958 49 2 24 chr12 4048310 4049224 -140233265 + L1PA7 LINE L1 5260 6154 0 3364 188 57 6 chr12 4049226 4050017 -140232472 - L1MB1 LINE L1 -1056 5090 4260 467 301 0 7 chr12 4050364 4050507 -140231982 - L1ME1 LINE L1 -6120 276 135 1627 141 44 0 chr12 4050602 4050872 -140231617 - MSTB LTR MaLR -144 282 1 212 220 160 0 chr12 4050876 4050926 -140231563 - MIR SINE MIR -200 62 5 687 226 61 8 chr12 4052064 4052249 -140230240 + LTR50 LTR ERVL 1 176 -600 472 257 153 8 chr12 4052419 4052668 -140229821 + LTR50 LTR ERVL 503 787 -8 338 196 244 11 chr12 4052788 4052917 -140229572 + MIR SINE MIR 2 159 -49 382 178 0 0 chr12 4052922 4052995 -140229494 + MER53 DNA DNA 36 108 -81 2174 82 0 4 chr12 4053063 4053342 -140229147 + AluSx SINE Alu 1 278 -34 192 97 0 0 chr12 4053953 4053984 -140228505 + (CA)n Simple_repeat Simple_repeat 2 32 0 713 270 172 0 chr12 4055231 4055435 -140227054 - MIR SINE MIR -21 241 3 2504 81 0 0 chr12 4055499 4055809 -140226680 + AluY SINE Alu 1 310 -1 214 231 0 0 chr12 4057119 4057158 -140225331 - L3 LINE CR1 -11 1566 1528 260 290 0 0 chr12 4057249 4057311 -140225178 - L2 LINE L2 -2 3311 3250 674 310 49 13 chr12 4057496 4057722 -140224767 - L3b LINE CR1 -123 1460 1227 1673 228 68 36 chr12 4058152 4058678 -140223811 + MER74B LTR ERVL 58 600 -22 695 187 231 93 chr12 4058685 4059006 -140223483 - MLT1A1 LTR MaLR 0 365 1 407 181 37 0 chr12 4059803 4059891 -140222598 + MLT1A2 LTR MaLR 1 97 -268 * 598 161 34 1 chr12 4059883 4060006 -140222483 + MLT1A2 LTR MaLR 256 467 0 389 314 16 0 chr12 4060258 4060382 -140222107 + L3 LINE CR1 691 816 -761 396 242 87 0 chr12 4060451 4060612 -140221877 - L1ME4a LINE L1 -225 5896 5722 416 347 181 14 chr12 4060654 4061095 -140221394 + L3 LINE CR1 802 1316 -261 320 313 35 76 chr12 4061261 4061459 -140221030 + L2 LINE L2 2085 2274 -1040 289 303 123 59 chr12 4061526 4061948 -140220541 - MLT1K LTR MaLR -3 585 137 319 316 48 119 chr12 4062306 4062743 -140219746 + L2 LINE L2 2857 3262 -10 330 298 172 40 chr12 4063484 4063682 -140218807 - MIR SINE MIR -18 244 21 321 306 144 39 chr12 4064474 4064703 -140217786 + L3b LINE CR1 1304 1556 -27 2486 61 7 3 chr12 4065134 4065444 -140217045 + AluY SINE Alu 1 311 0 252 311 185 0 chr12 4065448 4065583 -140216906 + L3 LINE CR1 1345 1504 -73 278 296 144 24 chr12 4065621 4065746 -140216743 + L2 LINE L2 3133 3272 0 2197 226 42 4 chr12 4065805 4066358 -140216131 + MER90 LTR ERV1 1 574 -1 1012 223 34 13 chr12 4066489 4066722 -140215767 - MIR SINE MIR -2 260 23 526 290 22 65 chr12 4067093 4067324 -140215165 + L2 LINE L2 2976 3196 -76 265 286 29 14 chr12 4067632 4067702 -140214787 - MIR SINE MIR -104 104 34 2187 129 0 10 chr12 4071024 4071334 -140211155 + AluSx SINE Alu 1 307 -5 591 111 0 0 chr12 4071334 4071415 -140211074 + (GGAA)n Simple_repeat Simple_repeat 1 81 0 628 119 23 40 chr12 4071415 4071591 -140210898 + GA-rich Low_complexity Low_complexity 3 175 0 267 321 19 38 chr12 4071623 4071729 -140210760 - L3 LINE CR1 -52 1525 1422 210 315 71 16 chr12 4073194 4073321 -140209168 + L3b LINE CR1 1350 1483 -100 2392 88 0 7 chr12 4073515 4073821 -140208668 - AluSx SINE Alu -8 304 1 201 324 44 0 chr12 4075360 4075428 -140207061 - L3 LINE CR1 -19 1558 1488 21 36 0 0 chr12 4075878 4075906 -140206583 + AT_rich Low_complexity Low_complexity 1 28 0 705 298 187 39 chr12 4075943 4076527 -140205962 - L3 LINE CR1 -114 1463 794 669 294 216 13 chr12 4076941 4077329 -140205160 - L3 LINE CR1 -787 790 324 1368 133 0 5 chr12 4077438 4077626 -140204863 + AluSg/x SINE Alu 104 290 -22 2392 82 0 0 chr12 4077626 4077920 -140204569 + AluY SINE Alu 1 294 -17 360 302 121 13 chr12 4078538 4078687 -140203802 - MER5A DNA MER1_type -24 165 1 918 321 181 28 chr12 4078714 4080070 -140202419 + L2 LINE L2 1083 2645 -669 902 189 19 53 chr12 4080086 4080292 -140202197 - MER20 DNA MER1_type -20 199 1 509 311 28 6 chr12 4080292 4080469 -140202020 + L2 LINE L2 2660 2840 -474 193 364 116 23 chr12 4080525 4080698 -140201791 + L2 LINE L2 2788 2976 -338 300 300 12 0 chr12 4080859 4080939 -140201550 + L2 LINE L2 3228 3308 -5 255 254 61 50 chr12 4081699 4081880 -140200609 + L1MC5 LINE L1 7732 7914 -47 2667 17 0 3 chr12 4083033 4083334 -140199155 + AluY SINE Alu 1 300 -11 251 269 17 34 chr12 4084069 4084188 -140198301 - L1MC4a LINE L1 -1874 5934 5818 339 215 0 0 chr12 4084188 4084253 -140198236 + L2 LINE L2 3249 3313 0 838 287 108 25 chr12 4084254 4084350 -140198139 - L1MC4a LINE L1 -1986 5822 5735 2175 111 3 3 chr12 4084350 4084648 -140197841 + AluSx SINE Alu 1 298 -14 838 287 108 25 chr12 4084648 4084948 -140197541 - L1MC4a LINE L1 -2073 5735 5393 2177 77 3 24 chr12 4086447 4086745 -140195744 - AluY SINE Alu -19 292 1 2203 89 13 7 chr12 4088983 4089287 -140193202 + AluSg SINE Alu 1 306 -4 549 327 80 9 chr12 4090075 4090301 -140192188 + MIR SINE MIR 5 246 -16 811 240 144 0 chr12 4091363 4091592 -140190897 - MIR SINE MIR 0 262 1 293 251 18 104 chr12 4092157 4092320 -140190169 + MIR SINE MIR 79 227 -35 1484 194 17 17 chr12 4094034 4094323 -140188166 + AluJo SINE Alu 1 289 -23 2484 261 46 24 chr12 4094343 4095067 -140187422 + L1M4b LINE L1 69 816 -6043 2177 134 0 3 chr12 4095067 4095381 -140187108 + AluSq SINE Alu 1 313 0 2484 261 46 24 chr12 4095381 4095507 -140186982 + L1M4b LINE L1 816 938 -5921 227 143 0 127 chr12 4095740 4095803 -140186686 + L1M4b LINE L1 1160 1214 -5645 1883 223 44 77 chr12 4096016 4097217 -140185272 + L1M4b LINE L1 1205 2329 -4630 4209 164 11 9 chr12 4097342 4098087 -140184402 + L1MA4 LINE L1 1241 1986 -4579 3566 209 46 30 chr12 4098114 4098764 -140183725 + L1MA4 LINE L1 3344 3982 -3583 183 42 0 0 chr12 4098764 4098788 -140183701 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3566 209 46 30 chr12 4098788 4099458 -140183031 + L1MA4 LINE L1 3982 4694 -2871 181 0 0 65 chr12 4099869 4099900 -140182589 + (CCG)n Simple_repeat Simple_repeat 3 31 0 9749 148 25 39 chr12 4106993 4107195 -140175294 + L1MA4 LINE L1 4668 4871 -2848 2511 75 0 3 chr12 4107195 4107503 -140174986 + AluY SINE Alu 5 311 0 9749 148 25 39 chr12 4107503 4107523 -140174966 + L1MA4 LINE L1 4871 4890 -2829 1645 193 30 3 chr12 4107523 4107823 -140174666 + AluJo SINE Alu 5 312 0 9749 148 25 39 chr12 4107823 4110675 -140171814 + L1MA4 LINE L1 4890 7707 -12 30 45 0 0 chr12 4110676 4110720 -140171769 + AT_rich Low_complexity Low_complexity 1 44 0 4661 154 35 5 chr12 4111020 4111847 -140170642 + Tigger4(Zombi) DNA MER2_type 1 852 -1879 37200 74 8 9 chr12 4111858 4117995 -140164494 + L1PA6 LINE L1 11 6143 -11 9001 127 29 14 chr12 4118003 4119520 -140162969 + Tigger4(Zombi) DNA MER2_type 835 2373 -358 2181 116 0 26 chr12 4119524 4119834 -140162655 + AluSx SINE Alu 1 302 -10 602 188 23 0 chr12 4119834 4119962 -140162527 + Tigger4(Zombi) DNA MER2_type 2542 2672 -59 936 228 46 49 chr12 4119967 4120000 -140162489 + L1MEc LINE L1 2181 2213 -4002 2104 105 14 3 chr12 4120000 4120294 -140162195 + AluSg SINE Alu 1 297 -13 936 228 46 49 chr12 4120294 4120640 -140161849 + L1MEc LINE L1 2213 2526 -3689 * 1659 240 82 99 chr12 4120639 4121370 -140161119 + MLT1A1-int LTR MaLR 410 1121 -250 1503 150 13 86 chr12 4121370 4121684 -140160805 - AluJo SINE Alu -11 301 11 1659 240 82 99 chr12 4121684 4121927 -140160562 + MLT1A1-int LTR MaLR 1121 1367 -4 623 212 36 7 chr12 4121938 4122075 -140160414 + MLT1A1 LTR MaLR 1 141 -224 1076 204 58 10 chr12 4122080 4122459 -140160030 - L1MC/D LINE L1 -743 5472 5150 2197 82 0 4 chr12 4122459 4122738 -140159751 + AluY SINE Alu 1 278 -33 345 104 68 0 chr12 4122754 4122837 -140159652 + L1M LINE L1 5337 5427 -742 1676 155 6 79 chr12 4122862 4123178 -140159311 + AluJo SINE Alu 1 293 -19 265 225 0 0 chr12 4123188 4123268 -140159221 - L1MC/D LINE L1 -1086 5129 5050 28 71 0 0 chr12 4123272 4123328 -140159161 + AT_rich Low_complexity Low_complexity 1 56 0 2498 232 125 6 chr12 4123328 4124211 -140158278 - L1MC/D LINE L1 -1159 5056 4069 1946 233 67 42 chr12 4124211 4124790 -140157699 - MER77 LTR ERV1 0 605 12 5019 250 60 9 chr12 4124798 4126725 -140155764 - L1MEc LINE L1 -2139 4076 2084 662 279 77 0 chr12 4126861 4127108 -140155381 + L2 LINE L2 1897 2162 -1152 1866 143 4 0 chr12 4128895 4129161 -140153328 + AluSx SINE Alu 1 267 -45 457 261 232 44 chr12 4129161 4129544 -140152945 + L2 LINE L2 2213 2667 -647 1808 196 70 21 chr12 4129545 4130019 -140152470 - MLT1D LTR MaLR -8 497 1 891 301 117 24 chr12 4130038 4130623 -140151866 + L2 LINE L2 2670 3295 -18 1156 210 0 13 chr12 4130640 4130869 -140151620 - Tigger7 DNA MER2_type -486 247 22 567 242 8 8 chr12 4131335 4131463 -140151026 - L2 LINE L2 -2 3311 3184 1563 168 90 9 chr12 4132008 4132330 -140150159 + MER7A DNA MER2_type 1 346 0 3604 162 56 9 chr12 4132484 4133158 -140149331 + MER39 LTR ERV1 1 706 -1 854 115 0 0 chr12 4133533 4133663 -140148826 + AluSg/x SINE Alu 172 301 -9 309 248 239 0 chr12 4134421 4134534 -140147955 + MIR SINE MIR 120 259 -3 2098 117 0 7 chr12 4134978 4135277 -140147212 - AluSx SINE Alu -15 297 1 207 178 44 0 chr12 4135582 4135627 -140146862 + (CATATA)n Simple_repeat Simple_repeat 5 51 0 238 246 172 30 chr12 4135886 4136089 -140146400 - L1 LINE L1 -1710 4436 4205 2214 112 3 0 chr12 4136223 4136519 -140145970 - AluSx SINE Alu -12 300 4 346 311 35 44 chr12 4136550 4136916 -140145573 - L1 LINE L1 -2153 3993 3631 251 209 104 15 chr12 4137386 4137453 -140145036 + Charlie8 DNA MER1_type 172 244 -2173 511 188 21 0 chr12 4137662 4137758 -140144731 - Tigger7 DNA MER2_type -2 2489 2392 * 901 244 81 8 chr12 4137757 4137796 -140144693 - Tigger7 DNA MER2_type -467 266 231 14796 122 19 30 chr12 4137796 4138016 -140144473 - Tigger1 DNA MER2_type 0 2418 2197 2337 96 0 0 chr12 4138016 4138308 -140144181 + AluSx SINE Alu 1 292 -20 14796 122 19 30 chr12 4138308 4139666 -140142823 - Tigger1 DNA MER2_type -221 2197 871 2280 103 0 10 chr12 4139666 4139976 -140142513 - AluY SINE Alu -3 308 2 14796 122 19 30 chr12 4139976 4140839 -140141650 - Tigger1 DNA MER2_type -1547 871 1 901 244 81 8 chr12 4140839 4141045 -140141444 - Tigger7 DNA MER2_type -502 231 3 1693 156 69 39 chr12 4141053 4141386 -140141103 - MER2 DNA MER2_type -1 343 1 884 255 91 98 chr12 4142881 4143308 -140139181 - L2 LINE L2 0 3313 2890 297 0 0 0 chr12 4143309 4143342 -140139147 + (GA)n Simple_repeat Simple_repeat 1 33 0 * 303 104 0 0 chr12 4143341 4143389 -140139100 + (TG)n Simple_repeat Simple_repeat 2 49 0 545 288 56 10 chr12 4143504 4143717 -140138772 - MIR SINE MIR -22 240 19 302 139 58 105 chr12 4144200 4144286 -140138203 + L1MB8 LINE L1 6095 6176 -2 979 263 3 24 chr12 4144557 4144854 -140137635 - AluY SINE Alu -9 302 12 226 333 12 0 chr12 4144948 4145032 -140137457 - AluSg/x SINE Alu -15 285 201 453 220 0 0 chr12 4145255 4145373 -140137116 + L1MEc LINE L1 996 1113 -5283 2297 91 0 29 chr12 4145379 4145687 -140136802 + AluY SINE Alu 4 302 -9 381 207 12 0 chr12 4145688 4145770 -140136719 + L1MB5 LINE L1 6082 6164 -10 717 170 15 0 chr12 4145816 4145951 -140136538 + L1PA16 LINE L1 6025 6161 -5 25 0 0 0 chr12 4145951 4145976 -140136513 + AT_rich Low_complexity Low_complexity 1 25 0 2428 58 0 19 chr12 4147120 4147428 -140135061 - AluY SINE Alu -9 302 1 646 94 0 0 chr12 4147511 4147596 -140134893 - AluSg/x SINE Alu -25 284 200 531 271 39 13 chr12 4147707 4147862 -140134627 + MIR3 SINE MIR 41 199 -9 228 339 34 0 chr12 4147927 4147986 -140134503 - L2 LINE L2 -72 3200 3140 189 231 0 0 chr12 4148842 4148881 -140133608 + L3b LINE CR1 1539 1577 -6 230 91 68 0 chr12 4149001 4149045 -140133444 + A-rich Low_complexity Low_complexity 2 48 0 641 128 220 0 chr12 4149414 4149523 -140132966 - FLAM_C SINE Alu 0 133 1 1511 158 31 8 chr12 4149694 4149976 -140132513 - AluJo SINE Alu 0 312 35 813 315 193 16 chr12 4149987 4150676 -140131813 - L3 LINE CR1 -25 1552 742 598 290 21 29 chr12 4150675 4150913 -140131576 + MIR SINE MIR 27 262 0 * 652 333 115 9 chr12 4150928 4151364 -140131125 - L3 LINE CR1 -835 742 261 501 371 55 4 chr12 4151448 4151685 -140130804 - L3 LINE CR1 -1302 275 27 449 295 20 7 chr12 4151711 4151860 -140130629 + MIR3 SINE MIR 54 204 -4 324 92 0 58 chr12 4152291 4152357 -140130132 - Alu SINE Alu 0 302 247 2282 99 0 0 chr12 4152389 4152691 -140129798 - AluY SINE Alu -9 302 1 233 304 32 70 chr12 4153627 4153725 -140128764 - L2 LINE L2 0 3313 3213 2291 89 10 23 chr12 4153725 4154029 -140128460 + AluY SINE Alu 1 300 -11 243 0 0 0 chr12 4154029 4154056 -140128433 + (TA)n Simple_repeat Simple_repeat 2 28 0 408 20 0 0 chr12 4154055 4154104 -140128385 + (GA)n Simple_repeat Simple_repeat 2 50 0 233 304 32 70 chr12 4154056 4154162 -140128327 - L2 LINE L2 -98 3215 3162 272 307 79 10 chr12 4155787 4155989 -140126500 + L2 LINE L2 1802 2017 -1297 549 55 0 0 chr12 4156104 4156177 -140126312 + (TC)n Simple_repeat Simple_repeat 1 73 0 180 295 147 11 chr12 4156181 4156276 -140126213 + L2 LINE L2 2101 2208 -1106 1747 176 3 3 chr12 4156347 4156666 -140125823 - AluJo SINE Alu 0 319 1 2929 277 77 38 chr12 4156879 4158626 -140123863 + L2 LINE L2 1493 3313 0 308 208 78 0 chr12 4159261 4159338 -140123151 - MER102a DNA MER1_type -8 322 240 409 319 22 0 chr12 4159399 4159537 -140122952 - MER102a DNA MER1_type -173 157 17 243 314 146 15 chr12 4159579 4159716 -140122773 + MIR SINE MIR 37 191 -71 190 73 49 24 chr12 4159951 4159992 -140122497 + T-rich Low_complexity Low_complexity 2 43 0 1180 350 85 20 chr12 4160528 4161476 -140121013 + L3 LINE CR1 31 1040 -537 738 282 95 16 chr12 4161561 4161926 -140120563 - L1ME4a LINE L1 -11 6093 5698 1383 289 40 13 chr12 4161936 4162413 -140120076 + L3 LINE CR1 1088 1577 0 307 310 9 26 chr12 4162592 4162708 -140119781 - MIR SINE MIR -50 212 99 469 307 82 23 chr12 4163350 4163656 -140118833 - L1ME4a LINE L1 -1299 4830 4507 812 272 113 33 chr12 4163786 4164176 -140118313 + MLT1L LTR MaLR 195 615 0 353 289 122 27 chr12 4164264 4164554 -140117935 - L1ME4a LINE L1 -1779 4350 4030 214 37 0 0 chr12 4164576 4164603 -140117886 + MER91A DNA MER1_type 37 63 -127 593 225 71 50 chr12 4164667 4164849 -140117640 - MLT1J LTR MaLR 0 511 326 266 256 83 47 chr12 4165206 4165569 -140116920 - L1ME4a LINE L1 -2933 3196 2821 903 142 103 0 chr12 4165601 4165756 -140116733 + AluSg/x SINE Alu 134 304 -6 280 309 103 15 chr12 4165777 4166371 -140116118 - L1ME4a LINE L1 -3326 2803 2138 1478 178 94 22 chr12 4166392 4166712 -140115777 + MER2 DNA MER2_type 1 343 -1 2452 58 41 0 chr12 4166884 4167177 -140115312 + AluY SINE Alu 1 305 -6 2192 106 10 0 chr12 4167352 4167644 -140114845 - AluSg1 SINE Alu -14 295 1 687 287 20 45 chr12 4167903 4168255 -140114234 - L1ME4a LINE L1 -4882 1237 895 708 263 174 57 chr12 4168291 4168751 -140113738 + MLT1H LTR MaLR 36 549 0 381 22 0 0 chr12 4169476 4169522 -140112967 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2145 97 4 0 chr12 4169524 4169803 -140112686 - AluY SINE Alu -31 280 1 1059 100 0 0 chr12 4169806 4169936 -140112553 - AluSg SINE Alu -180 130 1 22 35 0 0 chr12 4170069 4170098 -140112391 + AT_rich Low_complexity Low_complexity 1 29 0 359 323 47 8 chr12 4170460 4170587 -140111902 + L2 LINE L2 3141 3272 0 2516 56 0 7 chr12 4170956 4171259 -140111230 - AluY SINE Alu -10 301 1 2388 44 3 99 chr12 4172528 4172872 -140109617 + AluY SINE Alu 1 311 0 821 191 174 4 chr12 4173006 4173277 -140109212 - Charlie5 DNA MER1_type 0 2618 2 2639 59 0 0 chr12 4173830 4174137 -140108352 + AluY SINE Alu 1 307 -4 2501 125 5 16 chr12 4174837 4175205 -140107284 + THE1B LTR MaLR 1 364 0 230 152 51 63 chr12 4175241 4175320 -140107169 - L1M4c LINE L1 -5032 1352 1275 680 101 36 34 chr12 4175881 4176041 -140106448 - MER30 DNA MER1_type 0 230 1 460 324 56 14 chr12 4176041 4176183 -140106306 + MER91A DNA MER1_type 21 168 -28 1454 182 4 29 chr12 4176259 4176560 -140105929 + AluJo SINE Alu 15 308 0 183 42 0 0 chr12 4177485 4177509 -140104980 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2366 62 0 0 chr12 4177509 4177785 -140104704 - AluY SINE Alu -35 276 1 22 0 0 0 chr12 4177913 4177935 -140104554 + AT_rich Low_complexity Low_complexity 1 22 0 436 357 20 25 chr12 4177951 4178195 -140104294 - L2 LINE L2 -108 3164 2922 368 261 8 76 chr12 4178322 4178441 -140104048 - MLT1-int LTR MaLR -233 1138 1028 285 346 15 15 chr12 4178605 4178735 -140103754 - MLT1-int LTR MaLR -478 893 764 2286 113 7 0 chr12 4179004 4179313 -140103176 - AluSx SINE Alu -1 311 1 506 267 46 41 chr12 4179414 4179609 -140102880 - MLT1-int LTR MaLR -777 594 399 2234 130 30 28 chr12 4179621 4179983 -140102506 + THE1B LTR MaLR 1 363 -1 407 288 35 40 chr12 4180030 4180228 -140102261 - MLT1-int LTR MaLR -1158 213 17 2113 132 0 0 chr12 4180676 4180979 -140101510 - AluSx SINE Alu -9 303 1 351 353 0 20 chr12 4181074 4181224 -140101265 + MIR SINE MIR 85 231 -31 297 0 0 0 chr12 4181431 4181464 -140101025 + (A)n Simple_repeat Simple_repeat 1 33 0 183 42 0 0 chr12 4183056 4183080 -140099409 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 234 81 0 0 chr12 4183083 4183120 -140099369 + (T)n Simple_repeat Simple_repeat 1 37 0 247 161 195 11 chr12 4184604 4184691 -140097798 - MIR SINE MIR -99 163 61 257 191 209 29 chr12 4185245 4185350 -140097139 + MIR SINE MIR 50 173 -89 374 278 21 0 chr12 4185416 4185513 -140096976 + MIR SINE MIR 164 262 0 372 43 0 0 chr12 4185534 4185580 -140096909 + (CAT)n Simple_repeat Simple_repeat 3 48 0 192 339 83 18 chr12 4185904 4186013 -140096476 - L2 LINE L2 -19 3294 3179 293 211 0 0 chr12 4186026 4186083 -140096406 - MER5A DNA MER1_type -3 186 130 213 121 0 0 chr12 4187006 4187039 -140095450 + (TCCC)n Simple_repeat Simple_repeat 2 34 0 254 364 28 0 chr12 4188439 4188582 -140093907 + L2 LINE L2 2914 3060 -212 338 136 17 0 chr12 4188730 4188789 -140093700 - MER91 DNA MER1_type -14 126 67 3623 149 0 12 chr12 4189542 4190133 -140092356 + L1PA16 LINE L1 5582 6165 -1 408 279 107 46 chr12 4190378 4190575 -140091914 + MIR SINE MIR 20 228 -34 418 370 67 26 chr12 4191051 4191392 -140091097 + L2 LINE L2 2912 3266 -6 180 111 0 0 chr12 4192031 4192058 -140090431 + (TG)n Simple_repeat Simple_repeat 2 28 0 219 333 14 0 chr12 4193379 4193451 -140089038 + MIR3 SINE MIR 127 199 -9 324 247 0 12 chr12 4195890 4195971 -140086518 + MIR SINE MIR 69 148 -114 226 160 0 40 chr12 4196002 4196052 -140086437 + L2 LINE L2 3265 3312 -1 1123 180 52 14 chr12 4196276 4196487 -140086002 - MER20 DNA MER1_type 0 219 1 7696 167 28 46 chr12 4196654 4197717 -140084772 + L1MCa LINE L1 3 1029 -5397 2501 72 0 0 chr12 4197717 4198022 -140084467 + AluY SINE Alu 1 305 -6 7696 167 28 46 chr12 4198022 4198555 -140083934 + L1MCa LINE L1 1029 1570 -4856 3886 180 27 70 chr12 4198536 4198852 -140083637 + L1MB1 LINE L1 2256 2584 -3864 * 2147 92 0 7 chr12 4198852 4199136 -140083353 + AluY SINE Alu 1 317 0 295 29 0 0 chr12 4199136 4199171 -140083318 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3886 180 27 70 chr12 4199171 4199937 -140082552 + L1MB1 LINE L1 2584 6341 -107 1992 34 0 8 chr12 4199939 4200177 -140082312 + AluY SINE Alu 1 236 -75 6615 186 68 34 chr12 4200195 4200999 -140081490 + L1MC3 LINE L1 5127 5902 -244 2007 111 50 0 chr12 4200999 4201279 -140081210 + AluSg SINE Alu 1 294 -16 6615 186 68 34 chr12 4201279 4202037 -140080452 + L1MC3 LINE L1 5902 5302 -844 222 37 0 0 chr12 4202037 4202064 -140080425 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6615 186 68 34 chr12 4202064 4202171 -140080318 + L1MC3 LINE L1 5301 5403 -743 262 233 0 0 chr12 4202268 4202311 -140080178 + LTR49-int LTR ERV1 1244 1286 -5045 1044 49 0 21 chr12 4202372 4202516 -140079973 + L1MA5 LINE L1 6158 6298 -2 567 230 58 0 chr12 4203386 4203525 -140078964 + MIR SINE MIR 106 252 -10 306 304 25 50 chr12 4203612 4203773 -140078716 + L2 LINE L2 2935 3091 -181 185 324 162 14 chr12 4204691 4204839 -140077650 - L3b LINE CR1 -310 1273 1104 1546 87 0 5 chr12 4204853 4205048 -140077441 + AluY SINE Alu 102 295 -16 2913 214 98 50 chr12 4205108 4205164 -140077325 - L1MC4 LINE L1 -3 8039 7987 1923 137 21 3 chr12 4205164 4205448 -140077041 + AluJb SINE Alu 1 289 -23 2913 214 98 50 chr12 4205448 4205622 -140076867 - L1MC4 LINE L1 -55 7987 7823 2309 125 0 0 chr12 4205622 4205933 -140076556 + AluSq SINE Alu 1 311 -2 2913 214 98 50 chr12 4205933 4205989 -140076500 - L1MC4 LINE L1 -219 7823 7771 2525 64 0 0 chr12 4205989 4206285 -140076204 + AluY SINE Alu 1 296 -15 2913 214 98 50 chr12 4206285 4207011 -140075478 - L1MC4 LINE L1 -271 7771 6977 185 317 33 0 chr12 4208773 4208833 -140073656 + MIR SINE MIR 86 147 -115 295 328 8 0 chr12 4208834 4208953 -140073536 + (TA)n Simple_repeat Simple_repeat 1 120 0 245 261 31 0 chr12 4208968 4209033 -140073456 - MIR SINE MIR -115 147 81 994 339 133 6 chr12 4209127 4209970 -140072519 + L2 LINE L2 1806 2755 -559 1901 166 54 58 chr12 4209996 4210424 -140072065 + MSTB1 LTR MaLR 7 432 0 276 370 43 24 chr12 4210424 4210743 -140071746 + L2 LINE L2 2747 3069 -203 1855 156 11 3 chr12 4211431 4211714 -140070775 - AluSx SINE Alu -18 294 10 830 196 26 0 chr12 4211788 4211941 -140070548 - MER45A DNA AcHobo -1 177 21 408 239 62 18 chr12 4211987 4212100 -140070389 - L2 LINE L2 0 3313 3196 951 57 0 0 chr12 4212100 4212222 -140070267 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 354 68 0 0 chr12 4212222 4212266 -140070223 - Alu SINE Alu -18 284 241 2136 108 4 0 chr12 4212294 4212596 -140069893 - AluSg SINE Alu 0 304 2 2456 151 66 11 chr12 4212739 4213176 -140069313 + LOR1b LTR ERV1 1 461 0 203 293 0 24 chr12 4214013 4214095 -140068394 + CT-rich Low_complexity Low_complexity 1 80 0 224 0 0 61 chr12 4214372 4214405 -140068084 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 187 388 70 0 chr12 4215424 4215553 -140066936 + L2 LINE L2 2555 2692 -622 855 297 93 41 chr12 4215554 4215606 -140066883 - L1MEd LINE L1 -824 1666 1618 991 182 41 45 chr12 4215606 4215654 -140066835 - MER20 DNA MER1_type 0 219 172 2685 32 0 3 chr12 4215654 4215964 -140066525 - AluY SINE Alu -2 309 1 991 182 41 45 chr12 4215964 4216135 -140066354 - MER20 DNA MER1_type -47 172 1 855 297 93 41 chr12 4216135 4217276 -140065213 - L1MEd LINE L1 -872 1618 538 2166 106 6 41 chr12 4217276 4217596 -140064893 - AluSc SINE Alu 0 309 1 855 297 93 41 chr12 4217596 4217655 -140064834 - L1MEd LINE L1 -1952 538 1610 1929 163 10 0 chr12 4217655 4217956 -140064533 - AluJo SINE Alu -8 304 1 855 297 93 41 chr12 4217956 4218895 -140063594 - L1MEd LINE L1 -879 1611 723 231 119 0 0 chr12 4218918 4218960 -140063529 - AluJb SINE Alu -2 300 259 1330 176 0 5 chr12 4218961 4219183 -140063306 - AluJb SINE Alu -91 221 1 712 317 67 70 chr12 4219263 4219668 -140062821 - L1MEd LINE L1 -5446 673 269 2601 53 0 3 chr12 4219668 4219969 -140062520 - AluY SINE Alu -11 300 1 712 317 67 70 chr12 4219969 4220232 -140062257 - L1MEd LINE L1 -5850 269 7 2395 93 0 0 chr12 4220331 4220632 -140061857 + AluSp SINE Alu 1 301 -12 231 250 83 0 chr12 4221007 4221067 -140061422 + L2 LINE L2 3187 3251 -21 1967 132 3 14 chr12 4221272 4221561 -140060928 - AluSx SINE Alu -26 286 1 2702 75 20 0 chr12 4221817 4222165 -140060324 - THE1A LTR MaLR 0 355 1 306 125 0 0 chr12 4222365 4222413 -140060076 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 243 232 0 0 chr12 4222419 4222475 -140060014 - L2 LINE L2 0 3272 3217 2372 101 0 3 chr12 4222517 4222825 -140059664 + AluSg SINE Alu 1 307 -3 215 288 14 27 chr12 4222923 4222996 -140059493 - L2 LINE L2 0 3313 3242 201 182 0 0 chr12 4223117 4223150 -140059339 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 195 348 58 0 chr12 4224567 4224636 -140057853 + L2 LINE L2 3138 3210 -62 328 264 0 36 chr12 4225467 4225577 -140056912 + MIR3 SINE MIR 82 187 -21 * 349 208 52 42 chr12 4225574 4225670 -140056819 + L2 LINE L2 3176 3272 0 208 238 75 12 chr12 4225713 4225793 -140056696 + MIR SINE MIR 36 120 -88 * 354 186 35 23 chr12 4225788 4225874 -140056615 - MIR SINE MIR -87 121 35 691 272 41 0 chr12 4226540 4226735 -140055754 + MIR SINE MIR 53 255 -7 207 244 0 0 chr12 4226904 4226949 -140055540 - MIR3 SINE MIR -50 158 114 544 222 20 118 chr12 4227028 4227154 -140055335 + MIR SINE MIR 63 200 -62 234 0 0 0 chr12 4227154 4227180 -140055309 + (TA)n Simple_repeat Simple_repeat 2 27 0 204 40 0 0 chr12 4227185 4227210 -140055279 + (CA)n Simple_repeat Simple_repeat 2 26 0 544 222 20 118 chr12 4227210 4227226 -140055263 + MIR SINE MIR 204 220 -42 1632 177 52 4 chr12 4227226 4227497 -140054992 + AluJo SINE Alu 1 284 -28 544 222 20 118 chr12 4227497 4227567 -140054922 + MIR SINE MIR 220 262 0 181 288 136 8 chr12 4228504 4228629 -140053860 + L2 LINE L2 3168 3308 -5 492 280 71 6 chr12 4228789 4228957 -140053532 + MLT1J2 LTR MaLR 34 212 -238 414 285 103 12 chr12 4229162 4229327 -140053162 - MIR3 SINE MIR -1 207 28 766 241 27 5 chr12 4230171 4230358 -140052131 - MIR SINE MIR -53 209 19 2261 61 37 31 chr12 4230468 4230762 -140051727 + AluY SINE Alu 1 296 -15 2183 110 3 3 chr12 4232723 4233015 -140049474 + AluSc SINE Alu 6 297 -12 2565 60 0 0 chr12 4233187 4233488 -140049001 - AluSc SINE Alu -8 301 1 1787 209 16 16 chr12 4234355 4234729 -140047760 + MLT1A2 LTR MaLR 1 374 0 377 236 9 28 chr12 4234902 4235008 -140047481 + L1MC5 LINE L1 7814 7917 -44 2161 99 41 0 chr12 4235175 4235467 -140047022 - AluSc SINE Alu -5 304 1 612 323 66 30 chr12 4235737 4236200 -140046289 - L2 LINE L2 -91 3222 2745 21 0 0 0 chr12 4236375 4236396 -140046093 + AT_rich Low_complexity Low_complexity 1 21 0 893 128 0 0 chr12 4236573 4236698 -140045791 + AluSg/x SINE Alu 176 300 -12 652 233 121 9 chr12 4237956 4238036 -140044453 + MER58 DNA MER1_type 1 71 -2349 2364 88 0 0 chr12 4238036 4238333 -140044156 + AluSg1 SINE Alu 1 297 -12 652 233 121 9 chr12 4238333 4238556 -140043933 + MER58 DNA MER1_type 71 2420 0 536 320 10 0 chr12 4238784 4238984 -140043505 + MIR SINE MIR 40 241 -21 291 278 53 30 chr12 4239894 4240027 -140042462 + MIR3 SINE MIR 62 197 -11 2233 103 3 7 chr12 4241221 4241523 -140040966 + AluSg SINE Alu 1 301 -9 2238 97 0 3 chr12 4241774 4242064 -140040425 - AluSq SINE Alu -15 298 10 397 213 25 0 chr12 4242095 4242175 -140040314 + L2 LINE L2 3232 3313 0 430 313 119 17 chr12 4242301 4242537 -140039952 - LTR16A LTR ERVL 0 457 196 2708 40 0 0 chr12 4242855 4243158 -140039331 - AluY SINE Alu -8 303 1 2259 110 0 10 chr12 4243164 4243474 -140039015 - AluSc SINE Alu -2 307 1 260 281 45 56 chr12 4243505 4243594 -140038895 - MLT1K LTR MaLR -411 177 90 207 204 0 0 chr12 4244273 4244317 -140038172 + GA-rich Low_complexity Low_complexity 2 45 0 2350 56 0 28 chr12 4244567 4244900 -140037589 + AluY SINE Alu 1 325 0 202 219 0 0 chr12 4244960 4245001 -140037488 - MIR3 SINE MIR -49 159 119 3875 235 57 67 chr12 4245001 4246103 -140036386 + L1MEc LINE L1 18 1130 -5266 2140 125 3 0 chr12 4246103 4246400 -140036089 + AluSq SINE Alu 4 301 -12 3875 235 57 67 chr12 4246400 4246694 -140035795 + L1MEc LINE L1 1130 1425 -4971 2367 96 0 3 chr12 4246694 4246996 -140035493 + AluY SINE Alu 1 301 -10 3875 235 57 67 chr12 4246996 4247021 -140035468 + L1MEc LINE L1 1425 1449 -4947 1703 182 21 3 chr12 4247021 4247307 -140035182 + AluJo SINE Alu 1 291 -21 3875 235 57 67 chr12 4247307 4247387 -140035102 + L1MEc LINE L1 1449 1506 -4890 709 89 0 0 chr12 4247523 4247613 -140034876 - AluY SINE Alu -220 91 2 279 222 14 14 chr12 4247614 4247686 -140034803 + L1MEc LINE L1 1510 1581 -4634 2040 144 0 10 chr12 4247686 4247999 -140034490 - AluSx SINE Alu -2 310 1 905 105 48 0 chr12 4248005 4248129 -140034360 + AluSg/x SINE Alu 162 291 -19 1819 245 103 40 chr12 4248130 4248665 -140033824 + L1MEc LINE L1 1651 2151 -4064 2056 125 3 3 chr12 4248665 4248960 -140033529 + AluSc SINE Alu 1 295 -14 1819 245 103 40 chr12 4248960 4249590 -140032899 + L1MEc LINE L1 2151 2889 -3326 637 206 103 122 chr12 4249569 4249889 -140032600 + L1M4 LINE L1 4871 5184 -1031 * 32 43 0 0 chr12 4250198 4250244 -140032245 + AT_rich Low_complexity Low_complexity 1 46 0 1587 108 0 0 chr12 4250264 4250487 -140032002 + L1MA4 LINE L1 5676 5898 -402 240 307 148 34 chr12 4250530 4250618 -140031871 + L2 LINE L2 3161 3258 -14 198 71 0 0 chr12 4250619 4250647 -140031842 + (GA)n Simple_repeat Simple_repeat 2 29 0 246 264 99 25 chr12 4251766 4251887 -140030602 - L3b LINE CR1 -161 1422 1293 545 217 159 13 chr12 4251991 4252148 -140030341 + MER5A DNA MER1_type 10 189 0 196 29 29 29 chr12 4253779 4253813 -140028676 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 209 290 14 14 chr12 4254179 4254248 -140028241 - MIR3 SINE MIR -129 79 11 351 228 205 16 chr12 4304939 4305066 -139977423 + MIR SINE MIR 56 206 -56 3465 64 0 7 chr12 4305081 4305532 -139976957 + LTR7 LTR ERV1 1 448 -2 20843 87 25 16 chr12 4305534 4308504 -139973985 + HERVH LTR ERV1 1 2995 -4718 923 129 27 0 chr12 4308483 4308630 -139973859 + HERVH LTR ERV1 3140 3290 -4423 * 980 141 0 0 chr12 4308632 4308774 -139973715 + HERVH LTR ERV1 3503 3644 -4069 * 2631 163 0 0 chr12 4308773 4309183 -139973306 + HERVH LTR ERV1 4740 5149 -2564 1360 125 18 36 chr12 4309184 4309408 -139973081 + HERVH LTR ERV1 5600 5819 -1894 * 2596 76 45 13 chr12 4309406 4309786 -139972703 + HERVH LTR ERV1 7322 7713 0 3481 56 5 7 chr12 4309786 4310235 -139972254 + LTR7 LTR ERV1 1 448 -2 2085 102 3 0 chr12 4310280 4310600 -139971889 + AluSp SINE Alu 1 321 0 249 318 61 38 chr12 4310608 4310740 -139971749 + L2 LINE L2 3172 3306 -7 2160 99 3 0 chr12 4310959 4311261 -139971228 + AluSp SINE Alu 1 303 -10 182 314 0 0 chr12 4312703 4312754 -139969735 + MIR SINE MIR 211 261 -1 * 232 277 37 94 chr12 4312745 4312905 -139969584 - MIR SINE MIR -68 140 1 264 286 71 54 chr12 4313209 4313321 -139969168 + L2 LINE L2 3191 3304 -9 * 363 236 47 38 chr12 4313298 4313404 -139969085 - L2 LINE L2 -8 3264 3158 453 298 146 20 chr12 4314696 4315052 -139967437 + L2 LINE L2 2543 2943 -371 431 341 32 0 chr12 4315157 4315283 -139967206 + L2 LINE L2 3141 3270 -2 219 36 0 0 chr12 4315574 4315602 -139966887 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2056 87 7 0 chr12 4315602 4315877 -139966612 - AluSp SINE Alu -32 281 5 2004 98 7 23 chr12 4315965 4316272 -139966217 + AluJb SINE Alu 1 302 -10 208 286 0 16 chr12 4316274 4316337 -139966152 + (TA)n Simple_repeat Simple_repeat 2 63 0 232 229 0 0 chr12 4316518 4316566 -139965923 + L2 LINE L2 3265 3312 -1 322 283 9 44 chr12 4316715 4316828 -139965661 + MIR SINE MIR 56 164 -98 395 278 149 76 chr12 4316850 4317138 -139965351 - L2 LINE L2 -73 3199 2891 221 344 0 0 chr12 4317210 4317274 -139965215 - L2 LINE L2 -581 2733 2670 226 278 81 98 chr12 4317323 4317496 -139964993 - MIR3 SINE MIR -16 192 23 35 0 0 0 chr12 4317793 4317828 -139964661 + GC_rich Low_complexity Low_complexity 1 35 0 28 29 0 0 chr12 4317846 4317881 -139964608 + GC_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr12 4317948 4317977 -139964512 + GC_rich Low_complexity Low_complexity 1 29 0 208 258 32 32 chr12 4318474 4318536 -139963953 + MIR3 SINE MIR 101 162 -46 * 452 210 84 56 chr12 4318527 4318670 -139963819 + MIR3 SINE MIR 16 162 -46 2361 84 0 3 chr12 4319078 4319387 -139963102 + AluSq SINE Alu 1 308 -5 483 216 45 52 chr12 4319585 4319719 -139962770 + MIR3 SINE MIR 66 198 -10 468 232 146 43 chr12 4320736 4320969 -139961520 - MER112 DNA MER1_type -3 257 1 464 340 54 17 chr12 4321448 4321689 -139960800 - L3b LINE CR1 -90 1493 1244 242 346 94 24 chr12 4322187 4322314 -139960175 - MIR3 SINE MIR -67 141 6 2108 68 32 36 chr12 4322660 4322969 -139959520 - AluY SINE Alu -3 308 1 1063 275 63 25 chr12 4323328 4323692 -139958797 - L3 LINE CR1 -4 1573 1196 353 320 116 6 chr12 4323770 4323951 -139958538 - MIR SINE MIR -16 246 46 2472 38 0 0 chr12 4325608 4325900 -139956589 + AluY SINE Alu 13 304 -7 193 298 174 37 chr12 4326002 4326163 -139956326 + L3b LINE CR1 1290 1472 -111 1689 170 0 3 chr12 4326231 4326514 -139955975 + AluJb SINE Alu 1 282 -30 475 282 192 13 chr12 4327055 4327211 -139955278 + MIR3 SINE MIR 8 191 -17 246 321 24 12 chr12 4328518 4328602 -139953887 - MIR3 SINE MIR -9 199 115 242 258 62 52 chr12 4328677 4328774 -139953715 + MIR SINE MIR 21 118 -144 1882 148 6 3 chr12 4329124 4329435 -139953054 + AluJo SINE Alu 1 312 0 924 276 65 50 chr12 4329520 4329922 -139952567 - L2 LINE L2 0 3313 2906 300 292 75 33 chr12 4330349 4330469 -139952020 + L2 LINE L2 3177 3301 -12 195 254 111 0 chr12 4330707 4330770 -139951719 + MIR SINE MIR 66 135 -127 299 337 21 0 chr12 4332368 4332463 -139950026 - MIR3 SINE MIR -17 191 95 214 274 0 0 chr12 4333589 4333651 -139948838 + T-rich Low_complexity Low_complexity 1 62 0 447 254 105 72 chr12 4334390 4334483 -139948006 + MIR SINE MIR 34 122 -140 2056 115 0 0 chr12 4334483 4334771 -139947718 - AluY SINE Alu -18 293 6 447 254 105 72 chr12 4334771 4334886 -139947603 + MIR SINE MIR 122 249 -13 400 242 66 0 chr12 4334903 4335024 -139947465 + MIR SINE MIR 28 167 -61 286 288 85 65 chr12 4335109 4335262 -139947227 + MIR3 SINE MIR 48 203 -5 680 255 85 49 chr12 4335570 4335817 -139946672 + MIR SINE MIR 7 262 0 281 273 13 13 chr12 4335968 4336045 -139946444 + MER5B DNA MER1_type 93 169 -9 361 324 14 42 chr12 4336127 4336269 -139946220 + MIR3 SINE MIR 65 202 -6 628 274 13 57 chr12 4336566 4336837 -139945652 - MIR SINE MIR 0 262 3 1175 104 245 60 chr12 4337117 4337386 -139945103 + MER33 DNA MER1_type 1 319 -5 774 207 123 6 chr12 4337391 4337570 -139944919 + MIR SINE MIR 32 231 -31 195 262 65 125 chr12 4337755 4337923 -139944566 + L2 LINE L2 3102 3259 -13 205 328 151 25 chr12 4339115 4339353 -139943136 - L3b LINE CR1 -86 1497 1230 517 270 162 7 chr12 4341119 4341267 -139941222 + MER5B DNA MER1_type 6 176 -2 252 0 0 0 chr12 4344041 4344069 -139938420 + (TCTG)n Simple_repeat Simple_repeat 4 31 0 2750 152 97 9 chr12 4344292 4344819 -139937670 - L1MD3 LINE L1 -11 7984 7412 525 205 1 19 chr12 4344819 4344930 -139937559 - MLT1F1 LTR MaLR -442 125 25 257 178 0 82 chr12 4344931 4345004 -139937485 - L1MD3 LINE L1 -895 7100 7034 1071 185 0 5 chr12 4345007 4345191 -139937298 - MLT1C LTR MaLR -1 466 284 * 1278 201 73 34 chr12 4345186 4345514 -139936975 - MLT1C LTR MaLR -120 347 7 3251 200 58 59 chr12 4345524 4345659 -139936830 - L1MD3 LINE L1 -18 6148 6869 198 0 0 0 chr12 4345659 4345681 -139936808 + (TC)n Simple_repeat Simple_repeat 1 22 0 3251 200 58 59 chr12 4345681 4346522 -139935967 - L1MD3 LINE L1 704 6870 6030 294 310 275 0 chr12 4347054 4347312 -139935177 + L2 LINE L2 2966 3294 -19 226 192 19 0 chr12 4347649 4347701 -139934788 + HAL1 LINE L1 2269 2321 -186 40 37 0 0 chr12 4347884 4347938 -139934551 + AT_rich Low_complexity Low_complexity 1 54 0 306 250 64 21 chr12 4347976 4348116 -139934373 - L1MC5 LINE L1 -99 7862 7717 315 273 0 0 chr12 4348267 4348344 -139934145 - L1MC4 LINE L1 -610 7432 7356 1224 150 134 8 chr12 4348486 4348732 -139933757 - Tigger3(Golem) DNA MER2_type 0 3029 2753 866 137 34 2 chr12 4348736 4348941 -139933548 + AluSx SINE Alu 49 302 -10 304 276 48 0 chr12 4349010 4349115 -139933374 - L1MC5 LINE L1 -895 7066 6957 3325 199 67 27 chr12 4349164 4349970 -139932519 - L1ME2 LINE L1 -9 6155 5318 * 9631 162 45 18 chr12 4349965 4352656 -139929833 - L1MC1 LINE L1 -1 6612 3995 1796 171 0 3 chr12 4352656 4352942 -139929547 - AluJb SINE Alu -27 285 1 9631 162 45 18 chr12 4352942 4356526 -139925963 - L1MC1 LINE L1 -2618 3995 5 411 213 130 0 chr12 4356506 4356614 -139925875 - L1ME2 LINE L1 -810 5336 5215 * 231 146 0 134 chr12 4356613 4356695 -139925794 - L1MC5 LINE L1 -1008 6953 6883 * 256 274 65 114 chr12 4356908 4356949 -139925540 + MARNA DNA Mariner 26 67 -519 2269 91 0 13 chr12 4356949 4357257 -139925232 - AluY SINE Alu -7 304 1 256 274 65 114 chr12 4357257 4357416 -139925073 + MARNA DNA Mariner 67 216 -370 464 298 59 43 chr12 4357438 4357693 -139924796 - MIR SINE MIR -2 260 2 249 304 51 0 chr12 4357793 4357872 -139924617 - MARNA DNA Mariner -416 170 88 2212 203 53 69 chr12 4358161 4358486 -139924003 - L1MD2 LINE L1 0 6753 6441 1892 144 7 17 chr12 4358486 4358651 -139923838 - AluJo SINE Alu -13 299 137 1957 140 10 0 chr12 4358651 4358943 -139923546 - AluSx SINE Alu -17 295 1 1892 144 7 17 chr12 4358943 4359075 -139923414 - AluJo SINE Alu -175 137 5 2212 203 53 69 chr12 4359075 4359375 -139923114 - L1MD2 LINE L1 -312 6441 6138 1486 164 19 22 chr12 4359435 4359704 -139922785 - L1MD2 LINE L1 -502 6134 5867 2057 102 19 56 chr12 4359707 4360030 -139922459 - AluY SINE Alu 0 311 1 312 194 26 17 chr12 4360045 4360131 -139922358 - L1MD2 LINE L1 0 7769 7685 1461 184 40 114 chr12 4360131 4360301 -139922188 + MLT1A2 LTR MaLR 1 182 -192 285 29 0 0 chr12 4360301 4360335 -139922154 + (TC)n Simple_repeat Simple_repeat 1 34 0 1461 184 40 114 chr12 4360335 4360379 -139922110 + MLT1A2 LTR MaLR 182 228 -146 366 23 0 0 chr12 4360379 4360422 -139922067 + (TC)n Simple_repeat Simple_repeat 1 43 0 1461 184 40 114 chr12 4360422 4360608 -139921881 + MLT1A2 LTR MaLR 228 372 -2 312 194 26 17 chr12 4360608 4361235 -139921254 - L1MD2 LINE L1 -84 7685 6243 * 6910 220 53 21 chr12 4361233 4362975 -139919514 - L1MD2 LINE L1 -743 5797 4114 8630 129 10 6 chr12 4362975 4363516 -139918973 + L1PA10 LINE L1 4102 4639 -1529 1948 131 13 35 chr12 4363516 4363807 -139918682 + AluSx SINE Alu 1 286 -26 333 0 0 0 chr12 4363807 4363844 -139918645 + (CA)n Simple_repeat Simple_repeat 2 38 0 1948 131 13 35 chr12 4363844 4363864 -139918625 + AluSx SINE Alu 286 305 -7 8630 129 10 6 chr12 4363864 4365387 -139917102 + L1PA10 LINE L1 4639 6164 -4 6910 220 53 21 chr12 4365387 4365766 -139916723 - L1MD2 LINE L1 -2426 4114 3683 2413 192 19 24 chr12 4365767 4366231 -139916258 - L1MD2 LINE L1 -6061 479 18 706 288 62 64 chr12 4367543 4367998 -139914491 - MLT1J LTR MaLR -57 454 1 308 219 133 60 chr12 4368481 4368632 -139913857 - MIR SINE MIR -62 146 11 1208 190 4 4 chr12 4368662 4368888 -139913601 - AluJb SINE Alu -6 306 81 1772 151 10 7 chr12 4368889 4369180 -139913309 - AluJo SINE Alu -20 292 1 331 270 138 46 chr12 4369202 4369354 -139913135 - MIR SINE MIR -49 213 48 325 301 136 11 chr12 4370651 4370827 -139911662 - MIR SINE MIR -27 235 38 204 261 0 0 chr12 4371895 4371941 -139910548 - L3 LINE CR1 -9 1568 1523 276 297 55 16 chr12 4372119 4372247 -139910242 - MIR SINE MIR -98 164 32 33 0 0 0 chr12 4373612 4373645 -139908844 + AT_rich Low_complexity Low_complexity 1 33 0 731 117 0 0 chr12 4373734 4373837 -139908652 + AluY SINE Alu 205 307 -4 2152 167 30 3 chr12 4373942 4374308 -139908181 + L1MB5 LINE L1 5799 6174 0 275 75 57 75 chr12 4374325 4374378 -139908111 + L1MC1 LINE L1 6281 6332 -1 291 301 135 12 chr12 4374571 4374675 -139907814 + L2 LINE L2 3071 3161 -111 2373 104 3 0 chr12 4374675 4374983 -139907506 - AluSp SINE Alu -4 309 1 291 301 135 12 chr12 4374983 4375041 -139907448 + L2 LINE L2 3161 3253 -19 265 187 13 80 chr12 4375051 4375126 -139907363 + MIR SINE MIR 56 125 -83 286 261 152 0 chr12 4375520 4375658 -139906831 - MIR SINE MIR -62 200 42 248 331 76 21 chr12 4375675 4375820 -139906669 + L3b LINE CR1 1406 1558 -25 391 264 270 6 chr12 4376424 4376587 -139905902 - MIR SINE MIR -42 220 15 1132 236 105 57 chr12 4376685 4377369 -139905120 - L1MC5 LINE L1 -36 7925 7260 363 293 30 0 chr12 4378054 4378153 -139904336 - MIR3 SINE MIR -25 183 82 1038 154 0 0 chr12 4378155 4378317 -139904172 + FRAM SINE Alu 2 163 -13 223 302 35 78 chr12 4378809 4378925 -139903564 + L2 LINE L2 3203 3313 0 428 247 69 70 chr12 4379065 4379314 -139903175 - Charlie2a DNA MER1_type -32 2830 2582 1861 176 3 3 chr12 4379314 4379621 -139902868 - AluJb SINE Alu -5 307 1 428 247 69 70 chr12 4379621 4379870 -139902619 - Charlie2a DNA MER1_type -280 2582 2274 7443 220 56 69 chr12 4379877 4381778 -139900711 + L1MD1 LINE L1 2713 4638 -1591 1281 190 138 30 chr12 4381778 4382047 -139900442 + AluJo SINE Alu 5 302 0 7443 220 56 69 chr12 4382047 4382058 -139900431 + L1MD1 LINE L1 4638 4648 -1581 2549 65 0 0 chr12 4382058 4382365 -139900124 + AluY SINE Alu 1 307 -4 7443 220 56 69 chr12 4382365 4382722 -139899767 + L1MD1 LINE L1 4648 5008 -1221 381 43 0 0 chr12 4382722 4382769 -139899720 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 2228 89 3 0 chr12 4382769 4383051 -139899438 - AluSp SINE Alu -30 283 1 7443 220 56 69 chr12 4383051 4383230 -139899259 + L1MD1 LINE L1 5007 5187 -1042 2223 116 0 3 chr12 4383230 4383540 -139898949 + AluSc SINE Alu 1 309 0 7443 220 56 69 chr12 4383540 4383908 -139898581 + L1MD1 LINE L1 5187 5486 -743 5047 196 25 63 chr12 4386327 4387563 -139894926 + L1MC2 LINE L1 4084 5365 -979 2078 80 29 0 chr12 4387563 4387861 -139894628 + AluY SINE Alu 1 306 0 5047 196 25 63 chr12 4387861 4388120 -139894369 + L1MC2 LINE L1 5365 5632 -712 825 142 0 8 chr12 4388120 4388254 -139894235 - L1PB2 LINE L1 -4 6147 6015 5047 196 25 63 chr12 4388254 4389102 -139893387 + L1MC2 LINE L1 5632 6343 -1 2187 86 0 4 chr12 4389127 4389405 -139893084 - AluSg SINE Alu -20 290 14 2764 225 60 3 chr12 4389426 4390097 -139892392 + L1MC3 LINE L1 7075 7783 -2 3255 172 17 32 chr12 4390106 4390739 -139891750 + L1MD1 LINE L1 5475 6098 -144 253 204 0 0 chr12 4390739 4390788 -139891701 + AluJ/monomer SINE Alu 257 305 -3 1945 73 4 4 chr12 4390802 4391050 -139891439 - AluSp SINE Alu -17 296 49 2930 199 56 38 chr12 4391052 4391076 -139891413 - Charlie2a DNA MER1_type -610 2252 2230 2241 75 0 0 chr12 4391076 4391382 -139891107 - AluY SINE Alu 0 306 1 2930 199 56 38 chr12 4391382 4392086 -139890403 - Charlie2a DNA MER1_type -632 2230 1506 2279 118 0 0 chr12 4392086 4392390 -139890099 - AluSc SINE Alu -5 304 1 2930 199 56 38 chr12 4392390 4392427 -139890062 - Charlie2a DNA MER1_type -1356 1506 1471 410 53 18 0 chr12 4392483 4392540 -139889949 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 1583 268 116 38 chr12 4392561 4393173 -139889316 - Charlie2b DNA MER1_type -2117 665 6 183 80 0 0 chr12 4394453 4394478 -139888011 + (A)n Simple_repeat Simple_repeat 1 25 0 2047 135 0 3 chr12 4394483 4394780 -139887709 + AluJo SINE Alu 3 298 -14 429 311 62 6 chr12 4395338 4395499 -139886990 - MIR SINE MIR -1 261 92 298 299 146 14 chr12 4395531 4395675 -139886814 + L3 LINE CR1 1395 1557 -20 191 245 0 20 chr12 4395695 4395744 -139886745 - L2 LINE L2 -3 3269 3222 209 256 0 13 chr12 4395764 4395842 -139886647 + GA-rich Low_complexity Low_complexity 3 79 0 27 29 0 0 chr12 4395857 4395891 -139886598 + AT_rich Low_complexity Low_complexity 1 34 0 726 179 0 83 chr12 4396049 4396194 -139886295 - FLAM_C SINE Alu 0 133 1 258 278 179 46 chr12 4396783 4396883 -139885606 - L2 LINE L2 -231 3041 2956 1841 140 3 42 chr12 4396883 4397190 -139885299 + AluJo SINE Alu 2 296 -16 258 278 179 46 chr12 4397190 4397438 -139885051 - L2 LINE L2 -316 2956 2636 1749 160 91 3 chr12 4398467 4398798 -139883691 + MER46B DNA MER2_type 1 235 -1 183 200 0 0 chr12 4398843 4398873 -139883616 - L2 LINE L2 -86 3186 3157 603 247 89 32 chr12 4399026 4399273 -139883216 + L2 LINE L2 3050 3310 -3 332 310 70 10 chr12 4399295 4399395 -139883094 + L2 LINE L2 3116 3221 -51 309 51 0 0 chr12 4399418 4399457 -139883032 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 235 274 0 0 chr12 4399487 4399538 -139882951 - L2 LINE L2 -12 3260 3210 273 289 20 94 chr12 4400103 4400252 -139882237 - MIR3 SINE MIR -3 205 68 421 234 52 16 chr12 4400474 4400619 -139881870 + L1ME3 LINE L1 5987 6132 -38 1225 35 0 0 chr12 4400709 4400850 -139881639 + AluY SINE Alu 165 305 -6 2552 62 0 3 chr12 4400868 4401174 -139881315 + AluSc SINE Alu 1 305 -4 276 133 44 0 chr12 4401178 4401223 -139881266 - MIR SINE MIR -96 166 120 213 232 74 42 chr12 4401238 4401333 -139881156 - MIR SINE MIR -4 258 161 861 106 50 7 chr12 4401370 4401511 -139880978 - L1MB3 LINE L1 -3 6180 6034 368 299 0 0 chr12 4401513 4401610 -139880879 + MIR SINE MIR 49 145 -117 3301 138 2 8 chr12 4401638 4402118 -139880371 + MER1A DNA MER1_type 53 529 0 381 375 40 0 chr12 4402815 4402991 -139879498 + MIR SINE MIR 49 231 -31 270 273 39 26 chr12 4404087 4404164 -139878325 - MIR SINE MIR -98 164 87 189 0 0 0 chr12 4404848 4404869 -139877620 + (TG)n Simple_repeat Simple_repeat 1 21 0 249 119 0 0 chr12 4405067 4405109 -139877380 + (TC)n Simple_repeat Simple_repeat 1 42 0 225 128 0 0 chr12 4405108 4405155 -139877334 + (CA)n Simple_repeat Simple_repeat 1 47 0 * 218 290 70 50 chr12 4405428 4405528 -139876961 + MIR SINE MIR 129 230 -32 279 193 35 0 chr12 4405539 4405596 -139876893 - L3 LINE CR1 -119 1458 1400 287 167 0 0 chr12 4406150 4406198 -139876291 - MIR SINE MIR -108 154 107 656 289 128 5 chr12 4407454 4407672 -139874817 - MIR SINE MIR -1 261 17 209 222 0 19 chr12 4407764 4407818 -139874671 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 502 295 47 37 chr12 4408544 4408734 -139873755 + MIR SINE MIR 51 242 -20 2335 79 0 0 chr12 4408868 4409172 -139873317 - AluSq SINE Alu -5 308 5 2355 51 3 26 chr12 4409184 4409495 -139872994 - AluY SINE Alu -7 304 1 198 0 0 0 chr12 4409661 4409683 -139872806 + (CA)n Simple_repeat Simple_repeat 1 22 0 394 275 84 28 chr12 4410518 4410660 -139871829 - MIR SINE MIR -93 169 20 2337 48 10 0 chr12 4410825 4411117 -139871372 - AluSg SINE Alu -15 295 1 2152 115 0 0 chr12 4411541 4411853 -139870636 + AluSq SINE Alu 1 312 -1 2899 207 12 14 chr12 4411869 4412581 -139869908 - L1M LINE L1 -737 5429 4720 3939 292 66 52 chr12 4412585 4412877 -139869612 - L1ME3A LINE L1 -232 6174 5888 2450 47 0 3 chr12 4412877 4413174 -139869315 + AluY SINE Alu 1 296 -15 3939 292 66 52 chr12 4413174 4414518 -139867971 - L1ME3A LINE L1 -518 5888 4564 1773 179 0 0 chr12 4414518 4414814 -139867675 - AluJo SINE Alu -16 296 1 3939 292 66 52 chr12 4414814 4415035 -139867454 - L1ME3A LINE L1 -1842 4564 4348 234 62 0 0 chr12 4415035 4415067 -139867422 + (TG)n Simple_repeat Simple_repeat 1 32 0 3939 292 66 52 chr12 4415067 4415585 -139866904 - L1ME3A LINE L1 -2058 4348 3839 2117 103 3 0 chr12 4415585 4415901 -139866588 - AluSp SINE Alu 0 313 1 3939 292 66 52 chr12 4415901 4416117 -139866372 - L1ME3A LINE L1 -2567 3839 3627 1934 205 55 26 chr12 4416117 4416480 -139866009 - MLT1C LTR MaLR 0 467 116 233 0 62 0 chr12 4416480 4416512 -139865977 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1989 111 0 11 chr12 4416515 4416795 -139865694 - AluSx SINE Alu -31 281 5 1934 205 55 26 chr12 4416795 4416881 -139865608 - MLT1C LTR MaLR -352 115 1 3939 292 66 52 chr12 4416881 4417890 -139864599 - L1ME3A LINE L1 -2779 3627 2518 1461 187 33 0 chr12 4417890 4418190 -139864299 - AluJb SINE Alu -2 310 1 3939 292 66 52 chr12 4418190 4418239 -139864250 - L1ME3A LINE L1 -3888 2518 2471 231 205 60 24 chr12 4418323 4418406 -139864083 - L1ME3A LINE L1 -3967 2417 2332 318 285 44 3 chr12 4418739 4418886 -139863603 - L1ME3A LINE L1 -4641 1922 1620 677 199 29 15 chr12 4418898 4419034 -139863455 - LTR40a LTR ERVL -379 140 3 187 313 31 0 chr12 4419111 4419175 -139863314 - MIR SINE MIR -124 138 73 664 230 23 40 chr12 4419785 4419959 -139862530 - MER5A DNA MER1_type -5 184 14 520 320 11 17 chr12 4421872 4422053 -139860436 - MIR3 SINE MIR -10 198 19 2121 75 3 3 chr12 4422068 4422381 -139860108 - AluY SINE Alu 0 313 1 183 80 0 0 chr12 4422662 4422687 -139859802 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 293 68 23 0 chr12 4422931 4422975 -139859514 + (TG)n Simple_repeat Simple_repeat 2 46 0 254 296 71 31 chr12 4423724 4423822 -139858667 - MIR SINE MIR -113 149 48 182 231 0 0 chr12 4423906 4423945 -139858544 - L2 LINE L2 -97 3175 3137 187 307 53 40 chr12 4424037 4424112 -139858377 - MIR SINE MIR -101 161 86 1694 131 78 11 chr12 4424352 4424634 -139857855 + AluJb SINE Alu 1 301 -11 7498 48 0 0 chr12 4424929 4425830 -139856659 - L1PA5 LINE L1 0 6154 5254 236 319 99 7 chr12 4425851 4425992 -139856497 + L3 LINE CR1 1418 1571 -6 250 238 88 62 chr12 4426293 4426373 -139856116 + L2 LINE L2 3214 3295 -18 1376 194 3 31 chr12 4426383 4426672 -139855817 + AluJo SINE Alu 1 281 -31 325 239 37 30 chr12 4426985 4427119 -139855370 + CT-rich Low_complexity Low_complexity 2 136 0 282 277 107 13 chr12 4427780 4427909 -139854580 - L3b LINE CR1 -6 1571 1437 359 235 0 0 chr12 4428148 4428216 -139854273 + MIR SINE MIR 194 261 -1 417 250 45 30 chr12 4428478 4428610 -139853879 + MER94 DNA DNA 1 134 0 1673 169 3 3 chr12 4428688 4428972 -139853517 - AluJb SINE Alu -14 298 15 250 327 37 68 chr12 4429053 4429215 -139853274 + MER5A DNA MER1_type 33 189 0 214 246 77 15 chr12 4429290 4429355 -139853134 - MIR SINE MIR -93 115 47 2134 109 3 3 chr12 4429920 4430232 -139852257 + AluSx SINE Alu 1 312 0 287 194 0 16 chr12 4430530 4430592 -139851897 - MIR SINE MIR -139 123 63 300 294 33 11 chr12 4430778 4430870 -139851619 - MIR3 SINE MIR -4 204 111 1189 238 188 22 chr12 4430898 4431435 -139851054 + Charlie2b DNA MER1_type 44 669 -2113 1198 241 126 18 chr12 4431521 4431741 -139850748 + L2 LINE L2 597 792 -2522 2028 91 24 7 chr12 4431741 4432028 -139850461 - AluSg SINE Alu -18 292 1 1198 241 126 18 chr12 4432028 4432260 -139850229 + L2 LINE L2 792 1098 -2216 420 281 125 0 chr12 4433163 4433323 -139849166 + MIR SINE MIR 49 228 -34 242 182 81 61 chr12 4433466 4433565 -139848924 + MIR SINE MIR 42 142 -66 295 278 160 36 chr12 4433941 4434121 -139848368 + MIR3 SINE MIR 5 196 -62 495 260 77 46 chr12 4434245 4434441 -139848048 - MIR SINE MIR -1 261 60 694 161 161 21 chr12 4434610 4434753 -139847736 - FRAM SINE Alu -12 164 2 245 355 21 0 chr12 4434990 4435083 -139847406 - MIR3 SINE MIR -16 192 98 2273 39 7 7 chr12 4435927 4436260 -139846229 - AluY SINE Alu 0 333 1 6573 84 14 2 chr12 4436267 4436935 -139845554 - L1PA14 LINE L1 0 6161 5478 2221 83 7 10 chr12 4436935 4437237 -139845252 - AluSp SINE Alu -12 301 1 6573 84 14 2 chr12 4437237 4437465 -139845024 - L1PA14 LINE L1 -683 5478 5254 2236 91 0 3 chr12 4437698 4437995 -139844494 + AluSq SINE Alu 1 296 -17 401 241 9 0 chr12 4438005 4438117 -139844372 + CT-rich Low_complexity Low_complexity 3 115 0 187 182 0 0 chr12 4438123 4438156 -139844333 - L2 LINE L2 -13 3300 3268 238 257 27 14 chr12 4438865 4438939 -139843550 + L1ME LINE L1 5845 5919 -202 2120 112 0 0 chr12 4439417 4439720 -139842769 - AluSx SINE Alu -9 303 1 316 214 36 116 chr12 4440429 4440541 -139841948 + MIR SINE MIR 84 186 -76 5201 158 56 27 chr12 4440541 4440593 -139841896 + L1MC2 LINE L1 5293 5342 -1002 954 107 15 0 chr12 4440593 4440724 -139841765 + FLAM_C SINE Alu 1 133 0 5201 158 56 27 chr12 4440724 4441084 -139841405 + L1MC2 LINE L1 5342 5690 -654 1861 123 18 0 chr12 4441084 4441388 -139841101 - AluSx SINE Alu 0 309 1 5201 158 56 27 chr12 4441388 4441995 -139840494 + L1MC2 LINE L1 5690 6343 -1 300 186 14 86 chr12 4442007 4442077 -139840412 + MIR3 SINE MIR 91 155 -53 329 157 0 0 chr12 4442084 4442135 -139840354 - MER3 DNA MER1_type -127 82 32 311 248 44 35 chr12 4442135 4442159 -139840330 - L1MC4 LINE L1 -447 7595 7573 2135 102 0 10 chr12 4442159 4442463 -139840026 - AluSc SINE Alu -8 301 1 311 248 44 35 chr12 4442463 4442551 -139839938 - L1MC4 LINE L1 -469 7573 7482 2324 81 0 0 chr12 4444241 4444538 -139837951 + AluSp SINE Alu 1 297 -16 1906 117 31 3 chr12 4444550 4444841 -139837648 + AluSq SINE Alu 1 299 -14 207 0 0 0 chr12 4444979 4445002 -139837487 + (T)n Simple_repeat Simple_repeat 1 23 0 861 143 75 7 chr12 4445630 4445777 -139836712 - FRAM SINE Alu -19 157 1 988 196 103 18 chr12 4445777 4446006 -139836483 + L1ME3A LINE L1 5863 6122 -48 2203 107 0 3 chr12 4446006 4446316 -139836173 + AluSc SINE Alu 1 309 0 988 196 103 18 chr12 4446316 4446367 -139836122 + L1ME3A LINE L1 6122 6167 -3 729 136 8 8 chr12 4446373 4446491 -139835998 + FLAM_C SINE Alu 17 134 -9 1203 224 98 67 chr12 4446723 4447173 -139835316 + MLT1C LTR MaLR 1 464 -3 2128 102 3 0 chr12 4447705 4448039 -139834450 - AluSx SINE Alu 0 335 1 1035 221 78 11 chr12 4448501 4448782 -139833707 + Charlie2b DNA MER1_type 370 669 -2113 2340 178 174 47 chr12 4448816 4449129 -139833360 + Charlie2a DNA MER1_type 1472 1744 -1118 2197 89 3 0 chr12 4449129 4449421 -139833068 - AluSg SINE Alu -17 293 1 2340 178 174 47 chr12 4449421 4449725 -139832764 + Charlie2a DNA MER1_type 1744 2008 -854 2451 47 3 0 chr12 4449725 4450024 -139832465 + AluY SINE Alu 1 300 -11 2340 178 174 47 chr12 4450024 4450234 -139832255 + Charlie2a DNA MER1_type 2008 2190 -672 1502 126 29 8 chr12 4450234 4450473 -139832016 - AluJo SINE Alu -9 303 60 2340 178 174 47 chr12 4450473 4450745 -139831744 + Charlie2a DNA MER1_type 2190 2778 -84 204 40 0 0 chr12 4451076 4451101 -139831388 + (T)n Simple_repeat Simple_repeat 1 25 0 207 270 190 35 chr12 4452656 4452830 -139829659 + L2 LINE L2 2984 3184 -129 2187 125 0 0 chr12 4453075 4453370 -139829119 - AluSx SINE Alu -17 295 1 311 189 42 11 chr12 4453377 4453472 -139829017 + (TA)n Simple_repeat Simple_repeat 1 98 0 190 343 67 0 chr12 4453488 4453593 -139828896 + L2 LINE L2 3136 3247 -25 404 282 0 9 chr12 4453818 4453928 -139828561 - L1M4 LINE L1 -3575 2571 2463 240 294 42 25 chr12 4454598 4454717 -139827772 - L2 LINE L2 -210 3062 2942 705 227 167 32 chr12 4454770 4455021 -139827468 - Charlie8 DNA MER1_type -2132 285 1 1367 330 104 28 chr12 4455128 4455624 -139826865 - L2 LINE L2 -556 2758 2301 2137 139 0 3 chr12 4455624 4455926 -139826563 + AluSx SINE Alu 1 301 -11 1367 330 104 28 chr12 4455926 4456574 -139825915 - L2 LINE L2 -1013 2301 1527 223 241 20 0 chr12 4456881 4456946 -139825543 + MIR SINE MIR 17 81 -133 1862 123 0 7 chr12 4457002 4457271 -139825218 + AluJb SINE Alu 39 305 -7 2334 136 8 0 chr12 4458105 4458453 -139824036 - L1PB4 LINE L1 -13 6143 5790 270 0 0 0 chr12 4458453 4458483 -139824006 + (TG)n Simple_repeat Simple_repeat 2 31 0 2334 136 8 0 chr12 4458483 4458501 -139823988 - L1PB4 LINE L1 -366 5790 5774 43 88 0 0 chr12 4458508 4458621 -139823868 + AT_rich Low_complexity Low_complexity 1 113 0 24 32 0 0 chr12 4458676 4458707 -139823782 + AT_rich Low_complexity Low_complexity 1 31 0 477 88 32 40 chr12 4458788 4458913 -139823576 + (TA)n Simple_repeat Simple_repeat 1 124 0 252 269 14 21 chr12 4458916 4459057 -139823432 + (TTA)n Simple_repeat Simple_repeat 3 142 0 348 133 0 0 chr12 4459088 4459148 -139823341 + (TA)n Simple_repeat Simple_repeat 1 60 0 713 145 17 29 chr12 4459161 4459312 -139823177 - L1PB4 LINE L1 -375 5781 5645 1579 243 207 16 chr12 4459582 4460075 -139822414 - MLT1E LTR MaLR -6 587 1 390 276 92 15 chr12 4460198 4460394 -139822095 - MIR SINE MIR -28 234 24 418 273 0 18 chr12 4460540 4460650 -139821839 - MLT1J LTR MaLR -85 426 319 2228 172 46 0 chr12 4460901 4461314 -139821175 + MSTB1 LTR MaLR 1 432 0 405 260 87 119 chr12 4461364 4461464 -139821025 - HAL1b LINE L1 -461 887 785 2364 88 0 7 chr12 4461464 4461760 -139820729 - AluSp SINE Alu -19 294 1 405 260 87 119 chr12 4461760 4461897 -139820592 - HAL1b LINE L1 -563 785 645 336 192 26 0 chr12 4461897 4461975 -139820514 + MER116 DNA Mariner 1 80 0 405 260 87 119 chr12 4461975 4462382 -139820107 - HAL1b LINE L1 -703 645 263 2155 80 0 0 chr12 4462398 4462688 -139819801 + AluSg1 SINE Alu 18 307 0 349 43 43 29 chr12 4462891 4462961 -139819528 + (TAGA)n Simple_repeat Simple_repeat 1 71 0 390 247 51 51 chr12 4463050 4463228 -139819261 + L1MC4a LINE L1 5741 5918 -1890 1660 147 110 7 chr12 4463386 4463659 -139818830 - AluSx SINE Alu -11 301 1 1794 281 90 68 chr12 4463781 4464274 -139818215 + L1MEc LINE L1 35 516 -5880 2141 117 0 43 chr12 4464274 4464600 -139817889 + AluSx SINE Alu 1 312 0 2360 107 0 0 chr12 4464610 4464918 -139817571 + AluSx SINE Alu 1 308 -4 1794 281 90 68 chr12 4464918 4465818 -139816671 + L1MEc LINE L1 524 1470 -4926 3170 200 116 96 chr12 4465937 4466205 -139816284 + L1MEc LINE L1 2574 2835 -3380 225 125 0 0 chr12 4466205 4466237 -139816252 - Alu SINE Alu -224 78 47 3170 200 116 96 chr12 4466237 4466322 -139816167 + L1MEc LINE L1 2835 2917 -3298 7971 19 0 0 chr12 4466322 4467361 -139815128 - L1PA3 LINE L1 0 6155 5117 3170 200 116 96 chr12 4467361 4467902 -139814587 + L1MEc LINE L1 2917 3446 -2769 2167 102 0 7 chr12 4467902 4468187 -139814302 - AluSg SINE Alu -27 283 1 3170 200 116 96 chr12 4468187 4468219 -139814270 + L1MEc LINE L1 3446 3476 -2739 2326 45 52 3 chr12 4468219 4468508 -139813981 - AluY SINE Alu -8 303 1 3170 200 116 96 chr12 4468508 4468932 -139813557 + L1MEc LINE L1 3476 3986 -2229 337 314 20 65 chr12 4468975 4469220 -139813269 + L1M4 LINE L1 3702 3935 -2211 492 269 138 39 chr12 4469284 4469566 -139812923 - L2 LINE L2 -4 3309 3000 2061 238 41 23 chr12 4469741 4470393 -139812096 + HAL1 LINE L1 1076 1739 -768 767 307 121 18 chr12 4470409 4470862 -139811627 + MLT1J LTR MaLR 11 510 -1 1891 256 69 46 chr12 4470867 4471606 -139810883 + HAL1 LINE L1 1752 2507 0 1313 274 146 35 chr12 4471694 4472078 -139810411 + L1MC4a LINE L1 3797 4137 -1984 683 297 29 0 chr12 4472078 4472287 -139810202 - MER58C DNA MER1_type 0 215 1 1313 274 146 35 chr12 4472287 4473448 -139809041 + L1MC4a LINE L1 4137 5168 -953 2327 93 3 7 chr12 4473448 4473749 -139808740 + AluSq SINE Alu 1 300 -13 1313 274 146 35 chr12 4473749 4473938 -139808551 + L1MC4a LINE L1 5168 5335 -786 1783 171 3 0 chr12 4473938 4474224 -139808265 - AluJb SINE Alu -21 291 5 1313 274 146 35 chr12 4474224 4474404 -139808085 + L1MC4a LINE L1 5335 5951 -170 229 191 58 159 chr12 4474536 4474642 -139807847 - L1ME4a LINE L1 -35 6086 5971 210 43 22 43 chr12 4474642 4474688 -139807801 + (TTA)n Simple_repeat Simple_repeat 2 46 0 229 191 58 159 chr12 4474688 4474770 -139807719 - L1ME4a LINE L1 -150 5971 5928 1756 135 6 79 chr12 4474770 4475088 -139807401 + AluJb SINE Alu 1 295 -17 229 191 58 159 chr12 4475088 4475155 -139807334 - L1ME4a LINE L1 -193 5928 5856 197 280 130 30 chr12 4475564 4475664 -139806825 - L2 LINE L2 -4 3268 3159 533 348 8 37 chr12 4476820 4477064 -139805425 - MIR SINE MIR -6 256 20 2111 196 19 21 chr12 4477088 4477553 -139804936 - MLT1C LTR MaLR -3 464 1 205 176 0 0 chr12 4477572 4477606 -139804883 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 304 306 96 25 chr12 4477817 4477974 -139804515 - MIR SINE MIR -60 202 35 1744 166 32 3 chr12 4478453 4478736 -139803753 - AluJo SINE Alu -19 293 3 421 293 16 69 chr12 4479098 4479226 -139803263 - MER5B DNA MER1_type 0 178 62 1855 162 0 23 chr12 4479226 4479528 -139802961 - AluJo SINE Alu -13 299 5 421 293 16 69 chr12 4479528 4479587 -139802902 - MER5B DNA MER1_type -116 62 1 1752 142 28 34 chr12 4479893 4480216 -139802273 + L1MC2 LINE L1 6024 6344 0 309 324 54 0 chr12 4480849 4480997 -139801492 - MIR SINE MIR -13 249 94 2314 79 10 0 chr12 4481544 4481836 -139800653 + AluSp SINE Alu 6 300 -13 316 300 49 60 chr12 4482075 4482342 -139800147 - L2 LINE L2 -1 3312 3049 544 307 78 13 chr12 4482489 4482520 -139799969 + MIR SINE MIR 4 32 -230 2409 86 0 3 chr12 4482520 4482822 -139799667 + AluSc SINE Alu 1 301 -8 544 307 78 13 chr12 4482822 4483021 -139799468 + MIR SINE MIR 32 249 -13 1258 132 16 5 chr12 4483879 4484069 -139798420 + AluJb SINE Alu 114 305 -7 375 230 52 37 chr12 4484103 4484238 -139798251 - MLT1J LTR MaLR -374 137 1 483 261 14 35 chr12 4484331 4484473 -139798016 + L2 LINE L2 3134 3272 0 329 288 44 12 chr12 4484969 4485129 -139797360 - MIR3 SINE MIR -8 200 36 254 259 40 52 chr12 4485801 4485902 -139796587 - MIR SINE MIR -101 107 8 275 290 103 13 chr12 4488472 4488627 -139793862 + L3b LINE CR1 1284 1452 -131 364 264 61 74 chr12 4489128 4489276 -139793213 - MIR SINE MIR -49 213 68 574 294 135 37 chr12 4489541 4490021 -139792468 + L2 LINE L2 2782 3312 -1 456 253 95 28 chr12 4491197 4491342 -139791147 - MIR SINE MIR -65 143 36 755 325 15 18 chr12 4491528 4491925 -139790564 - L2 LINE L2 0 3313 2918 309 208 202 22 chr12 4492028 4492206 -139790283 + L1ME2 LINE L1 5944 6153 -11 2122 104 4 0 chr12 4492208 4492509 -139789980 - AluSx SINE Alu 0 302 1 207 362 9 29 chr12 4492704 4492809 -139789680 + MIR SINE MIR 80 182 -80 2256 215 47 103 chr12 4493385 4494264 -139788225 + MER97a DNA MER1_type? 59 887 -7 2437 107 0 0 chr12 4494613 4494923 -139787566 + AluSx SINE Alu 1 310 -2 417 101 0 0 chr12 4494953 4495045 -139787444 + Alu SINE Alu 243 334 0 271 250 16 0 chr12 4496273 4496337 -139786152 - MIR SINE MIR -112 150 86 240 293 0 13 chr12 4496551 4496626 -139785863 - MIR SINE MIR -104 158 85 482 305 122 15 chr12 4496935 4497249 -139785240 - L1MC/D LINE L1 -333 5788 5443 2212 101 0 7 chr12 4497262 4497559 -139784930 + AluSx SINE Alu 6 300 -12 2260 119 0 0 chr12 4497576 4497878 -139784611 + AluSx SINE Alu 1 302 -10 2314 97 3 0 chr12 4498833 4499131 -139783358 - AluSx SINE Alu -13 299 1 879 232 0 0 chr12 4499708 4499872 -139782617 - FRAM SINE Alu -2 164 1 8818 194 48 12 chr12 4500417 4502488 -139780001 + L1M2 LINE L1 157 2319 -4530 330 203 0 0 chr12 4502835 4502894 -139779595 + MER2 DNA MER2_type 287 345 0 404 300 36 7 chr12 4502902 4503042 -139779447 + MIR3 SINE MIR 54 197 -11 6930 52 36 0 chr12 4505851 4506941 -139775548 - L1P2 LINE L1 -642 5512 4381 337 295 93 16 chr12 4507442 4507571 -139774918 - L2 LINE L2 0 3272 3134 375 230 52 37 chr12 4507663 4507798 -139774691 + MLT1J LTR MaLR 1 137 -374 1247 132 16 5 chr12 4507832 4508022 -139774467 - AluJb SINE Alu -7 305 114 183 162 0 0 chr12 4508803 4508840 -139773649 + (TTA)n Simple_repeat Simple_repeat 1 37 0 266 184 0 174 chr12 4511337 4511446 -139771043 - MIR SINE MIR -117 145 56 637 238 97 36 chr12 4511852 4512100 -139770389 + AluJo SINE Alu 3 265 -47 8212 97 32 2 chr12 4512383 4513646 -139768843 - L1P LINE L1 -3385 2761 1460 436 318 71 38 chr12 4513785 4514052 -139768437 - L2 LINE L2 -805 2509 2234 1410 273 66 29 chr12 4514060 4514610 -139767879 + MLT1L LTR MaLR 1 570 -18 264 122 0 0 chr12 4516853 4516894 -139765595 + (CA)n Simple_repeat Simple_repeat 2 42 0 2187 98 3 10 chr12 4517071 4517376 -139765113 - AluSc SINE Alu -6 303 1 574 120 11 0 chr12 4517377 4517469 -139765020 - L1MC3 LINE L1 -99 7686 7594 203 170 21 0 chr12 4518484 4518531 -139763958 + CT-rich Low_complexity Low_complexity 2 49 0 2456 56 13 0 chr12 4520796 4521099 -139761390 + AluY SINE Alu 1 307 -4 305 241 126 0 chr12 4521118 4521205 -139761284 - LTR10A LTR ERV1 -511 98 1 823 202 255 47 chr12 4521234 4521615 -139760874 - MER31B LTR ERV1 0 466 7 243 0 0 0 chr12 4522494 4522521 -139759968 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 207 125 0 0 chr12 4523920 4523960 -139758529 + (A)n Simple_repeat Simple_repeat 1 40 0 27 29 0 0 chr12 4524064 4524098 -139758391 + AT_rich Low_complexity Low_complexity 1 34 0 207 186 0 0 chr12 4524178 4524221 -139758268 + A-rich Low_complexity Low_complexity 2 44 0 242 188 29 58 chr12 4524899 4524968 -139757521 + L2 LINE L2 3229 3295 -18 21 0 0 0 chr12 4525444 4525465 -139757024 + AT_rich Low_complexity Low_complexity 1 21 0 2029 115 7 14 chr12 4526305 4526600 -139755889 - AluSx SINE Alu -19 293 1 2149 94 10 13 chr12 4527365 4527673 -139754816 + AluSp SINE Alu 6 312 -1 1212 189 50 12 chr12 4528496 4528755 -139753734 - MLT1A1 LTR MaLR -93 272 4 255 278 101 35 chr12 4529037 4529235 -139753254 - L1MEc LINE L1 -4815 1495 1285 505 300 101 51 chr12 4529253 4529300 -139753189 - L1MEc LINE L1 -4917 1202 1159 2235 118 3 0 chr12 4529300 4529606 -139752883 - AluSq SINE Alu -6 307 1 505 300 101 51 chr12 4529606 4529647 -139752842 - L1MEc LINE L1 -4960 1159 1121 1544 199 82 15 chr12 4529647 4529989 -139752500 + MLT1A1 LTR MaLR 1 365 0 505 300 101 51 chr12 4529989 4530486 -139752003 - L1MEc LINE L1 -4998 1121 587 513 32 0 0 chr12 4530716 4530779 -139751710 + (CA)n Simple_repeat Simple_repeat 1 63 0 1936 124 29 0 chr12 4531434 4531728 -139750761 - AluSx SINE Alu 0 303 2 39 38 0 0 chr12 4531860 4531913 -139750576 + AT_rich Low_complexity Low_complexity 1 53 0 2073 116 17 10 chr12 4532122 4532424 -139750065 + AluSx SINE Alu 5 308 -4 678 302 49 40 chr12 4532495 4532823 -139749666 + L1MEc LINE L1 398 728 -5993 12468 170 27 20 chr12 4532832 4532999 -139749490 + L1MA2 LINE L1 2915 3079 -3067 1832 123 11 0 chr12 4532999 4533268 -139749221 + AluSq SINE Alu 35 306 -7 12468 170 27 20 chr12 4533268 4535546 -139746943 + L1MA2 LINE L1 3079 5379 -767 737 62 0 0 chr12 4535548 4535644 -139746845 + L1PA5 LINE L1 1 96 -6050 11179 44 5 0 chr12 4535644 4538989 -139743500 + L1PA5 LINE L1 623 6134 -20 11179 38 6 0 chr12 4538989 4541030 -139741459 + L1PA5 LINE L1 4094 6147 -7 11179 44 5 0 chr12 4541030 4541045 -139741444 + L1PA5 LINE L1 6134 6147 -7 6285 112 19 7 chr12 4541044 4541971 -139740518 + L1MA2 LINE L1 5366 6304 0 * 2022 147 0 0 chr12 4542123 4542415 -139740074 + AluJb SINE Alu 1 292 -20 276 260 61 41 chr12 4542488 4542684 -139739805 + L1MEc LINE L1 1578 1777 -4944 261 278 48 8 chr12 4542734 4542854 -139739635 + L1MEc LINE L1 1844 1950 -4590 366 265 97 17 chr12 4543078 4543369 -139739120 + L1MEc LINE L1 805 1050 -5165 835 236 5 26 chr12 4543371 4543566 -139738923 - MER58A DNA MER1_type -2 222 32 2390 81 0 7 chr12 4543688 4543984 -139738505 - AluSc SINE Alu -13 296 3 529 304 117 16 chr12 4544438 4544755 -139737734 - L1ME LINE L1 -330 5791 5443 2375 95 0 3 chr12 4544768 4545074 -139737415 + AluSx SINE Alu 6 310 -2 2091 75 8 4 chr12 4547824 4548089 -139734400 + AluSg SINE Alu 1 266 -44 2207 112 7 3 chr12 4548995 4549300 -139733189 - AluSx SINE Alu -6 306 1 499 269 139 22 chr12 4549484 4549807 -139732682 - L1ME LINE L1 -1170 4976 4616 442 257 192 66 chr12 4549843 4550494 -139731995 - L2 LINE L2 -1 3312 2579 2030 155 6 26 chr12 4550672 4551021 -139731468 - L1MC1 LINE L1 0 6402 6061 2359 80 0 3 chr12 4552091 4552391 -139730098 + AluY SINE Alu 1 299 -12 1184 97 0 0 chr12 4552408 4552553 -139729936 + AluSq/x SINE Alu 1 145 -167 201 74 0 0 chr12 4552557 4552584 -139729905 + (A)n Simple_repeat Simple_repeat 1 27 0 1073 237 75 95 chr12 4552652 4553305 -139729184 - L1MC4 LINE L1 -1 8041 7402 1365 229 90 43 chr12 4553312 4553802 -139728687 - L1MC4 LINE L1 -779 7263 6751 2041 212 67 55 chr12 4553819 4554369 -139728120 - L1MC1 LINE L1 -351 5882 5340 342 67 0 0 chr12 4554369 4554414 -139728075 + (TG)n Simple_repeat Simple_repeat 2 46 0 2041 212 67 55 chr12 4554414 4555020 -139727469 - L1MC1 LINE L1 -893 5340 4713 * 5359 153 43 89 chr12 4555017 4555312 -139727177 - L1MC3 LINE L1 0 7785 7478 545 155 29 0 chr12 4555312 4555415 -139727074 - L1MB4 LINE L1 0 6180 6075 5359 153 43 89 chr12 4555415 4555430 -139727059 - L1MC3 LINE L1 -307 7478 7464 2472 144 20 0 chr12 4555430 4555827 -139726662 - L1MA5 LINE L1 -10 6290 5886 5359 153 43 89 chr12 4555827 4556006 -139726483 - L1MC3 LINE L1 -321 7464 7278 2352 93 10 6 chr12 4556006 4556318 -139726171 - AluSp SINE Alu 0 313 1 5359 153 43 89 chr12 4556318 4557097 -139725392 - L1MC3 LINE L1 -507 7278 6573 877 106 28 28 chr12 4557106 4557247 -139725242 - L1MC3 LINE L1 -1449 6336 6196 * 4262 250 124 40 chr12 4557236 4557532 -139724957 - L1MC1 LINE L1 -1480 4735 4465 315 0 0 0 chr12 4557532 4557567 -139724922 + (TG)n Simple_repeat Simple_repeat 2 36 0 4262 250 124 40 chr12 4557567 4557747 -139724742 - L1MC1 LINE L1 -1750 4465 4302 1505 166 110 9 chr12 4557747 4558073 -139724416 + MER46B DNA MER2_type 1 234 -2 4262 250 124 40 chr12 4558073 4558860 -139723629 - L1MC1 LINE L1 -1913 4302 3583 1829 142 3 10 chr12 4558860 4559148 -139723341 - AluSx SINE Alu -21 291 6 4262 250 124 40 chr12 4559148 4560382 -139722107 - L1MC1 LINE L1 -2632 3583 2073 965 191 0 0 chr12 4560388 4560545 -139721944 - AluSc SINE Alu -19 290 134 1299 284 126 36 chr12 4560557 4561447 -139721042 - L1MC1 LINE L1 -4318 2078 1109 2492 90 0 0 chr12 4562163 4562473 -139720016 + AluSg SINE Alu 1 310 0 23 0 0 0 chr12 4562729 4562752 -139719737 + AT_rich Low_complexity Low_complexity 1 23 0 288 0 0 0 chr12 4564240 4564272 -139718217 + (T)n Simple_repeat Simple_repeat 1 32 0 355 198 105 0 chr12 4565706 4565792 -139716697 - L2 LINE L2 -31 3282 3188 299 333 19 28 chr12 4565957 4566065 -139716424 - MIR3 SINE MIR -25 183 77 3713 19 0 0 chr12 4566190 4566609 -139715880 + L1PA2 LINE L1 5737 6155 0 284 246 0 0 chr12 4566625 4566690 -139715799 + MIR SINE MIR 2 66 -196 224 330 0 30 chr12 4567518 4567618 -139714871 + L2 LINE L2 2999 3095 -177 2424 83 0 3 chr12 4568637 4568938 -139713551 + AluY SINE Alu 1 300 -11 261 221 270 22 chr12 4569313 4569481 -139713008 + MIR SINE MIR 36 233 -29 342 325 8 0 chr12 4569958 4570081 -139712408 + MIR SINE MIR 74 197 -65 2114 118 10 0 chr12 4570799 4571088 -139711401 - AluSx SINE Alu -20 292 1 2704 52 0 0 chr12 4571692 4571999 -139710490 - AluY SINE Alu -4 307 1 239 242 15 15 chr12 4572142 4572208 -139710281 + L2 LINE L2 3247 3312 -1 23 0 0 0 chr12 4572527 4572550 -139709939 + AT_rich Low_complexity Low_complexity 1 23 0 573 76 0 0 chr12 4572992 4573071 -139709418 + (TGGA)n Simple_repeat Simple_repeat 1 79 0 315 49 0 0 chr12 4573464 4573505 -139708984 + (CA)n Simple_repeat Simple_repeat 2 42 0 231 331 63 49 chr12 4574985 4575127 -139707362 - L2 LINE L2 -22 3250 3107 347 259 38 63 chr12 4575206 4575364 -139707125 - MIR SINE MIR -50 212 59 750 247 60 8 chr12 4575409 4575644 -139706845 - MIR SINE MIR -3 259 13 1888 106 31 91 chr12 4576416 4576736 -139705753 + AluSx SINE Alu 1 301 -11 381 302 54 27 chr12 4577256 4577405 -139705084 + MER5B DNA MER1_type 1 153 -25 2019 130 17 0 chr12 4578098 4578391 -139704098 + AluSx SINE Alu 1 298 -14 208 181 69 35 chr12 4579419 4579535 -139702954 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 * 336 224 45 0 chr12 4579493 4579627 -139702862 + (TA)n Simple_repeat Simple_repeat 2 141 0 28 0 0 0 chr12 4579631 4579659 -139702830 + AT_rich Low_complexity Low_complexity 1 28 0 194 276 0 11 chr12 4579917 4580004 -139702485 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 2367 117 6 0 chr12 4580785 4581135 -139701354 + L1PA16 LINE L1 5811 6162 -4 1462 163 48 7 chr12 4581443 4581713 -139700776 + L1MC2 LINE L1 6015 6295 -49 232 170 0 0 chr12 4581713 4581760 -139700729 + T-rich Low_complexity Low_complexity 1 47 0 1222 14 0 0 chr12 4581761 4581900 -139700589 - L1PA2 LINE L1 0 6155 6017 305 154 0 0 chr12 4581900 4581948 -139700541 + L1MC2 LINE L1 6282 6333 -11 443 101 29 0 chr12 4582173 4582242 -139700247 - Alu SINE Alu -243 75 5 24 77 0 0 chr12 4582242 4582294 -139700195 + AT_rich Low_complexity Low_complexity 1 52 0 27 29 0 0 chr12 4582667 4582701 -139699788 + AT_rich Low_complexity Low_complexity 1 34 0 270 137 20 0 chr12 4583848 4583899 -139698590 - HSMAR1 DNA Mariner -2 1285 1234 30 0 0 0 chr12 4583917 4583947 -139698542 + AT_rich Low_complexity Low_complexity 1 30 0 2231 116 0 0 chr12 4583947 4584248 -139698241 + AluSx SINE Alu 5 305 -7 319 217 87 22 chr12 4584291 4584383 -139698106 - MIR SINE MIR -78 130 33 2526 52 0 0 chr12 4585314 4585604 -139696885 - AluY SINE Alu -21 290 1 403 280 87 0 chr12 4585927 4586077 -139696412 - MIR SINE MIR -71 191 29 291 28 0 0 chr12 4586453 4586489 -139696000 + (TG)n Simple_repeat Simple_repeat 2 37 0 501 296 91 9 chr12 4587110 4587330 -139695159 + MIR SINE MIR 6 243 -19 209 139 23 0 chr12 4587359 4587402 -139695087 + (TTG)n Simple_repeat Simple_repeat 2 45 0 211 245 0 0 chr12 4587522 4587571 -139694918 + L2 LINE L2 3265 3313 0 2097 72 0 82 chr12 4587892 4588271 -139694218 - AluSc SINE Alu 0 354 1 259 288 0 68 chr12 4588663 4588781 -139693708 - MIR SINE MIR -75 187 78 324 252 99 18 chr12 4588907 4589018 -139693471 + MIR SINE MIR 49 168 -94 562 286 23 98 chr12 4589168 4589567 -139692922 - L2 LINE L2 0 3272 2904 2436 90 0 0 chr12 4589618 4589919 -139692570 + AluSx SINE Alu 1 301 -11 393 329 139 34 chr12 4589920 4590637 -139691852 - L2 LINE L2 -452 2862 2070 422 310 124 0 chr12 4591338 4591580 -139690909 - L2 LINE L2 -1265 2049 1778 1652 161 46 18 chr12 4591854 4592139 -139690350 - AluJb SINE Alu -19 293 1 1972 151 0 0 chr12 4592279 4592557 -139689932 + AluSx SINE Alu 1 278 -34 24 0 0 0 chr12 4593009 4593033 -139689456 + AT_rich Low_complexity Low_complexity 1 24 0 2317 103 0 0 chr12 4593102 4593403 -139689086 + AluY SINE Alu 1 301 -10 1011 220 19 6 chr12 4593419 4593640 -139688849 - MSTD LTR MaLR -4 392 203 220 135 19 19 chr12 4593653 4593705 -139688784 + GA-rich Low_complexity Low_complexity 4 55 0 461 178 0 0 chr12 4593768 4593841 -139688648 - MSTD LTR MaLR -323 73 1 2042 219 62 85 chr12 4593841 4594751 -139687738 - HAL1b LINE L1 -89 1259 371 185 40 0 0 chr12 4594787 4594812 -139687677 - MIR SINE MIR -25 237 213 648 254 113 29 chr12 4594871 4595146 -139687343 - HAL1b LINE L1 -981 367 70 285 329 4 9 chr12 4595216 4595355 -139687134 + CT-rich Low_complexity Low_complexity 1 138 0 417 73 0 61 chr12 4595563 4595645 -139686844 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 2136 125 3 13 chr12 4595924 4596227 -139686262 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr12 4596228 4596248 -139686241 + (TA)n Simple_repeat Simple_repeat 1 20 0 728 284 192 22 chr12 4596256 4596615 -139685874 + MLT1H1 LTR MaLR 27 446 -109 6941 98 34 4 chr12 4597983 4598944 -139683545 + THE1B-int LTR MaLR 286 1282 -298 1406 94 94 47 chr12 4598945 4599158 -139683331 + AluY SINE Alu 72 294 -17 2469 77 0 3 chr12 4599158 4599469 -139683020 + THE1B-int LTR MaLR 1271 1580 0 2436 106 19 30 chr12 4599469 4599837 -139682652 + THE1B LTR MaLR 1 364 0 255 274 55 0 chr12 4600681 4600754 -139681735 - MIR SINE MIR -113 149 73 2353 97 0 10 chr12 4600914 4601222 -139681267 - AluSq SINE Alu -8 305 1 394 234 109 15 chr12 4601337 4601474 -139681015 - MLT1L LTR MaLR 0 615 466 272 243 118 5 chr12 4601475 4601563 -139680926 - MLT1L LTR MaLR -191 391 235 319 246 71 60 chr12 4601851 4602034 -139680455 - L1ME4a LINE L1 -9 6112 5928 22 0 0 0 chr12 4602093 4602115 -139680374 + AT_rich Low_complexity Low_complexity 1 22 0 1365 218 14 7 chr12 4602231 4602516 -139679973 - L1ME4a LINE L1 -338 5783 5497 296 300 25 21 chr12 4602566 4602686 -139679803 + MIR SINE MIR 2 114 -94 2308 98 0 0 chr12 4602730 4603025 -139679464 - AluSg SINE Alu -15 295 1 708 192 32 0 chr12 4603178 4603334 -139679155 - Charlie1b DNA MER1_type -9 514 354 1116 175 0 73 chr12 4603336 4603610 -139678879 + AluJb SINE Alu 40 293 -19 1504 176 119 0 chr12 4603621 4603933 -139678556 - Charlie1b DNA MER1_type -167 356 8 275 200 0 0 chr12 4603933 4603983 -139678506 + MLT1L LTR MaLR 156 205 -410 23 33 0 0 chr12 4605038 4605068 -139677421 + AT_rich Low_complexity Low_complexity 1 30 0 287 175 17 0 chr12 4605069 4605126 -139677363 - AluJ/FLAM SINE Alu -205 97 55 183 243 0 0 chr12 4605338 4605375 -139677114 - MIR3 SINE MIR -3 205 169 288 219 62 0 chr12 4607013 4607077 -139675412 + MIR SINE MIR 86 153 -55 430 195 37 137 chr12 4607094 4607284 -139675205 + MER5B DNA MER1_type 6 176 -2 194 298 0 0 chr12 4607923 4607970 -139674519 - MIR SINE MIR 0 262 216 210 293 0 0 chr12 4607972 4608054 -139674435 + T-rich Low_complexity Low_complexity 1 82 0 2120 114 20 0 chr12 4608060 4608366 -139674123 - AluSx SINE Alu 0 312 1 239 203 0 31 chr12 4608366 4608423 -139674066 - MIR SINE MIR -60 202 146 1458 185 124 43 chr12 4608423 4608769 -139673720 + MLT1A2 LTR MaLR 1 374 0 1900 133 3 7 chr12 4608770 4609072 -139673417 - AluJo SINE Alu -1 311 11 262 326 33 0 chr12 4609078 4609179 -139673310 - MIR SINE MIR -67 141 38 272 278 188 15 chr12 4609950 4610083 -139672406 - MIR SINE MIR -56 206 51 632 183 67 39 chr12 4610222 4610402 -139672087 - MER53 DNA DNA -4 185 1 882 129 232 178 chr12 4610549 4610859 -139671630 - LTR12 LTR ERV1 -228 486 153 2062 118 13 0 chr12 4610859 4611165 -139671324 - AluY SINE Alu -1 310 1 882 129 232 178 chr12 4611165 4611203 -139671286 - LTR12 LTR ERV1 -561 153 119 250 231 0 0 chr12 4611205 4611257 -139671232 - LTR30 LTR ERV1 -670 52 1 1541 223 3 0 chr12 4611310 4611633 -139670856 + L1MB3 LINE L1 5854 6177 -6 1343 210 93 110 chr12 4612531 4613292 -139669197 - MER20B DNA MER1_type 0 783 36 376 110 14 14 chr12 4613345 4613418 -139669071 + (TTTCC)n Simple_repeat Simple_repeat 2 74 0 2864 142 21 4 chr12 4613572 4614045 -139668444 + L1PB4 LINE L1 5662 6142 -14 1610 160 68 0 chr12 4614090 4614371 -139668118 - AluJb SINE Alu -12 300 1 284 285 0 80 chr12 4614419 4614556 -139667933 - MIR SINE MIR -51 211 86 301 309 22 37 chr12 4614645 4614781 -139667708 + L2 LINE L2 3180 3313 0 899 273 62 4 chr12 4615009 4615236 -139667253 - MIR SINE MIR -2 260 21 25 31 0 0 chr12 4615525 4615557 -139666932 + AT_rich Low_complexity Low_complexity 1 32 0 1509 141 32 25 chr12 4615560 4615844 -139666645 - L1MA5A LINE L1 -9 6288 6003 1960 160 0 0 chr12 4616705 4617011 -139665478 + AluSx SINE Alu 1 306 -6 218 211 21 42 chr12 4617409 4617504 -139664985 + C-rich Low_complexity Low_complexity 6 98 0 589 208 75 0 chr12 4617543 4617663 -139664826 - MER20 DNA MER1_type -90 129 1 1116 234 72 41 chr12 4617847 4618210 -139664279 + MLT1B LTR MaLR 6 379 -11 2093 103 33 0 chr12 4619167 4619469 -139663020 - AluSx SINE Alu 0 312 1 1740 106 41 24 chr12 4619655 4619797 -139662692 - AluSx SINE Alu -14 298 160 2744 123 38 131 chr12 4619797 4620408 -139662081 - MER41C LTR ERV1 0 554 1 1740 106 41 24 chr12 4620408 4620558 -139661931 - AluSx SINE Alu -152 160 1 917 142 0 0 chr12 4620558 4620692 -139661797 - AluJb SINE Alu -177 135 2 308 276 52 9 chr12 4620752 4620868 -139661621 + L1MC1 LINE L1 5883 6003 -330 827 194 0 0 chr12 4620923 4621083 -139661406 + AluJb SINE Alu 132 291 -21 237 157 146 79 chr12 4621123 4621212 -139661277 + L1MB8 LINE L1 6040 6134 -44 291 104 0 0 chr12 4621599 4621647 -139660842 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 2108 82 4 0 chr12 4621647 4621927 -139660562 - AluSp SINE Alu -32 281 1 2136 100 0 19 chr12 4621930 4622239 -139660250 - AluSx SINE Alu -9 303 1 324 294 154 37 chr12 4622753 4622889 -139659600 + MER5A DNA MER1_type 33 184 -5 322 254 18 64 chr12 4622883 4622993 -139659496 + L2 LINE L2 3168 3272 0 * 200 371 22 22 chr12 4623088 4623177 -139659312 + MIR3 SINE MIR 104 192 -16 2298 77 0 19 chr12 4623918 4624230 -139658259 - AluY SINE Alu -5 306 1 2389 67 0 0 chr12 4624617 4624916 -139657573 + AluY SINE Alu 1 299 -12 1560 160 52 10 chr12 4625897 4626185 -139656304 + AluJb SINE Alu 1 300 -12 276 279 109 73 chr12 4628812 4628977 -139653512 - MIR3 SINE MIR -5 203 33 263 326 36 14 chr12 4629065 4629203 -139653286 + MIR3 SINE MIR 13 153 -55 1796 114 5 152 chr12 4629407 4629802 -139652687 + MER1B DNA MER1_type 1 337 0 180 315 19 0 chr12 4630512 4630566 -139651923 + L2 LINE L2 3138 3192 -80 1577 149 32 18 chr12 4630617 4630899 -139651590 + AluJo SINE Alu 10 295 -17 185 182 0 0 chr12 4631187 4631220 -139651269 + L2 LINE L2 3240 3272 0 532 331 6 0 chr12 4631319 4631476 -139651013 + MIR SINE MIR 78 235 -27 529 281 134 77 chr12 4631877 4632347 -139650142 + L1MC4a LINE L1 4794 5290 -856 1121 264 108 48 chr12 4632371 4632760 -139649729 + L1MC4a LINE L1 5337 5770 -2038 2003 101 31 3 chr12 4632760 4633048 -139649441 + AluSc SINE Alu 11 306 -3 1121 264 108 48 chr12 4633048 4633215 -139649274 + L1MC4a LINE L1 5770 5926 -1882 206 245 0 0 chr12 4633929 4633982 -139648507 + T-rich Low_complexity Low_complexity 1 53 0 257 271 40 66 chr12 4635445 4635596 -139646893 - MIR3 SINE MIR -16 192 46 279 328 26 72 chr12 4637139 4637334 -139645155 - MER5A DNA MER1_type -3 186 1 282 282 0 0 chr12 4638212 4638290 -139644199 + MER69 DNA AcHobo 1 78 -99 582 267 23 8 chr12 4640760 4640891 -139641598 - MIR SINE MIR -106 156 24 592 271 94 6 chr12 4642443 4642613 -139639876 + MIR SINE MIR 21 205 -57 251 299 153 69 chr12 4645249 4645582 -139636907 + L2 LINE L2 2799 3156 -116 201 367 51 0 chr12 4645709 4645788 -139636701 + L2 LINE L2 3187 3269 -3 3665 271 44 28 chr12 4645939 4647212 -139635277 + L1MEc LINE L1 16 756 -5640 2033 130 3 3 chr12 4647212 4647520 -139634969 + AluSg SINE Alu 1 308 -2 3665 271 44 28 chr12 4647520 4647962 -139634527 + L1MEc LINE L1 756 1189 -5207 1931 213 29 17 chr12 4647948 4648361 -139634128 + L1MC1 LINE L1 5 422 -6004 * 2117 126 152 0 chr12 4648354 4648775 -139633714 + L1MC1 LINE L1 1035 1519 -4907 2039 155 159 80 chr12 4648782 4648927 -139633562 + MER39 LTR ERV1 20 152 -555 2009 110 0 4 chr12 4648927 4649208 -139633281 + AluSx SINE Alu 1 280 -32 2039 155 159 80 chr12 4649208 4649577 -139632912 + MER39 LTR ERV1 152 575 -132 871 118 69 0 chr12 4649579 4649723 -139632766 - L1MCa LINE L1 -4759 1667 1514 255 232 0 18 chr12 4649723 4649779 -139632710 - MER39 LTR ERV1 0 707 653 747 180 77 16 chr12 4649786 4649980 -139632509 + L1MC1 LINE L1 1977 2182 -4244 2269 97 0 3 chr12 4649980 4650290 -139632199 + AluSx SINE Alu 1 309 -3 792 183 0 15 chr12 4650305 4650442 -139632047 + FLAM_C SINE Alu 6 140 -3 8878 220 39 17 chr12 4650473 4652891 -139629598 + L1MC1 LINE L1 2170 4533 -2080 2263 80 3 10 chr12 4652891 4653179 -139629310 + AluSq SINE Alu 9 294 -19 8878 220 39 17 chr12 4653179 4654532 -139627957 + L1MC1 LINE L1 4533 6056 -557 2237 107 3 0 chr12 4654532 4654831 -139627658 + AluSg SINE Alu 1 300 -10 8878 220 39 17 chr12 4654831 4655385 -139627104 + L1MC1 LINE L1 6056 6596 -17 348 255 49 11 chr12 4655409 4655535 -139626954 + L1ME1 LINE L1 1500 1728 -4916 2256 59 52 0 chr12 4655571 4655861 -139626628 + AluY SINE Alu 1 305 -6 2603 182 31 2 chr12 4655953 4656469 -139626020 - L1MA6 LINE L1 0 6300 5770 2070 254 149 14 chr12 4656472 4656484 -139626005 + L1ME1 LINE L1 1874 1883 -4761 2175 69 4 7 chr12 4656484 4656759 -139625730 + AluSc SINE Alu 33 306 -3 2070 254 149 14 chr12 4656759 4657984 -139624505 + L1ME1 LINE L1 1883 3225 -3419 * 2840 222 95 34 chr12 4657982 4658187 -139624302 + L1ME1 LINE L1 4028 4219 -2425 2388 66 0 26 chr12 4658187 4658491 -139623998 - AluY SINE Alu -15 296 1 2840 222 95 34 chr12 4658491 4659205 -139623284 + L1ME1 LINE L1 4219 5003 -1641 1043 229 16 12 chr12 4659215 4659464 -139623025 + MLT2D LTR ERVL 1 250 -164 5599 143 6 28 chr12 4659507 4659829 -139622660 + L1MA6 LINE L1 5469 5796 -1002 200 35 35 0 chr12 4659829 4659858 -139622631 + (CAA)n Simple_repeat Simple_repeat 1 30 0 5599 143 6 28 chr12 4659858 4660787 -139621702 + L1MA6 LINE L1 5796 6692 -106 3064 237 28 11 chr12 4660792 4661546 -139620943 + L1MB7 LINE L1 5407 6173 -11 785 251 144 0 chr12 4661564 4661835 -139620654 + L1ME1 LINE L1 5114 5423 -1221 1288 205 27 67 chr12 4661843 4662214 -139620275 + MLT1D LTR MaLR 1 356 -149 2800 213 72 57 chr12 4662217 4662338 -139620151 + L1ME1 LINE L1 5557 5675 -989 189 0 0 0 chr12 4662338 4662359 -139620130 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1813 167 0 0 chr12 4662362 4662644 -139619845 - AluSx SINE Alu -30 282 1 2800 213 72 57 chr12 4662644 4663613 -139618876 + L1ME1 LINE L1 5676 6661 -3 341 329 120 21 chr12 4663834 4664068 -139618421 - L3 LINE CR1 -1 1576 1320 232 301 41 0 chr12 4664398 4664471 -139618018 + L3 LINE CR1 1486 1561 -16 460 252 202 38 chr12 4664569 4664831 -139617658 + MLT1L LTR MaLR 311 615 0 2284 188 62 10 chr12 4664908 4665420 -139617069 + MLT1F LTR MaLR 4 542 0 947 242 0 0 chr12 4665735 4665913 -139616576 + MER58A DNA MER1_type 1 178 -46 194 150 25 0 chr12 4666185 4666225 -139616264 + CT-rich Low_complexity Low_complexity 2 42 0 219 69 0 0 chr12 4666321 4666350 -139616139 + (CA)n Simple_repeat Simple_repeat 2 30 0 229 333 65 28 chr12 4666866 4666974 -139615515 - L2 LINE L2 -88 3184 3073 5309 159 52 61 chr12 4667855 4669212 -139613277 + L1M2 LINE L1 4187 5535 -743 256 77 0 0 chr12 4669247 4669286 -139613203 + L1M2 LINE L1 5785 5823 -477 2455 151 26 28 chr12 4669315 4669811 -139612678 + L1MA8 LINE L1 5786 6280 -11 566 275 185 18 chr12 4669976 4670198 -139612291 - MIR SINE MIR 0 262 4 479 227 17 0 chr12 4670664 4670783 -139611706 + L1MB5 LINE L1 6054 6174 0 240 295 63 53 chr12 4671119 4671214 -139611275 + L2 LINE L2 3160 3255 -17 358 293 169 38 chr12 4671916 4672182 -139610307 - L2 LINE L2 -20 3252 2952 896 253 0 10 chr12 4672256 4672454 -139610035 + MER58A DNA MER1_type 1 196 -28 1970 213 89 38 chr12 4672933 4674223 -139608266 - L1MDb LINE L1 -4227 2179 771 519 303 156 45 chr12 4674483 4674836 -139607653 + L2 LINE L2 2920 3311 -2 235 330 45 0 chr12 4675032 4675120 -139607369 - MIR SINE MIR -111 151 60 372 276 86 32 chr12 4675125 4675467 -139607022 - L1MEc LINE L1 -892 1684 1268 691 269 51 76 chr12 4675475 4675787 -139606702 + L1ME1 LINE L1 4947 5265 -901 2122 125 0 0 chr12 4675787 4676076 -139606413 + AluSg SINE Alu 1 289 -21 691 269 51 76 chr12 4676076 4676195 -139606294 + L1ME1 LINE L1 5265 5386 -780 2355 98 7 0 chr12 4676195 4676502 -139605987 + AluSx SINE Alu 2 310 -2 691 269 51 76 chr12 4676502 4677019 -139605470 + L1ME1 LINE L1 5386 5867 -299 1410 225 137 63 chr12 4677190 4677701 -139604788 + MLT1H LTR MaLR 1 549 0 278 127 13 38 chr12 4678730 4678809 -139603680 + GA-rich Low_complexity Low_complexity 3 79 0 564 260 106 41 chr12 4678810 4679056 -139603433 - MIR SINE MIR 0 262 1 2566 244 16 4 chr12 4679358 4679919 -139602570 + MER82 DNA MER2_type 1 568 -85 384 221 0 0 chr12 4680030 4680107 -139602382 + MER82 DNA MER2_type 577 653 0 1087 168 35 0 chr12 4681812 4682014 -139600475 + MER2 DNA MER2_type 1 209 -136 21 57 0 0 chr12 4684214 4684249 -139598240 + AT_rich Low_complexity Low_complexity 1 35 0 1778 156 72 46 chr12 4686152 4686203 -139596286 - Charlie1b DNA MER1_type -2240 521 473 686 213 8 0 chr12 4686203 4686325 -139596164 + FLAM_A SINE Alu 1 123 -10 1778 156 72 46 chr12 4686325 4686689 -139595800 - Charlie1b DNA MER1_type -2288 473 95 201 369 54 39 chr12 4687528 4687658 -139594831 + L2 LINE L2 3137 3268 -4 2280 91 0 0 chr12 4688080 4688385 -139594104 + AluSx SINE Alu 1 305 0 21 0 0 0 chr12 4688487 4688508 -139593981 + AT_rich Low_complexity Low_complexity 1 21 0 2963 220 39 8 chr12 4688543 4689283 -139593206 - L1M4 LINE L1 -930 5216 4454 23 0 0 0 chr12 4690208 4690231 -139592258 + AT_rich Low_complexity Low_complexity 1 23 0 1884 225 115 42 chr12 4691218 4691791 -139590698 + L1ME3A LINE L1 5556 6170 0 1886 109 7 59 chr12 4692934 4693238 -139589251 - MER1B DNA MER1_type 0 339 52 576 208 9 0 chr12 4693458 4693564 -139588925 - FLAM_A SINE Alu -18 124 18 183 295 0 0 chr12 4694058 4694136 -139588353 + GA-rich Low_complexity Low_complexity 3 80 0 216 0 0 0 chr12 4694915 4694939 -139587550 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2160 107 0 0 chr12 4694939 4695220 -139587269 - AluSc SINE Alu -28 281 1 1090 291 156 29 chr12 4695224 4695646 -139586843 + L2 LINE L2 2329 2696 -617 3502 116 27 12 chr12 4695646 4696164 -139586325 + MER1A DNA MER1_type 1 526 -1 1090 291 156 29 chr12 4696164 4696626 -139585863 + L2 LINE L2 2696 3313 0 420 288 51 24 chr12 4697529 4697722 -139584767 + MIR SINE MIR 16 218 -44 25 51 0 0 chr12 4697779 4697818 -139584671 + AT_rich Low_complexity Low_complexity 1 39 0 326 287 131 16 chr12 4748696 4748818 -139533671 + MARNA DNA Mariner 57 192 -394 1189 262 42 42 chr12 4749973 4750404 -139532085 + L1MC4a LINE L1 5536 5966 -1842 2118 144 3 0 chr12 4751002 4751308 -139531181 + AluSx SINE Alu 2 308 -4 27071 28 18 1 chr12 4751434 4757446 -139525043 + L1PA2 LINE L1 1 6161 0 1042 31 0 8 chr12 4757504 4757633 -139524856 + L1PA3 LINE L1 6028 6155 0 3169 166 76 29 chr12 4757802 4758496 -139523993 + L1MA9 LINE L1 5576 6302 -10 3562 94 37 2 chr12 4758899 4759418 -139523071 + L1PA11 LINE L1 5638 6174 0 23 86 0 0 chr12 4760102 4760160 -139522329 + AT_rich Low_complexity Low_complexity 1 58 0 207 0 0 0 chr12 4760223 4760246 -139522243 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 264 30 0 0 chr12 4760245 4760278 -139522211 + (GA)n Simple_repeat Simple_repeat 2 34 0 860 136 0 0 chr12 4761114 4761232 -139521257 + FLAM_C SINE Alu 1 118 -25 30 0 0 0 chr12 4761232 4761262 -139521227 + AT_rich Low_complexity Low_complexity 1 30 0 1493 148 129 8 chr12 4762209 4762473 -139520016 + MER1B DNA MER1_type 44 339 0 1623 199 65 3 chr12 4762473 4762825 -139519664 + L1ME1 LINE L1 96 469 -5954 563 241 73 102 chr12 4762831 4763146 -139519343 + L1ME1 LINE L1 851 1156 -5267 1059 65 7 0 chr12 4763179 4763317 -139519172 + L1PB1 LINE L1 6013 6151 0 307 217 152 0 chr12 4763523 4763615 -139518874 + L1ME1 LINE L1 1246 1351 -5072 2109 100 0 31 chr12 4763617 4763906 -139518583 + AluSg SINE Alu 1 280 -30 574 213 85 16 chr12 4763934 4764141 -139518348 + L1ME1 LINE L1 1331 1542 -4890 270 242 0 0 chr12 4764174 4764236 -139518253 + L1ME1 LINE L1 4422 4483 -2458 180 0 0 0 chr12 4764236 4764256 -139518233 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1223 191 39 13 chr12 4764326 4764457 -139518032 + L1ME1 LINE L1 5786 5912 -1029 1624 176 42 3 chr12 4764457 4764769 -139517720 + L1MC1 LINE L1 6001 6324 -9 1223 191 39 13 chr12 4764769 4764946 -139517543 + L1ME1 LINE L1 5912 6102 -839 2378 193 67 27 chr12 4764952 4765516 -139516973 + L1ME1 LINE L1 6170 6756 -205 483 198 52 13 chr12 4765526 4765658 -139516831 + L1ME1 LINE L1 6836 7129 0 5215 41 2 5 chr12 4765880 4766513 -139515976 + L1PA5 LINE L1 5524 6154 0 355 143 32 16 chr12 4766572 4766635 -139515854 - AluJ/FRAM SINE Alu -8 294 231 307 238 75 0 chr12 4766680 4766760 -139515729 + MER112 DNA MER1_type 1 86 -174 237 269 0 125 chr12 4766965 4767069 -139515420 - L2 LINE L2 0 3272 3182 244 264 107 14 chr12 4767332 4767472 -139515017 + L2 LINE L2 3090 3242 -71 22 0 0 0 chr12 4768210 4768232 -139514257 + AT_rich Low_complexity Low_complexity 1 22 0 931 201 31 35 chr12 4768701 4768930 -139513559 + L1ME3A LINE L1 5938 6165 -5 2345 98 0 0 chr12 4769098 4769393 -139513096 + AluSx SINE Alu 1 295 -17 390 21 0 0 chr12 4771435 4771482 -139511007 + (CA)n Simple_repeat Simple_repeat 2 48 0 634 263 202 3 chr12 4771917 4772144 -139510345 + MIR SINE MIR 1 251 -11 314 315 39 62 chr12 4774180 4774440 -139508049 + L2 LINE L2 490 743 -2571 851 39 0 0 chr12 4774452 4774554 -139507935 + MER83 LTR ERV1 1 102 -346 1146 74 217 0 chr12 4774556 4774745 -139507744 - MER30 DNA MER1_type 0 230 1 * 1698 144 101 15 chr12 4774745 4775069 -139507420 + MER83 LTR ERV1 97 448 0 768 322 162 37 chr12 4775073 4775806 -139506683 + L2 LINE L2 759 1583 -1731 342 342 84 8 chr12 4775816 4776053 -139506436 + L2 LINE L2 1694 1948 -1366 301 221 105 0 chr12 4776078 4776173 -139506316 + HsTC2 DNA Tc2 1794 1898 0 908 139 61 11 chr12 4776276 4776456 -139506033 - MER53 DNA DNA 0 189 1 1881 158 3 7 chr12 4776941 4777239 -139505250 - AluJb SINE Alu -13 299 3 473 296 45 75 chr12 4777652 4777747 -139504742 + MIR3 SINE MIR 6 93 -115 791 232 27 16 chr12 4777747 4777932 -139504557 - MER5A DNA MER1_type -2 187 1 473 296 45 75 chr12 4777932 4778035 -139504454 + MIR3 SINE MIR 93 198 -10 26 50 0 0 chr12 4778323 4778363 -139504126 + AT_rich Low_complexity Low_complexity 1 40 0 342 338 81 68 chr12 4779386 4780024 -139502465 + L2 LINE L2 2622 3264 -8 858 257 50 20 chr12 4780319 4780619 -139501870 + L1ME3 LINE L1 5590 5898 -264 280 277 89 30 chr12 4781865 4781966 -139500523 - MIR SINE MIR -150 112 6 1346 297 95 25 chr12 4782221 4782833 -139499656 - L2 LINE L2 -354 2960 2306 1373 227 42 30 chr12 4782854 4783184 -139499305 + Charlie1a DNA MER1_type 1 334 -1121 1086 202 32 9 chr12 4783302 4783520 -139498969 + Charlie1a DNA MER1_type 326 548 -907 1390 133 69 9 chr12 4783629 4783847 -139498642 + MER46A DNA MER2_type 1 231 -5 41 66 0 0 chr12 4784281 4784357 -139498132 + AT_rich Low_complexity Low_complexity 1 76 0 2160 116 7 3 chr12 4785598 4785899 -139496590 - AluSq SINE Alu -11 302 1 5049 144 45 9 chr12 4787179 4788133 -139494356 + L1MB7 LINE L1 5196 6184 0 244 220 68 17 chr12 4788340 4788399 -139494090 + L2 LINE L2 3202 3263 -9 22 35 0 0 chr12 4788422 4788451 -139494038 + AT_rich Low_complexity Low_complexity 1 29 0 1819 160 14 0 chr12 4789609 4789902 -139492587 - AluJo SINE Alu -15 297 1 646 299 56 21 chr12 4790250 4790484 -139492005 - MIR SINE MIR -14 248 7 21 0 0 0 chr12 4790722 4790743 -139491746 + AT_rich Low_complexity Low_complexity 1 21 0 223 421 19 0 chr12 4791528 4791635 -139490854 - L2 LINE L2 -222 3050 2942 202 295 65 36 chr12 4791696 4791835 -139490654 - L2 LINE L2 -471 2843 2701 24 53 0 0 chr12 4791900 4791938 -139490551 + AT_rich Low_complexity Low_complexity 1 38 0 392 274 78 0 chr12 4792017 4792119 -139490370 - L2 LINE L2 -2 3311 3202 939 165 60 22 chr12 4792184 4792366 -139490123 + MER46A DNA MER2_type 47 235 -1 900 124 7 15 chr12 4792367 4792504 -139489985 + L1M3 LINE L1 5612 5747 -424 2014 161 0 0 chr12 4793167 4793478 -139489011 - AluSx SINE Alu -1 311 1 389 266 28 37 chr12 4793682 4793752 -139488737 + L1MC5 LINE L1 7301 7370 -591 2337 97 3 0 chr12 4793752 4794050 -139488439 + AluSx SINE Alu 1 299 -13 389 266 28 37 chr12 4794050 4794197 -139488292 + L1MC5 LINE L1 7370 7516 -445 551 217 108 43 chr12 4794204 4794481 -139488008 + L1MC5 LINE L1 7621 7915 -46 272 177 146 52 chr12 4794539 4794635 -139487854 + L1ME4a LINE L1 5999 6103 -18 24 53 0 0 chr12 4794693 4794731 -139487758 + AT_rich Low_complexity Low_complexity 1 38 0 696 239 22 22 chr12 4795188 4795372 -139487117 - MIR SINE MIR -2 260 77 466 315 43 16 chr12 4795876 4796060 -139486429 - MIR SINE MIR -51 211 23 1774 173 90 22 chr12 4796623 4797023 -139485466 - MLT1D LTR MaLR -78 427 1 1184 180 0 9 chr12 4797369 4797580 -139484909 - MER3 DNA MER1_type 0 209 1 330 256 259 41 chr12 4797872 4798239 -139484250 + L2 LINE L2 2529 2975 -339 544 264 121 25 chr12 4798514 4798753 -139483736 + MIR SINE MIR 1 262 0 719 232 98 31 chr12 4799111 4799365 -139483124 - L1ME4a LINE L1 -248 5873 5603 182 400 43 14 chr12 4799647 4799787 -139482702 + L2 LINE L2 2833 2976 -338 863 293 30 19 chr12 4800332 4800602 -139481887 - Charlie8 DNA MER1_type -2141 276 4 28 0 0 0 chr12 4800822 4800850 -139481639 + AT_rich Low_complexity Low_complexity 1 28 0 216 338 198 9 chr12 4803225 4803548 -139478941 + L2 LINE L2 2350 2733 -581 184 316 167 47 chr12 4803588 4803863 -139478626 + L2 LINE L2 2804 3111 -161 2430 56 0 0 chr12 4803988 4804275 -139478214 - AluSc SINE Alu 0 309 23 591 157 37 9 chr12 4804306 4804414 -139478075 - AluSq/x SINE Alu -202 111 2 660 326 70 56 chr12 4805965 4806624 -139475865 + L3 LINE CR1 906 1573 -4 575 149 0 9 chr12 4806697 4806811 -139475678 + L1MA4 LINE L1 6039 6151 -149 32 57 0 0 chr12 4806822 4806875 -139475614 + AT_rich Low_complexity Low_complexity 1 53 0 317 311 38 0 chr12 4807174 4807280 -139475209 + L2 LINE L2 3159 3268 -4 423 257 37 93 chr12 4807903 4808117 -139474372 - MIR3 SINE MIR -6 202 1 2281 98 0 10 chr12 4808166 4808463 -139474026 - AluSx SINE Alu -14 298 5 185 399 42 7 chr12 4808582 4808725 -139473764 + L2 LINE L2 2483 2630 -684 2504 88 0 0 chr12 4810917 4811224 -139471265 - AluSp SINE Alu -6 307 1 398 227 55 18 chr12 4812033 4812143 -139470346 - MIR SINE MIR -100 162 49 923 109 0 0 chr12 4812180 4812299 -139470190 - FLAM_C SINE Alu -24 119 1 1792 155 41 10 chr12 4812463 4812579 -139469910 + AluJb SINE Alu 5 116 -196 408 40 0 0 chr12 4812579 4812629 -139469860 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1792 155 41 10 chr12 4812629 4812803 -139469686 + AluJb SINE Alu 116 304 -8 33 66 0 0 chr12 4813201 4813262 -139469227 + AT_rich Low_complexity Low_complexity 1 61 0 212 224 104 0 chr12 4813868 4813935 -139468554 + L2 LINE L2 3005 3078 -235 458 187 207 33 chr12 4813975 4814125 -139468364 + MER33 DNA MER1_type 1 176 -148 194 114 0 23 chr12 4814128 4814172 -139468317 + (TTTTA)n Simple_repeat Simple_repeat 5 47 0 868 136 35 0 chr12 4814212 4814381 -139468108 + MER33 DNA MER1_type 189 363 0 248 368 8 0 chr12 4814383 4814500 -139467989 + L2 LINE L2 3191 3308 -5 306 234 99 63 chr12 4814516 4814627 -139467862 - L2 LINE L2 0 3313 3199 223 222 321 12 chr12 4814734 4814815 -139467674 + MER5B DNA MER1_type 1 106 -72 2417 58 0 45 chr12 4814822 4815133 -139467356 - AluY SINE Alu -14 297 1 276 307 0 40 chr12 4816219 4816320 -139466169 - MIR SINE MIR -110 152 56 21 0 0 0 chr12 4816380 4816401 -139466088 + AT_rich Low_complexity Low_complexity 1 21 0 2441 84 0 0 chr12 4816482 4816791 -139465698 + AluY SINE Alu 1 309 -2 981 280 33 77 chr12 4817167 4817267 -139465222 - L1M4 LINE L1 -376 5802 5699 2031 131 0 7 chr12 4817267 4817558 -139464931 - AluSx SINE Alu -23 289 1 981 280 33 77 chr12 4817558 4817838 -139464651 - L1M4 LINE L1 -479 5699 5408 207 0 0 0 chr12 4817838 4817861 -139464628 + (TG)n Simple_repeat Simple_repeat 2 24 0 2141 108 0 11 chr12 4817861 4818147 -139464342 - AluSc SINE Alu -26 283 1 981 280 33 77 chr12 4818147 4818428 -139464061 - L1M4 LINE L1 -768 5410 5166 * 5527 188 36 16 chr12 4818409 4819779 -139462710 - L1MC2 LINE L1 -20 6307 4883 644 203 31 8 chr12 4819779 4819907 -139462582 - FLAM_A SINE Alu -2 131 1 5527 188 36 16 chr12 4819907 4820533 -139461956 - L1MC2 LINE L1 -1444 4883 4271 517 254 58 111 chr12 4820673 4821240 -139461249 - L1MC2 LINE L1 -4883 1236 700 267 313 9 35 chr12 4821255 4821370 -139461119 - MIR SINE MIR -131 131 20 2393 92 3 0 chr12 4821533 4821871 -139460618 + AluSc SINE Alu 1 309 0 227 259 56 0 chr12 4822105 4822159 -139460330 - L2 LINE L2 -324 2989 2933 336 329 48 6 chr12 4822445 4822612 -139459877 + MIR3 SINE MIR 7 180 -28 235 204 0 20 chr12 4824276 4824325 -139458164 + CT-rich Low_complexity Low_complexity 2 49 0 1563 127 4 0 chr12 4824354 4824583 -139457906 - Tigger4(Zombi) DNA MER2_type 0 2731 2502 2195 65 25 4 chr12 4824700 4824977 -139457512 + AluSp SINE Alu 1 283 -30 327 104 0 0 chr12 4824977 4825025 -139457464 + (AAATG)n Simple_repeat Simple_repeat 3 50 0 665 162 0 0 chr12 4825674 4825779 -139456710 - AluSg/x SINE Alu -30 282 178 1312 100 0 0 chr12 4826063 4826233 -139456256 - AluSq SINE Alu -143 170 1 242 260 65 13 chr12 4826696 4826773 -139455716 - MER5B DNA MER1_type -2 176 96 197 221 39 78 chr12 4826779 4826856 -139455633 + L2 LINE L2 3199 3272 0 2590 63 0 0 chr12 4827091 4827393 -139455096 - AluY SINE Alu -9 302 1 3068 28 3 0 chr12 4827962 4828321 -139454168 + L1PA4 LINE L1 5788 6147 -8 1382 154 118 37 chr12 4828476 4828748 -139453741 + AluJo SINE Alu 5 298 -4 345 24 0 0 chr12 4829244 4829286 -139453203 + (CA)n Simple_repeat Simple_repeat 2 43 0 553 254 129 0 chr12 4829401 4829594 -139452895 - MIR SINE MIR -39 223 6 274 232 0 0 chr12 4830512 4830568 -139451921 + MER113 DNA MER1_type? 4 59 -462 918 199 0 11 chr12 4830591 4830772 -139451717 - FRAM SINE Alu -5 171 1 3631 107 71 0 chr12 4831757 4832309 -139450180 - L1MA2 LINE L1 0 6304 5714 529 274 28 22 chr12 4832495 4832674 -139449815 - MIR SINE MIR -35 227 48 2060 229 122 18 chr12 4833889 4834510 -139447979 - MER76 LTR ERV 0 688 3 514 279 94 35 chr12 4834702 4835021 -139447468 - L3 LINE CR1 -197 1380 1043 227 181 138 60 chr12 4835277 4835393 -139447096 - L3 LINE CR1 -660 917 793 321 236 292 14 chr12 4836450 4836594 -139445895 - MER5A DNA MER1_type -2 187 4 2003 115 40 0 chr12 4836784 4837062 -139445427 - AluSq SINE Alu -24 289 1 310 305 21 0 chr12 4837887 4837982 -139444507 - MIR3 SINE MIR -22 186 90 306 321 139 12 chr12 4838279 4838444 -139444045 - MIR3 SINE MIR -7 201 16 2133 98 0 80 chr12 4840296 4840622 -139441867 + AluSx SINE Alu 1 300 -12 777 179 8 0 chr12 4840633 4840756 -139441733 + FLAM_C SINE Alu 1 124 -9 360 320 122 12 chr12 4840898 4841145 -139441344 + Charlie8 DNA MER1_type 1 274 -2143 198 0 0 0 chr12 4841809 4841831 -139440658 + (T)n Simple_repeat Simple_repeat 1 22 0 196 297 0 14 chr12 4842122 4842196 -139440293 - L2 LINE L2 -222 3050 2978 378 291 20 33 chr12 4842396 4842547 -139439942 + MIR3 SINE MIR 47 195 -13 328 274 142 0 chr12 4842857 4842970 -139439519 - L2 LINE L2 -7 3265 3137 1584 235 145 9 chr12 4843153 4843587 -139438902 - MER21B LTR ERV1 -352 511 19 349 256 13 0 chr12 4843609 4843687 -139438802 - MER21B LTR ERV1 -773 90 12 441 269 214 12 chr12 4843780 4844200 -139438289 + L1ME4a LINE L1 5520 6016 -105 32 0 0 0 chr12 4844308 4844340 -139438149 + AT_rich Low_complexity Low_complexity 1 32 0 315 0 0 0 chr12 4844415 4844450 -139438039 + (TG)n Simple_repeat Simple_repeat 2 36 0 249 268 0 37 chr12 4844832 4844914 -139437575 + T-rich Low_complexity Low_complexity 2 80 0 789 256 35 0 chr12 4846491 4846694 -139435795 + MIR SINE MIR 29 238 -24 189 0 0 0 chr12 4847724 4847745 -139434744 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1584 214 119 69 chr12 4847747 4848832 -139433657 - Charlie2b DNA MER1_type -108 2754 1559 362 19 0 39 chr12 4848832 4848884 -139433605 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 1584 214 119 69 chr12 4848884 4848988 -139433501 - Charlie2b DNA MER1_type -1303 1559 1462 246 261 232 22 chr12 4849014 4849152 -139433337 + MIR3 SINE MIR 6 172 -36 187 345 18 0 chr12 4849687 4849742 -139432747 + MIR SINE MIR 30 85 -123 210 359 26 39 chr12 4851786 4851942 -139430547 - MER5A DNA MER1_type 0 189 36 198 356 20 27 chr12 4851815 4851964 -139430525 + MER5A DNA MER1_type 40 187 -2 * 224 312 52 0 chr12 4853034 4853111 -139429378 - MIR SINE MIR -117 145 65 272 238 152 29 chr12 4853519 4853624 -139428865 + MIR3 SINE MIR 82 199 -9 321 355 0 0 chr12 4854071 4854195 -139428294 + L3 LINE CR1 801 924 -653 580 312 42 39 chr12 4854360 4854693 -139427796 + L3 LINE CR1 1243 1576 -1 813 291 87 4 chr12 4855704 4855934 -139426555 + MIR SINE MIR 2 250 -12 493 299 14 41 chr12 4856605 4856826 -139425663 - MLT1K LTR MaLR -7 581 367 182 352 0 55 chr12 4857573 4857664 -139424825 - MIR SINE MIR -129 133 48 193 285 140 39 chr12 4857679 4857858 -139424631 + L3b LINE CR1 1238 1434 -149 342 287 155 0 chr12 4858775 4858904 -139423585 - MIR3 SINE MIR -2 206 58 3355 220 62 43 chr12 4859155 4860009 -139422480 + L1MDa LINE L1 1298 2196 -4344 2251 114 3 0 chr12 4860009 4860307 -139422182 + AluSx SINE Alu 1 299 -13 3355 220 62 43 chr12 4860307 4860847 -139421642 + L1MDa LINE L1 2196 2724 -3816 2097 200 44 68 chr12 4860850 4861092 -139421397 + L1MB7 LINE L1 4838 5084 -1100 955 205 68 0 chr12 4861092 4861297 -139421192 - MER20 DNA MER1_type 0 219 1 2097 200 44 68 chr12 4861297 4861815 -139420674 + L1MB7 LINE L1 5084 5558 -626 1847 154 13 7 chr12 4861815 4862120 -139420369 + AluJo SINE Alu 1 307 -5 2097 200 44 68 chr12 4862120 4862545 -139419944 + L1MB7 LINE L1 5558 5992 -192 339 247 77 29 chr12 4862555 4862725 -139419764 + L1 LINE L1 4655 4832 -1314 2217 73 52 0 chr12 4862748 4863034 -139419455 + AluSg SINE Alu 1 301 -9 292 246 9 27 chr12 4863036 4863123 -139419366 + L1 LINE L1 4950 5036 -1110 6788 133 56 2 chr12 4863123 4864291 -139418198 + Tigger3b DNA MER2_type 1 1231 0 292 246 9 27 chr12 4864291 4864313 -139418176 + L1 LINE L1 5036 5057 -1089 317 284 82 45 chr12 4864338 4864581 -139417908 + L1MC/D LINE L1 5083 5334 -812 5160 129 46 6 chr12 4864587 4866301 -139416188 + L1PA14 LINE L1 4409 6159 -2 709 291 123 14 chr12 4866301 4866731 -139415758 + L1MC/D LINE L1 5316 5792 -2016 21 0 0 0 chr12 4866756 4866777 -139415712 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr12 4866820 4866845 -139415644 + AT_rich Low_complexity Low_complexity 1 25 0 432 0 0 0 chr12 4866855 4866903 -139415586 + (TG)n Simple_repeat Simple_repeat 2 49 0 587 243 158 7 chr12 4867751 4867903 -139414586 - MER5A DNA MER1_type -12 177 3 267 147 27 13 chr12 4868217 4868292 -139414197 + GA-rich Low_complexity Low_complexity 1 76 0 984 280 4 30 chr12 4871462 4871730 -139410759 - MIR SINE MIR 0 262 2 1044 92 0 7 chr12 4871760 4871912 -139410577 - L1PA13 LINE L1 -280 5883 5733 2105 52 4 0 chr12 4871912 4872182 -139410307 + L1PA13 LINE L1 5887 6158 -5 680 313 39 27 chr12 4872727 4872983 -139409506 - MIR SINE MIR -2 260 2 216 0 0 0 chr12 4873002 4873026 -139409463 + (GAAAA)n Simple_repeat Simple_repeat 3 26 0 1249 182 176 6 chr12 4873159 4873511 -139408978 + LTR37A LTR ERV1 13 424 -2 207 69 0 0 chr12 4874132 4874161 -139408328 + (CA)n Simple_repeat Simple_repeat 1 29 0 430 204 8 15 chr12 4874289 4874421 -139408068 + MER31-int LTR ERV1 1312 1442 -3494 293 266 39 34 chr12 4874563 4874770 -139407719 + MER31-int LTR ERV1 1679 1886 -3050 2474 80 0 0 chr12 4875167 4875478 -139407011 - AluY SINE Alu 0 311 1 726 153 48 16 chr12 4875685 4875809 -139406680 + AluJb SINE Alu 2 129 -183 35 24 0 0 chr12 4875809 4875851 -139406638 + AT_rich Low_complexity Low_complexity 1 42 0 1805 169 21 0 chr12 4879294 4879584 -139402905 - AluJo SINE Alu -16 296 1 499 159 104 99 chr12 4879708 4879890 -139402599 + LTR41 LTR ERVL 1 183 -590 405 196 82 44 chr12 4879987 4880145 -139402344 + LTR41 LTR ERVL 604 767 -6 217 235 20 0 chr12 4880148 4880199 -139402290 + L2 LINE L2 3261 3312 -1 198 138 15 62 chr12 4880357 4880422 -139402067 + (TA)n Simple_repeat Simple_repeat 2 63 0 225 235 0 39 chr12 4880962 4881013 -139401476 + L2 LINE L2 3223 3271 -1 190 324 15 15 chr12 4881435 4881503 -139400986 + L2 LINE L2 2397 2464 -850 3162 57 0 37 chr12 4881961 4882343 -139400146 - L1PA6 LINE L1 0 6154 5788 2561 68 0 0 chr12 4882343 4882654 -139399835 - AluY SINE Alu 0 311 1 3162 57 0 37 chr12 4882654 4882707 -139399782 - L1PA6 LINE L1 -366 5788 5735 494 312 0 48 chr12 4883304 4883490 -139398999 - MER5B DNA MER1_type 0 178 2 667 145 73 0 chr12 4883601 4883725 -139398764 - AluSg/x SINE Alu -2 307 175 1079 99 31 31 chr12 4883847 4884009 -139398480 - AluSq SINE Alu -108 205 44 209 353 82 85 chr12 4885063 4885392 -139397097 + L2 LINE L2 2945 3272 0 301 300 12 0 chr12 4886023 4886103 -139396386 - MIR3 SINE MIR -19 189 109 210 216 0 39 chr12 4886571 4886622 -139395867 + L2 LINE L2 3263 3311 -2 2007 138 3 7 chr12 4887168 4887465 -139395024 + AluSx SINE Alu 1 296 -16 1232 116 131 6 chr12 4887909 4888338 -139394151 - MER1A DNA MER1_type 0 533 1 2085 114 17 3 chr12 4888928 4889217 -139393272 + AluSx SINE Alu 2 294 -18 2338 93 7 3 chr12 4889321 4889621 -139392868 - AluSx SINE Alu -11 301 1 311 197 70 14 chr12 4889621 4889692 -139392797 + MIR3 SINE MIR 127 201 -7 279 295 162 46 chr12 4889754 4889927 -139392562 - MIR SINE MIR -50 212 20 826 171 0 0 chr12 4889930 4890059 -139392430 + FLAM_C SINE Alu 2 130 -3 517 276 167 14 chr12 4890925 4891146 -139391343 - L2 LINE L2 -163 3150 2896 311 309 111 37 chr12 4891311 4891473 -139391016 + MIR3 SINE MIR 21 194 -14 279 274 97 9 chr12 4892108 4892221 -139390268 + MIR SINE MIR 84 206 -56 310 364 29 17 chr12 4892589 4892762 -139389727 + MER5B DNA MER1_type 1 175 -3 185 313 75 0 chr12 4892943 4893010 -139389479 - MIR SINE MIR 0 262 191 205 283 0 0 chr12 4893568 4893621 -139388868 - MIR SINE MIR 0 262 210 29 28 0 0 chr12 4893672 4893708 -139388781 + AT_rich Low_complexity Low_complexity 1 36 0 267 262 12 24 chr12 4893877 4893961 -139388528 - MIR SINE MIR 0 262 180 219 357 83 0 chr12 4893957 4894041 -139388448 + L2 LINE L2 3146 3236 -36 * 280 270 90 0 chr12 4894116 4894205 -139388284 - MIR SINE MIR -6 256 160 1861 293 181 20 chr12 4894207 4895216 -139387273 + L2 LINE L2 923 2094 -1220 248 291 9 64 chr12 4895232 4895342 -139387147 + MIR SINE MIR 158 261 -1 820 307 98 9 chr12 4895730 4896046 -139386443 + L3 LINE CR1 1171 1514 -63 1140 220 5 0 chr12 4897646 4897864 -139384625 - MER58A DNA MER1_type -5 219 1 1455 136 136 7 chr12 4897872 4898158 -139384331 + MER33 DNA MER1_type 1 323 -1 405 238 57 8 chr12 4898356 4898478 -139384011 + MER20B DNA MER1_type 65 192 -591 341 269 213 6 chr12 4899236 4899396 -139383093 - MIR SINE MIR -41 221 29 249 292 0 0 chr12 4899533 4899598 -139382891 + CT-rich Low_complexity Low_complexity 3 67 0 213 264 14 42 chr12 4900532 4900604 -139381885 + L3 LINE CR1 908 977 -600 233 325 12 36 chr12 4900946 4901029 -139381460 + L2 LINE L2 3187 3267 -5 26 50 0 0 chr12 4901250 4901290 -139381199 + AT_rich Low_complexity Low_complexity 1 40 0 864 138 0 36 chr12 4901290 4901428 -139381061 - FLAM_C SINE Alu 0 133 1 326 318 0 12 chr12 4902410 4902495 -139379994 - L2 LINE L2 0 3313 3230 2536 323 78 44 chr12 4902544 4902704 -139379785 - L2 LINE L2 -790 2524 2371 845 230 17 0 chr12 4902704 4902878 -139379611 + MER5B DNA MER1_type 1 177 -1 2536 323 78 44 chr12 4902878 4904614 -139377875 - L2 LINE L2 -943 2371 564 301 189 122 14 chr12 4905376 4905450 -139377039 + MIR SINE MIR 20 101 -107 1404 146 3 24 chr12 4905455 4905740 -139376749 - L1MC2 LINE L1 -282 6062 5785 225 108 0 0 chr12 4905845 4905882 -139376607 - L1MB3 LINE L1 -7 6176 6140 1539 196 33 48 chr12 4905883 4906275 -139376214 + MLT1B LTR MaLR 1 386 -4 708 123 9 0 chr12 4906279 4906393 -139376096 + MLT1B-int LTR MaLR 1 115 -1256 * 2294 193 11 11 chr12 4906384 4906856 -139375633 + MLT1B-int LTR MaLR 260 731 -640 279 261 0 0 chr12 4906968 4907033 -139375456 + MLT1B-int LTR MaLR 678 742 -993 294 312 0 0 chr12 4907246 4907323 -139375166 + MLT1B-int LTR MaLR 1286 1362 -373 1386 181 47 4 chr12 4907383 4907659 -139374830 + MLT1B-int LTR MaLR 1372 1659 -76 * 4164 170 38 31 chr12 4907657 4908347 -139374142 - L1MB2 LINE L1 -39 6132 5449 1541 190 34 17 chr12 4908347 4908642 -139373847 - AluJo SINE Alu -11 301 2 4164 170 38 31 chr12 4908642 4909519 -139372970 - L1MB2 LINE L1 -722 5449 4550 936 174 214 86 chr12 4909519 4909870 -139372619 - MSTD LTR MaLR 0 396 1 4164 170 38 31 chr12 4909870 4910040 -139372449 - L1MB2 LINE L1 -1621 4550 4383 2371 94 0 0 chr12 4910051 4910348 -139372141 - AluSg SINE Alu -13 297 1 189 132 0 0 chr12 4910371 4910409 -139372080 + (A)n Simple_repeat Simple_repeat 1 38 0 617 286 59 79 chr12 4911234 4911616 -139370873 - L2 LINE L2 0 3272 2903 932 176 69 5 chr12 4911622 4911810 -139370679 - MER20 DNA MER1_type 0 219 20 282 183 17 0 chr12 4911817 4911877 -139370612 - MER116 DNA Mariner -19 61 1 269 158 35 0 chr12 4912155 4912212 -139370277 + CT-rich Low_complexity Low_complexity 4 62 0 197 182 247 13 chr12 4912478 4912555 -139369934 + MER5B DNA MER1_type 84 178 0 1516 234 133 6 chr12 4913810 4914470 -139368019 + L1MB8 LINE L1 4259 5023 -1123 29993 99 29 59 chr12 4914488 4920832 -139361657 + L1PA7 LINE L1 12 6154 0 3057 211 75 13 chr12 4920873 4921951 -139360538 + L1MB8 LINE L1 5022 6164 -14 1206 302 130 46 chr12 4922063 4922997 -139359492 - L2 LINE L2 -1295 2019 1008 313 255 143 37 chr12 4923951 4924112 -139358377 + L1ME4a LINE L1 5355 5532 -2276 30 45 0 0 chr12 4924118 4924162 -139358327 + AT_rich Low_complexity Low_complexity 1 44 0 554 274 88 9 chr12 4924174 4924492 -139357997 + L1ME4a LINE L1 5545 5887 -234 327 232 203 22 chr12 4924534 4924672 -139357817 + L1ME4a LINE L1 5956 6118 -3 1574 159 4 30 chr12 4925323 4925594 -139356895 + AluJo SINE Alu 1 264 -48 877 167 0 0 chr12 4925599 4925731 -139356758 + FLAM_A SINE Alu 2 133 0 370 218 0 39 chr12 4925923 4926001 -139356488 - L2 LINE L2 0 3313 3239 402 246 55 0 chr12 4926323 4926433 -139356056 + L2 LINE L2 3193 3308 -5 187 282 218 9 chr12 4926431 4926541 -139355948 - L2 LINE L2 -1344 1970 1838 * 748 192 0 0 chr12 4927028 4927153 -139355336 + FLAM_A SINE Alu 2 126 -7 706 286 87 49 chr12 4927922 4928391 -139354098 + L2 LINE L2 1485 1971 -1343 23 0 0 0 chr12 4930069 4930092 -139352397 + AT_rich Low_complexity Low_complexity 1 23 0 187 343 45 0 chr12 4930447 4930514 -139351975 + MIR SINE MIR 69 138 -70 521 254 60 38 chr12 4930659 4930737 -139351752 + MER5A DNA MER1_type 1 76 -113 1767 164 20 13 chr12 4930737 4931036 -139351453 + AluJo SINE Alu 1 301 -11 521 254 60 38 chr12 4931036 4931142 -139351347 + MER5A DNA MER1_type 76 189 0 489 315 6 6 chr12 4931147 4931309 -139351180 + MER5A DNA MER1_type 25 186 -3 1061 167 68 4 chr12 4931522 4931756 -139350733 - L1MA4 LINE L1 -9 6291 6043 5547 45 6 0 chr12 4931838 4932477 -139350012 - SVA Other Other 0 1386 744 1847 121 0 24 chr12 4932961 4933276 -139349213 + AluSg SINE Alu 1 308 0 818 249 58 29 chr12 4933573 4933814 -139348675 + MIR SINE MIR 14 261 -1 241 313 125 18 chr12 4933901 4934013 -139348476 - MIR SINE MIR -115 147 24 1291 179 67 82 chr12 4934368 4934686 -139347803 - MER67C LTR ERV1 -234 280 67 2405 155 47 0 chr12 4934686 4935092 -139347397 + MSTA LTR MaLR 1 425 -3 1291 179 67 82 chr12 4935092 4935156 -139347333 - MER67C LTR ERV1 -447 67 3 793 107 25 0 chr12 4935349 4935470 -139347019 - MSTB1 LTR MaLR 0 432 309 995 88 0 0 chr12 4935541 4935666 -139346823 + AluJb SINE Alu 1 125 -187 273 234 182 0 chr12 4935689 4935766 -139346723 + L2 LINE L2 3221 3311 -2 928 175 200 66 chr12 4936541 4936906 -139345583 + LTR37A LTR ERV1 12 425 -1 504 260 49 29 chr12 4936937 4937141 -139345348 - Charlie8 DNA MER1_type -2194 223 16 241 273 265 0 chr12 4937204 4937336 -139345153 - MIR SINE MIR -48 214 48 1301 146 106 17 chr12 4937580 4937881 -139344608 - LTR56 LTR ERV1 -117 328 1 2375 86 3 3 chr12 4937993 4938296 -139344193 + AluSp SINE Alu 1 303 -10 207 315 63 45 chr12 4938452 4938563 -139343926 - MIR SINE MIR -142 120 8 2241 146 3 11 chr12 4939263 4939632 -139342857 - MER47A DNA MER2_type 0 366 1 413 270 117 0 chr12 4939812 4939975 -139342514 - L1ME LINE L1 -404 5717 5536 3697 187 71 35 chr12 4940246 4940292 -139342197 - MER21B LTR ERV1 -32 831 788 441 0 0 0 chr12 4940292 4940341 -139342148 + (TG)n Simple_repeat Simple_repeat 2 50 0 3697 187 71 35 chr12 4940341 4940743 -139341746 - MER21B LTR ERV1 -75 788 402 2912 108 35 15 chr12 4940743 4940766 -139341723 + MER4C LTR ERV1 1 22 -443 2443 87 0 3 chr12 4940766 4941077 -139341412 + AluY SINE Alu 1 310 -1 2912 108 35 15 chr12 4941077 4941508 -139340981 + MER4C LTR ERV1 22 464 -1 3697 187 71 35 chr12 4941508 4941768 -139340721 - MER21B LTR ERV1 -461 402 87 1598 161 113 0 chr12 4941768 4942042 -139340447 + AluJb SINE Alu 2 306 -6 3697 187 71 35 chr12 4942042 4942133 -139340356 - MER21B LTR ERV1 -776 87 1 1025 258 16 12 chr12 4942444 4942700 -139339789 + MIR SINE MIR 6 262 0 445 319 126 40 chr12 4942981 4943749 -139338740 - L2 LINE L2 -5 3267 2365 666 0 0 0 chr12 4944667 4944741 -139337748 + (CCA)n Simple_repeat Simple_repeat 2 75 0 246 229 0 0 chr12 4945126 4945187 -139337302 - L1ME LINE L1 -520 5644 5584 * 377 226 105 0 chr12 4945182 4945246 -139337243 - L1ME LINE L1 -3485 2661 2605 2538 192 79 29 chr12 4945246 4945840 -139336649 + MLT1E2 LTR MaLR 1 624 -2 377 226 105 0 chr12 4945840 4945956 -139336533 - L1ME LINE L1 -3541 2605 2462 889 159 0 14 chr12 4945998 4946143 -139336346 - FLAM_C SINE Alu 0 143 1 2209 154 130 0 chr12 4946144 4946559 -139335930 - LTR44 LTR ERV1 -26 493 25 2316 85 7 0 chr12 4946561 4946854 -139335635 + AluSg SINE Alu 1 295 -15 614 202 8 83 chr12 4946896 4947148 -139335341 - L1ME LINE L1 -3680 2466 2234 1004 133 0 0 chr12 4947148 4947298 -139335191 + L1PA15 LINE L1 6013 6162 -3 470 184 0 0 chr12 4947366 4947453 -139335036 - MER58B DNA MER1_type 0 341 255 2470 156 128 32 chr12 4947507 4947576 -139334913 + L1MCa LINE L1 29 90 -6336 2432 75 0 3 chr12 4947576 4947884 -139334605 + AluSg SINE Alu 1 307 -3 2470 156 128 32 chr12 4947884 4948367 -139334122 + L1MCa LINE L1 90 634 -5792 4229 150 27 16 chr12 4948386 4949249 -139333240 + L1MCa LINE L1 834 1794 -4632 6669 219 31 77 chr12 4949260 4951148 -139331341 + L1MCa LINE L1 2684 4657 -1769 1355 35 0 99 chr12 4951148 4951350 -139331139 + L1PA3 LINE L1 5974 6155 0 6669 219 31 77 chr12 4951350 4951905 -139330584 + L1MCa LINE L1 4657 5010 -1416 2212 122 0 19 chr12 4951905 4952217 -139330272 - AluSx SINE Alu -6 306 1 6669 219 31 77 chr12 4952217 4952304 -139330185 + L1MCa LINE L1 5010 5099 -1327 198 103 0 0 chr12 4952649 4952678 -139329811 + (CAA)n Simple_repeat Simple_repeat 2 30 0 394 349 42 12 chr12 4953330 4953496 -139328993 + MIR SINE MIR 86 256 -6 536 190 132 25 chr12 4953615 4953736 -139328753 - FLAM_A SINE Alu -8 134 1 237 267 20 30 chr12 4954435 4954536 -139327953 - L1ME4a LINE L1 -55 6066 5967 559 216 0 16 chr12 4954617 4954742 -139327747 - L1MD3 LINE L1 -1112 6883 6761 381 75 0 0 chr12 4955789 4955842 -139326647 + (TG)n Simple_repeat Simple_repeat 2 54 0 1466 185 24 31 chr12 4955842 4956129 -139326360 - AluJb SINE Alu -27 285 1 407 274 213 5 chr12 4956170 4956367 -139326122 - MIR SINE MIR -5 257 20 242 296 0 20 chr12 4956443 4956541 -139325948 - L1ME4a LINE L1 -335 5786 5691 729 197 0 0 chr12 4956622 4956739 -139325750 + AluJo/FLAM SINE Alu 2 118 -194 2196 124 0 0 chr12 4956739 4957045 -139325444 - AluY SINE Alu -5 306 1 27 0 0 0 chr12 4957050 4957077 -139325412 + AT_rich Low_complexity Low_complexity 1 27 0 207 100 0 0 chr12 4957133 4957163 -139325326 + (CA)n Simple_repeat Simple_repeat 2 31 0 321 317 46 42 chr12 4957307 4957478 -139325011 + MER5A DNA MER1_type 20 178 0 23 0 0 0 chr12 4957679 4957702 -139324787 + AT_rich Low_complexity Low_complexity 1 23 0 364 183 37 90 chr12 4957913 4958051 -139324438 - L1MC4 LINE L1 -1 8037 7685 357 150 1 68 chr12 4958177 4958324 -139324165 - L1MD2 LINE L1 -97 7711 6055 * 6903 174 139 98 chr12 4958322 4959039 -139323450 - L1MDa LINE L1 -4204 2336 1650 2162 112 6 34 chr12 4959039 4959361 -139323128 - AluSq SINE Alu 0 313 1 6903 174 139 98 chr12 4959361 4959836 -139322653 - L1MDa LINE L1 -4890 1650 1196 2004 143 0 7 chr12 4959836 4960130 -139322359 - AluJb SINE Alu -15 297 6 6903 174 139 98 chr12 4960130 4960151 -139322338 - L1MDa LINE L1 -5344 1196 1177 841 121 0 38 chr12 4960151 4960283 -139322206 - FLAM_C SINE Alu -16 127 1 6903 174 139 98 chr12 4960283 4961178 -139321311 - L1MDa LINE L1 -5363 1177 3 2299 95 0 6 chr12 4961180 4961495 -139320994 - AluSq SINE Alu 0 313 1 4750 29 41 39 chr12 4962546 4963132 -139319357 - LTR14C LTR ERVK 0 587 1 7785 75 2 3 chr12 4963769 4964738 -139317751 - LTR5 LTR ERVK 0 969 2 421 198 51 108 chr12 4964834 4964991 -139317498 + MIR SINE MIR 28 175 -87 347 292 7 52 chr12 4965352 4965572 -139316917 + GA-rich Low_complexity Low_complexity 1 209 0 2649 46 3 0 chr12 4966407 4966714 -139315775 + AluY SINE Alu 1 308 -3 340 239 11 45 chr12 4967400 4967488 -139315001 + MER91 DNA MER1_type 57 141 -55 237 350 0 0 chr12 4967548 4967608 -139314881 + MER91 DNA MER1_type 131 190 0 357 293 53 23 chr12 4967946 4968079 -139314410 - MER5A DNA MER1_type 0 189 53 * 403 253 53 11 chr12 4967991 4968086 -139314403 + MER5A DNA MER1_type 56 154 -35 2616 63 0 0 chr12 4968089 4968392 -139314097 - AluSg SINE Alu -7 303 1 276 336 16 33 chr12 4968649 4968771 -139313718 - MER5A DNA MER1_type -68 121 2 271 82 131 49 chr12 4969652 4969713 -139312776 - MIR SINE MIR -66 142 77 195 252 35 78 chr12 4969713 4969767 -139312722 + L2 LINE L2 1396 1505 -1809 4680 191 28 27 chr12 4969874 4971699 -139310790 - L1MB8 LINE L1 0 6178 4351 * 8180 167 51 15 chr12 4971685 4973394 -139309095 - L1MA6 LINE L1 0 6300 4478 2124 54 104 4 chr12 4973394 4973674 -139308815 - AluY SINE Alu -3 308 1 8180 167 51 15 chr12 4973674 4974389 -139308100 - L1MA6 LINE L1 -1822 4478 3790 822 238 29 0 chr12 4974423 4974595 -139307894 - MER45A DNA AcHobo 0 178 2 441 152 0 0 chr12 4974950 4975016 -139307473 - MER3 DNA MER1_type 0 209 144 441 152 0 0 chr12 4975119 4975185 -139307304 - MER3 DNA MER1_type 0 209 144 415 182 0 0 chr12 4975288 4975354 -139307135 - MER3 DNA MER1_type 0 209 144 415 182 0 0 chr12 4975457 4975523 -139306966 - MER3 DNA MER1_type 0 209 144 1017 218 35 0 chr12 4975626 4975828 -139306661 - MER3 DNA MER1_type 0 209 1 461 327 82 14 chr12 4976302 4976522 -139305967 + L2 LINE L2 2181 2415 -899 192 328 16 0 chr12 4976613 4976677 -139305812 - MIR SINE MIR -47 215 151 205 179 0 0 chr12 4976678 4976717 -139305772 + (CTA)n Simple_repeat Simple_repeat 1 39 0 357 259 191 38 chr12 4976859 4976990 -139305499 + MER5A DNA MER1_type 33 183 -6 307 363 8 0 chr12 4977134 4977258 -139305231 + L2 LINE L2 2624 2748 -566 2571 266 35 65 chr12 4977687 4978696 -139303793 + L1M4b LINE L1 12 1214 -5645 254 255 0 0 chr12 4978867 4978914 -139303575 + L1M4 LINE L1 915 961 -5894 * 260 229 0 0 chr12 4978888 4978936 -139303553 + L1M4 LINE L1 1177 1224 -5635 224 119 0 24 chr12 4979108 4979150 -139303339 + (GAAAA)n Simple_repeat Simple_repeat 2 42 0 1495 235 35 47 chr12 4979163 4979627 -139302862 + L1M4 LINE L1 1217 1674 -5185 3159 154 65 28 chr12 4979627 4980148 -139302341 + L1MCa LINE L1 20 565 -5861 1478 209 72 49 chr12 4980148 4980535 -139301954 + MSTD LTR MaLR 1 396 0 3159 154 65 28 chr12 4980535 4980583 -139301906 + L1MCa LINE L1 565 610 -5816 228 214 0 0 chr12 4980588 4980630 -139301859 + L1MCa LINE L1 570 611 -5815 1964 179 71 15 chr12 4980660 4981125 -139301364 + L1M4 LINE L1 4840 5330 -816 339 183 84 0 chr12 4981132 4981203 -139301286 + L1MA10 LINE L1 6180 6256 -78 206 316 0 0 chr12 4981235 4981292 -139301197 + MIR SINE MIR 201 257 -5 24 32 0 0 chr12 4981658 4981689 -139300800 + AT_rich Low_complexity Low_complexity 1 31 0 324 345 70 6 chr12 4981999 4982170 -139300319 - MIR SINE MIR -49 213 32 2286 102 0 10 chr12 4982191 4982505 -139299984 - AluY SINE Alu 0 311 1 381 320 85 25 chr12 4982738 4982938 -139299551 + MIR SINE MIR 14 225 -37 * 785 237 14 50 chr12 4982936 4982963 -139299526 - MIR SINE MIR -44 218 192 2158 134 0 0 chr12 4982963 4983262 -139299227 - AluSq SINE Alu -14 299 1 785 237 14 50 chr12 4983262 4983453 -139299036 - MIR SINE MIR -70 192 8 303 311 67 15 chr12 4983544 4983679 -139298810 + L3b LINE CR1 1319 1460 -123 220 333 31 10 chr12 4983994 4984090 -139298399 + MIR3 SINE MIR 62 159 -49 551 253 40 13 chr12 4984550 4984700 -139297789 + MIR SINE MIR 72 225 -37 209 266 62 0 chr12 4984957 4985021 -139297468 - L2 LINE L2 -1 3312 3245 676 153 53 46 chr12 4985554 4985685 -139296804 - AluJo SINE Alu -176 136 5 695 229 21 21 chr12 4986129 4986317 -139296172 + MIR SINE MIR 10 197 -65 246 114 0 0 chr12 4986774 4986809 -139295680 + MIR SINE MIR 204 238 -24 410 314 43 22 chr12 4987399 4987584 -139294905 + MIR3 SINE MIR 10 198 -10 192 397 0 0 chr12 4988532 4988610 -139293879 - L2 LINE L2 -197 3075 2998 919 148 0 15 chr12 4989315 4989450 -139293039 + FLAM_C SINE Alu 1 133 0 7565 201 36 12 chr12 4989612 4992717 -139289772 - L1MA2 LINE L1 0 7723 4540 5070 86 32 10 chr12 4992717 4993401 -139289088 - L1PA13 LINE L1 0 6163 5465 2599 147 2 0 chr12 4993401 4993823 -139288666 + L1P LINE L1 4726 5148 -998 * 20544 155 49 18 chr12 4993819 4998217 -139284272 - L1MA2 LINE L1 -3012 4553 19 240 295 121 27 chr12 4998346 4998626 -139283863 - MLT1I LTR MaLR -33 376 103 183 320 100 30 chr12 4998830 4998930 -139283559 + MIR SINE MIR 13 119 -143 221 288 34 0 chr12 4998934 4998993 -139283496 + L2 LINE L2 3238 3298 -15 2051 145 32 42 chr12 4999400 4999779 -139282710 + THE1C LTR MaLR 1 375 0 886 258 31 16 chr12 4999925 5000276 -139282213 - MLT1J LTR MaLR -31 480 77 183 286 0 0 chr12 5000927 5000969 -139281520 - L2 LINE L2 -16 3256 3215 314 219 16 0 chr12 5000982 5001046 -139281443 + MIR SINE MIR 43 107 -155 288 0 0 0 chr12 5001145 5001177 -139281312 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 360 0 0 0 chr12 5001176 5001216 -139281273 + (GA)n Simple_repeat Simple_repeat 1 40 0 2295 107 3 0 chr12 5001315 5001614 -139280875 - AluSx SINE Alu -12 300 1 228 291 18 18 chr12 5002030 5002085 -139280404 - MIR SINE MIR -188 74 20 2569 192 92 31 chr12 5002552 5003108 -139279381 - MLT1E LTR MaLR -3 590 1 646 233 70 57 chr12 5003832 5004060 -139278429 - MIR SINE MIR -30 232 2 487 157 209 52 chr12 5004147 5004262 -139278227 - FLAM_C SINE Alu 0 133 1 2990 123 14 2 chr12 5005314 5005743 -139276746 - MER57B LTR ERV1 0 434 1 2339 72 0 28 chr12 5007070 5007390 -139275099 - AluY SINE Alu 0 311 1 239 272 58 29 chr12 5007488 5007591 -139274898 - MIR SINE MIR -64 144 39 216 0 0 0 chr12 5007891 5007915 -139274574 + (T)n Simple_repeat Simple_repeat 1 24 0 326 143 54 0 chr12 5008098 5008195 -139274294 - AluSg SINE Alu 0 322 223 1526 115 34 26 chr12 5008374 5008608 -139273881 - AluSg SINE Alu -73 237 2 554 327 12 0 chr12 5008836 5009001 -139273488 + MIR SINE MIR 95 261 -1 476 282 107 43 chr12 5009047 5009327 -139273162 + L3 LINE CR1 799 1096 -481 619 334 87 48 chr12 5009524 5009940 -139272549 + L2 LINE L2 2840 3271 -1 444 305 17 77 chr12 5010006 5010239 -139272250 + L3 LINE CR1 1267 1485 -92 221 329 13 0 chr12 5010368 5010447 -139272042 + MIR SINE MIR 183 262 0 25 0 0 0 chr12 5010526 5010551 -139271938 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr12 5010903 5010931 -139271558 + AT_rich Low_complexity Low_complexity 1 28 0 387 276 85 92 chr12 5011787 5012221 -139270268 + L1ME4a LINE L1 5501 5931 -190 36 40 0 0 chr12 5012225 5012275 -139270214 + AT_rich Low_complexity Low_complexity 1 50 0 2172 112 0 10 chr12 5012555 5012869 -139269620 + AluSx SINE Alu 1 311 -1 477 333 67 28 chr12 5013075 5013255 -139269234 - MIR SINE MIR -5 257 71 341 321 28 0 chr12 5014354 5014460 -139268029 - MIR SINE MIR -128 134 26 2780 212 107 26 chr12 5016528 5017407 -139265082 + L1MC4a LINE L1 5329 5535 -643 1017 205 107 29 chr12 5017423 5017667 -139264822 + L1MC4 LINE L1 6754 7016 -1026 * 2340 173 60 24 chr12 5017665 5018163 -139264326 + L1MC4 LINE L1 7355 7870 -172 193 206 14 14 chr12 5018172 5018245 -139264244 + (TGGA)n Simple_repeat Simple_repeat 4 76 0 489 193 57 36 chr12 5018256 5018396 -139264093 + L1MC4 LINE L1 7900 8042 0 3442 219 28 28 chr12 5020357 5021179 -139261310 - MER99 DNA DNA -5 823 2 465 283 85 40 chr12 5024716 5024939 -139257550 - L1ME4a LINE L1 0 6121 5889 2270 77 0 7 chr12 5024939 5025236 -139257253 - AluY SINE Alu -16 295 1 1493 146 49 42 chr12 5025236 5025523 -139256966 - AluJo SINE Alu -7 305 17 511 308 73 13 chr12 5025918 5026126 -139256363 - MIR SINE MIR -1 261 43 925 137 0 0 chr12 5026216 5026347 -139256142 + FLAM_C SINE Alu 2 132 -1 1045 191 5 19 chr12 5026423 5026638 -139255851 - MER51C LTR ERV1 0 640 429 21 57 0 0 chr12 5026939 5026974 -139255515 + AT_rich Low_complexity Low_complexity 1 35 0 199 290 140 21 chr12 5027588 5027681 -139254808 + L2 LINE L2 3167 3270 -2 784 215 91 94 chr12 5027714 5028086 -139254403 - MLT1D LTR MaLR -134 371 1 254 296 231 22 chr12 5028146 5028467 -139254022 - L2 LINE L2 -16 3256 2869 188 317 58 8 chr12 5028508 5028628 -139253861 - L2 LINE L2 -467 2847 2722 505 267 27 20 chr12 5029036 5029182 -139253307 + MIR SINE MIR 1 147 -115 1377 266 58 28 chr12 5029182 5029611 -139252878 - MLT1J2 LTR MaLR 0 450 9 186 324 40 14 chr12 5029633 5029707 -139252782 + MIR SINE MIR 166 241 -21 224 30 30 0 chr12 5029710 5029743 -139252746 + (TG)n Simple_repeat Simple_repeat 1 34 0 303 309 55 9 chr12 5031338 5031448 -139251041 + MIR SINE MIR 47 161 -101 340 292 32 42 chr12 5031620 5031781 -139250708 + MIR SINE MIR 31 184 -60 2170 106 0 7 chr12 5032112 5032415 -139250074 - AluSx SINE Alu -11 301 1 1634 139 52 14 chr12 5032477 5032855 -139249634 + AluJb SINE Alu 1 389 0 477 230 86 33 chr12 5032915 5033067 -139249422 - L2 LINE L2 -2 3311 3152 4199 179 61 45 chr12 5033067 5033195 -139249294 + L1MB8 LINE L1 4915 5039 -1139 1899 146 0 16 chr12 5033195 5033530 -139248959 + AluSx SINE Alu 1 312 0 4199 179 61 45 chr12 5033530 5034647 -139247842 + L1MB8 LINE L1 5039 6178 0 918 237 158 73 chr12 5034647 5035148 -139247341 - L2 LINE L2 -151 3162 2598 719 261 65 15 chr12 5035148 5035347 -139247142 + MER63A DNA MER1_type 2 210 0 918 237 158 73 chr12 5035347 5035428 -139247061 - L2 LINE L2 -715 2598 2525 472 328 48 11 chr12 5035495 5035684 -139246805 - MER91A DNA MER1_type 0 196 1 211 313 146 28 chr12 5035684 5035821 -139246668 - MIR SINE MIR -84 178 25 233 264 26 0 chr12 5036121 5036203 -139246286 - MIR SINE MIR -81 127 42 260 302 69 35 chr12 5036373 5036489 -139246000 - L2 LINE L2 -1 3271 3152 315 213 0 0 chr12 5037145 5037220 -139245269 + (TG)n Simple_repeat Simple_repeat 2 76 0 293 239 15 0 chr12 5037351 5037418 -139245071 + MIR SINE MIR 48 115 -147 720 229 86 24 chr12 5037424 5037634 -139244855 - MLT1G LTR MaLR -4 586 364 275 152 0 0 chr12 5037666 5037712 -139244777 - MLT2A2 LTR ERVL -2 451 406 3051 104 17 7 chr12 5037748 5038162 -139244327 - MLT2A2 LTR ERVL -35 418 1 502 307 64 0 chr12 5038195 5038335 -139244154 + L2 LINE L2 3123 3271 -1 302 296 157 15 chr12 5039182 5039345 -139243144 - MIR3 SINE MIR -3 205 22 332 119 17 0 chr12 5041160 5041219 -139241270 + CT-rich Low_complexity Low_complexity 1 60 0 293 322 85 0 chr12 5041423 5041541 -139240948 - L2 LINE L2 -2 3270 3143 279 366 85 18 chr12 5041620 5041784 -139240705 + MIR3 SINE MIR 30 204 -4 290 224 104 0 chr12 5042060 5042127 -139240362 - tRNA-Glu-GAG tRNA tRNA 0 75 2 861 145 34 62 chr12 5042250 5042429 -139240060 - AluJo SINE Alu -24 288 115 395 274 42 2 chr12 5042430 5042601 -139239888 + MIR SINE MIR 45 260 -2 1024 287 87 21 chr12 5043009 5043389 -139239100 - MLT1I LTR MaLR -2 407 3 2055 118 10 0 chr12 5045021 5045317 -139237172 - AluSc SINE Alu -10 299 1 1114 289 27 27 chr12 5045359 5045764 -139236725 - MLT1I LTR MaLR -4 405 1 288 0 0 0 chr12 5046342 5046374 -139236115 + (TG)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr12 5046970 5046994 -139235495 + (CA)n Simple_repeat Simple_repeat 1 24 0 1436 301 101 48 chr12 5047277 5048193 -139234296 + L2 LINE L2 2014 3014 -299 2008 125 0 0 chr12 5048193 5048480 -139234009 - AluSx SINE Alu -25 287 1 1436 301 101 48 chr12 5048480 5048797 -139233692 + L2 LINE L2 3014 3313 0 493 235 61 0 chr12 5049953 5050085 -139232404 + LTR43 LTR ERV1 169 308 -294 274 211 35 0 chr12 5050962 5051019 -139231470 + MIR SINE MIR 204 262 0 24 0 0 0 chr12 5055660 5055684 -139226805 + AT_rich Low_complexity Low_complexity 1 24 0 278 242 68 83 chr12 5055752 5055884 -139226605 + MIR SINE MIR 42 171 -91 258 373 12 6 chr12 5057561 5057722 -139224767 + CT-rich Low_complexity Low_complexity 1 162 0 250 254 120 74 chr12 5058070 5058287 -139224202 + L3b LINE CR1 1115 1341 -242 247 239 0 57 chr12 5058486 5058574 -139223915 + L1MB8 LINE L1 6035 6117 -61 480 18 0 0 chr12 5058788 5058845 -139223644 + (TG)n Simple_repeat Simple_repeat 1 57 0 23 54 0 0 chr12 5059173 5059210 -139223279 + AT_rich Low_complexity Low_complexity 1 37 0 874 223 52 24 chr12 5060853 5061064 -139221425 + MIR SINE MIR 7 223 -39 259 253 40 61 chr12 5061093 5061192 -139221297 - MIR SINE MIR -95 167 71 323 211 42 0 chr12 5061393 5061464 -139221025 - L1MCa LINE L1 -4358 2068 1995 300 304 0 0 chr12 5061464 5061625 -139220864 + (CA)n Simple_repeat Simple_repeat 2 162 0 393 256 185 6 chr12 5062311 5062470 -139220019 + MIR SINE MIR 34 214 -48 493 257 35 0 chr12 5062929 5063042 -139219447 - MIR SINE MIR -62 146 30 414 0 0 0 chr12 5063085 5063131 -139219358 + (CA)n Simple_repeat Simple_repeat 2 47 0 387 0 0 0 chr12 5063957 5064000 -139218489 + (TG)n Simple_repeat Simple_repeat 2 44 0 363 247 67 62 chr12 5064161 5064339 -139218150 + Charlie8 DNA MER1_type 98 276 -2141 2234 105 10 3 chr12 5064378 5064673 -139217816 - AluSq SINE Alu -16 297 1 2173 139 0 0 chr12 5066023 5066333 -139216156 + AluSx SINE Alu 1 310 -2 460 270 82 41 chr12 5066551 5066747 -139215742 + MIR SINE MIR 59 262 0 450 303 56 26 chr12 5067556 5067751 -139214738 - L3b LINE CR1 -118 1465 1265 457 170 28 28 chr12 5067846 5067952 -139214537 - MER103 DNA DNA -47 119 14 217 0 61 0 chr12 5068759 5068792 -139213697 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 266 277 79 20 chr12 5069036 5069137 -139213352 + MIR SINE MIR 18 124 -84 1006 169 13 9 chr12 5069511 5069830 -139212659 + CT-rich Low_complexity Low_complexity 1 320 0 187 256 0 0 chr12 5070441 5070480 -139212009 + MIR SINE MIR 70 108 -100 409 263 39 28 chr12 5070489 5070668 -139211821 - L1ME4a LINE L1 0 6121 5941 306 248 177 9 chr12 5070925 5071038 -139211451 - L1ME4a LINE L1 -355 5766 5635 598 242 223 14 chr12 5071129 5071340 -139211149 - MIR SINE MIR -1 261 7 331 253 58 11 chr12 5071973 5072060 -139210429 - MER5A DNA MER1_type -43 146 56 279 306 33 87 chr12 5072109 5072292 -139210197 - MER5B DNA MER1_type -1 177 5 328 348 27 71 chr12 5074078 5074262 -139208227 - MIR3 SINE MIR -24 184 9 396 329 86 7 chr12 5074348 5074500 -139207989 + MIR SINE MIR 21 184 -78 247 261 22 11 chr12 5075593 5075675 -139206814 - MLT1L LTR MaLR -46 569 487 866 229 238 52 chr12 5075675 5076138 -139206351 - MLT1H LTR MaLR 0 549 1 341 215 13 13 chr12 5076184 5076263 -139206226 - MLT1L LTR MaLR -215 400 322 270 116 0 0 chr12 5076418 5076461 -139206028 + (TTC)n Simple_repeat Simple_repeat 2 44 0 1918 148 3 23 chr12 5076470 5076773 -139205716 - AluJo SINE Alu -15 297 1 233 270 10 40 chr12 5076774 5076874 -139205615 - MLT1L LTR MaLR -502 113 17 3139 133 25 55 chr12 5077635 5077673 -139204816 + LTR36 LTR ERV1 4 42 -569 2606 53 0 0 chr12 5077673 5077972 -139204517 - AluY SINE Alu -12 299 1 3139 133 25 55 chr12 5077972 5078473 -139204016 + LTR36 LTR ERV1 42 526 -85 2264 96 10 32 chr12 5078473 5078787 -139203702 - AluSq SINE Alu -6 307 1 3139 133 25 55 chr12 5078787 5078846 -139203643 + LTR36 LTR ERV1 526 585 -26 225 378 108 14 chr12 5078934 5079156 -139203333 - L2 LINE L2 -206 3066 2824 534 178 43 98 chr12 5079389 5079428 -139203061 - MER97c DNA MER1_type? -912 178 138 4293 168 102 9 chr12 5079428 5080214 -139202275 + MER21B LTR ERV1 2 860 -3 534 178 43 98 chr12 5080214 5080337 -139202152 - MER97c DNA MER1_type? -952 138 25 1383 203 43 48 chr12 5081161 5081535 -139200954 - MLT1B LTR MaLR -18 372 1 2637 141 16 21 chr12 5081717 5082150 -139200339 + Tigger2a DNA MER2_type 2 432 -2 206 253 76 38 chr12 5082322 5082401 -139200088 - MIR SINE MIR -62 200 119 441 0 0 0 chr12 5082734 5082783 -139199706 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 1161 91 6 0 chr12 5082836 5083012 -139199477 + L1P4 LINE L1 5305 5481 -684 299 267 206 34 chr12 5083703 5083849 -139198640 + Tigger8 DNA MER2_type 70 240 -426 23 33 0 0 chr12 5083852 5083882 -139198607 + AT_rich Low_complexity Low_complexity 1 30 0 863 256 135 21 chr12 5083911 5084290 -139198199 + Tigger8 DNA MER2_type 244 665 -1 343 353 101 58 chr12 5084457 5084551 -139197938 - L2 LINE L2 -9 3263 3174 450 0 0 0 chr12 5084551 5084601 -139197888 + (TG)n Simple_repeat Simple_repeat 2 51 0 343 353 101 58 chr12 5084601 5084903 -139197586 - L2 LINE L2 -98 3174 2850 1963 139 144 11 chr12 5084980 5085348 -139197141 - MSTA LTR MaLR -11 417 1 390 323 85 11 chr12 5085351 5085611 -139196878 - L2 LINE L2 -586 2728 2450 2642 50 0 0 chr12 5085716 5086018 -139196471 - AluY SINE Alu -9 302 1 522 214 14 77 chr12 5086026 5086084 -139196405 - HAL1 LINE L1 -1 2506 2446 2529 144 34 2 chr12 5086084 5086495 -139195994 - MSTA LTR MaLR -4 424 1 522 214 14 77 chr12 5086495 5086656 -139195833 - HAL1 LINE L1 -61 2446 2301 1005 254 55 89 chr12 5086666 5087244 -139195245 - L2 LINE L2 -20 3293 2754 1317 260 105 42 chr12 5087298 5088005 -139194484 - HAL1 LINE L1 -330 2177 1427 473 199 180 19 chr12 5088065 5088226 -139194263 - MER53 DNA DNA -1 188 2 1117 249 64 82 chr12 5088320 5088466 -139194023 - HAL1 LINE L1 -36 2471 2324 1588 137 116 15 chr12 5088466 5088794 -139193695 - MER46B DNA MER2_type 0 236 1 1117 249 64 82 chr12 5088794 5089304 -139193185 - HAL1 LINE L1 -183 2324 1826 2457 75 0 25 chr12 5089304 5089622 -139192867 - AluY SINE Alu -1 310 1 1117 249 64 82 chr12 5089622 5089671 -139192818 - HAL1 LINE L1 -681 1826 1778 2435 262 107 39 chr12 5089770 5091057 -139191432 - HAL1 LINE L1 -1091 1416 42 1678 85 9 0 chr12 5091084 5091296 -139191193 - AluSp SINE Alu -24 289 76 2076 69 11 25 chr12 5091381 5091697 -139190792 + AluSc SINE Alu 10 321 0 249 83 0 0 chr12 5092019 5092055 -139190434 + (T)n Simple_repeat Simple_repeat 1 36 0 247 246 14 29 chr12 5094370 5094439 -139188050 + L2 LINE L2 3205 3272 0 1061 219 113 124 chr12 5094730 5095675 -139186814 - L2 LINE L2 -1 3312 2405 448 361 21 0 chr12 5096787 5096978 -139185511 + MIR3 SINE MIR 5 199 -9 235 346 40 0 chr12 5097188 5097289 -139185200 + MIR SINE MIR 157 261 -1 233 309 25 0 chr12 5098909 5098990 -139183499 + MIR3 SINE MIR 100 182 -26 2215 80 49 0 chr12 5099662 5099948 -139182541 - AluSp SINE Alu -13 300 1 872 211 33 11 chr12 5100000 5100180 -139182309 - MER5A DNA MER1_type -5 184 1 435 38 0 0 chr12 5101754 5101807 -139180682 + (TG)n Simple_repeat Simple_repeat 1 53 0 222 282 42 28 chr12 5103888 5104030 -139178459 + L2 LINE L2 51 194 -3120 455 282 114 44 chr12 5104038 5104311 -139178178 + L2 LINE L2 3021 3312 -1 600 274 37 6 chr12 5104466 5104630 -139177859 - MIR3 SINE MIR -7 201 33 1294 130 0 0 chr12 5104687 5104864 -139177625 + FRAM SINE Alu 1 172 -4 223 189 38 0 chr12 5106227 5106280 -139176209 + (ATG)n Simple_repeat Simple_repeat 3 57 0 983 284 0 0 chr12 5106294 5106519 -139175970 - MIR SINE MIR -10 252 28 765 213 66 35 chr12 5107102 5107299 -139175190 + MER63A DNA MER1_type 1 203 -7 200 219 0 0 chr12 5107732 5107773 -139174716 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 1530 138 0 127 chr12 5108106 5108446 -139174043 - AluJb SINE Alu -15 297 1 479 153 92 0 chr12 5108608 5108706 -139173783 - MIR SINE MIR -96 166 60 3341 157 40 27 chr12 5109442 5110067 -139172422 - L1PA16 LINE L1 -13 6153 5521 964 249 128 41 chr12 5110431 5110845 -139171644 - MLT1J2 LTR MaLR 0 450 1 577 259 15 0 chr12 5111419 5111550 -139170939 - MER94 DNA DNA 0 134 2 23 0 0 0 chr12 5112079 5112102 -139170387 + AT_rich Low_complexity Low_complexity 1 23 0 180 289 0 19 chr12 5112700 5112752 -139169737 - MIR3 SINE MIR -3 205 155 2638 174 131 13 chr12 5112832 5113373 -139169116 - MER6A DNA MER2_type 0 605 1 416 304 81 14 chr12 5114585 5114930 -139167559 + L1M4 LINE L1 2253 2620 -3526 1191 284 130 40 chr12 5115302 5116031 -139166458 + L1M4 LINE L1 3022 3684 -2462 2096 39 75 4 chr12 5116031 5116286 -139166203 - AluY SINE Alu -15 296 24 1191 284 130 40 chr12 5116286 5116600 -139165889 + L1M4 LINE L1 3684 3968 -2178 829 92 8 8 chr12 5116600 5116730 -139165759 + (GAAA)n Simple_repeat Simple_repeat 2 131 0 1191 284 130 40 chr12 5116730 5116916 -139165573 + L1M4 LINE L1 3968 4363 -1783 188 323 99 20 chr12 5118148 5118349 -139164140 - L3b LINE CR1 -25 1558 1342 271 330 32 37 chr12 5118498 5118686 -139163803 + L3 LINE CR1 1056 1242 -335 243 261 118 59 chr12 5119395 5119514 -139162975 + L2 LINE L2 3146 3271 -1 2611 206 17 11 chr12 5119791 5120330 -139162159 + MER74A LTR ERVL 1 542 -16 270 255 78 35 chr12 5120806 5120947 -139161542 - MIR SINE MIR -1 261 115 2104 132 30 30 chr12 5120953 5121316 -139161173 - THE1B LTR MaLR -1 363 1 12103 95 2 2 chr12 5121316 5122897 -139159592 - THE1B-int LTR MaLR 0 1580 1 1016 145 14 104 chr12 5122897 5123118 -139159371 - THE1B LTR MaLR 0 364 164 221 248 34 86 chr12 5123447 5123564 -139158925 + MIR SINE MIR 82 192 -70 453 230 57 109 chr12 5124634 5124836 -139157653 - L1MC5 LINE L1 -45 7916 7736 2563 47 0 28 chr12 5124836 5125156 -139157333 - AluY SINE Alu 0 311 1 453 230 57 109 chr12 5125156 5125284 -139157205 - L1MC5 LINE L1 -225 7736 7603 194 327 0 0 chr12 5125404 5125459 -139157030 - L2 LINE L2 -12 3301 3247 276 374 14 14 chr12 5125467 5125606 -139156883 - MIR SINE MIR -117 145 7 309 222 152 10 chr12 5125720 5125819 -139156670 + MIR SINE MIR 32 144 -118 925 264 35 35 chr12 5126265 5126583 -139155906 - L1MA9 LINE L1 -38 6274 5957 1649 163 3 37 chr12 5126805 5127100 -139155389 - AluJo SINE Alu -19 293 9 210 71 0 0 chr12 5127673 5127701 -139154788 + (CGTG)n Simple_repeat Simple_repeat 1 28 0 180 0 0 0 chr12 5127720 5127740 -139154749 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 243 0 0 0 chr12 5127739 5127766 -139154723 + (GA)n Simple_repeat Simple_repeat 2 28 0 218 286 14 0 chr12 5127836 5127906 -139154583 - L3b LINE CR1 -180 1403 1333 255 219 0 16 chr12 5128121 5128185 -139154304 + CT-rich Low_complexity Low_complexity 2 64 0 687 294 107 44 chr12 5128881 5129433 -139153056 + L1MEd LINE L1 529 1126 -4993 2636 39 7 3 chr12 5129433 5129740 -139152749 + AluY SINE Alu 1 308 -3 687 294 107 44 chr12 5129740 5129806 -139152683 + L1MEd LINE L1 1126 1186 -4933 511 238 142 27 chr12 5129807 5130191 -139152298 + L1MEd LINE L1 1242 1635 -4494 * 1508 269 121 37 chr12 5130190 5130872 -139151617 + L1MB3 LINE L1 3139 3762 -2384 1685 182 30 43 chr12 5130872 5131240 -139151249 + MLT1A1 LTR MaLR 1 363 -2 1508 269 121 37 chr12 5131240 5131809 -139150680 + L1MB3 LINE L1 3762 4496 -1650 4288 204 56 38 chr12 5131944 5132481 -139150008 + L1MB3 LINE L1 4732 5258 -925 512 65 0 130 chr12 5132481 5132573 -139149916 + MADE1 DNA Mariner 1 80 0 4288 204 56 38 chr12 5132573 5133476 -139149013 + L1MB3 LINE L1 5258 6183 0 802 289 76 23 chr12 5133468 5133863 -139148626 + L1ME3A LINE L1 5427 5842 -328 * 1914 123 82 21 chr12 5133920 5134260 -139148229 - MER46B DNA MER2_type 0 236 1 26 30 0 0 chr12 5134490 5134523 -139147966 + AT_rich Low_complexity Low_complexity 1 33 0 2390 89 0 0 chr12 5136966 5137259 -139145230 + AluSc SINE Alu 1 293 -16 201 156 0 0 chr12 5137924 5137956 -139144533 + (TATG)n Simple_repeat Simple_repeat 3 34 0 739 229 58 39 chr12 5138488 5138515 -139143974 + MER3 DNA MER1_type 1 26 -183 2472 68 0 3 chr12 5138515 5138811 -139143678 + AluY SINE Alu 1 295 -16 739 229 58 39 chr12 5138811 5138988 -139143501 + MER3 DNA MER1_type 26 209 0 7300 124 48 10 chr12 5139940 5140189 -139142300 - Tigger3b DNA MER2_type -1816 1212 974 1936 148 3 13 chr12 5140189 5140492 -139141997 + AluJb SINE Alu 6 305 -7 7300 124 48 10 chr12 5140492 5141408 -139141081 - Tigger3b DNA MER2_type -2054 974 3 360 311 97 48 chr12 5141555 5142101 -139140388 + L2 LINE L2 1333 1905 -1409 186 231 0 0 chr12 5142183 5142222 -139140267 + L2 LINE L2 2432 2470 -844 585 310 54 71 chr12 5142320 5142801 -139139688 + MLT1K LTR MaLR 109 581 -7 310 325 68 12 chr12 5142890 5143053 -139139436 - MLT1L LTR MaLR -34 581 410 375 342 59 78 chr12 5143372 5143846 -139138643 + L2 LINE L2 2804 3268 -4 993 193 140 8 chr12 5144074 5144317 -139138172 - L1ME1 LINE L1 -6 6229 5955 * 4282 222 107 28 chr12 5144298 5145548 -139136941 - L1ME1 LINE L1 -781 5434 4055 243 0 0 0 chr12 5145548 5145575 -139136914 + (TG)n Simple_repeat Simple_repeat 2 28 0 4282 222 107 28 chr12 5145575 5145753 -139136736 - L1ME1 LINE L1 -2160 4055 3893 810 301 52 19 chr12 5145775 5146084 -139136405 - L1ME1 LINE L1 -5939 457 139 2292 90 0 7 chr12 5146505 5146844 -139135645 + AluY SINE Alu 1 311 0 2136 279 128 26 chr12 5147314 5147439 -139135050 + L2 LINE L2 1216 1327 -1987 2166 138 3 0 chr12 5147439 5147750 -139134739 - AluSx SINE Alu 0 312 1 2136 279 128 26 chr12 5147750 5148550 -139133939 + L2 LINE L2 1327 2263 -1051 889 173 152 11 chr12 5148550 5148741 -139133748 + MER20 DNA MER1_type 2 219 0 2136 279 128 26 chr12 5148741 5148864 -139133625 + L2 LINE L2 2263 2372 -942 267 287 30 48 chr12 5148865 5149032 -139133457 - LTR16C LTR ERVL 0 491 328 766 322 173 8 chr12 5149535 5150300 -139132189 + L2 LINE L2 2407 3313 0 621 219 0 24 chr12 5150350 5150473 -139132016 + FRAM SINE Alu 1 115 -61 276 170 0 0 chr12 5150480 5150533 -139131956 + GA-rich Low_complexity Low_complexity 2 54 0 39 38 0 0 chr12 5150960 5151013 -139131476 + AT_rich Low_complexity Low_complexity 1 53 0 23 33 0 0 chr12 5156569 5156599 -139125890 + AT_rich Low_complexity Low_complexity 1 30 0 251 53 0 26 chr12 5156830 5156868 -139125621 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 192 97 0 0 chr12 5161207 5161238 -139121251 + (CAGAGA)n Simple_repeat Simple_repeat 2 32 0 537 233 54 4 chr12 5162177 5162344 -139120145 - MER104 DNA Tc2 -3 177 1 218 150 50 0 chr12 5162949 5162989 -139119500 + L2 LINE L2 3221 3262 -10 198 217 104 87 chr12 5163040 5163082 -139119407 + MIR SINE MIR 87 127 -135 2100 131 7 0 chr12 5163082 5163379 -139119110 - AluSx SINE Alu -13 299 1 198 217 104 87 chr12 5163379 5163451 -139119038 + MIR SINE MIR 127 203 -59 29 0 0 0 chr12 5164000 5164029 -139118460 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr12 5164115 5164140 -139118349 + AT_rich Low_complexity Low_complexity 1 25 0 1753 196 0 3 chr12 5166809 5167110 -139115379 + AluJb SINE Alu 2 301 -11 244 53 53 26 chr12 5168135 5168173 -139114316 + L1PA4 LINE L1 5837 5875 -279 1995 38 8 0 chr12 5168262 5168501 -139113988 + L1PA4 LINE L1 5915 6155 0 1206 258 81 15 chr12 5168510 5168906 -139113583 - LTR16A LTR ERVL -6 444 23 1718 182 24 0 chr12 5170681 5170978 -139111511 + AluJb SINE Alu 5 308 -4 219 234 0 0 chr12 5172013 5172060 -139110429 - L3 LINE CR1 -1 1576 1530 271 363 20 36 chr12 5174164 5174415 -139108074 - L3 LINE CR1 -834 743 497 849 47 0 0 chr12 5175082 5175188 -139107301 + (TTC)n Simple_repeat Simple_repeat 3 108 0 943 254 65 7 chr12 5175192 5175468 -139107021 - MLT1C LTR MaLR -52 415 124 288 137 0 0 chr12 5175864 5175915 -139106574 + (TGAA)n Simple_repeat Simple_repeat 4 54 0 397 254 25 16 chr12 5176543 5176665 -139105824 + MIR3 SINE MIR 7 129 -79 23 78 0 0 chr12 5177501 5177552 -139104937 + AT_rich Low_complexity Low_complexity 1 51 0 2258 76 7 40 chr12 5178130 5178431 -139104058 - AluSg1 SINE Alu -18 291 1 1255 211 102 5 chr12 5179055 5179434 -139103055 - MER63 DNA MER1_type 0 1060 8 421 290 73 38 chr12 5179871 5180299 -139102190 - L2 LINE L2 -193 3079 2627 2204 109 10 19 chr12 5180361 5180674 -139101815 + AluSg SINE Alu 1 310 0 260 266 137 65 chr12 5181544 5181822 -139100667 + L2 LINE L2 2866 3163 -109 954 276 165 13 chr12 5182408 5182902 -139099587 - L2 LINE L2 -49 3264 2696 613 330 95 46 chr12 5183041 5184079 -139098410 - L2 LINE L2 -1 3271 2170 364 223 161 18 chr12 5184587 5184699 -139097790 - MIR3 SINE MIR -66 142 15 1935 109 12 0 chr12 5185304 5185561 -139096928 + AluSq SINE Alu 1 260 -53 232 320 115 0 chr12 5186352 5186474 -139096015 + MIR SINE MIR 119 254 -8 321 356 65 40 chr12 5187225 5187500 -139094989 + L2 LINE L2 2989 3270 -2 2387 176 170 29 chr12 5187620 5188239 -139094250 - L1MB7 LINE L1 -25 6159 5454 192 40 0 0 chr12 5188285 5188310 -139094179 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr12 5188350 5188372 -139094117 + AT_rich Low_complexity Low_complexity 1 22 0 2201 95 7 0 chr12 5188372 5188655 -139093834 - AluSg SINE Alu -24 286 2 2583 150 31 0 chr12 5188732 5189145 -139093344 - MSTB LTR MaLR 0 426 1 183 143 29 0 chr12 5190436 5190471 -139092018 + MIR3 SINE MIR 124 159 -49 2159 110 3 0 chr12 5190548 5190870 -139091619 + AluSx SINE Alu 1 323 0 362 100 17 0 chr12 5190985 5191045 -139091444 + (TCCCC)n Simple_repeat Simple_repeat 3 63 0 21 36 0 0 chr12 5191317 5191345 -139091144 + AT_rich Low_complexity Low_complexity 1 28 0 41 58 0 0 chr12 5193127 5193196 -139089293 + AT_rich Low_complexity Low_complexity 1 69 0 1041 189 34 5 chr12 5194516 5194722 -139087767 + MER20 DNA MER1_type 8 219 0 372 365 41 15 chr12 5194839 5195179 -139087310 + L3b LINE CR1 1143 1491 -92 340 261 48 11 chr12 5196193 5196358 -139086131 + MIR SINE MIR 12 258 -4 375 23 0 0 chr12 5197112 5197156 -139085333 + (TG)n Simple_repeat Simple_repeat 1 44 0 780 226 32 36 chr12 5199117 5199338 -139083151 - MIR SINE MIR -14 248 29 228 254 0 0 chr12 5200196 5200255 -139082234 + T-rich Low_complexity Low_complexity 1 59 0 209 275 38 25 chr12 5200343 5200423 -139082066 + CT-rich Low_complexity Low_complexity 4 84 0 1749 192 58 6 chr12 5201983 5202327 -139080162 - MLT1A1 LTR MaLR -3 362 1 540 291 23 0 chr12 5202639 5202811 -139079678 - MIR3 SINE MIR -3 205 30 440 218 0 0 chr12 5203436 5203523 -139078966 - LTR33 LTR ERVL -1 520 434 414 261 106 55 chr12 5204174 5204373 -139078116 - MLT1K LTR MaLR -17 571 363 184 318 80 0 chr12 5204772 5204860 -139077629 - L2 LINE L2 -518 2796 2702 736 274 45 0 chr12 5205522 5205723 -139076766 + MIR SINE MIR 16 225 -37 742 303 125 24 chr12 5206630 5207314 -139075175 + L2 LINE L2 2549 3309 -4 371 303 29 67 chr12 5207483 5207647 -139074842 - MIR SINE MIR -65 143 6 527 274 128 0 chr12 5207657 5207821 -139074668 - MIR SINE MIR -70 192 8 407 319 135 5 chr12 5208567 5208752 -139073737 + MIR SINE MIR 42 250 -12 209 146 21 0 chr12 5208758 5208806 -139073683 + (TAA)n Simple_repeat Simple_repeat 3 51 0 189 0 0 0 chr12 5209130 5209151 -139073338 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 299 383 25 41 chr12 5209340 5209536 -139072953 - MIR SINE MIR -50 212 20 419 335 13 13 chr12 5210164 5210316 -139072173 - MER5A DNA MER1_type -3 186 35 265 313 45 37 chr12 5210200 5210334 -139072155 + MER5A DNA MER1_type 50 184 -5 * 399 253 131 19 chr12 5210985 5211145 -139071344 - MIR SINE MIR -58 204 30 348 331 21 35 chr12 5211966 5212111 -139070378 - MIR SINE MIR -71 191 49 369 75 0 0 chr12 5212146 5212199 -139070290 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 240 304 13 38 chr12 5212857 5212936 -139069553 + L2 LINE L2 3191 3267 -5 565 101 13 0 chr12 5213986 5214065 -139068424 + MADE1 DNA Mariner 1 80 0 2480 160 24 12 chr12 5214332 5214756 -139067733 - MSTB1 LTR MaLR 0 432 4 252 149 0 0 chr12 5214852 5214899 -139067590 + (TCCA)n Simple_repeat Simple_repeat 2 48 0 301 274 32 73 chr12 5214899 5215023 -139067466 - L2 LINE L2 0 3313 3195 1380 196 36 0 chr12 5217266 5217567 -139064922 + MER33 DNA MER1_type 5 316 -8 1239 197 16 100 chr12 5218566 5218886 -139063603 - AluJb SINE Alu -8 294 2 250 289 22 11 chr12 5219376 5219466 -139063023 - MIR SINE MIR -107 155 65 484 355 69 43 chr12 5220292 5220544 -139061945 + L2 LINE L2 2959 3224 -89 2463 56 0 0 chr12 5220544 5220850 -139061639 - AluY SINE Alu -5 306 1 484 355 69 43 chr12 5220850 5220943 -139061546 + L2 LINE L2 3224 3313 0 254 209 105 35 chr12 5220938 5221024 -139061465 - L2 LINE L2 -212 3060 2969 * 327 304 99 44 chr12 5222018 5222199 -139060290 - MIR SINE MIR -71 191 1 356 250 0 0 chr12 5222432 5222512 -139059977 - MER116 DNA Mariner 0 80 1 866 289 29 8 chr12 5222865 5223111 -139059378 + MIR SINE MIR 12 262 0 1373 248 47 77 chr12 5223578 5223770 -139058719 - MER77 LTR ERV1 -4 601 405 1798 153 0 7 chr12 5223770 5224064 -139058425 + AluSx SINE Alu 1 292 -20 1373 248 47 77 chr12 5224064 5224395 -139058094 - MER77 LTR ERV1 -200 405 121 226 296 45 11 chr12 5224457 5224545 -139057944 - L2 LINE L2 -43 3229 3139 506 336 68 65 chr12 5225796 5226172 -139056317 - L2 LINE L2 -5 3267 2891 261 333 53 26 chr12 5226172 5226286 -139056203 + MER91C DNA MER1_type 1 117 -23 332 341 24 8 chr12 5226647 5226773 -139055716 - MIR3 SINE MIR -51 157 30 509 253 91 19 chr12 5226855 5227192 -139055297 - MLT1J2 LTR MaLR -8 442 13 221 269 71 14 chr12 5227332 5227438 -139055051 - MIR SINE MIR -66 142 32 520 272 10 57 chr12 5228679 5228882 -139053607 - MIR SINE MIR -8 254 62 1870 141 7 3 chr12 5228882 5229180 -139053309 - AluSg SINE Alu -11 299 1 181 333 0 71 chr12 5229303 5229402 -139053087 - L2 LINE L2 -185 3087 2996 349 233 233 7 chr12 5230441 5230591 -139051898 - MER5A DNA MER1_type 0 189 6 1234 131 60 0 chr12 5231615 5231814 -139050675 + MER20 DNA MER1_type 4 214 -5 260 241 224 35 chr12 5232143 5232259 -139050230 + MIR3 SINE MIR 6 143 -65 264 294 0 0 chr12 5234191 5234361 -139048128 + (CA)n Simple_repeat Simple_repeat 1 170 0 340 333 19 62 chr12 5234798 5234960 -139047529 + MIR SINE MIR 25 179 -83 1368 153 0 5 chr12 5235666 5235888 -139046601 + AluSg/x SINE Alu 84 304 -8 266 231 15 46 chr12 5236451 5236516 -139045973 - L2 LINE L2 -10 3303 3241 2018 119 0 10 chr12 5236795 5237107 -139045382 - AluSc SINE Alu 0 309 1 448 280 161 16 chr12 5237684 5237870 -139044619 + MIR SINE MIR 22 234 -28 307 272 52 29 chr12 5237960 5238096 -139044393 - MIR SINE MIR -14 248 110 187 329 63 0 chr12 5238199 5238278 -139044211 - L2 LINE L2 -78 3194 3111 221 0 35 0 chr12 5238667 5238696 -139043793 + (GA)n Simple_repeat Simple_repeat 1 30 0 197 303 66 0 chr12 5239019 5239095 -139043394 - L2 LINE L2 -78 3194 3114 260 334 138 2 chr12 5239451 5239623 -139042866 + MIR SINE MIR 15 194 -68 215 31 31 0 chr12 5239755 5239787 -139042702 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 264 331 75 6 chr12 5239940 5240100 -139042389 - MER5A DNA MER1_type -18 171 1 1751 105 44 24 chr12 5241281 5241576 -139040913 - L1MA3 LINE L1 0 6305 6005 476 283 36 18 chr12 5241580 5241746 -139040743 + MIR3 SINE MIR 30 198 -10 248 265 44 0 chr12 5243575 5243643 -139038846 - L2 LINE L2 -1 3312 3242 195 299 58 23 chr12 5244874 5244961 -139037528 + MIR SINE MIR 103 192 -70 330 337 66 31 chr12 5245097 5245293 -139037196 + MIR SINE MIR 24 226 -36 399 211 33 11 chr12 5245957 5246047 -139036442 - L2 LINE L2 0 3313 3222 1352 223 15 29 chr12 5246061 5246195 -139036294 + L1MA9 LINE L1 3 137 -6893 5019 28 2 5 chr12 5246195 5246777 -139035712 + L1PA3 LINE L1 5573 6152 -3 1352 223 15 29 chr12 5246777 5246981 -139035508 + L1MA9 LINE L1 137 1369 -5661 980 266 99 20 chr12 5246990 5247392 -139035097 - MER57B LTR ERV1 0 434 1 1883 229 37 18 chr12 5247420 5247932 -139034557 + L1MA9 LINE L1 3162 3683 -3423 * 5171 149 26 92 chr12 5247924 5248378 -139034111 + L1MA9 LINE L1 5660 6142 -1130 2066 117 7 0 chr12 5248378 5248678 -139033811 + AluSq SINE Alu 1 302 -11 5171 149 26 92 chr12 5248678 5248803 -139033686 + L1MA9 LINE L1 6142 6274 -998 1735 172 13 0 chr12 5248803 5249111 -139033378 + AluJb SINE Alu 1 312 0 5171 149 26 92 chr12 5249111 5249410 -139033079 + L1MA9 LINE L1 6274 6591 -681 1664 88 0 0 chr12 5249410 5249626 -139032863 + AluSg/x SINE Alu 89 304 -8 5171 149 26 92 chr12 5249626 5250474 -139032015 + L1MA9 LINE L1 6591 7272 0 269 277 23 35 chr12 5250662 5250779 -139031710 + MIR SINE MIR 16 129 -103 430 256 216 16 chr12 5251010 5251315 -139031174 - MLT1G1 LTR MaLR 0 595 230 324 120 0 0 chr12 5252081 5252131 -139030358 + (TATG)n Simple_repeat Simple_repeat 2 51 0 243 281 22 45 chr12 5253624 5253713 -139028776 - MIR SINE MIR -62 146 60 1247 203 109 14 chr12 5254054 5254330 -139028159 + AluJb SINE Alu 1 302 0 1917 188 30 10 chr12 5255167 5255566 -139026923 - L1MB7 LINE L1 -28 6156 5750 452 18 18 0 chr12 5255815 5255872 -139026617 + (TC)n Simple_repeat Simple_repeat 1 58 0 237 108 0 0 chr12 5256858 5256895 -139025594 + (CA)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr12 5257320 5257342 -139025147 + AT_rich Low_complexity Low_complexity 1 22 0 277 232 0 0 chr12 5257864 5257920 -139024569 + GA-rich Low_complexity Low_complexity 117 172 0 1066 241 38 4 chr12 5258101 5258338 -139024151 + MIR SINE MIR 18 262 0 180 224 60 30 chr12 5260455 5260522 -139021967 - L2 LINE L2 -25 3247 3179 396 343 70 6 chr12 5261933 5262105 -139020384 - L2 LINE L2 -3 3269 3087 241 299 82 3 chr12 5262223 5262371 -139020118 - MIR SINE MIR -24 238 37 337 259 69 73 chr12 5262653 5262942 -139019547 + L2 LINE L2 2812 3099 -173 368 273 29 36 chr12 5262965 5263104 -139019385 - MER63A DNA MER1_type -4 206 69 209 356 67 22 chr12 5263178 5263313 -139019176 + L2 LINE L2 3111 3251 -21 256 308 15 90 chr12 5263462 5263595 -139018894 + L2 LINE L2 3191 3313 0 207 383 47 0 chr12 5263884 5263991 -139018498 + L2 LINE L2 3137 3248 -24 675 282 12 82 chr12 5264424 5264669 -139017820 + MIR SINE MIR 32 259 -3 199 250 0 0 chr12 5264680 5264716 -139017773 + L3b LINE CR1 1291 1326 -257 480 191 75 0 chr12 5264813 5264907 -139017582 + MER5A DNA MER1_type 9 109 -80 665 228 58 78 chr12 5265827 5266033 -139016456 + MIR SINE MIR 20 221 -41 408 313 113 0 chr12 5267221 5267371 -139015118 + MIR3 SINE MIR 40 206 -2 323 301 53 30 chr12 5270666 5270799 -139011690 + L1ME4a LINE L1 5975 6110 -11 268 296 0 0 chr12 5270912 5270983 -139011506 - L2 LINE L2 -2 3270 3200 261 57 0 0 chr12 5271121 5271156 -139011333 + (A)n Simple_repeat Simple_repeat 1 35 0 7479 37 4 3 chr12 5271223 5272166 -139010323 + L1PA5 LINE L1 5210 6154 0 2263 143 73 26 chr12 5272262 5272567 -139009922 - MER31A LTR ERV1 0 485 149 1185 210 93 101 chr12 5272567 5273180 -139009309 + LTR36 LTR ERV1 4 611 0 2263 143 73 26 chr12 5273180 5273337 -139009152 - MER31A LTR ERV1 -336 149 1 265 324 88 10 chr12 5273466 5273568 -139008921 - MIR SINE MIR -76 132 23 390 295 8 8 chr12 5273954 5274083 -139008406 + MLT2F LTR ERVL 511 639 -24 2091 202 78 11 chr12 5274471 5274931 -139007558 + MLT2F LTR ERVL 1 491 -172 180 200 0 0 chr12 5275539 5275584 -139006905 + (CCCCAG)n Simple_repeat Simple_repeat 3 47 0 813 238 11 0 chr12 5275612 5275797 -139006692 + MLT2F LTR ERVL 477 663 0 311 167 0 17 chr12 5275863 5275923 -139006566 + FAM SINE Alu 115 173 -2 2082 118 27 0 chr12 5275927 5276223 -139006266 + AluY SINE Alu 3 306 -5 410 327 44 23 chr12 5276375 5276579 -139005910 - MIR SINE MIR -45 217 4 792 219 31 85 chr12 5276710 5276934 -139005555 - MIR SINE MIR -2 260 49 468 328 41 26 chr12 5277736 5277931 -139004558 + MIR SINE MIR 63 260 -2 234 81 0 0 chr12 5278185 5278222 -139004267 + (CA)n Simple_repeat Simple_repeat 2 38 0 297 128 0 0 chr12 5278542 5278589 -139003900 + (A)n Simple_repeat Simple_repeat 1 47 0 257 217 12 72 chr12 5279164 5279247 -139003242 + MIR3 SINE MIR 124 201 -7 2978 148 24 16 chr12 5279277 5279776 -139002713 + MLT1D LTR MaLR 1 503 -2 354 249 141 68 chr12 5280063 5280240 -139002249 - MIR SINE MIR -58 204 15 796 243 15 5 chr12 5280316 5280495 -139001994 - MER5A DNA MER1_type -5 184 4 195 42 0 0 chr12 5281710 5281734 -139000755 + (GGGAA)n Simple_repeat Simple_repeat 3 26 0 326 186 12 0 chr12 5283389 5283475 -138999014 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 271 222 83 14 chr12 5283567 5283639 -138998850 + MER5A DNA MER1_type 14 90 -99 180 156 94 94 chr12 5283585 5283649 -138998840 - MER5A DNA MER1_type -21 168 105 * 639 338 92 5 chr12 5283756 5284205 -138998284 - LTR16B LTR ERVL -13 451 1 735 281 52 8 chr12 5285303 5285552 -138996937 + MIR SINE MIR 3 262 0 182 170 0 21 chr12 5286338 5286385 -138996104 + G-rich Low_complexity Low_complexity 2 47 0 2869 19 0 0 chr12 5291537 5291850 -138990639 + AluYb8 SINE Alu 1 313 -5 208 327 28 37 chr12 5292123 5292230 -138990259 - L2 LINE L2 -14 3258 3153 593 121 30 0 chr12 5292563 5292662 -138989827 - MER58 DNA MER1_type -1 2419 2318 519 294 72 13 chr12 5293429 5293582 -138988907 - MIR3 SINE MIR -27 181 20 299 331 132 0 chr12 5293891 5294012 -138988477 - L2 LINE L2 0 3272 3136 845 83 0 18 chr12 5296173 5296282 -138986207 - AluSq/x SINE Alu -161 151 45 183 336 80 50 chr12 5296303 5296541 -138985948 + L2 LINE L2 3024 3268 -4 2270 71 0 20 chr12 5296972 5297308 -138985181 - AluY SINE Alu 0 311 17 190 305 68 0 chr12 5297555 5297614 -138984875 - L2 LINE L2 -24 3248 3186 333 0 0 0 chr12 5298147 5298184 -138984305 + (TG)n Simple_repeat Simple_repeat 2 38 0 2333 104 0 0 chr12 5298184 5298481 -138984008 - AluSx SINE Alu -15 297 1 230 193 35 0 chr12 5298913 5298970 -138983519 - MARNA DNA Mariner -134 452 394 302 286 82 59 chr12 5299340 5299595 -138982894 + MIR SINE MIR 2 262 0 1548 208 20 10 chr12 5300403 5300697 -138981792 + AluJo SINE Alu 1 297 -15 444 285 223 0 chr12 5300831 5301024 -138981465 + MIR SINE MIR 1 236 -26 617 239 189 25 chr12 5301252 5301495 -138980994 + L2 LINE L2 3025 3307 -6 181 318 71 48 chr12 5301543 5301669 -138980820 + L2 LINE L2 3132 3260 -12 215 289 0 0 chr12 5302515 5302560 -138979929 - L2 LINE L2 -18 3254 3210 417 244 67 17 chr12 5302610 5302729 -138979760 - MIR3 SINE MIR -83 125 1 1498 217 17 0 chr12 5303096 5303391 -138979098 + AluJo SINE Alu 1 300 -12 234 204 0 0 chr12 5304262 5304306 -138978183 - MIR3 SINE MIR -1 207 164 386 305 102 0 chr12 5304317 5304435 -138978054 - MER5A DNA MER1_type 0 189 60 640 282 31 31 chr12 5304870 5305065 -138977424 - MIR SINE MIR -60 202 8 236 204 20 0 chr12 5305476 5305525 -138976964 - MIR SINE MIR -5 257 208 180 0 0 0 chr12 5305529 5305549 -138976940 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 789 150 18 0 chr12 5305549 5305662 -138976827 - FLAM_C SINE Alu -23 120 6 666 263 70 0 chr12 5305667 5305853 -138976636 - MIR SINE MIR -49 213 15 217 313 16 0 chr12 5305844 5305908 -138976581 - L3b LINE CR1 -217 1366 1302 * 322 218 211 68 chr12 5305910 5306057 -138976432 - L2 LINE L2 0 3313 3146 429 253 104 33 chr12 5307474 5307656 -138974833 + MIR SINE MIR 3 197 -65 1037 295 43 19 chr12 5308017 5308393 -138974096 - MLT1I LTR MaLR 0 409 25 345 302 111 48 chr12 5308627 5308816 -138973673 - MIR3 SINE MIR -5 203 3 366 248 219 0 chr12 5309185 5309290 -138973199 + L2 LINE L2 3184 3311 -2 * 449 322 122 14 chr12 5309287 5309501 -138972988 - MIR SINE MIR -19 243 7 2266 89 7 0 chr12 5309541 5309845 -138972644 - AluSx SINE Alu -6 306 1 23 78 0 0 chr12 5309965 5310016 -138972473 + AT_rich Low_complexity Low_complexity 1 51 0 1725 189 3 0 chr12 5310041 5310337 -138972152 - AluJo SINE Alu -15 297 1 489 305 55 0 chr12 5311347 5311511 -138970978 + MIR SINE MIR 64 236 -26 1751 149 0 17 chr12 5311572 5311861 -138970628 - AluJb SINE Alu -24 288 5 209 247 206 0 chr12 5312457 5312530 -138969959 + MIR SINE MIR 46 133 -129 180 152 0 0 chr12 5313256 5313289 -138969200 + T-rich Low_complexity Low_complexity 5 37 0 325 279 126 9 chr12 5313291 5313402 -138969087 - L2 LINE L2 -9 3263 3140 368 285 132 51 chr12 5313545 5313736 -138968753 - MIR SINE MIR -58 204 5 225 341 53 59 chr12 5314126 5314304 -138968185 + MIR3 SINE MIR 9 199 -63 420 242 0 22 chr12 5314753 5314844 -138967645 - MIR3 SINE MIR -17 191 103 216 333 151 0 chr12 5315661 5315754 -138966735 - MIR SINE MIR -109 153 47 185 346 0 0 chr12 5317915 5317967 -138964522 + MIR SINE MIR 16 67 -141 244 340 19 9 chr12 5320568 5320674 -138961815 - L3b LINE CR1 -185 1398 1292 185 246 58 72 chr12 5320924 5320993 -138961496 + L2 LINE L2 3205 3272 0 493 201 235 40 chr12 5321694 5321843 -138960646 + MER5A DNA MER1_type 9 186 -3 765 243 21 21 chr12 5321854 5322043 -138960446 + MER5A DNA MER1_type 1 189 0 187 258 81 0 chr12 5322528 5322590 -138959899 + MIR3 SINE MIR 110 176 -32 403 334 91 29 chr12 5322720 5323103 -138959386 - L1MEd LINE L1 -5366 753 347 359 294 91 62 chr12 5324397 5324672 -138957817 + HAL1 LINE L1 2225 2507 0 351 60 0 0 chr12 5325029 5325079 -138957410 + (CA)n Simple_repeat Simple_repeat 2 51 0 354 271 241 15 chr12 5326180 5326383 -138956106 + MIR SINE MIR 14 262 0 213 151 0 0 chr12 5326844 5326897 -138955592 + T-rich Low_complexity Low_complexity 1 53 0 462 244 144 37 chr12 5328180 5328451 -138954038 + LTR33 LTR ERVL 222 521 0 291 303 23 61 chr12 5328534 5328666 -138953823 + L2 LINE L2 3142 3268 -4 441 0 0 0 chr12 5329886 5329935 -138952554 + (TG)n Simple_repeat Simple_repeat 1 49 0 561 192 0 10 chr12 5330620 5330724 -138951765 - FLAM_A SINE Alu -22 120 18 240 269 0 0 chr12 5332121 5332173 -138950316 + (TG)n Simple_repeat Simple_repeat 2 53 0 2567 210 149 117 chr12 5332231 5332753 -138949736 - L1MC3 LINE L1 -16 7769 7265 350 196 21 82 chr12 5332753 5332850 -138949639 - MLT1F1 LTR MaLR -442 125 35 2567 210 149 117 chr12 5332850 5333574 -138948915 - L1MC3 LINE L1 -520 7265 6384 1133 225 74 21 chr12 5333615 5333953 -138948536 - L1ME3A LINE L1 -3 6167 5812 323 296 62 6 chr12 5333952 5334131 -138948358 - L1ME4a LINE L1 -227 5894 5706 * 454 296 169 21 chr12 5334155 5334398 -138948091 + L3 LINE CR1 1023 1301 -276 286 274 127 45 chr12 5334590 5334747 -138947742 + L3 LINE CR1 1374 1543 -34 322 188 43 0 chr12 5334933 5335002 -138947487 + L1MB1 LINE L1 6082 6153 -36 274 128 0 39 chr12 5335300 5335378 -138947111 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 1164 162 5 5 chr12 5335378 5335594 -138946895 - L1PA15 LINE L1 -12 6153 5938 2384 235 56 14 chr12 5335599 5336241 -138946248 - L1MC4a LINE L1 0 7808 7140 475 294 41 35 chr12 5337732 5337929 -138944560 + MIR SINE MIR 10 207 -55 196 259 161 25 chr12 5338261 5338342 -138944147 - MIR SINE MIR -73 135 44 318 283 40 10 chr12 5340065 5340164 -138942325 + MIR SINE MIR 135 236 -26 366 309 54 11 chr12 5340762 5340930 -138941559 - MIR3 SINE MIR -24 184 7 424 278 23 30 chr12 5341517 5341650 -138940839 + MIR SINE MIR 90 221 -41 282 309 58 22 chr12 5342732 5342871 -138939618 + MIR3 SINE MIR 4 147 -61 506 299 58 39 chr12 5343852 5344059 -138938430 - MIR SINE MIR -12 250 40 279 305 66 60 chr12 5345963 5346114 -138936375 + L2 LINE L2 3117 3268 -4 291 280 127 17 chr12 5346310 5346428 -138936061 - MIR3 SINE MIR -12 196 66 22 0 0 0 chr12 5346469 5346491 -138935998 + AT_rich Low_complexity Low_complexity 1 22 0 252 158 0 0 chr12 5347944 5348001 -138934488 + T-rich Low_complexity Low_complexity 1 57 0 4668 35 0 2 chr12 5348002 5348549 -138933940 - L1PA3 LINE L1 -1 6154 5609 3464 77 4 2 chr12 5348772 5349224 -138933265 + L1PA10 LINE L1 5665 6117 -51 213 344 0 0 chr12 5349622 5349683 -138932806 + MIR SINE MIR 49 109 -153 1684 241 77 42 chr12 5349689 5350427 -138932062 + L1ME2 LINE L1 3728 4491 -1655 2175 125 46 10 chr12 5350429 5351011 -138931478 - L1PB4 LINE L1 -547 5609 5015 3050 146 23 4 chr12 5351015 5351528 -138930961 + L1PB4 LINE L1 5622 6144 -12 2945 232 42 36 chr12 5351533 5352321 -138930168 + L1ME2 LINE L1 4477 5259 -905 1681 186 7 0 chr12 5352321 5352617 -138929872 - AluJb SINE Alu -14 298 1 2945 232 42 36 chr12 5352617 5353278 -138929211 + L1ME2 LINE L1 5259 5938 -226 2441 107 23 28 chr12 5353278 5353670 -138928819 + MLT1B LTR MaLR 1 390 0 2945 232 42 36 chr12 5353670 5353896 -138928593 + L1ME2 LINE L1 5938 6161 -3 341 311 93 7 chr12 5353896 5354047 -138928442 + MIR SINE MIR 92 255 -7 196 325 42 52 chr12 5354852 5355043 -138927446 + L2 LINE L2 2715 2903 -411 281 163 20 0 chr12 5355320 5355369 -138927120 + MER66A LTR ERV1 27 76 -402 337 314 122 0 chr12 5355550 5355722 -138926767 - MIR SINE MIR -24 238 46 205 182 0 23 chr12 5355926 5355970 -138926519 + CT-rich Low_complexity Low_complexity 1 43 0 390 42 0 0 chr12 5356212 5356260 -138926229 + (CA)n Simple_repeat Simple_repeat 2 49 0 679 303 79 45 chr12 5356801 5357204 -138925285 - MLT1K LTR MaLR -161 427 11 455 139 38 38 chr12 5357999 5358078 -138924411 + MER2 DNA MER2_type 1 79 -266 342 320 39 13 chr12 5358368 5358524 -138923965 - MIR SINE MIR -56 206 47 281 137 118 0 chr12 5358854 5358905 -138923584 - MLT2C1 LTR ERVL 0 520 464 43560 32 25 1 chr12 5358965 5364967 -138917522 - L1PA2 LINE L1 0 6155 4 979 151 104 5 chr12 5364968 5365160 -138917329 - Tigger1 DNA MER2_type -8 2410 2200 557 119 144 85 chr12 5365156 5365274 -138917215 - Tigger1 DNA MER2_type -2279 139 15 * 227 140 70 0 chr12 5365288 5365345 -138917144 + L1MC4 LINE L1 6641 6701 -1341 1787 180 30 3 chr12 5365364 5365697 -138916792 - MLT2C1 LTR ERVL -48 349 8 25357 202 29 26 chr12 5365703 5370186 -138912303 - ERVL-C2 LTR ERVL 0 5757 1289 2208 211 49 58 chr12 5370186 5370741 -138911748 + MLT2B3 LTR ERVL 1 550 -4 25357 202 29 26 chr12 5370741 5371713 -138910776 - ERVL-C2 LTR ERVL -4468 1289 177 279 0 0 0 chr12 5371713 5371744 -138910745 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 25357 202 29 26 chr12 5371744 5371915 -138910574 - ERVL-C2 LTR ERVL -5580 177 8 1964 151 47 114 chr12 5371915 5372404 -138910085 - MLT2C2 LTR ERVL -6 458 3 314 264 46 11 chr12 5372505 5372592 -138909897 + MLT1I LTR MaLR 320 409 0 588 206 73 30 chr12 5372820 5372985 -138909504 + MER5B DNA MER1_type 7 178 0 977 206 94 26 chr12 5375483 5375833 -138906656 + LTR37A LTR ERV1 53 426 0 222 284 136 23 chr12 5376458 5376546 -138905943 - MIR SINE MIR -5 257 160 188 298 0 0 chr12 5377633 5377690 -138904799 + L3 LINE CR1 404 460 -1117 197 0 71 0 chr12 5378247 5378275 -138904214 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 233 235 0 29 chr12 5378918 5378986 -138903503 + (CAGAGA)n Simple_repeat Simple_repeat 2 67 0 399 21 0 0 chr12 5379003 5379051 -138903438 + (CA)n Simple_repeat Simple_repeat 2 49 0 708 262 16 11 chr12 5379327 5379510 -138902979 + MIR SINE MIR 67 250 -12 490 308 50 6 chr12 5379526 5379685 -138902804 - MIR SINE MIR -75 187 22 1810 77 0 42 chr12 5379765 5380025 -138902464 - L1PB3 LINE L1 -154 6000 5752 956 212 0 0 chr12 5380507 5380677 -138901812 + AluJb SINE Alu 136 305 -7 219 236 0 18 chr12 5382079 5382134 -138900355 - MIR SINE MIR -67 141 88 2025 173 56 19 chr12 5382428 5382858 -138899631 - MER61C LTR ERV1 -1 433 4 593 272 44 11 chr12 5382931 5383111 -138899378 - MIR SINE MIR -70 192 7 331 288 68 41 chr12 5383929 5384148 -138898341 + L1MC5 LINE L1 7000 7224 -737 227 159 68 0 chr12 5384125 5384169 -138898320 + L1MC4 LINE L1 7201 7247 -795 * 430 263 63 99 chr12 5384179 5384769 -138897720 + L1MC5 LINE L1 7248 7733 -228 1854 141 41 63 chr12 5384986 5385216 -138897273 - MSTA LTR MaLR 0 428 207 2316 94 0 0 chr12 5385216 5385514 -138896975 - AluSc SINE Alu -7 302 5 1854 141 41 63 chr12 5385514 5385646 -138896843 - MSTA LTR MaLR -221 207 74 583 165 0 0 chr12 5385959 5386056 -138896433 - MSTA LTR MaLR -331 97 1 22 0 0 0 chr12 5386093 5386115 -138896374 + AT_rich Low_complexity Low_complexity 1 22 0 2318 44 0 0 chr12 5386122 5386395 -138896094 + AluY SINE Alu 35 307 -4 321 329 72 0 chr12 5386397 5386564 -138895925 - L1ME3A LINE L1 -300 5870 5692 279 344 32 0 chr12 5386580 5386737 -138895752 - L1ME3A LINE L1 -478 5643 5482 208 244 0 35 chr12 5386844 5386930 -138895559 + A-rich Low_complexity Low_complexity 2 84 0 727 259 144 19 chr12 5387663 5388169 -138894320 - L1ME3 LINE L1 -286 5880 5300 374 285 24 0 chr12 5388461 5388584 -138893905 - L1MA10 LINE L1 -3 6331 6206 654 141 10 10 chr12 5388587 5388686 -138893803 + FRAM SINE Alu 1 99 -77 344 307 40 74 chr12 5388698 5388734 -138893755 - L1MA10 LINE L1 -311 6001 5966 2868 209 34 61 chr12 5388734 5389090 -138893399 - L1MC4 LINE L1 -743 5403 5039 249 98 0 0 chr12 5389090 5389131 -138893358 + (CA)n Simple_repeat Simple_repeat 2 42 0 2868 209 34 61 chr12 5389131 5389331 -138893158 - L1MC4 LINE L1 -1107 5039 5492 2554 62 3 0 chr12 5389331 5389639 -138892850 - AluY SINE Alu -2 309 1 2868 209 34 61 chr12 5389639 5390396 -138892093 - L1MC4 LINE L1 -653 5493 4717 180 396 42 10 chr12 5391065 5391161 -138891328 - L2 LINE L2 -25 3247 3149 284 137 20 0 chr12 5392505 5392556 -138889933 + MER53 DNA DNA 138 189 0 286 293 57 19 chr12 5392728 5392834 -138889655 + L2 LINE L2 3195 3304 -9 1277 106 38 64 chr12 5392919 5393154 -138889335 - L1PA11 LINE L1 0 6174 5946 1692 141 39 0 chr12 5393154 5393437 -138889052 - L1P LINE L1 -1502 4644 4351 289 345 42 18 chr12 5397109 5397277 -138885212 - MIR3 SINE MIR -1 207 36 985 264 115 21 chr12 5397296 5397765 -138884724 + MER113 DNA MER1_type? 1 513 -8 181 343 29 20 chr12 5399278 5399380 -138883109 - MIR SINE MIR -63 145 43 557 253 28 50 chr12 5399987 5400169 -138882320 + MIR3 SINE MIR 9 186 -22 2672 233 82 17 chr12 5400654 5401763 -138880726 - MER69B DNA AcHobo 0 1226 1 233 204 0 0 chr12 5402075 5402119 -138880370 + L1ME LINE L1 5730 5773 -348 21 0 0 0 chr12 5402252 5402273 -138880216 + AT_rich Low_complexity Low_complexity 1 21 0 1424 223 38 11 chr12 5402452 5402739 -138879750 - AluJb SINE Alu -7 295 1 203 176 0 0 chr12 5402938 5402972 -138879517 + GA-rich Low_complexity Low_complexity 1 34 0 331 282 0 0 chr12 5404026 5404111 -138878378 - L2 LINE L2 -3 3310 3226 587 288 21 46 chr12 5405367 5405607 -138876882 - L1ME LINE L1 -314 5807 5574 263 299 11 35 chr12 5406172 5406259 -138876230 - L2 LINE L2 0 3272 3188 2523 197 85 4 chr12 5406459 5407001 -138875488 - L1MB7 LINE L1 -8 6176 5591 289 288 130 28 chr12 5407177 5407570 -138874919 - L1ME4a LINE L1 -209 5912 5480 318 373 15 0 chr12 5408074 5408208 -138874281 + L3b LINE CR1 1262 1397 -186 377 243 84 24 chr12 5408529 5408692 -138873797 - MIR SINE MIR -19 189 17 547 266 45 17 chr12 5408924 5409101 -138873388 + MIR SINE MIR 81 262 0 237 196 0 0 chr12 5409163 5409219 -138873270 + CT-rich Low_complexity Low_complexity 3 58 0 211 292 0 0 chr12 5409226 5409274 -138873215 - L2 LINE L2 -10 3262 3215 275 282 65 100 chr12 5409427 5409597 -138872892 - MIR3 SINE MIR -14 194 31 349 302 43 9 chr12 5410228 5410344 -138872145 + MIR SINE MIR 26 145 -63 189 0 0 0 chr12 5410479 5410500 -138871989 + (T)n Simple_repeat Simple_repeat 1 21 0 364 351 0 0 chr12 5411178 5411292 -138871197 + L2 LINE L2 3195 3308 -5 340 254 75 67 chr12 5412323 5412457 -138870032 - MIR SINE MIR -108 154 20 2353 35 0 3 chr12 5412734 5413052 -138869437 + AluY SINE Alu 1 317 0 234 224 20 0 chr12 5413989 5414038 -138868451 + L2 LINE L2 3137 3186 -86 195 250 133 0 chr12 5414906 5414966 -138867523 - MIR SINE MIR -95 113 46 794 218 93 5 chr12 5415029 5415222 -138867267 + MER44D DNA MER2_type 1 480 -129 233 234 0 0 chr12 5416335 5416382 -138866107 + L2 LINE L2 3225 3271 -1 1241 249 23 26 chr12 5416802 5417144 -138865345 - L1ME1 LINE L1 -18 6148 5808 3085 130 45 2 chr12 5417165 5417649 -138864840 - L1PB2 LINE L1 -1 6150 5646 1218 250 56 75 chr12 5417649 5418061 -138864428 - MLT2B3 LTR ERVL 0 554 151 2666 43 19 0 chr12 5418063 5418385 -138864104 - L1PA7 LINE L1 -246 5908 5581 531 300 37 16 chr12 5418949 5419139 -138863350 - MIR3 SINE MIR -7 201 8 952 316 8 0 chr12 5419308 5419564 -138862925 - MIR SINE MIR -4 258 1 302 267 37 82 chr12 5420604 5420739 -138861750 - L2 LINE L2 0 3313 3185 416 285 48 42 chr12 5420765 5420930 -138861559 - MIR3 SINE MIR -27 181 16 330 333 26 52 chr12 5421035 5421188 -138861301 - L3b LINE CR1 -136 1447 1299 187 316 119 18 chr12 5421544 5421712 -138860777 + MIR SINE MIR 7 191 -71 1759 152 19 13 chr12 5421834 5422144 -138860345 - AluSx SINE Alu 0 312 1 357 301 78 0 chr12 5422320 5422423 -138860066 + L2 LINE L2 3203 3313 0 243 299 31 21 chr12 5422679 5422776 -138859713 - MIR3 SINE MIR -2 206 109 1919 119 0 33 chr12 5423589 5423892 -138858597 + AluSg SINE Alu 1 293 -17 2018 129 3 0 chr12 5424435 5424746 -138857743 - AluSx SINE Alu 0 312 1 599 289 34 5 chr12 5425393 5425597 -138856892 - ERVL LTR ERVL -3793 1971 1762 2317 81 0 0 chr12 5425741 5426069 -138856420 + AluY SINE Alu 1 311 0 334 289 82 59 chr12 5426956 5427226 -138855263 - ERVL LTR ERVL -5142 622 347 696 198 96 0 chr12 5427582 5427739 -138854750 + MER45C DNA AcHobo 25 196 -757 212 86 29 0 chr12 5428253 5428288 -138854201 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 267 318 12 0 chr12 5429187 5429272 -138853217 + GA-rich Low_complexity Low_complexity 3 88 0 25 65 0 0 chr12 5429504 5429550 -138852939 + AT_rich Low_complexity Low_complexity 1 46 0 1151 244 70 45 chr12 5430060 5430416 -138852073 - MLT1A2 LTR MaLR -4 370 6 1182 291 154 28 chr12 5431447 5432503 -138849986 - L2 LINE L2 0 3313 2111 566 275 16 11 chr12 5432508 5432690 -138849799 - MER117 DNA MER1_type -5 192 10 779 156 133 64 chr12 5432888 5433019 -138849470 + MER5A DNA MER1_type 3 150 -39 1449 156 122 0 chr12 5433019 5433289 -138849200 - AluSx SINE Alu -9 303 1 779 156 133 64 chr12 5433289 5433330 -138849159 + MER5A DNA MER1_type 150 187 -2 316 311 149 19 chr12 5433856 5434017 -138848472 + MIR SINE MIR 21 202 -60 1030 202 160 93 chr12 5434082 5434533 -138847956 + MLT1D LTR MaLR 21 501 -4 180 210 99 62 chr12 5435386 5435467 -138847022 + L2 LINE L2 476 559 -2755 401 331 86 43 chr12 5436373 5436571 -138845918 - L3b LINE CR1 0 1583 1368 937 167 6 13 chr12 5436571 5436727 -138845762 + FRAM SINE Alu 1 155 -11 401 331 86 43 chr12 5436727 5436806 -138845683 - L3b LINE CR1 -215 1368 1294 180 250 25 75 chr12 5437140 5437220 -138845269 - L3 LINE CR1 -143 1434 1359 590 276 20 15 chr12 5437459 5437655 -138844834 + MER117 DNA MER1_type 1 197 0 184 200 29 0 chr12 5437725 5437760 -138844729 + L2 LINE L2 3230 3265 -7 2335 75 0 3 chr12 5438625 5438931 -138843558 + AluY SINE Alu 1 305 -6 591 232 187 25 chr12 5438993 5439191 -138843298 + MIR SINE MIR 31 260 -2 430 99 127 0 chr12 5439258 5439329 -138843160 + MADE1 DNA Mariner 1 80 0 402 39 0 0 chr12 5440028 5440080 -138842409 + (TG)n Simple_repeat Simple_repeat 1 52 0 273 57 0 0 chr12 5440080 5440115 -138842374 + (GA)n Simple_repeat Simple_repeat 2 36 0 213 260 0 115 chr12 5441809 5441905 -138840584 + L3b LINE CR1 1180 1264 -319 1679 232 127 12 chr12 5444976 5445471 -138837018 - MLT1H1 LTR MaLR -2 553 2 236 259 23 76 chr12 5447160 5447186 -138835303 - L1MC4 LINE L1 -1304 6738 6712 321 26 0 0 chr12 5447186 5447224 -138835265 + (TG)n Simple_repeat Simple_repeat 2 39 0 236 259 23 76 chr12 5447224 5447328 -138835161 - L1MC4 LINE L1 -1330 6712 6615 260 246 29 0 chr12 5447362 5447431 -138835058 + GA-rich Low_complexity Low_complexity 4 74 0 461 239 101 112 chr12 5447448 5447875 -138834614 + MLT1J1 LTR MaLR 1 422 -24 242 325 36 0 chr12 5448250 5448333 -138834156 + L3 LINE CR1 1405 1490 -87 641 104 21 10 chr12 5448342 5448438 -138834051 + AluSc SINE Alu 198 294 -15 2376 41 24 0 chr12 5448507 5448797 -138833692 - AluY SINE Alu -2 309 13 214 200 0 0 chr12 5450208 5450248 -138832241 + A-rich Low_complexity Low_complexity 1 40 0 259 282 87 68 chr12 5450477 5450580 -138831909 + L2 LINE L2 3143 3247 -25 650 289 122 28 chr12 5450590 5450950 -138831539 + MLT1I LTR MaLR 14 407 -2 483 18 0 0 chr12 5450975 5451031 -138831458 + (TGAA)n Simple_repeat Simple_repeat 3 58 0 266 319 106 28 chr12 5451220 5451361 -138831128 - L2 LINE L2 -22 3291 3140 1496 179 0 14 chr12 5451676 5451955 -138830534 + AluJb SINE Alu 1 275 -37 221 352 51 40 chr12 5452006 5452182 -138830307 - L2 LINE L2 -555 2759 2582 335 250 202 58 chr12 5453698 5453886 -138828603 - MIR SINE MIR -41 221 7 1525 194 19 10 chr12 5454174 5454459 -138828030 + AluJb SINE Alu 1 292 -128 294 29 0 0 chr12 5454459 5454494 -138827995 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 1525 194 19 10 chr12 5454494 5454625 -138827864 + AluJb SINE Alu 292 420 0 498 185 19 0 chr12 5454517 5454808 -138827681 + GA-rich Low_complexity Low_complexity 4 296 0 270 152 103 52 chr12 5456263 5456381 -138826108 - MIR SINE MIR -64 144 30 286 277 12 24 chr12 5456712 5456795 -138825694 + MIR SINE MIR 22 103 -105 1339 208 75 13 chr12 5461467 5461775 -138820714 + L1ME3 LINE L1 5825 6151 -11 22 0 0 0 chr12 5462042 5462064 -138820425 + AT_rich Low_complexity Low_complexity 1 22 0 2336 160 149 9 chr12 5463348 5463811 -138818678 + MER74A LTR ERVL 1 528 -30 363 23 0 0 chr12 5464376 5464420 -138818069 + (CA)n Simple_repeat Simple_repeat 2 45 0 406 292 32 50 chr12 5465747 5465966 -138816523 + LTR16C LTR ERVL 253 467 -24 760 284 34 13 chr12 5466571 5466807 -138815682 + LTR16A1 LTR ERVL 217 457 0 601 289 69 28 chr12 5466998 5467216 -138815273 + MIR SINE MIR 20 246 -16 299 158 103 137 chr12 5470308 5470454 -138812035 - MIR SINE MIR -66 142 2 1682 159 18 4 chr12 5470941 5471217 -138811272 - MLT1A1 LTR MaLR 0 365 86 2760 148 31 67 chr12 5471217 5471414 -138811075 - LTR26B LTR ERV1 0 531 328 2168 110 62 39 chr12 5471414 5471770 -138810719 - THE1B LTR MaLR 0 364 1 2760 148 31 67 chr12 5471770 5472094 -138810395 - LTR26B LTR ERV1 -203 328 29 1225 167 155 8 chr12 5472095 5472258 -138810231 - AluJb SINE Alu -16 296 158 503 62 0 104 chr12 5472258 5472354 -138810135 - L1PA5 LINE L1 0 6154 6069 1225 167 155 8 chr12 5472354 5472448 -138810041 - AluJb SINE Alu -154 158 1 322 51 0 0 chr12 5472448 5472487 -138810002 - LTR26B LTR ERV1 -492 39 1 406 176 47 24 chr12 5472490 5472575 -138809914 - MLT1A1 LTR MaLR -287 87 1 344 310 64 19 chr12 5472584 5472772 -138809717 - MIR3 SINE MIR -52 210 3 187 122 0 98 chr12 5474011 5474052 -138808437 - MIR SINE MIR -136 72 36 314 317 106 57 chr12 5474598 5474967 -138807522 + L2 LINE L2 2886 3272 0 302 302 9 9 chr12 5474980 5475086 -138807403 - MER69 DNA AcHobo 0 2526 2421 266 277 88 36 chr12 5476611 5476748 -138805741 + MIR3 SINE MIR 3 146 -62 198 231 0 0 chr12 5476862 5476901 -138805588 + L2 LINE L2 3255 3293 -20 195 268 0 0 chr12 5476868 5476909 -138805580 + MIR SINE MIR 216 256 -6 * 258 32 0 0 chr12 5477694 5477725 -138804764 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1862 126 7 3 chr12 5477734 5478019 -138804470 - AluSg SINE Alu -24 286 1 1073 81 0 0 chr12 5478019 5478155 -138804334 - AluSq/x SINE Alu -176 136 1 261 277 41 89 chr12 5478450 5478624 -138803865 - MIR SINE MIR -63 145 21 319 222 41 12 chr12 5478658 5478829 -138803660 + (TA)n Simple_repeat Simple_repeat 1 176 0 317 200 12 71 chr12 5480409 5480494 -138801995 + MIR SINE MIR 101 180 -82 508 274 95 37 chr12 5480904 5481094 -138801395 - MIR SINE MIR -42 220 20 234 279 15 0 chr12 5482409 5482477 -138800012 - MARNA DNA Mariner -106 480 412 1908 101 62 7 chr12 5484255 5484543 -138797946 + AluSx SINE Alu 1 304 -8 270 0 0 0 chr12 5484678 5484708 -138797781 + (TG)n Simple_repeat Simple_repeat 2 31 0 262 291 45 22 chr12 5485218 5485352 -138797137 - MLT1J2 LTR MaLR -239 211 75 277 288 101 88 chr12 5486508 5486963 -138795526 + L2 LINE L2 2812 3272 0 1569 151 7 53 chr12 5488061 5488365 -138794124 - AluJo SINE Alu -22 290 1 441 147 11 53 chr12 5488500 5488595 -138793894 + MIR SINE MIR 61 151 -111 1743 205 108 24 chr12 5488957 5489382 -138793107 - MLT1C LTR MaLR -6 461 1 203 250 59 29 chr12 5489424 5489492 -138792997 - MIR SINE MIR -89 173 104 391 284 57 28 chr12 5489566 5489742 -138792747 + MER5A DNA MER1_type 3 183 -6 318 258 76 61 chr12 5492714 5492846 -138789643 - L2 LINE L2 0 3313 3180 2057 101 7 16 chr12 5493079 5493386 -138789103 - AluY SINE Alu -7 304 1 777 269 111 1 chr12 5493628 5493839 -138788650 + MIR SINE MIR 5 237 -25 722 213 8 130 chr12 5493952 5494191 -138788298 - MER63A DNA MER1_type 0 210 1 28 79 0 0 chr12 5494668 5494731 -138787758 + AT_rich Low_complexity Low_complexity 1 63 0 778 288 30 13 chr12 5494794 5495030 -138787459 - MIR SINE MIR -2 260 21 654 141 67 15 chr12 5495045 5495180 -138787309 + Ricksha_a DNA DNA 12 153 -1028 * 5539 190 49 51 chr12 5495148 5495916 -138786573 + Ricksha DNA DNA 1712 2481 -765 2322 68 0 0 chr12 5495916 5496233 -138786256 - AluY SINE Alu 0 317 1 5539 190 49 51 chr12 5496233 5496999 -138785490 + Ricksha DNA DNA 2481 3246 0 410 232 176 0 chr12 5497181 5497306 -138785183 + MER96 DNA MER1_type? 27 173 -2 5504 150 27 9 chr12 5497539 5498468 -138784021 - L1MA9 LINE L1 0 6312 5367 308 263 38 98 chr12 5498905 5499038 -138783451 + MIR3 SINE MIR 76 200 -8 205 265 0 0 chr12 5499332 5499381 -138783108 - L2 LINE L2 -1 3312 3264 345 321 0 0 chr12 5499528 5499612 -138782877 - L2 LINE L2 -2 3270 3187 2888 117 2 9 chr12 5499662 5500091 -138782398 + L1PB3 LINE L1 5726 6151 -3 1070 211 5 10 chr12 5500579 5500788 -138781701 - MLT1C LTR MaLR -3 464 257 1729 202 123 40 chr12 5500903 5501342 -138781147 + MLT2B1 LTR ERVL 1 485 -35 213 39 0 0 chr12 5501342 5501368 -138781121 + (CA)n Simple_repeat Simple_repeat 2 27 0 1729 202 123 40 chr12 5501368 5501408 -138781081 + MLT2B1 LTR ERVL 485 520 0 663 301 85 4 chr12 5502448 5502684 -138779805 + MIR SINE MIR 5 259 -3 420 236 14 64 chr12 5502790 5502930 -138779559 - MIR3 SINE MIR 0 208 76 430 352 103 53 chr12 5502941 5503945 -138778544 - L2 LINE L2 -15 3257 2304 2376 72 10 0 chr12 5503945 5504252 -138778237 + AluY SINE Alu 1 310 -1 430 352 103 53 chr12 5504252 5505096 -138777393 - L2 LINE L2 -968 2304 1293 232 239 0 0 chr12 5505106 5505152 -138777337 - MIR SINE MIR -130 78 33 1431 174 83 0 chr12 5506189 5506454 -138776035 + AluJo SINE Alu 1 287 -25 957 271 161 21 chr12 5506532 5506967 -138775522 - MLT1H1 LTR MaLR -19 536 41 693 272 62 38 chr12 5507508 5507966 -138774523 + MLT1H LTR MaLR 22 587 -3 1052 175 18 51 chr12 5508542 5508759 -138773730 + MER20 DNA MER1_type 7 216 -3 1773 237 45 30 chr12 5508895 5509422 -138773067 + L1M4 LINE L1 3449 3983 -2163 6516 79 6 12 chr12 5509441 5510318 -138772171 + L1PA10 LINE L1 5298 6168 0 330 47 0 0 chr12 5510318 5510361 -138772128 - MADE1 DNA Mariner -37 43 1 346 330 51 24 chr12 5510410 5510601 -138771888 + MIR SINE MIR 7 206 -56 1259 167 0 5 chr12 5512202 5512406 -138770083 - AluSg/x SINE Alu -14 298 96 318 303 148 12 chr12 5513370 5513532 -138768957 + MIR3 SINE MIR 12 195 -13 2233 88 0 63 chr12 5513695 5514012 -138768477 - AluY SINE Alu -14 297 1 502 270 33 20 chr12 5514268 5514420 -138768069 - MIR3 SINE MIR -9 199 46 668 282 39 0 chr12 5515863 5516069 -138766420 - MIR SINE MIR 0 262 49 259 362 65 7 chr12 5516123 5516261 -138766228 - MIR3 SINE MIR -62 146 1 287 306 9 28 chr12 5516654 5516762 -138765727 - MIR SINE MIR -78 184 79 1231 287 132 30 chr12 5516771 5517684 -138764805 + L2 LINE L2 2326 3313 0 449 273 27 21 chr12 5518671 5518820 -138763669 + MIR SINE MIR 16 163 -63 268 311 168 19 chr12 5519587 5519748 -138762741 + MIR SINE MIR 53 237 -25 189 107 0 0 chr12 5520198 5520226 -138762263 + (TG)n Simple_repeat Simple_repeat 1 28 0 6365 58 1 11 chr12 5523311 5524135 -138758354 - L1PA5 LINE L1 0 6154 5364 226 279 135 0 chr12 5524135 5524239 -138758250 - MER113 DNA MER1_type? -176 345 228 253 292 35 42 chr12 5524338 5524482 -138758007 + L1ME LINE L1 4055 4197 -1949 352 300 118 30 chr12 5524578 5525051 -138757438 + L1ME LINE L1 4330 4844 -1302 328 315 88 21 chr12 5525095 5525333 -138757156 + L1ME LINE L1 5017 5270 -876 315 319 98 43 chr12 5525418 5525766 -138756723 + L1ME LINE L1 5384 5750 -412 396 295 23 66 chr12 5525779 5526037 -138756452 + L2 LINE L2 3006 3252 -61 43603 32 24 2 chr12 5527479 5533497 -138748992 - L1PA3 LINE L1 0 6155 1 1546 196 76 25 chr12 5534065 5534432 -138748057 + MLT1B LTR MaLR 5 390 0 278 249 68 79 chr12 5535213 5535390 -138747099 - MIR3 SINE MIR 0 208 34 459 325 39 10 chr12 5536766 5536972 -138745517 - LTR16A LTR ERVL -101 349 138 225 277 15 0 chr12 5537020 5537085 -138745404 - LTR16A1 LTR ERVL -319 138 73 623 286 40 0 chr12 5537106 5537281 -138745208 + MIR3 SINE MIR 21 202 -6 1547 158 104 188 chr12 5537701 5538519 -138743970 - Zaphod DNA AcHobo -1 4030 3282 945 285 0 12 chr12 5538520 5538762 -138743727 - Zaphod DNA AcHobo -3383 648 410 546 196 0 0 chr12 5538769 5538866 -138743623 + FLAM_A SINE Alu 34 130 -12 976 303 110 16 chr12 5538866 5539249 -138743240 - Zaphod DNA AcHobo -3604 427 9 228 350 50 25 chr12 5539357 5539477 -138743012 + L2 LINE L2 2620 2742 -572 210 150 0 0 chr12 5539486 5539526 -138742963 + (A)n Simple_repeat Simple_repeat 1 40 0 302 367 33 37 chr12 5539552 5539767 -138742722 + L2 LINE L2 2764 2977 -337 246 294 89 0 chr12 5540152 5540269 -138742220 + MIR SINE MIR 45 178 -69 1970 159 0 13 chr12 5540337 5540652 -138741837 + AluSx SINE Alu 1 311 -1 180 347 13 27 chr12 5541146 5541221 -138741268 + MIR3 SINE MIR 126 199 -9 21 36 0 0 chr12 5541243 5541271 -138741218 + AT_rich Low_complexity Low_complexity 1 28 0 357 380 28 6 chr12 5541517 5541696 -138740793 + MIR SINE MIR 20 202 -60 364 302 85 32 chr12 5543381 5543570 -138738919 - MIR SINE MIR -15 247 49 338 138 0 62 chr12 5544041 5544106 -138738383 - L2 LINE L2 -1085 2229 2169 740 287 38 43 chr12 5544741 5545163 -138737326 + L1MCc LINE L1 35 454 -5969 662 319 101 18 chr12 5545617 5546160 -138736329 + HAL1b LINE L1 53 640 -708 1710 231 150 67 chr12 5546495 5547458 -138735031 + L1MC5 LINE L1 6505 7530 -431 338 296 52 35 chr12 5547541 5547713 -138734776 + L1ME3A LINE L1 5987 6161 -9 209 262 19 37 chr12 5547717 5547824 -138734665 + (TATG)n Simple_repeat Simple_repeat 4 108 0 * 222 298 12 12 chr12 5547744 5547828 -138734661 + (TCTG)n Simple_repeat Simple_repeat 4 87 0 298 341 6 17 chr12 5548370 5548543 -138733946 + GA-rich Low_complexity Low_complexity 4 174 0 511 270 0 16 chr12 5549470 5549596 -138732893 + L2 LINE L2 3190 3313 0 581 276 13 84 chr12 5550026 5550251 -138732238 - MIR SINE MIR -5 257 49 263 296 281 0 chr12 5550401 5550604 -138731885 - MIR SINE MIR -1 261 2 203 226 19 19 chr12 5551100 5551153 -138731336 - L2 LINE L2 -3 3269 3217 418 310 78 0 chr12 5551347 5551499 -138730990 + MIR3 SINE MIR 33 197 -11 214 246 31 0 chr12 5552612 5552677 -138729812 - MIR SINE MIR -48 214 148 21 0 0 0 chr12 5553503 5553524 -138728965 + AT_rich Low_complexity Low_complexity 1 21 0 206 146 36 18 chr12 5553991 5554046 -138728443 + T-rich Low_complexity Low_complexity 4 59 0 353 252 131 44 chr12 5555247 5555453 -138727036 + MER5C DNA MER1_type 86 309 -15 324 207 133 30 chr12 5555534 5555669 -138726820 + MER103 DNA DNA 8 156 -10 1093 254 87 61 chr12 5555999 5556197 -138726292 + MLT1J LTR MaLR 3 194 -317 1954 97 23 0 chr12 5556197 5556454 -138726035 + AluSc SINE Alu 44 306 -3 1093 254 87 61 chr12 5556454 5556715 -138725774 + MLT1J LTR MaLR 194 474 -37 217 159 23 0 chr12 5556715 5556759 -138725730 + T-rich Low_complexity Low_complexity 2 46 0 2493 230 63 35 chr12 5556790 5557544 -138724945 - L1M4 LINE L1 -5720 822 5 924 283 79 41 chr12 5558057 5558425 -138724064 + L2 LINE L2 2157 2538 -776 1473 300 40 30 chr12 5558740 5559502 -138722987 + L2 LINE L2 2543 3313 0 334 291 39 0 chr12 5560413 5560516 -138721973 - MER103 DNA DNA -57 109 3 440 211 112 59 chr12 5560579 5560731 -138721758 + MER20B DNA MER1_type 43 202 -17 285 348 50 14 chr12 5560777 5560918 -138721571 - MIR3 SINE MIR -58 150 5 549 302 77 32 chr12 5561087 5561328 -138721161 - MIR SINE MIR -6 256 7 1823 176 10 3 chr12 5561939 5562246 -138720243 + AluSx SINE Alu 1 309 -3 10321 153 35 17 chr12 5562250 5565222 -138717267 + L1MA5 LINE L1 3046 6065 -235 4788 75 11 11 chr12 5565233 5565885 -138716604 - L1PA11 LINE L1 0 6174 5523 2032 218 54 41 chr12 5567417 5568467 -138714022 - L1MEc LINE L1 -3333 2882 1844 234 227 106 0 chr12 5568675 5568741 -138713748 - L1MC/D LINE L1 -1999 5809 5737 318 252 102 95 chr12 5568973 5569120 -138713369 - MIR3 SINE MIR -28 180 33 283 275 41 141 chr12 5569157 5569376 -138713113 - L3 LINE CR1 -9 1568 1379 2410 66 0 7 chr12 5569376 5569679 -138712810 + AluY SINE Alu 1 301 -10 283 275 41 141 chr12 5569679 5569728 -138712761 - L3 LINE CR1 -198 1379 1327 991 319 130 45 chr12 5569763 5570234 -138712255 - L3 LINE CR1 -412 1165 735 1533 192 0 17 chr12 5570234 5570531 -138711958 + AluJo SINE Alu 1 292 -20 2097 83 0 0 chr12 5570532 5570798 -138711691 + AluSc SINE Alu 44 309 0 991 319 130 45 chr12 5570798 5571094 -138711395 - L3 LINE CR1 -841 736 331 21 0 0 0 chr12 5571195 5571216 -138711273 + AT_rich Low_complexity Low_complexity 1 21 0 210 240 60 0 chr12 5572252 5572302 -138710187 + MIR3 SINE MIR 118 170 -38 882 204 21 5 chr12 5572375 5572561 -138709928 - MER5A DNA MER1_type 0 189 1 1119 198 107 0 chr12 5572622 5572865 -138709624 + Tigger4(Zombi) DNA MER2_type 1 269 -2462 1249 127 23 18 chr12 5572866 5573087 -138709402 + Tigger4(Zombi) DNA MER2_type 2510 2731 0 354 302 112 9 chr12 5573884 5574000 -138708489 - L2 LINE L2 -6 3266 3139 346 245 54 68 chr12 5575171 5575318 -138707171 + MER63A DNA MER1_type 61 205 -5 4073 113 9 3 chr12 5576663 5577300 -138705189 - L1PA16 LINE L1 -180 5986 5346 762 192 13 0 chr12 5577294 5577445 -138705044 + L1PA16 LINE L1 5994 6146 -20 * 30 59 0 0 chr12 5577449 5577500 -138704989 + AT_rich Low_complexity Low_complexity 1 51 0 639 251 24 86 chr12 5578013 5578268 -138704221 - MIR SINE MIR -3 259 21 22 35 0 0 chr12 5579131 5579160 -138703329 + AT_rich Low_complexity Low_complexity 1 29 0 206 240 0 20 chr12 5579427 5579477 -138703012 + CT-rich Low_complexity Low_complexity 3 51 0 241 336 112 0 chr12 5579666 5579782 -138702707 + L2 LINE L2 3137 3265 -7 2129 132 0 19 chr12 5580044 5580362 -138702127 + AluSx SINE Alu 1 312 0 1377 201 27 20 chr12 5580606 5580904 -138701585 + AluJo SINE Alu 1 300 -12 200 291 0 0 chr12 5580988 5581043 -138701446 + CT-rich Low_complexity Low_complexity 5 59 0 571 314 114 37 chr12 5581362 5581799 -138700690 + L3 LINE CR1 811 1281 -296 319 302 85 0 chr12 5581981 5582110 -138700379 - MIR SINE MIR -42 220 81 7091 48 14 0 chr12 5582530 5584154 -138698335 + L1PA7 LINE L1 4517 6152 -2 4683 168 7 8 chr12 5584404 5585296 -138697193 - L1MB7 LINE L1 -1 6183 5293 285 235 286 8 chr12 5586952 5587071 -138695418 + MIR3 SINE MIR 54 205 -3 241 285 73 73 chr12 5587074 5587225 -138695264 + L3b LINE CR1 1293 1443 -140 1810 141 3 37 chr12 5587287 5587586 -138694903 - AluJo SINE Alu -23 289 1 185 214 24 0 chr12 5588209 5588251 -138694238 + L2 LINE L2 3263 3305 -8 392 273 31 72 chr12 5588705 5588899 -138693590 + MIR3 SINE MIR 20 205 -3 461 224 34 84 chr12 5589022 5589201 -138693288 - L2 LINE L2 0 3313 3144 310 359 60 8 chr12 5590187 5590304 -138692185 + L2 LINE L2 3150 3272 0 231 303 8 59 chr12 5590312 5590431 -138692058 - MIR SINE MIR -60 202 90 306 232 0 0 chr12 5591456 5591525 -138690964 - MER96 DNA MER1_type? 0 175 107 25 0 0 0 chr12 5591742 5591767 -138690722 + AT_rich Low_complexity Low_complexity 1 25 0 2764 236 68 50 chr12 5592287 5593230 -138689259 + L1MB7 LINE L1 16 975 -5567 * 6524 239 52 41 chr12 5593228 5595573 -138686916 + L1MB7 LINE L1 813 3131 -3551 1205 215 79 27 chr12 5595573 5595940 -138686549 + MLT1B LTR MaLR 5 390 0 6524 239 52 41 chr12 5595940 5599266 -138683223 + L1MB7 LINE L1 3131 6620 -62 465 250 183 11 chr12 5599328 5599508 -138682981 - MLT1K LTR MaLR -2 586 376 326 247 153 24 chr12 5599546 5599631 -138682858 - MLT1K LTR MaLR -323 265 174 8642 117 8 30 chr12 5599922 5600607 -138681882 - Tigger1 DNA MER2_type 0 2418 1778 1567 194 3 48 chr12 5600607 5600922 -138681567 - AluJo SINE Alu -11 301 1 8642 117 8 30 chr12 5600922 5601646 -138680843 - Tigger1 DNA MER2_type -640 1778 1040 307 64 0 0 chr12 5601656 5601703 -138680786 + Alu SINE Alu 255 301 0 692 246 77 16 chr12 5601728 5601976 -138680513 + MLT1C LTR MaLR 205 467 0 2256 119 0 3 chr12 5602032 5602439 -138680050 + AluSg SINE Alu 1 406 0 1672 145 68 43 chr12 5602851 5603203 -138679286 - MER46B DNA MER2_type 0 236 1 905 174 56 0 chr12 5603842 5604020 -138678469 + L1MD3 LINE L1 7797 7984 -11 209 32 0 32 chr12 5604036 5604067 -138678422 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 465 254 8 54 chr12 5604843 5604973 -138677516 - MIR SINE MIR -75 187 64 252 281 79 36 chr12 5605323 5605462 -138677027 - MIR SINE MIR -116 146 2 221 139 23 0 chr12 5605577 5605620 -138676869 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 437 255 94 13 chr12 5605762 5605911 -138676578 + MIR3 SINE MIR 27 187 -21 285 303 193 0 chr12 5607370 5607489 -138675000 - L2 LINE L2 -239 3033 2892 216 67 0 0 chr12 5607651 5607681 -138674808 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2757 168 24 9 chr12 5608040 5608581 -138673908 + L1MC1 LINE L1 5481 6029 -304 676 189 13 38 chr12 5608590 5608749 -138673740 - L1PB3 LINE L1 -4 6150 5996 2789 60 2 50 chr12 5608879 5609282 -138673207 + L1PA7 LINE L1 5769 6152 -2 1723 184 14 0 chr12 5610808 5611086 -138671403 + AluJo SINE Alu 1 282 -30 833 185 0 0 chr12 5610951 5611088 -138671401 + AluJo/FRAM SINE Alu 148 308 0 196 42 0 0 chr12 5611088 5611112 -138671377 + (TAAA)n Simple_repeat Simple_repeat 2 136 0 21 0 0 0 chr12 5611239 5611260 -138671229 + AT_rich Low_complexity Low_complexity 1 21 0 389 328 107 74 chr12 5611349 5611752 -138670737 + L2 LINE L2 2837 3252 -20 2073 171 95 16 chr12 5611795 5612228 -138670261 - MER63C DNA MER1_type -28 902 436 243 0 0 0 chr12 5612228 5612255 -138670234 + (CA)n Simple_repeat Simple_repeat 2 28 0 1937 221 25 2 chr12 5612259 5612657 -138669832 - MER63C DNA MER1_type -521 409 3 187 355 37 45 chr12 5612695 5612937 -138669552 - L2 LINE L2 -217 3055 2816 207 0 0 0 chr12 5614269 5614292 -138668197 + (CA)n Simple_repeat Simple_repeat 2 24 0 2063 118 31 3 chr12 5614504 5614792 -138667697 - AluSx SINE Alu -16 296 1 2286 113 0 0 chr12 5615328 5615637 -138666852 - AluSq SINE Alu 0 313 5 293 209 9 118 chr12 5616160 5616270 -138666219 - L2 LINE L2 -3 3310 3213 471 241 68 0 chr12 5616471 5616604 -138665885 - MIR SINE MIR -12 250 109 2007 148 0 10 chr12 5618480 5618785 -138663704 + AluSx SINE Alu 1 302 -10 245 251 11 109 chr12 5618973 5619156 -138663333 + HAL1b LINE L1 78 242 -1106 883 212 75 37 chr12 5619470 5619711 -138662778 - MLT1K LTR MaLR -13 575 326 283 327 184 0 chr12 5619731 5619899 -138662590 - MLT1K LTR MaLR -389 199 1 212 302 12 12 chr12 5620385 5620471 -138662018 - MIR3 SINE MIR -41 167 82 264 306 36 36 chr12 5620506 5620617 -138661872 + MIR SINE MIR 17 127 -81 1384 71 0 0 chr12 5621630 5621798 -138660691 - AluY SINE Alu 0 311 144 229 289 99 49 chr12 5621886 5622028 -138660461 + MIR3 SINE MIR 2 114 -94 627 248 12 12 chr12 5623079 5623240 -138659249 + MER97a DNA MER1_type? 19 179 -715 242 239 28 28 chr12 5623343 5623414 -138659075 - L2 LINE L2 -2 3270 3200 1284 219 107 44 chr12 5623972 5624186 -138658303 - Charlie4a DNA MER1_type -1454 507 308 3223 83 42 16 chr12 5624186 5624231 -138658258 - MLT2A1 LTR ERVL 0 444 402 315 0 0 0 chr12 5624231 5624266 -138658223 + (CA)n Simple_repeat Simple_repeat 2 36 0 3223 83 42 16 chr12 5624266 5624653 -138657836 - MLT2A1 LTR ERVL -42 402 1 1284 219 107 44 chr12 5624653 5624914 -138657575 - Charlie4a DNA MER1_type -1653 308 2 268 268 42 14 chr12 5626154 5626225 -138656264 - MIR3 SINE MIR -49 159 87 255 271 85 39 chr12 5627159 5627288 -138655201 + L2 LINE L2 3136 3270 -2 2003 148 10 0 chr12 5627856 5628159 -138654330 + AluJb SINE Alu 1 306 -6 205 326 0 0 chr12 5628199 5628248 -138654241 + L2 LINE L2 3211 3259 -13 662 287 11 0 chr12 5628295 5628469 -138654020 - MER5A DNA MER1_type -1 188 13 947 264 98 46 chr12 5628527 5629008 -138653481 + MLT1J LTR MaLR 3 508 -3 191 310 116 72 chr12 5629084 5629516 -138652973 + L2 LINE L2 2032 2482 -832 2347 118 128 10 chr12 5629866 5630249 -138652240 + MSTA LTR MaLR 1 428 0 230 315 74 62 chr12 5630284 5630446 -138652043 + L2 LINE L2 2919 3082 -190 287 273 58 33 chr12 5633205 5633326 -138649163 + MIR3 SINE MIR 3 126 -82 988 223 19 23 chr12 5633420 5633635 -138648854 - MER20 DNA MER1_type -5 214 1 21 71 0 0 chr12 5633797 5633839 -138648650 + AT_rich Low_complexity Low_complexity 1 42 0 318 358 20 55 chr12 5633885 5634006 -138648483 - L3 LINE CR1 -11 1566 1453 1346 205 78 61 chr12 5634006 5634465 -138648024 - MLT1C LTR MaLR 0 467 1 318 358 20 55 chr12 5634465 5634544 -138647945 - L3 LINE CR1 -124 1453 1373 23 33 0 0 chr12 5634913 5634943 -138647546 + AT_rich Low_complexity Low_complexity 1 30 0 261 0 0 0 chr12 5635010 5635039 -138647450 + (TAG)n Simple_repeat Simple_repeat 1 29 0 315 309 12 30 chr12 5635219 5635387 -138647102 + CT-rich Low_complexity Low_complexity 1 165 0 2837 0 3 0 chr12 5636425 5636728 -138645761 + AluYa5 SINE Alu 1 304 -7 788 219 69 94 chr12 5636800 5637192 -138645297 + MLT1B LTR MaLR 9 390 0 352 349 40 7 chr12 5637267 5637419 -138645070 + MIR SINE MIR 25 181 -81 2168 107 0 25 chr12 5639628 5639945 -138642544 - AluSx SINE Alu -3 309 1 779 296 78 21 chr12 5639973 5640411 -138642078 + L2 LINE L2 2578 3042 -230 343 374 7 7 chr12 5640738 5640877 -138641612 + L2 LINE L2 3134 3272 0 559 291 139 36 chr12 5641092 5641315 -138641174 + MIR SINE MIR 3 248 -14 400 289 122 44 chr12 5641480 5641864 -138640625 + MLT1J LTR MaLR 73 486 -25 336 245 104 43 chr12 5642086 5642249 -138640240 + MIR SINE MIR 57 229 -33 240 111 0 0 chr12 5642781 5642817 -138639672 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 427 306 44 50 chr12 5643199 5643379 -138639110 + MIR3 SINE MIR 20 198 -10 246 293 37 0 chr12 5643789 5643871 -138638618 - MIR SINE MIR -87 175 91 342 67 0 0 chr12 5645533 5645578 -138636911 + (TG)n Simple_repeat Simple_repeat 1 45 0 192 288 15 61 chr12 5645618 5645684 -138636805 - L2 LINE L2 -1 3271 3209 2141 172 5 52 chr12 5646616 5647023 -138635466 - MLT1B LTR MaLR -2 388 1 196 226 32 16 chr12 5647237 5647299 -138635190 - L2 LINE L2 -302 2970 2908 213 300 29 14 chr12 5648139 5648209 -138634280 - L2 LINE L2 -1 3271 3201 197 263 156 50 chr12 5648667 5648833 -138633656 - MIR SINE MIR -35 227 21 463 278 30 30 chr12 5649340 5649509 -138632980 - MIR SINE MIR -8 254 86 * 655 199 96 143 chr12 5649505 5649744 -138632745 - MIR SINE MIR -35 227 9 615 306 73 46 chr12 5650150 5650631 -138631858 - L3 LINE CR1 -519 1058 565 24 53 0 0 chr12 5650862 5650900 -138631589 + AT_rich Low_complexity Low_complexity 1 38 0 368 397 22 6 chr12 5651369 5651548 -138630941 - MIR3 SINE MIR -7 201 20 696 293 59 43 chr12 5651782 5652038 -138630451 - MIR SINE MIR 0 262 3 315 233 159 101 chr12 5652497 5652686 -138629803 - MIR SINE MIR -37 225 26 825 271 23 26 chr12 5653315 5653581 -138628908 - L1ME3A LINE L1 -11 6142 5878 198 191 0 0 chr12 5653587 5653629 -138628860 + (TA)n Simple_repeat Simple_repeat 2 43 0 231 303 90 0 chr12 5653633 5653722 -138628767 + L1MC4 LINE L1 6607 6703 -1339 * 250 211 0 0 chr12 5653680 5653732 -138628757 - L1MC4 LINE L1 -1339 6703 6652 819 183 20 26 chr12 5653742 5653895 -138628594 - FRAM SINE Alu -33 143 1 3766 256 77 43 chr12 5653906 5655585 -138626904 - L1ME3A LINE L1 -264 5889 4269 419 33 250 0 chr12 5655585 5655645 -138626844 + MADE1 DNA Mariner 2 76 -4 3766 256 77 43 chr12 5655645 5655798 -138626691 - L1ME3A LINE L1 -1884 4269 4123 381 43 0 0 chr12 5655798 5655845 -138626644 + (TG)n Simple_repeat Simple_repeat 1 47 0 3766 256 77 43 chr12 5655845 5656732 -138625757 - L1ME3A LINE L1 -2030 4123 3063 764 249 76 22 chr12 5656734 5656919 -138625570 - AluJo SINE Alu -18 294 100 717 301 91 6 chr12 5656921 5657263 -138625226 - L1ME3A LINE L1 -3094 3035 2665 839 180 42 31 chr12 5657269 5657578 -138624911 - MLT1B LTR MaLR 0 428 97 1350 240 110 6 chr12 5657585 5657939 -138624550 - MSTD LTR MaLR -4 392 2 504 186 31 0 chr12 5657940 5658037 -138624452 - MLT1B LTR MaLR -272 102 3 385 312 77 17 chr12 5658064 5658426 -138624063 - L1ME3A LINE L1 -3501 2628 2245 848 288 118 37 chr12 5658518 5659820 -138622669 - L1MEd LINE L1 -4138 2172 715 1151 239 9 44 chr12 5660670 5660988 -138621501 - L1ME2 LINE L1 -124 5974 5668 1665 228 157 47 chr12 5660990 5661128 -138621361 - L1ME2 LINE L1 -2056 4024 3903 351 0 0 0 chr12 5661128 5661167 -138621322 + (TG)n Simple_repeat Simple_repeat 2 40 0 1665 228 157 47 chr12 5661167 5661316 -138621173 - L1ME2 LINE L1 -2177 3903 3772 360 0 0 0 chr12 5661316 5661356 -138621133 + (TA)n Simple_repeat Simple_repeat 2 41 0 1665 228 157 47 chr12 5661356 5661384 -138621105 - L1ME2 LINE L1 -2308 3772 3748 2833 106 0 11 chr12 5661384 5661752 -138620737 + THE1B LTR MaLR 1 364 0 1665 228 157 47 chr12 5661752 5662402 -138620087 - L1ME2 LINE L1 -2332 3748 2903 753 192 8 0 chr12 5662404 5662534 -138619955 - FLAM_C SINE Alu -6 137 7 1390 246 45 14 chr12 5662534 5663025 -138619464 - L1ME2 LINE L1 -3161 2919 2414 430 275 15 65 chr12 5662993 5663193 -138619296 - L1ME2 LINE L1 -5810 260 71 * 1357 178 74 0 chr12 5663258 5663527 -138618962 + AluJb SINE Alu 1 289 -23 21 36 0 0 chr12 5663610 5663638 -138618851 + AT_rich Low_complexity Low_complexity 1 28 0 596 326 82 14 chr12 5663805 5664099 -138618390 - L3 LINE CR1 -13 1564 1251 1719 144 0 61 chr12 5664279 5664592 -138617897 + AluSx SINE Alu 1 294 -18 200 180 0 60 chr12 5664976 5665026 -138617463 + GA-rich Low_complexity Low_complexity 2 48 0 353 322 20 18 chr12 5665074 5665251 -138617238 + MIR3 SINE MIR 4 180 -28 2346 51 0 0 chr12 5665730 5666022 -138616467 + AluY SINE Alu 1 292 -19 424 364 56 0 chr12 5666470 5666632 -138615857 + MER91A DNA MER1_type 1 171 -25 331 227 118 27 chr12 5666759 5666869 -138615620 + MIR SINE MIR 26 145 -63 537 244 42 36 chr12 5666892 5667049 -138615440 + MIR SINE MIR 21 181 -62 452 293 24 37 chr12 5667047 5667211 -138615278 - MIR SINE MIR -77 185 24 * 265 182 0 78 chr12 5667274 5667351 -138615138 + L1MC4 LINE L1 6636 6706 -1336 224 300 0 0 chr12 5667353 5667413 -138615076 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 184 241 3 24 chr12 5667414 5667510 -138614979 + MIR SINE MIR 196 259 -3 210 303 72 10 chr12 5668772 5668872 -138613617 - MIR SINE MIR -68 140 31 435 319 89 0 chr12 5670262 5670419 -138612070 - MIR SINE MIR -22 240 70 184 293 0 0 chr12 5671232 5671273 -138611216 - MIR3 SINE MIR -29 179 139 198 208 0 0 chr12 5672250 5672298 -138610191 + CT-rich Low_complexity Low_complexity 2 49 0 194 73 55 18 chr12 5674516 5674571 -138607918 + (CGCGG)n Simple_repeat Simple_repeat 1 57 0 471 18 0 0 chr12 5675095 5675151 -138607338 + (CA)n Simple_repeat Simple_repeat 2 57 0 306 0 0 0 chr12 5677011 5677045 -138605444 + (TG)n Simple_repeat Simple_repeat 2 35 0 314 319 43 7 chr12 5678928 5679069 -138603420 + MIR SINE MIR 8 153 -109 476 230 66 71 chr12 5681219 5681415 -138601074 + MIR3 SINE MIR 8 202 -6 221 221 301 26 chr12 5681758 5681871 -138600618 - MIR SINE MIR -16 246 103 422 193 73 37 chr12 5683218 5683327 -138599162 + MIR3 SINE MIR 77 189 -19 225 324 106 47 chr12 5683623 5683793 -138598696 + MIR3 SINE MIR 12 191 -17 248 235 244 17 chr12 5684109 5684224 -138598265 + L2 LINE L2 3173 3313 0 183 298 64 43 chr12 5685364 5685458 -138597031 - L2 LINE L2 -40 3273 3178 211 188 16 16 chr12 5686393 5686457 -138596032 + GA-rich Low_complexity Low_complexity 1 64 0 230 284 125 11 chr12 5687210 5687298 -138595191 - L2 LINE L2 -540 2774 2677 221 265 15 0 chr12 5687320 5687388 -138595101 + (TGAA)n Simple_repeat Simple_repeat 3 71 0 420 20 0 0 chr12 5687827 5687876 -138594613 + (TG)n Simple_repeat Simple_repeat 2 50 0 368 204 194 0 chr12 5688174 5688272 -138594217 + MER5B DNA MER1_type 61 177 -1 211 282 64 39 chr12 5688668 5688746 -138593743 - MIR SINE MIR -31 231 152 284 250 201 8 chr12 5690037 5690191 -138592298 + MIR SINE MIR 42 228 -34 291 325 149 30 chr12 5691446 5691714 -138590775 - L2 LINE L2 -3 3269 2970 240 328 90 0 chr12 5693138 5693272 -138589217 - MIR SINE MIR 0 262 117 597 275 15 35 chr12 5693281 5693481 -138589008 + L2 LINE L2 3118 3313 0 283 321 28 46 chr12 5693473 5693582 -138588907 - MIR SINE MIR -153 109 3 * 336 150 17 17 chr12 5693679 5693739 -138588750 + MIR SINE MIR 116 175 -87 346 292 98 76 chr12 5694028 5694212 -138588277 - L1ME4a LINE L1 -2 6119 5940 1498 191 3 31 chr12 5694212 5694531 -138587958 - AluJo SINE Alu -2 310 1 346 292 98 76 chr12 5694531 5694624 -138587865 - L1ME4a LINE L1 -181 5940 5850 2351 68 0 7 chr12 5694624 5694933 -138587556 - AluSc SINE Alu -2 307 1 346 292 98 76 chr12 5694933 5695165 -138587324 - L1ME4a LINE L1 -271 5850 5598 921 265 28 16 chr12 5695458 5695711 -138586778 + MIR SINE MIR 5 260 -2 1914 174 67 59 chr12 5696568 5697029 -138585460 - MLT1C LTR MaLR 0 467 3 344 321 65 27 chr12 5697403 5697587 -138584902 + MIR3 SINE MIR 3 193 -15 459 0 0 0 chr12 5698072 5698123 -138584366 + (CA)n Simple_repeat Simple_repeat 2 52 0 406 222 9 46 chr12 5698732 5698840 -138583649 - MER20B DNA MER1_type -677 106 3 201 39 0 0 chr12 5699143 5699169 -138583320 + (CCCCCA)n Simple_repeat Simple_repeat 2 27 0 557 301 165 54 chr12 5699970 5700528 -138581961 + L2 LINE L2 1988 2607 -707 308 356 22 85 chr12 5700598 5701090 -138581399 + L2 LINE L2 2812 3272 0 246 128 0 0 chr12 5701396 5701435 -138581054 + (CA)n Simple_repeat Simple_repeat 1 39 0 2670 148 26 16 chr12 5702552 5703046 -138579443 - L1MC2 LINE L1 0 6344 5846 418 221 11 21 chr12 5704597 5704692 -138577797 - MER117 DNA MER1_type 0 197 104 443 253 62 14 chr12 5704697 5704843 -138577646 - MER117 DNA MER1_type -43 154 2 442 285 93 89 chr12 5704843 5705089 -138577400 + MIR SINE MIR 8 254 -8 265 211 46 92 chr12 5705165 5705274 -138577215 - L3b LINE CR1 -250 1333 1230 234 359 34 83 chr12 5705848 5706113 -138576376 - L2 LINE L2 -78 3194 2943 477 239 0 0 chr12 5706342 5706430 -138576059 + MIR3 SINE MIR 70 157 -51 182 241 52 35 chr12 5706724 5706782 -138575707 - L2 LINE L2 -1 3271 3213 422 190 13 13 chr12 5706889 5706967 -138575522 + Tigger5 DNA MER2_type 1 78 -2245 285 282 13 0 chr12 5706967 5707045 -138575444 - Tigger5 DNA MER2_type -3 2320 2242 245 180 328 0 chr12 5707035 5707096 -138575393 + Tigger5 DNA MER2_type 2242 2322 -1 * 357 182 149 33 chr12 5707097 5707218 -138575271 - MER5A DNA MER1_type -54 135 1 313 243 9 90 chr12 5707552 5707663 -138574826 - MIR3 SINE MIR -22 186 85 249 253 0 46 chr12 5708053 5708140 -138574349 - MIR SINE MIR -6 256 174 424 268 0 47 chr12 5708480 5708607 -138573882 - MIR3 SINE MIR -83 125 5 2280 91 3 0 chr12 5709489 5709797 -138572692 + AluSg1 SINE Alu 1 309 0 310 286 22 11 chr12 5710164 5710255 -138572234 + MIR SINE MIR 56 147 -61 1787 166 0 0 chr12 5711377 5711679 -138570810 + AluJb SINE Alu 1 302 -10 236 347 29 23 chr12 5913138 5913311 -138369178 + MIR SINE MIR 54 227 -35 228 228 35 0 chr12 5914193 5914250 -138368239 - MIR3 SINE MIR -49 159 101 1295 233 62 48 chr12 5914275 5914773 -138367716 + MLT1D LTR MaLR 1 505 0 189 0 0 0 chr12 5916682 5916703 -138365786 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 219 36 0 0 chr12 5916702 5916730 -138365759 + (GA)n Simple_repeat Simple_repeat 1 28 0 449 305 7 20 chr12 5917143 5917294 -138365195 + MIR SINE MIR 49 197 -65 784 310 89 43 chr12 5917372 5919145 -138363344 - L1MEd LINE L1 -743 5386 3533 21 36 0 0 chr12 5919209 5919237 -138363252 + AT_rich Low_complexity Low_complexity 1 28 0 1294 188 30 4 chr12 5919242 5919476 -138363013 + AluJo SINE Alu 45 284 -28 22 0 0 0 chr12 5919600 5919622 -138362867 + AT_rich Low_complexity Low_complexity 1 22 0 1640 283 32 45 chr12 5919647 5920451 -138362038 - L1MEd LINE L1 -2846 3283 2495 2471 133 3 3 chr12 5920451 5920812 -138361677 - THE1B LTR MaLR -3 361 1 1640 283 32 45 chr12 5920812 5921046 -138361443 - L1MEd LINE L1 -3634 2495 2259 431 257 46 135 chr12 5921277 5921604 -138360885 - L1ME3A LINE L1 -220 5950 5653 1219 157 4 58 chr12 5921697 5921939 -138360550 - MER46A DNA MER2_type -4 232 4 481 231 56 65 chr12 5921960 5922281 -138360208 - L1MEd LINE L1 -5017 1102 785 247 270 18 81 chr12 5922876 5922987 -138359502 + MLT1L LTR MaLR 20 123 -492 562 247 141 38 chr12 5923009 5923272 -138359217 + MLT1L LTR MaLR 322 611 -4 507 301 87 41 chr12 5923457 5923723 -138358766 + MLT1I LTR MaLR 114 391 -18 252 0 0 0 chr12 5924137 5924165 -138358324 + (A)n Simple_repeat Simple_repeat 1 28 0 252 0 0 0 chr12 5924751 5924779 -138357710 + (CA)n Simple_repeat Simple_repeat 2 29 0 1346 247 56 18 chr12 5924829 5925278 -138357211 - Charlie4a DNA MER1_type -17 491 26 264 311 142 0 chr12 5925756 5925904 -138356585 - MIR SINE MIR -6 256 88 202 333 0 0 chr12 5926058 5926121 -138356368 - L3 LINE CR1 -156 1421 1359 476 274 154 48 chr12 5926192 5926549 -138355940 - L2 LINE L2 -4 3309 2915 3111 190 40 49 chr12 5926735 5927214 -138355275 + MER21B LTR ERV1 1 474 -389 2289 122 0 0 chr12 5927214 5927525 -138354964 - AluSq SINE Alu -2 311 1 3111 190 40 49 chr12 5927525 5927719 -138354770 + MER21B LTR ERV1 474 668 -195 461 132 95 3 chr12 5927718 5927807 -138354682 + MER21A LTR ERV1 773 912 0 * 6189 134 12 7 chr12 5927984 5928924 -138353565 + LTR5 LTR ERVK 1 944 -25 1456 270 123 83 chr12 5929000 5930363 -138352126 - L2 LINE L2 -621 2693 1276 332 236 173 0 chr12 5930607 5930717 -138351772 + MIR SINE MIR 63 191 -71 1491 120 87 40 chr12 5930726 5931002 -138351487 + Tigger2a DNA MER2_type 1 289 -145 11417 183 18 8 chr12 5931036 5932766 -138349723 - L1PB2 LINE L1 0 6151 4376 180 0 0 0 chr12 5932766 5932786 -138349703 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 11417 183 18 8 chr12 5932786 5934409 -138348080 - L1PB2 LINE L1 -1775 4376 2771 7127 119 52 45 chr12 5934410 5936236 -138346253 + L1PB2 LINE L1 1664 3501 -3361 867 191 20 0 chr12 5936239 5936386 -138346103 + Tigger2a DNA MER2_type 294 443 -1 604 259 27 84 chr12 5936629 5936926 -138345563 + MLT1J LTR MaLR 4 283 -228 625 276 33 0 chr12 5937063 5937215 -138345274 + MER115 DNA AcHobo 152 308 -385 304 303 155 13 chr12 5937225 5937380 -138345109 - L2 LINE L2 -252 3061 2885 217 238 0 0 chr12 5939077 5939119 -138343370 + CT-rich Low_complexity Low_complexity 3 44 0 199 373 62 8 chr12 5939595 5939793 -138342696 + MIR SINE MIR 2 212 -50 829 164 14 0 chr12 5940396 5940542 -138341947 - FAM SINE Alu -7 42 1 2601 137 29 14 chr12 5940988 5941405 -138341084 + MSTB LTR MaLR 4 426 0 200 236 258 0 chr12 5942235 5942324 -138340165 - MIR SINE MIR -115 147 36 182 266 71 53 chr12 5942442 5942555 -138339934 + MIR SINE MIR 16 130 -132 6174 97 17 2 chr12 5943031 5943996 -138338493 + L1PB1 LINE L1 5137 6113 -38 218 176 0 0 chr12 5943996 5944030 -138338459 + polypurine Low_complexity Low_complexity 2 35 0 839 89 11 56 chr12 5944031 5944211 -138338278 + (GAAA)n Simple_repeat Simple_repeat 1 172 0 283 267 13 0 chr12 5944769 5944844 -138337645 + MIR SINE MIR 78 153 -109 1506 193 102 55 chr12 5944948 5945436 -138337053 + MER69 DNA AcHobo 2013 2523 -3 1971 119 29 10 chr12 5946333 5946643 -138335846 - L1PB1 LINE L1 -17 6134 5819 2480 60 0 13 chr12 5946643 5946945 -138335544 - AluY SINE Alu -13 298 1 1029 92 0 7 chr12 5946945 5947087 -138335402 - L1PB1 LINE L1 -544 5607 5467 388 319 63 49 chr12 5947836 5948203 -138334286 + HAL1b LINE L1 219 590 -758 983 230 84 16 chr12 5948212 5948548 -138333941 - LTR16A LTR ERVL 0 457 81 1347 160 29 19 chr12 5948826 5949129 -138333360 - MER61C LTR ERV1 -30 404 1 257 288 0 25 chr12 5949713 5949831 -138332658 + L1ME4a LINE L1 6007 6121 0 2035 170 67 22 chr12 5950317 5950723 -138331766 + MER21B LTR ERV1 1 424 -439 368 232 43 70 chr12 5950724 5950909 -138331580 + L2 LINE L2 3112 3291 -22 2488 45 7 32 chr12 5950914 5951223 -138331266 - AluY SINE Alu -10 301 1 3036 127 2 7 chr12 5951319 5951782 -138330707 + MER4C LTR ERV1 3 463 -2 2399 85 3 0 chr12 5952352 5952645 -138329844 + AluSp SINE Alu 1 294 -19 295 216 27 27 chr12 5953103 5953177 -138329312 - MER117 DNA MER1_type -119 78 5 642 238 101 11 chr12 5953238 5953427 -138329062 + L2 LINE L2 3089 3294 -19 1008 66 0 0 chr12 5953427 5953564 -138328925 + (GGAGA)n Simple_repeat Simple_repeat 5 141 0 21 0 0 0 chr12 5953614 5953635 -138328854 + AT_rich Low_complexity Low_complexity 1 21 0 526 308 45 0 chr12 5954568 5954789 -138327700 + MIR SINE MIR 29 259 -3 347 304 70 18 chr12 5957622 5957793 -138324696 - MIR SINE MIR -72 190 11 182 150 25 0 chr12 5957930 5957970 -138324519 + GA-rich Low_complexity Low_complexity 5 45 0 206 231 0 0 chr12 5958413 5958452 -138324037 + (CA)n Simple_repeat Simple_repeat 1 39 0 240 267 58 42 chr12 5958452 5958572 -138323917 - L3b LINE CR1 -184 1399 1278 667 198 81 137 chr12 5958926 5959078 -138323411 + MER112 DNA MER1_type 23 157 -103 2028 62 11 19 chr12 5959078 5959338 -138323151 - AluY SINE Alu -9 302 45 667 198 81 137 chr12 5959338 5959433 -138323056 + MER112 DNA MER1_type 157 256 -4 330 277 106 8 chr12 5959746 5959927 -138322562 + MIR SINE MIR 62 262 0 182 288 38 25 chr12 5960504 5960584 -138321905 + MIR SINE MIR 63 143 -65 261 244 12 24 chr12 5961412 5961494 -138320995 - MIR3 SINE MIR -29 179 99 218 32 32 0 chr12 5962631 5962662 -138319827 + (TC)n Simple_repeat Simple_repeat 2 33 0 241 236 197 8 chr12 5963493 5963620 -138318869 + L2 LINE L2 3159 3309 -4 2011 171 32 6 chr12 5966357 5966696 -138315793 - MER7A DNA MER2_type 0 346 1 315 288 48 16 chr12 5967833 5967958 -138314531 - MIR SINE MIR -34 228 100 1078 213 4 30 chr12 5969768 5969998 -138312491 - MER58A DNA MER1_type 0 224 1 321 280 119 42 chr12 5970473 5970709 -138311780 + L2 LINE L2 2606 2859 -455 399 233 11 116 chr12 5971073 5971262 -138311227 + MIR SINE MIR 93 261 -1 401 311 102 0 chr12 5971361 5971528 -138310961 + MIR3 SINE MIR 25 208 0 316 368 42 58 chr12 5973684 5974062 -138308427 + L2 LINE L2 2897 3268 -4 2649 49 0 0 chr12 5974313 5974617 -138307872 + AluY SINE Alu 1 304 -7 283 338 49 21 chr12 5975821 5975963 -138306526 - L2 LINE L2 0 3272 3127 223 286 170 20 chr12 5977542 5977689 -138304800 - L3 LINE CR1 -6 1571 1403 254 294 109 50 chr12 5978065 5978184 -138304305 - L2 LINE L2 -1 3271 3146 228 275 43 14 chr12 5979373 5979442 -138303047 + MIR SINE MIR 52 122 -86 269 275 30 46 chr12 5979769 5979900 -138302589 - MIR3 SINE MIR -45 163 35 310 273 13 0 chr12 5980240 5980317 -138302172 + GA-rich Low_complexity Low_complexity 1 78 0 1582 67 91 0 chr12 5981051 5981260 -138301229 - MER30 DNA MER1_type 0 230 3 1526 242 116 21 chr12 5981750 5981842 -138300647 - LTR48B LTR ERV1 0 644 562 2157 83 35 3 chr12 5981842 5982131 -138300358 + AluSq SINE Alu 1 298 -15 1526 242 116 21 chr12 5982131 5982554 -138299935 - LTR48B LTR ERV1 -82 562 80 332 216 41 41 chr12 5982600 5982697 -138299792 - MER34 LTR ERV1 -445 97 1 225 227 91 23 chr12 5982697 5982785 -138299704 + L2 LINE L2 3133 3226 -46 189 318 84 9 chr12 5983138 5983245 -138299244 - L2 LINE L2 -3 3310 3196 229 325 53 30 chr12 5983519 5983688 -138298801 - L2 LINE L2 -565 2749 2577 420 287 43 37 chr12 5984626 5984790 -138297699 - MIR SINE MIR -50 212 48 184 129 0 0 chr12 5985202 5985233 -138297256 + L2 LINE L2 3238 3268 -4 1792 177 0 6 chr12 5985491 5985802 -138296687 + AluJb SINE Alu 1 309 -3 201 312 26 13 chr12 5985887 5985964 -138296525 - L3 LINE CR1 -14 1563 1486 1771 174 24 10 chr12 5986134 5986304 -138296185 - AluJo SINE Alu -10 302 125 240 35 0 0 chr12 5986304 5986333 -138296156 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1771 174 24 10 chr12 5986333 5986460 -138296029 - AluJo SINE Alu -187 125 1 249 274 55 14 chr12 5986462 5986535 -138295954 - L2 LINE L2 -26 3246 3171 336 306 100 12 chr12 5986877 5987047 -138295442 + L1ME LINE L1 5512 5696 -425 551 134 0 0 chr12 5987050 5987132 -138295357 + AluJ/FLAM SINE Alu 21 102 -210 485 249 83 83 chr12 5987804 5988009 -138294480 - MIR SINE MIR -38 224 20 3013 107 30 0 chr12 5988034 5988474 -138294015 - L1PA13 LINE L1 0 6163 5711 2011 143 7 0 chr12 5989296 5989590 -138292899 - AluSx SINE Alu -13 299 4 181 319 208 0 chr12 5990110 5990254 -138292235 - MIR3 SINE MIR -29 179 6 1328 202 90 42 chr12 5991026 5991383 -138291106 + MLT1A2 LTR MaLR 1 374 0 327 276 39 24 chr12 5991405 5991532 -138290957 + MIR SINE MIR 134 262 0 391 78 0 31 chr12 5991611 5991675 -138290814 + MADE1 DNA Mariner 19 80 0 184 291 79 63 chr12 5991699 5991826 -138290663 - L3 LINE CR1 -3 1574 1446 407 339 58 5 chr12 5991959 5992183 -138290306 + MIR SINE MIR 5 240 -22 460 307 126 53 chr12 5992611 5993041 -138289448 + HAL1 LINE L1 4 464 -2043 1996 259 75 37 chr12 5993055 5993194 -138289295 + HAL1 LINE L1 1074 1206 -1301 1785 172 0 14 chr12 5993194 5993491 -138288998 - AluJb SINE Alu -19 293 1 1996 259 75 37 chr12 5993491 5994193 -138288296 + HAL1 LINE L1 1206 1947 -560 2526 68 0 0 chr12 5994601 5994908 -138287581 + AluY SINE Alu 1 307 -4 554 343 82 8 chr12 5994974 5995214 -138287275 - L2 LINE L2 -695 2619 2341 210 37 0 0 chr12 5995214 5995241 -138287248 + (GGA)n Simple_repeat Simple_repeat 2 28 0 554 343 82 8 chr12 5995241 5995367 -138287122 - L2 LINE L2 -973 2341 2226 21 0 0 0 chr12 5995675 5995696 -138286793 + AT_rich Low_complexity Low_complexity 1 21 0 718 277 100 31 chr12 5997236 5997626 -138284863 - MER113 DNA MER1_type? -104 417 1 212 314 0 0 chr12 5997693 5997744 -138284745 + (CA)n Simple_repeat Simple_repeat 2 52 0 250 304 126 33 chr12 5997869 5998083 -138284406 + MARNA DNA Mariner 175 408 -178 280 222 48 0 chr12 5998397 5998460 -138284029 - MIR SINE MIR -158 104 39 3645 126 8 4 chr12 5998465 5998990 -138283499 + MER1A DNA MER1_type 1 527 0 236 279 58 19 chr12 5999468 5999572 -138282917 - MIR3 SINE MIR -11 197 90 483 156 31 4 chr12 6000804 6001042 -138281447 + (TA)n Simple_repeat Simple_repeat 1 244 0 621 203 6 0 chr12 6001055 6001405 -138281084 + (TA)n Simple_repeat Simple_repeat 1 352 0 417 170 29 6 chr12 6001416 6001587 -138280902 + (TA)n Simple_repeat Simple_repeat 1 175 0 236 176 0 39 chr12 6001622 6001673 -138280816 + LTR66 LTR ERVL 391 439 -171 375 23 0 0 chr12 6001754 6001798 -138280691 + (CA)n Simple_repeat Simple_repeat 1 44 0 2154 112 7 3 chr12 6001910 6002206 -138280283 - AluSg SINE Alu -13 297 1 376 269 59 59 chr12 6002414 6002600 -138279889 + LTR67 LTR ERVL 363 548 -9 255 220 100 60 chr12 6003307 6003407 -138279082 + MIR SINE MIR 18 121 -141 219 69 0 0 chr12 6004152 6004181 -138278308 + (TG)n Simple_repeat Simple_repeat 1 29 0 1053 260 136 68 chr12 6005152 6005798 -138276691 + MER21B LTR ERV1 24 713 -150 1521 211 40 3 chr12 6007093 6007443 -138275046 - MLT1A1 LTR MaLR -2 363 1 347 291 36 0 chr12 6007786 6007951 -138274538 + (CACAC)n Simple_repeat Simple_repeat 5 175 0 345 319 34 15 chr12 6008000 6008526 -138273963 + (CACAC)n Simple_repeat Simple_repeat 1 535 0 724 301 99 17 chr12 6008879 6009224 -138273265 - LTR16C LTR ERVL -30 461 89 464 272 50 28 chr12 6009358 6009538 -138272951 - MIR SINE MIR -65 197 14 229 169 138 15 chr12 6010391 6010414 -138272075 - REP3 LTR ERV -359 203 173 411 240 208 42 chr12 6010414 6010606 -138271883 + MLT1J2 LTR MaLR 4 227 -223 201 74 0 0 chr12 6012213 6012240 -138270249 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 240 228 0 0 chr12 6012744 6012801 -138269688 + GA-rich Low_complexity Low_complexity 2 58 0 1844 155 30 0 chr12 6013628 6013931 -138268558 + AluSx SINE Alu 1 312 0 309 109 0 0 chr12 6015182 6015237 -138267252 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 199 222 22 0 chr12 6015276 6015321 -138267168 - MIR SINE MIR -16 246 201 578 302 105 70 chr12 6015561 6016498 -138265991 - L2 LINE L2 -6 3307 2335 255 270 250 0 chr12 6016765 6016865 -138265624 + MIR SINE MIR 19 143 -65 1538 174 0 24 chr12 6018748 6019036 -138263453 + AluJo SINE Alu 1 281 -31 702 246 23 17 chr12 6019425 6019600 -138262889 + MIR SINE MIR 63 238 -24 236 247 0 25 chr12 6019607 6019688 -138262801 + (CGTG)n Simple_repeat Simple_repeat 1 79 0 263 320 191 0 chr12 6019733 6019880 -138262609 + MIR SINE MIR 71 245 -17 256 271 93 86 chr12 6021632 6021772 -138260717 - L2 LINE L2 -7 3265 3125 513 267 103 44 chr12 6021822 6022095 -138260394 + MLT1I LTR MaLR 114 402 -7 546 312 158 6 chr12 6022198 6022528 -138259961 + L2 LINE L2 2929 3308 -5 189 256 23 0 chr12 6023623 6023666 -138258823 + L2 LINE L2 3266 3309 -4 348 253 44 11 chr12 6025815 6025906 -138256583 + L3 LINE CR1 1419 1512 -65 270 0 0 0 chr12 6026537 6026567 -138255922 + (CA)n Simple_repeat Simple_repeat 1 30 0 414 57 0 0 chr12 6027543 6027596 -138254893 + (CA)n Simple_repeat Simple_repeat 2 54 0 262 260 14 14 chr12 6027597 6027670 -138254819 + G-rich Low_complexity Low_complexity 1 73 0 255 61 0 0 chr12 6028277 6028310 -138254179 + (TG)n Simple_repeat Simple_repeat 2 34 0 410 175 48 16 chr12 6028475 6028576 -138253913 + MER5A DNA MER1_type 4 109 -80 254 322 43 26 chr12 6028795 6028910 -138253579 - MIR3 SINE MIR -7 201 85 281 294 46 37 chr12 6028969 6029078 -138253411 - MIR3 SINE MIR -39 169 60 2345 88 0 0 chr12 6029165 6029472 -138253017 - AluY SINE Alu -4 307 1 649 272 160 19 chr12 6030265 6030826 -138251663 - L2 LINE L2 0 3313 2605 7189 52 6 2 chr12 6031361 6032324 -138250165 + L1PA6 LINE L1 5187 6152 -2 359 255 0 11 chr12 6032423 6032517 -138249972 + MER94 DNA DNA 8 100 -34 195 100 0 0 chr12 6032926 6032956 -138249533 + (ATG)n Simple_repeat Simple_repeat 3 32 0 2185 226 181 25 chr12 6032993 6033947 -138248542 + L2 LINE L2 1933 3070 -243 225 0 0 0 chr12 6034001 6034026 -138248463 + (CA)n Simple_repeat Simple_repeat 2 26 0 1748 264 70 27 chr12 6034288 6035346 -138247143 - L1ME3A LINE L1 -315 5838 4722 350 299 84 13 chr12 6035407 6035561 -138246928 - L1ME3A LINE L1 -4373 1937 1773 782 308 61 17 chr12 6035573 6036222 -138246267 - L1ME3A LINE L1 -4585 1725 957 848 103 0 0 chr12 6036223 6036339 -138246150 + AluSg/x SINE Alu 178 293 -17 234 62 0 0 chr12 6036352 6036384 -138246105 + (TG)n Simple_repeat Simple_repeat 2 33 0 214 235 12 24 chr12 6036384 6036469 -138246020 + (TA)n Simple_repeat Simple_repeat 2 85 0 249 304 141 44 chr12 6036572 6036842 -138245647 - L1ME3A LINE L1 -5307 812 517 419 345 55 63 chr12 6036983 6037363 -138245126 - L1ME3A LINE L1 -5739 380 4 438 254 116 7 chr12 6037383 6037521 -138244968 + L2 LINE L2 3160 3312 -1 250 226 151 21 chr12 6037680 6037773 -138244716 + MIR3 SINE MIR 87 191 -17 346 328 9 26 chr12 6038980 6039096 -138243393 + MIR SINE MIR 50 163 -99 243 284 125 97 chr12 6039544 6039720 -138242769 + MIR SINE MIR 62 242 -20 221 360 88 8 chr12 6039925 6040050 -138242439 - L2 LINE L2 -5 3267 3133 1751 120 11 35 chr12 6040562 6040714 -138241775 - AluSc SINE Alu -32 277 134 285 98 0 0 chr12 6040714 6040755 -138241734 + (TG)n Simple_repeat Simple_repeat 2 42 0 1751 120 11 35 chr12 6040755 6040886 -138241603 - AluSc SINE Alu -175 134 1 252 292 67 8 chr12 6041043 6041163 -138241326 - L2 LINE L2 -7 3265 3139 351 297 93 17 chr12 6041654 6041772 -138240717 + MIR SINE MIR 18 144 -64 237 267 46 61 chr12 6041889 6042020 -138240469 + MIR SINE MIR 109 237 -25 1046 168 0 5 chr12 6042346 6042531 -138239958 - FRAM SINE Alu 0 176 1 3102 214 17 12 chr12 6042532 6043186 -138239303 - L1ME1 LINE L1 -8 6158 5502 2769 143 49 92 chr12 6043196 6043803 -138238686 - L1MC3 LINE L1 -7 7778 7198 393 177 57 12 chr12 6043803 6043898 -138238591 - MLT1F1 LTR MaLR -442 125 35 298 292 88 40 chr12 6044310 6044536 -138237953 + MIR SINE MIR 26 262 0 393 375 73 30 chr12 6044542 6044870 -138237619 - L2 LINE L2 -5 3267 2926 196 344 57 13 chr12 6045054 6045211 -138237278 - MIR3 SINE MIR -5 203 40 337 340 111 34 chr12 6045873 6046261 -138236228 + L2 LINE L2 1182 1599 -1715 794 185 12 56 chr12 6046278 6046440 -138236049 - MER5A DNA MER1_type -5 184 30 455 313 82 10 chr12 6046528 6046723 -138235766 - MIR SINE MIR 0 262 54 297 326 73 22 chr12 6046894 6047072 -138235417 - L2 LINE L2 -1354 1960 1774 565 292 97 38 chr12 6047124 6047412 -138235077 + L2 LINE L2 2196 2500 -814 221 292 212 26 chr12 6047545 6047658 -138234831 + L2 LINE L2 3136 3269 -3 324 125 0 62 chr12 6048431 6048495 -138233994 - Alu SINE Alu 0 302 243 810 275 12 33 chr12 6049068 6049312 -138233177 + MIR SINE MIR 23 261 -1 552 175 19 0 chr12 6049312 6049472 -138233017 + (CAT)n Simple_repeat Simple_repeat 1 163 0 859 154 0 17 chr12 6049514 6049868 -138232621 + (CAT)n Simple_repeat Simple_repeat 1 347 0 187 300 67 56 chr12 6050886 6050976 -138231513 + MIR3 SINE MIR 69 159 -49 376 94 0 19 chr12 6051002 6051055 -138231434 + Tigger5 DNA MER2_type 1 52 -2271 422 207 12 0 chr12 6051070 6051152 -138231337 + Tigger5 DNA MER2_type 2239 2321 -2 463 356 62 6 chr12 6051224 6051625 -138230864 + L2 LINE L2 2762 3219 -94 229 287 161 35 chr12 6052168 6052342 -138230147 - L3b LINE CR1 -208 1375 1180 375 233 63 63 chr12 6052597 6052756 -138229733 - MER5A DNA MER1_type 0 189 31 204 385 28 18 chr12 6053720 6053829 -138228660 + L3b LINE CR1 1275 1384 -199 206 313 30 0 chr12 6055019 6055086 -138227403 + (CATG)n Simple_repeat Simple_repeat 2 70 0 807 183 0 0 chr12 6055167 6055347 -138227142 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 597 286 25 37 chr12 6055361 6055602 -138226887 - MIR SINE MIR -12 250 13 189 0 0 0 chr12 6056648 6056669 -138225820 + (CCCCCA)n Simple_repeat Simple_repeat 4 24 0 1713 248 82 19 chr12 6057717 6058181 -138224308 + MER77 LTR ERV1 77 569 -36 8567 137 16 1 chr12 6058486 6060624 -138221865 - L1PA10 LINE L1 -9 6159 4002 284 307 58 14 chr12 6061020 6061159 -138221330 + MIR SINE MIR 17 159 -69 275 254 0 0 chr12 6061216 6061271 -138221218 - L2 LINE L2 -8 3264 3210 198 180 0 66 chr12 6061354 6061415 -138221074 + L3 LINE CR1 698 754 -823 338 274 53 79 chr12 6061440 6061468 -138221021 - MIR SINE MIR -44 218 191 1526 181 10 36 chr12 6061468 6061777 -138220712 - AluJo SINE Alu -11 301 1 338 274 53 79 chr12 6061777 6061938 -138220551 - MIR SINE MIR -71 191 34 192 40 0 0 chr12 6062452 6062477 -138220012 + (TG)n Simple_repeat Simple_repeat 1 25 0 267 215 0 0 chr12 6063518 6063583 -138218906 + (TG)n Simple_repeat Simple_repeat 1 65 0 308 321 36 14 chr12 6063673 6063813 -138218676 + L3 LINE CR1 235 377 -1200 387 247 113 57 chr12 6063868 6064115 -138218374 - L1MC4a LINE L1 -1642 6166 5906 203 250 125 0 chr12 6064126 6064190 -138218299 + L3 LINE CR1 439 510 -1067 225 140 0 123 chr12 6064507 6064564 -138217925 + L2 LINE L2 3262 3311 -2 513 287 160 0 chr12 6065641 6065829 -138216660 + MIR SINE MIR 42 259 -3 244 229 186 0 chr12 6065944 6066014 -138216475 + L2 LINE L2 3190 3272 -41 222 118 0 0 chr12 6066031 6066065 -138216424 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 334 240 140 0 chr12 6066622 6066722 -138215767 + MIR SINE MIR 33 146 -62 292 266 180 47 chr12 6067353 6067586 -138214903 + L1ME4a LINE L1 5856 6119 -2 2109 138 0 0 chr12 6067709 6068020 -138214469 + AluSx SINE Alu 1 311 -1 1500 325 168 21 chr12 6069549 6070044 -138212445 + L3 LINE CR1 506 927 -650 6571 89 9 3 chr12 6070044 6071253 -138211236 + L1PA11 LINE L1 4961 6174 0 1500 325 168 21 chr12 6071253 6071686 -138210803 + L3 LINE CR1 927 1570 -7 299 273 47 47 chr12 6072163 6072291 -138210198 + MIR3 SINE MIR 78 205 -3 384 97 0 0 chr12 6073251 6073313 -138209176 + (TC)n Simple_repeat Simple_repeat 1 62 0 283 306 153 0 chr12 6075242 6075353 -138207136 - L2 LINE L2 -8 3264 3137 391 274 174 28 chr12 6075770 6075982 -138206507 + MIR SINE MIR 7 249 -13 1595 169 36 10 chr12 6076440 6076742 -138205747 + AluJb SINE Alu 1 310 -2 230 247 195 0 chr12 6077329 6077406 -138205083 - L2 LINE L2 -14 3299 3208 317 360 95 16 chr12 6078246 6078488 -138204001 + L3b LINE CR1 1262 1522 -61 284 301 27 70 chr12 6078656 6078842 -138203647 - MIR SINE MIR -57 205 28 180 0 0 0 chr12 6079748 6079768 -138202721 + (T)n Simple_repeat Simple_repeat 1 20 0 259 224 0 0 chr12 6080735 6080784 -138201705 + L2 LINE L2 3251 3299 -14 1058 289 109 63 chr12 6081833 6081985 -138200504 - L2 LINE L2 -6 3307 3163 2358 94 0 0 chr12 6081985 6082294 -138200195 + AluSg SINE Alu 1 309 -1 1058 289 109 63 chr12 6082294 6082559 -138199930 - L2 LINE L2 -150 3163 2912 1838 137 14 7 chr12 6082559 6082851 -138199638 + AluSx SINE Alu 1 294 -18 1058 289 109 63 chr12 6082851 6083255 -138199234 - L2 LINE L2 -401 2912 2440 2167 285 123 9 chr12 6083842 6085042 -138197447 + L2 LINE L2 1950 3296 -17 318 26 0 0 chr12 6085183 6085222 -138197267 + (GA)n Simple_repeat Simple_repeat 2 40 0 203 257 29 0 chr12 6085229 6085299 -138197190 + GA-rich Low_complexity Low_complexity 2 73 0 373 267 125 8 chr12 6085449 6085569 -138196920 + MIR3 SINE MIR 40 173 -35 243 0 0 0 chr12 6085672 6085699 -138196790 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 707 279 59 28 chr12 6085727 6085972 -138196517 + MIR SINE MIR 3 251 -11 575 271 30 96 chr12 6086191 6086494 -138195995 + L1M4 LINE L1 2610 2892 -3254 2042 123 0 0 chr12 6086496 6086789 -138195700 + AluSx SINE Alu 1 293 -19 409 183 0 0 chr12 6086847 6086918 -138195571 + L2 LINE L2 3207 3277 -36 1273 311 75 23 chr12 6087004 6088089 -138194400 + L1M4 LINE L1 3047 4187 -1959 2167 110 3 0 chr12 6088089 6088398 -138194091 + AluY SINE Alu 1 310 -1 25719 72 6 0 chr12 6088410 6091695 -138190794 + L1P LINE L1 5 3307 -2839 228 208 21 0 chr12 6091695 6091743 -138190746 - Alu SINE Alu -221 82 34 194 310 80 18 chr12 6091849 6091962 -138190527 + L2 LINE L2 2133 2252 -1062 434 96 108 12 chr12 6092025 6092108 -138190381 - Alu SINE Alu -6 304 214 223 393 74 0 chr12 6092687 6092822 -138189667 + L2 LINE L2 2920 3064 -208 27 0 0 0 chr12 6092956 6092983 -138189506 + AT_rich Low_complexity Low_complexity 1 27 0 352 317 42 0 chr12 6093089 6093231 -138189258 + L1ME3A LINE L1 2539 2686 -3460 507 218 174 3 chr12 6093290 6093520 -138188969 + L1P4 LINE L1 5171 5431 -735 293 303 57 14 chr12 6093537 6093748 -138188741 + L1ME3A LINE L1 4942 5161 -985 * 787 305 79 16 chr12 6093735 6094230 -138188259 + L1ME3A LINE L1 5425 5950 -220 1822 129 6 39 chr12 6094472 6094783 -138187706 - AluJo SINE Alu -10 302 2 206 274 9 151 chr12 6094858 6094964 -138187525 - L3 LINE CR1 -59 1518 1428 292 276 71 39 chr12 6095463 6095590 -138186899 - L3 LINE CR1 -143 1434 1304 285 29 0 0 chr12 6095626 6095660 -138186829 + (TG)n Simple_repeat Simple_repeat 2 35 0 180 186 29 43 chr12 6096216 6096286 -138186203 + GA-rich Low_complexity Low_complexity 5 73 0 1548 248 46 37 chr12 6097137 6097732 -138184757 + L2 LINE L2 2704 3300 -13 267 316 0 11 chr12 6097740 6097835 -138184654 - MIR SINE MIR -102 160 67 262 299 46 11 chr12 6097853 6097940 -138184549 + MIR SINE MIR 32 121 -87 1859 142 75 33 chr12 6097961 6098321 -138184168 + THE1C LTR MaLR 1 375 0 875 298 182 26 chr12 6098820 6099391 -138183098 + L2 LINE L2 2185 2844 -470 617 278 139 22 chr12 6099478 6099701 -138182788 + MIR SINE MIR 6 254 -8 626 288 77 77 chr12 6099712 6100011 -138182478 + L2 LINE L2 2970 3268 -4 560 289 66 53 chr12 6100125 6100353 -138182136 + MLT1J LTR MaLR 6 236 -275 2328 170 31 24 chr12 6101763 6101817 -138180672 + MSTB LTR MaLR 1 53 -373 2480 37 10 0 chr12 6101817 6102112 -138180377 + AluY SINE Alu 1 298 -13 2328 170 31 24 chr12 6102112 6102480 -138180009 + MSTB LTR MaLR 53 426 0 1406 226 133 38 chr12 6103164 6103607 -138178882 + MLT1D LTR MaLR 21 505 0 632 310 99 48 chr12 6103618 6104229 -138178260 - L2 LINE L2 -201 3071 2430 272 198 0 37 chr12 6105552 6105633 -138176856 + CT-rich Low_complexity Low_complexity 5 82 0 328 389 7 0 chr12 6106853 6106997 -138175492 + L1ME4a LINE L1 5779 5923 -198 236 294 56 16 chr12 6107004 6107130 -138175359 + L1ME4a LINE L1 5991 6121 0 736 277 121 51 chr12 6109609 6110039 -138172450 + LTR33A LTR ERVL 64 523 0 1254 241 60 52 chr12 6110114 6110232 -138172257 + LTR16C LTR ERVL 67 183 -308 180 97 0 0 chr12 6110232 6110263 -138172226 + (CA)n Simple_repeat Simple_repeat 2 32 0 1254 241 60 52 chr12 6110263 6110320 -138172169 + LTR16C LTR ERVL 183 238 -253 1541 227 13 37 chr12 6110320 6110694 -138171795 + MLT1A1 LTR MaLR 1 365 0 1254 241 60 52 chr12 6110694 6110936 -138171553 + LTR16C LTR ERVL 238 488 -3 1834 135 0 13 chr12 6112437 6112741 -138169748 - AluJo SINE Alu -8 304 5 351 68 0 0 chr12 6112700 6112744 -138169745 - Alu SINE Alu -256 45 2 2278 216 61 22 chr12 6112766 6113162 -138169327 - MER119 DNA MER1_type -5 578 152 2490 62 7 3 chr12 6113162 6113469 -138169020 + AluY SINE Alu 1 308 -3 2278 216 61 22 chr12 6113469 6113627 -138168862 - MER119 DNA MER1_type -431 152 2 186 43 0 0 chr12 6113887 6113910 -138168579 + (CAA)n Simple_repeat Simple_repeat 2 24 0 278 175 12 0 chr12 6116035 6116115 -138166374 + (CA)n Simple_repeat Simple_repeat 1 81 0 837 266 192 16 chr12 6116394 6116826 -138165663 + LTR33A LTR ERVL 8 515 -8 585 221 207 9 chr12 6117425 6117638 -138164851 + MIR SINE MIR 8 262 0 2405 146 53 27 chr12 6118002 6118413 -138164076 + MSTA LTR MaLR 1 422 -6 399 198 0 99 chr12 6118471 6118572 -138163917 + L1MB8 LINE L1 4018 4108 -2038 1325 83 0 0 chr12 6118573 6118741 -138163748 - AluY SINE Alu -10 301 134 2475 73 0 0 chr12 6118742 6119043 -138163446 - AluY SINE Alu -10 301 1 5196 180 50 39 chr12 6119043 6121034 -138161455 + L1MB8 LINE L1 4099 6110 -68 332 151 21 54 chr12 6121114 6121207 -138161282 + L1MB8 LINE L1 6089 6178 0 352 309 9 9 chr12 6121245 6121355 -138161134 + MIR SINE MIR 16 125 -83 670 255 121 35 chr12 6122888 6123119 -138159370 + MIR SINE MIR 4 254 -8 345 267 84 0 chr12 6125055 6125186 -138157303 - MER103 DNA DNA -2 164 23 2331 106 0 6 chr12 6125576 6125887 -138156602 - AluSx SINE Alu -3 309 1 679 308 145 23 chr12 6126348 6126783 -138155706 - L2 LINE L2 -9 3304 2817 306 0 0 0 chr12 6130534 6130568 -138151921 + (CA)n Simple_repeat Simple_repeat 2 35 0 283 400 7 0 chr12 6130759 6130909 -138151580 + L2 LINE L2 2554 2704 -610 311 305 93 68 chr12 6131382 6131661 -138150828 - L2 LINE L2 -23 3249 2964 558 244 58 6 chr12 6132618 6132774 -138149715 - MIR SINE MIR -19 243 80 214 255 75 47 chr12 6132801 6132907 -138149582 - MIR SINE MIR -143 119 11 270 56 0 0 chr12 6134410 6134446 -138148043 + (TG)n Simple_repeat Simple_repeat 2 37 0 261 292 45 0 chr12 6134645 6134734 -138147755 + MIR SINE MIR 26 118 -90 611 220 31 31 chr12 6137994 6138153 -138144336 + L1MD2 LINE L1 6199 6357 -2 427 232 33 132 chr12 6138529 6138801 -138143688 + MER112 DNA MER1_type 8 252 -8 267 322 0 0 chr12 6138880 6138970 -138143519 + (TG)n Simple_repeat Simple_repeat 1 90 0 195 239 0 0 chr12 6138995 6139062 -138143427 + (TG)n Simple_repeat Simple_repeat 1 67 0 378 327 16 60 chr12 6139409 6139660 -138142829 + MIR SINE MIR 20 259 -3 201 178 22 22 chr12 6139763 6139808 -138142681 + CT-rich Low_complexity Low_complexity 2 46 0 186 71 0 0 chr12 6139808 6139836 -138142653 + (A)n Simple_repeat Simple_repeat 1 28 0 334 215 0 0 chr12 6140492 6140557 -138141932 + MLT1K LTR MaLR 511 575 -13 323 283 243 0 chr12 6140688 6140840 -138141649 - MIR SINE MIR -6 256 68 1772 150 7 29 chr12 6140856 6141162 -138141327 - AluJo SINE Alu -3 309 11 399 182 34 0 chr12 6142384 6142472 -138140017 + L1ME4a LINE L1 5965 6055 -66 * 5416 164 29 41 chr12 6142467 6143902 -138138587 - L1MA10 LINE L1 -2 6220 4788 297 167 0 6 chr12 6143902 6143960 -138138529 - L1MA10 LINE L1 -1579 4455 4400 1142 89 0 13 chr12 6143963 6144120 -138138369 - MER4C LTR ERV1 0 465 311 2482 77 28 25 chr12 6144120 6144473 -138138016 - MER4C LTR ERV1 -111 354 1 5980 229 61 48 chr12 6144473 6146290 -138136199 - L1MA10 LINE L1 -1636 4398 2606 3454 45 0 0 chr12 6146290 6146742 -138135747 - L1PA5 LINE L1 0 6154 5756 5980 229 61 48 chr12 6146742 6148175 -138134314 - L1MA10 LINE L1 -3428 2606 3 3413 250 116 52 chr12 6148535 6149916 -138132573 + L1ME3A LINE L1 18 1486 -4937 1285 269 35 59 chr12 6149917 6150358 -138132131 + L1ME3A LINE L1 1875 2292 -4830 2394 143 0 15 chr12 6150358 6150700 -138131789 + MER1B DNA MER1_type 1 337 0 1285 269 35 59 chr12 6150700 6151000 -138131489 + L1ME3A LINE L1 2292 2598 -4524 424 262 6 38 chr12 6151380 6151563 -138130926 + MER31-int LTR ERV1 973 1149 -5182 180 0 0 0 chr12 6151996 6152016 -138130473 + (A)n Simple_repeat Simple_repeat 1 20 0 347 196 14 98 chr12 6152193 6152336 -138130153 + LTR57-int LTR ERVL 622 752 -4591 * 917 209 42 58 chr12 6152278 6152818 -138129671 + MER31-int LTR ERV1 834 2028 -2843 * 923 232 21 64 chr12 6152711 6152991 -138129498 + LTR57-int LTR ERVL 1225 1492 -3851 687 202 65 85 chr12 6153077 6153325 -138129164 + MER31-int LTR ERV1 1737 1979 -2957 * 2192 195 68 102 chr12 6153324 6154369 -138128120 + MER31-int LTR ERV1 3455 4463 -1868 396 214 22 0 chr12 6154369 6154458 -138128031 + MER34B LTR ERV1 470 560 -5 1443 232 129 7 chr12 6154467 6154915 -138127574 + L1ME3A LINE L1 3612 4114 -2827 323 171 53 40 chr12 6155119 6155195 -138127294 - MIR SINE MIR -122 140 64 724 266 65 12 chr12 6155247 6155495 -138126994 - MIR SINE MIR 0 262 2 238 219 0 16 chr12 6156027 6156091 -138126398 + GA-rich Low_complexity Low_complexity 2 64 0 642 245 75 75 chr12 6156120 6156373 -138126116 - MER102a DNA MER1_type -4 326 74 269 314 89 32 chr12 6156440 6156564 -138125925 + MIR SINE MIR 4 134 -128 3115 261 60 10 chr12 6156659 6157621 -138124868 + L1ME3A LINE L1 5941 6948 -17 278 298 32 11 chr12 6158448 6158542 -138123947 - MIR SINE MIR -10 252 157 417 272 48 34 chr12 6160769 6160916 -138121573 - MER91A DNA MER1_type -45 151 3 384 286 48 48 chr12 6160928 6161075 -138121414 - MIR SINE MIR -111 151 5 1267 265 170 18 chr12 6161246 6162136 -138120353 + L2 LINE L2 2272 3311 -2 404 309 44 19 chr12 6162139 6162293 -138120196 - MIR SINE MIR -75 133 25 2056 120 45 0 chr12 6162435 6162727 -138119762 + AluSq SINE Alu 1 305 -8 891 241 191 26 chr12 6163859 6164199 -138118290 + LTR33 LTR ERVL 31 426 -95 298 319 44 67 chr12 6164278 6164413 -138118076 - MIR3 SINE MIR -32 176 45 252 237 105 13 chr12 6164420 6164496 -138117993 + MIR SINE MIR 179 261 -1 544 224 26 9 chr12 6164692 6164808 -138117681 - MER91A DNA MER1_type -78 118 1 1413 178 10 40 chr12 6165110 6165413 -138117076 + AluJb SINE Alu 1 294 -18 478 291 166 0 chr12 6165894 6166093 -138116396 - MIR SINE MIR -10 252 21 2204 56 0 0 chr12 6166399 6166665 -138115824 - AluY SINE Alu -12 299 34 189 344 76 8 chr12 6167168 6167299 -138115190 - MIR3 SINE MIR -48 160 21 307 262 97 10 chr12 6168890 6168993 -138113496 + L3b LINE CR1 1268 1379 -204 571 256 70 92 chr12 6169057 6169284 -138113205 - MIR SINE MIR -7 255 34 192 125 0 0 chr12 6169370 6169402 -138113087 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 577 251 29 0 chr12 6169439 6169614 -138112875 + MER104 DNA MER2_type 1 180 0 202 347 40 0 chr12 6169822 6169897 -138112592 + L2 LINE L2 3182 3259 -54 202 239 56 84 chr12 6169990 6170061 -138112428 + L3b LINE CR1 1506 1574 -9 2353 211 42 72 chr12 6170445 6171255 -138111234 + L1MC4 LINE L1 7221 8006 -36 2567 233 46 10 chr12 6172705 6173432 -138109057 - L1MEc LINE L1 -3312 2903 2184 341 269 92 8 chr12 6173457 6173587 -138108902 - L1MEc LINE L1 -6216 180 40 181 311 33 16 chr12 6173594 6173655 -138108834 + MER5A DNA MER1_type 128 189 0 870 266 125 37 chr12 6173888 6174297 -138108192 - L3 LINE CR1 -461 1116 672 275 316 0 0 chr12 6174634 6174713 -138107776 + MIR SINE MIR 58 136 -72 436 338 91 60 chr12 6174951 6175401 -138107088 + L2 LINE L2 2807 3270 -2 330 98 0 0 chr12 6176594 6176645 -138105844 + (CA)n Simple_repeat Simple_repeat 2 52 0 276 231 64 26 chr12 6177166 6177244 -138105245 - MIR3 SINE MIR -7 201 121 210 362 0 0 chr12 6177443 6177501 -138104988 + MIR3 SINE MIR 135 192 -16 341 306 244 10 chr12 6177679 6177872 -138104617 + MIR SINE MIR 3 240 -22 223 341 24 0 chr12 6178233 6178318 -138104171 + L2 LINE L2 2737 2823 -491 696 248 105 19 chr12 6178395 6178605 -138103884 + MIR SINE MIR 35 262 0 317 254 18 5 chr12 6178927 6179020 -138103469 + MLT1I LTR MaLR 72 203 -264 287 210 0 0 chr12 6179301 6179363 -138103126 - MER94 DNA DNA -60 74 13 395 253 0 0 chr12 6179382 6179457 -138103032 + L2 LINE L2 3179 3253 -19 2251 97 7 0 chr12 6179487 6179796 -138102693 - AluSx SINE Alu -1 311 1 500 232 101 7 chr12 6182554 6182692 -138099797 + MIR SINE MIR 32 182 -80 36 82 0 0 chr12 6182870 6182955 -138099534 + AT_rich Low_complexity Low_complexity 1 85 0 367 285 62 41 chr12 6182991 6183164 -138099325 - MIR SINE MIR -61 147 20 709 306 61 66 chr12 6183899 6184291 -138098198 + L3 LINE CR1 1123 1512 -65 182 280 67 73 chr12 6184472 6184622 -138097867 + MIR SINE MIR 4 152 -110 199 250 0 125 chr12 6185464 6185544 -138096945 + L2 LINE L2 3001 3070 -202 473 204 2 18 chr12 6187063 6187516 -138094973 + (CA)n Simple_repeat Simple_repeat 1 445 0 316 292 26 39 chr12 6189601 6189755 -138092734 - MIR3 SINE MIR -35 173 22 3035 247 123 25 chr12 6190806 6192130 -138090359 - L2 LINE L2 0 3313 1854 256 283 38 38 chr12 6194117 6194223 -138088266 + MIR SINE MIR 42 147 -61 289 295 66 25 chr12 6196562 6196684 -138085805 + MIR SINE MIR 20 146 -116 24 0 0 0 chr12 6197726 6197750 -138084739 + AT_rich Low_complexity Low_complexity 1 24 0 816 188 96 14 chr12 6198797 6199015 -138083474 + Charlie1 DNA MER1_type 1 236 -2525 585 220 38 8 chr12 6199002 6199134 -138083355 + Charlie1 DNA MER1_type 2621 2756 -5 * 559 226 8 0 chr12 6202993 6203240 -138079249 + G-rich Low_complexity Low_complexity 1 249 0 705 143 5 53 chr12 6203244 6203433 -138079056 + GA-rich Low_complexity Low_complexity 1 180 0 299 68 0 23 chr12 6203436 6203480 -138079009 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 219 246 0 0 chr12 6203486 6203543 -138078946 + A-rich Low_complexity Low_complexity 1 57 0 * 524 153 16 44 chr12 6203541 6203724 -138078765 + GA-rich Low_complexity Low_complexity 3 180 0 774 153 23 11 chr12 6203745 6203921 -138078568 + GA-rich Low_complexity Low_complexity 3 180 0 401 152 18 36 chr12 6203933 6204045 -138078444 + GA-rich Low_complexity Low_complexity 3 112 0 431 329 7 14 chr12 6204311 6204454 -138078035 - MER5A DNA MER1_type -13 176 35 213 292 34 11 chr12 6204636 6204725 -138077764 + MIR SINE MIR 48 138 -70 509 291 37 32 chr12 6204744 6204933 -138077556 - MIR3 SINE MIR 0 208 19 513 276 65 35 chr12 6205092 6205291 -138077198 + LTR33 LTR ERVL 314 518 -3 1040 255 77 20 chr12 6205325 6205678 -138076811 + L2 LINE L2 2941 3313 0 235 314 116 0 chr12 6205764 6205850 -138076639 + MIR SINE MIR 21 116 -92 313 250 170 0 chr12 6207518 6207618 -138074871 + MIR SINE MIR 34 150 -112 439 348 25 6 chr12 6207753 6207914 -138074575 + L2 LINE L2 3102 3265 -7 460 237 90 0 chr12 6208148 6208274 -138074215 - MIR SINE MIR -62 146 58 250 319 115 13 chr12 6208625 6208782 -138073707 - L2 LINE L2 -926 2388 2216 2702 70 123 5 chr12 6209025 6209385 -138073104 + MLT2A1 LTR ERVL 1 414 -30 478 53 13 13 chr12 6209385 6209460 -138073029 + (TA)n Simple_repeat Simple_repeat 2 76 0 2702 70 123 5 chr12 6209460 6209496 -138072993 + MLT2A1 LTR ERVL 414 444 0 4716 49 9 0 chr12 6209496 6210071 -138072418 + HERVL-A1 LTR ERVL 1 580 -5074 * 29763 63 9 5 chr12 6210063 6213704 -138068785 + HERVL-A1 LTR ERVL 765 4420 -1234 2163 80 27 23 chr12 6213704 6214004 -138068485 - THE1A LTR MaLR 0 355 55 291 265 191 37 chr12 6264573 6264762 -138017727 + MIR SINE MIR 31 248 -14 1963 107 0 0 chr12 6264913 6265184 -138017305 + AluSg SINE Alu 37 307 -3 228 289 0 40 chr12 6266841 6266917 -138015572 + L1MC/D LINE L1 5708 5780 -2028 1770 166 0 0 chr12 6266954 6267256 -138015233 + AluJb SINE Alu 1 302 -10 1263 191 36 13 chr12 6267379 6267682 -138014807 + L1MC3 LINE L1 7473 7782 -3 649 173 48 48 chr12 6268234 6268402 -138014087 - MER53 DNA DNA -19 170 3 496 283 40 80 chr12 6268439 6268518 -138013971 - MIR SINE MIR -44 218 137 2009 143 0 3 chr12 6268518 6268826 -138013663 - AluSx SINE Alu -3 309 3 496 283 40 80 chr12 6268826 6268972 -138013517 - MIR SINE MIR -125 137 2 234 266 31 16 chr12 6269315 6269379 -138013110 + L3b LINE CR1 1503 1567 -16 2179 100 0 3 chr12 6269398 6269697 -138012792 - AluSg SINE Alu -12 298 1 317 260 133 87 chr12 6269769 6269919 -138012570 - MIR SINE MIR -1 261 105 * 989 271 89 39 chr12 6269918 6270379 -138012110 - L2 LINE L2 0 3313 2830 2375 68 0 0 chr12 6270658 6270954 -138011535 - AluY SINE Alu -14 297 2 654 152 0 0 chr12 6270988 6271113 -138011376 + (TGGA)n Simple_repeat Simple_repeat 1 125 0 2145 91 0 31 chr12 6271538 6271857 -138010632 + AluY SINE Alu 1 309 -2 207 329 7 20 chr12 6272549 6272701 -138009788 + (CA)n Simple_repeat Simple_repeat 1 150 0 1143 121 0 0 chr12 6273963 6274263 -138008226 + (CA)n Simple_repeat Simple_repeat 1 300 0 475 252 208 6 chr12 6274833 6274992 -138007497 + MIR SINE MIR 37 227 -35 2313 129 151 0 chr12 6275507 6275911 -138006578 + MER4C LTR ERV1 1 465 0 841 322 140 7 chr12 6276801 6277556 -138004933 + L2 LINE L2 2120 2975 -339 381 282 0 28 chr12 6279431 6279612 -138002877 + CT-rich Low_complexity Low_complexity 3 178 0 376 277 0 43 chr12 6279654 6280124 -138002365 + CT-rich Low_complexity Low_complexity 1 449 0 372 274 0 40 chr12 6280147 6280714 -138001775 + CT-rich Low_complexity Low_complexity 1 544 0 378 293 0 28 chr12 6280755 6280936 -138001553 + CT-rich Low_complexity Low_complexity 3 178 0 313 243 0 62 chr12 6280957 6281101 -138001388 + CT-rich Low_complexity Low_complexity 3 137 0 258 297 17 51 chr12 6281325 6281443 -138001046 - L2 LINE L2 -453 2861 2748 271 273 63 98 chr12 6281744 6282154 -138000335 + L2 LINE L2 2466 2861 -453 331 209 0 92 chr12 6282378 6282574 -137999915 + GA-rich Low_complexity Low_complexity 3 180 0 314 313 0 26 chr12 6282617 6282966 -137999523 + GA-rich Low_complexity Low_complexity 1 339 0 393 214 0 73 chr12 6282987 6283179 -137999310 + GA-rich Low_complexity Low_complexity 3 180 0 340 307 0 26 chr12 6283201 6283550 -137998939 + GA-rich Low_complexity Low_complexity 1 339 0 306 320 0 22 chr12 6283594 6283772 -137998717 + GA-rich Low_complexity Low_complexity 4 177 0 300 316 0 26 chr12 6283793 6284142 -137998347 + GA-rich Low_complexity Low_complexity 1 339 0 312 307 0 28 chr12 6284185 6284364 -137998125 + GA-rich Low_complexity Low_complexity 4 177 0 326 302 0 28 chr12 6284407 6284586 -137997903 + GA-rich Low_complexity Low_complexity 4 177 0 314 311 0 28 chr12 6284607 6284787 -137997702 + GA-rich Low_complexity Low_complexity 3 177 0 312 315 0 26 chr12 6284829 6285252 -137997237 + GA-rich Low_complexity Low_complexity 1 411 0 344 300 0 28 chr12 6285273 6285453 -137997036 + GA-rich Low_complexity Low_complexity 3 177 0 344 286 0 33 chr12 6285495 6285677 -137996812 + GA-rich Low_complexity Low_complexity 3 178 0 350 321 81 32 chr12 6285803 6286024 -137996465 + L2 LINE L2 2630 2861 -453 312 297 0 38 chr12 6286248 6286762 -137995727 + GA-rich Low_complexity Low_complexity 1 494 0 354 291 0 28 chr12 6286805 6286984 -137995505 + GA-rich Low_complexity Low_complexity 4 177 0 353 298 0 28 chr12 6287005 6287186 -137995303 + GA-rich Low_complexity Low_complexity 3 178 0 180 320 72 31 chr12 6287885 6287982 -137994507 - L2 LINE L2 -568 2746 2646 228 241 0 0 chr12 6287985 6288043 -137994446 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 198 254 18 91 chr12 6288234 6288344 -137994145 + L2 LINE L2 2901 3002 -270 970 185 16 22 chr12 6288561 6288745 -137993744 - MIR SINE MIR 0 262 80 309 306 0 0 chr12 6289688 6289760 -137992729 + L2 LINE L2 3168 3239 -33 554 214 29 0 chr12 6290230 6290333 -137992156 - MER5B DNA MER1_type -1 177 72 180 200 29 0 chr12 6290329 6290364 -137992125 + MER5B DNA MER1_type 142 177 -1 * 1931 172 26 48 chr12 6290458 6290789 -137991700 - L1M LINE L1 -743 5403 5120 1369 212 38 46 chr12 6290789 6291157 -137991332 + MLT1A1 LTR MaLR 1 365 0 1931 172 26 48 chr12 6291157 6291359 -137991130 - L1M LINE L1 -1026 5120 4915 21 57 0 0 chr12 6291374 6291409 -137991080 + AT_rich Low_complexity Low_complexity 1 35 0 2758 172 13 2 chr12 6291455 6292022 -137990467 - L1M2 LINE L1 -559 5753 5174 353 364 59 62 chr12 6292297 6292940 -137989549 - L1MEc LINE L1 -5700 696 56 376 170 0 0 chr12 6292944 6293011 -137989478 - Alu SINE Alu -250 53 1 2210 106 0 13 chr12 6293027 6293330 -137989159 + AluSq SINE Alu 1 299 -14 25 0 0 0 chr12 6293398 6293423 -137989066 + AT_rich Low_complexity Low_complexity 1 25 0 2203 89 17 0 chr12 6293425 6293727 -137988762 + AluSc SINE Alu 1 307 -2 196 298 106 21 chr12 6293871 6293965 -137988524 - L2 LINE L2 -12 3260 3159 862 208 48 34 chr12 6294182 6294389 -137988100 - MLT1J2 LTR MaLR -240 210 1 375 23 0 0 chr12 6294554 6294598 -137987891 + (TGGA)n Simple_repeat Simple_repeat 4 47 0 3872 179 34 1 chr12 6295047 6295778 -137986711 + L1MB7 LINE L1 5427 6181 -3 1117 246 46 94 chr12 6295778 6296545 -137985944 + L1MDa LINE L1 1310 2039 -4501 21 0 0 0 chr12 6296813 6296834 -137985655 + AT_rich Low_complexity Low_complexity 1 21 0 508 269 82 39 chr12 6297070 6297278 -137985211 + L2 LINE L2 2842 3058 -255 5293 101 22 14 chr12 6297299 6297750 -137984739 + L1PB2 LINE L1 5337 5800 -351 363 73 0 0 chr12 6297750 6297805 -137984684 + (TG)n Simple_repeat Simple_repeat 2 56 0 5293 101 22 14 chr12 6297805 6298154 -137984335 + L1PB2 LINE L1 5800 6144 -7 183 42 0 0 chr12 6299460 6299484 -137983005 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr12 6299722 6299746 -137982743 + GC_rich Low_complexity Low_complexity 1 24 0 208 272 9 35 chr12 6299788 6299902 -137982587 + (CCCCG)n Simple_repeat Simple_repeat 5 115 0 534 309 99 4 chr12 6300832 6301065 -137981424 - MIR SINE MIR -6 256 2 520 224 40 59 chr12 6302030 6302182 -137980307 + MIR3 SINE MIR 36 184 -24 339 300 114 0 chr12 6302694 6302834 -137979655 - MIR SINE MIR -75 187 32 2306 84 0 0 chr12 6307437 6307733 -137974756 + AluSc SINE Alu 1 296 -13 954 302 102 26 chr12 6308319 6308779 -137973710 + L2 LINE L2 2255 2749 -565 851 351 38 7 chr12 6308807 6309228 -137973261 + L1ME LINE L1 378 811 -5605 672 291 37 75 chr12 6309445 6309711 -137972778 + L1ME LINE L1 871 1052 -5364 3757 38 9 0 chr12 6309711 6310160 -137972329 - L1PA3 LINE L1 0 6155 5703 672 291 37 75 chr12 6310160 6310494 -137971995 + L1ME LINE L1 1052 1397 -5019 2948 123 136 6 chr12 6310499 6311005 -137971484 + Tigger3b DNA MER2_type 1 572 -659 865 147 14 0 chr12 6311006 6311149 -137971340 + FRAM SINE Alu 20 164 -12 3990 118 39 8 chr12 6311151 6311798 -137970691 + Tigger3b DNA MER2_type 565 1231 0 1320 260 150 32 chr12 6311798 6312898 -137969591 + L1MC/D LINE L1 1247 2673 -3934 1657 181 0 7 chr12 6312905 6313204 -137969285 + AluJb SINE Alu 11 307 -5 3705 242 67 51 chr12 6313390 6313424 -137969065 + L1MC/D LINE L1 2641 2673 -3753 1766 161 30 3 chr12 6313424 6313723 -137968766 + AluJo SINE Alu 1 307 -5 3705 242 67 51 chr12 6313723 6314540 -137967949 + L1MC/D LINE L1 2673 3475 -2951 187 53 26 26 chr12 6314540 6314578 -137967911 + (TATAA)n Simple_repeat Simple_repeat 2 39 0 3705 242 67 51 chr12 6314578 6315340 -137967149 + L1MC/D LINE L1 3475 4286 -2140 3668 116 6 4 chr12 6315342 6315852 -137966637 + MER1A DNA MER1_type 19 529 0 4048 203 79 54 chr12 6315858 6316313 -137966176 + L1MC/D LINE L1 4296 4738 -1704 1209 206 66 71 chr12 6316313 6316678 -137965811 + MLT1A1 LTR MaLR 1 363 -2 4048 203 79 54 chr12 6316678 6317026 -137965463 + L1MC/D LINE L1 4738 5076 -1366 2376 86 0 26 chr12 6317026 6317339 -137965150 - AluSc SINE Alu -4 305 1 4048 203 79 54 chr12 6317339 6318028 -137964461 + L1MC/D LINE L1 5076 5821 -621 518 158 0 11 chr12 6318154 6318249 -137964240 - AluJ/FRAM SINE Alu 0 312 219 2316 70 0 33 chr12 6318416 6318710 -137963779 + AluY SINE Alu 1 285 -22 666 37 0 0 chr12 6318710 6318791 -137963698 + (CATA)n Simple_repeat Simple_repeat 2 82 0 215 61 30 0 chr12 6320760 6320793 -137961696 + (CA)n Simple_repeat Simple_repeat 2 35 0 302 262 12 0 chr12 6321514 6321598 -137960891 + L1MC/D LINE L1 6003 6087 -2001 211 214 0 0 chr12 6321599 6321641 -137960848 + L2 LINE L2 3266 3307 -6 1889 125 4 0 chr12 6323004 6323260 -137959229 + AluSx SINE Alu 1 257 -55 210 71 0 0 chr12 6323302 6323330 -137959159 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 816 71 0 0 chr12 6330422 6330520 -137951969 + AluY SINE Alu 198 295 -16 244 343 29 19 chr12 6330788 6330893 -137951596 - L2 LINE L2 -5 3308 3203 245 317 8 42 chr12 6331456 6331576 -137950913 - L3 LINE CR1 -246 1331 1216 1428 272 67 58 chr12 6331628 6332079 -137950410 + L1MC5 LINE L1 5548 5993 -1992 1603 195 3 3 chr12 6332079 6332361 -137950128 + AluJb SINE Alu 1 282 -30 223 71 48 0 chr12 6332365 6332407 -137950082 + (TA)n Simple_repeat Simple_repeat 1 44 0 1428 272 67 58 chr12 6332407 6332758 -137949731 + L1MC5 LINE L1 5995 6341 -1644 1988 120 4 7 chr12 6332758 6333034 -137949455 - AluSx SINE Alu -16 296 22 1428 272 67 58 chr12 6333034 6333870 -137948619 + L1MC5 LINE L1 6341 7232 -753 2124 108 28 0 chr12 6333961 6334248 -137948241 + AluSc SINE Alu 1 295 -14 2484 73 0 19 chr12 6334251 6334568 -137947921 + AluY SINE Alu 1 311 0 680 135 0 8 chr12 6334585 6334711 -137947778 + (GGGA)n Simple_repeat Simple_repeat 2 126 0 529 286 38 19 chr12 6334794 6335004 -137947485 + L1MC5 LINE L1 7313 7526 -435 220 234 0 117 chr12 6335536 6335613 -137946876 + L2 LINE L2 3205 3272 0 189 107 0 0 chr12 6335613 6335641 -137946848 + (TGGA)n Simple_repeat Simple_repeat 2 29 0 747 174 0 0 chr12 6335686 6335801 -137946688 + FLAM_A SINE Alu 1 115 -18 274 304 52 37 chr12 6335850 6335985 -137946504 + L2 LINE L2 3177 3313 0 246 156 0 0 chr12 6336114 6336159 -137946330 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 746 95 17 34 chr12 6337840 6338019 -137944470 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 756 87 43 36 chr12 6338060 6338515 -137943974 + (TAGA)n Simple_repeat Simple_repeat 1 458 0 211 321 175 7 chr12 6338565 6338702 -137943787 + MIR SINE MIR 88 247 -15 264 277 0 0 chr12 6338704 6338769 -137943720 + MIR3 SINE MIR 133 197 -11 402 348 153 22 chr12 6338895 6339340 -137943149 - L3 LINE CR1 -835 742 240 192 286 66 11 chr12 6340585 6340676 -137941813 - MIR3 SINE MIR -32 176 81 316 182 27 0 chr12 6340725 6340803 -137941686 + MIR SINE MIR 104 183 -79 374 249 145 42 chr12 6341156 6341349 -137941140 - MIR SINE MIR -1 261 49 2156 136 3 3 chr12 6341386 6341694 -137940795 - AluSx SINE Alu -4 308 1 521 230 140 11 chr12 6341753 6341931 -137940558 - MIR SINE MIR -30 232 32 1531 229 46 15 chr12 6342072 6342465 -137940024 + L1ME1 LINE L1 5757 6161 -5 24 0 0 0 chr12 6343119 6343143 -137939346 + AT_rich Low_complexity Low_complexity 1 24 0 225 0 0 0 chr12 6345334 6345359 -137937130 + (A)n Simple_repeat Simple_repeat 1 25 0 245 273 66 58 chr12 6345424 6345545 -137936944 + MIR SINE MIR 11 132 -130 417 39 0 0 chr12 6345617 6345668 -137936821 + (CA)n Simple_repeat Simple_repeat 1 51 0 499 269 90 0 chr12 6345668 6345813 -137936676 - MER103 DNA DNA -1 165 8 186 171 0 0 chr12 6345988 6346029 -137936460 + (TAA)n Simple_repeat Simple_repeat 3 43 0 1110 199 75 72 chr12 6346566 6346912 -137935577 + MLT1J LTR MaLR 4 350 -161 366 235 121 20 chr12 6347398 6347547 -137934942 - MIR3 SINE MIR -15 193 30 255 218 0 0 chr12 6348064 6348119 -137934370 + L1MC4 LINE L1 6648 6702 -1340 * 277 189 14 27 chr12 6348089 6348163 -137934326 - L1MC4 LINE L1 -1340 6702 6630 229 237 51 0 chr12 6348206 6348265 -137934224 - MIR SINE MIR -109 153 92 1437 64 16 0 chr12 6349431 6349618 -137932871 - MER30B DNA MER1_type 0 190 1 312 253 0 33 chr12 6350776 6350867 -137931622 - MIR3 SINE MIR -23 185 98 198 0 0 0 chr12 6351198 6351220 -137931269 + (A)n Simple_repeat Simple_repeat 1 22 0 363 325 52 19 chr12 6351900 6352112 -137930377 + MIR SINE MIR 30 248 -14 1984 68 0 0 chr12 6352664 6352898 -137929591 + AluY SINE Alu 1 234 -77 198 0 0 0 chr12 6352913 6352935 -137929554 + (A)n Simple_repeat Simple_repeat 1 22 0 252 0 0 0 chr12 6352935 6352963 -137929526 + (TA)n Simple_repeat Simple_repeat 2 29 0 2207 105 16 7 chr12 6353146 6353451 -137929038 - AluSg SINE Alu -2 308 1 357 24 0 0 chr12 6353892 6353934 -137928555 + (CA)n Simple_repeat Simple_repeat 2 43 0 970 300 98 42 chr12 6354365 6354958 -137927531 + HAL1b LINE L1 5 662 -686 2485 45 7 16 chr12 6354958 6355266 -137927223 + AluY SINE Alu 3 307 -4 970 300 98 42 chr12 6355266 6355533 -137926956 + HAL1b LINE L1 662 913 -435 23 68 0 0 chr12 6355657 6355701 -137926788 + AT_rich Low_complexity Low_complexity 1 44 0 1035 301 119 54 chr12 6355723 6356827 -137925662 + L1MC4a LINE L1 2139 3313 -2833 283 188 16 0 chr12 6356924 6356988 -137925501 + L1P LINE L1 3343 3407 -2739 413 295 14 58 chr12 6357116 6357323 -137925166 + L1MC4a LINE L1 3507 3704 -2442 607 110 0 0 chr12 6357339 6357421 -137925068 + L1M4c LINE L1 29 110 -6274 * 1046 159 10 0 chr12 6357420 6357615 -137924874 + L1M4c LINE L1 860 1056 -5328 * 2125 106 14 35 chr12 6357603 6357970 -137924519 + L1M4c LINE L1 1924 2282 -4102 1802 157 12 26 chr12 6357972 6358232 -137924257 + L1MB3 LINE L1 5842 6097 -86 2088 56 0 8 chr12 6358232 6358483 -137924006 - AluY SINE Alu 0 311 63 1802 157 12 26 chr12 6358483 6358566 -137923923 + L1MB3 LINE L1 6097 6180 -3 725 253 125 112 chr12 6358577 6358876 -137923613 + L1MC4a LINE L1 3692 3986 -2160 240 111 0 0 chr12 6358876 6358912 -137923577 + (TG)n Simple_repeat Simple_repeat 1 36 0 725 253 125 112 chr12 6358912 6359752 -137922737 + L1MC4a LINE L1 3986 4846 -1300 8352 229 43 27 chr12 6359914 6360932 -137921557 + L1MB1 LINE L1 2596 3596 -3969 2102 103 0 14 chr12 6360932 6361213 -137921276 + AluSc SINE Alu 1 277 -32 191 35 0 35 chr12 6361213 6361242 -137921247 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 8352 229 43 27 chr12 6361242 6363334 -137919155 + L1MB1 LINE L1 3595 5784 -1781 5273 160 19 17 chr12 6363316 6363865 -137918624 + L1MB1 LINE L1 6350 6896 -691 * 360 0 0 0 chr12 6363865 6363905 -137918584 + (CA)n Simple_repeat Simple_repeat 2 41 0 5273 160 19 17 chr12 6363905 6364579 -137917910 + L1MB1 LINE L1 6896 7581 -6 1715 220 58 76 chr12 6364584 6365174 -137917315 + L1MC4a LINE L1 5310 5888 -1920 180 0 0 0 chr12 6367123 6367143 -137915346 + (TG)n Simple_repeat Simple_repeat 2 21 0 2618 57 0 0 chr12 6367144 6367440 -137915049 - AluY SINE Alu -15 296 1 1666 274 144 11 chr12 6368223 6369267 -137913222 - L2 LINE L2 -5 3308 2128 226 254 34 0 chr12 6369277 6369336 -137913153 - MIR SINE MIR -63 145 85 217 384 120 0 chr12 6369600 6369725 -137912764 - L2 LINE L2 0 3272 3133 186 43 0 0 chr12 6369730 6369753 -137912736 + (CAATA)n Simple_repeat Simple_repeat 2 24 0 407 253 96 7 chr12 6370796 6370942 -137911547 - MIR3 SINE MIR -23 185 27 438 239 32 134 chr12 6372063 6372310 -137910179 - MIR SINE MIR -14 248 27 181 305 98 0 chr12 6372640 6372722 -137909767 - MIR SINE MIR -73 135 46 247 254 16 0 chr12 6374846 6374909 -137907580 - L2 LINE L2 0 3272 3209 219 148 0 49 chr12 6376164 6376225 -137906264 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 491 200 9 9 chr12 6376784 6376894 -137905595 - MER3 DNA MER1_type 0 209 100 920 150 0 0 chr12 6377528 6377661 -137904828 - FLAM_C SINE Alu -10 133 1 2327 117 3 0 chr12 6379181 6379489 -137903000 + AluSx SINE Alu 1 309 -3 202 273 162 0 chr12 6380691 6380790 -137901699 - MIR SINE MIR -117 145 31 1410 159 19 0 chr12 6381095 6381352 -137901137 + L1MA5 LINE L1 6037 6298 -2 238 310 95 57 chr12 6381373 6381531 -137900958 + L3 LINE CR1 1190 1353 -224 417 264 72 20 chr12 6381545 6381857 -137900632 + L2 LINE L2 2758 3082 -231 1484 183 83 40 chr12 6381905 6382277 -137900212 + MLT1D LTR MaLR 118 505 0 339 25 0 0 chr12 6382283 6382323 -137900166 + (CA)n Simple_repeat Simple_repeat 2 41 0 369 200 62 0 chr12 6382339 6382419 -137900070 + L2 LINE L2 3229 3313 0 6411 70 10 6 chr12 6382823 6383717 -137898772 + L1P LINE L1 1611 2508 -3638 390 308 77 18 chr12 6384956 6385125 -137897364 + MER5A DNA MER1_type 10 188 -1 2113 128 0 10 chr12 6385185 6385481 -137897008 + AluSx SINE Alu 1 293 -19 949 61 0 0 chr12 6386680 6386795 -137895694 + AluSc SINE Alu 194 308 -1 2585 59 3 0 chr12 6386797 6387104 -137895385 + AluY SINE Alu 1 308 -3 220 271 102 0 chr12 6387104 6387163 -137895326 + MIR SINE MIR 51 115 -147 615 231 0 0 chr12 6387163 6387470 -137895019 + (CA)n Simple_repeat Simple_repeat 1 307 0 293 182 18 0 chr12 6387474 6387529 -137894960 + (CATA)n Simple_repeat Simple_repeat 1 56 0 461 275 48 16 chr12 6388674 6388863 -137893626 + MER91A DNA MER1_type 1 195 -1 1653 100 6 108 chr12 6390230 6390618 -137891871 + Tigger4(Zombi) DNA MER2_type 1 2731 0 236 221 19 19 chr12 6390660 6390743 -137891746 - MIR SINE MIR -60 148 69 762 258 181 25 chr12 6391200 6391720 -137890769 + L1ME4a LINE L1 5519 6119 -2 200 267 124 19 chr12 6394412 6394573 -137887916 + MIR3 SINE MIR 24 201 -7 237 231 0 46 chr12 6394706 6394771 -137887718 - MIR3 SINE MIR -15 193 132 315 250 71 27 chr12 6394980 6395092 -137887397 - MIR SINE MIR -122 140 24 457 188 80 212 chr12 6395392 6395587 -137886902 + MER5C DNA MER1_type 1 220 -104 2261 114 0 16 chr12 6395587 6395895 -137886594 + AluSx SINE Alu 1 303 -9 2505 55 3 0 chr12 6395895 6396186 -137886303 - AluY SINE Alu -19 292 1 457 188 80 212 chr12 6396186 6396314 -137886175 + MER5C DNA MER1_type 218 282 -42 228 300 175 8 chr12 6398173 6398293 -137884196 - MIR3 SINE MIR -8 200 61 276 292 5 108 chr12 6399397 6399592 -137882897 + L2 LINE L2 3074 3248 -65 2345 87 14 3 chr12 6400380 6400669 -137881820 + AluSx SINE Alu 1 292 -20 1458 294 101 20 chr12 6401272 6402077 -137880412 + L2 LINE L2 1765 2634 -680 314 353 129 7 chr12 6402107 6402596 -137879893 - L1ME3A LINE L1 -222 5948 5397 2282 109 0 0 chr12 6402602 6402905 -137879584 - AluSc SINE Alu -6 303 1 2388 98 0 0 chr12 6402907 6403202 -137879287 - AluSx SINE Alu -17 295 1 258 252 122 41 chr12 6404031 6404154 -137878335 + MIR SINE MIR 50 182 -80 256 366 142 19 chr12 6404254 6404929 -137877560 + L2 LINE L2 2004 2761 -553 2361 81 17 0 chr12 6405117 6405412 -137877077 + AluSq SINE Alu 1 300 -13 734 257 44 24 chr12 6405413 6405709 -137876780 + L1MC5 LINE L1 7616 7917 -44 2293 82 58 0 chr12 6405719 6406013 -137876476 - AluY SINE Alu 0 311 1 230 330 139 9 chr12 6406033 6406069 -137876420 + L2 LINE L2 3140 3170 -102 1548 199 3 11 chr12 6406069 6406351 -137876138 - AluJo SINE Alu -32 280 1 230 330 139 9 chr12 6406351 6406429 -137876060 + L2 LINE L2 3170 3269 -3 490 311 60 0 chr12 6406801 6406952 -137875537 + MIR3 SINE MIR 35 194 -14 556 148 20 0 chr12 6407319 6407420 -137875069 - L1MD1 LINE L1 0 6242 6140 254 318 19 28 chr12 6407772 6407879 -137874610 - MIR SINE MIR -152 110 5 482 224 239 40 chr12 6408032 6408233 -137874256 + MIR SINE MIR 3 243 -19 255 376 55 0 chr12 6408985 6409094 -137873395 - L2 LINE L2 -9 3263 3149 279 223 96 11 chr12 6409526 6409620 -137872869 - L3b LINE CR1 -196 1387 1286 238 276 0 120 chr12 6409777 6409934 -137872555 - MIR SINE MIR -77 131 22 369 0 0 0 chr12 6410201 6410242 -137872247 + (CA)n Simple_repeat Simple_repeat 2 42 0 858 153 0 0 chr12 6410242 6410360 -137872129 - FRAM SINE Alu -36 140 23 1349 154 45 12 chr12 6411755 6411924 -137870565 - AluJo SINE Alu -12 300 119 423 0 0 0 chr12 6411924 6411971 -137870518 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1349 154 45 12 chr12 6411971 6412047 -137870442 - AluJo SINE Alu -193 119 47 370 219 142 52 chr12 6412726 6412881 -137869608 - MIR3 SINE MIR -31 177 9 907 221 55 48 chr12 6413619 6413866 -137868623 + L2 LINE L2 3022 3273 -40 1902 149 70 6 chr12 6413866 6414209 -137868280 - MLT1A1 LTR MaLR 0 365 1 907 221 55 48 chr12 6414209 6414251 -137868238 + L2 LINE L2 3273 3313 0 2331 121 0 0 chr12 6415362 6415669 -137866820 + AluSx SINE Alu 1 307 -5 373 288 49 43 chr12 6415730 6415893 -137866596 + MIR3 SINE MIR 36 199 -9 2428 184 27 16 chr12 6416131 6416647 -137865842 + Charlie1b DNA MER1_type 1 522 -1 233 282 0 42 chr12 6416794 6416865 -137865624 + MIR SINE MIR 109 176 -86 224 33 0 0 chr12 6418974 6419004 -137863485 - MER91B DNA MER1_type -126 64 35 284 263 237 13 chr12 6419884 6420040 -137862449 - MIR3 SINE MIR -3 205 15 2447 82 0 7 chr12 6422294 6422599 -137859890 + AluSx SINE Alu 1 303 -9 1858 133 13 66 chr12 6422915 6423232 -137859257 - AluSx SINE Alu -12 300 1 1905 155 16 10 chr12 6423244 6423276 -137859213 - AluJb SINE Alu 0 312 282 372 43 0 0 chr12 6423276 6423322 -137859167 + (TG)n Simple_repeat Simple_repeat 1 46 0 1905 155 16 10 chr12 6423322 6423598 -137858891 - AluJb SINE Alu -30 282 2 501 247 126 37 chr12 6423601 6423791 -137858698 - MIR SINE MIR -38 224 18 609 256 150 6 chr12 6424896 6425076 -137857413 + MIR SINE MIR 35 240 -22 2335 108 0 0 chr12 6427314 6427610 -137854879 - AluSx SINE Alu -16 296 1 207 0 0 0 chr12 6428931 6428954 -137853535 + (A)n Simple_repeat Simple_repeat 1 23 0 273 226 94 75 chr12 6430439 6430545 -137851944 - MER5B DNA MER1_type -40 138 31 528 239 52 7 chr12 6430766 6430921 -137851568 + MER104 DNA Tc2 1 162 -18 1974 131 0 18 chr12 6431485 6431767 -137850722 + AluSx SINE Alu 15 291 -21 261 258 0 15 chr12 6431957 6432023 -137850466 + MIR SINE MIR 46 110 -152 210 37 0 0 chr12 6432484 6432511 -137849978 + (CAT)n Simple_repeat Simple_repeat 2 28 0 2465 70 0 13 chr12 6433768 6434069 -137848420 + AluY SINE Alu 1 297 -14 321 297 87 82 chr12 6434457 6434676 -137847813 + L2 LINE L2 2965 3184 -88 2150 108 0 0 chr12 6435778 6436081 -137846408 - AluSc SINE Alu 0 303 1 2090 184 26 38 chr12 6436086 6436417 -137846072 + Charlie1b DNA MER1_type 1 325 -2436 2427 79 0 0 chr12 6436417 6436708 -137845781 - AluSg SINE Alu -19 291 1 2090 184 26 38 chr12 6436708 6436904 -137845585 + Charlie1b DNA MER1_type 325 522 -1 2131 131 80 5 chr12 6436912 6437286 -137845203 + MER57A LTR ERV1 2 403 0 1247 167 41 54 chr12 6437460 6437754 -137844735 - AluSq SINE Alu -20 293 4 1764 148 32 4 chr12 6437754 6438032 -137844457 + AluSx SINE Alu 21 306 -6 199 257 7 140 chr12 6438032 6438083 -137844406 + MIR SINE MIR 100 156 -106 1388 241 82 33 chr12 6438083 6438569 -137843920 + MLT1J LTR MaLR 2 511 0 199 257 7 140 chr12 6438569 6438653 -137843836 + MIR SINE MIR 156 217 -45 1568 56 0 80 chr12 6440103 6440353 -137842136 + L1PA8 LINE L1 5939 6168 -4 184 343 20 10 chr12 6440572 6440674 -137841815 - MIR SINE MIR -72 136 34 2565 42 3 23 chr12 6441798 6442107 -137840382 - AluY SINE Alu -8 303 1 247 365 0 0 chr12 6442162 6442247 -137840242 + L3 LINE CR1 1491 1575 -2 298 264 46 0 chr12 6442553 6442640 -137839849 + MER91B DNA MER1_type 56 146 -44 2483 64 0 3 chr12 6442640 6442936 -137839553 + AluY SINE Alu 1 295 -16 251 228 35 0 chr12 6442950 6443007 -137839482 + MER91B DNA MER1_type 130 188 -2 2594 70 0 0 chr12 6444399 6444700 -137837789 - AluY SINE Alu -10 301 1 378 42 0 0 chr12 6445046 6445094 -137837395 + (TCC)n Simple_repeat Simple_repeat 2 49 0 376 297 116 0 chr12 6445125 6445280 -137837209 - MIR SINE MIR -41 221 49 1104 157 0 0 chr12 6445983 6446155 -137836334 - FRAM SINE Alu -8 168 1 319 210 96 0 chr12 6446266 6446373 -137836116 + MIR SINE MIR 13 133 -75 1190 137 21 0 chr12 6446570 6446760 -137835729 + MER72 LTR ERV1 3 196 -526 936 206 12 0 chr12 6446788 6446958 -137835531 - AluSg/x SINE Alu -14 298 127 217 277 0 15 chr12 6446964 6447029 -137835460 + (CGTG)n Simple_repeat Simple_repeat 4 67 0 495 0 0 0 chr12 6447062 6447117 -137835372 + (TG)n Simple_repeat Simple_repeat 1 55 0 2094 204 19 16 chr12 6447132 6447564 -137834925 + MER49 LTR ERV1 491 923 0 457 249 78 48 chr12 6447657 6448003 -137834486 + LTR16A LTR ERVL 13 420 -30 727 263 171 0 chr12 6448466 6448717 -137833772 + MLT1D LTR MaLR 207 500 -5 874 228 53 103 chr12 6448980 6449153 -137833336 + MSTD LTR MaLR 1 181 -215 1563 175 0 44 chr12 6449153 6449450 -137833039 - AluJb SINE Alu -9 303 20 874 228 53 103 chr12 6449450 6449693 -137832796 + MSTD LTR MaLR 181 396 0 1579 171 96 3 chr12 6450121 6450414 -137832075 - 7SLRNA srpRNA srpRNA 0 320 1 552 30 0 0 chr12 6450538 6450604 -137831885 + (TGGA)n Simple_repeat Simple_repeat 2 67 0 184 368 24 16 chr12 6450656 6450781 -137831708 + L2 LINE L2 2915 3040 -232 1133 200 161 82 chr12 6451412 6451599 -137830890 + MLT1D LTR MaLR 3 174 -331 2104 104 4 7 chr12 6451599 6451877 -137830612 + AluSc SINE Alu 1 277 -32 269 45 0 45 chr12 6451878 6451922 -137830567 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 1133 200 161 82 chr12 6451922 6452198 -137830291 + MLT1D LTR MaLR 173 505 0 323 221 35 47 chr12 6452397 6452483 -137830006 + MIR3 SINE MIR 113 197 -11 260 203 0 17 chr12 6452816 6452875 -137829614 + L1MEd LINE L1 2 59 -6060 2305 87 13 16 chr12 6452940 6453251 -137829238 + AluY SINE Alu 1 310 -1 621 233 21 83 chr12 6453354 6453481 -137829008 + L1MEd LINE L1 284 417 -5702 2194 132 3 0 chr12 6453481 6453785 -137828704 + AluSx SINE Alu 1 305 -7 621 233 21 83 chr12 6453785 6454026 -137828463 + L1MEd LINE L1 417 671 -5448 7424 26 1 0 chr12 6454026 6455348 -137827141 + L1PA3 LINE L1 4823 6154 -1 621 233 21 83 chr12 6455348 6455650 -137826839 + L1MEd LINE L1 671 1029 -5090 924 192 0 0 chr12 6455672 6455823 -137826666 + MER63A DNA MER1_type 41 191 -19 2285 104 3 3 chr12 6455938 6456246 -137826243 + AluSg SINE Alu 1 308 -2 327 71 0 0 chr12 6456336 6456378 -137826111 + Alu SINE Alu 1 42 -260 2142 123 7 0 chr12 6456603 6456896 -137825593 + AluSx SINE Alu 1 295 -17 2403 82 7 0 chr12 6456898 6457204 -137825285 + AluY SINE Alu 1 308 -3 1610 135 14 0 chr12 6457207 6457489 -137825000 + L1 LINE L1 4516 4801 -1345 2389 70 3 3 chr12 6457489 6457776 -137824713 + AluY SINE Alu 1 287 -24 240 200 0 0 chr12 6457776 6457826 -137824663 + (TA)n Simple_repeat Simple_repeat 1 50 0 229 333 0 0 chr12 6457867 6457957 -137824532 + L1MC4 LINE L1 6614 6703 -1339 189 0 0 0 chr12 6457989 6458010 -137824479 + (CA)n Simple_repeat Simple_repeat 2 22 0 4624 162 24 29 chr12 6458010 6458850 -137823639 + L1PB4 LINE L1 4780 5620 -536 2266 86 0 36 chr12 6458850 6459154 -137823335 + AluSg SINE Alu 2 294 -16 4624 162 24 29 chr12 6459154 6459680 -137822809 + L1PB4 LINE L1 5620 6147 -9 2199 107 3 27 chr12 6459680 6459979 -137822510 - AluSx SINE Alu -20 292 1 407 217 0 0 chr12 6459979 6460004 -137822485 + L1MA4A LINE L1 6279 6303 0 2794 136 8 104 chr12 6460133 6460198 -137822291 + L1MB3 LINE L1 5602 5672 -511 2289 92 0 26 chr12 6460198 6460503 -137821986 + AluSc SINE Alu 1 297 -12 2794 136 8 104 chr12 6460503 6461035 -137821454 + L1MB3 LINE L1 5672 6135 -48 2390 94 0 3 chr12 6461035 6461343 -137821146 + AluSq SINE Alu 1 307 -6 2794 136 8 104 chr12 6461343 6461386 -137821103 + L1MB3 LINE L1 6135 6181 -2 1883 210 58 20 chr12 6461399 6461884 -137820605 + L1ME1 LINE L1 5676 6334 0 356 280 123 74 chr12 6461885 6462114 -137820375 + L1M4 LINE L1 2204 2420 -3726 2383 80 0 0 chr12 6462114 6462401 -137820088 - AluY SINE Alu -24 287 1 356 280 123 74 chr12 6462401 6462455 -137820034 + L1M4 LINE L1 2420 2470 -3676 2241 136 0 0 chr12 6462455 6462765 -137819724 + AluSx SINE Alu 1 310 -2 356 280 123 74 chr12 6462765 6462778 -137819711 + L1M4 LINE L1 2470 2481 -3665 297 0 0 0 chr12 6462778 6462811 -137819678 + (CA)n Simple_repeat Simple_repeat 2 34 0 356 280 123 74 chr12 6462811 6463143 -137819346 + L1M4 LINE L1 2481 2877 -3269 2543 67 0 0 chr12 6463143 6463443 -137819046 + AluY SINE Alu 1 300 -11 356 280 123 74 chr12 6463443 6463543 -137818946 + L1M4 LINE L1 2877 2971 -3175 594 235 35 0 chr12 6463546 6463661 -137818828 + FLAM_A SINE Alu 1 119 -14 310 251 35 0 chr12 6463678 6463773 -137818716 - L1MCa LINE L1 -1349 6973 1995 279 284 0 11 chr12 6463775 6463864 -137818625 + L1M4 LINE L1 2951 3038 -3108 2408 88 0 0 chr12 6464097 6464393 -137818096 - AluY SINE Alu -15 296 1 632 260 112 0 chr12 6465130 6465299 -137817190 + MIR3 SINE MIR 4 191 -17 180 111 0 0 chr12 6465807 6465834 -137816655 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1164 231 0 9 chr12 6465834 6466059 -137816430 - AluJb SINE Alu -30 282 60 2434 82 0 25 chr12 6466112 6466430 -137816059 + AluY SINE Alu 1 310 -1 221 304 25 13 chr12 6466461 6466540 -137815949 + MER5A DNA MER1_type 38 117 -72 439 69 28 0 chr12 6467252 6467324 -137815165 + (CA)n Simple_repeat Simple_repeat 1 74 0 2531 51 10 0 chr12 6467741 6468036 -137814453 - AluY SINE Alu -12 299 2 250 222 0 37 chr12 6469045 6469099 -137813390 - MIR SINE MIR -159 103 52 1844 171 17 7 chr12 6469484 6469782 -137812707 - AluJo SINE Alu -11 301 1 545 282 141 0 chr12 6469861 6470088 -137812401 + MER112 DNA MER1_type 2 260 0 198 212 0 0 chr12 6470093 6470126 -137812363 - MIR SINE MIR -62 146 114 816 186 129 0 chr12 6470134 6470328 -137812161 - MER20 DNA MER1_type 0 219 1 225 291 46 80 chr12 6471996 6472020 -137810469 - MIR3 SINE MIR -62 146 123 1942 64 4 32 chr12 6472020 6472271 -137810218 + AluSp SINE Alu 44 287 -26 225 291 46 80 chr12 6472271 6472397 -137810092 - MIR3 SINE MIR -85 123 1 2358 98 7 0 chr12 6472820 6473127 -137809362 - AluSx SINE Alu 0 312 4 575 251 117 6 chr12 6473676 6473839 -137808650 + MER5A DNA MER1_type 9 189 0 2365 80 13 13 chr12 6474007 6474306 -137808183 + AluSx SINE Alu 1 299 -13 633 155 0 0 chr12 6474647 6474750 -137807739 + MER31B LTR ERV1 1 103 -363 2234 88 64 10 chr12 6474750 6475046 -137807443 - AluSx SINE Alu 0 312 1 187 385 13 0 chr12 6475047 6475125 -137807364 + MIR SINE MIR 63 141 -67 629 275 75 33 chr12 6476018 6476092 -137806397 - L1ME4a LINE L1 0 6121 6052 2347 113 0 0 chr12 6476092 6476402 -137806087 + AluSx SINE Alu 1 310 -2 629 275 75 33 chr12 6476402 6476752 -137805737 - L1ME4a LINE L1 -69 6052 5679 389 350 89 17 chr12 6477129 6477309 -137805180 + MIR3 SINE MIR 16 208 0 334 348 58 22 chr12 6478090 6478228 -137804261 + L2 LINE L2 3122 3264 -8 369 0 0 0 chr12 6479744 6479785 -137802704 + (CA)n Simple_repeat Simple_repeat 2 42 0 2468 50 0 0 chr12 6480157 6480465 -137802024 + AluY SINE Alu 1 308 0 554 330 68 16 chr12 6480501 6480868 -137801621 + L1ME3A LINE L1 27 412 -5707 2291 118 0 3 chr12 6480936 6481242 -137801247 - AluSg SINE Alu -5 305 1 252 232 185 40 chr12 6481268 6481419 -137801070 + L1ME3A LINE L1 665 837 -5282 889 165 0 0 chr12 6481428 6481555 -137800934 + FLAM_C SINE Alu 1 127 -16 1896 104 8 0 chr12 6481587 6481837 -137800652 + AluSc SINE Alu 51 302 -7 1709 172 20 30 chr12 6481866 6482169 -137800320 + AluJo SINE Alu 1 300 -12 232 248 109 10 chr12 6482237 6482295 -137800194 + L1ME3A LINE L1 1005 1056 -5063 2159 149 0 0 chr12 6482295 6482604 -137799885 + AluSx SINE Alu 1 309 -3 232 248 109 10 chr12 6482604 6482646 -137799843 + L1ME3A LINE L1 1056 1115 -5004 1011 250 69 12 chr12 6482695 6483015 -137799474 - LTR16C LTR ERVL 0 491 154 189 0 0 0 chr12 6483144 6483165 -137799324 + (T)n Simple_repeat Simple_repeat 1 21 0 1905 147 13 33 chr12 6483243 6483549 -137798940 - AluJb SINE Alu -12 300 1 345 293 101 35 chr12 6483970 6484287 -137798202 + L1ME3A LINE L1 2125 2462 -3667 400 259 47 86 chr12 6484437 6484487 -137798002 + L1ME3A LINE L1 4014 4064 -2065 1523 78 5 15 chr12 6484487 6484692 -137797797 + AluSc SINE Alu 1 203 -106 400 259 47 86 chr12 6484692 6484706 -137797783 + L1ME3A LINE L1 4064 4077 -2052 2505 68 3 3 chr12 6484706 6485015 -137797474 - AluY SINE Alu -2 309 1 400 259 47 86 chr12 6485015 6485181 -137797308 + L1ME3A LINE L1 4077 4236 -1893 490 249 75 30 chr12 6485293 6485317 -137797172 + L1ME3A LINE L1 4391 4412 -1717 2129 114 47 3 chr12 6485317 6485616 -137796873 + AluSx SINE Alu 1 312 0 490 249 75 30 chr12 6485616 6485856 -137796633 + L1ME3A LINE L1 4412 4667 -1462 1246 54 0 7 chr12 6485857 6486006 -137796483 + AluY SINE Alu 154 301 -10 2209 90 7 0 chr12 6486029 6486319 -137796170 + AluSp SINE Alu 1 292 -21 2401 80 13 0 chr12 6486320 6486620 -137795869 + AluY SINE Alu 1 304 -7 1019 119 44 6 chr12 6486714 6486874 -137795615 + AluSx SINE Alu 1 166 -146 8030 124 127 32 chr12 6486874 6488423 -137794066 + pTR5 LTR ERV1 743 2438 0 817 149 0 35 chr12 6488428 6488569 -137793920 + AluSp/q SINE Alu 165 300 -13 550 281 93 24 chr12 6488572 6489073 -137793416 + L1ME3A LINE L1 5369 5939 -214 1803 178 0 13 chr12 6489111 6489409 -137793080 + AluJb SINE Alu 11 304 -8 313 266 53 35 chr12 6489564 6489677 -137792812 + L1MC4 LINE L1 7926 8040 -2 374 253 138 23 chr12 6489709 6489883 -137792606 - L1ME LINE L1 -395 5726 5533 2264 60 42 7 chr12 6489948 6490232 -137792257 + AluY SINE Alu 1 294 -17 232 292 101 0 chr12 6490233 6490401 -137792088 - L1P4 LINE L1 -727 5438 5254 2299 121 0 3 chr12 6490525 6490838 -137791651 - AluSx SINE Alu 0 312 1 186 310 0 17 chr12 6491434 6491492 -137790997 - L2 LINE L2 -18 3254 3198 1217 221 79 79 chr12 6491512 6491824 -137790665 - MLT1C LTR MaLR -6 461 150 2178 132 7 0 chr12 6491824 6492128 -137790361 - AluSx SINE Alu -6 306 1 1870 133 10 58 chr12 6492130 6492439 -137790050 - AluSx SINE Alu -18 294 1 1217 221 79 79 chr12 6492439 6492579 -137789910 - MLT1C LTR MaLR -317 150 6 544 284 59 6 chr12 6492584 6492753 -137789736 - MIR SINE MIR -80 182 5 2266 90 3 20 chr12 6492858 6493158 -137789331 - AluY SINE Alu -16 295 1 342 277 92 31 chr12 6493170 6493300 -137789189 + L2 LINE L2 3167 3304 -9 563 266 25 61 chr12 6493626 6493710 -137788779 - L1ME LINE L1 -309 5812 5727 2629 59 0 0 chr12 6493710 6494015 -137788474 - AluY SINE Alu -6 305 1 563 266 25 61 chr12 6494015 6494208 -137788281 - L1ME LINE L1 -394 5727 5545 2039 159 124 28 chr12 6494640 6495098 -137787391 + MLT1D LTR MaLR 4 505 0 310 246 94 0 chr12 6495901 6496046 -137786443 + L1M4 LINE L1 2425 2620 -3526 988 192 0 6 chr12 6496048 6496215 -137786274 + AluJo SINE Alu 83 248 -64 1076 206 38 8 chr12 6496215 6496453 -137786036 - MER66A LTR ERV1 -7 471 227 3668 165 116 30 chr12 6496454 6497839 -137784650 + pTR5 LTR ERV1 741 2606 0 753 130 17 197 chr12 6497844 6497991 -137784498 - MER66A LTR ERV1 -256 222 133 2027 134 0 0 chr12 6497991 6498268 -137784221 - AluSx SINE Alu -35 277 1 753 130 17 197 chr12 6498268 6498359 -137784130 - MER66A LTR ERV1 -345 133 27 353 153 0 0 chr12 6498366 6498425 -137784064 + AluJo SINE Alu 238 296 -6 2130 112 0 30 chr12 6498431 6498736 -137783753 + AluSx SINE Alu 6 301 -11 277 234 26 0 chr12 6498751 6498828 -137783661 + L1MC/D LINE L1 5629 5707 -652 2062 66 96 0 chr12 6498829 6499101 -137783388 - AluY SINE Alu -13 298 1 1453 182 29 26 chr12 6499138 6499451 -137783038 + LOR1b LTR ERV1 70 383 -78 852 269 10 17 chr12 6499721 6500019 -137782470 + AluSx SINE Alu 17 312 0 232 292 101 0 chr12 6500142 6500310 -137782179 + L1P4 LINE L1 5254 5438 -727 1714 151 42 11 chr12 6500311 6500596 -137781893 - AluY SINE Alu -17 294 1 293 252 67 34 chr12 6500690 6500809 -137781680 + L1ME LINE L1 5577 5699 -422 1846 142 14 35 chr12 6501179 6501468 -137781021 - AluJb SINE Alu -29 283 1 420 279 114 67 chr12 6501911 6502226 -137780263 + L1 LINE L1 2164 2493 -3653 281 256 67 0 chr12 6502302 6502392 -137780097 - MLT1J LTR MaLR -60 451 356 227 235 0 44 chr12 6502795 6502863 -137779626 + L1MEd LINE L1 330 394 -5725 2231 87 11 0 chr12 6502875 6503161 -137779328 + AluY SINE Alu 1 289 -22 35 27 0 0 chr12 6503348 6503385 -137779104 + GC_rich Low_complexity Low_complexity 1 37 0 272 134 34 34 chr12 6503441 6503560 -137778929 + (TTG)n Simple_repeat Simple_repeat 2 120 0 1442 142 0 0 chr12 6503715 6503920 -137778569 + AluSq SINE Alu 107 311 -2 311 218 0 0 chr12 6503921 6503976 -137778513 - L1MC4 LINE L1 -221 7821 7767 2577 59 0 0 chr12 6503976 6504279 -137778210 + AluY SINE Alu 1 303 -8 760 138 144 28 chr12 6504280 6504461 -137778028 + L1MD1 LINE L1 5828 6029 -213 318 231 13 0 chr12 6504461 6504539 -137777950 + LOR1a LTR ERV1 1 79 -418 2555 45 3 3 chr12 6504551 6504859 -137777630 - AluY SINE Alu -3 308 1 1570 164 23 26 chr12 6504896 6505206 -137777283 + LOR1b LTR ERV1 70 378 -83 2020 125 7 0 chr12 6505206 6505493 -137776996 + AluSx SINE Alu 1 289 -23 774 294 33 82 chr12 6505695 6506147 -137776342 - L2 LINE L2 -32 3240 2811 3274 129 66 15 chr12 6506298 6506497 -137775992 + MER41C LTR ERV1 1 188 -366 2319 104 3 0 chr12 6506497 6506794 -137775695 - AluSg SINE Alu -12 298 1 3274 129 66 15 chr12 6506794 6507121 -137775368 + MER41C LTR ERV1 188 554 0 206 295 53 11 chr12 6507206 6507301 -137775188 - MIR3 SINE MIR -102 106 8 183 286 0 95 chr12 6507371 6507455 -137775034 - MIR3 SINE MIR -21 187 112 2339 102 3 0 chr12 6508116 6508421 -137774068 + AluSx SINE Alu 1 306 -6 2518 68 0 10 chr12 6508541 6508850 -137773639 - AluY SINE Alu -5 306 1 397 217 42 17 chr12 6509063 6509183 -137773306 + Charlie8 DNA MER1_type 349 471 -1946 657 242 92 35 chr12 6509205 6509569 -137772920 - MLT1F LTR MaLR -117 425 1 641 288 50 68 chr12 6509630 6510048 -137772441 + L1ME4a LINE L1 2320 2744 -3402 2308 62 0 4 chr12 6510048 6510323 -137772166 + AluY SINE Alu 1 274 -37 261 75 0 0 chr12 6510327 6510367 -137772122 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 641 288 50 68 chr12 6510367 6510561 -137771928 + L1ME4a LINE L1 2747 2926 -3220 2545 59 0 0 chr12 6510692 6510981 -137771508 - AluY SINE Alu -20 291 3 2043 139 3 0 chr12 6511187 6511489 -137771000 - AluSg SINE Alu -7 303 1 577 271 65 13 chr12 6511625 6511780 -137770709 - MLT1J LTR MaLR -348 163 1 1617 276 86 39 chr12 6511811 6512342 -137770147 + L1ME4a LINE L1 3644 4149 -1997 2265 60 57 7 chr12 6512342 6512623 -137769866 + AluY SINE Alu 1 295 -16 1617 276 86 39 chr12 6512623 6513307 -137769182 + L1ME4a LINE L1 4149 4916 -1230 300 256 211 65 chr12 6513322 6513521 -137768968 + L1ME4a LINE L1 5521 5748 -373 2248 90 4 0 chr12 6513599 6513877 -137768612 - AluSq SINE Alu -10 303 25 325 331 44 44 chr12 6513925 6514106 -137768383 + L1ME3A LINE L1 5963 6143 -27 2470 67 0 7 chr12 6514676 6514976 -137767513 + AluSc SINE Alu 1 298 -11 2205 79 10 10 chr12 6515360 6515665 -137766824 - AluSq SINE Alu -8 305 1 1563 171 7 7 chr12 6515961 6516242 -137766247 - AluJb SINE Alu -30 282 2 480 332 46 37 chr12 6516260 6516501 -137765988 + L1ME4a LINE L1 5775 6017 -104 352 266 141 8 chr12 6516504 6516632 -137765857 - MER5A DNA MER1_type -3 186 42 1718 214 37 8 chr12 6516632 6517033 -137765456 - MER63B DNA MER1_type -23 413 1 1461 189 14 21 chr12 6517102 6517393 -137765096 - L1MA5 LINE L1 0 6300 6012 494 287 97 35 chr12 6518289 6518578 -137763911 - L2 LINE L2 -7 3306 3000 5992 141 240 19 chr12 6518578 6519959 -137762530 + pTR5 LTR ERV1 753 2438 0 1102 254 56 25 chr12 6519986 6520450 -137762039 - L2 LINE L2 -350 2964 2437 873 237 102 102 chr12 6520887 6521308 -137761181 - MLT1J LTR MaLR -60 451 28 1631 174 7 13 chr12 6521308 6521607 -137760882 + AluJb SINE Alu 1 297 -15 873 237 102 102 chr12 6521607 6521636 -137760853 - MLT1J LTR MaLR -482 29 1 961 88 7 7 chr12 6521720 6521856 -137760633 - MER85 DNA T2_type -3 136 1 422 311 84 6 chr12 6521914 6522081 -137760408 - MIR SINE MIR -67 195 16 2312 84 0 0 chr12 6522414 6522713 -137759776 - AluY SINE Alu -12 299 1 221 310 17 0 chr12 6523088 6523146 -137759343 - MIR3 SINE MIR -1 207 149 536 229 95 50 chr12 6523243 6523422 -137759067 + MIR SINE MIR 13 199 -63 807 154 22 29 chr12 6523423 6523559 -137758930 + AluJo SINE Alu 2 136 -176 21 0 0 0 chr12 6523559 6523580 -137758909 + AT_rich Low_complexity Low_complexity 1 21 0 1752 117 4 0 chr12 6523580 6523836 -137758653 + AluY SINE Alu 37 293 -18 2203 92 7 3 chr12 6523838 6524144 -137758345 + AluSc SINE Alu 1 307 -2 1758 109 143 4 chr12 6524183 6524480 -137758009 - AluSq SINE Alu 0 334 1 3435 204 21 20 chr12 6524484 6525084 -137757405 + MER82 DNA MER2_type 1 604 -49 2334 81 0 7 chr12 6525084 6525394 -137757095 - AluY SINE Alu -3 308 1 3435 204 21 20 chr12 6525394 6525445 -137757044 + MER82 DNA MER2_type 604 653 0 219 269 0 0 chr12 6525446 6525498 -137756991 + MIR SINE MIR 198 249 -13 412 315 63 0 chr12 6525499 6525642 -137756847 - MIR SINE MIR -63 199 48 2387 83 0 3 chr12 6525835 6526147 -137756342 + AluY SINE Alu 1 311 0 589 256 108 5 chr12 6526689 6526884 -137755605 + MER58C DNA MER1_type 1 215 0 215 348 36 18 chr12 6526924 6527036 -137755453 + MIR SINE MIR 34 147 -61 187 270 130 78 chr12 6527210 6527325 -137755164 - MIR SINE MIR -114 148 28 2144 96 3 0 chr12 6527471 6527753 -137754736 - AluSq SINE Alu -30 283 1 2296 94 7 0 chr12 6528859 6529168 -137753321 - AluSx SINE Alu -1 311 1 847 200 141 11 chr12 6529206 6529726 -137752763 + L1MC4 LINE L1 7177 7694 -91 2142 104 7 10 chr12 6529726 6530033 -137752456 + AluSx SINE Alu 1 306 -6 847 200 141 11 chr12 6530033 6530139 -137752350 + L1MC4 LINE L1 7694 7785 0 239 196 11 120 chr12 6530213 6530245 -137752244 + MIR SINE MIR 2 36 -226 2513 40 0 3 chr12 6530245 6530545 -137751944 + AluY SINE Alu 1 299 -12 239 196 11 120 chr12 6530545 6530604 -137751885 + MIR SINE MIR 36 83 -179 373 316 9 9 chr12 6531383 6531497 -137750992 + MIR SINE MIR 24 137 -71 308 258 34 11 chr12 6531777 6531866 -137750623 - MIR SINE MIR -84 124 34 184 280 119 59 chr12 6532025 6532143 -137750346 - L2 LINE L2 0 3272 3148 2077 110 69 39 chr12 6532189 6532553 -137749936 + THE1C LTR MaLR 1 375 0 229 292 62 31 chr12 6533142 6533238 -137749251 - MLT1K LTR MaLR -461 127 29 463 220 0 23 chr12 6533529 6533661 -137748828 + L1MC4a LINE L1 4926 5054 -1092 25 51 0 0 chr12 6533738 6533777 -137748712 + AT_rich Low_complexity Low_complexity 1 39 0 1240 248 177 18 chr12 6533857 6533892 -137748597 + L1MC4a LINE L1 5258 5286 -2522 2093 128 3 0 chr12 6533892 6534189 -137748300 + AluSx SINE Alu 1 298 -14 1240 248 177 18 chr12 6534189 6534308 -137748181 + L1MC4a LINE L1 5286 5385 -2423 2078 100 0 32 chr12 6534308 6534618 -137747871 + AluY SINE Alu 1 300 -11 1240 248 177 18 chr12 6534618 6535068 -137747421 + L1MC4a LINE L1 5385 5959 -1849 2143 73 0 4 chr12 6535069 6535343 -137747146 + AluY SINE Alu 1 273 -38 375 75 0 0 chr12 6535343 6535396 -137747093 + Alu SINE Alu 243 295 -7 1673 164 13 41 chr12 6535614 6535755 -137746734 + AluJb SINE Alu 1 144 -168 2343 46 0 36 chr12 6535755 6536058 -137746431 + AluY SINE Alu 1 292 -19 1673 164 13 41 chr12 6536058 6536234 -137746255 + AluJb SINE Alu 144 309 -3 309 397 21 52 chr12 6536435 6536629 -137745860 + L1MC4a LINE L1 6414 6601 -1207 1020 76 15 0 chr12 6536828 6536959 -137745530 - AluSq/x SINE Alu -180 133 1 373 305 178 9 chr12 6537171 6537384 -137745105 - LTR33 LTR ERVL -115 406 158 421 299 55 83 chr12 6537642 6538027 -137744462 + L2 LINE L2 2899 3272 0 960 212 92 39 chr12 6538795 6539078 -137743411 - MLT1C LTR MaLR 0 467 170 1055 194 70 0 chr12 6539081 6539323 -137743166 - L1MB3 LINE L1 -65 6118 5860 829 209 5 31 chr12 6539331 6539522 -137742967 - MLT1C LTR MaLR -273 194 9 458 333 96 8 chr12 6539954 6540351 -137742138 - L2 LINE L2 -2 3311 2880 751 170 0 9 chr12 6540354 6540821 -137741668 + (TG)n Simple_repeat Simple_repeat 1 462 0 2193 104 7 0 chr12 6542100 6542409 -137740080 + AluSq SINE Alu 1 311 -2 406 265 197 0 chr12 6542487 6542634 -137739855 + L3 LINE CR1 1263 1438 -139 902 237 47 5 chr12 6543105 6543320 -137739169 - MIR SINE MIR -14 248 25 2064 184 78 23 chr12 6543393 6543865 -137738624 - MLT1D LTR MaLR -7 498 1 1395 130 113 45 chr12 6543883 6544175 -137738314 + AluSx SINE Alu 1 312 0 1054 230 41 70 chr12 6544380 6544596 -137737893 - L1MC5 LINE L1 -55 7906 7706 2542 42 0 3 chr12 6544596 6544906 -137737583 + AluY SINE Alu 1 309 -2 1054 230 41 70 chr12 6544906 6545102 -137737387 - L1MC5 LINE L1 -255 7706 7506 22 35 0 0 chr12 6545177 6545206 -137737283 + AT_rich Low_complexity Low_complexity 1 29 0 224 360 13 0 chr12 6545628 6545703 -137736786 + MIR SINE MIR 32 107 -101 1222 179 112 13 chr12 6545983 6546060 -137736429 + L1MD3 LINE L1 7653 7721 -274 2044 116 10 7 chr12 6546060 6546370 -137736119 + AluSx SINE Alu 1 311 -1 1222 179 112 13 chr12 6546370 6546604 -137735885 + L1MD3 LINE L1 7721 7995 0 433 212 71 0 chr12 6546613 6546712 -137735777 + AluSg/x SINE Alu 207 312 0 274 103 0 52 chr12 6546712 6546770 -137735719 + (GGAA)n Simple_repeat Simple_repeat 1 55 0 1889 163 0 0 chr12 6546815 6547115 -137735374 + AluJb SINE Alu 1 300 -12 208 214 89 0 chr12 6547849 6547905 -137734584 + L2 LINE L2 3203 3263 -9 303 308 57 58 chr12 6548085 6548295 -137734194 - MIR SINE MIR -50 212 3 529 249 194 15 chr12 6548767 6548968 -137733521 + MIR SINE MIR 23 259 -3 895 160 0 0 chr12 6549043 6549187 -137733302 - AluSg/x SINE Alu -20 292 149 696 106 53 9 chr12 6549187 6549300 -137733189 - LTR5 LTR ERVK 0 969 852 4793 127 184 71 chr12 6549303 6550708 -137731781 - pTR5 LTR ERV1 0 2438 739 6064 62 82 1 chr12 6550708 6551498 -137730991 - LTR5 LTR ERVK -115 854 1 1125 108 13 0 chr12 6551519 6551677 -137730812 - AluSc SINE Alu -18 291 132 2481 56 0 0 chr12 6551677 6551980 -137730509 - AluY SINE Alu -8 303 1 487 193 119 51 chr12 6552355 6552531 -137729958 - L2 LINE L2 -1 3312 3125 180 321 19 0 chr12 6553245 6553298 -137729191 + MIR SINE MIR 30 83 -125 1377 175 144 12 chr12 6553532 6553914 -137728575 - MLT1D LTR MaLR -8 497 15 1842 117 3 73 chr12 6553926 6554078 -137728411 + AluSx SINE Alu 1 121 -191 2240 88 0 0 chr12 6554078 6554363 -137728126 + AluSg SINE Alu 8 292 -18 1842 117 3 73 chr12 6554363 6554526 -137727963 + AluSx SINE Alu 121 294 -18 242 335 102 28 chr12 6554672 6554926 -137727563 - L2 LINE L2 -6 3266 2994 365 271 90 36 chr12 6555398 6555444 -137727045 - MIR3 SINE MIR -12 196 154 2414 123 121 139 chr12 6555444 6555960 -137726529 - MER4A LTR ERV1 0 664 140 2343 60 0 3 chr12 6555960 6556260 -137726229 - AluY SINE Alu -8 303 5 2414 123 121 139 chr12 6556260 6556277 -137726212 - MER4A LTR ERV1 -524 140 124 2278 84 0 0 chr12 6556277 6556576 -137725913 - AluSc SINE Alu -10 299 1 2414 123 121 139 chr12 6556576 6556717 -137725772 - MER4A LTR ERV1 -540 124 1 365 271 90 36 chr12 6556717 6556836 -137725653 - MIR3 SINE MIR -54 154 22 220 336 37 0 chr12 6556936 6557043 -137725446 - MIR SINE MIR -3 259 149 206 275 108 62 chr12 6557332 6557590 -137724899 + L2 LINE L2 2844 3113 -159 268 294 123 12 chr12 6557870 6558033 -137724456 + L2 LINE L2 2626 2806 -508 310 293 106 8 chr12 6558394 6558517 -137723972 + L1ME4a LINE L1 5982 6116 -5 208 95 12 83 chr12 6559503 6559587 -137722902 + (CGGGGG)n Simple_repeat Simple_repeat 4 81 0 1696 162 17 7 chr12 6561028 6561330 -137721159 + AluJb SINE Alu 1 305 -7 353 318 101 14 chr12 6562045 6562193 -137720296 - MIR3 SINE MIR -28 180 20 301 309 0 40 chr12 6562404 6562530 -137719959 - MIR SINE MIR -112 150 30 664 244 44 11 chr12 6563307 6563487 -137719002 + MIR3 SINE MIR 12 197 -11 543 166 131 9 chr12 6563555 6563674 -137718815 + L1PB4 LINE L1 6034 6165 -1 222 311 113 9 chr12 6563889 6563995 -137718494 + MIR SINE MIR 113 229 -33 181 28 0 83 chr12 6564869 6564905 -137717584 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1845 153 10 32 chr12 6565482 6565795 -137716694 - AluJb SINE Alu -6 306 1 1591 167 85 4 chr12 6566172 6566453 -137716036 - AluJo SINE Alu -8 304 1 2448 97 3 0 chr12 6567214 6567522 -137714967 + AluSp SINE Alu 1 309 -4 2208 97 28 0 chr12 6567830 6568118 -137714371 - AluSp SINE Alu 0 313 18 2249 99 31 0 chr12 6568239 6568531 -137713958 - AluSx SINE Alu -11 301 1 2466 100 0 0 chr12 6568947 6569256 -137713233 - AluSx SINE Alu -3 309 1 615 294 38 47 chr12 6570003 6570107 -137712382 + MIR SINE MIR 1 104 -158 2326 87 3 3 chr12 6570107 6570407 -137712082 - AluSg SINE Alu -10 300 1 615 294 38 47 chr12 6570407 6570537 -137711952 + MIR SINE MIR 104 233 -29 298 268 18 45 chr12 6571475 6571587 -137710902 + MIR3 SINE MIR 63 171 -37 366 326 21 0 chr12 6572276 6572420 -137710069 + MIR SINE MIR 95 241 -21 200 176 0 0 chr12 6572429 6572463 -137710026 + (CTG)n Simple_repeat Simple_repeat 1 34 0 327 273 61 0 chr12 6573373 6573472 -137709017 + MIR SINE MIR 51 155 -107 1791 130 14 14 chr12 6573616 6573893 -137708596 - AluJb SINE Alu -6 306 30 511 217 97 23 chr12 6574634 6574809 -137707680 - MER5A DNA MER1_type -1 188 1 375 330 5 60 chr12 6576211 6576396 -137706093 - MIR SINE MIR -41 221 47 1821 157 7 30 chr12 6576512 6576811 -137705678 + AluJb SINE Alu 1 292 -20 2112 135 0 10 chr12 6577214 6577511 -137704978 + AluJb SINE Alu 1 294 -18 2459 94 0 0 chr12 6578269 6578577 -137703912 - AluSx SINE Alu -4 308 1 2539 77 0 0 chr12 6578746 6579056 -137703433 - AluY SINE Alu -1 310 1 1765 187 29 8 chr12 6579998 6580383 -137702106 - L1MD3 LINE L1 -15 7980 7588 1895 128 0 64 chr12 6580965 6581277 -137701212 + AluJo SINE Alu 1 292 -20 2553 60 0 0 chr12 6582533 6582832 -137699657 - AluY SINE Alu -12 299 1 434 245 63 14 chr12 6584321 6584464 -137698025 - L1ME3A LINE L1 -241 5929 5780 2413 93 3 0 chr12 6586457 6586769 -137695720 - AluSp SINE Alu 0 313 1 476 306 87 15 chr12 6586776 6586972 -137695517 - MIR SINE MIR -7 255 46 231 94 0 0 chr12 6587539 6587571 -137694918 - Alu SINE Alu -227 75 44 2040 103 0 25 chr12 6587571 6587853 -137694636 + AluSx SINE Alu 31 305 -7 197 226 19 0 chr12 6588612 6588665 -137693824 + MIR SINE MIR 78 131 -77 590 211 16 16 chr12 6590547 6590675 -137691814 - MIR SINE MIR -59 203 76 531 259 8 15 chr12 6591145 6591276 -137691213 - MIR SINE MIR -58 150 21 661 120 19 0 chr12 6593619 6593727 -137688762 - HY1 scRNA scRNA -2 110 1 324 257 154 22 chr12 6593979 6594115 -137688374 - MIR SINE MIR -26 236 83 235 364 148 0 chr12 6595590 6595799 -137686690 - MIR SINE MIR -11 251 12 2379 95 16 3 chr12 6596240 6596546 -137685943 - AluSq SINE Alu -3 310 1 385 163 95 0 chr12 6596573 6596671 -137685818 + AluSg/x SINE Alu 208 299 -3 221 21 42 42 chr12 6597154 6597202 -137685287 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 2530 67 3 0 chr12 6597617 6597914 -137684575 - AluSp SINE Alu -15 298 1 256 362 17 17 chr12 6597955 6598071 -137684418 - MIR SINE MIR -62 146 31 253 147 156 156 chr12 6598113 6598222 -137684267 + L2 LINE L2 3205 3313 0 509 219 0 49 chr12 6598227 6598350 -137684139 - MLT2F LTR ERVL 0 663 547 1996 136 3 10 chr12 6598438 6598739 -137683750 - AluJb SINE Alu -13 299 1 719 176 11 13 chr12 6598762 6598945 -137683544 - MLT2F LTR ERVL -434 229 2 2145 161 67 38 chr12 6599179 6599605 -137682884 + L1MB4 LINE L1 5689 6132 -48 1738 191 20 0 chr12 6599605 6599899 -137682590 + AluJb SINE Alu 1 300 -12 2145 161 67 38 chr12 6599899 6599950 -137682539 + L1MB4 LINE L1 6132 6180 0 2248 111 3 0 chr12 6600061 6600367 -137682122 - AluSx SINE Alu -5 307 1 402 313 117 65 chr12 6601534 6601725 -137680764 + L3 LINE CR1 455 635 -942 2347 89 0 13 chr12 6601725 6602029 -137680460 + AluSx SINE Alu 1 300 -12 2213 105 7 3 chr12 6602031 6602326 -137680163 + AluSc SINE Alu 1 296 -13 402 313 117 65 chr12 6602326 6602483 -137680006 + L3 LINE CR1 635 824 -753 313 224 80 124 chr12 6602659 6602762 -137679727 - MLT1J LTR MaLR -174 337 231 2327 103 0 3 chr12 6602762 6603063 -137679426 + AluY SINE Alu 1 300 -11 313 224 80 124 chr12 6603063 6603209 -137679280 - MLT1J LTR MaLR -280 231 99 185 304 45 45 chr12 6603271 6603383 -137679106 - MIR SINE MIR -65 143 32 684 323 166 28 chr12 6603427 6604071 -137678418 + L3 LINE CR1 793 1525 -52 3675 93 0 6 chr12 6604703 6605217 -137677272 - MER9 LTR ERVK 0 511 1 2323 104 3 0 chr12 6605299 6605597 -137676892 - AluSp SINE Alu -14 299 1 2513 67 0 0 chr12 6605599 6605898 -137676591 - AluY SINE Alu -7 304 6 2292 112 0 3 chr12 6606427 6606731 -137675758 - AluSx SINE Alu -7 305 3 187 118 59 0 chr12 6607116 6607150 -137675339 + MIR SINE MIR 117 152 -110 2361 118 0 0 chr12 6607165 6607471 -137675018 + AluY SINE Alu 1 306 -5 242 162 0 0 chr12 6607787 6607824 -137674665 + Alu SINE Alu 2 38 -264 2075 129 23 13 chr12 6607824 6608133 -137674356 - AluSx SINE Alu 0 312 1 645 256 97 13 chr12 6608889 6609187 -137673302 - LTR50 LTR ERVL 0 678 296 2223 122 0 0 chr12 6610326 6610620 -137671869 - AluSx SINE Alu -18 294 1 2571 73 0 0 chr12 6611074 6611377 -137671112 - AluY SINE Alu -8 303 1 1929 120 7 37 chr12 6611548 6611847 -137670642 - AluJb SINE Alu -22 290 1 1195 149 0 0 chr12 6612048 6612229 -137670260 + AluSg/x SINE Alu 130 310 -2 346 269 57 46 chr12 6612238 6612413 -137670076 - MLT1L LTR MaLR -365 250 74 438 228 0 20 chr12 6612548 6612649 -137669840 - L2 LINE L2 -2644 670 572 1945 130 56 11 chr12 6612897 6613182 -137669307 + AluSg SINE Alu 1 298 -12 384 228 99 0 chr12 6613350 6613451 -137669038 + MIR SINE MIR 35 145 -117 2287 101 13 0 chr12 6613455 6613762 -137668727 + AluSq SINE Alu 1 311 -2 465 253 95 13 chr12 6614048 6614206 -137668283 + L2 LINE L2 576 746 -2568 230 188 203 14 chr12 6614225 6614294 -137668195 + MER112 DNA MER1_type 5 86 -174 2349 112 0 3 chr12 6614306 6614618 -137667871 + AluY SINE Alu 1 311 0 547 267 158 0 chr12 6614625 6614709 -137667780 + MER112 DNA MER1_type 64 133 -127 201 74 0 0 chr12 6614709 6614736 -137667753 + (CTATT)n Simple_repeat Simple_repeat 4 30 0 547 267 158 0 chr12 6614736 6614816 -137667673 + MER112 DNA MER1_type 133 254 -6 400 186 0 0 chr12 6614903 6614973 -137667516 + FLAM_A SINE Alu 16 85 -57 228 246 0 0 chr12 6615011 6615068 -137667421 - L2 LINE L2 -1215 2099 2043 368 241 183 16 chr12 6615070 6615261 -137667228 + L2 LINE L2 834 1056 -2258 2303 95 0 0 chr12 6615261 6615545 -137666944 + AluSq SINE Alu 1 329 0 385 22 0 0 chr12 6615545 6615590 -137666899 + (TAA)n Simple_repeat Simple_repeat 2 180 0 418 224 39 83 chr12 6615597 6615622 -137666867 - L2 LINE L2 -1 3312 3287 2315 106 0 7 chr12 6615622 6615925 -137666564 + AluSx SINE Alu 1 301 -11 418 224 39 83 chr12 6615925 6616055 -137666434 - L2 LINE L2 -26 3287 3164 2517 90 3 0 chr12 6616056 6616368 -137666121 + AluSp SINE Alu 1 313 0 14039 114 36 36 chr12 6616405 6618768 -137663721 - Tigger1 DNA MER2_type 0 2418 52 2460 67 0 17 chr12 6618768 6619068 -137663421 + AluY SINE Alu 2 296 -15 14039 114 36 36 chr12 6619068 6619118 -137663371 - Tigger1 DNA MER2_type -2366 52 4 339 242 20 0 chr12 6619122 6619221 -137663268 - L2 LINE L2 -363 2951 2851 2058 148 7 0 chr12 6619222 6619526 -137662963 + AluJb SINE Alu 1 306 -6 207 0 0 0 chr12 6619527 6619550 -137662939 + (CA)n Simple_repeat Simple_repeat 2 24 0 327 238 0 0 chr12 6619555 6619618 -137662871 + L1MC4 LINE L1 6640 6702 -1340 1712 253 165 39 chr12 6619620 6619933 -137662556 - L2 LINE L2 -453 2861 2589 2506 54 3 3 chr12 6619933 6620230 -137662259 - AluY SINE Alu -14 297 1 1712 253 165 39 chr12 6620230 6620754 -137661735 - L2 LINE L2 -725 2589 1919 2379 95 0 0 chr12 6620755 6621050 -137661439 - AluSq SINE Alu -6 307 13 1270 84 0 0 chr12 6621063 6621217 -137661272 - AluSq SINE Alu -8 305 152 200 239 155 0 chr12 6622541 6622612 -137659877 + MIR SINE MIR 107 188 -74 1315 175 69 95 chr12 6622625 6622730 -137659759 + MLT2D LTR ERVL 3 109 -305 2241 97 26 26 chr12 6622730 6623041 -137659448 + AluSx SINE Alu 1 311 -1 1315 175 69 95 chr12 6623041 6623358 -137659131 + MLT2D LTR ERVL 109 414 0 195 344 33 0 chr12 6623746 6623836 -137658653 - MIR3 SINE MIR -29 179 87 184 388 30 8 chr12 6623875 6624009 -137658480 - MIR SINE MIR -55 153 17 240 233 0 0 chr12 6624358 6624401 -137658088 - L2 LINE L2 -259 3054 3012 338 213 33 57 chr12 6624466 6624588 -137657901 + MIR SINE MIR 25 143 -119 862 142 0 0 chr12 6624599 6624726 -137657763 + FLAM_C SINE Alu 15 141 -2 396 194 83 9 chr12 6624732 6624840 -137657649 + MIR SINE MIR 137 252 -10 2426 90 0 7 chr12 6624862 6625163 -137657326 + AluSg1 SINE Alu 1 299 -10 276 30 0 0 chr12 6625163 6625196 -137657293 + (TA)n Simple_repeat Simple_repeat 2 34 0 2156 141 3 0 chr12 6625202 6625500 -137656989 + AluSq SINE Alu 1 299 -14 1975 149 0 7 chr12 6625517 6625819 -137656670 + AluSx SINE Alu 1 300 -12 276 170 0 0 chr12 6626278 6626331 -137656158 + (CA)n Simple_repeat Simple_repeat 1 53 0 306 327 6 12 chr12 6626475 6626640 -137655849 + L1MC4a LINE L1 5872 6035 -1773 2307 111 0 7 chr12 6627010 6627316 -137655173 + AluSq SINE Alu 1 304 -9 823 164 57 0 chr12 6627323 6627463 -137655026 + FRAM SINE Alu 11 158 -18 54 29 0 0 chr12 6627504 6627572 -137654917 + AT_rich Low_complexity Low_complexity 1 68 0 216 0 0 0 chr12 6628352 6628376 -137654113 + (A)n Simple_repeat Simple_repeat 1 24 0 546 290 68 27 chr12 6628396 6628617 -137653872 + MIR SINE MIR 21 250 -12 2502 71 0 10 chr12 6628646 6628954 -137653535 - AluY SINE Alu -6 305 1 359 283 106 33 chr12 6629019 6629199 -137653290 - MLT1K LTR MaLR 0 588 396 204 186 0 0 chr12 6629238 6629297 -137653192 + T-rich Low_complexity Low_complexity 1 59 0 240 111 0 0 chr12 6629712 6629748 -137652741 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 304 39 0 0 chr12 6629749 6629800 -137652689 + AluSp/q SINE Alu 253 303 0 652 277 64 84 chr12 6629816 6630120 -137652369 - MLT1E LTR MaLR -149 444 135 2372 61 4 0 chr12 6630120 6630430 -137652059 - AluY SINE Alu 0 311 1 1818 175 3 3 chr12 6630432 6630717 -137651772 - AluJb SINE Alu -17 295 11 652 277 64 84 chr12 6630717 6630848 -137651641 - MLT1E LTR MaLR -459 134 14 803 219 112 85 chr12 6630848 6630938 -137651551 - L2 LINE L2 -520 2794 2708 2375 98 0 0 chr12 6630938 6631233 -137651256 - AluSc SINE Alu -14 295 1 803 219 112 85 chr12 6631233 6631259 -137651230 - L2 LINE L2 -606 2708 2684 2034 103 0 35 chr12 6631259 6631574 -137650915 + AluY SINE Alu 1 305 0 803 219 112 85 chr12 6631574 6631821 -137650668 - L2 LINE L2 -630 2684 2419 251 307 168 0 chr12 6631968 6632069 -137650420 - L2 LINE L2 -5 3267 3150 1354 154 82 82 chr12 6632336 6632511 -137649978 - AluJo SINE Alu -20 292 115 315 0 0 0 chr12 6632511 6632546 -137649943 + (TG)n Simple_repeat Simple_repeat 2 36 0 1354 154 82 82 chr12 6632546 6632662 -137649827 - AluJo SINE Alu -196 116 1 1054 237 101 29 chr12 6632689 6633174 -137649315 - LTR33 LTR ERVL -1 520 1 326 276 168 0 chr12 6634610 6634752 -137647737 - MIR SINE MIR -55 207 33 2017 112 0 58 chr12 6634813 6635126 -137647363 + AluSx SINE Alu 1 295 -17 419 261 62 15 chr12 6635680 6635810 -137646679 + MER5B DNA MER1_type 43 178 0 2328 95 0 3 chr12 6635964 6636260 -137646229 + AluSg SINE Alu 1 295 -15 696 267 23 28 chr12 6636542 6636759 -137645730 + MIR SINE MIR 22 237 -25 244 229 0 0 chr12 6636773 6636834 -137645655 + (TA)n Simple_repeat Simple_repeat 1 61 0 521 178 19 9 chr12 6636920 6637027 -137645462 - FLAM_A SINE Alu -15 127 20 1517 166 104 6 chr12 6637039 6637377 -137645112 - Tigger2a DNA MER2_type -63 371 1 284 246 0 0 chr12 6637390 6637447 -137645042 - MIR SINE MIR -9 253 197 22 35 0 0 chr12 6638021 6638050 -137644439 + GC_rich Low_complexity Low_complexity 1 29 0 1648 165 3 14 chr12 6638307 6638604 -137643885 - AluJb SINE Alu -15 297 4 223 323 152 0 chr12 6639329 6639428 -137643061 - MIR SINE MIR -69 193 80 259 205 128 0 chr12 6639635 6639713 -137642776 + L2 LINE L2 3225 3312 -1 185 176 0 0 chr12 6639886 6639920 -137642569 - L3b LINE CR1 -196 1387 1354 * 447 304 213 41 chr12 6639897 6640983 -137641506 + L2 LINE L2 397 1295 -2019 2131 125 13 0 chr12 6640983 6641286 -137641203 + AluSx SINE Alu 1 307 -5 447 304 213 41 chr12 6641286 6641842 -137640647 + L2 LINE L2 1295 2321 -993 22 56 0 0 chr12 6642015 6642051 -137640438 + AT_rich Low_complexity Low_complexity 1 36 0 2339 143 70 64 chr12 6642051 6642142 -137640347 + L1MB2 LINE L1 5652 5741 -430 1881 125 0 45 chr12 6642142 6642429 -137640060 + AluJo SINE Alu 5 278 -34 233 0 62 0 chr12 6642434 6642466 -137640023 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2339 143 70 64 chr12 6642466 6642834 -137639655 + L1MB2 LINE L1 5744 6123 -48 2395 90 10 0 chr12 6642834 6643135 -137639354 + AluSp SINE Alu 1 304 -9 2339 143 70 64 chr12 6643135 6643185 -137639304 + L1MB2 LINE L1 6123 6171 0 660 132 61 0 chr12 6643223 6643337 -137639152 - AluSx SINE Alu -11 301 181 843 85 9 0 chr12 6643337 6643443 -137639046 - AluSx SINE Alu -205 107 1 228 333 31 0 chr12 6643444 6643540 -137638949 + L2 LINE L2 2725 2823 -491 224 341 41 0 chr12 6643762 6643885 -137638604 + L2 LINE L2 3142 3269 -3 434 311 106 6 chr12 6643918 6644079 -137638410 + MIR SINE MIR 36 212 -50 2030 152 10 0 chr12 6644892 6645194 -137637295 - AluJo SINE Alu -7 305 1 2328 58 44 31 chr12 6645914 6646208 -137636281 - AluSg SINE Alu -11 299 2 2438 65 0 29 chr12 6646484 6646793 -137635696 + AluY SINE Alu 1 300 -11 1513 198 88 0 chr12 6646807 6647080 -137635409 + AluJb SINE Alu 1 297 -15 1302 166 60 19 chr12 6647080 6647345 -137635144 - L1MB7 LINE L1 -171 6013 5738 990 137 0 0 chr12 6647356 6647495 -137634994 - AluJb SINE Alu -15 297 159 2614 171 37 27 chr12 6647496 6647790 -137634699 - L1M4 LINE L1 -394 5784 5495 2206 79 0 41 chr12 6647790 6648107 -137634382 - AluY SINE Alu -4 307 4 2614 171 37 27 chr12 6648107 6648325 -137634164 - L1M4 LINE L1 -683 5495 5281 2272 95 24 0 chr12 6648325 6648447 -137634042 + AluSx SINE Alu 1 119 -193 192 77 0 0 chr12 6648447 6648473 -137634016 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2272 95 24 0 chr12 6648473 6648644 -137633845 + AluSx SINE Alu 119 301 -11 2614 171 37 27 chr12 6648644 6648866 -137633623 - L1M4 LINE L1 -897 5281 5050 1175 147 73 10 chr12 6648873 6649077 -137633412 - AluJb SINE Alu -9 303 87 1007 203 66 4 chr12 6649080 6649321 -137633168 - L1M4 LINE L1 -1092 5054 4799 2122 191 32 92 chr12 6650916 6651300 -137631189 - L1M4 LINE L1 -1332 4814 4486 2536 80 0 0 chr12 6651300 6651611 -137630878 + AluY SINE Alu 1 311 0 2122 191 32 92 chr12 6651611 6651902 -137630587 - L1M4 LINE L1 -1660 4486 4179 242 141 51 77 chr12 6652165 6652243 -137630246 + L1MB4 LINE L1 6105 6180 0 872 191 0 13 chr12 6652554 6652706 -137629783 - AluJb SINE Alu -22 290 141 2048 152 0 0 chr12 6652717 6653006 -137629483 - AluSx SINE Alu -14 298 10 2329 97 13 7 chr12 6653134 6653433 -137629056 + AluSx SINE Alu 1 301 -11 705 106 0 0 chr12 6653454 6653558 -137628931 + (GGAA)n Simple_repeat Simple_repeat 4 107 0 215 122 0 24 chr12 6653601 6653642 -137628847 + (GAAA)n Simple_repeat Simple_repeat 3 42 0 758 148 7 22 chr12 6653652 6653787 -137628702 + FLAM_C SINE Alu 1 133 0 260 287 107 24 chr12 6653799 6653982 -137628507 + MIR SINE MIR 19 212 -50 214 317 43 30 chr12 6654806 6654970 -137627519 + L2 LINE L2 2864 3029 -243 264 259 155 23 chr12 6654997 6655026 -137627463 - MLT1J LTR MaLR -24 487 463 2163 108 0 0 chr12 6655026 6655303 -137627186 + AluSx SINE Alu 1 277 -35 264 259 155 23 chr12 6655303 6655447 -137627042 - MLT1J LTR MaLR -48 463 291 1110 203 50 86 chr12 6655601 6655843 -137626646 + MER97a DNA MER1_type? 12 261 -633 2346 95 0 0 chr12 6655843 6656150 -137626339 + AluSx SINE Alu 1 307 0 1110 203 50 86 chr12 6656150 6656204 -137626285 + MER97a DNA MER1_type? 261 315 -579 2630 46 13 0 chr12 6656204 6656510 -137625979 + AluY SINE Alu 1 310 -1 1110 203 50 86 chr12 6656510 6656595 -137625894 + MER97a DNA MER1_type? 315 381 -513 2659 180 8 95 chr12 6656635 6656706 -137625783 + MER41D LTR ERV1 1 77 -480 757 153 15 0 chr12 6656706 6656837 -137625652 - FLAM_C SINE Alu 0 133 1 2659 180 8 95 chr12 6656837 6657375 -137625114 + MER41D LTR ERV1 77 557 0 536 182 65 140 chr12 6657384 6657524 -137624965 + MER97c DNA MER1_type? 468 588 -502 1702 118 0 0 chr12 6657524 6657752 -137624737 + AluSx SINE Alu 1 228 -84 536 182 65 140 chr12 6657752 6657825 -137624664 + MER97c DNA MER1_type? 588 665 -425 337 123 62 31 chr12 6657840 6657903 -137624586 + MER97a DNA MER1_type? 801 865 -29 391 162 15 0 chr12 6657903 6657971 -137624518 + AluS SINE Alu 1 69 -234 2030 70 46 0 chr12 6658151 6658436 -137624053 + L1PB1 LINE L1 5851 6148 -3 500 267 222 22 chr12 6658454 6658814 -137623675 + Charlie2b DNA MER1_type 312 743 -2039 1083 229 84 74 chr12 6658868 6658904 -137623585 + Charlie2b DNA MER1_type 833 867 -1915 2234 98 3 7 chr12 6658904 6659200 -137623289 + AluSg SINE Alu 1 295 -15 1083 229 84 74 chr12 6659200 6659365 -137623124 + Charlie2b DNA MER1_type 867 1029 -1753 2002 122 17 7 chr12 6659365 6659661 -137622828 - AluJb SINE Alu -8 304 6 1083 229 84 74 chr12 6659661 6659864 -137622625 + Charlie2b DNA MER1_type 1029 1242 -1540 698 241 89 21 chr12 6659953 6660144 -137622345 - MIR SINE MIR -25 237 34 1475 153 0 5 chr12 6660290 6660505 -137621984 + AluJb SINE Alu 85 298 -14 189 0 0 0 chr12 6660506 6660527 -137621962 + (TA)n Simple_repeat Simple_repeat 2 22 0 292 258 97 8 chr12 6660564 6660688 -137621801 + L1MC4 LINE L1 7908 8042 0 2131 115 3 3 chr12 6660856 6661144 -137621345 - AluSx SINE Alu -15 297 10 749 255 36 15 chr12 6661355 6661551 -137620938 - LTR16A LTR ERVL -174 276 77 313 161 0 161 chr12 6661561 6661603 -137620886 - MIR SINE MIR -115 147 126 2134 151 0 0 chr12 6661603 6661915 -137620574 + AluSx SINE Alu 1 312 0 313 161 0 161 chr12 6661915 6661965 -137620524 - MIR SINE MIR -136 126 70 966 258 141 21 chr12 6661990 6662374 -137620115 - MLT1H LTR MaLR -13 536 107 2341 102 0 13 chr12 6662889 6663204 -137619285 - AluY SINE Alu 0 311 1 718 287 61 4 chr12 6663815 6664045 -137618444 + MIR SINE MIR 5 247 -15 1794 156 7 7 chr12 6664054 6664342 -137618147 + AluJo SINE Alu 1 288 -24 198 0 0 0 chr12 6664342 6664364 -137618125 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2430 87 0 10 chr12 6664678 6664989 -137617500 + AluSc SINE Alu 1 308 -1 280 292 21 0 chr12 6665021 6665117 -137617372 + L2 LINE L2 2962 3059 -213 1051 157 0 0 chr12 6665236 6665395 -137617094 + AluJb SINE Alu 140 298 -14 346 267 103 0 chr12 6665636 6665752 -137616737 - MER117 DNA MER1_type -39 158 31 182 335 112 20 chr12 6666184 6666336 -137616153 - L2 LINE L2 -190 3082 2917 575 281 58 54 chr12 6666534 6666847 -137615642 + L2 LINE L2 2914 3227 -45 504 0 0 0 chr12 6668049 6668105 -137614384 + (CA)n Simple_repeat Simple_repeat 1 56 0 468 192 0 0 chr12 6668774 6668852 -137613637 + FLAM SINE Alu 41 118 -25 30 27 0 0 chr12 6668857 6668894 -137613595 + AT_rich Low_complexity Low_complexity 1 37 0 2347 93 0 0 chr12 6668952 6669262 -137613227 - AluSg SINE Alu 0 310 1 22 35 0 0 chr12 6669657 6669686 -137612803 + GC_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr12 6670139 6670175 -137612314 + GC_rich Low_complexity Low_complexity 1 36 0 463 264 55 60 chr12 6670778 6670979 -137611510 - MER58 DNA MER1_type -107 234 35 2309 88 0 13 chr12 6673492 6673799 -137608690 + AluSq SINE Alu 1 303 -10 189 178 0 0 chr12 6674161 6674206 -137608283 + (CA)n Simple_repeat Simple_repeat 2 46 0 663 226 43 33 chr12 6674525 6674736 -137607753 + MIR SINE MIR 3 217 -45 2145 113 14 0 chr12 6678445 6678738 -137603751 + AluSx SINE Alu 9 305 -7 512 357 57 37 chr12 6678982 6679538 -137602951 - L2 LINE L2 -2 3270 2712 1319 218 40 58 chr12 6679588 6680034 -137602455 - MLT1C LTR MaLR -29 438 1 1860 168 0 7 chr12 6680290 6680587 -137601902 - AluJo SINE Alu -11 301 7 2350 34 41 3 chr12 6680828 6681119 -137601370 + AluY SINE Alu 1 302 -9 491 284 0 15 chr12 6681167 6681307 -137601182 + MIR SINE MIR 36 171 -67 1825 163 0 7 chr12 6681868 6682175 -137600314 + AluJo SINE Alu 1 305 -7 209 317 0 0 chr12 6683503 6683585 -137598904 + C-rich Low_complexity Low_complexity 1 82 0 213 39 0 0 chr12 6684438 6684464 -137598025 + (CCCCCT)n Simple_repeat Simple_repeat 3 28 0 491 247 29 12 chr12 6684531 6684717 -137597772 + MIR SINE MIR 30 216 -46 552 241 36 100 chr12 6685149 6685296 -137597193 + MIR SINE MIR 55 185 -77 2160 117 0 0 chr12 6685296 6685604 -137596885 + AluSg SINE Alu 1 308 -2 552 241 36 100 chr12 6685604 6685676 -137596813 + MIR SINE MIR 185 260 -2 218 404 94 9 chr12 6686266 6686479 -137596010 - L2 LINE L2 -7 3265 3035 1325 132 147 16 chr12 6687644 6687902 -137594587 + AluJo SINE Alu 1 292 -10 226 0 29 29 chr12 6688207 6688242 -137594247 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr12 6688598 6688627 -137593862 + GC_rich Low_complexity Low_complexity 1 29 0 254 333 0 10 chr12 6689214 6689310 -137593179 + (CTGGGG)n Simple_repeat Simple_repeat 1 95 0 182 114 0 29 chr12 6690034 6690069 -137592420 + (TGGA)n Simple_repeat Simple_repeat 2 35 0 317 287 118 47 chr12 6690402 6690594 -137591895 + MIR SINE MIR 11 216 -46 195 327 39 29 chr12 6690614 6690718 -137591771 - MIR SINE MIR -103 159 55 2294 92 16 0 chr12 6690997 6691301 -137591188 + AluSg SINE Alu 1 309 -1 421 282 72 67 chr12 6691322 6691430 -137591059 - MIR SINE MIR -32 230 119 1985 129 23 13 chr12 6691430 6691739 -137590750 + AluJo SINE Alu 1 312 0 421 282 72 67 chr12 6691739 6691839 -137590650 - MIR SINE MIR -143 119 21 481 299 85 6 chr12 6691912 6692076 -137590413 - MER104 DNA MER2_type 0 180 4 189 299 22 103 chr12 6693691 6693782 -137588707 + L2 LINE L2 3138 3208 -105 1644 167 25 7 chr12 6693782 6694058 -137588431 - AluJb SINE Alu -18 294 14 189 299 22 103 chr12 6694058 6694150 -137588339 + L2 LINE L2 3208 3306 -7 323 268 45 0 chr12 6694215 6694327 -137588162 + L1ME3A LINE L1 6049 6165 -5 214 333 103 0 chr12 6695242 6695329 -137587160 + L3b LINE CR1 1300 1395 -188 1685 116 0 144 chr12 6697851 6698197 -137584292 - AluJo SINE Alu -12 300 5 342 348 78 15 chr12 6698601 6698871 -137583618 - L2 LINE L2 -1 3271 2985 188 231 0 108 chr12 6698997 6699062 -137583427 + L2 LINE L2 3190 3247 -66 234 0 0 0 chr12 6699088 6699114 -137583375 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 315 0 0 0 chr12 6699113 6699148 -137583341 + (CA)n Simple_repeat Simple_repeat 1 35 0 361 230 130 20 chr12 6699422 6699522 -137582967 + L2 LINE L2 3143 3253 -19 492 328 18 23 chr12 6699526 6699697 -137582792 - MIR SINE MIR -49 213 44 329 306 65 102 chr12 6701571 6701816 -137580673 + MIR SINE MIR 10 245 -17 282 244 89 89 chr12 6702020 6702155 -137580334 + MIR SINE MIR 58 192 -70 1941 147 17 0 chr12 6702313 6702612 -137579877 - AluJb SINE Alu -4 308 5 256 246 179 45 chr12 6702614 6702748 -137579741 - MIR3 SINE MIR -55 153 2 384 326 59 0 chr12 6703313 6703448 -137579041 + MIR SINE MIR 118 260 -2 849 209 37 0 chr12 6703449 6703612 -137578877 - AluJo SINE Alu -20 292 124 2246 83 3 0 chr12 6703692 6703982 -137578507 + AluSg SINE Alu 1 291 -19 2172 100 10 0 chr12 6703999 6704290 -137578199 - AluSq SINE Alu -19 294 1 180 0 0 0 chr12 6704707 6704727 -137577762 + (CA)n Simple_repeat Simple_repeat 1 20 0 216 275 0 38 chr12 6704728 6704808 -137577681 + MIR3 SINE MIR 12 88 -120 511 316 26 94 chr12 6706113 6706496 -137575993 - L2 LINE L2 0 3272 2916 214 285 15 66 chr12 6707202 6707339 -137575150 + G-rich Low_complexity Low_complexity 4 133 0 713 184 0 63 chr12 6708861 6709007 -137573482 + FRAM SINE Alu 1 30 -146 2308 72 0 0 chr12 6709007 6709297 -137573192 - AluY SINE Alu -21 290 1 713 184 0 63 chr12 6709297 6709308 -137573181 + FRAM SINE Alu 30 40 0 3092 161 20 81 chr12 6709308 6709422 -137573067 + L1MB8 LINE L1 5288 5407 -771 2655 26 0 7 chr12 6709422 6709731 -137572758 + AluY SINE Alu 1 307 -4 3092 161 20 81 chr12 6709731 6709826 -137572663 + L1MB8 LINE L1 5407 5506 -672 2075 124 3 10 chr12 6709826 6710170 -137572319 + AluSx SINE Alu 1 312 0 3092 161 20 81 chr12 6710170 6710613 -137571876 + L1MB8 LINE L1 5506 5975 -203 2129 107 7 16 chr12 6710613 6710921 -137571568 + AluSx SINE Alu 1 305 -7 3092 161 20 81 chr12 6710921 6711030 -137571459 + L1MB8 LINE L1 5975 5980 -198 1827 158 31 0 chr12 6711030 6711322 -137571167 - AluJb SINE Alu -11 301 1 3092 161 20 81 chr12 6711322 6711510 -137570979 + L1MB8 LINE L1 5980 6178 0 386 342 33 0 chr12 6711879 6711999 -137570490 + MIR3 SINE MIR 82 205 -3 371 247 62 37 chr12 6712469 6712631 -137569858 - Charlie7 DNA MER1_type -7 2605 2440 2416 62 7 0 chr12 6712851 6713160 -137569329 - AluY SINE Alu 0 311 1 2043 82 0 4 chr12 6713260 6713529 -137568960 + AluY SINE Alu 41 308 -3 556 269 69 0 chr12 6715280 6715440 -137567049 - MIR SINE MIR -14 248 78 226 316 30 98 chr12 6715575 6715708 -137566781 + L2 LINE L2 3143 3266 -6 315 0 0 0 chr12 6715709 6715744 -137566745 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 194 243 50 19 chr12 6716170 6716273 -137566216 + MIR3 SINE MIR 77 164 -44 1954 114 70 0 chr12 6716567 6716838 -137565651 + AluSq SINE Alu 5 294 -19 776 202 88 80 chr12 6716955 6716987 -137565502 + MIR SINE MIR 2 32 -230 2278 104 3 3 chr12 6716987 6717285 -137565204 + AluSq SINE Alu 1 298 -15 776 202 88 80 chr12 6717285 6717490 -137564999 + MIR SINE MIR 32 241 -21 3689 149 25 26 chr12 6717518 6717848 -137564641 + L1MB7 LINE L1 5454 5783 -401 2172 129 0 3 chr12 6717848 6718151 -137564338 + AluJo SINE Alu 1 302 -10 3689 149 25 26 chr12 6718151 6718552 -137563937 + L1MB7 LINE L1 5783 6184 0 2040 134 94 42 chr12 6718673 6719036 -137563453 + MSTB LTR MaLR 2 390 -36 2442 99 0 0 chr12 6719036 6719340 -137563149 - AluSx SINE Alu -6 306 3 2040 134 94 42 chr12 6719340 6719380 -137563109 + MSTB LTR MaLR 390 426 0 390 286 21 36 chr12 6720329 6720469 -137562020 + L2 LINE L2 3176 3313 0 342 360 36 7 chr12 6720493 6720632 -137561857 - MIR3 SINE MIR -65 143 1 2272 88 10 19 chr12 6720729 6721036 -137561453 + AluSp SINE Alu 1 304 -9 213 225 338 0 chr12 6721803 6721883 -137560606 - MIR SINE MIR -59 149 43 1908 146 10 20 chr12 6721952 6722254 -137560235 - AluJb SINE Alu -13 299 1 213 39 0 0 chr12 6722407 6722433 -137560056 + (TAA)n Simple_repeat Simple_repeat 2 27 0 26 74 0 0 chr12 6722656 6722710 -137559779 + GC_rich Low_complexity Low_complexity 1 54 0 186 274 39 0 chr12 6723500 6723551 -137558938 - MER5B DNA MER1_type -68 110 58 2517 53 0 23 chr12 6723745 6724048 -137558441 + AluY SINE Alu 1 296 -15 1852 246 58 25 chr12 6724071 6724298 -137558191 + L1ME3 LINE L1 4316 4534 -1612 1909 129 24 14 chr12 6724298 6724592 -137557897 - AluJb SINE Alu -15 297 1 1852 246 58 25 chr12 6724592 6725073 -137557416 + L1ME3 LINE L1 4534 5096 -1050 2313 60 28 0 chr12 6725141 6725425 -137557064 - AluY SINE Alu -19 292 1 1164 148 59 51 chr12 6725454 6725710 -137556779 + L1ME3 LINE L1 5524 5781 -403 355 222 0 44 chr12 6725753 6725790 -137556699 + L1M3 LINE L1 5648 5685 -486 2470 80 3 0 chr12 6725790 6726092 -137556397 + AluSp SINE Alu 1 303 -10 355 222 0 44 chr12 6726092 6726170 -137556319 + L1M3 LINE L1 5685 5758 -413 2037 158 3 0 chr12 6726229 6726526 -137555963 + AluJb SINE Alu 2 299 -13 271 170 0 0 chr12 6726530 6726577 -137555912 - MIR SINE MIR 0 262 216 549 141 10 10 chr12 6726602 6726701 -137555788 - MER57A LTR ERV1 0 403 305 735 210 204 41 chr12 6726703 6727017 -137555472 + L1ME3 LINE L1 5798 6162 0 373 246 45 18 chr12 6727017 6727127 -137555362 - MER5B DNA MER1_type -49 129 17 410 214 74 107 chr12 6727334 6727402 -137555087 - MIR SINE MIR -4 258 189 2012 181 2 19 chr12 6727402 6727812 -137554677 - MER57A LTR ERV1 0 403 1 410 214 74 107 chr12 6727812 6727958 -137554531 - MIR SINE MIR -73 189 51 476 237 17 58 chr12 6728061 6728217 -137554272 + MIR SINE MIR 46 199 -48 245 266 49 0 chr12 6728509 6728652 -137553837 + (CCTG)n Simple_repeat Simple_repeat 1 150 0 2525 66 0 7 chr12 6728822 6729127 -137553362 + AluY SINE Alu 1 303 -8 582 275 41 0 chr12 6729410 6729581 -137552908 - MIR SINE MIR -75 187 10 308 93 0 19 chr12 6730804 6730858 -137551631 + (TGGGGG)n Simple_repeat Simple_repeat 2 54 0 589 266 7 0 chr12 6730864 6731007 -137551482 + MIR SINE MIR 53 196 -66 1721 108 21 4 chr12 6731068 6731309 -137551180 - AluSx SINE Alu -7 305 61 399 127 0 6 chr12 6731358 6731430 -137551059 - AluSx SINE Alu -245 57 2 379 280 47 27 chr12 6731445 6731595 -137550894 + MIR SINE MIR 82 234 -28 447 216 120 0 chr12 6732177 6732302 -137550187 + MIR SINE MIR 56 195 -67 186 224 0 0 chr12 6733348 6733397 -137549092 + G-rich Low_complexity Low_complexity 5 53 0 279 295 16 23 chr12 6734465 6734594 -137547895 + CT-rich Low_complexity Low_complexity 4 131 0 253 310 110 14 chr12 6736285 6736430 -137546059 - L2 LINE L2 -173 3099 2941 246 359 35 14 chr12 6736572 6736714 -137545775 - MIR3 SINE MIR -62 146 2 928 225 0 11 chr12 6737547 6737738 -137544751 - AluJo SINE Alu -1 311 123 288 246 0 14 chr12 6737741 6737810 -137544679 + MIR SINE MIR 82 149 -59 408 261 37 22 chr12 6737869 6738003 -137544486 - MIR3 SINE MIR -54 154 19 22 0 0 0 chr12 6738360 6738382 -137544107 + AT_rich Low_complexity Low_complexity 1 22 0 256 0 0 0 chr12 6738418 6738448 -137544041 - MER11C LTR ERVK -1041 30 1 2407 86 0 13 chr12 6738919 6739234 -137543255 + AluY SINE Alu 1 311 0 969 176 32 68 chr12 6739276 6739497 -137542992 - MER20 DNA MER1_type 0 219 7 2146 125 0 28 chr12 6739669 6739988 -137542501 + AluSx SINE Alu 1 310 -2 719 264 103 35 chr12 6740322 6740670 -137541819 - LTR33A LTR ERVL -12 511 140 349 282 10 87 chr12 6740884 6740963 -137541526 + L1ME3 LINE L1 5973 6057 -105 2244 126 3 0 chr12 6740963 6741272 -137541217 + AluSg SINE Alu 1 310 0 349 282 10 87 chr12 6741272 6741398 -137541091 + L1ME3 LINE L1 6057 6162 0 519 208 51 97 chr12 6741452 6741668 -137540821 + L1MC5 LINE L1 7697 7902 -59 364 309 87 0 chr12 6742251 6742377 -137540112 - L2 LINE L2 0 3272 3136 180 303 79 0 chr12 6742636 6742712 -137539777 + MIR3 SINE MIR 106 187 -21 2718 30 3 0 chr12 6744895 6745193 -137537296 + AluY SINE Alu 1 299 -12 288 0 0 0 chr12 6745875 6745907 -137536582 + (CA)n Simple_repeat Simple_repeat 2 33 0 713 308 5 19 chr12 6746209 6746420 -137536069 - MIR SINE MIR -30 232 25 363 273 121 9 chr12 6746423 6746654 -137535835 - L1ME4a LINE L1 -21 6100 5844 406 246 204 0 chr12 6746690 6746832 -137535657 - MIR3 SINE MIR -18 190 20 1265 218 102 14 chr12 6748195 6748557 -137533932 - L2 LINE L2 0 3313 2920 271 194 0 60 chr12 6748631 6748698 -137533791 + AluJo SINE Alu 85 147 -155 2247 93 0 4 chr12 6748813 6749093 -137533396 + AluSx SINE Alu 24 302 -10 879 168 0 13 chr12 6749104 6749253 -137533236 + FRAM SINE Alu 26 172 -4 331 171 26 0 chr12 6749253 6749329 -137533160 + GA-rich Low_complexity Low_complexity 1 78 0 839 212 88 14 chr12 6750967 6751184 -137531305 - MIR SINE MIR -2 260 28 1901 153 3 10 chr12 6751379 6751680 -137530809 - AluJo SINE Alu -13 299 1 1723 175 7 20 chr12 6752370 6752662 -137529827 - AluJo SINE Alu -22 290 3 1938 169 54 16 chr12 6752671 6753044 -137529445 - MLT1B LTR MaLR -3 387 1 804 310 40 23 chr12 6753429 6753826 -137528663 + L1M3b LINE L1 1 404 -5877 498 317 50 19 chr12 6754107 6754366 -137528123 + MLT1L LTR MaLR 322 588 -27 893 197 0 0 chr12 6754651 6754803 -137527686 + MER44D DNA MER2_type 13 164 -541 815 211 45 34 chr12 6755141 6755480 -137527009 + LTR35 LTR ERV1 198 618 0 1751 162 17 5 chr12 6755480 6755996 -137526493 + MER44D DNA MER2_type 160 605 0 1042 261 53 78 chr12 6756014 6756342 -137526147 - L1MC4a LINE L1 -1913 5895 5560 2547 58 0 3 chr12 6756342 6756637 -137525852 - AluY SINE Alu -17 294 1 1042 261 53 78 chr12 6756637 6756891 -137525598 - L1MC4a LINE L1 -2248 5560 5326 1968 135 37 7 chr12 6756891 6757187 -137525302 - AluJb SINE Alu -7 305 1 1042 261 53 78 chr12 6757187 6757208 -137525281 - L1MC4a LINE L1 -2482 5326 5306 260 303 103 44 chr12 6757304 6757588 -137524901 - L1MC4a LINE L1 -1307 4839 4516 2487 92 0 0 chr12 6757588 6757892 -137524597 - AluSx SINE Alu -8 304 1 260 303 103 44 chr12 6757892 6758063 -137524426 - L1MC4a LINE L1 -1630 4516 4357 2551 77 0 0 chr12 6758115 6758426 -137524063 - AluY SINE Alu 0 311 1 877 164 0 14 chr12 6758474 6758614 -137523875 - AluJo SINE Alu -174 138 1 906 150 0 14 chr12 6758662 6758802 -137523687 - AluJo SINE Alu -174 138 1 927 143 0 14 chr12 6758850 6758990 -137523499 - AluJo SINE Alu -174 138 1 279 320 74 0 chr12 6758994 6759116 -137523373 - L1MC4a LINE L1 -1982 4164 4034 198 284 15 0 chr12 6759245 6759312 -137523177 - L2 LINE L2 -747 2567 2500 290 339 41 39 chr12 6759556 6759838 -137522651 - L2 LINE L2 -205 3067 2736 315 226 16 0 chr12 6759854 6759916 -137522573 + L1MC4 LINE L1 6640 6702 -1340 202 158 0 26 chr12 6759918 6759956 -137522533 + (TA)n Simple_repeat Simple_repeat 2 38 0 261 0 0 0 chr12 6759961 6759990 -137522499 + (TG)n Simple_repeat Simple_repeat 2 30 0 2089 111 39 0 chr12 6759997 6760277 -137522212 - AluSx SINE Alu -21 291 1 449 256 47 0 chr12 6760288 6760417 -137522072 - L1ME3 LINE L1 -30 6132 5998 2100 137 13 0 chr12 6760516 6760816 -137521673 - AluSq SINE Alu -9 304 1 1661 129 47 35 chr12 6760829 6761147 -137521342 - L1MD3 LINE L1 0 7995 7674 1477 177 15 11 chr12 6761147 6761413 -137521076 + AluJb SINE Alu 46 312 0 676 129 39 25 chr12 6761416 6761548 -137520941 - L1ME3 LINE L1 -568 5594 5455 2055 79 0 0 chr12 6761726 6761978 -137520511 - AluY SINE Alu 0 311 60 2499 224 76 19 chr12 6762195 6762390 -137520099 - L1MC/D LINE L1 -743 6198 6016 2202 125 0 22 chr12 6762390 6762526 -137519963 + AluSx SINE Alu 1 138 -174 2417 86 3 10 chr12 6762526 6762840 -137519649 + AluSp SINE Alu 1 312 -1 2202 125 0 22 chr12 6762840 6763022 -137519467 + AluSx SINE Alu 138 312 0 2499 224 76 19 chr12 6763022 6763773 -137518716 - L1MC/D LINE L1 -925 6016 5291 1720 170 6 45 chr12 6763777 6764088 -137518401 - AluJo SINE Alu -13 299 1 302 282 75 65 chr12 6764241 6764642 -137517847 - L1MC5 LINE L1 -62 7899 7495 284 261 76 0 chr12 6764641 6764760 -137517729 - L1MC5 LINE L1 -1201 6760 6633 * 2441 80 0 0 chr12 6764777 6765078 -137517411 - AluSx SINE Alu -11 301 1 453 298 98 30 chr12 6765689 6765924 -137516565 - ERVL LTR ERVL -1154 4610 4360 635 301 58 55 chr12 6765952 6766065 -137516424 - ERVL LTR ERVL -1496 4268 4157 2396 92 0 0 chr12 6766065 6766359 -137516130 - AluSx SINE Alu -12 300 7 635 301 58 55 chr12 6766359 6766740 -137515749 - ERVL LTR ERVL -1607 4157 3772 299 261 225 0 chr12 6766810 6766921 -137515568 - MIR SINE MIR 0 262 127 2189 122 13 0 chr12 6767009 6767351 -137515138 - AluSx SINE Alu 0 312 1 404 238 29 0 chr12 6767359 6767464 -137515025 - L1MC/D LINE L1 -1662 5279 5172 869 201 68 93 chr12 6767484 6767516 -137514973 - L1MCb LINE L1 -4620 2502 2471 2112 105 40 7 chr12 6767516 6767812 -137514677 - AluSq SINE Alu -7 306 1 869 201 68 93 chr12 6767812 6767910 -137514579 - L1MCb LINE L1 -4651 2471 2372 845 165 0 0 chr12 6767910 6768043 -137514446 + FLAM_C SINE Alu 1 133 0 869 201 68 93 chr12 6768043 6768064 -137514425 - L1MCb LINE L1 -4750 2372 2352 2092 107 71 0 chr12 6768064 6768344 -137514145 + AluSx SINE Alu 1 300 -12 869 201 68 93 chr12 6768344 6768654 -137513835 - L1MCb LINE L1 -4770 2352 2036 186 43 0 0 chr12 6768654 6768677 -137513812 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 869 201 68 93 chr12 6768677 6768817 -137513672 - L1MCb LINE L1 -5086 2036 1681 1083 217 103 75 chr12 6769309 6769581 -137512908 - L1MCb LINE L1 -4852 1570 1307 2033 133 13 32 chr12 6769581 6769897 -137512592 - AluSg SINE Alu 0 310 1 1083 217 103 75 chr12 6769897 6770387 -137512102 - L1MCb LINE L1 -5115 1307 814 2133 124 17 0 chr12 6770507 6770805 -137511684 - AluSx SINE Alu -9 303 1 350 210 48 29 chr12 6771122 6771270 -137511219 - L1MCb LINE L1 -5890 532 52 1702 93 4 9 chr12 6771340 6771565 -137510924 - AluSg/x SINE Alu -16 296 73 1407 213 39 58 chr12 6771565 6771810 -137510679 - L1MCa LINE L1 -1453 4973 4738 2195 119 0 0 chr12 6771810 6772104 -137510385 - AluSx SINE Alu -14 298 5 1407 213 39 58 chr12 6772104 6772290 -137510199 - L1MCa LINE L1 -1688 4738 4550 2035 125 0 7 chr12 6772290 6772579 -137509910 + AluSx SINE Alu 1 287 -25 5215 199 51 38 chr12 6772587 6772932 -137509557 - L1MCa LINE L1 -2438 3988 3649 2242 110 3 3 chr12 6772932 6773233 -137509256 - AluSq SINE Alu -12 301 1 5215 199 51 38 chr12 6773233 6774283 -137508206 - L1MCa LINE L1 -2777 3649 2556 2371 110 0 3 chr12 6774283 6774593 -137507896 - AluSg SINE Alu -1 309 1 5215 199 51 38 chr12 6774593 6775221 -137507268 - L1MCa LINE L1 -3870 2556 1937 1049 105 0 0 chr12 6775221 6775354 -137507135 + AluSq/x SINE Alu 1 133 -179 2075 157 0 3 chr12 6775366 6775679 -137506810 + AluSx SINE Alu 1 312 0 238 364 178 0 chr12 6775778 6775896 -137506593 - L2 LINE L2 0 3272 3134 425 347 113 24 chr12 6775988 6776490 -137505999 + L2 LINE L2 863 1409 -1905 401 167 3 0 chr12 6776504 6776588 -137505901 + L1ME2 LINE L1 5459 5543 -619 2891 148 60 21 chr12 6776592 6777126 -137505363 - MER21A LTR ERV1 0 931 377 1387 107 95 8 chr12 6777132 6777375 -137505114 - MER21A LTR ERV1 -667 264 1 1563 168 35 17 chr12 6777378 6777723 -137504766 + L1ME2 LINE L1 5546 5896 -268 1905 129 9 44 chr12 6777731 6778048 -137504441 + AluSq SINE Alu 1 306 -7 618 168 44 0 chr12 6778054 6778167 -137504322 - L1ME LINE L1 -421 5700 5583 221 333 55 36 chr12 6778268 6778433 -137504056 + L2 LINE L2 3105 3272 -41 299 233 23 33 chr12 6778685 6778824 -137503665 - MER91 DNA MER1_type -7 189 8 193 345 18 35 chr12 6778842 6778955 -137503534 + L2 LINE L2 2981 3091 -181 1904 141 17 7 chr12 6779011 6779308 -137503181 + AluJb SINE Alu 1 300 -12 2542 68 7 0 chr12 6779376 6779684 -137502805 - AluSg SINE Alu 0 310 1 215 250 39 0 chr12 6779704 6779756 -137502733 + L2 LINE L2 3258 3311 -2 240 326 45 11 chr12 6779760 6779849 -137502640 + MIR3 SINE MIR 102 193 -15 2227 104 0 3 chr12 6780528 6780847 -137501642 - AluSx SINE Alu 0 312 1 258 32 0 0 chr12 6780859 6780890 -137501599 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 1359 121 0 0 chr12 6780890 6781072 -137501417 - AluSg/x SINE Alu -2 310 129 2445 82 26 0 chr12 6781072 6781376 -137501113 - AluSx SINE Alu 0 312 1 683 162 8 17 chr12 6781403 6781520 -137500969 + AluJo/FLAM SINE Alu 3 118 -194 2171 105 3 14 chr12 6781520 6781842 -137500647 - AluSg SINE Alu 0 310 1 2471 93 0 3 chr12 6781895 6782205 -137500284 - AluSc SINE Alu 0 309 1 3159 117 7 7 chr12 6782436 6782899 -137499590 - L1PB4 LINE L1 0 6156 5694 25 0 0 0 chr12 6783668 6783693 -137498796 + AT_rich Low_complexity Low_complexity 1 25 0 342 236 55 29 chr12 6783956 6784109 -137498380 + MLT2E LTR ERVL 1 154 -474 592 273 47 13 chr12 6784128 6784523 -137497966 + MLT2F LTR ERVL 213 661 -2 25 0 0 0 chr12 6784671 6784696 -137497793 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr12 6784729 6784760 -137497729 + AT_rich Low_complexity Low_complexity 1 31 0 2040 148 0 3 chr12 6784760 6785065 -137497424 + AluJb SINE Alu 2 305 -7 1728 146 0 43 chr12 6785741 6786022 -137496467 + AluSx SINE Alu 1 269 -43 186 0 88 0 chr12 6786059 6786093 -137496396 + A-rich Low_complexity Low_complexity 2 38 0 1959 137 16 22 chr12 6786528 6786842 -137495647 + AluJb SINE Alu 1 312 0 4081 181 27 45 chr12 6786846 6786867 -137495622 + L1MB7 LINE L1 4357 4377 -1803 2271 115 3 6 chr12 6786867 6787181 -137495308 + AluSq SINE Alu 1 313 0 4081 181 27 45 chr12 6787181 6787231 -137495258 + L1MB7 LINE L1 4377 4426 -1754 2227 123 0 3 chr12 6787231 6787532 -137494957 + AluSx SINE Alu 1 300 -12 4081 181 27 45 chr12 6787532 6788254 -137494235 + L1MB7 LINE L1 4426 5159 -1021 2500 51 7 0 chr12 6788254 6788549 -137493940 - AluY SINE Alu -14 297 1 4081 181 27 45 chr12 6788549 6788622 -137493867 + L1MB7 LINE L1 5159 5232 -948 2328 63 0 48 chr12 6788622 6788937 -137493552 - AluY SINE Alu -11 300 1 4081 181 27 45 chr12 6788937 6789222 -137493267 + L1MB7 LINE L1 5232 5488 -692 287 193 91 0 chr12 6789229 6789317 -137493172 + L1MB7 LINE L1 6073 6168 -16 725 323 88 23 chr12 6789754 6790323 -137492166 + L1MC4a LINE L1 5347 5952 -1856 1767 189 10 0 chr12 6790440 6790741 -137491748 + AluJo SINE Alu 1 304 -8 22 0 0 0 chr12 6791156 6791178 -137491311 + AT_rich Low_complexity Low_complexity 1 22 0 2260 104 0 0 chr12 6791184 6791497 -137490992 + AluSc SINE Alu 1 313 0 2240 134 3 0 chr12 6791497 6791804 -137490685 + AluSq SINE Alu 1 308 -5 1986 136 34 0 chr12 6791831 6792126 -137490363 + AluSx SINE Alu 8 312 0 338 130 91 26 chr12 6792523 6792600 -137489889 - L1ME3A LINE L1 -208 5962 5881 472 101 56 11 chr12 6792648 6792737 -137489752 - L1MB4 LINE L1 -1 6179 6087 335 244 16 32 chr12 6792738 6792861 -137489628 - L1ME3A LINE L1 -296 5874 5754 638 174 39 0 chr12 6792864 6793019 -137489470 + CT-rich Low_complexity Low_complexity 3 163 0 1697 138 0 0 chr12 6793020 6793260 -137489229 - AluSx SINE Alu -64 248 9 180 0 0 0 chr12 6793264 6793284 -137489205 + (CTTG)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr12 6793435 6793464 -137489025 + AT_rich Low_complexity Low_complexity 1 29 0 378 175 184 19 chr12 6793661 6793764 -137488725 + MIR SINE MIR 31 150 -58 424 219 102 71 chr12 6793976 6794172 -137488317 + MER63A DNA MER1_type 2 203 -7 2005 118 0 70 chr12 6794418 6794557 -137487932 + AluJb SINE Alu 7 113 -199 2316 89 3 0 chr12 6794557 6794850 -137487639 + AluSp SINE Alu 2 295 -18 2005 118 0 70 chr12 6794850 6795025 -137487464 + AluJb SINE Alu 113 299 -13 2369 103 3 0 chr12 6795047 6795348 -137487141 + AluSx SINE Alu 1 302 -10 264 372 92 9 chr12 6795601 6795819 -137486670 - MIR SINE MIR -6 256 21 1567 114 72 50 chr12 6796159 6796445 -137486044 + AluJo SINE Alu 14 305 0 2522 71 0 3 chr12 6796447 6796757 -137485732 + AluY SINE Alu 1 309 -2 524 304 18 28 chr12 6796758 6796975 -137485514 + L1MEd LINE L1 473 687 -5432 709 126 10 0 chr12 6797047 6797150 -137485339 - FLAM_C SINE Alu -32 111 8 355 229 120 17 chr12 6797218 6797393 -137485096 + Charlie7 DNA MER1_type 2205 2397 -215 663 144 10 0 chr12 6797511 6797608 -137484881 - AluJ/FLAM SINE Alu -213 99 2 26 30 0 0 chr12 6797709 6797742 -137484747 + AT_rich Low_complexity Low_complexity 1 33 0 751 247 102 23 chr12 6798512 6798601 -137483888 + L1MEd LINE L1 2661 2742 -3387 1850 199 84 31 chr12 6798601 6799079 -137483410 - MLT1D LTR MaLR 0 505 3 751 247 102 23 chr12 6799079 6799381 -137483108 + L1MEd LINE L1 2742 3083 -3046 2101 131 7 0 chr12 6799382 6799680 -137482809 + AluSx SINE Alu 2 301 -11 21 0 0 0 chr12 6799759 6799780 -137482709 + AT_rich Low_complexity Low_complexity 1 21 0 1910 152 0 19 chr12 6800011 6800327 -137482162 - AluJo SINE Alu -2 310 1 390 316 19 52 chr12 6800348 6800503 -137481986 + L2 LINE L2 3121 3270 -2 2303 114 0 9 chr12 6801440 6801755 -137480734 + AluSx SINE Alu 1 312 0 981 132 0 0 chr12 6801972 6802108 -137480381 + AluSq/x SINE Alu 1 136 -177 1585 165 110 0 chr12 6802108 6802380 -137480109 + AluSg SINE Alu 1 302 -8 792 220 129 4 chr12 6803587 6803819 -137478670 + MER46C DNA MER2_type 78 338 0 877 232 0 0 chr12 6805570 6805734 -137476755 - FRAM SINE Alu -1 165 2 1275 156 66 80 chr12 6805763 6806046 -137476443 + AluJb SINE Alu 3 282 -26 216 0 0 0 chr12 6806046 6806070 -137476419 + (CA)n Simple_repeat Simple_repeat 1 24 0 1967 141 0 33 chr12 6806080 6806386 -137476103 + AluJb SINE Alu 9 304 -8 188 237 0 0 chr12 6806748 6806786 -137475703 + MIR SINE MIR 109 146 -62 216 0 0 0 chr12 6806889 6806913 -137475576 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1982 46 8 0 chr12 6806916 6807154 -137475335 - L1PA5 LINE L1 -13 6141 5902 2177 94 7 3 chr12 6807768 6808055 -137474434 + AluSg SINE Alu 16 303 -7 555 163 71 21 chr12 6808097 6808211 -137474278 - L1MB7 LINE L1 -78 6106 5999 213 39 0 0 chr12 6808211 6808237 -137474252 + (CCCCAG)n Simple_repeat Simple_repeat 3 28 0 555 163 71 21 chr12 6808237 6808255 -137474234 - L1MB7 LINE L1 -185 5999 5983 2135 138 0 3 chr12 6808255 6808566 -137473923 - AluJb SINE Alu -2 310 1 1018 91 0 0 chr12 6808573 6808705 -137473784 - AluSg/x SINE Alu 0 309 178 332 239 60 0 chr12 6808709 6808826 -137473663 + L1ME3A LINE L1 6043 6166 -4 2316 113 0 3 chr12 6808838 6809147 -137473342 + AluSq SINE Alu 1 308 -5 2358 101 10 0 chr12 6813005 6813312 -137469177 + AluSq SINE Alu 1 310 -3 2194 122 3 0 chr12 6813456 6813760 -137468729 + AluSx SINE Alu 1 305 -7 494 214 24 71 chr12 6814333 6814501 -137467988 - L1MC4 LINE L1 -16 8026 7867 613 229 13 38 chr12 6814653 6814810 -137467679 + MER97a DNA MER1_type? 27 179 -715 704 119 9 37 chr12 6814922 6815031 -137467458 + FLAM_A SINE Alu 4 109 -33 2265 107 10 0 chr12 6815033 6815324 -137467165 - AluSx SINE Alu -18 294 1 629 242 96 42 chr12 6815363 6815623 -137466866 - L1MC4 LINE L1 -313 7729 7456 2095 88 4 0 chr12 6815633 6815894 -137466595 - AluSp SINE Alu -13 300 39 2461 89 6 10 chr12 6815907 6816221 -137466268 - AluSq SINE Alu 0 313 1 246 224 0 0 chr12 6816294 6816343 -137466146 - MIR SINE MIR -157 105 57 336 222 70 105 chr12 6817339 6817374 -137465115 - MER97a DNA MER1_type? -727 167 132 2266 87 35 0 chr12 6817374 6817660 -137464829 + AluSg SINE Alu 1 296 -14 336 222 70 105 chr12 6817660 6817795 -137464694 - MER97a DNA MER1_type? -762 132 3 255 264 85 28 chr12 6818430 6818536 -137463953 - L2 LINE L2 -39 3233 3122 208 351 40 60 chr12 6818552 6818703 -137463786 - L2 LINE L2 -277 2995 2848 383 298 193 6 chr12 6818727 6818908 -137463581 - MIR SINE MIR -13 249 35 351 0 0 0 chr12 6818993 6819032 -137463457 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2200 123 3 0 chr12 6819034 6819334 -137463155 - AluSx SINE Alu -11 301 1 1997 136 0 4 chr12 6819514 6819829 -137462660 - AluSx SINE Alu 0 316 3 180 0 0 0 chr12 6824075 6824095 -137458394 + (CAGG)n Simple_repeat Simple_repeat 1 20 0 366 107 0 0 chr12 6824623 6824679 -137457810 + (TA)n Simple_repeat Simple_repeat 1 56 0 303 28 0 0 chr12 6824679 6824715 -137457774 + (TG)n Simple_repeat Simple_repeat 2 37 0 949 128 0 0 chr12 6825620 6825753 -137456736 + FLAM_A SINE Alu 1 133 0 2780 65 8 0 chr12 6826047 6826399 -137456090 + THE1A LTR MaLR 1 355 0 2889 48 0 3 chr12 6826399 6826770 -137455719 + THE1A-int LTR MaLR 1 370 -1210 4761 114 3 1 chr12 6826781 6827465 -137455024 + THE1A-int LTR MaLR 482 1166 -414 267 287 201 12 chr12 6830490 6830654 -137451835 + L2 LINE L2 2335 2529 -785 1390 185 61 37 chr12 6830708 6830764 -137451725 - HsTC2 DNA Tc2 -22 1876 1823 2269 97 7 3 chr12 6830764 6831062 -137451427 + AluSx SINE Alu 1 299 -13 1390 185 61 37 chr12 6831062 6831415 -137451074 - HsTC2 DNA Tc2 -75 1823 1281 188 260 0 52 chr12 6831566 6831643 -137450846 + L2 LINE L2 2641 2713 -601 999 169 5 31 chr12 6831786 6831966 -137450523 + AluJo SINE Alu 123 299 -13 2102 132 26 0 chr12 6831966 6832270 -137450219 + AluSx SINE Alu 1 312 0 999 169 5 31 chr12 6832270 6832284 -137450205 + AluJo SINE Alu 299 312 0 1910 143 0 28 chr12 6832385 6832672 -137449817 + AluJb SINE Alu 11 289 -23 2631 45 0 13 chr12 6832691 6832999 -137449490 - AluY SINE Alu -7 304 1 2578 174 73 90 chr12 6832999 6833780 -137448709 - L1MD2 LINE L1 -10 6349 5582 608 170 75 0 chr12 6833785 6833879 -137448610 - FLAM_A SINE Alu -41 101 1 605 181 39 19 chr12 6833885 6834040 -137448449 - L1MD2 LINE L1 -879 5480 5323 7445 42 3 200 chr12 6834040 6835410 -137447079 - SVA Other Other -4 1382 283 1281 103 6 0 chr12 6835410 6835575 -137446914 - AluSq SINE Alu -134 179 14 335 296 35 52 chr12 6835613 6835728 -137446761 - HAL1 LINE L1 -1230 1277 1165 513 317 27 0 chr12 6835728 6835914 -137446575 - L1MEd LINE L1 -5368 751 561 607 177 54 20 chr12 6836385 6836532 -137445957 + L1M4 LINE L1 4695 4846 -1300 2455 77 0 3 chr12 6836541 6836840 -137445649 - AluSc SINE Alu -11 298 1 26 0 0 0 chr12 6840123 6840149 -137442340 + AT_rich Low_complexity Low_complexity 1 26 0 2290 73 45 7 chr12 6840308 6840597 -137441892 - AluSg SINE Alu -10 300 1 21 36 0 0 chr12 6841026 6841054 -137441435 + AT_rich Low_complexity Low_complexity 1 28 0 2300 92 3 3 chr12 6841438 6841731 -137440758 + AluSg SINE Alu 1 293 -17 1634 202 14 10 chr12 6841881 6842178 -137440311 + AluJo SINE Alu 1 298 -14 729 110 39 58 chr12 6842187 6842320 -137440169 + L1MB5 LINE L1 5823 5954 -224 2095 114 3 24 chr12 6842320 6842617 -137439872 + AluSx SINE Alu 18 308 -4 729 110 39 58 chr12 6842617 6842637 -137439852 + L1MB5 LINE L1 5954 5973 -205 1671 148 0 0 chr12 6842638 6842868 -137439621 + AluSx SINE Alu 1 230 -82 329 219 79 53 chr12 6842910 6843024 -137439465 + L1MB5 LINE L1 5977 6093 -81 2227 106 0 7 chr12 6843037 6843329 -137439160 + AluSc SINE Alu 1 290 -19 1431 136 37 0 chr12 6843329 6843602 -137438887 + L1MA8 LINE L1 6009 6291 0 538 193 18 0 chr12 6843611 6843725 -137438764 + L1MB7 LINE L1 6050 6165 -19 183 80 0 0 chr12 6843902 6843927 -137438562 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 696 170 36 0 chr12 6843927 6844039 -137438450 - AluJb SINE Alu -195 117 2 310 267 0 116 chr12 6844040 6844108 -137438381 - HAL1 LINE L1 -139 2368 2294 1889 139 3 58 chr12 6844108 6844248 -137438241 - AluJb SINE Alu 0 312 166 2480 81 0 7 chr12 6844248 6844555 -137437934 - AluSg SINE Alu -5 305 1 1889 139 3 58 chr12 6844555 6844744 -137437745 - AluJb SINE Alu -146 166 1 2130 130 0 3 chr12 6844754 6845079 -137437410 - AluSx SINE Alu 0 324 1 310 267 0 116 chr12 6845079 6845144 -137437345 - HAL1 LINE L1 -223 2284 2240 * 477 327 99 5 chr12 6845143 6845345 -137437144 + L1 LINE L1 3893 4113 -2033 1462 80 9 38 chr12 6845345 6845521 -137436968 - AluSg/x SINE Alu -1 309 138 2183 91 0 18 chr12 6845521 6845834 -137436655 - AluSq SINE Alu 0 313 9 1462 80 9 38 chr12 6845834 6845870 -137436619 - AluSg/x SINE Alu -172 138 103 1675 128 6 106 chr12 6845922 6846251 -137436238 - AluJo SINE Alu -10 302 7 2341 97 0 0 chr12 6846348 6846647 -137435842 + AluY SINE Alu 1 299 -12 1615 116 16 0 chr12 6846653 6846903 -137435586 - L1M4 LINE L1 -382 5802 5549 2489 65 0 0 chr12 6846914 6847206 -137435283 - AluY SINE Alu -19 292 1 266 254 162 81 chr12 6847323 6847496 -137434993 + L2 LINE L2 2897 3083 -189 1994 156 0 22 chr12 6847593 6847908 -137434581 - AluSx SINE Alu -4 308 1 186 43 0 0 chr12 6847969 6847992 -137434497 + (A)n Simple_repeat Simple_repeat 1 23 0 799 293 52 40 chr12 6848093 6848229 -137434260 + HERV16 LTR ERVL 2404 2537 -2459 1992 150 3 16 chr12 6848229 6848543 -137433946 - AluJb SINE Alu -1 311 2 2310 102 10 0 chr12 6848551 6848855 -137433634 - AluSp SINE Alu -6 307 1 799 293 52 40 chr12 6848855 6849033 -137433456 + HERV16 LTR ERVL 2543 2731 -2265 2251 97 3 13 chr12 6849056 6849356 -137433133 - AluSg SINE Alu -4 306 10 1149 143 104 137 chr12 6849875 6850182 -137432307 - AluJo SINE Alu -5 297 1 1517 160 15 108 chr12 6850193 6850394 -137432095 - AluJo SINE Alu 0 302 143 2086 100 16 48 chr12 6850394 6850704 -137431785 - AluY SINE Alu -11 300 1 1517 160 15 108 chr12 6850704 6850834 -137431655 - AluJo SINE Alu -159 143 2 21 0 0 0 chr12 6850842 6850863 -137431626 + AT_rich Low_complexity Low_complexity 1 21 0 375 244 94 17 chr12 6851817 6851997 -137430492 + MIR SINE MIR 1 262 0 405 309 7 33 chr12 6852785 6852937 -137429552 - MIR SINE MIR -80 182 35 332 274 92 30 chr12 6853614 6853778 -137428711 + MIR SINE MIR 87 260 -2 634 164 141 16 chr12 6855038 6855166 -137427323 + MIR SINE MIR 9 152 -110 2323 114 0 7 chr12 6855282 6855589 -137426900 - AluSx SINE Alu -2 310 6 1791 164 0 23 chr12 6855640 6855939 -137426550 - AluJb SINE Alu 0 312 21 689 179 0 0 chr12 6855939 6856045 -137426444 - AluJb SINE Alu -59 253 148 234 179 0 0 chr12 6856045 6856084 -137426405 - AluJb SINE Alu -262 39 1 465 101 25 25 chr12 6856084 6856163 -137426326 - Tigger3(Golem) DNA MER2_type -673 2356 2278 * 507 219 29 0 chr12 6856154 6856259 -137426230 - Tigger3(Golem) DNA MER2_type -2921 108 1 2086 93 100 3 chr12 6856535 6856846 -137425643 - L1PA10 LINE L1 -10 6158 5818 2320 97 3 0 chr12 6856851 6857151 -137425338 - AluSg SINE Alu -9 301 1 1674 145 86 21 chr12 6857153 6857443 -137425046 - AluJb SINE Alu -3 309 1 496 250 103 51 chr12 6857534 6857690 -137424799 - L2 LINE L2 -1 3312 3149 2328 147 47 33 chr12 6857693 6857847 -137424642 - MER44D DNA MER2_type -1892 595 445 2219 89 10 3 chr12 6857847 6858138 -137424351 - AluSc SINE Alu -16 293 1 2328 147 47 33 chr12 6858138 6858433 -137424056 - MER44D DNA MER2_type -2042 445 85 1143 173 0 5 chr12 6858434 6858619 -137423870 - AluJb SINE Alu -1 311 128 2105 126 0 13 chr12 6858624 6858926 -137423563 - AluSx SINE Alu -14 298 1 507 194 0 10 chr12 6858926 6859024 -137423465 - MER44D DNA MER2_type -608 97 1 2923 229 182 123 chr12 6859024 6859073 -137423416 - L2 LINE L2 -163 3150 3105 2019 149 3 7 chr12 6859073 6859375 -137423114 + AluJb SINE Alu 1 301 -11 530 181 133 0 chr12 6859380 6859485 -137423004 + FLAM_A SINE Alu 2 120 -13 2923 229 182 123 chr12 6859485 6859767 -137422722 - L2 LINE L2 -211 3102 2838 518 216 116 88 chr12 6859767 6859948 -137422541 + MER5A DNA MER1_type 4 189 0 2923 229 182 123 chr12 6859948 6860291 -137422198 - L2 LINE L2 -475 2838 2517 1068 116 23 52 chr12 6860291 6860463 -137422026 - AluSg/x SINE Alu -13 299 133 1484 116 209 8 chr12 6860463 6860722 -137421767 - AluY SINE Alu 0 311 1 2923 229 182 123 chr12 6860722 6861816 -137420673 - L2 LINE L2 -795 2518 1095 1021 133 20 0 chr12 6861903 6862054 -137420435 + FRAM SINE Alu 1 154 -22 2039 95 24 44 chr12 6862067 6862389 -137420100 - AluSg SINE Alu 0 316 1 1106 258 52 27 chr12 6862509 6862724 -137419765 - MSTD LTR MaLR -15 381 173 2359 71 0 4 chr12 6862724 6863004 -137419485 + AluSg SINE Alu 1 279 -31 1106 258 52 27 chr12 6863004 6863025 -137419464 - MSTD LTR MaLR -223 173 154 1488 94 0 5 chr12 6863025 6863217 -137419272 + AluSg/x SINE Alu 94 284 -25 1106 258 52 27 chr12 6863217 6863348 -137419141 - MSTD LTR MaLR -242 154 4 570 41 0 0 chr12 6863405 6863478 -137419011 + (TA)n Simple_repeat Simple_repeat 1 73 0 1123 159 56 24 chr12 6863481 6863622 -137418867 - Tigger2 DNA MER2_type -3 2715 2580 195 42 0 0 chr12 6863622 6863646 -137418843 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2027 133 4 0 chr12 6863647 6863926 -137418563 - AluSx SINE Alu -32 280 1 1123 159 56 24 chr12 6863926 6864033 -137418456 - Tigger2 DNA MER2_type -137 2581 2457 3080 131 8 82 chr12 6864076 6864307 -137418182 - Tigger2 DNA MER2_type -1974 744 497 2145 102 7 7 chr12 6864307 6864600 -137417889 - AluSq SINE Alu -20 293 1 3080 131 8 82 chr12 6864600 6864791 -137417698 - Tigger2 DNA MER2_type -2221 497 293 1805 153 6 80 chr12 6864791 6865117 -137417372 + AluSx SINE Alu 1 302 -10 3080 131 8 82 chr12 6865117 6865194 -137417295 - Tigger2 DNA MER2_type -2425 293 212 1793 191 10 0 chr12 6865194 6865492 -137416997 - AluJb SINE Alu -11 301 1 3080 131 8 82 chr12 6865492 6865540 -137416949 - Tigger2 DNA MER2_type -2506 212 245 2438 57 0 10 chr12 6865540 6865839 -137416650 + AluY SINE Alu 1 296 -15 3080 131 8 82 chr12 6865839 6865921 -137416568 - Tigger2 DNA MER2_type -2472 246 159 1110 185 0 0 chr12 6865925 6866098 -137416391 + FRAM SINE Alu 1 165 -11 375 218 13 0 chr12 6866098 6866176 -137416313 - Tigger2 DNA MER2_type -2639 79 1 * 785 268 21 0 chr12 6866176 6866368 -137416121 + L1MC4 LINE L1 6689 6884 -1158 791 161 0 0 chr12 6866368 6866498 -137415991 - FLAM_C SINE Alu 0 143 14 270 178 0 0 chr12 6866545 6866590 -137415899 + FLAM_A SINE Alu 1 45 -86 2258 124 26 0 chr12 6866590 6866929 -137415560 - LTR10D LTR ERV1 0 513 166 1219 159 29 0 chr12 6866936 6867175 -137415314 - LTR10D LTR ERV1 -265 248 3 557 158 10 0 chr12 6867175 6867276 -137415213 + FLAM_A SINE Alu 39 140 -2 1690 132 33 50 chr12 6867283 6867586 -137414903 + AluJb SINE Alu 1 298 -14 3116 175 92 7 chr12 6867586 6868307 -137414182 + L1MC4a LINE L1 6838 7619 -189 2209 90 3 16 chr12 6868486 6868796 -137413693 - AluSq SINE Alu -7 306 1 236 51 0 51 chr12 6869401 6869440 -137413049 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2045 120 13 10 chr12 6870555 6870863 -137411626 - AluSq SINE Alu -4 309 1 2066 116 0 7 chr12 6870934 6871227 -137411262 + AluSq SINE Alu 1 291 -22 216 150 0 0 chr12 6871227 6871234 -137411255 + (TAGA)n Simple_repeat Simple_repeat 1 7 -33 2286 51 40 10 chr12 6871234 6871530 -137410959 + AluY SINE Alu 1 305 -6 216 150 0 0 chr12 6871530 6871562 -137410927 + (TAGA)n Simple_repeat Simple_repeat 6 40 0 3537 243 69 18 chr12 6871563 6872495 -137409994 - L2 LINE L2 -248 3065 2067 1611 121 110 8 chr12 6872495 6872759 -137409730 + AluJb SINE Alu 2 292 -20 3537 243 69 18 chr12 6872759 6872944 -137409545 - L2 LINE L2 -1246 2067 1893 2203 105 0 3 chr12 6872944 6873249 -137409240 - AluSg SINE Alu -6 304 1 1743 144 30 0 chr12 6874429 6874700 -137407789 - AluJo SINE Alu -14 298 20 2172 121 0 13 chr12 6875144 6875450 -137407039 + AluSx SINE Alu 1 302 -10 2263 82 0 0 chr12 6875459 6875752 -137406737 + AluSg SINE Alu 4 296 -14 354 263 40 66 chr12 6877482 6877634 -137404855 + MIR3 SINE MIR 77 206 -2 2257 104 0 13 chr12 6877739 6878055 -137404434 - AluSx SINE Alu 0 312 1 2388 44 0 17 chr12 6878127 6878424 -137404065 - AluY SINE Alu -19 292 1 685 117 15 209 chr12 6878591 6878787 -137403702 - FRAM SINE Alu -18 158 1 328 248 67 29 chr12 6878826 6878931 -137403558 - L1MC4a LINE L1 -1839 5969 5861 1054 149 29 11 chr12 6878942 6879117 -137403372 + AluSg/x SINE Alu 120 297 -15 1771 176 0 23 chr12 6879126 6879427 -137403062 + AluSx SINE Alu 1 294 -18 231 125 0 0 chr12 6879427 6879467 -137403022 + (TA)n Simple_repeat Simple_repeat 1 40 0 813 191 0 32 chr12 6879481 6879638 -137402851 - AluJ SINE Alu -21 291 140 555 186 10 10 chr12 6879702 6879804 -137402685 - AluJ SINE Alu -149 163 62 303 247 157 0 chr12 6879804 6879893 -137402596 - L1MC4a LINE L1 -1982 5826 5724 1602 181 13 25 chr12 6880634 6880948 -137401541 + AluJb SINE Alu 1 310 -2 799 155 0 49 chr12 6881325 6881467 -137401022 - AluJ SINE Alu -176 136 2 1755 146 13 17 chr12 6881538 6881839 -137400650 + AluJo SINE Alu 1 300 -12 2174 114 0 3 chr12 6882624 6882930 -137399559 - AluSg SINE Alu -4 306 2 859 235 77 20 chr12 6883135 6883382 -137399107 - MIR SINE MIR 0 262 2 337 270 30 10 chr12 6883423 6883523 -137398966 - L2 LINE L2 -218 3054 2953 2168 93 3 29 chr12 6883593 6883906 -137398583 + AluSx SINE Alu 1 305 -7 507 282 109 15 chr12 6888311 6888513 -137393976 + MIR SINE MIR 23 243 -19 1161 141 39 0 chr12 6889423 6889629 -137392860 - L1MC1 LINE L1 -1 6332 6119 1161 153 124 0 chr12 6889634 6889875 -137392614 - L1MC1 LINE L1 -252 6081 5811 2140 95 7 0 chr12 6890758 6891054 -137391435 + AluSp SINE Alu 1 298 -15 1102 213 19 5 chr12 6891429 6891645 -137390844 + MER20 DNA MER1_type 1 219 0 226 329 130 28 chr12 6897956 6898172 -137384317 + MIR SINE MIR 15 252 -10 318 308 88 40 chr12 6898269 6898418 -137384071 + MIR SINE MIR 15 180 -82 1862 124 3 7 chr12 6898418 6898700 -137383789 + AluSx SINE Alu 15 295 -17 318 308 88 40 chr12 6898700 6898777 -137383712 + MIR SINE MIR 180 252 -10 1440 115 74 0 chr12 6900043 6900260 -137382229 + AluSg SINE Alu 1 233 -77 284 289 24 0 chr12 6901483 6901566 -137380923 - HsTC2 DNA Tc2 -1813 85 1 3695 91 13 58 chr12 6902499 6902919 -137379570 + MER1A DNA MER1_type 1 392 -2308 2268 84 7 0 chr12 6902919 6903218 -137379271 + AluSp SINE Alu 1 301 -12 3695 91 13 58 chr12 6903218 6903349 -137379140 + MER1A DNA MER1_type 392 527 0 2072 113 3 10 chr12 6903400 6903701 -137378788 - AluSx SINE Alu -13 299 1 2364 48 0 3 chr12 6904165 6904487 -137378002 + AluY SINE Alu 1 311 0 4272 158 5 30 chr12 6904492 6904647 -137377842 + MER44D DNA MER2_type 7 164 -2323 2380 53 0 10 chr12 6904647 6904947 -137377542 + AluY SINE Alu 2 298 -13 4272 158 5 30 chr12 6904947 6905534 -137376955 + MER44D DNA MER2_type 164 603 -2 2402 48 0 19 chr12 6905712 6906021 -137376468 - AluY SINE Alu -8 303 1 425 227 21 50 chr12 6906219 6906360 -137376129 - MIR SINE MIR 0 262 126 1342 175 90 11 chr12 6906360 6906658 -137375831 + AluJo SINE Alu 1 312 0 1202 193 155 19 chr12 6906667 6906932 -137375557 + AluJb SINE Alu 1 301 -1 281 229 24 0 chr12 6906936 6907019 -137375470 + GA-rich Low_complexity Low_complexity 4 88 0 306 292 0 26 chr12 6907030 6907143 -137375346 - MIR SINE MIR -133 129 20 249 200 46 15 chr12 6908730 6908795 -137373694 + GA-rich Low_complexity Low_complexity 5 71 0 1046 148 79 30 chr12 6912803 6913006 -137369483 + AluJb SINE Alu 72 284 -28 23 68 0 0 chr12 6914746 6914790 -137367699 + GC_rich Low_complexity Low_complexity 1 44 0 28 0 0 0 chr12 6915080 6915108 -137367381 + GC_rich Low_complexity Low_complexity 1 28 0 2159 81 7 10 chr12 6915577 6915873 -137366616 - AluSx SINE Alu -17 295 1 2226 131 7 0 chr12 6917093 6917398 -137365091 + AluSx SINE Alu 1 307 -5 2230 103 27 0 chr12 6917505 6917797 -137364692 - AluSx SINE Alu -12 300 1 1068 119 0 7 chr12 6917833 6917984 -137364505 - AluJo SINE Alu -3 309 160 580 162 0 36 chr12 6917985 6918096 -137364393 - AluJo SINE Alu -204 108 2 1607 124 142 47 chr12 6918189 6918357 -137364132 - AluSx SINE Alu -10 302 97 2533 61 0 3 chr12 6918357 6918651 -137363838 - AluY SINE Alu -18 293 1 1607 124 142 47 chr12 6918651 6918756 -137363733 - AluSx SINE Alu -215 97 3 294 233 213 64 chr12 6920581 6920783 -137361706 - MIR SINE MIR -24 238 7 2292 93 3 10 chr12 6921221 6921521 -137360968 - AluSx SINE Alu -12 300 3 1236 99 0 6 chr12 6923364 6923526 -137358963 + AluSg/x SINE Alu 138 298 -12 2318 76 7 7 chr12 6923671 6923961 -137358528 - AluSx SINE Alu -22 290 1 1873 131 6 85 chr12 6924385 6924578 -137357911 - AluJo SINE Alu -9 303 145 2172 133 3 0 chr12 6924578 6924872 -137357617 - AluSx SINE Alu -17 295 1 1873 131 6 85 chr12 6924872 6925007 -137357482 - AluJo SINE Alu -167 145 1 1680 115 99 0 chr12 6926207 6926450 -137356039 - AluSq SINE Alu -14 299 33 187 367 10 0 chr12 6926454 6926552 -137355937 + MIR SINE MIR 150 248 -14 2290 76 41 0 chr12 6927884 6928175 -137354314 + AluSq SINE Alu 1 303 -10 2277 71 34 17 chr12 6928177 6928472 -137354017 + AluSc SINE Alu 1 300 -9 602 124 29 109 chr12 6928523 6928660 -137353829 - FLAM_C SINE Alu -7 126 1 276 241 241 9 chr12 6929001 6929117 -137353372 - MIR SINE MIR -57 205 63 2067 91 34 47 chr12 6930776 6930915 -137351574 + AluSp SINE Alu 1 140 -173 2375 84 3 3 chr12 6930915 6931212 -137351277 + AluSq SINE Alu 5 301 -12 2067 91 34 47 chr12 6931212 6931370 -137351119 + AluSp SINE Alu 140 294 -19 2234 118 10 0 chr12 6931379 6931676 -137350813 + AluSx SINE Alu 1 300 -12 669 159 0 110 chr12 6931682 6931797 -137350692 + FLAM_A SINE Alu 1 98 -204 2121 78 17 34 chr12 6931797 6932092 -137350397 - AluSg SINE Alu -20 290 1 669 159 0 110 chr12 6932092 6932121 -137350368 + FLAM_A SINE Alu 98 129 -173 2172 118 10 0 chr12 6932974 6933262 -137349227 + AluSx SINE Alu 1 291 -21 21 36 0 0 chr12 6933275 6933303 -137349186 + AT_rich Low_complexity Low_complexity 1 28 0 296 388 55 0 chr12 6933460 6933715 -137348774 - L1ME3 LINE L1 -277 5885 5617 1361 222 54 13 chr12 6934081 6934396 -137348093 + MER58B DNA MER1_type 1 328 -13 2159 135 0 7 chr12 6934398 6934701 -137347788 + AluSx SINE Alu 1 301 -11 223 337 31 38 chr12 6934910 6935171 -137347318 + L2 LINE L2 2715 2973 -341 1032 154 178 65 chr12 6935282 6935313 -137347176 - AluJb SINE Alu -16 296 270 2281 99 0 0 chr12 6935313 6935607 -137346882 + AluSc SINE Alu 5 298 -11 1032 154 178 65 chr12 6935607 6935789 -137346700 - AluJb SINE Alu -42 270 59 817 83 9 0 chr12 6935838 6935947 -137346542 - AluSc SINE Alu -10 299 190 1091 151 0 0 chr12 6936174 6936333 -137346156 - AluSg/x SINE Alu -17 295 137 2044 141 13 10 chr12 6936369 6936675 -137345814 + AluSx SINE Alu 1 307 -5 1766 130 3 31 chr12 6938266 6938400 -137344089 + AluSx SINE Alu 2 138 -176 2141 83 66 21 chr12 6938400 6938535 -137343954 + AluSx SINE Alu 1 128 -184 2408 92 3 16 chr12 6938535 6938850 -137343639 + AluSx SINE Alu 1 311 -1 2141 83 66 21 chr12 6938850 6939003 -137343486 + AluSx SINE Alu 128 302 -10 2633 53 0 0 chr12 6939007 6939310 -137343179 + AluY SINE Alu 1 303 -8 1766 130 3 31 chr12 6939310 6939491 -137342998 + AluSx SINE Alu 141 314 0 2246 109 13 3 chr12 6939657 6939960 -137342529 + AluSp SINE Alu 1 306 -7 2064 139 7 0 chr12 6939960 6940261 -137342228 + AluSc SINE Alu 1 304 -5 1808 95 0 0 chr12 6941113 6941335 -137341154 - AluSq SINE Alu -91 222 1 238 210 0 0 chr12 6943203 6943265 -137339224 + L1ME LINE L1 5717 5778 -343 823 180 77 6 chr12 6943265 6943448 -137339041 - MER2 DNA MER2_type 0 345 150 217 254 51 0 chr12 6943463 6943522 -137338967 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 1638 169 59 0 chr12 6943643 6943916 -137338573 - AluJb SINE Alu -23 289 1 25 31 0 0 chr12 6943949 6943981 -137338508 + AT_rich Low_complexity Low_complexity 1 32 0 2301 74 7 0 chr12 6944530 6944814 -137337675 - AluY SINE Alu -25 286 1 1613 90 0 5 chr12 6944833 6945034 -137337455 + AluSg/x SINE Alu 96 295 -17 2168 122 0 7 chr12 6945048 6945342 -137337147 + AluSx SINE Alu 1 292 -20 2257 84 0 11 chr12 6945349 6945636 -137336853 + AluY SINE Alu 1 284 -27 198 91 0 0 chr12 6945636 6945669 -137336820 + (CATA)n Simple_repeat Simple_repeat 2 34 0 1342 183 119 0 chr12 6945675 6945927 -137336562 + AluJo SINE Alu 1 282 -30 2150 136 3 0 chr12 6945927 6946228 -137336261 - AluSx SINE Alu -8 304 3 2267 114 0 7 chr12 6947728 6948027 -137334462 + AluSx SINE Alu 1 297 -15 1063 169 0 33 chr12 6948028 6948198 -137334291 + AluJo/FRAM SINE Alu 134 299 -13 1584 120 14 0 chr12 6948198 6948415 -137334074 + AluSq SINE Alu 1 220 -93 1063 169 0 33 chr12 6948415 6948428 -137334061 + AluJo/FRAM SINE Alu 299 311 -1 2398 216 59 32 chr12 6948432 6948719 -137333770 + L1MC4a LINE L1 7074 7352 -456 2389 94 0 0 chr12 6948719 6949017 -137333472 + AluSc SINE Alu 1 298 -11 2398 216 59 32 chr12 6949017 6949149 -137333340 + L1MC4a LINE L1 7352 7479 -329 2246 108 10 7 chr12 6949149 6949445 -137333044 + AluSx SINE Alu 1 297 -15 2398 216 59 32 chr12 6949445 6949740 -137332749 + L1MC4a LINE L1 7479 7808 0 1622 209 0 17 chr12 6949771 6950073 -137332416 + AluJo SINE Alu 3 299 -13 2590 71 0 3 chr12 6950075 6950384 -137332105 + AluSc SINE Alu 1 308 -1 184 250 0 0 chr12 6950408 6950448 -137332041 + MIR SINE MIR 63 102 -106 2437 79 3 0 chr12 6953076 6953367 -137329122 - AluSp SINE Alu -21 292 1 2374 82 0 50 chr12 6954722 6955041 -137327448 + AluSq SINE Alu 1 303 -10 1135 155 0 0 chr12 6955043 6955211 -137327278 + AluSc SINE Alu 134 301 -8 1921 109 7 63 chr12 6955600 6955750 -137326739 + AluSx SINE Alu 1 126 -185 2432 82 0 0 chr12 6955750 6956043 -137326446 + AluSx SINE Alu 1 293 -19 1921 109 7 63 chr12 6956043 6956220 -137326269 + AluSx SINE Alu 126 311 0 2183 103 22 22 chr12 6956220 6956531 -137325958 + AluY SINE Alu 1 311 0 710 253 0 0 chr12 6956552 6956706 -137325783 + FRAM SINE Alu 1 154 -22 2265 104 3 10 chr12 6956713 6957022 -137325467 + AluSx SINE Alu 1 307 -5 2340 88 0 3 chr12 6957761 6958056 -137324433 + AluSc SINE Alu 1 294 -15 403 134 30 0 chr12 6958107 6958174 -137324315 - MER46A DNA MER2_type 0 236 168 264 148 37 0 chr12 6958144 6958198 -137324291 + MER46A DNA MER2_type 99 154 -82 * 1510 194 0 48 chr12 6958387 6958701 -137323788 + AluJo SINE Alu 6 304 -8 198 0 0 0 chr12 6961211 6961233 -137321256 + (TCC)n Simple_repeat Simple_repeat 3 24 0 2241 105 14 0 chr12 6963231 6963526 -137318963 + AluSx SINE Alu 4 302 -10 241 268 32 16 chr12 6965897 6966020 -137316469 + (CGGGG)n Simple_repeat Simple_repeat 4 128 0 473 0 18 0 chr12 6966904 6966961 -137315528 + (CA)n Simple_repeat Simple_repeat 2 59 0 2165 112 3 0 chr12 6968968 6969271 -137313218 + AluSg SINE Alu 1 304 -6 1365 148 103 8 chr12 6969405 6969648 -137312841 - AluJb SINE Alu 0 312 47 2477 56 3 0 chr12 6969660 6969965 -137312524 - AluSp SINE Alu -7 306 1 208 153 0 34 chr12 6972177 6972236 -137310253 + C-rich Low_complexity Low_complexity 2 58 0 267 275 0 54 chr12 6973371 6973520 -137308969 + CT-rich Low_complexity Low_complexity 2 142 0 485 272 31 43 chr12 6973900 6974062 -137308427 - MIR SINE MIR -75 187 28 2147 118 0 0 chr12 6974352 6974657 -137307832 + AluSx SINE Alu 1 305 -7 464 82 0 0 chr12 6974662 6974723 -137307766 + Alu SINE Alu 2 62 -248 1225 186 8 35 chr12 6974845 6975103 -137307386 - AluSx SINE Alu -61 251 1 2070 123 16 0 chr12 6975116 6975424 -137307065 - AluSq SINE Alu 0 313 1 2193 116 0 3 chr12 6976632 6976943 -137305546 - AluSg SINE Alu 0 310 1 234 252 118 34 chr12 6977078 6977197 -137305292 - L3b LINE CR1 -146 1437 1309 2222 92 0 10 chr12 6978080 6978385 -137304104 - AluSq SINE Alu -11 302 1 1333 104 0 120 chr12 6978644 6978687 -137303802 + AluJo SINE Alu 85 132 -180 2145 98 0 0 chr12 6978687 6978973 -137303516 - AluSc SINE Alu -20 289 4 1333 104 0 120 chr12 6978973 6979004 -137303485 + AluJo SINE Alu 132 165 -147 1683 137 10 64 chr12 6979004 6979317 -137303172 + AluSx SINE Alu 1 296 -16 1333 104 0 120 chr12 6979317 6979478 -137303011 + AluJo SINE Alu 165 292 -20 2273 110 0 0 chr12 6979478 6979787 -137302702 + AluSg1 SINE Alu 1 309 0 1333 104 0 120 chr12 6979787 6979799 -137302690 + AluJo SINE Alu 292 304 -8 199 222 93 0 chr12 6979974 6980028 -137302461 - MIR3 SINE MIR -19 189 131 261 0 0 0 chr12 6980628 6980657 -137301832 + (GGCTG)n Simple_repeat Simple_repeat 5 33 0 283 227 147 0 chr12 6981326 6981401 -137301088 + MER103 DNA DNA 8 93 -73 259 195 85 24 chr12 6981409 6981491 -137300998 + L1MC5 LINE L1 7820 7906 -55 2077 99 0 11 chr12 6981616 6981922 -137300567 + AluSg SINE Alu 1 303 0 1744 159 0 3 chr12 6982021 6982311 -137300178 + AluJb SINE Alu 22 310 -2 254 327 73 42 chr12 6983226 6983391 -137299098 - MIR3 SINE MIR -21 187 18 315 253 0 13 chr12 6984439 6984518 -137297971 - MIR SINE MIR -101 107 30 546 301 52 16 chr12 6985338 6985587 -137296902 + L2 LINE L2 2127 2384 -930 665 299 33 29 chr12 6985587 6985828 -137296661 - MIR SINE MIR 0 262 21 754 146 31 23 chr12 6986439 6986569 -137295920 + FLAM_C SINE Alu 2 132 -11 311 313 27 33 chr12 6986579 6986729 -137295760 + L2 LINE L2 2915 3063 -209 471 77 0 44 chr12 6986950 6987041 -137295448 - L1M4 LINE L1 -1093 5053 4967 271 290 270 0 chr12 6987122 6987322 -137295167 - L1M4 LINE L1 -1160 4986 4733 1885 134 0 20 chr12 6987640 6987938 -137294551 + AluJo SINE Alu 1 292 -20 487 277 22 0 chr12 6988463 6988600 -137293889 - MIR3 SINE MIR -33 175 36 294 333 0 0 chr12 6989021 6989117 -137293372 + CT-rich Low_complexity Low_complexity 3 98 0 2516 59 0 0 chr12 6990324 6990630 -137291859 - AluY SINE Alu -5 306 1 2055 110 0 39 chr12 6990633 6990942 -137291547 - AluSx SINE Alu -15 297 1 2280 77 3 3 chr12 6992257 6992554 -137289935 - AluSc SINE Alu -12 297 1 1071 88 0 0 chr12 6992554 6992690 -137289799 - AluSq/x SINE Alu -176 136 1 422 285 83 7 chr12 6992691 6992835 -137289654 - MIR SINE MIR -48 214 60 1344 150 0 26 chr12 6993055 6993288 -137289201 + AluJb SINE Alu 85 311 -1 1757 133 7 18 chr12 6993303 6993623 -137288866 + AluJb SINE Alu 1 317 0 716 142 0 0 chr12 6993627 6993733 -137288756 + AluSq/x SINE Alu 3 108 -204 2246 99 3 0 chr12 6993735 6994039 -137288450 + AluY SINE Alu 1 305 -6 1363 139 102 16 chr12 6994173 6994417 -137288072 - AluJb SINE Alu -1 311 47 2434 56 7 0 chr12 6994429 6994733 -137287756 - AluSp SINE Alu -7 306 1 208 153 0 34 chr12 6996944 6997003 -137285486 + C-rich Low_complexity Low_complexity 2 58 0 267 275 0 54 chr12 6998138 6998287 -137284202 + CT-rich Low_complexity Low_complexity 2 142 0 485 272 31 43 chr12 6998667 6998829 -137283660 - MIR SINE MIR -75 187 28 2147 118 0 0 chr12 6999119 6999424 -137283065 + AluSx SINE Alu 1 305 -7 2128 106 0 7 chr12 6999428 6999731 -137282758 + AluSc SINE Alu 1 301 -8 222 305 168 18 chr12 7000266 7000433 -137282056 + MIR SINE MIR 20 211 -51 2297 85 3 0 chr12 7000481 7000786 -137281703 + AluSq SINE Alu 1 306 -7 200 263 58 109 chr12 7001068 7001205 -137281284 + L2 LINE L2 2586 2715 -599 756 167 19 119 chr12 7001354 7001564 -137280925 - L2 LINE L2 -1 3312 3124 281 158 12 0 chr12 7001994 7002076 -137280413 + (CA)n Simple_repeat Simple_repeat 2 84 0 2029 112 17 3 chr12 7002246 7002542 -137279947 + AluSx SINE Alu 1 300 -12 1071 142 78 34 chr12 7002952 7003156 -137279333 + Charlie1 DNA MER1_type 5 217 -2544 550 147 101 0 chr12 7003156 7003285 -137279204 + Charlie1 DNA MER1_type 2620 2761 0 358 57 80 11 chr12 7003323 7003411 -137279078 + GA-rich Low_complexity Low_complexity 1 94 0 257 266 18 83 chr12 7005600 7005709 -137276780 + MIR SINE MIR 1 102 -160 1467 168 6 78 chr12 7005714 7005845 -137276644 + AluJb SINE Alu 1 140 -172 2248 102 0 0 chr12 7005845 7006140 -137276349 + AluSq SINE Alu 1 295 -18 2317 85 0 13 chr12 7006141 7006457 -137276032 + AluSq SINE Alu 1 312 -1 2032 101 29 16 chr12 7006466 7006773 -137275716 + AluSx SINE Alu 1 311 -1 1467 168 6 78 chr12 7006773 7006950 -137275539 + AluJb SINE Alu 148 298 -14 2052 119 7 0 chr12 7006957 7007250 -137275239 + AluSx SINE Alu 1 295 -17 1849 182 0 0 chr12 7007257 7007559 -137274930 + AluSx SINE Alu 7 308 -4 291 239 162 8 chr12 7007648 7007765 -137274724 - L2 LINE L2 -21 3292 3158 822 133 7 0 chr12 7007848 7007983 -137274506 + AluSg/x SINE Alu 171 306 -6 297 164 0 33 chr12 7008093 7008154 -137274335 + MIR SINE MIR 119 177 -85 241 108 0 0 chr12 7008271 7008332 -137274157 + Alu SINE Alu 251 311 0 1881 154 54 42 chr12 7008340 7008605 -137273884 - L1MB4 LINE L1 -87 6093 5820 2335 76 3 10 chr12 7008605 7008919 -137273570 - AluSp SINE Alu -1 312 1 1881 154 54 42 chr12 7008919 7009062 -137273427 - L1MB4 LINE L1 -360 5820 5680 2331 64 14 0 chr12 7009143 7009438 -137273051 + AluY SINE Alu 1 299 -12 2155 88 10 7 chr12 7009439 7009736 -137272753 + AluY SINE Alu 1 298 -13 1546 186 9 40 chr12 7009788 7009985 -137272504 - AluJo SINE Alu 0 312 127 2127 103 0 17 chr12 7009985 7010286 -137272203 + AluSx SINE Alu 1 296 -16 1546 186 9 40 chr12 7010286 7010410 -137272079 - AluJo SINE Alu -185 127 1 447 325 55 65 chr12 7010597 7010982 -137271507 + L2 LINE L2 2837 3217 -55 658 170 0 0 chr12 7011199 7011305 -137271184 + AluSg/x SINE Alu 191 296 -14 2149 88 10 3 chr12 7011307 7011603 -137270886 + AluSq SINE Alu 1 298 -15 2367 81 0 0 chr12 7012007 7012317 -137270172 - AluY SINE Alu -1 310 1 1888 113 0 31 chr12 7012444 7012624 -137269865 - AluSx SINE Alu -3 309 140 2352 79 3 3 chr12 7012624 7012929 -137269560 - AluSp SINE Alu -8 305 1 1888 113 0 31 chr12 7012929 7013040 -137269449 - AluSx SINE Alu -172 140 27 264 68 25 29 chr12 7013160 7013212 -137269277 - AluSx SINE Alu -262 38 1 737 252 40 17 chr12 7013214 7013401 -137269088 + L1MEc LINE L1 2315 2470 -3745 1971 107 47 10 chr12 7013401 7013699 -137268790 + AluSx SINE Alu 1 309 -3 737 252 40 17 chr12 7013699 7013791 -137268698 + L1MEc LINE L1 2470 2558 -3657 1537 115 0 5 chr12 7013791 7014008 -137268481 + AluSx SINE Alu 1 216 -96 4844 61 3 12 chr12 7014008 7014650 -137267839 + LTR13 LTR ERVK 372 1007 0 1257 199 127 8 chr12 7014663 7014930 -137267559 - AluJo SINE Alu -2 300 2 227 248 120 86 chr12 7015000 7015117 -137267372 + MIR3 SINE MIR 47 167 -41 195 211 0 58 chr12 7015202 7015254 -137267235 + L3 LINE CR1 1516 1564 -13 2370 121 30 30 chr12 7015446 7015810 -137266679 + THE1B LTR MaLR 1 364 0 2229 73 0 30 chr12 7015855 7016155 -137266334 - AluY SINE Alu -17 294 4 2169 99 10 0 chr12 7016570 7016864 -137265625 + AluSx SINE Alu 1 297 -15 260 296 68 38 chr12 7017898 7018030 -137264459 - MIR3 SINE MIR -64 144 9 330 204 93 37 chr12 7018614 7018722 -137263767 - MIR3 SINE MIR -82 126 13 2090 108 30 0 chr12 7018812 7019107 -137263382 + AluSx SINE Alu 1 304 -8 2136 96 0 45 chr12 7021549 7021862 -137260627 + AluSg SINE Alu 1 299 -11 1523 105 113 4 chr12 7023334 7023573 -137258916 - AluSx SINE Alu -9 303 39 2157 118 7 0 chr12 7026891 7027197 -137255292 + AluSg SINE Alu 1 308 -2 1053 135 35 6 chr12 7027197 7027367 -137255122 + AluSg/x SINE Alu 134 308 -4 809 129 0 24 chr12 7027530 7027654 -137254835 - AluJb SINE Alu -191 121 1 2187 97 3 34 chr12 7027731 7028052 -137254437 + AluSx SINE Alu 1 311 -1 1717 145 99 0 chr12 7028057 7028339 -137254150 + AluJo SINE Alu 1 310 -2 209 200 11 53 chr12 7028491 7028586 -137253903 + CT-rich Low_complexity Low_complexity 1 91 0 2456 50 13 3 chr12 7028586 7028886 -137253603 - AluY SINE Alu -8 303 1 304 354 130 5 chr12 7028887 7028981 -137253508 - HAL1 LINE L1 -1218 1289 1208 2108 112 16 16 chr12 7028981 7029293 -137253196 - AluSp SINE Alu -1 312 1 304 354 130 5 chr12 7029293 7029390 -137253099 - HAL1 LINE L1 -1299 1208 1074 246 95 0 0 chr12 7029888 7029930 -137252559 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 461 227 63 66 chr12 7029932 7030184 -137252305 - L2 LINE L2 -14 3258 2938 1015 95 0 7 chr12 7030184 7030321 -137252168 + AluJb SINE Alu 1 136 -176 2244 81 3 32 chr12 7030321 7030631 -137251858 + AluY SINE Alu 1 301 -10 1312 217 195 49 chr12 7030635 7031087 -137251402 - L2 LINE L2 -366 2948 2431 1514 127 26 138 chr12 7031388 7031735 -137250754 + AluYb8 SINE Alu 1 308 0 219 284 45 11 chr12 7031754 7031842 -137250647 - L2 LINE L2 -454 2860 2770 185 324 14 14 chr12 7031886 7031957 -137250532 - L2 LINE L2 -1 3271 3201 197 338 44 66 chr12 7032158 7032386 -137250103 - L2 LINE L2 -940 2374 2152 1112 109 65 45 chr12 7032752 7032810 -137249679 - MER3 DNA MER1_type -4 205 150 2200 79 0 4 chr12 7032810 7033111 -137249378 + AluSc SINE Alu 1 300 0 1112 109 65 45 chr12 7033111 7033123 -137249366 - MER3 DNA MER1_type -59 150 140 2051 101 3 41 chr12 7033123 7033459 -137249030 + AluSx SINE Alu 1 312 0 1112 109 65 45 chr12 7033459 7033587 -137248902 - MER3 DNA MER1_type -69 140 1 2100 128 0 0 chr12 7033734 7034032 -137248457 + AluSg SINE Alu 1 298 -12 1585 155 61 4 chr12 7034101 7034378 -137248111 + AluJb SINE Alu 8 300 -12 2093 133 3 0 chr12 7034938 7035240 -137247249 + AluSx SINE Alu 1 303 -9 234 298 6 37 chr12 7036726 7036887 -137245602 + GA-rich Low_complexity Low_complexity 5 160 0 21 36 0 0 chr12 7037137 7037165 -137245324 + AT_rich Low_complexity Low_complexity 1 28 0 186 167 0 64 chr12 7038326 7038404 -137244085 + C-rich Low_complexity Low_complexity 1 73 0 258 105 0 0 chr12 7038691 7038729 -137243760 + (CCG)n Simple_repeat Simple_repeat 3 40 0 26 64 0 0 chr12 7038778 7038825 -137243664 + GC_rich Low_complexity Low_complexity 1 47 0 30 97 0 0 chr12 7038876 7038969 -137243520 + GC_rich Low_complexity Low_complexity 1 93 0 23 0 0 0 chr12 7039718 7039741 -137242748 + GC_rich Low_complexity Low_complexity 1 23 0 213 324 0 0 chr12 7041733 7041801 -137240688 + GA-rich Low_complexity Low_complexity 1 68 0 335 287 10 0 chr12 7042044 7042145 -137240344 + GA-rich Low_complexity Low_complexity 3 104 0 386 224 197 14 chr12 7043961 7044108 -137238381 + MIR SINE MIR 86 259 -3 180 273 109 0 chr12 7048603 7048658 -137233831 - MIR SINE MIR -162 100 40 804 161 0 22 chr12 7049085 7049222 -137233267 + AluJb SINE Alu 1 134 -178 370 250 76 18 chr12 7049758 7049896 -137232593 + MIR SINE MIR 45 200 -8 237 313 0 0 chr12 7050296 7050363 -137232126 + CT-rich Low_complexity Low_complexity 2 68 0 201 132 0 0 chr12 7050740 7050778 -137231711 + (TC)n Simple_repeat Simple_repeat 1 38 0 381 131 0 0 chr12 7051006 7051067 -137231422 + (CA)n Simple_repeat Simple_repeat 1 61 0 406 218 156 5 chr12 7051555 7051695 -137230794 + MIR SINE MIR 34 191 -63 1899 169 0 7 chr12 7052430 7052732 -137229757 + AluJb SINE Alu 1 300 -12 242 200 0 62 chr12 7053374 7053439 -137229050 - MLT1F LTR MaLR 0 542 482 714 202 0 0 chr12 7053439 7053558 -137228931 + AluJo SINE Alu 1 119 -193 1346 96 0 0 chr12 7053558 7053735 -137228754 - AluSg/x SINE Alu -15 295 119 23 0 0 0 chr12 7053736 7053759 -137228730 + AT_rich Low_complexity Low_complexity 1 23 0 2140 82 0 14 chr12 7053759 7054052 -137228437 - AluY SINE Alu -22 289 1 888 235 0 0 chr12 7054073 7054260 -137228229 + AluJo SINE Alu 124 310 -2 1256 288 70 21 chr12 7054277 7054704 -137227785 - MLT1F LTR MaLR -92 450 3 215 261 120 43 chr12 7055722 7055814 -137226675 + MIR SINE MIR 118 216 -46 1906 161 0 27 chr12 7055958 7056287 -137226202 - 7SLRNA srpRNA srpRNA 0 320 1 1006 99 0 0 chr12 7056326 7056457 -137226032 - AluY SINE Alu -180 131 1 473 273 25 61 chr12 7056512 7056596 -137225893 + MIR SINE MIR 33 118 -144 1675 186 3 7 chr12 7056596 7056892 -137225597 + AluJo SINE Alu 1 295 -17 473 273 25 61 chr12 7056892 7057005 -137225484 + MIR SINE MIR 118 223 -39 2337 93 0 0 chr12 7057566 7057878 -137224611 + AluSx SINE Alu 1 312 0 727 174 82 51 chr12 7057893 7058041 -137224448 + L1MB3 LINE L1 5978 6135 -48 2330 96 0 0 chr12 7058041 7058342 -137224147 + AluSx SINE Alu 1 301 -11 727 174 82 51 chr12 7058342 7058388 -137224101 + L1MB3 LINE L1 6135 6178 -5 21 36 0 0 chr12 7058388 7058416 -137224073 + AT_rich Low_complexity Low_complexity 1 28 0 294 274 53 11 chr12 7058423 7058518 -137223971 - L2 LINE L2 -8 3264 3166 618 259 30 35 chr12 7058632 7058864 -137223625 + MLT1J LTR MaLR 279 509 -2 323 286 179 12 chr12 7058924 7059092 -137223397 + L2 LINE L2 3117 3312 -1 726 281 58 8 chr12 7059178 7059420 -137223069 - MLT1J LTR MaLR -242 269 16 1287 154 27 64 chr12 7059464 7059762 -137222727 + Charlie1a DNA MER1_type 1 287 -1168 690 251 25 33 chr12 7059762 7060005 -137222484 + AluSq SINE Alu 1 241 -72 2168 109 0 6 chr12 7060459 7060771 -137221718 + AluY SINE Alu 1 310 -1 355 113 0 0 chr12 7060780 7060833 -137221656 + AluJb SINE Alu 1 53 -249 1212 88 26 5 chr12 7060857 7061050 -137221439 + LTR3b LTR ERVK 304 500 0 1415 178 0 20 chr12 7061051 7061304 -137221185 + AluJb SINE Alu 50 297 -15 697 153 0 0 chr12 7061354 7061465 -137221024 - AluSx SINE Alu -2 310 200 891 76 30 15 chr12 7061465 7061597 -137220892 - AluSx SINE Alu -175 138 5 2314 82 20 0 chr12 7061618 7061923 -137220566 - AluY SINE Alu 0 311 1 1083 111 0 12 chr12 7061923 7062075 -137220414 - AluSq SINE Alu -15 298 147 6391 154 196 20 chr12 7062075 7063516 -137218973 + pTR5 LTR ERV1 743 2437 -1 577 152 0 50 chr12 7063516 7063537 -137218952 - AluSg SINE Alu -158 152 131 1914 138 14 3 chr12 7063537 7063834 -137218655 - AluSq SINE Alu -13 300 1 577 152 0 50 chr12 7063834 7063911 -137218578 - AluSg SINE Alu -179 131 59 991 128 27 0 chr12 7063923 7064071 -137218418 - AluSx SINE Alu -159 153 2 692 145 8 0 chr12 7064098 7064215 -137218274 - FLAM_A SINE Alu 0 142 25 351 273 28 21 chr12 7064218 7064361 -137218128 - L1 LINE L1 -2452 3694 3551 1968 119 24 0 chr12 7064407 7064700 -137217789 + AluSq SINE Alu 1 300 -13 2320 99 0 0 chr12 7064705 7065008 -137217481 + AluSx SINE Alu 1 303 -9 2224 93 0 7 chr12 7065013 7065315 -137217174 + AluY SINE Alu 1 300 -11 1164 119 11 0 chr12 7065316 7065493 -137216996 + AluSg/x SINE Alu 132 310 0 709 174 8 30 chr12 7065501 7065633 -137216856 - FLAM_C SINE Alu -1 132 4 1414 261 133 23 chr12 7065633 7065727 -137216762 + L2 LINE L2 2449 2531 -782 2042 133 3 0 chr12 7065727 7066021 -137216468 + AluSx SINE Alu 1 295 -17 222 37 0 0 chr12 7066022 7066049 -137216440 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1414 261 133 23 chr12 7066049 7066633 -137215856 + L2 LINE L2 2530 3227 -86 187 250 143 0 chr12 7066771 7066827 -137215662 + L2 LINE L2 3209 3272 0 343 275 22 33 chr12 7066902 7067084 -137215405 + CT-rich Low_complexity Low_complexity 1 180 0 339 341 117 11 chr12 7067085 7067264 -137215225 - MIR3 SINE MIR -5 203 6 2106 138 0 40 chr12 7067292 7067617 -137214872 - AluSx SINE Alu 0 312 1 2052 133 0 37 chr12 7067624 7067948 -137214541 - AluSx SINE Alu 0 312 1 364 333 82 7 chr12 7067972 7068119 -137214370 + MIR SINE MIR 34 191 -71 2228 109 7 0 chr12 7068133 7068435 -137214054 + AluSg SINE Alu 1 304 -6 653 111 0 0 chr12 7068444 7068543 -137213946 + AluJ/FRAM SINE Alu 214 312 0 2651 46 3 0 chr12 7068653 7068959 -137213530 + AluY SINE Alu 1 307 -4 213 257 40 14 chr12 7069061 7069135 -137213354 + CT-rich Low_complexity Low_complexity 3 78 0 266 224 188 0 chr12 7069274 7069359 -137213130 + MIR SINE MIR 96 196 -66 213 294 0 0 chr12 7069529 7069580 -137212909 + MIR SINE MIR 95 145 -63 235 197 158 0 chr12 7069704 7069780 -137212709 + MIR SINE MIR 175 262 0 236 246 121 95 chr12 7071258 7071378 -137211111 + MIR3 SINE MIR 14 146 -116 2474 79 0 3 chr12 7071378 7071683 -137210806 - AluY SINE Alu -7 304 1 236 246 121 95 chr12 7071683 7071771 -137210718 + MIR3 SINE MIR 146 230 -32 1173 183 134 15 chr12 7072135 7072259 -137210230 + AluSx SINE Alu 1 109 -193 2027 97 93 0 chr12 7072259 7072538 -137209951 + AluY SINE Alu 1 305 -6 2192 96 0 26 chr12 7072541 7072869 -137209620 + AluSg SINE Alu 1 310 0 1173 183 134 15 chr12 7072869 7073008 -137209481 + AluSx SINE Alu 110 300 -2 221 320 40 30 chr12 7073046 7073146 -137209343 - L2 LINE L2 -61 3252 3152 2460 93 0 0 chr12 7073284 7073586 -137208903 + AluSx SINE Alu 1 302 -10 190 362 35 17 chr12 7073899 7074015 -137208474 - L2 LINE L2 -270 3002 2885 1539 190 4 7 chr12 7076272 7076546 -137205943 - AluJo SINE Alu -39 273 1 222 37 0 0 chr12 7077190 7077217 -137205272 + (TC)n Simple_repeat Simple_repeat 2 28 0 1961 119 42 7 chr12 7078288 7078574 -137203915 + AluSx SINE Alu 1 296 -16 2375 75 3 3 chr12 7078574 7078867 -137203622 + AluY SINE Alu 1 293 -18 2369 95 0 0 chr12 7079327 7079623 -137202866 + AluSc SINE Alu 1 296 -13 23 33 0 0 chr12 7079768 7079798 -137202691 + AT_rich Low_complexity Low_complexity 1 30 0 2151 110 10 0 chr12 7079809 7080100 -137202389 + AluSc SINE Alu 5 298 -11 2260 129 0 0 chr12 7081371 7081674 -137200815 - AluSx SINE Alu -9 303 1 2225 113 0 26 chr12 7081681 7081992 -137200497 - AluSx SINE Alu -9 303 1 1537 149 108 11 chr12 7083701 7083969 -137198520 - AluJb SINE Alu -18 294 1 292 196 9 103 chr12 7083976 7084083 -137198406 - FLAM_A SINE Alu -8 125 29 1774 147 13 42 chr12 7084158 7084470 -137198019 - AluJb SINE Alu -9 303 1 2194 119 0 0 chr12 7084563 7084857 -137197632 - AluSx SINE Alu -18 294 1 2299 123 0 0 chr12 7084866 7085176 -137197313 - AluSx SINE Alu -2 310 1 214 211 0 0 chr12 7085789 7085827 -137196662 + T-rich Low_complexity Low_complexity 1 38 0 2131 121 16 22 chr12 7085989 7086303 -137196186 - AluSx SINE Alu 0 312 1 1983 149 3 3 chr12 7086704 7086999 -137195490 + AluSx SINE Alu 1 295 -17 2341 79 0 0 chr12 7087000 7087311 -137195178 + AluY SINE Alu 1 311 0 2355 102 3 0 chr12 7087483 7087778 -137194711 + AluSg SINE Alu 2 297 -13 475 109 0 0 chr12 7087924 7087988 -137194501 - AluS SINE Alu -238 75 12 460 250 79 95 chr12 7088025 7088143 -137194346 + L2 LINE L2 2584 2702 -570 2053 138 3 3 chr12 7088143 7088455 -137194034 + AluSx SINE Alu 1 312 0 460 250 79 95 chr12 7088455 7088790 -137193699 + L2 LINE L2 2702 3039 -233 1108 200 33 9 chr12 7088883 7089098 -137193391 + AluJo SINE Alu 1 220 -92 1088 122 0 0 chr12 7089120 7089267 -137193222 + AluSg/x SINE Alu 157 303 -9 2493 70 0 3 chr12 7089270 7089572 -137192917 + AluY SINE Alu 1 301 -10 563 237 14 14 chr12 7089577 7089716 -137192773 + FLAM_A SINE Alu 4 142 0 298 304 0 11 chr12 7089758 7089850 -137192639 + L2 LINE L2 3182 3272 0 849 154 0 0 chr12 7089920 7090043 -137192446 + FLAM_C SINE Alu 2 124 -9 25 0 0 0 chr12 7090043 7090068 -137192421 + AT_rich Low_complexity Low_complexity 1 25 0 2236 129 3 0 chr12 7090068 7090405 -137192084 + AluSx SINE Alu 1 338 0 189 282 237 15 chr12 7090416 7090547 -137191942 + L2 LINE L2 1833 1992 -1322 1866 119 90 4 chr12 7090557 7090834 -137191655 - AluSq SINE Alu -12 301 1 2399 99 0 0 chr12 7090834 7091137 -137191352 - AluSg SINE Alu -7 303 1 2122 123 0 43 chr12 7091144 7091470 -137191019 - AluSx SINE Alu 0 312 1 744 282 68 82 chr12 7091869 7092224 -137190265 + L2 LINE L2 2921 3270 -2 2307 109 3 3 chr12 7093587 7093889 -137188600 - AluSp SINE Alu -11 302 1 266 156 234 0 chr12 7094564 7094641 -137187848 + MIR SINE MIR 99 193 -69 677 238 43 5 chr12 7094990 7095175 -137187314 - AluSq SINE Alu 0 313 122 1305 227 18 7 chr12 7095183 7095469 -137187020 - AluSq SINE Alu -24 289 1 1314 214 30 47 chr12 7095472 7095632 -137186857 - AluJo SINE Alu -18 294 140 2080 119 7 4 chr12 7095632 7095910 -137186579 - AluSq SINE Alu -34 279 1 1314 214 30 47 chr12 7095910 7096048 -137186441 - AluJo SINE Alu -172 140 1 2332 93 16 19 chr12 7096717 7096891 -137185598 - AluSx SINE Alu 0 312 138 2223 124 0 3 chr12 7096891 7097198 -137185291 - AluSg SINE Alu -4 306 1 2332 93 16 19 chr12 7097198 7097336 -137185153 - AluSx SINE Alu -174 138 1 227 189 38 19 chr12 7097363 7097416 -137185073 - MIR3 SINE MIR -31 177 124 195 100 0 0 chr12 7098107 7098137 -137184352 + (A)n Simple_repeat Simple_repeat 1 30 0 195 69 0 0 chr12 7098279 7098308 -137184181 + (TA)n Simple_repeat Simple_repeat 2 30 0 393 22 0 0 chr12 7099371 7099417 -137183072 + (CTG)n Simple_repeat Simple_repeat 1 46 0 225 279 0 0 chr12 7099429 7099497 -137182992 + (CTGGGG)n Simple_repeat Simple_repeat 2 69 0 215 146 0 24 chr12 7099496 7099537 -137182952 + (CTG)n Simple_repeat Simple_repeat 1 40 0 * 2293 118 0 16 chr12 7099890 7100205 -137182284 + AluSx SINE Alu 1 310 -2 399 254 25 51 chr12 7100890 7100968 -137181521 + Charlie1b DNA MER1_type 1 77 -446 2184 106 3 16 chr12 7100968 7101271 -137181218 - AluSx SINE Alu -13 299 1 399 254 25 51 chr12 7101271 7101310 -137181179 + Charlie1b DNA MER1_type 77 115 -408 503 167 71 0 chr12 7101310 7101394 -137181095 + AluSg/x SINE Alu 196 285 -27 237 159 0 0 chr12 7101394 7101438 -137181051 + (CA)n Simple_repeat Simple_repeat 1 44 0 1158 171 115 67 chr12 7101519 7101616 -137180873 + Charlie1b DNA MER1_type 149 240 -2521 1726 178 7 3 chr12 7101616 7101908 -137180581 + AluJo SINE Alu 2 294 -18 1158 171 115 67 chr12 7101908 7102166 -137180323 + Charlie1b DNA MER1_type 240 521 -2 183 143 0 0 chr12 7104108 7104143 -137178346 + L2 LINE L2 501 535 -2779 313 346 0 0 chr12 7105041 7105122 -137177367 + L2 LINE L2 3191 3271 -1 196 167 76 61 chr12 7105443 7105509 -137176980 - MER5A DNA MER1_type -23 166 100 233 262 252 37 chr12 7106130 7106237 -137176252 + MIR SINE MIR 21 150 -58 23 0 0 0 chr12 7106555 7106578 -137175911 + AT_rich Low_complexity Low_complexity 1 23 0 393 300 132 11 chr12 7106699 7106889 -137175600 - MIR SINE MIR -1 261 49 266 254 36 0 chr12 7106892 7106947 -137175542 + L3 LINE CR1 1432 1488 -89 2293 81 7 10 chr12 7107488 7107783 -137174706 + AluSx SINE Alu 2 295 -17 604 238 37 6 chr12 7108518 7108682 -137173807 - MIR SINE MIR -45 217 49 449 235 35 35 chr12 7110198 7110313 -137172176 + L2 LINE L2 3193 3307 -6 1577 178 63 14 chr12 7111447 7111734 -137170755 - AluJb SINE Alu -11 301 1 2227 114 7 0 chr12 7111836 7112133 -137170356 + AluSq SINE Alu 1 299 -14 2268 88 27 7 chr12 7112404 7112699 -137169790 + AluSq SINE Alu 1 301 -12 1276 201 10 102 chr12 7113479 7113783 -137168706 + AluJo SINE Alu 1 276 -36 513 0 0 0 chr12 7113789 7113846 -137168643 + (CAAAA)n Simple_repeat Simple_repeat 1 57 0 1569 183 67 0 chr12 7113854 7114139 -137168350 + AluJb SINE Alu 9 312 0 2156 105 7 0 chr12 7114482 7114793 -137167696 + AluSx SINE Alu 5 317 0 1865 156 57 0 chr12 7114865 7115148 -137167341 + AluSx SINE Alu 1 299 -13 2172 127 0 0 chr12 7115199 7115490 -137166999 + AluSg SINE Alu 1 291 -19 682 203 198 6 chr12 7115514 7115696 -137166793 - MIR SINE MIR -1 261 45 249 121 0 0 chr12 7116287 7116320 -137166169 + MER91 DNA MER1_type 73 105 -35 1889 146 0 0 chr12 7116540 7116820 -137165669 + AluJo SINE Alu 33 312 0 2197 108 6 19 chr12 7116967 7117281 -137165208 + AluSx SINE Alu 2 311 -1 2265 122 0 0 chr12 7117736 7118030 -137164459 - AluSx SINE Alu -18 294 1 341 267 219 0 chr12 7121563 7121750 -137160739 + L2 LINE L2 3085 3312 -1 2280 93 3 3 chr12 7122096 7122396 -137160093 - AluSq SINE Alu -12 301 2 200 228 43 57 chr12 7122400 7122510 -137159979 - MIR SINE MIR -63 145 65 1133 93 0 0 chr12 7122885 7123025 -137159464 + AluSp/q SINE Alu 164 303 -10 22 0 0 0 chr12 7123684 7123706 -137158783 + AT_rich Low_complexity Low_complexity 1 22 0 371 270 20 53 chr12 7125388 7125540 -137156949 + GA-rich Low_complexity Low_complexity 5 151 0 185 258 76 0 chr12 7128427 7128493 -137153996 + L2 LINE L2 2993 3063 -209 264 193 241 0 chr12 7128585 7128668 -137153821 + L2 LINE L2 3133 3235 -37 2347 109 0 0 chr12 7130442 7130744 -137151745 + AluSq SINE Alu 1 302 -11 257 312 5 58 chr12 7131014 7131203 -137151286 + GA-rich Low_complexity Low_complexity 2 180 0 265 229 0 43 chr12 7131330 7131400 -137151089 + GA-rich Low_complexity Low_complexity 4 70 0 227 206 8 71 chr12 7132133 7132259 -137150230 + (CGGGG)n Simple_repeat Simple_repeat 3 120 0 324 64 0 0 chr12 7132267 7132314 -137150175 + (CTCGG)n Simple_repeat Simple_repeat 5 51 0 852 125 0 29 chr12 7132588 7132724 -137149765 - FLAM_C SINE Alu -11 132 1 497 301 75 45 chr12 7132919 7133276 -137149213 + L2 LINE L2 2771 3134 -179 * 2054 251 113 22 chr12 7133260 7133980 -137148509 + L2 LINE L2 2005 2789 -525 938 137 0 0 chr12 7134086 7134217 -137148272 - AluSg/x SINE Alu -16 296 166 1116 113 0 7 chr12 7134276 7134427 -137148062 - AluSq/x SINE Alu -162 150 1 2358 108 0 0 chr12 7134573 7134880 -137147609 - AluSq SINE Alu -6 307 1 283 286 41 20 chr12 7134957 7135055 -137147434 + L2 LINE L2 3168 3267 -5 1240 119 8 128 chr12 7135648 7135891 -137146598 - AluJb SINE Alu -16 296 83 351 250 22 0 chr12 7135923 7136015 -137146474 - L2 LINE L2 -41 3231 3138 917 141 0 0 chr12 7136154 7136282 -137146207 - FLAM_C SINE Alu -13 130 3 767 237 212 49 chr12 7136304 7136546 -137145943 + L2 LINE L2 1329 1530 -1784 2672 24 7 0 chr12 7136546 7136842 -137145647 - AluY SINE Alu -13 298 1 767 237 212 49 chr12 7136842 7137047 -137145442 + L2 LINE L2 1530 1849 -1465 381 75 0 0 chr12 7137060 7137113 -137145376 - AluY SINE Alu -3 297 245 1526 66 0 6 chr12 7137113 7137295 -137145194 - AluY SINE Alu -130 181 1 1653 146 3 65 chr12 7137316 7137579 -137144910 - AluJo SINE Alu -11 301 60 2460 80 7 0 chr12 7137579 7137880 -137144609 - AluSc SINE Alu -6 303 1 1653 146 3 65 chr12 7137880 7137937 -137144552 - AluJo SINE Alu -252 60 1 2374 109 3 0 chr12 7137944 7138255 -137144234 - AluSx SINE Alu 0 312 1 2125 119 10 0 chr12 7138257 7138551 -137143938 - AluSq SINE Alu -16 297 1 2171 103 13 13 chr12 7138727 7139028 -137143461 + AluSg SINE Alu 1 301 -9 2204 113 10 7 chr12 7139046 7139385 -137143104 + AluY SINE Alu 1 311 0 2109 120 9 22 chr12 7139386 7139702 -137142787 + AluSx SINE Alu 1 312 0 2603 164 64 35 chr12 7139744 7140336 -137142153 + pTR5 LTR ERV1 738 1346 -1092 3460 166 109 28 chr12 7140350 7141110 -137141379 + LTR12 LTR ERV1 5 826 0 378 147 73 0 chr12 7141110 7141178 -137141311 + U6 snRNA snRNA 34 106 -1 1339 208 28 60 chr12 7141199 7141336 -137141153 + AluJo SINE Alu 1 141 -171 2090 119 7 4 chr12 7141336 7141614 -137140875 + AluSq SINE Alu 1 279 -34 1339 208 28 60 chr12 7141614 7141777 -137140712 + AluJo SINE Alu 141 293 -19 2356 109 7 0 chr12 7141777 7142081 -137140408 + AluSg SINE Alu 1 306 -4 1339 208 28 60 chr12 7142081 7142096 -137140393 + AluJo SINE Alu 293 307 -5 2235 101 0 0 chr12 7142101 7142410 -137140079 + AluSg SINE Alu 5 313 0 998 149 60 35 chr12 7142413 7142614 -137139875 + AluJo SINE Alu 87 292 -20 1621 177 13 23 chr12 7142616 7142915 -137139574 + AluJo SINE Alu 1 296 -16 1936 166 3 0 chr12 7142918 7143214 -137139275 + AluJb SINE Alu 1 297 -15 273 287 12 79 chr12 7143216 7143380 -137139109 - L1ME3A LINE L1 -258 5912 5760 1075 207 38 31 chr12 7143613 7143874 -137138615 - L2 LINE L2 -621 2693 2431 562 244 90 65 chr12 7144023 7144076 -137138413 - L1ME3A LINE L1 -562 5600 5550 2228 109 0 0 chr12 7144076 7144387 -137138102 - AluSx SINE Alu 0 311 1 562 244 90 65 chr12 7144387 7144635 -137137854 - L1ME3A LINE L1 -612 5550 5310 2458 93 3 0 chr12 7144635 7144946 -137137543 - AluSx SINE Alu 0 312 1 2177 117 3 13 chr12 7144955 7145253 -137137236 - AluSx SINE Alu -17 295 1 562 244 90 65 chr12 7145253 7145447 -137137042 - L1ME3A LINE L1 -859 5303 5101 28 0 0 0 chr12 7145451 7145479 -137137010 + AT_rich Low_complexity Low_complexity 1 28 0 2317 94 0 10 chr12 7145479 7145778 -137136711 - AluSx SINE Alu -16 296 1 1131 113 0 0 chr12 7145779 7145930 -137136559 - AluSq SINE Alu -16 297 147 390 261 0 0 chr12 7145930 7146022 -137136467 + pTR5 LTR ERV1 743 834 -1604 1191 126 12 0 chr12 7146439 7146606 -137135883 - AluJb SINE Alu -16 296 128 236 164 0 55 chr12 7146634 7146689 -137135800 - FLAM_A SINE Alu 0 133 82 351 250 22 0 chr12 7146721 7146813 -137135676 - L2 LINE L2 -41 3231 3138 882 139 0 8 chr12 7146952 7147081 -137135408 - AluJ SINE Alu -182 130 3 394 227 42 50 chr12 7147106 7147225 -137135264 + L2 LINE L2 1332 1449 -1865 275 200 0 38 chr12 7149107 7149187 -137133302 + CT-rich Low_complexity Low_complexity 4 80 0 215 179 0 0 chr12 7151252 7151291 -137131198 + A-rich Low_complexity Low_complexity 4 42 0 232 288 45 0 chr12 7151906 7151972 -137130517 + MIR SINE MIR 117 185 -77 22 0 0 0 chr12 7153439 7153461 -137129028 + GC_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 7153580 7153611 -137128878 + GC_rich Low_complexity Low_complexity 1 31 0 4163 240 22 13 chr12 7154965 7156196 -137126293 + L1MEc LINE L1 2161 3365 -2850 1630 207 61 2 chr12 7156361 7156757 -137125732 - L1 LINE L1 -885 6680 6262 * 3590 62 10 4 chr12 7156755 7157256 -137125233 - L1MA1 LINE L1 -191 6111 5608 1255 199 17 20 chr12 7157261 7157562 -137124927 - L1 LINE L1 -1302 6263 5964 1243 115 5 29 chr12 7157679 7157888 -137124601 - L1PA12 LINE L1 -77 6091 5888 2822 239 28 20 chr12 7157890 7159155 -137123334 - L1 LINE L1 -4177 3389 2097 222 287 149 0 chr12 7159693 7159787 -137122702 + MER5A DNA MER1_type 9 116 -73 1005 204 9 42 chr12 7159787 7160003 -137122486 + AluJo SINE Alu 85 293 -19 321 234 0 0 chr12 7162588 7162682 -137119807 - L1MA9 LINE L1 0 6312 6219 800 246 21 38 chr12 7165236 7165472 -137117017 + MIR SINE MIR 19 250 -12 492 333 65 13 chr12 7165720 7165951 -137116538 + MIR SINE MIR 19 261 -1 269 241 103 0 chr12 7166690 7166777 -137115712 - MER5A DNA MER1_type -85 104 9 2447 92 0 0 chr12 7167993 7168299 -137114190 - AluY SINE Alu -5 306 1 2427 229 87 42 chr12 7168299 7169129 -137113360 + L1M4 LINE L1 3483 4349 -1797 1092 143 74 18 chr12 7169623 7169840 -137112649 + L1MB8 LINE L1 5935 6163 -15 464 167 0 105 chr12 7170090 7170204 -137112285 - AluY SINE Alu -5 306 205 1399 164 70 64 chr12 7171085 7171525 -137110964 - L1MB4 LINE L1 -2 6178 5736 298 230 30 30 chr12 7171861 7171961 -137110528 + MLT1L LTR MaLR 171 270 -345 282 243 56 19 chr12 7172182 7172289 -137110200 - L1MC4 LINE L1 -16 8026 7916 571 169 16 24 chr12 7176163 7176287 -137106202 - MER5A DNA MER1_type -66 123 1 868 109 122 6 chr12 7177295 7177451 -137105038 - MSTA LTR MaLR 0 428 255 391 228 28 107 chr12 7178228 7178443 -137104046 - MLT1J LTR MaLR -202 309 112 232 303 129 34 chr12 7178758 7179115 -137103374 - L1ME LINE L1 -239 6276 5886 338 268 18 18 chr12 7180137 7180249 -137102240 - L1ME LINE L1 -2962 3578 3467 248 268 14 14 chr12 7180250 7180321 -137102168 + CT-rich Low_complexity Low_complexity 3 73 0 228 152 0 0 chr12 7180581 7180627 -137101862 + Alu SINE Alu 258 303 0 2342 86 26 3 chr12 7180677 7180980 -137101509 - AluY SINE Alu 0 311 2 407 150 36 66 chr12 7180993 7181132 -137101357 - L1ME LINE L1 -4037 2503 2361 2496 68 0 0 chr12 7181132 7181439 -137101050 - AluY SINE Alu -4 307 1 2203 77 0 68 chr12 7181439 7181627 -137100862 - AluSc SINE Alu -8 301 143 2548 28 0 56 chr12 7181627 7181948 -137100541 - AluY SINE Alu -8 303 1 2203 77 0 68 chr12 7181948 7182082 -137100407 - AluSc SINE Alu -166 143 1 407 150 36 66 chr12 7182082 7182108 -137100381 - L1ME LINE L1 -4177 2363 2342 1554 163 0 0 chr12 7182112 7182357 -137100132 - AluSg SINE Alu -65 245 1 975 231 9 14 chr12 7182357 7182573 -137099916 - MER58A DNA MER1_type -8 216 2 331 250 96 0 chr12 7182574 7182678 -137099811 - L1ME LINE L1 -4192 2348 2235 1912 164 0 13 chr12 7182793 7183091 -137099398 - AluJb SINE Alu -18 294 1 2275 101 3 0 chr12 7183102 7183398 -137099091 - AluSq SINE Alu -16 297 1 1255 255 103 12 chr12 7183409 7183915 -137098574 - L1ME LINE L1 -4317 2223 1672 1160 127 6 6 chr12 7183915 7184080 -137098409 - AluSg/x SINE Alu -13 297 133 253 214 114 0 chr12 7184090 7184160 -137098329 - L1ME LINE L1 -4873 1667 1590 2282 120 0 10 chr12 7184161 7184470 -137098019 - AluSq SINE Alu -7 306 1 548 215 132 96 chr12 7184480 7184875 -137097614 - L1ME LINE L1 -5224 1319 911 453 165 0 0 chr12 7185100 7185179 -137097310 + AluJ/FRAM SINE Alu 231 309 -3 344 341 65 0 chr12 7185293 7185431 -137097058 + L2 LINE L2 2917 3063 -209 334 325 8 43 chr12 7185685 7185802 -137096687 - MER5A DNA MER1_type -56 133 21 1044 244 137 57 chr12 7185809 7186305 -137096184 + MLT1E LTR MaLR 1 587 -6 2392 98 3 0 chr12 7187015 7187320 -137095169 + AluSx SINE Alu 1 306 -6 578 189 149 11 chr12 7187329 7187504 -137094985 + Charlie1 DNA MER1_type 1578 1776 -985 1074 190 0 0 chr12 7187504 7187701 -137094788 - AluJb SINE Alu 0 333 137 728 280 33 61 chr12 7187759 7188184 -137094305 - L2 LINE L2 -656 2658 2246 270 277 59 30 chr12 7188971 7189072 -137093417 + L2 LINE L2 3143 3246 -26 230 348 14 22 chr12 7189191 7189329 -137093160 + A-rich Low_complexity Low_complexity 4 140 0 2191 128 0 0 chr12 7190397 7190702 -137091787 - AluSx SINE Alu -7 305 1 251 164 36 36 chr12 7190702 7190746 -137091743 + L2 LINE L2 3221 3267 -5 1849 153 7 3 chr12 7190758 7191046 -137091443 + AluJb SINE Alu 1 289 -23 231 88 0 0 chr12 7192116 7192150 -137090339 + (GA)n Simple_repeat Simple_repeat 1 34 0 536 0 16 0 chr12 7192797 7192861 -137089628 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 441 103 0 0 chr12 7192861 7192919 -137089570 - AluSq SINE Alu -17 295 238 1250 117 6 17 chr12 7192928 7193108 -137089381 - AluSq SINE Alu -134 179 2 756 37 37 30 chr12 7193115 7193249 -137089240 + (TCTA)n Simple_repeat Simple_repeat 2 136 0 2208 92 28 0 chr12 7193249 7193533 -137088956 - AluSx SINE Alu -18 294 3 232 125 10 77 chr12 7193538 7193546 -137088943 + (TCTA)n Simple_repeat Simple_repeat 2 9 -89 2449 88 0 0 chr12 7193546 7193840 -137088649 - AluSx SINE Alu -18 294 1 232 125 10 77 chr12 7193840 7193935 -137088554 + (TCTA)n Simple_repeat Simple_repeat 9 98 0 2204 112 6 10 chr12 7193952 7194265 -137088224 - AluSx SINE Alu 0 312 1 304 304 93 31 chr12 7194270 7194464 -137088025 - L1MEd LINE L1 -4954 1165 960 300 111 0 0 chr12 7194466 7194511 -137087978 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 474 261 154 54 chr12 7194687 7195128 -137087361 - LTR33 LTR ERVL -15 506 22 576 186 10 0 chr12 7195939 7196041 -137086448 + FRAM SINE Alu 56 158 -18 965 126 81 17 chr12 7196194 7196368 -137086121 - MER5A DNA MER1_type -3 186 2 3155 182 31 52 chr12 7196586 7197348 -137085141 - LTR5 LTR ERVK 0 969 224 2416 51 0 10 chr12 7197351 7197643 -137084846 - AluY SINE Alu -10 301 13 1257 171 14 0 chr12 7197647 7197864 -137084625 - LTR5 LTR ERVK -749 220 1 2770 140 139 42 chr12 7198302 7198716 -137083773 - MER51D LTR ERV1 0 657 166 1937 109 0 0 chr12 7198716 7198964 -137083525 - AluSx SINE Alu -64 248 1 2770 140 139 42 chr12 7198964 7199148 -137083341 - MER51D LTR ERV1 -491 166 1 21 0 0 0 chr12 7199848 7199869 -137082620 + AT_rich Low_complexity Low_complexity 1 21 0 805 180 0 0 chr12 7199966 7200088 -137082401 + FLAM_C SINE Alu 7 128 -15 1982 158 0 0 chr12 7200098 7200389 -137082100 - AluJb SINE Alu -21 291 1 30 0 0 0 chr12 7200389 7200419 -137082070 + AT_rich Low_complexity Low_complexity 1 30 0 2160 128 3 0 chr12 7200419 7200715 -137081774 + AluSx SINE Alu 1 297 -15 2274 110 0 0 chr12 7200743 7201043 -137081446 - AluY SINE Alu -11 300 1 2206 131 0 3 chr12 7201051 7201357 -137081132 - AluSx SINE Alu -7 305 1 512 237 66 47 chr12 7201357 7201503 -137080986 - L1ME4a LINE L1 -1 6120 5965 1862 167 52 0 chr12 7201503 7201791 -137080698 - AluJb SINE Alu -9 303 1 512 237 66 47 chr12 7201791 7201901 -137080588 - L1ME4a LINE L1 -156 5965 5859 2121 105 14 10 chr12 7201922 7202216 -137080273 - AluSc SINE Alu -14 295 1 2156 137 7 0 chr12 7202332 7202632 -137079857 - AluSx SINE Alu -10 302 1 2259 91 0 3 chr12 7202686 7203013 -137079476 + AluY SINE Alu 1 326 0 2155 114 0 7 chr12 7203013 7203345 -137079144 + AluSc SINE Alu 1 309 0 270 0 0 0 chr12 7203346 7203376 -137079113 + (CA)n Simple_repeat Simple_repeat 1 30 0 2146 207 12 67 chr12 7203395 7203774 -137078715 + L1MD1 LINE L1 4019 4417 -1729 2003 145 3 43 chr12 7203774 7203918 -137078571 + AluJo SINE Alu 1 149 -163 2506 77 0 0 chr12 7203918 7204218 -137078271 + AluY SINE Alu 1 300 -11 2003 145 3 43 chr12 7204218 7204398 -137078091 + AluJo SINE Alu 149 312 0 2146 207 12 67 chr12 7204398 7204464 -137078025 + L1MD1 LINE L1 4417 4485 -1661 2235 127 7 0 chr12 7204464 7204771 -137077718 + AluSx SINE Alu 1 309 -3 2146 207 12 67 chr12 7204771 7204966 -137077523 + L1MD1 LINE L1 4485 4625 -1521 956 190 0 62 chr12 7204967 7205162 -137077327 + AluJo SINE Alu 125 307 -5 879 143 0 0 chr12 7205200 7205333 -137077156 + AluJb SINE Alu 1 133 -179 321 185 0 0 chr12 7205336 7205401 -137077088 + (CA)n Simple_repeat Simple_repeat 2 66 0 205 300 14 0 chr12 7205406 7205476 -137077013 + (TA)n Simple_repeat Simple_repeat 2 72 0 300 135 0 0 chr12 7205486 7205538 -137076951 - Alu SINE Alu 0 300 249 682 201 47 0 chr12 7205538 7205687 -137076802 + AluSg/x SINE Alu 150 305 -5 4935 145 70 11 chr12 7205693 7206069 -137076420 + L1MD1 LINE L1 5209 5561 -681 2698 42 0 0 chr12 7206069 7206378 -137076111 + AluY SINE Alu 1 309 -2 4935 145 70 11 chr12 7206378 7206982 -137075507 + L1MD1 LINE L1 5561 6239 -3 2305 112 3 0 chr12 7206983 7207287 -137075202 + AluSx SINE Alu 2 306 -6 2370 94 10 0 chr12 7207356 7207664 -137074825 + AluY SINE Alu 1 311 0 404 283 81 66 chr12 7207873 7208234 -137074255 - L1ME LINE L1 -351 5770 5310 1964 144 0 10 chr12 7208394 7208692 -137073797 + AluJb SINE Alu 1 295 -17 2409 84 0 0 chr12 7209074 7209370 -137073119 - AluSx SINE Alu -13 299 4 214 347 85 68 chr12 7209537 7209877 -137072612 - L2 LINE L2 -925 2389 2044 21 0 0 0 chr12 7210622 7210643 -137071846 + AT_rich Low_complexity Low_complexity 1 21 0 1414 156 0 59 chr12 7210645 7210664 -137071825 - AluJo SINE Alu 0 312 293 2379 76 3 58 chr12 7210664 7210994 -137071495 - AluSx SINE Alu 0 312 1 1414 156 0 59 chr12 7210994 7211230 -137071259 - AluJo SINE Alu -19 293 72 1646 159 8 0 chr12 7211301 7211552 -137070937 + AluSx SINE Alu 1 253 -59 2308 100 3 0 chr12 7211581 7211880 -137070609 + AluSp SINE Alu 1 300 -13 333 0 0 0 chr12 7211955 7211992 -137070497 + (TG)n Simple_repeat Simple_repeat 2 38 0 597 146 64 9 chr12 7211992 7212094 -137070395 - AluSg/x SINE Alu -25 284 174 993 166 6 0 chr12 7212096 7212253 -137070236 - FRAM SINE Alu -7 159 2 1245 193 93 32 chr12 7212257 7212537 -137069952 - AluJo SINE Alu -15 297 1 543 293 6 6 chr12 7212667 7212834 -137069655 - L1MC4a LINE L1 -1906 5902 5736 241 271 71 0 chr12 7212836 7212921 -137069568 - L1MC4a LINE L1 -2197 5611 5521 458 285 15 44 chr12 7212944 7213081 -137069408 + MIR SINE MIR 82 214 -48 220 148 0 37 chr12 7213735 7213789 -137068700 + (GGAGA)n Simple_repeat Simple_repeat 1 52 0 768 230 83 44 chr12 7214702 7214906 -137067583 + MIR SINE MIR 51 262 0 235 297 117 0 chr12 7215795 7215906 -137066583 + MIR SINE MIR 23 146 -62 205 290 81 0 chr12 7216010 7216072 -137066417 - MIR SINE MIR 0 262 196 343 266 0 0 chr12 7216103 7216194 -137066295 - MIR SINE MIR -99 109 19 529 154 0 15 chr12 7216839 7216975 -137065514 + (CA)n Simple_repeat Simple_repeat 2 135 0 294 269 0 0 chr12 7216991 7217147 -137065342 + (CA)n Simple_repeat Simple_repeat 1 156 0 695 201 6 0 chr12 7217190 7217369 -137065120 + (CA)n Simple_repeat Simple_repeat 1 180 0 200 221 0 15 chr12 7218109 7218177 -137064312 + G-rich Low_complexity Low_complexity 2 68 0 284 296 11 39 chr12 7218179 7218358 -137064131 + GA-rich Low_complexity Low_complexity 3 176 0 236 323 32 16 chr12 7218884 7219008 -137063481 - MIR SINE MIR -67 141 16 308 314 40 86 chr12 7219127 7219302 -137063187 - MIR SINE MIR -73 189 23 369 0 0 0 chr12 7219999 7220040 -137062449 + (TG)n Simple_repeat Simple_repeat 1 41 0 198 0 0 0 chr12 7220039 7220061 -137062428 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 261 167 0 0 chr12 7220934 7220988 -137061501 + GA-rich Low_complexity Low_complexity 1 54 0 300 282 0 29 chr12 7221292 7221395 -137061094 + CT-rich Low_complexity Low_complexity 3 102 0 203 103 26 0 chr12 7221896 7221935 -137060554 + CT-rich Low_complexity Low_complexity 2 41 0 238 324 124 14 chr12 7222421 7222566 -137059923 + L3b LINE CR1 1422 1582 -1 182 281 83 73 chr12 7225186 7225282 -137057207 - L2 LINE L2 -29 3284 3188 499 250 42 0 chr12 7227015 7227183 -137055306 + (TGGG)n Simple_repeat Simple_repeat 1 175 0 333 186 0 44 chr12 7227469 7227582 -137054907 + CT-rich Low_complexity Low_complexity 5 112 0 192 77 0 0 chr12 7227640 7227666 -137054823 + (CTG)n Simple_repeat Simple_repeat 3 28 0 22 0 0 0 chr12 7228021 7228043 -137054446 + GC_rich Low_complexity Low_complexity 1 22 0 211 200 0 0 chr12 7230778 7230823 -137051666 + (CA)n Simple_repeat Simple_repeat 1 45 0 270 275 139 9 chr12 7231233 7231404 -137051085 + MIR SINE MIR 3 198 -64 821 193 21 101 chr12 7231510 7231748 -137050741 - MER20 DNA MER1_type 0 219 1 2281 93 0 6 chr12 7231774 7232085 -137050404 - AluSx SINE Alu -3 309 1 2043 87 0 4 chr12 7232111 7232386 -137050103 + AluSg SINE Alu 37 310 0 589 281 15 39 chr12 7232393 7232596 -137049893 + MIR SINE MIR 61 258 -4 387 306 93 32 chr12 7233660 7233835 -137048654 - L2 LINE L2 -6 3266 3103 2286 86 0 7 chr12 7233835 7234137 -137048352 + AluSp SINE Alu 1 300 -13 387 306 93 32 chr12 7234137 7234272 -137048217 - L2 LINE L2 -169 3103 2937 746 177 13 13 chr12 7234311 7234469 -137048020 + MIR SINE MIR 61 218 -44 2089 109 3 7 chr12 7234482 7234776 -137047713 + AluSq SINE Alu 1 293 -20 255 31 0 0 chr12 7234781 7234813 -137047676 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 1871 130 23 10 chr12 7235130 7235431 -137047058 + AluJb SINE Alu 6 310 -2 402 283 62 14 chr12 7237585 7237730 -137044759 + MIR SINE MIR 103 254 -8 189 107 0 0 chr12 7238515 7238543 -137043946 + (GGA)n Simple_repeat Simple_repeat 3 30 0 189 0 0 0 chr12 7240075 7240096 -137042393 + (CAGGC)n Simple_repeat Simple_repeat 3 23 0 258 301 14 14 chr12 7240928 7241001 -137041488 - L2 LINE L2 0 3272 3200 570 181 16 16 chr12 7241130 7241257 -137041232 + MER104 DNA Tc2 1 127 -53 584 283 12 6 chr12 7241281 7241447 -137041042 - MIR SINE MIR -16 246 80 887 139 8 0 chr12 7241448 7241577 -137040912 + FLAM_C SINE Alu 1 130 -3 562 322 55 15 chr12 7241765 7241967 -137040522 - MER63A DNA MER1_type 0 210 1 2243 105 0 16 chr12 7243275 7243588 -137038901 - AluSx SINE Alu -4 308 1 1798 175 3 3 chr12 7243599 7243902 -137038587 - AluJo SINE Alu -9 303 1 1308 251 60 9 chr12 7243984 7244403 -137038086 - L1MC4 LINE L1 -131 7911 7472 372 287 81 22 chr12 7245459 7245595 -137036894 + MIR3 SINE MIR 39 182 -26 504 200 0 0 chr12 7245795 7245920 -137036569 + (CA)n Simple_repeat Simple_repeat 1 125 0 410 353 8 46 chr12 7246822 7247063 -137035426 - L2 LINE L2 -493 2821 2590 755 193 0 7 chr12 7247113 7247248 -137035241 + AluJo SINE Alu 10 143 -169 2030 146 0 10 chr12 7247249 7247558 -137034931 + AluJb SINE Alu 1 306 -6 433 283 256 33 chr12 7247559 7247958 -137034531 - L2 LINE L2 -789 2525 2038 1754 149 43 0 chr12 7249186 7249343 -137033146 - AluJb SINE Alu -16 296 120 209 33 33 0 chr12 7249343 7249373 -137033116 + (TG)n Simple_repeat Simple_repeat 2 32 0 1754 149 43 0 chr12 7249373 7249497 -137032992 - AluJb SINE Alu -192 120 3 1567 155 14 14 chr12 7253669 7253946 -137028543 + AluJo SINE Alu 16 292 -20 258 299 17 51 chr12 7254422 7254539 -137027950 - MIR SINE MIR -142 120 8 1848 133 13 33 chr12 7256185 7256485 -137026004 + AluJo SINE Alu 1 294 -18 399 318 165 34 chr12 7257051 7257372 -137025117 - L2 LINE L2 -2 3311 2949 187 325 114 44 chr12 7257384 7257498 -137024991 + L3 LINE CR1 1454 1575 -2 900 140 0 22 chr12 7257918 7258054 -137024435 + FLAM_C SINE Alu 1 133 0 2243 74 0 14 chr12 7258827 7259136 -137023353 - AluSc SINE Alu 0 305 1 748 138 0 9 chr12 7261316 7261425 -137021064 - FLAM_C SINE Alu -33 110 3 237 254 0 167 chr12 7262065 7262203 -137020286 - MIR SINE MIR -61 147 33 2391 55 0 0 chr12 7263589 7263880 -137018609 + AluY SINE Alu 1 291 -20 963 100 0 23 chr12 7264614 7264744 -137017745 - FLAM_C SINE Alu -6 127 1 706 226 45 23 chr12 7264746 7264923 -137017566 + MER58A DNA MER1_type 42 222 -2 220 215 0 75 chr12 7266571 7266664 -137015825 + G-rich Low_complexity Low_complexity 4 89 0 26 0 0 0 chr12 7266888 7266914 -137015575 + GC_rich Low_complexity Low_complexity 1 26 0 276 244 108 30 chr12 7269032 7269153 -137013336 - MIR SINE MIR -60 148 23 196 283 17 17 chr12 7273220 7273280 -137009209 + MIR SINE MIR 45 104 -104 1320 113 9 75 chr12 7273284 7273465 -137009024 - AluJo SINE Alu -10 302 135 2272 117 7 0 chr12 7273465 7273772 -137008717 - AluSq SINE Alu -4 309 1 1320 113 9 75 chr12 7273772 7273803 -137008686 - AluJo SINE Alu -177 135 104 296 129 0 17 chr12 7273803 7273863 -137008626 - Alu SINE Alu -257 42 1 431 257 46 0 chr12 7273869 7273978 -137008511 + MIR SINE MIR 134 247 -15 721 275 46 14 chr12 7274023 7274241 -137008248 + MIR SINE MIR 2 226 -36 2229 96 20 3 chr12 7274508 7274800 -137007689 - AluSg SINE Alu -13 297 1 428 314 117 80 chr12 7274889 7275141 -137007348 - L2 LINE L2 -341 2973 2732 1286 184 3 108 chr12 7275141 7275473 -137007016 - AluY SINE Alu -14 297 1 428 314 117 80 chr12 7275473 7275544 -137006945 - L2 LINE L2 -582 2732 2665 2513 80 3 0 chr12 7275544 7275844 -137006645 + AluSp SINE Alu 1 301 -12 428 314 117 80 chr12 7275844 7275989 -137006500 - L2 LINE L2 -649 2665 2527 2482 93 0 0 chr12 7275989 7276299 -137006190 + AluSx SINE Alu 1 310 -2 428 314 117 80 chr12 7276299 7276587 -137005902 - L2 LINE L2 -787 2527 2187 1347 122 102 86 chr12 7276869 7277002 -137005487 + AluSg1 SINE Alu 1 130 -179 2085 94 54 27 chr12 7277002 7277300 -137005189 + AluSx SINE Alu 1 306 -6 1676 81 0 0 chr12 7277302 7277500 -137004989 + AluSx SINE Alu 1 198 -114 1347 122 102 86 chr12 7277500 7277620 -137004869 + AluSg1 SINE Alu 130 265 -44 195 42 0 0 chr12 7277620 7277644 -137004845 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1347 122 102 86 chr12 7277644 7277690 -137004799 + AluSg1 SINE Alu 265 309 0 2217 82 0 0 chr12 7277693 7277961 -137004528 + AluSp SINE Alu 44 311 -2 504 0 0 0 chr12 7278026 7278082 -137004407 + (TA)n Simple_repeat Simple_repeat 1 56 0 1775 94 22 4 chr12 7278137 7278412 -137004077 + L1PB1 LINE L1 5872 6151 0 1863 147 14 7 chr12 7278528 7278821 -137003668 + AluSx SINE Alu 1 295 -17 234 62 0 0 chr12 7278953 7278985 -137003504 + (CTG)n Simple_repeat Simple_repeat 1 32 0 2301 96 0 10 chr12 7279006 7279307 -137003182 + AluSx SINE Alu 1 298 -14 41 14 0 56 chr12 7279401 7279444 -137003045 + AT_rich Low_complexity Low_complexity 1 45 -22 2439 66 0 26 chr12 7279444 7279749 -137002740 + AluY SINE Alu 1 297 -14 667 183 0 9 chr12 7279749 7279864 -137002625 - FLAM_A SINE Alu -15 118 5 1593 154 108 7 chr12 7279864 7280143 -137002346 - AluJo SINE Alu -5 307 1 41 14 0 56 chr12 7280143 7280168 -137002321 + AT_rich Low_complexity Low_complexity 42 67 0 1780 159 3 14 chr12 7280168 7280457 -137002032 - AluJb SINE Alu -26 286 1 693 244 74 33 chr12 7280498 7280616 -137001873 - L1ME3 LINE L1 -1 6161 6049 1684 149 52 17 chr12 7280616 7280904 -137001585 + AluJb SINE Alu 1 298 -14 2648 21 0 0 chr12 7280904 7281227 -137001262 + AluY SINE Alu 1 323 0 693 244 74 33 chr12 7281227 7281348 -137001141 - L1ME3 LINE L1 -112 6050 5910 611 203 182 0 chr12 7281357 7281500 -137000989 + FRAM SINE Alu 1 40 0 566 204 113 50 chr12 7281504 7281648 -137000841 - L1ME3 LINE L1 -252 5912 5748 2108 134 7 0 chr12 7281648 7281938 -137000551 - AluSx SINE Alu -20 292 1 566 204 113 50 chr12 7281938 7282014 -137000475 - L1ME3 LINE L1 -416 5748 5678 357 127 0 0 chr12 7282103 7282158 -137000331 + MER101 LTR ERV1 403 457 -17 1189 194 23 81 chr12 7282158 7282272 -137000217 + AluJo SINE Alu 21 140 -172 2208 76 4 0 chr12 7282272 7282536 -136999953 - AluSp SINE Alu -48 265 1 1189 194 23 81 chr12 7282536 7282731 -136999758 + AluJo SINE Alu 140 312 0 282 223 12 56 chr12 7282748 7282855 -136999634 - L1ME3 LINE L1 -470 5700 5598 269 270 10 40 chr12 7283978 7284078 -136998411 - L2 LINE L2 -967 2347 2251 2307 92 7 0 chr12 7284536 7284829 -136997660 - AluSg SINE Alu -15 295 1 8313 58 7 0 chr12 7285041 7286003 -136996486 - LTR5 LTR ERVK 0 969 1 249 157 0 0 chr12 7286031 7286071 -136996418 + A-rich Low_complexity Low_complexity 1 43 -8 2056 143 3 10 chr12 7286071 7286385 -136996104 + AluSx SINE Alu 1 312 0 586 240 40 23 chr12 7286581 7286756 -136995733 - FRAM SINE Alu 0 176 1 2101 117 3 58 chr12 7286868 7287194 -136995295 + AluSx SINE Alu 1 308 -4 1676 160 56 4 chr12 7287266 7287570 -136994919 - AluJb SINE Alu 0 318 1 320 312 32 32 chr12 7287604 7287761 -136994728 - Tigger7 DNA MER2_type -1016 1471 1315 1915 131 31 0 chr12 7287968 7288258 -136994231 - AluSx SINE Alu -8 304 6 2238 106 7 0 chr12 7288524 7288816 -136993673 - AluSg SINE Alu -16 294 1 698 214 0 40 chr12 7289078 7289251 -136993238 - FRAM SINE Alu 0 166 1 2452 93 0 0 chr12 7289298 7289608 -136992881 - AluSq SINE Alu -3 310 1 333 308 161 0 chr12 7290051 7290181 -136992308 - MIR SINE MIR -71 191 41 257 169 0 101 chr12 7290254 7290343 -136992146 + (CCCCG)n Simple_repeat Simple_repeat 3 82 0 843 173 18 30 chr12 7290989 7291157 -136991332 + FRAM SINE Alu 1 164 -12 2216 114 10 0 chr12 7291234 7291542 -136990947 - AluSx SINE Alu -1 311 1 1019 176 0 0 chr12 7291741 7291900 -136990589 + AluJb SINE Alu 137 295 -17 281 233 33 0 chr12 7291901 7291961 -136990528 - L2 LINE L2 -18 3295 3234 1940 151 23 7 chr12 7291986 7292291 -136990198 + AluJo SINE Alu 1 310 -2 198 246 18 18 chr12 7292319 7292376 -136990113 - L2 LINE L2 -848 2466 2410 2193 113 7 0 chr12 7292385 7292677 -136989812 + AluSq SINE Alu 1 294 -19 203 152 0 0 chr12 7292696 7292729 -136989760 + (CA)n Simple_repeat Simple_repeat 2 34 0 2280 121 0 6 chr12 7292825 7293139 -136989350 + AluSx SINE Alu 1 312 0 1814 164 44 19 chr12 7293497 7293863 -136988626 + THE1C LTR MaLR 1 375 0 1797 178 28 0 chr12 7294164 7294286 -136988203 + AluJb SINE Alu 1 118 -194 192 40 0 0 chr12 7294286 7294311 -136988178 + (CA)n Simple_repeat Simple_repeat 2 26 0 1797 178 28 0 chr12 7294311 7294475 -136988014 + AluJb SINE Alu 118 295 -17 2499 74 3 16 chr12 7294481 7294793 -136987696 + AluSq SINE Alu 1 308 -5 1480 166 35 55 chr12 7294793 7295082 -136987407 + AluJo SINE Alu 1 283 -29 1713 143 66 30 chr12 7295082 7295197 -136987292 + AluSx SINE Alu 1 110 -202 432 0 0 0 chr12 7295197 7295245 -136987244 + (CTA)n Simple_repeat Simple_repeat 1 48 0 1713 143 66 30 chr12 7295245 7295430 -136987059 + AluSx SINE Alu 110 312 0 272 274 35 0 chr12 7295462 7295575 -136986914 + L1M4 LINE L1 4735 4851 -1295 407 309 147 27 chr12 7295585 7295918 -136986571 + L1M4 LINE L1 4877 5249 -897 2415 158 164 8 chr12 7295934 7296423 -136986066 + MLT1F1 LTR MaLR 1 565 -2 1348 148 0 15 chr12 7296436 7296638 -136985851 + AluJo SINE Alu 1 199 -113 1048 109 0 0 chr12 7296639 7296786 -136985703 + AluSg/x SINE Alu 153 299 -13 2403 91 0 0 chr12 7297170 7297467 -136985022 + AluSc SINE Alu 1 297 -12 2427 100 0 0 chr12 7297471 7297772 -136984717 + AluSq SINE Alu 1 301 -12 1982 151 7 10 chr12 7297811 7297979 -136984510 - AluSx SINE Alu -9 303 136 260 0 0 54 chr12 7297979 7298016 -136984473 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1887 108 17 45 chr12 7298016 7298304 -136984185 - AluSg SINE Alu -30 280 1 1982 151 7 10 chr12 7298304 7298438 -136984051 - AluSx SINE Alu -174 138 1 1606 153 0 34 chr12 7298519 7298787 -136983702 + AluJo SINE Alu 2 260 -52 225 244 0 0 chr12 7298822 7298867 -136983622 + MER5A DNA MER1_type 9 53 -136 605 177 0 9 chr12 7299043 7299156 -136983333 + FRAM SINE Alu 1 104 -72 1801 210 78 12 chr12 7299160 7299584 -136982905 + MER66A LTR ERV1 27 478 0 1594 151 68 17 chr12 7299616 7299710 -136982779 - MER51A LTR ERV1 0 634 546 1621 86 70 45 chr12 7299710 7299954 -136982535 - AluSg SINE Alu -6 304 55 1594 151 68 17 chr12 7299954 7300324 -136982165 - MER51A LTR ERV1 -88 546 2 262 208 0 0 chr12 7300325 7300373 -136982116 + AluJo/FLAM SINE Alu 86 133 -169 2611 48 0 22 chr12 7300376 7300692 -136981797 + AluY SINE Alu 3 311 0 2258 110 0 0 chr12 7300860 7301159 -136981330 - AluSx SINE Alu -13 299 1 1229 118 0 0 chr12 7301159 7301320 -136981169 - AluSg/x SINE Alu -18 292 132 2309 78 20 3 chr12 7301320 7301614 -136980875 - AluSq SINE Alu -14 299 1 204 258 15 15 chr12 7301973 7302039 -136980450 + MIR SINE MIR 197 262 0 2119 144 0 6 chr12 7302182 7302495 -136979994 + AluJo SINE Alu 1 311 -1 555 332 18 9 chr12 7302770 7302987 -136979502 - MIR SINE MIR -21 241 23 318 231 128 13 chr12 7303243 7303378 -136979111 + MIR SINE MIR 100 256 -6 240 302 0 0 chr12 7304866 7304929 -136977560 + GA-rich Low_complexity Low_complexity 2 64 0 734 284 62 37 chr12 7305944 7306265 -136976224 - L2 LINE L2 0 3313 2985 203 260 27 14 chr12 7306644 7306717 -136975772 + MIR3 SINE MIR 6 79 -129 2471 176 97 36 chr12 7306902 7307426 -136975063 - MER21A LTR ERV1 0 931 376 953 138 67 119 chr12 7307432 7307496 -136974993 - MER21A LTR ERV1 -668 263 197 2443 92 0 0 chr12 7307496 7307802 -136974687 + AluSx SINE Alu 1 306 -6 1706 65 0 28 chr12 7307811 7308025 -136974464 + AluY SINE Alu 94 301 -10 953 138 67 119 chr12 7308025 7308219 -136974270 - MER21A LTR ERV1 -742 189 9 306 258 53 60 chr12 7308219 7308370 -136974119 + L1MCa LINE L1 1942 2091 -4335 * 367 310 39 35 chr12 7308235 7308438 -136974051 - L1MC5 LINE L1 -182 7779 7576 348 286 57 51 chr12 7308377 7308650 -136973839 + L1MCa LINE L1 1907 2091 -4335 * 47 0 0 0 chr12 7308650 7308697 -136973792 + AT_rich Low_complexity Low_complexity 1 47 0 332 328 0 47 chr12 7309399 7309483 -136973006 - L2 LINE L2 -1 3271 3193 1669 142 39 90 chr12 7309483 7309608 -136972881 + AluJo SINE Alu 1 131 -181 1890 168 3 13 chr12 7309608 7309923 -136972566 + AluJb SINE Alu 1 312 0 1669 142 39 90 chr12 7309923 7310108 -136972381 + AluJo SINE Alu 131 295 -17 332 328 0 47 chr12 7310108 7310151 -136972338 - L2 LINE L2 -79 3193 3150 252 228 215 0 chr12 7310707 7310786 -136971703 + MER20B DNA MER1_type 68 163 -620 1846 159 20 7 chr12 7310909 7311204 -136971285 + AluJo SINE Alu 3 301 -11 1018 136 28 40 chr12 7311373 7311549 -136970940 - AluJo SINE Alu -54 258 85 2380 101 0 0 chr12 7312737 7313044 -136969445 - AluSc SINE Alu -2 307 1 230 222 0 25 chr12 7313740 7313821 -136968668 + (CCG)n Simple_repeat Simple_repeat 1 79 0 213 333 11 11 chr12 7316404 7316491 -136965998 + L3b LINE CR1 1303 1389 -194 2411 42 42 3 chr12 7317535 7317820 -136964669 - AluY SINE Alu -15 296 1 2569 66 0 0 chr12 7317881 7318185 -136964304 + AluSx SINE Alu 1 304 -8 313 218 218 58 chr12 7318345 7318551 -136963938 + MIR SINE MIR 3 241 -21 568 306 31 0 chr12 7319302 7319524 -136962965 + L3b LINE CR1 1190 1418 -165 2310 93 3 3 chr12 7319568 7319880 -136962609 - AluSp SINE Alu -1 312 1 966 119 0 7 chr12 7319898 7320041 -136962448 - FLAM_C SINE Alu -1 142 1 1264 118 165 9 chr12 7320047 7320259 -136962230 - AluSx SINE Alu -67 245 1 1715 181 14 0 chr12 7320293 7320586 -136961903 + AluJb SINE Alu 1 297 -15 200 33 0 33 chr12 7322469 7322499 -136959990 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 336 48 0 0 chr12 7324281 7324323 -136958166 + (TG)n Simple_repeat Simple_repeat 1 42 0 2132 85 20 0 chr12 7325655 7325949 -136956540 - AluSx SINE Alu -12 300 1 248 214 10 61 chr12 7326760 7326911 -136955578 + CT-rich Low_complexity Low_complexity 1 143 0 196 98 24 24 chr12 7326918 7326959 -136955530 + (TCTCCC)n Simple_repeat Simple_repeat 1 41 0 310 201 12 67 chr12 7327120 7327338 -136955151 + (CGGGG)n Simple_repeat Simple_repeat 1 206 0 25 51 0 0 chr12 7327399 7327438 -136955051 + GC_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr12 7327574 7327603 -136954886 + GC_rich Low_complexity Low_complexity 1 29 0 508 240 116 14 chr12 7329227 7329373 -136953116 + MIR3 SINE MIR 16 176 -32 2236 45 0 21 chr12 7329694 7330011 -136952478 + AluY SINE Alu 1 311 0 198 0 0 0 chr12 7330590 7330612 -136951877 + (A)n Simple_repeat Simple_repeat 1 22 0 2341 99 0 3 chr12 7330612 7330926 -136951563 + AluSq SINE Alu 1 313 0 2399 80 3 3 chr12 7330932 7331244 -136951245 + AluSq SINE Alu 1 312 -1 698 266 76 25 chr12 7332138 7332375 -136950114 + MIR SINE MIR 1 249 -13 1901 118 90 0 chr12 7332391 7332670 -136949819 - AluSg SINE Alu -6 304 1 2085 124 16 0 chr12 7334061 7334368 -136948121 - AluSx SINE Alu 0 312 1 223 239 0 0 chr12 7335601 7335647 -136946842 + CT-rich Low_complexity Low_complexity 2 47 0 489 34 0 0 chr12 7335897 7335956 -136946533 + (CAG)n Simple_repeat Simple_repeat 1 59 0 228 67 0 0 chr12 7337303 7337333 -136945156 + (CGCTG)n Simple_repeat Simple_repeat 4 33 0 2034 129 0 7 chr12 7338681 7338984 -136943505 - AluJb SINE Alu -11 301 1 2151 86 0 33 chr12 7339168 7339470 -136943019 - AluSc SINE Alu -17 292 1 1905 112 0 7 chr12 7339479 7339748 -136942741 - AluSx SINE Alu -45 267 1 190 370 50 42 chr12 7340358 7340477 -136942012 + MIR SINE MIR 20 139 -123 23 0 0 0 chr12 7341406 7341429 -136941060 + AT_rich Low_complexity Low_complexity 1 23 0 1414 160 141 0 chr12 7341772 7342034 -136940455 + AluJo SINE Alu 3 301 -1 2026 108 7 7 chr12 7342204 7342500 -136939989 + AluSg SINE Alu 1 296 -14 536 32 0 0 chr12 7342997 7343059 -136939430 + U7 snRNA snRNA 2 63 0 1802 131 93 44 chr12 7344032 7344375 -136938114 - MER46B DNA MER2_type -1 235 1 1158 286 52 50 chr12 7346362 7346568 -136935921 - L2 LINE L2 -2 3311 3107 2010 138 7 3 chr12 7346568 7346873 -136935616 + AluJo SINE Alu 1 306 -6 1158 286 52 50 chr12 7346873 7347110 -136935379 - L2 LINE L2 -206 3107 2867 831 126 0 0 chr12 7347194 7347313 -136935176 + AluJo/FLAM SINE Alu 11 129 -183 1465 196 47 17 chr12 7347315 7347433 -136935056 + AluJb SINE Alu 3 116 -241 204 67 0 0 chr12 7347433 7347463 -136935026 + (CTA)n Simple_repeat Simple_repeat 1 30 0 1465 196 47 17 chr12 7347463 7347690 -136934799 + AluJb SINE Alu 116 357 0 310 293 43 17 chr12 7347691 7347807 -136934682 + L1M4 LINE L1 3073 3191 -2955 2131 102 0 22 chr12 7347839 7348153 -136934336 + AluSg SINE Alu 1 307 -3 571 236 82 32 chr12 7348609 7348829 -136933660 + MIR SINE MIR 2 232 -30 196 355 0 0 chr12 7348850 7348926 -136933563 - MIR SINE MIR -101 161 86 1925 86 119 0 chr12 7348992 7349260 -136933229 - AluSg SINE Alu 0 300 1 246 289 0 0 chr12 7349263 7349339 -136933150 - L1ME3 LINE L1 -68 6094 6019 311 310 113 7 chr12 7349362 7349504 -136932985 - HAL1 LINE L1 -1 2506 2350 896 277 28 16 chr12 7349936 7350185 -136932304 + MIR SINE MIR 9 260 -2 246 310 78 17 chr12 7351631 7351747 -136930742 - L3 LINE CR1 -125 1452 1330 215 365 151 0 chr12 7352203 7352362 -136930127 - L3 LINE CR1 -809 768 586 601 100 89 0 chr12 7353624 7353714 -136928775 + AluJb SINE Alu 172 269 -43 557 247 25 19 chr12 7353743 7353901 -136928588 + MIR SINE MIR 87 245 -17 223 336 103 54 chr12 7356267 7356618 -136925871 + L2 LINE L2 2899 3266 -6 308 244 26 0 chr12 7356632 7356710 -136925779 - MIR SINE MIR -98 110 31 537 186 150 0 chr12 7357966 7358079 -136924410 + MIR SINE MIR 63 192 -70 272 345 59 8 chr12 7359747 7359866 -136922623 - L2 LINE L2 -5 3267 3143 633 268 141 42 chr12 7360760 7360973 -136921516 - MIR SINE MIR -13 249 16 2133 102 3 13 chr12 7365923 7366228 -136916261 - AluSx SINE Alu -10 302 1 216 188 0 62 chr12 7367204 7367268 -136915221 + G-rich Low_complexity Low_complexity 4 63 0 180 231 77 39 chr12 7368428 7368506 -136913983 - L2 LINE L2 -72 3241 3161 200 259 69 0 chr12 7368532 7368590 -136913899 - MIR SINE MIR -90 172 111 2451 53 3 0 chr12 7368798 7369098 -136913391 + AluSx SINE Alu 1 301 -11 2231 87 0 6 chr12 7370444 7370755 -136911734 - AluSx SINE Alu -3 309 1 1087 79 13 0 chr12 7371246 7371398 -136911091 - AluSg/x SINE Alu -10 302 149 1609 173 13 16 chr12 7372013 7372319 -136910170 - AluJb SINE Alu -7 305 1 1754 157 49 0 chr12 7372360 7372647 -136909842 - AluSx SINE Alu -11 301 1 2173 61 46 0 chr12 7372741 7373021 -136909468 - AluY SINE Alu -18 293 1 736 155 148 7 chr12 7373308 7373463 -136909026 - MER5A DNA MER1_type -10 179 3 2082 100 7 0 chr12 7375622 7375911 -136906578 + AluSx SINE Alu 1 291 -21 196 282 175 0 chr12 7377164 7377267 -136905222 - L2 LINE L2 -57 3215 3095 1622 158 16 41 chr12 7379202 7379518 -136902971 - AluJo SINE Alu 0 312 5 1603 160 7 27 chr12 7379542 7379835 -136902654 - AluJo SINE Alu -25 287 1 255 103 0 0 chr12 7379836 7379875 -136902614 + (CCTA)n Simple_repeat Simple_repeat 1 39 0 465 105 132 0 chr12 7381298 7381374 -136901115 - AluJb SINE Alu -142 170 85 917 128 0 14 chr12 7381376 7381517 -136900972 - AluJb SINE Alu -173 139 1 222 379 73 0 chr12 7381674 7381798 -136900691 - MIR3 SINE MIR -65 143 11 24 32 0 0 chr12 7382106 7382137 -136900352 + AT_rich Low_complexity Low_complexity 1 31 0 561 168 19 0 chr12 7382150 7382257 -136900232 - FRAM SINE Alu -1 175 67 820 149 0 43 chr12 7383039 7383180 -136899309 + AluJo SINE Alu 1 135 -177 1875 134 7 7 chr12 7383762 7384060 -136898429 - AluJo SINE Alu -11 301 4 180 0 0 0 chr12 7384268 7384288 -136898201 + (A)n Simple_repeat Simple_repeat 1 20 0 2284 70 3 16 chr12 7384288 7384602 -136897887 + AluY SINE Alu 1 310 -1 2037 92 3 50 chr12 7384613 7384930 -136897559 + AluSx SINE Alu 6 307 -5 2039 117 13 0 chr12 7384942 7385240 -136897249 + AluSq SINE Alu 1 302 -11 316 243 0 0 chr12 7385240 7385310 -136897179 + Tigger2 DNA MER2_type 2649 2718 0 274 268 0 0 chr12 7385347 7385403 -136897086 - L2 LINE L2 0 3272 3217 21 0 0 0 chr12 7385711 7385732 -136896757 + AT_rich Low_complexity Low_complexity 1 21 0 2206 61 27 10 chr12 7386954 7387248 -136895241 + AluSp SINE Alu 1 299 -14 2283 32 56 3 chr12 7387423 7387707 -136894782 - AluY SINE Alu -12 299 1 1697 148 0 48 chr12 7388000 7388333 -136894156 + AluJo SINE Alu 1 312 0 2323 69 0 0 chr12 7388337 7388628 -136893861 + AluY SINE Alu 1 291 -20 360 0 0 0 chr12 7388636 7388676 -136893813 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 4512 165 74 42 chr12 7388676 7388752 -136893737 - Charlie1a DNA MER1_type -1355 1406 1334 2018 128 20 0 chr12 7388752 7389056 -136893433 + AluSx SINE Alu 3 312 0 4512 165 74 42 chr12 7389056 7390025 -136892464 - Charlie1a DNA MER1_type -1427 1334 324 994 117 35 0 chr12 7390027 7390172 -136892317 + AluSx SINE Alu 4 153 -159 962 161 124 0 chr12 7390233 7390265 -136892224 + AluJb SINE Alu 87 114 -198 221 0 0 33 chr12 7390265 7390295 -136892194 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 962 161 124 0 chr12 7390295 7390455 -136892034 + AluJb SINE Alu 114 303 -9 1480 198 32 18 chr12 7390455 7390738 -136891751 - Charlie1a DNA MER1_type -1159 296 10 1161 167 39 10 chr12 7390880 7391084 -136891405 + MER2 DNA MER2_type 1 210 -135 27 29 0 0 chr12 7391084 7391118 -136891371 + AT_rich Low_complexity Low_complexity 1 34 0 289 171 0 0 chr12 7391123 7391164 -136891325 + MER2 DNA MER2_type 304 344 -1 2383 151 15 96 chr12 7391187 7391268 -136891221 - L1MB7 LINE L1 -16 6168 6082 2158 92 14 0 chr12 7391268 7391560 -136890929 + AluSc SINE Alu 2 297 -12 2383 151 15 96 chr12 7391560 7391898 -136890591 - L1MB7 LINE L1 -102 6082 5797 823 179 0 0 chr12 7391898 7392021 -136890468 - FLAM_C SINE Alu -10 123 1 2383 151 15 96 chr12 7392021 7392123 -136890366 - L1MB7 LINE L1 -387 5797 5688 774 146 0 0 chr12 7392123 7392233 -136890256 - FLAM_C SINE Alu -20 123 14 458 88 0 100 chr12 7392235 7392315 -136890174 - L1M4 LINE L1 -493 5691 5620 2087 118 0 0 chr12 7392315 7392611 -136889878 - AluSx SINE Alu -10 302 7 1473 161 47 0 chr12 7392611 7392864 -136889625 - AluJb SINE Alu -46 266 1 190 231 15 62 chr12 7392864 7392929 -136889560 - MER5C DNA MER1_type -225 99 38 416 339 148 32 chr12 7392959 7393306 -136889183 + L2 LINE L2 2100 2405 -909 2247 82 0 3 chr12 7393306 7393598 -136888891 + AluSg SINE Alu 5 295 -15 416 339 148 32 chr12 7393598 7393672 -136888817 + L2 LINE L2 2405 2469 -845 195 100 0 0 chr12 7393672 7393702 -136888787 + (CACCAT)n Simple_repeat Simple_repeat 6 35 0 416 339 148 32 chr12 7393702 7393875 -136888614 + L2 LINE L2 2469 2764 -550 966 238 101 88 chr12 7393886 7394696 -136887793 + L2 LINE L2 2503 3312 -1 283 264 0 42 chr12 7394727 7394799 -136887690 - L2 LINE L2 -7 3306 3238 538 135 0 11 chr12 7395202 7395291 -136887198 - Charlie2 DNA MER1_type -4 2858 2771 1002 186 0 0 chr12 7395298 7395470 -136887019 - AluJb SINE Alu -1 311 140 441 0 0 0 chr12 7395489 7395538 -136886951 + (TG)n Simple_repeat Simple_repeat 2 50 0 1661 130 32 40 chr12 7395538 7395690 -136886799 - AluSx SINE Alu -27 285 134 2289 88 3 0 chr12 7395690 7395995 -136886494 - AluSp SINE Alu -7 306 1 1661 130 32 40 chr12 7395995 7396119 -136886370 - AluSx SINE Alu -178 134 11 1633 196 0 0 chr12 7396139 7396425 -136886064 - AluJo SINE Alu -26 286 1 271 161 306 0 chr12 7396469 7396531 -136885958 - Charlie2a DNA MER1_type -1258 1604 1524 443 306 90 0 chr12 7396943 7397087 -136885402 - MIR3 SINE MIR -35 173 17 189 267 13 80 chr12 7397946 7398021 -136884468 + MIR SINE MIR 37 106 -156 2257 92 0 3 chr12 7398023 7398329 -136884160 - AluY SINE Alu -6 305 1 542 131 161 95 chr12 7398502 7398639 -136883850 + MER69 DNA AcHobo 2 147 -2379 388 183 0 0 chr12 7398633 7398704 -136883785 + MER69 DNA AcHobo 2447 2517 -9 * 193 321 86 25 chr12 7399345 7399426 -136883063 - MIR3 SINE MIR -22 186 101 2272 87 0 0 chr12 7400051 7400349 -136882140 + AluSg SINE Alu 1 298 -12 253 180 0 38 chr12 7400791 7400851 -136881638 - FLAM SINE Alu -9 124 76 2780 16 0 0 chr12 7400963 7401276 -136881213 + AluYb8 SINE Alu 1 313 -5 191 176 0 29 chr12 7401276 7401310 -136881179 + MER5A DNA MER1_type 44 76 -113 955 252 52 20 chr12 7401634 7401884 -136880605 - MIR SINE MIR -2 260 3 273 299 31 16 chr12 7402067 7402194 -136880295 + L2 LINE L2 2687 2815 -499 4748 137 46 28 chr12 7402271 7403257 -136879232 - L1MB7 LINE L1 -47 6137 5133 26 64 0 0 chr12 7403327 7403374 -136879115 + AT_rich Low_complexity Low_complexity 1 47 0 1795 133 0 0 chr12 7403578 7403841 -136878648 - AluSx SINE Alu -49 263 1 2186 73 3 26 chr12 7404370 7404673 -136877816 - AluSq SINE Alu -17 296 1 2386 80 0 0 chr12 7404816 7405117 -136877372 - AluSx SINE Alu -11 301 1 1125 123 0 0 chr12 7405929 7406091 -136876398 + AluSg/x SINE Alu 138 299 -13 233 237 17 34 chr12 7406266 7406325 -136876164 + MIR SINE MIR 79 136 -126 1917 109 4 0 chr12 7406417 7406683 -136875806 - AluSx SINE Alu -45 267 1 779 229 47 0 chr12 7406756 7406926 -136875563 - MER5A DNA MER1_type -1 188 11 258 267 47 0 chr12 7406976 7407062 -136875427 - MIR SINE MIR -10 252 163 223 323 54 31 chr12 7407590 7407720 -136874769 + L2 LINE L2 2911 3043 -229 183 80 0 0 chr12 7407733 7407758 -136874731 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 820 196 14 14 chr12 7407758 7407906 -136874583 - AluJb SINE Alu -32 280 133 904 211 0 0 chr12 7408168 7408329 -136874160 - FRAM SINE Alu -20 156 1 1501 173 3 63 chr12 7408339 7408657 -136873832 - AluJb SINE Alu -13 299 1 1880 157 3 10 chr12 7408685 7408998 -136873491 + AluJb SINE Alu 1 311 -1 243 328 0 0 chr12 7409091 7409152 -136873337 - MIR3 SINE MIR -14 194 134 435 315 18 30 chr12 7409705 7409870 -136872619 + MIR SINE MIR 100 262 0 238 304 122 41 chr12 7409918 7410188 -136872301 + L2 LINE L2 2152 2443 -871 732 298 207 15 chr12 7410252 7410949 -136871540 - L2 LINE L2 0 3272 2431 372 291 116 63 chr12 7410972 7411385 -136871104 + L2 LINE L2 2521 2955 -359 2058 86 6 48 chr12 7411922 7412236 -136870253 + AluSc SINE Alu 1 301 -8 594 178 30 54 chr12 7412245 7412445 -136870044 - MER112 DNA MER1_type 0 260 1 1270 169 92 18 chr12 7413421 7413587 -136868902 - AluJb SINE Alu -15 297 102 2099 132 0 0 chr12 7413587 7413898 -136868591 - AluSx SINE Alu -1 311 1 1270 169 92 18 chr12 7413898 7414004 -136868485 - AluJb SINE Alu -210 102 5 470 328 64 12 chr12 7414643 7414814 -136867675 - MIR SINE MIR -80 182 3 23 0 0 0 chr12 7416192 7416215 -136866274 + GC_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr12 7416507 7416539 -136865950 + AT_rich Low_complexity Low_complexity 1 32 0 272 246 18 0 chr12 7416675 7416732 -136865757 - L2 LINE L2 -12 3301 3244 294 326 120 11 chr12 7416948 7417132 -136865357 - MIR SINE MIR -40 222 19 1717 157 13 23 chr12 7417402 7417702 -136864787 + AluJb SINE Alu 1 297 -15 1468 85 0 10 chr12 7417714 7417914 -136864575 + AluSq SINE Alu 21 218 -95 1460 148 83 105 chr12 7417916 7418374 -136864115 - LTR7 LTR ERV1 -2 448 1 655 81 0 0 chr12 7418375 7418462 -136864027 + AluSq SINE Alu 215 301 -12 2192 113 0 0 chr12 7418462 7418762 -136863727 + AluSx SINE Alu 1 300 -12 245 163 61 0 chr12 7418772 7418821 -136863668 + Tigger3(Golem) DNA MER2_type 2568 2619 -410 3447 159 36 62 chr12 7418837 7418884 -136863605 + LTR8A LTR ERV1 34 81 -646 1905 129 14 3 chr12 7418884 7419170 -136863319 - AluSx SINE Alu -23 289 1 3447 159 36 62 chr12 7419170 7419834 -136862655 + LTR8A LTR ERV1 81 727 0 1550 115 3 92 chr12 7419834 7419979 -136862510 + Tigger3(Golem) DNA MER2_type 2617 2723 -305 2190 81 10 10 chr12 7419979 7420277 -136862212 - AluSp SINE Alu -15 298 1 1550 115 3 92 chr12 7420277 7420436 -136862053 + Tigger3(Golem) DNA MER2_type 2723 2894 -134 4143 142 63 8 chr12 7420442 7421109 -136861380 + MER72 LTR ERV1 5 708 -14 3755 168 31 0 chr12 7421109 7421805 -136860684 + ERVL-B1 LTR ERVL 627 1390 -4374 592 227 8 0 chr12 7421805 7421937 -136860552 + FLAM_C SINE Alu 1 133 -10 1977 98 9 60 chr12 7421945 7422262 -136860227 + AluSx SINE Alu 1 301 -11 1838 133 20 25 chr12 7422278 7422625 -136859864 - MER4A LTR ERV1 0 664 261 618 84 53 21 chr12 7422625 7422720 -136859769 - MER4A LTR ERV1 -566 98 1 2050 123 17 0 chr12 7422729 7423031 -136859458 - AluSx SINE Alu -5 307 1 2237 64 3 0 chr12 7423045 7423363 -136859126 - AluY SINE Alu 0 319 1 6840 93 64 14 chr12 7423363 7424457 -136858032 - MER4-int LTR ERV1 -1283 5315 4167 2161 104 7 0 chr12 7424472 7424769 -136857720 - AluSp SINE Alu -14 299 1 1332 144 0 111 chr12 7424773 7424886 -136857603 + ERVL-B1 LTR ERVL 2583 2650 -3114 1422 138 8 175 chr12 7424886 7425241 -136857248 - AluJb SINE Alu -16 296 1 1332 144 0 111 chr12 7425241 7425397 -136857092 + ERVL-B1 LTR ERVL 2650 2822 -2942 3352 151 14 35 chr12 7425442 7425469 -136857020 + ERVL-B1 LTR ERVL 2796 2822 -2942 2241 79 3 0 chr12 7425469 7425761 -136856728 - AluSg SINE Alu -17 293 1 3352 151 14 35 chr12 7425761 7426269 -136856220 + ERVL-B1 LTR ERVL 2822 3321 -2443 1741 148 0 59 chr12 7426269 7426593 -136855896 - AluJb SINE Alu -7 305 1 3352 151 14 35 chr12 7426593 7426619 -136855870 + ERVL-B1 LTR ERVL 3321 3346 -2418 2233 62 0 34 chr12 7426624 7426956 -136855533 - AluY SINE Alu 0 322 1 1667 143 0 26 chr12 7426995 7427228 -136855261 + ERVL-B1 LTR ERVL 3334 3561 -2203 2420 60 3 0 chr12 7427228 7427528 -136854961 + AluSp SINE Alu 1 301 -12 1667 143 0 26 chr12 7427528 7427559 -136854930 + ERVL-B1 LTR ERVL 3561 3591 -2173 8066 177 65 18 chr12 7427560 7429160 -136853329 - MER52A LTR ERV1 0 1755 1 1058 165 110 0 chr12 7429160 7429360 -136853129 + ERVL-B1 LTR ERVL 3589 3810 -1954 22 0 0 0 chr12 7429360 7429382 -136853107 + AT_rich Low_complexity Low_complexity 1 22 0 1925 164 6 3 chr12 7429826 7430138 -136852351 - LTR26 LTR ERV1 0 603 291 240 103 179 0 chr12 7430211 7430250 -136852239 - LTR26 LTR ERV1 -269 334 289 244 139 23 0 chr12 7430266 7430309 -136852180 - LTR26 LTR ERV1 -269 334 291 226 67 0 0 chr12 7430417 7430447 -136852042 - LTR26 LTR ERV1 -283 320 291 232 67 0 0 chr12 7430747 7430777 -136851712 - LTR26 LTR ERV1 -283 320 291 396 154 0 110 chr12 7430911 7431002 -136851487 - LTR26 LTR ERV1 -283 320 240 827 170 0 27 chr12 7431003 7431150 -136851339 - FLAM_C SINE Alu 0 143 1 1295 142 50 0 chr12 7431150 7431368 -136851121 - LTR26 LTR ERV1 -355 248 20 465 206 28 0 chr12 7431369 7431476 -136851013 - FLAM_A SINE Alu -21 121 12 11415 149 18 43 chr12 7431485 7433092 -136849397 + ERVL-B1 LTR ERVL 3794 5408 -356 263 152 0 106 chr12 7433092 7433158 -136849331 - AluJb SINE Alu -166 136 78 11415 149 18 43 chr12 7433158 7433500 -136848989 + ERVL-B1 LTR ERVL 5408 5757 -7 1423 242 85 0 chr12 7433500 7433830 -136848659 + MLT2B1 LTR ERVL 1 358 -162 1081 87 12 17 chr12 7433842 7434014 -136848475 + HSMAR2 DNA Mariner 1 171 -1131 3762 153 24 128 chr12 7434561 7436098 -136846391 + pTR5 LTR ERV1 743 2606 0 714 236 21 37 chr12 7436938 7437179 -136845310 - L1M4 LINE L1 -868 5278 5042 1525 158 12 67 chr12 7437192 7437363 -136845126 - AluSq SINE Alu -1 312 166 2093 50 0 8 chr12 7437363 7437625 -136844864 - AluY SINE Alu -51 260 1 1525 158 12 67 chr12 7437625 7437783 -136844706 - AluSq SINE Alu -147 166 1 415 289 73 113 chr12 7439126 7439262 -136843227 - HAL1b LINE L1 -993 355 215 198 91 0 0 chr12 7439262 7439295 -136843194 + (TA)n Simple_repeat Simple_repeat 2 34 0 2175 101 0 0 chr12 7439296 7439583 -136842906 - AluSx SINE Alu -21 291 5 415 289 73 113 chr12 7439583 7439814 -136842675 - HAL1b LINE L1 -1132 216 1 3747 175 20 1 chr12 7439997 7440482 -136842007 - L1MC3 LINE L1 0 7785 7282 2017 121 0 19 chr12 7440482 7440796 -136841693 - AluSg SINE Alu -2 308 1 3747 175 20 1 chr12 7440796 7441007 -136841482 - L1MC3 LINE L1 -503 7282 7076 233 200 0 0 chr12 7442056 7442096 -136840393 - Charlie8 DNA MER1_type -1009 1408 1369 272 200 31 0 chr12 7442173 7442238 -136840251 - Charlie8 DNA MER1_type -1922 495 429 2384 77 0 0 chr12 7442238 7442537 -136839952 - AluSx SINE Alu -13 299 1 2418 165 44 2 chr12 7442538 7442945 -136839544 - MSTB LTR MaLR -2 424 1 1114 103 33 27 chr12 7442945 7443129 -136839360 + L1PA16 LINE L1 5981 6165 -1 435 270 56 8 chr12 7443486 7443612 -136838877 + L2 LINE L2 3141 3272 0 718 228 220 20 chr12 7444084 7444334 -136838155 + MLT1J1 LTR MaLR 1 300 -146 706 177 0 15 chr12 7444405 7444535 -136837954 + FLAM_C SINE Alu 4 131 -2 608 245 211 56 chr12 7444947 7445270 -136837219 - MLT1G LTR MaLR -10 585 213 240 111 0 0 chr12 7445282 7445318 -136837171 + (TTCCC)n Simple_repeat Simple_repeat 2 37 0 2011 102 14 0 chr12 7445318 7445601 -136836888 - AluY SINE Alu -4 307 21 1078 104 7 7 chr12 7445602 7445756 -136836733 - AluSq SINE Alu -159 154 1 222 91 0 0 chr12 7445777 7445810 -136836679 + (TCTCC)n Simple_repeat Simple_repeat 5 37 0 659 201 32 39 chr12 7445831 7445985 -136836504 - MLT1G LTR MaLR -420 170 18 2352 58 0 16 chr12 7445985 7446295 -136836194 - AluY SINE Alu -6 305 1 19414 174 34 15 chr12 7446303 7446793 -136835696 - L1PA13 LINE L1 -1 6865 6386 1974 108 7 3 chr12 7446793 7447088 -136835401 - AluSq SINE Alu -17 296 1 19414 174 34 15 chr12 7447088 7447214 -136835275 - L1PA13 LINE L1 -480 6386 6264 1718 157 3 23 chr12 7447214 7447519 -136834970 - AluSx SINE Alu -13 299 1 19414 174 34 15 chr12 7447519 7451134 -136831355 - L1PA13 LINE L1 -602 6264 2720 2625 42 0 0 chr12 7451134 7451445 -136831044 + AluY SINE Alu 1 311 0 19414 174 34 15 chr12 7451445 7451946 -136830543 - L1PA13 LINE L1 -4146 2720 2230 1882 167 3 0 chr12 7451946 7452257 -136830232 - AluSx SINE Alu 0 312 1 19414 174 34 15 chr12 7452257 7452570 -136829919 - L1PA13 LINE L1 -4636 2230 1736 537 152 11 0 chr12 7452682 7452774 -136829715 + L1PA12 LINE L1 103 195 -7386 1767 163 10 0 chr12 7453179 7453468 -136829021 - AluJb SINE Alu -20 292 1 1795 159 0 23 chr12 7454162 7454470 -136828019 - AluJo SINE Alu -11 301 1 1463 137 60 12 chr12 7454496 7454745 -136827744 - AluJo SINE Alu -50 262 2 568 237 30 106 chr12 7454989 7455187 -136827302 - MIR SINE MIR -13 249 67 815 255 102 91 chr12 7455255 7455635 -136826854 - LTR67 LTR ERVL 0 557 168 2415 155 73 140 chr12 7455635 7456414 -136826075 + LTR8A LTR ERV1 1 727 0 815 255 102 91 chr12 7456414 7456562 -136825927 - LTR67 LTR ERVL -389 168 23 264 354 19 21 chr12 7456698 7456954 -136825535 - MIR SINE MIR -19 243 23 289 196 36 0 chr12 7457018 7457074 -136825415 + MER46C DNA MER2_type 6 63 -275 851 146 95 0 chr12 7457077 7457235 -136825254 - AluJb SINE Alu -22 290 118 764 222 73 69 chr12 7457237 7457512 -136824977 + MER46C DNA MER2_type 58 333 -5 1800 144 3 7 chr12 7459306 7459605 -136822884 + AluJo SINE Alu 1 298 -14 384 299 94 35 chr12 7460599 7460800 -136821689 - MIR SINE MIR -1 261 49 1639 152 0 31 chr12 7461061 7461350 -136821139 + AluSx SINE Alu 1 280 -32 21 36 0 0 chr12 7461828 7461856 -136820633 + AT_rich Low_complexity Low_complexity 1 28 0 999 159 75 31 chr12 7461862 7462089 -136820400 - L1PB2 LINE L1 0 6151 5915 1530 184 0 46 chr12 7462683 7462988 -136819501 - AluJo SINE Alu -21 291 1 604 183 7 58 chr12 7463367 7463504 -136818985 + FLAM_A SINE Alu 2 131 -2 236 333 35 0 chr12 7465281 7465368 -136817121 - L3 LINE CR1 -27 1550 1461 396 296 99 29 chr12 7466345 7466517 -136815972 - MIR SINE MIR -57 205 22 321 118 0 0 chr12 7468601 7468652 -136813837 + (A)n Simple_repeat Simple_repeat 1 51 0 1135 143 5 21 chr12 7468675 7468864 -136813625 + AluJo SINE Alu 12 197 -115 395 279 43 57 chr12 7668932 7669072 -136613417 + L2 LINE L2 3176 3313 0 465 224 52 9 chr12 7669438 7669554 -136612935 - MLT1I LTR MaLR 0 409 289 299 230 14 14 chr12 7669630 7669704 -136612785 - MLT1J2 LTR MaLR -277 173 100 2158 95 95 104 chr12 7669735 7670167 -136612322 + MSTA LTR MaLR 1 428 0 328 62 31 47 chr12 7670240 7670304 -136612185 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 780 255 0 0 chr12 7670323 7670480 -136612009 - AluJb SINE Alu -20 292 136 342 310 64 32 chr12 7670620 7670807 -136611682 + MIR SINE MIR 65 257 -5 2111 124 0 0 chr12 7671177 7671459 -136611030 - AluSx SINE Alu -2 310 29 814 212 18 12 chr12 7671472 7671642 -136610847 + MER5B DNA MER1_type 8 178 0 1160 284 167 7 chr12 7671644 7672080 -136610409 + L2 LINE L2 2804 3309 -4 449 263 127 0 chr12 7672447 7672565 -136609924 + MIR SINE MIR 28 160 -102 216 335 82 6 chr12 7672751 7672909 -136609580 + L2 LINE L2 1555 1724 -1590 1298 177 9 0 chr12 7672954 7673180 -136609309 - AluJo SINE Alu 0 312 85 776 348 71 40 chr12 7673186 7673767 -136608722 + L2 LINE L2 1774 2372 -942 431 295 8 8 chr12 7673772 7673894 -136608595 + L2 LINE L2 3191 3312 -1 364 273 84 35 chr12 7674088 7674231 -136608258 + MIR SINE MIR 105 254 -8 282 271 124 40 chr12 7674510 7674674 -136607815 - MIR SINE MIR -56 206 30 403 256 176 47 chr12 7675286 7675643 -136606846 - L1MC5 LINE L1 -144 7898 7522 266 256 49 0 chr12 7675691 7675773 -136606716 + L1ME LINE L1 5510 5595 -526 516 279 294 0 chr12 7675804 7676120 -136606369 - L1MC4 LINE L1 -548 7494 7086 42445 41 5 1 chr12 7676215 7682347 -136600142 - L1PA2 LINE L1 0 6155 4 1070 252 39 19 chr12 7682358 7682703 -136599786 - L1MC4 LINE L1 -884 6924 6565 36 0 0 0 chr12 7682703 7682739 -136599750 + AT_rich Low_complexity Low_complexity 1 36 0 432 249 73 4 chr12 7682739 7682910 -136599579 - L1MC4 LINE L1 -784 5362 5211 1211 232 61 7 chr12 7683091 7683401 -136599088 - MER46C DNA MER2_type -10 328 2 2474 100 0 0 chr12 7683446 7683755 -136598734 - AluY SINE Alu 0 311 3 3718 86 125 4 chr12 7684027 7684571 -136597918 - LTR66 LTR ERVL 0 610 1 1729 181 0 14 chr12 7684744 7685050 -136597439 - AluJb SINE Alu 0 312 12 2014 141 0 3 chr12 7685155 7685487 -136597002 - AluSx SINE Alu 0 331 1 2092 115 0 44 chr12 7686081 7686278 -136596211 - AluSx SINE Alu 0 321 141 2505 89 0 3 chr12 7686278 7686591 -136595898 - AluSp SINE Alu -1 312 1 2092 115 0 44 chr12 7686591 7686727 -136595762 - AluSx SINE Alu -180 141 1 621 88 0 0 chr12 7686727 7686818 -136595671 + MER2 DNA MER2_type 120 210 -135 21 0 0 0 chr12 7686841 7686862 -136595627 + AT_rich Low_complexity Low_complexity 1 21 0 452 321 82 25 chr12 7686939 7687257 -136595232 - L2 LINE L2 -1016 2298 1963 200 286 14 54 chr12 7690684 7690831 -136591658 + GA-rich Low_complexity Low_complexity 5 145 0 631 284 68 16 chr12 7693238 7693428 -136589061 + MIR SINE MIR 51 250 -12 297 225 28 0 chr12 7696410 7696481 -136586008 + MIR SINE MIR 43 115 -93 360 0 0 0 chr12 7697024 7697064 -136585425 + (TG)n Simple_repeat Simple_repeat 1 40 0 243 0 0 0 chr12 7697063 7697090 -136585399 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 237 319 118 21 chr12 7697368 7697512 -136584977 + L2 LINE L2 2328 2485 -829 315 0 0 0 chr12 7697526 7697561 -136584928 + (CA)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chr12 7697561 7697585 -136584904 + (CCA)n Simple_repeat Simple_repeat 3 26 0 801 240 112 0 chr12 7697617 7697859 -136584630 + MER33 DNA MER1_type 1 269 -55 294 314 95 45 chr12 7697871 7697993 -136584496 + L2 LINE L2 2511 2626 -688 859 143 8 15 chr12 7697993 7698126 -136584363 - FLAM_C SINE Alu 0 133 2 294 314 95 45 chr12 7698126 7698245 -136584244 + L2 LINE L2 2626 2764 -550 2041 152 0 0 chr12 7698871 7699173 -136583316 + AluSx SINE Alu 1 302 -10 273 98 0 0 chr12 7701959 7702000 -136580489 + (CA)n Simple_repeat Simple_repeat 1 41 0 2274 111 0 7 chr12 7703020 7703326 -136579163 - AluSx SINE Alu 0 312 9 261 139 0 0 chr12 7705139 7705182 -136577307 + (TTC)n Simple_repeat Simple_repeat 3 45 0 687 115 0 0 chr12 7705197 7705293 -136577196 - U6 snRNA snRNA -10 97 2 192 308 0 0 chr12 7705646 7705698 -136576791 + MIR SINE MIR 79 130 -132 2017 211 84 16 chr12 7706688 7707190 -136575299 + MLT1F LTR MaLR 1 536 -6 2239 127 102 13 chr12 7708001 7708394 -136574095 + MSTA LTR MaLR 1 428 0 314 360 131 0 chr12 7708884 7709059 -136573430 - L2 LINE L2 -50 3222 3025 541 226 0 9 chr12 7709148 7709263 -136573226 - MIR SINE MIR -110 152 39 775 216 119 10 chr12 7709284 7709478 -136573011 - MER20 DNA MER1_type -4 215 1 834 292 20 20 chr12 7709523 7709773 -136572716 - MIR SINE MIR -11 251 2 215 329 68 44 chr12 7709822 7710071 -136572418 - L2 LINE L2 -401 2913 2659 457 225 17 67 chr12 7711153 7711273 -136571216 - MER81 DNA DNA 0 114 1 553 178 0 9 chr12 7711387 7711494 -136570995 - Charlie1 DNA MER1_type -33 2728 2623 * 822 219 47 21 chr12 7711481 7711714 -136570775 - Charlie1 DNA MER1_type -2522 239 1 486 288 92 27 chr12 7711714 7711826 -136570663 - L1MEc LINE L1 -4332 2389 2286 2857 143 106 33 chr12 7711826 7712190 -136570299 - MER1A DNA MER1_type -2173 527 116 207 0 0 0 chr12 7712190 7712213 -136570276 + (CTG)n Simple_repeat Simple_repeat 1 23 0 2857 143 106 33 chr12 7712213 7712339 -136570150 - MER1A DNA MER1_type -2584 116 1 486 288 92 27 chr12 7712339 7712521 -136569968 - L1MEc LINE L1 -4435 2286 2076 880 197 0 0 chr12 7712522 7712669 -136569820 - AluJb SINE Alu -27 285 139 719 230 104 49 chr12 7712672 7713001 -136569488 - L1MEc LINE L1 -4529 2011 1682 609 212 9 0 chr12 7713392 7713505 -136568984 - MER81 DNA DNA 0 114 1 24 0 0 0 chr12 7715077 7715101 -136567388 + GC_rich Low_complexity Low_complexity 1 24 0 247 314 88 25 chr12 7716212 7716371 -136566118 + MIR SINE MIR 30 198 -64 243 0 0 0 chr12 7716615 7716642 -136565847 + (A)n Simple_repeat Simple_repeat 1 27 0 1765 296 80 38 chr12 7716828 7717414 -136565075 - L2 LINE L2 -2 3311 2751 2324 84 11 0 chr12 7717414 7717729 -136564760 - AluSc SINE Alu 0 318 1 1765 296 80 38 chr12 7717729 7718311 -136564178 - L2 LINE L2 -562 2751 2091 1541 169 28 0 chr12 7718438 7718692 -136563797 + AluJo SINE Alu 22 282 -30 270 301 0 46 chr12 7720342 7720495 -136561994 + CT-rich Low_complexity Low_complexity 5 150 0 183 80 0 0 chr12 7720496 7720521 -136561968 + (T)n Simple_repeat Simple_repeat 1 25 0 275 319 11 0 chr12 7720532 7720626 -136561863 + CT-rich Low_complexity Low_complexity 1 95 0 401 285 40 75 chr12 7721133 7721333 -136561156 - MIR3 SINE MIR -7 201 9 193 312 21 54 chr12 7721375 7721468 -136561021 + MIR3 SINE MIR 12 101 -107 714 189 137 16 chr12 7721547 7721737 -136560752 + MER58A DNA MER1_type 3 215 -9 2417 72 16 20 chr12 7721738 7722042 -136560447 + AluSg SINE Alu 1 303 -7 309 314 110 8 chr12 7722223 7722341 -136560148 + MIR SINE MIR 133 262 0 255 152 0 0 chr12 7723133 7723179 -136559310 + (TG)n Simple_repeat Simple_repeat 2 47 0 543 381 77 21 chr12 7723339 7723946 -136558543 + L2 LINE L2 2140 2780 -534 722 113 0 0 chr12 7723949 7724046 -136558443 + AluJ/FLAM SINE Alu 2 98 -214 1151 137 0 0 chr12 7724054 7724215 -136558274 + FRAM SINE Alu 15 175 -1 683 258 85 29 chr12 7724818 7725148 -136557341 + L1ME LINE L1 5278 5629 -492 327 222 133 22 chr12 7725206 7725341 -136557148 - L1MC4 LINE L1 -1 8041 7892 4694 231 88 55 chr12 7725483 7727727 -136554762 - L1ME2 LINE L1 -10 6154 3806 2260 94 33 0 chr12 7727727 7728026 -136554463 - AluSc SINE Alu 0 309 1 4694 231 88 55 chr12 7728026 7728524 -136553965 - L1ME2 LINE L1 -2358 3806 3326 2056 112 4 4 chr12 7728529 7728797 -136553692 + AluSp SINE Alu 14 281 -32 531 0 0 0 chr12 7728799 7728858 -136553631 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 305 286 77 11 chr12 7732060 7732151 -136550338 - L2 LINE L2 -14 3258 3162 365 219 134 63 chr12 7732364 7732416 -136550073 - L1ME4a LINE L1 -33 6088 6041 2098 145 10 3 chr12 7732416 7732726 -136549763 + AluJb SINE Alu 1 312 0 365 219 134 63 chr12 7732726 7732911 -136549578 - L1ME4a LINE L1 -80 6041 5834 766 275 45 38 chr12 7732914 7733201 -136549288 + MARNA DNA Mariner 129 417 -169 955 240 33 8 chr12 7733294 7733536 -136548953 - MIR SINE MIR 0 262 15 198 0 0 0 chr12 7733730 7733752 -136548737 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1643 175 41 0 chr12 7733816 7734085 -136548404 - AluJo SINE Alu -30 282 3 416 246 173 11 chr12 7735238 7735373 -136547116 + MER5B DNA MER1_type 17 188 -1 192 40 0 0 chr12 7739064 7739089 -136543400 + (CTGGGG)n Simple_repeat Simple_repeat 2 26 0 249 33 0 0 chr12 7739458 7739488 -136543001 + (TG)n Simple_repeat Simple_repeat 1 30 0 354 336 153 23 chr12 7740439 7740877 -136541612 + L2 LINE L2 2181 2675 -639 342 260 55 0 chr12 7740880 7741015 -136541474 + (CCTG)n Simple_repeat Simple_repeat 1 142 0 444 274 246 28 chr12 7741205 7741563 -136540926 + L2 LINE L2 2827 3262 -10 247 235 204 15 chr12 7744346 7744478 -136538011 + MIR SINE MIR 18 174 -88 189 291 0 18 chr12 7744680 7744735 -136537754 + MIR SINE MIR 1 54 -208 1211 117 0 0 chr12 7744881 7745043 -136537446 - AluSp SINE Alu -18 295 134 2251 87 20 7 chr12 7745044 7745342 -136537147 - AluY SINE Alu -9 302 1 200 100 25 0 chr12 7746371 7746411 -136536078 + (CA)n Simple_repeat Simple_repeat 1 41 0 221 0 35 0 chr12 7746411 7746440 -136536049 + (CAG)n Simple_repeat Simple_repeat 1 30 0 607 173 7 65 chr12 7747601 7747740 -136534749 + FLAM_A SINE Alu 11 141 -1 41 66 0 0 chr12 7747763 7747839 -136534650 + AT_rich Low_complexity Low_complexity 1 76 0 2005 155 0 3 chr12 7747889 7748186 -136534303 + AluJo SINE Alu 1 296 -16 4462 256 102 52 chr12 7748196 7748604 -136533885 - HAL1 LINE L1 -56 2451 2065 216 0 0 0 chr12 7748604 7748628 -136533861 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4462 256 102 52 chr12 7748628 7749789 -136532700 - HAL1 LINE L1 -442 2065 963 2301 97 3 10 chr12 7749789 7750089 -136532400 + AluSx SINE Alu 1 298 -14 4462 256 102 52 chr12 7750089 7750390 -136532099 - HAL1 LINE L1 -1544 963 678 3342 171 36 3 chr12 7750390 7750976 -136531513 - MER6A DNA MER2_type 0 605 1 4462 256 102 52 chr12 7750976 7751433 -136531056 - HAL1 LINE L1 -1829 678 6 467 219 67 0 chr12 7751667 7751772 -136530717 + L2 LINE L2 3161 3272 0 320 287 74 25 chr12 7751924 7752046 -136530443 - MIR SINE MIR -65 143 16 205 228 53 18 chr12 7752484 7752541 -136529948 - L2 LINE L2 -536 2778 2720 350 342 0 27 chr12 7752852 7752963 -136529526 - L2 LINE L2 -17 3255 3148 481 269 45 0 chr12 7753605 7753761 -136528728 - Charlie8 DNA MER1_type -2159 258 96 1314 146 10 5 chr12 7753789 7753994 -136528495 + AluJo SINE Alu 1 206 -106 632 130 19 9 chr12 7754107 7754215 -136528274 - AluSq/x SINE Alu -203 110 2 757 310 98 9 chr12 7754218 7754566 -136527923 - L1MC/D LINE L1 -1984 5824 5446 263 280 67 0 chr12 7754598 7754673 -136527816 - Charlie8 DNA MER1_type -2331 86 7 2155 97 0 94 chr12 7755473 7755814 -136526675 - AluSq SINE Alu -4 309 1 2695 171 88 3 chr12 7755814 7756382 -136526107 - L1MB7 LINE L1 -47 6137 5522 2564 48 0 13 chr12 7756428 7756742 -136525747 - AluY SINE Alu -1 310 1 2119 90 13 13 chr12 7757146 7757445 -136525044 + AluSq SINE Alu 1 299 -14 495 267 47 20 chr12 7758866 7759016 -136523473 - MIR SINE MIR -44 218 65 2269 89 0 14 chr12 7759316 7759609 -136522880 + AluSc SINE Alu 1 289 -20 671 227 0 0 chr12 7759854 7759973 -136522516 + FLAM_A SINE Alu 3 121 -12 213 231 0 0 chr12 7760159 7760211 -136522278 + (TA)n Simple_repeat Simple_repeat 2 53 0 180 0 0 0 chr12 7760724 7760744 -136521745 + (CA)n Simple_repeat Simple_repeat 1 20 0 188 300 54 54 chr12 7760974 7761104 -136521385 + L2 LINE L2 3125 3254 -18 507 278 86 15 chr12 7761244 7761442 -136521047 - L1ME LINE L1 -492 5629 5418 221 138 0 0 chr12 7761488 7761517 -136520972 + (T)n Simple_repeat Simple_repeat 1 29 0 1200 180 38 70 chr12 7762570 7762625 -136519864 - MLT1A1 LTR MaLR 0 365 310 3645 146 4 2 chr12 7762625 7763151 -136519338 + MER1A DNA MER1_type 1 527 0 1200 180 38 70 chr12 7763151 7763411 -136519078 - MLT1A1 LTR MaLR -55 310 60 356 117 17 0 chr12 7763405 7763465 -136519024 + MADE1 DNA Mariner 20 80 0 * 460 110 0 85 chr12 7763465 7763542 -136518947 - MLT1A1 LTR MaLR -304 70 1 25 0 0 0 chr12 7764189 7764214 -136518275 + AT_rich Low_complexity Low_complexity 1 25 0 1395 151 41 50 chr12 7764384 7764527 -136517962 - MER66-int LTR ERV1 -2482 4194 4051 1882 116 0 28 chr12 7764527 7764812 -136517677 - AluSx SINE Alu 0 312 36 1395 151 41 50 chr12 7764812 7764986 -136517503 - MER66-int LTR ERV1 -2625 4051 3880 * 5329 165 29 11 chr12 7764969 7766430 -136516059 + MER66-int LTR ERV1 647 2169 -4507 2797 169 74 16 chr12 7766418 7766986 -136515503 + MER66-int LTR ERV1 2336 2936 -3740 * 5015 223 48 28 chr12 7767241 7767982 -136514507 + MER66-int LTR ERV1 2780 3561 -3115 3946 91 0 8 chr12 7767982 7768497 -136513992 - MER9 LTR ERVK 0 511 1 5015 223 48 28 chr12 7768497 7769094 -136513395 + MER66-int LTR ERV1 3561 4145 -2531 1050 168 19 0 chr12 7769128 7769289 -136513200 - FRAM SINE Alu -11 165 2 336 246 36 87 chr12 7769527 7769665 -136512824 + HAL1b LINE L1 652 782 -566 2938 139 60 24 chr12 7769958 7770492 -136511997 - L1MC/D LINE L1 -537 5807 5255 2282 146 0 36 chr12 7770497 7770909 -136511580 - L1MC2 LINE L1 -123 6221 5825 447 152 0 0 chr12 7770913 7770992 -136511497 + CT-rich Low_complexity Low_complexity 4 82 0 719 135 75 23 chr12 7770995 7771128 -136511361 + MER74A LTR ERVL 419 558 0 334 230 46 23 chr12 7771132 7771219 -136511270 - L2 LINE L2 -32 3281 3193 6043 137 54 7 chr12 7772172 7773276 -136509213 - L1MC1 LINE L1 0 6333 5181 181 245 82 51 chr12 7773618 7773716 -136508773 - MIR3 SINE MIR -9 199 99 1205 196 68 0 chr12 7773796 7774062 -136508427 - L1MDa LINE L1 -4368 2172 1889 381 220 11 11 chr12 7774065 7774156 -136508333 + MLT1D LTR MaLR 9 99 -406 544 197 0 8 chr12 7774166 7774288 -136508201 - L1M4 LINE L1 -825 5321 5201 255 170 0 0 chr12 7774288 7774335 -136508154 - MLT1D LTR MaLR -9 496 450 1101 213 32 29 chr12 7774413 7774690 -136507799 + MLT1D LTR MaLR 111 388 -117 2625 188 9 0 chr12 7774703 7775167 -136507322 - L1MDa LINE L1 -6052 488 21 477 0 0 0 chr12 7775178 7775231 -136507258 + (CA)n Simple_repeat Simple_repeat 2 54 0 1832 122 42 96 chr12 7775459 7775793 -136506696 + MLT1A1 LTR MaLR 1 313 -52 2263 108 10 0 chr12 7775793 7776098 -136506391 - AluSx SINE Alu 0 312 5 1832 122 42 96 chr12 7776098 7776149 -136506340 + MLT1A1 LTR MaLR 313 365 0 1057 153 99 132 chr12 7776602 7776953 -136505536 - MSTD LTR MaLR 0 396 1 2416 103 0 3 chr12 7777012 7777322 -136505167 + AluSp SINE Alu 1 309 -4 1941 136 7 33 chr12 7777401 7777702 -136504787 + AluSx SINE Alu 1 293 -19 3312 138 46 4 chr12 7778044 7778546 -136503943 + LTR17 LTR ERV1 256 778 -2 4995 94 9 29 chr12 7778548 7779249 -136503240 + HERV17 LTR ERV1 2 688 -7938 9578 61 4 5 chr12 7779706 7780870 -136501619 + HERV17 LTR ERV1 1535 2697 -5929 11747 63 11 22 chr12 7781006 7782506 -136499983 + HERV17 LTR ERV1 3096 4578 -4048 589 28 0 0 chr12 7782494 7782565 -136499924 + HERV17 LTR ERV1 7478 7548 -1078 * 2310 59 21 3 chr12 7782555 7782842 -136499647 + HERV17 LTR ERV1 8335 8626 0 2421 94 0 9 chr12 7782842 7783171 -136499318 + LTR17 LTR ERV1 1 326 -454 183 80 0 0 chr12 7783171 7783196 -136499293 + (GAAAA)n Simple_repeat Simple_repeat 3 27 0 274 196 0 0 chr12 7783395 7783446 -136499043 + MIR SINE MIR 3 53 -209 1394 175 36 62 chr12 7783464 7783519 -136498970 + MER58B DNA MER1_type 37 92 -2328 1911 144 18 0 chr12 7783519 7783804 -136498685 + AluSx SINE Alu 1 290 -22 1394 175 36 62 chr12 7783804 7784057 -136498432 + MER58B DNA MER1_type 92 337 -4 889 203 43 0 chr12 7784060 7784247 -136498242 + MIR SINE MIR 46 240 -22 29 0 0 0 chr12 7784301 7784330 -136498159 + AT_rich Low_complexity Low_complexity 1 29 0 266 314 116 0 chr12 7784622 7784743 -136497746 + MIR SINE MIR 128 262 0 214 220 51 0 chr12 7785925 7785984 -136496505 - MIR SINE MIR -62 146 85 204 274 12 24 chr12 7786462 7786546 -136495943 + G-rich Low_complexity Low_complexity 1 83 0 195 161 0 0 chr12 7787420 7787451 -136495038 - MIR SINE MIR -65 143 113 604 307 35 8 chr12 7788780 7789034 -136493455 - MIR SINE MIR -1 261 1 381 313 73 28 chr12 7789688 7789867 -136492622 - MIR SINE MIR -45 217 31 2068 128 20 0 chr12 7789868 7790166 -136492323 - AluSx SINE Alu -8 304 1 1204 220 32 16 chr12 7790902 7791211 -136491278 - L1MD2 LINE L1 -1 6358 6024 423 392 0 0 chr12 7791591 7791739 -136490750 - MIR SINE MIR -107 155 8 197 167 60 30 chr12 7792647 7792815 -136489674 + (TTATA)n Simple_repeat Simple_repeat 5 177 0 344 162 45 45 chr12 7792830 7793066 -136489423 + (TA)n Simple_repeat Simple_repeat 1 236 0 300 149 21 129 chr12 7793071 7793265 -136489224 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 253 170 16 129 chr12 7793279 7793473 -136489016 + (TATAA)n Simple_repeat Simple_repeat 5 176 0 * 259 222 62 25 chr12 7793425 7793587 -136488902 + (CATATA)n Simple_repeat Simple_repeat 3 170 0 * 391 150 39 61 chr12 7793499 7793679 -136488810 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 232 184 67 21 chr12 7793696 7793986 -136488503 + (TATAA)n Simple_repeat Simple_repeat 1 303 0 6965 50 13 52 chr12 7795077 7796770 -136485719 - SVA Other Other -683 1384 34 252 0 0 0 chr12 7796774 7796802 -136485687 + (GGGAGA)n Simple_repeat Simple_repeat 6 33 0 524 224 86 9 chr12 7796871 7796987 -136485502 + FLAM_A SINE Alu 4 128 -14 492 242 22 11 chr12 7797026 7797204 -136485285 + (CATA)n Simple_repeat Simple_repeat 1 180 0 2098 122 3 7 chr12 7798745 7799039 -136483450 + AluSp SINE Alu 1 293 -20 378 61 0 0 chr12 7799052 7799101 -136483388 + (CACTG)n Simple_repeat Simple_repeat 4 52 0 388 293 26 17 chr12 7799101 7799217 -136483272 + MER5A DNA MER1_type 73 189 0 1186 214 69 33 chr12 7800704 7801007 -136481482 + L1 LINE L1 4788 5101 -1045 1604 164 96 3 chr12 7802030 7802342 -136480147 + MER58B DNA MER1_type 1 341 0 740 183 0 30 chr12 7805109 7805240 -136477249 + FLAM_A SINE Alu 1 127 -6 2332 107 3 0 chr12 7807826 7808135 -136474354 - AluSp SINE Alu -3 310 1 635 168 35 0 chr12 7808179 7808292 -136474197 - FLAM_C SINE Alu -25 118 2 224 24 0 95 chr12 7808335 7808377 -136474112 + (A)n Simple_repeat Simple_repeat 1 38 0 2334 82 74 10 chr12 7808674 7809077 -136473412 + L1PA3 LINE L1 5724 6152 -3 5165 133 37 2 chr12 7809435 7810254 -136472235 + L1PA16 LINE L1 5320 6166 0 37 39 0 0 chr12 7810275 7810326 -136472163 + AT_rich Low_complexity Low_complexity 1 51 0 2437 75 0 0 chr12 7810326 7810618 -136471871 - AluSq SINE Alu -21 292 1 551 240 141 32 chr12 7811617 7811959 -136470530 - MLT1F LTR MaLR 0 542 100 396 173 0 91 chr12 7812390 7812500 -136469989 - MLT1F LTR MaLR -409 140 41 3127 107 22 6 chr12 7813404 7813892 -136468597 - L1MA3 LINE L1 0 6305 5810 469 302 107 13 chr12 7814290 7814515 -136467974 + MIR SINE MIR 17 262 0 1706 289 59 12 chr12 7814553 7815116 -136467373 + ERVL LTR ERVL 3576 4164 -1600 * 2043 294 23 14 chr12 7815109 7815759 -136466730 + ERVL LTR ERVL 4338 4993 -771 2167 104 0 10 chr12 7816583 7816872 -136465617 - AluSq SINE Alu -27 286 1 1111 240 20 20 chr12 7817127 7817373 -136465116 + MER69 DNA AcHobo 1 246 -980 428 214 45 0 chr12 7817368 7817457 -136465032 + MER69 DNA AcHobo 2434 2526 0 * 1965 122 11 7 chr12 7817601 7817887 -136464602 - AluSx SINE Alu -25 287 1 726 267 35 70 chr12 7818412 7818727 -136463762 - MLT1I LTR MaLR 0 409 106 327 333 82 6 chr12 7819051 7819210 -136463279 - L2 LINE L2 0 3313 3143 201 278 66 93 chr12 7819391 7819542 -136462947 - MIR SINE MIR -114 148 2 241 26 53 0 chr12 7819913 7819951 -136462538 + (TTA)n Simple_repeat Simple_repeat 3 42 0 8096 25 8 3 chr12 7819951 7821674 -136460815 - L1PA5 LINE L1 -18 6136 4405 809 149 0 0 chr12 7822724 7822845 -136459644 + FLAM_C SINE Alu 1 121 -12 5976 66 1 0 chr12 7823779 7824595 -136457894 - L1P LINE L1 -881 5265 4449 727 376 112 24 chr12 7824599 7825047 -136457442 - L2 LINE L2 -1922 1392 985 1180 217 151 30 chr12 7825047 7825219 -136457270 - MLT1A2 LTR MaLR 0 374 224 1341 224 3 33 chr12 7825219 7825522 -136456967 - AluJo SINE Alu -17 295 2 1180 217 151 30 chr12 7825522 7825681 -136456808 - MLT1A2 LTR MaLR -150 224 3 727 376 112 24 chr12 7825681 7826297 -136456192 - L2 LINE L2 -2329 985 235 258 261 0 0 chr12 7827410 7827475 -136455014 - MLT1K LTR MaLR 0 588 524 773 162 8 0 chr12 7828114 7828231 -136454258 + FLAM_C SINE Alu 1 118 -15 21 0 0 0 chr12 7828236 7828257 -136454232 + AT_rich Low_complexity Low_complexity 1 21 0 323 329 138 0 chr12 7828311 7828478 -136454011 - L2 LINE L2 -151 3121 2932 325 265 0 29 chr12 7829082 7829184 -136453305 - L1MC5 LINE L1 -50 7911 7813 1119 216 72 61 chr12 7829216 7829772 -136452717 - L1MC5 LINE L1 -214 7747 7186 363 294 169 22 chr12 7830722 7830953 -136451536 - L1M4 LINE L1 -2196 3950 3686 963 169 71 83 chr12 7831054 7831323 -136451166 + L1 LINE L1 3221 3487 -2659 2183 110 7 13 chr12 7831323 7831633 -136450856 + AluSx SINE Alu 4 311 -1 963 169 71 83 chr12 7831633 7831701 -136450788 + L1 LINE L1 3487 3554 -2592 * 2385 156 13 61 chr12 7831695 7832235 -136450254 + L1 LINE L1 3866 4379 -1767 2008 134 10 0 chr12 7832238 7832530 -136449959 + AluSx SINE Alu 1 295 -17 956 188 33 62 chr12 7832534 7832806 -136449683 + L1MA9 LINE L1 5946 6209 -125 2492 233 34 39 chr12 7832890 7833791 -136448698 + L1M4 LINE L1 3502 4398 -1748 290 293 105 44 chr12 7833810 7834039 -136448450 + MARNA DNA Mariner 254 496 -90 511 280 97 24 chr12 7834364 7834571 -136447918 - MIR SINE MIR -27 235 14 539 262 92 44 chr12 7834983 7835070 -136447419 - L1MC4 LINE L1 -40 8002 7921 2336 100 0 0 chr12 7835070 7835370 -136447119 - AluSx SINE Alu -12 300 1 539 262 92 44 chr12 7835370 7835671 -136446818 - L1MC4 LINE L1 -121 7921 7595 1725 171 3 26 chr12 7835853 7836162 -136446327 + AluJb SINE Alu 1 302 -10 262 217 68 62 chr12 7836311 7836472 -136446017 - L1ME4a LINE L1 -4 6117 5956 2085 104 3 17 chr12 7836564 7836863 -136445626 - AluSg SINE Alu -15 295 1 239 327 36 12 chr12 7836871 7837039 -136445450 - L1ME4a LINE L1 -296 5825 5654 22 0 0 0 chr12 7837071 7837093 -136445396 + AT_rich Low_complexity Low_complexity 1 22 0 283 291 9 45 chr12 7837621 7837731 -136444758 - MIR SINE MIR -33 229 124 404 223 81 5 chr12 7838381 7838525 -136443964 - L1ME3 LINE L1 -1 6163 6009 1160 205 63 22 chr12 7838965 7839242 -136443247 - L1ME3 LINE L1 -167 5995 5702 1568 230 43 77 chr12 7839242 7839876 -136442613 + LTR9 LTR ERV1 1 612 0 1160 205 63 22 chr12 7839876 7839915 -136442574 - L1ME3 LINE L1 -460 5702 5666 992 128 0 0 chr12 7941685 7941826 -136340663 + AluSg/x SINE Alu 154 294 -18 2180 82 44 3 chr12 7941829 7942145 -136340344 - MER4E LTR ERV1 -316 450 122 1995 121 6 13 chr12 7942187 7942323 -136340166 + AluSq SINE Alu 1 136 -177 2145 112 0 0 chr12 7942323 7942626 -136339863 + AluSp SINE Alu 1 303 -10 1995 121 6 13 chr12 7942626 7942803 -136339686 + AluSq SINE Alu 136 312 -1 2024 148 0 0 chr12 7942812 7943122 -136339367 + AluSx SINE Alu 1 310 -2 1980 125 4 0 chr12 7943122 7943437 -136339052 + AluSx SINE Alu 3 318 0 411 265 34 17 chr12 7943437 7943554 -136338935 - L1M4 LINE L1 -1289 4857 4739 2339 68 0 0 chr12 7943554 7943861 -136338628 - AluY SINE Alu -4 307 1 2016 99 14 10 chr12 7943867 7944161 -136338328 - AluSq SINE Alu -18 295 1 1279 150 40 0 chr12 7944164 7944391 -136338098 - L1MB2 LINE L1 -286 5885 5650 1657 175 16 10 chr12 7944391 7944700 -136337789 - AluJo SINE Alu -1 311 1 606 213 25 8 chr12 7944708 7944830 -136337659 + FRAM SINE Alu 24 147 -29 183 129 0 0 chr12 7945012 7945043 -136337446 + (TG)n Simple_repeat Simple_repeat 2 32 0 268 144 0 24 chr12 7945154 7945204 -136337285 - Alu SINE Alu -261 39 1 2123 71 60 0 chr12 7945517 7945800 -136336689 + AluSx SINE Alu 1 300 -12 820 188 12 0 chr12 7945800 7945960 -136336529 + AluSg/x SINE Alu 132 293 -17 186 71 0 0 chr12 7946076 7946104 -136336385 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2492 44 0 0 chr12 7946149 7946447 -136336042 + AluY SINE Alu 1 298 -13 199 244 0 139 chr12 7946514 7946542 -136335947 - L2 LINE L2 -582 2732 2702 1304 178 36 39 chr12 7946542 7946851 -136335638 - AluJo SINE Alu -4 308 1 199 244 0 139 chr12 7946851 7946908 -136335581 - L2 LINE L2 -612 2702 2659 2047 124 7 0 chr12 7947434 7947740 -136334749 - AluSx SINE Alu 0 312 5 1991 108 7 0 chr12 7947998 7948286 -136334203 + AluSx SINE Alu 1 290 -22 255 173 0 0 chr12 7948500 7948552 -136333937 + (TATG)n Simple_repeat Simple_repeat 1 52 0 1515 150 14 38 chr12 7948558 7948845 -136333644 - AluJo SINE Alu -12 300 21 1046 106 0 0 chr12 7948865 7949007 -136333482 + AluSg/x SINE Alu 121 262 -50 1063 191 76 142 chr12 7949077 7949548 -136332941 - MER31B LTR ERV1 -20 446 7 1186 151 82 58 chr12 7949840 7949872 -136332617 - AluJb SINE Alu -1 311 281 477 0 0 0 chr12 7949872 7949925 -136332564 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1186 151 82 58 chr12 7949925 7950183 -136332306 - AluJb SINE Alu -31 281 14 508 173 71 39 chr12 7950218 7950345 -136332144 - FLAM_A SINE Alu -2 131 1 256 93 0 0 chr12 7950375 7950418 -136332071 - HY3 scRNA scRNA -2 99 57 2061 126 3 0 chr12 7950446 7950747 -136331742 + AluSg SINE Alu 2 303 -7 2100 101 0 20 chr12 7950749 7951079 -136331410 + AluSp SINE Alu 3 313 0 1118 206 79 115 chr12 7951172 7951437 -136331052 + MER39 LTR ERV1 1 274 -433 591 194 0 72 chr12 7951437 7951576 -136330913 - FLAM_A SINE Alu 0 133 5 1118 206 79 115 chr12 7951576 7951761 -136330728 + MER39 LTR ERV1 274 464 -243 2313 82 0 0 chr12 7951761 7952064 -136330425 - AluSc SINE Alu -2 307 5 1118 206 79 115 chr12 7952064 7952134 -136330355 + MER39 LTR ERV1 464 688 -19 762 68 0 0 chr12 7952561 7952664 -136329825 - AluSp/q SINE Alu -3 310 208 1288 141 0 134 chr12 7952665 7952767 -136329722 + AluJb SINE Alu 43 157 -155 207 0 0 0 chr12 7952767 7952790 -136329699 + (TA)n Simple_repeat Simple_repeat 2 24 0 1288 141 0 134 chr12 7952790 7952985 -136329504 + AluJb SINE Alu 157 300 -12 22 0 0 0 chr12 7953014 7953036 -136329453 + AT_rich Low_complexity Low_complexity 1 22 0 2119 128 0 0 chr12 7953144 7953442 -136329047 + AluSg SINE Alu 1 298 -12 279 311 113 0 chr12 7953445 7953551 -136328938 + L2 LINE L2 3191 3308 -5 360 160 0 55 chr12 7953678 7953756 -136328733 + AluS SINE Alu 1 57 -251 1605 159 45 3 chr12 7953784 7954073 -136328416 + AluJb SINE Alu 1 301 -11 2212 75 7 3 chr12 7954420 7954725 -136327764 + AluSg SINE Alu 1 306 -4 2369 49 0 33 chr12 7954824 7955129 -136327360 - AluY SINE Alu -14 297 3 1116 165 40 0 chr12 7955135 7955359 -136327130 - L1PA13 LINE L1 0 6163 5931 301 325 0 0 chr12 7955720 7955800 -136326689 + L1ME LINE L1 5740 5819 -302 1680 131 4 0 chr12 7955816 7956075 -136326414 + AluSx SINE Alu 1 260 -52 329 170 0 0 chr12 7956348 7956401 -136326088 + Alu SINE Alu 1 53 -249 2003 113 10 3 chr12 7956419 7956710 -136325779 - AluSc SINE Alu -16 293 1 412 261 153 25 chr12 7956769 7956926 -136325563 + MIR SINE MIR 79 255 -7 2514 37 3 0 chr12 7958168 7958465 -136324024 + AluY SINE Alu 3 300 -11 1028 181 43 0 chr12 7958509 7958719 -136323770 + Charlie4a DNA MER1_type 25 243 -265 822 163 0 0 chr12 7958723 7958864 -136323625 + FLAM_C SINE Alu 3 143 0 692 159 24 111 chr12 7958884 7959022 -136323467 + Charlie4a DNA MER1_type 228 336 -1625 2391 77 0 0 chr12 7959022 7959333 -136323156 + AluY SINE Alu 1 311 0 692 159 24 111 chr12 7959333 7959446 -136323043 + Charlie4a DNA MER1_type 336 457 -51 1972 100 20 20 chr12 7959447 7959747 -136322742 + AluSp SINE Alu 1 300 -13 572 204 14 78 chr12 7959979 7960121 -136322368 - FLAM_A SINE Alu -1 141 9 2032 100 7 3 chr12 7960363 7960654 -136321835 + AluSc SINE Alu 2 293 -16 329 170 0 0 chr12 7960672 7960725 -136321764 - Alu SINE Alu -249 53 1 2117 96 0 35 chr12 7960806 7960975 -136321514 - AluSx SINE Alu -10 302 147 2159 105 3 0 chr12 7960975 7961271 -136321218 - AluSp SINE Alu -15 298 2 2117 96 0 35 chr12 7961271 7961414 -136321075 - AluSx SINE Alu -165 147 1 275 313 62 20 chr12 7961426 7961621 -136320868 - L1ME LINE L1 -304 5817 5615 1570 181 0 0 chr12 7961726 7961992 -136320497 + AluJo SINE Alu 3 268 -44 25 65 0 0 chr12 7962011 7962057 -136320432 + AT_rich Low_complexity Low_complexity 1 46 0 21 71 0 0 chr12 7962143 7962185 -136320304 + AT_rich Low_complexity Low_complexity 1 42 0 1780 116 4 11 chr12 7962232 7962499 -136319990 - AluSp SINE Alu -48 265 1 389 223 0 0 chr12 7962586 7962664 -136319825 - AluJ/FRAM SINE Alu -15 287 216 192 97 0 0 chr12 7962871 7962902 -136319587 + (T)n Simple_repeat Simple_repeat 1 31 0 24 0 0 0 chr12 7963474 7963498 -136318991 + AT_rich Low_complexity Low_complexity 1 24 0 1342 211 16 20 chr12 7963871 7964175 -136318314 - AluSp SINE Alu 0 303 1 1829 150 3 0 chr12 7964191 7964478 -136318011 - AluSq SINE Alu -25 288 1 523 89 13 13 chr12 7964946 7965025 -136317464 + AluY SINE Alu 5 83 -228 1818 96 0 116 chr12 7965165 7965509 -136316980 + AluSx SINE Alu 1 304 -8 417 151 82 0 chr12 7965772 7965845 -136316644 + AluJ/FLAM SINE Alu 2 80 -232 704 154 46 23 chr12 7966007 7966137 -136316352 + AluJo/FLAM SINE Alu 1 133 -169 1687 100 25 0 chr12 7966140 7966381 -136316108 + AluSx SINE Alu 1 247 -65 1776 135 10 0 chr12 7966525 7966813 -136315676 + AluSx SINE Alu 15 305 -7 1198 279 71 16 chr12 7966814 7967284 -136315205 + MLT1D LTR MaLR 8 503 -2 1172 157 4 0 chr12 7967673 7968496 -136313993 - ALR/Alpha Satellite centromeric 0 826 1 1094 162 7 0 chr12 7968509 7969143 -136313346 - ALR/Alpha Satellite centromeric 0 638 1 844 206 0 76 chr12 7969280 7969342 -136313147 + AluJb SINE Alu 89 154 -158 2014 96 39 0 chr12 7969342 7969623 -136312866 + AluSp SINE Alu 7 298 -15 844 206 0 76 chr12 7969623 7969798 -136312691 + AluJb SINE Alu 154 308 -4 2290 65 0 3 chr12 7970059 7970351 -136312138 + AluSc SINE Alu 1 291 -18 1734 50 27 0 chr12 7970430 7970651 -136311838 + L1PA5 LINE L1 5926 6152 -2 1638 168 10 14 chr12 7970667 7970958 -136311531 + AluJo SINE Alu 1 290 -22 367 281 114 52 chr12 7971122 7971332 -136311157 - MIR SINE MIR -37 225 3 888 241 26 44 chr12 7971491 7971719 -136310770 + MER58A DNA MER1_type 1 224 0 1865 152 3 7 chr12 7972219 7972521 -136309968 - AluSx SINE Alu -11 301 1 2140 69 22 4 chr12 7972530 7972843 -136309646 - AluY SINE Alu 0 318 1 26 30 0 0 chr12 7972916 7972949 -136309540 + AT_rich Low_complexity Low_complexity 1 33 0 229 275 38 23 chr12 7973019 7973150 -136309339 - L1MDa LINE L1 -4989 1541 1409 2105 76 0 73 chr12 7973151 7973468 -136309021 - AluSg SINE Alu -16 294 1 325 272 44 20 chr12 7973475 7973594 -136308895 - L1MDa LINE L1 -5135 1408 1285 2241 83 10 0 chr12 7973643 7973945 -136308544 - AluSg SINE Alu -5 305 1 2177 116 0 0 chr12 7973946 7974247 -136308242 - AluSx SINE Alu -9 303 3 1948 136 0 3 chr12 7974250 7974551 -136307938 - AluSx SINE Alu -12 300 1 23 0 0 0 chr12 7974596 7974619 -136307870 + AT_rich Low_complexity Low_complexity 1 23 0 2057 119 10 0 chr12 7974622 7974917 -136307572 + AluSx SINE Alu 1 298 -14 236 273 91 23 chr12 7974940 7975028 -136307461 - L1MDa LINE L1 -5490 1040 947 261 233 105 23 chr12 7975192 7975278 -136307211 + L2 LINE L2 3221 3313 0 952 155 0 0 chr12 7975432 7975587 -136306902 + AluSg/x SINE Alu 156 310 -2 1861 145 0 42 chr12 7975595 7975689 -136306800 + AluSx SINE Alu 1 97 -215 2396 67 0 0 chr12 7975689 7975988 -136306501 + AluY SINE Alu 1 299 -12 1861 145 0 42 chr12 7975988 7976204 -136306285 + AluSx SINE Alu 97 298 -14 522 317 123 18 chr12 7976260 7976487 -136306002 + MIR SINE MIR 12 262 0 21 0 0 0 chr12 7976840 7976861 -136305628 + AT_rich Low_complexity Low_complexity 1 21 0 772 281 7 10 chr12 7976863 7977165 -136305324 + AluY SINE Alu 1 301 0 1085 201 0 0 chr12 7977165 7977379 -136305110 + AluSg/x SINE Alu 83 296 -14 522 317 123 18 chr12 7977435 7977662 -136304827 + MIR SINE MIR 12 262 0 1821 97 48 28 chr12 7977674 7977964 -136304525 - AluY SINE Alu -15 296 1 2217 94 0 7 chr12 7977993 7978302 -136304187 + AluSc SINE Alu 1 307 -2 2061 130 0 0 chr12 7978315 7978616 -136303873 + AluSx SINE Alu 1 301 -11 820 194 0 0 chr12 7978684 7978818 -136303671 - AluSg/x SINE Alu -23 289 156 4228 90 26 5 chr12 7979135 7979703 -136302786 - LTR19B LTR ERV1 0 580 1 2122 114 3 3 chr12 7979987 7980286 -136302203 - AluSx SINE Alu -13 299 1 358 332 20 50 chr12 7980308 7980507 -136301982 - MIR SINE MIR -46 216 24 198 143 0 0 chr12 7981195 7981230 -136301259 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 200 264 0 19 chr12 7981231 7981284 -136301205 - L2 LINE L2 0 3313 3262 2355 58 0 19 chr12 7981332 7981642 -136300847 - AluY SINE Alu -7 304 1 1969 151 12 82 chr12 7981683 7981862 -136300627 + MLT1B LTR MaLR 1 191 -199 1587 160 26 49 chr12 7981862 7981999 -136300490 + AluJo SINE Alu 12 151 -161 2298 80 7 3 chr12 7981999 7982301 -136300188 + AluSq SINE Alu 1 303 -10 1587 160 26 49 chr12 7982301 7982469 -136300020 + AluJo SINE Alu 151 310 -2 1969 151 12 82 chr12 7982469 7982705 -136299784 + MLT1B LTR MaLR 191 387 -3 2099 85 0 50 chr12 7983008 7983325 -136299164 - AluSg1 SINE Alu -8 301 1 2098 113 3 7 chr12 7983673 7983975 -136298514 + AluSq SINE Alu 1 301 -12 301 224 112 65 chr12 7984077 7984184 -136298305 + MER5B DNA MER1_type 2 113 -65 2271 198 40 28 chr12 7984287 7984348 -136298141 - MLT1D LTR MaLR -3 502 443 1222 169 177 0 chr12 7984348 7984597 -136297892 - AluSx SINE Alu -9 293 1 2271 198 40 28 chr12 7984597 7985031 -136297458 - MLT1D LTR MaLR -62 443 1 1858 150 0 0 chr12 7985036 7985322 -136297167 - AluSx SINE Alu -13 299 14 1646 178 0 7 chr12 7985658 7985956 -136296533 + AluJo SINE Alu 1 296 -16 2164 93 3 16 chr12 7986997 7987307 -136295182 - AluSq SINE Alu -7 306 1 2289 94 0 0 chr12 7987367 7987665 -136294824 - AluSx SINE Alu -14 298 1 292 165 0 0 chr12 7987783 7987834 -136294655 - AluJo SINE Alu -7 295 251 1098 171 0 5 chr12 7987836 7988023 -136294466 - AluJo SINE Alu -126 186 1 942 163 12 12 chr12 7988025 7988197 -136294292 - FAM SINE Alu -3 172 1 23 0 0 0 chr12 7988198 7988221 -136294268 + AT_rich Low_complexity Low_complexity 1 23 0 1085 180 48 89 chr12 7988226 7988345 -136294144 + L1M4 LINE L1 4683 4805 -1341 2045 119 3 0 chr12 7988345 7988648 -136293841 + AluSx SINE Alu 1 304 -8 1085 180 48 89 chr12 7988648 7988749 -136293740 + L1M4 LINE L1 4805 4889 -1257 206 32 32 0 chr12 7988749 7988780 -136293709 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1085 180 48 89 chr12 7988780 7988874 -136293615 + L1M4 LINE L1 4889 4985 -1161 1993 99 0 34 chr12 7989101 7989421 -136293068 + AluSq SINE Alu 1 310 0 209 236 36 0 chr12 7989451 7989506 -136292983 + CT-rich Low_complexity Low_complexity 2 58 0 772 209 7 7 chr12 7989528 7989676 -136292813 - AluJo SINE Alu -163 149 2 525 253 104 12 chr12 7989680 7989929 -136292560 + L1MC4 LINE L1 7768 8039 -3 1104 172 18 9 chr12 7989986 7990207 -136292282 + AluJb SINE Alu 87 309 -3 947 146 0 62 chr12 7990306 7990484 -136292005 + AluSp SINE Alu 137 303 -10 573 221 159 12 chr12 7990501 7990679 -136291810 + MIR SINE MIR 49 251 -11 2090 111 0 0 chr12 7990786 7991075 -136291414 + AluSx SINE Alu 1 289 -23 2023 121 23 3 chr12 7991252 7991558 -136290931 + AluSq SINE Alu 2 313 0 365 118 0 2 chr12 7991655 7991721 -136290768 + Alu SINE Alu 244 299 -3 3656 182 92 26 chr12 7991793 7992501 -136289988 + MER21B LTR ERV1 1 762 -101 2102 121 7 0 chr12 7992501 7992807 -136289682 + AluSq SINE Alu 1 308 -5 3656 182 92 26 chr12 7992807 7992840 -136289649 + MER21B LTR ERV1 762 791 -72 651 192 233 0 chr12 7994050 7994222 -136288267 + L1MC1 LINE L1 6110 6321 -12 192 125 0 0 chr12 7994363 7994395 -136288094 + (A)n Simple_repeat Simple_repeat 1 32 0 1426 136 14 85 chr12 7994536 7994831 -136287658 - AluJb SINE Alu -24 288 15 1954 113 0 7 chr12 7994839 7995131 -136287358 - AluSq SINE Alu -23 290 1 2375 68 0 3 chr12 7995632 7995941 -136286548 + AluY SINE Alu 1 308 -3 1221 77 6 22 chr12 7995947 7996128 -136286361 + AluSq SINE Alu 120 297 -16 648 239 176 10 chr12 7996172 7996377 -136286112 - MER8 DNA MER2_type 0 239 1 1594 44 0 10 chr12 7996414 7996618 -136285871 - AluY SINE Alu -28 283 82 924 130 7 0 chr12 7996627 7996773 -136285716 - AluJb SINE Alu -24 288 142 539 178 110 0 chr12 7997774 7997892 -136284597 + FLAM_A SINE Alu 2 132 -1 2094 84 17 3 chr12 7997900 7998197 -136284292 + AluSg SINE Alu 1 301 -9 2394 64 0 0 chr12 7998431 7998742 -136283747 + AluY SINE Alu 1 311 0 261 0 0 0 chr12 7998896 7998925 -136283564 + (A)n Simple_repeat Simple_repeat 1 29 0 234 62 0 0 chr12 7999469 7999501 -136282988 + (T)n Simple_repeat Simple_repeat 1 32 0 609 118 0 64 chr12 8000163 8000273 -136282216 + FRAM SINE Alu 56 158 -18 392 217 123 9 chr12 8000290 8000396 -136282093 + MER5A DNA MER1_type 45 162 -27 188 167 0 0 chr12 8000423 8000453 -136282036 + MER5A DNA MER1_type 148 177 -12 1968 136 0 37 chr12 8000663 8000799 -136281690 + AluSx SINE Alu 1 141 -171 2111 109 0 0 chr12 8000799 8001093 -136281396 + AluY SINE Alu 1 294 -17 1968 136 0 37 chr12 8001093 8001279 -136281210 + AluSx SINE Alu 141 311 -1 337 296 58 108 chr12 8001291 8001432 -136281057 + HAL1 LINE L1 2188 2335 -172 2078 132 0 3 chr12 8001432 8001742 -136280747 + AluSq SINE Alu 1 309 -4 337 296 58 108 chr12 8001742 8001765 -136280724 + HAL1 LINE L1 2335 2358 -149 1884 133 36 7 chr12 8001765 8002067 -136280422 + AluSx SINE Alu 1 311 -1 337 296 58 108 chr12 8002067 8002141 -136280348 + HAL1 LINE L1 2358 2415 -92 1811 137 37 0 chr12 8002265 8002564 -136279925 + AluSg SINE Alu 1 310 0 1192 149 0 5 chr12 8002815 8003009 -136279480 + AluJo SINE Alu 1 193 -119 1567 90 24 0 chr12 8003016 8003228 -136279261 - AluSx SINE Alu -95 217 1 417 165 13 0 chr12 8003228 8003307 -136279182 - MER39 LTR ERV1 -45 662 583 1410 159 14 41 chr12 8003307 8003602 -136278887 + AluJo SINE Alu 1 287 -25 219 139 0 0 chr12 8003660 8003696 -136278793 + (TG)n Simple_repeat Simple_repeat 1 36 0 2446 62 3 0 chr12 8003772 8004079 -136278410 - AluSp SINE Alu -5 308 1 2306 73 3 3 chr12 8004100 8004413 -136278076 - AluSp SINE Alu 0 313 1 2174 94 3 0 chr12 8005172 8005471 -136277018 - AluSx SINE Alu -11 301 2 632 134 10 0 chr12 8005472 8005569 -136276920 + L1MC3 LINE L1 6718 6815 -970 464 125 0 0 chr12 8005581 8005645 -136276844 + AluJ/FLAM SINE Alu 3 66 -246 323 224 30 0 chr12 8005645 8005712 -136276777 - LTR9B LTR ERV1 0 644 576 1752 169 7 0 chr12 8005713 8006015 -136276474 + AluSg SINE Alu 1 304 -6 834 152 103 0 chr12 8006028 8006193 -136276296 + L1MC3 LINE L1 6887 7068 -717 885 198 0 0 chr12 8006202 8006384 -136276105 - AluJo SINE Alu -12 300 119 372 153 133 102 chr12 8006411 8006509 -136275980 + L1MC3 LINE L1 7070 7170 -615 1754 216 39 44 chr12 8006598 8007009 -136275480 + LTR2 LTR ERV1 41 449 0 2188 114 7 0 chr12 8007028 8007336 -136275153 + AluSg SINE Alu 1 310 0 1781 123 88 0 chr12 8007368 8007653 -136274836 + AluSx SINE Alu 1 310 -2 244 150 0 25 chr12 8007672 8007712 -136274777 - Alu SINE Alu -261 39 1 1849 111 13 30 chr12 8007764 8008062 -136274427 + AluSg SINE Alu 1 293 -17 37 52 0 0 chr12 8008062 8008120 -136274369 + AT_rich Low_complexity Low_complexity 1 58 0 1303 193 20 20 chr12 8008193 8008493 -136273996 + AluSp SINE Alu 1 300 -13 2137 95 20 0 chr12 8008552 8008846 -136273643 - AluSx SINE Alu -12 300 1 704 154 46 23 chr12 8008849 8008979 -136273510 - AluJo/FLAM SINE Alu -169 133 1 1881 91 0 114 chr12 8009241 8009582 -136272907 - AluSg SINE Alu -8 302 1 1565 155 25 41 chr12 8009707 8010024 -136272465 + AluJb SINE Alu 1 312 0 285 299 180 50 chr12 8010044 8010323 -136272166 - L2 LINE L2 -311 3002 2687 2025 90 16 39 chr12 8010323 8010634 -136271855 + AluSx SINE Alu 1 304 -8 258 347 0 0 chr12 8010648 8010720 -136271769 + L2 LINE L2 3242 3313 0 303 210 86 12 chr12 8010771 8010852 -136271637 + MER5A DNA MER1_type 35 121 -68 454 258 39 79 chr12 8011237 8011415 -136271074 + MIR SINE MIR 53 223 -39 420 253 0 0 chr12 8012049 8012132 -136270357 - L2 LINE L2 0 3272 3190 1588 113 36 0 chr12 8012165 8012387 -136270102 - MER30 DNA MER1_type 0 230 1 1770 165 0 13 chr12 8012429 8012745 -136269744 - AluJo SINE Alu 0 312 1 2305 88 3 0 chr12 8012951 8013257 -136269232 - AluSp SINE Alu -6 307 1 277 356 0 0 chr12 8013363 8013453 -136269036 + L2 LINE L2 3183 3272 0 675 154 14 77 chr12 8013516 8013659 -136268830 - FLAM_A SINE Alu -1 141 8 435 313 126 47 chr12 8013795 8013900 -136268589 + MIR SINE MIR 32 127 -135 2312 39 7 4 chr12 8013900 8014203 -136268286 + AluY SINE Alu 2 305 0 435 313 126 47 chr12 8014203 8014310 -136268179 + MIR SINE MIR 127 262 0 673 233 0 0 chr12 8014347 8014476 -136268013 + FLAM_A SINE Alu 3 131 -2 270 81 0 0 chr12 8014496 8014533 -136267956 + (A)n Simple_repeat Simple_repeat 1 37 0 203 294 39 78 chr12 8014589 8014668 -136267821 + MIR3 SINE MIR 8 85 -123 2142 88 3 0 chr12 8014668 8014982 -136267507 + AluSq SINE Alu 1 315 0 203 294 39 78 chr12 8014982 8015003 -136267486 + MIR3 SINE MIR 85 105 -103 2119 110 0 25 chr12 8015160 8015477 -136267012 + AluSx SINE Alu 1 309 -3 1837 116 4 0 chr12 8015554 8015812 -136266677 + AluSx SINE Alu 53 311 -1 345 307 80 22 chr12 8015823 8015960 -136266529 + MIR SINE MIR 2 146 -116 1175 108 18 0 chr12 8015961 8016127 -136266362 + L1PA12 LINE L1 5993 6161 -7 2436 44 0 16 chr12 8016127 8016442 -136266047 + AluY SINE Alu 1 310 -1 1924 136 0 13 chr12 8016453 8016761 -136265728 + AluSx SINE Alu 1 304 -8 555 273 73 14 chr12 8016825 8017045 -136265444 + L1ME LINE L1 5378 5610 -511 842 171 8 139 chr12 8017048 8017293 -136265196 + AluJo SINE Alu 2 214 -98 831 120 0 8 chr12 8017341 8017474 -136265015 + FLAM_C SINE Alu 2 133 0 2127 116 0 0 chr12 8017769 8018070 -136264419 + AluSx SINE Alu 1 301 -11 1831 120 39 3 chr12 8018288 8018405 -136264084 + AluSc SINE Alu 3 114 -195 272 27 27 0 chr12 8018405 8018442 -136264047 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 1831 120 39 3 chr12 8018442 8018607 -136263882 + AluSc SINE Alu 114 295 -14 2509 53 0 0 chr12 8019367 8019670 -136262819 - AluY SINE Alu -6 305 3 1001 130 0 0 chr12 8019992 8020130 -136262359 + AluSq/x SINE Alu 1 138 -174 1978 117 4 0 chr12 8020146 8020427 -136262062 + AluSx SINE Alu 21 302 -10 2184 110 0 17 chr12 8020834 8020969 -136261520 + AluSg SINE Alu 1 137 -173 2089 129 3 7 chr12 8020969 8021263 -136261226 + AluSg SINE Alu 1 293 -17 2184 110 0 17 chr12 8021263 8021428 -136261061 + AluSg SINE Alu 137 296 -14 1833 111 0 64 chr12 8021429 8021574 -136260915 + AluY SINE Alu 1 154 -157 2585 61 0 3 chr12 8021574 8021885 -136260604 + AluY SINE Alu 1 310 -1 2325 99 0 10 chr12 8021886 8022198 -136260291 + AluY SINE Alu 3 311 0 1833 111 0 64 chr12 8022198 8022347 -136260142 + AluY SINE Alu 153 278 -33 494 92 0 0 chr12 8022379 8022444 -136260045 - AluJ/FLAM SINE Alu -247 65 1 2493 86 0 0 chr12 8022703 8023004 -136259485 + AluY SINE Alu 1 301 -10 315 267 38 86 chr12 8023054 8023228 -136259261 - MIR SINE MIR -14 194 32 288 0 0 0 chr12 8023463 8023495 -136258994 + (TG)n Simple_repeat Simple_repeat 1 32 0 2068 128 3 22 chr12 8023557 8023870 -136258619 + AluSq SINE Alu 1 307 -6 273 290 0 0 chr12 8023875 8023944 -136258545 - MIR SINE MIR -74 188 120 343 25 0 0 chr12 8023945 8023985 -136258504 - tRNA-Thr-ACA tRNA tRNA -36 40 1 228 239 69 28 chr12 8023991 8024084 -136258405 - MIR SINE MIR -80 128 32 2302 84 7 23 chr12 8024290 8024599 -136257890 + AluSx SINE Alu 1 304 -8 626 228 16 0 chr12 8024911 8025038 -136257451 - MER5A DNA MER1_type 0 189 61 1631 143 3 14 chr12 8025039 8025326 -136257163 - MER39 LTR ERV1 0 707 424 2250 56 66 3 chr12 8025327 8025613 -136256876 - AluSg SINE Alu -6 304 1 2144 106 3 0 chr12 8025726 8026037 -136256452 - AluSq SINE Alu 0 312 1 225 0 0 0 chr12 8026131 8026156 -136256333 + (A)n Simple_repeat Simple_repeat 1 25 0 180 111 0 0 chr12 8026154 8026181 -136256308 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 * 335 303 51 17 chr12 8026422 8026597 -136255892 + L1ME4a LINE L1 5940 6120 -1 1563 160 3 95 chr12 8026599 8026771 -136255718 - AluJo SINE Alu -4 308 122 216 0 0 0 chr12 8026771 8026795 -136255694 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1835 130 0 11 chr12 8026795 8027056 -136255433 - AluSp SINE Alu -21 292 35 1563 160 3 95 chr12 8027056 8027219 -136255270 - AluJo SINE Alu -188 124 3 697 49 0 0 chr12 8027251 8027333 -136255156 - AluS SINE Alu -230 83 2 2158 122 6 35 chr12 8027338 8027657 -136254832 - AluSx SINE Alu -2 310 1 1611 148 15 77 chr12 8027771 8027913 -136254576 + AluSx SINE Alu 1 150 -162 2394 93 0 3 chr12 8027913 8028223 -136254266 + AluSg SINE Alu 1 309 -1 1611 148 15 77 chr12 8028223 8028404 -136254085 + AluSx SINE Alu 150 304 -8 2035 132 0 0 chr12 8028405 8028685 -136253804 + AluSx SINE Alu 1 280 -32 282 29 0 0 chr12 8028686 8028721 -136253768 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 1883 178 0 0 chr12 8028763 8029066 -136253423 + AluJb SINE Alu 1 303 -9 1750 53 31 13 chr12 8029564 8029790 -136252699 - AluY SINE Alu -81 230 1 2049 171 9 11 chr12 8029813 8030167 -136252322 + MLT1A1 LTR MaLR 1 437 -20 2195 114 0 3 chr12 8030167 8030466 -136252023 + AluSx SINE Alu 1 298 -14 2049 171 9 11 chr12 8030466 8030487 -136252002 + MLT1A1 LTR MaLR 437 457 0 23 0 0 0 chr12 8030570 8030593 -136251896 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr12 8030625 8030653 -136251836 + AT_rich Low_complexity Low_complexity 1 28 0 368 117 67 0 chr12 8030833 8030893 -136251596 - AluSx SINE Alu -4 296 233 4344 139 122 34 chr12 8030893 8032144 -136250345 + pTR5 LTR ERV1 290 2295 -143 1635 155 4 0 chr12 8032144 8032383 -136250106 - AluSx SINE Alu -72 240 1 1331 211 106 7 chr12 8032483 8032662 -136249827 - AluJo SINE Alu 0 312 93 213 65 0 0 chr12 8032662 8032693 -136249796 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1331 211 106 7 chr12 8032693 8032797 -136249692 - AluJo SINE Alu -219 93 1 361 269 92 15 chr12 8033059 8033189 -136249300 + MLT1H LTR MaLR 409 548 -1 1725 191 0 17 chr12 8033237 8033536 -136248953 + AluJo SINE Alu 1 294 -18 2121 121 3 13 chr12 8033537 8033835 -136248654 + AluSp SINE Alu 1 295 -18 1272 209 51 32 chr12 8033904 8033939 -136248550 + LTR53 LTR ERVL 189 222 -297 2028 172 0 3 chr12 8033939 8034247 -136248242 - AluSx SINE Alu -5 307 1 1272 209 51 32 chr12 8034247 8034522 -136247967 + LTR53 LTR ERVL 222 505 -14 2419 79 0 3 chr12 8034981 8035273 -136247216 - AluSc SINE Alu -18 291 1 244 137 0 39 chr12 8035459 8035508 -136246981 + Alu SINE Alu 1 47 -86 485 116 0 0 chr12 8035508 8035577 -136246912 - THE1C LTR MaLR 0 375 307 449 63 0 0 chr12 8035578 8035641 -136246848 - AluSp/q SINE Alu -11 302 240 1811 119 0 0 chr12 8035643 8035886 -136246603 + AluSg/x SINE Alu 67 309 -3 2504 72 7 0 chr12 8036396 8036702 -136245787 + AluSp SINE Alu 1 308 -5 451 236 11 0 chr12 8036732 8036821 -136245668 + FRAM/FAM SINE Alu 1 84 -92 2641 55 3 0 chr12 8037276 8037586 -136244903 - AluY SINE Alu 0 311 1 1462 225 32 42 chr12 8037743 8037787 -136244702 - MLT1A2 LTR MaLR 0 374 331 2456 101 0 0 chr12 8037787 8038095 -136244394 + AluSx SINE Alu 1 308 -4 1462 225 32 42 chr12 8038095 8038428 -136244061 - MLT1A2 LTR MaLR -43 331 1 1954 125 34 3 chr12 8038612 8038907 -136243582 + AluJo SINE Alu 1 304 -8 2126 150 52 86 chr12 8039284 8039725 -136242764 + MSTB LTR MaLR 1 426 0 2119 46 102 25 chr12 8039858 8040143 -136242346 + AluY SINE Alu 1 307 -4 364 201 84 123 chr12 8040374 8040553 -136241936 - L2 LINE L2 -10 3303 3132 2177 100 4 7 chr12 8040662 8040990 -136241499 - AluSg SINE Alu 0 329 3 2282 114 7 0 chr12 8040992 8041289 -136241200 - AluSx SINE Alu -13 299 1 1986 141 0 36 chr12 8041303 8041489 -136241000 - AluSq SINE Alu 0 313 148 2094 103 39 3 chr12 8041489 8041771 -136240718 - AluSx SINE Alu -20 292 1 1986 141 0 36 chr12 8041771 8041914 -136240575 - AluSq SINE Alu -165 148 1 207 247 65 32 chr12 8042161 8042254 -136240235 + L2 LINE L2 2239 2334 -980 693 174 0 43 chr12 8042254 8042392 -136240097 + AluJo/FLAM SINE Alu 1 132 -170 1315 62 80 0 chr12 8042394 8042570 -136239919 + AluY SINE Alu 3 192 -119 2118 117 53 91 chr12 8042687 8042847 -136239642 - Tigger1 DNA MER2_type -1983 435 271 2433 87 0 6 chr12 8042847 8043158 -136239331 - AluSc SINE Alu 0 309 1 2118 117 53 91 chr12 8043158 8043449 -136239040 - Tigger1 DNA MER2_type -2147 271 1 541 252 38 0 chr12 8043449 8043580 -136238909 - L2 LINE L2 -251 3062 2927 433 224 116 48 chr12 8043608 8043755 -136238734 - MER58B DNA MER1_type -3 338 182 2214 85 4 0 chr12 8043776 8044080 -136238409 + AluY SINE Alu 1 305 0 754 227 26 5 chr12 8044082 8044276 -136238213 + L1M4 LINE L1 5100 5297 -849 2158 117 7 3 chr12 8044298 8044607 -136237882 + AluY SINE Alu 1 310 -1 1356 135 34 10 chr12 8044774 8044981 -136237508 - AluSg/x SINE Alu -10 302 91 3821 170 72 51 chr12 8044981 8045786 -136236703 - LTR12 LTR ERV1 0 826 5 1149 167 27 12 chr12 8045801 8046059 -136236430 - pTR5 LTR ERV1 -1093 1345 1084 307 146 0 0 chr12 8046059 8046107 -136236382 - Alu SINE Alu -243 56 9 2291 106 0 3 chr12 8046122 8046424 -136236065 - AluSg SINE Alu -3 307 7 2192 118 3 0 chr12 8046429 8046733 -136235756 - AluSx SINE Alu -7 305 1 313 300 190 0 chr12 8046828 8046928 -136235561 + MER91A DNA MER1_type 58 176 -20 287 286 57 0 chr12 8046939 8047009 -136235480 + MER91A DNA MER1_type 123 196 0 402 183 43 35 chr12 8047036 8047151 -136235338 + Charlie2 DNA MER1_type 2726 2841 -21 2374 94 3 0 chr12 8047323 8047620 -136234869 + AluSp SINE Alu 2 299 -14 199 374 65 0 chr12 8048438 8048561 -136233928 + L2 LINE L2 2949 3079 -193 783 289 60 13 chr12 8048691 8048989 -136233500 + L2 LINE L2 575 886 -2428 2188 125 0 13 chr12 8048994 8049307 -136233182 - AluSx SINE Alu -3 309 1 1865 193 52 18 chr12 8049307 8049615 -136232874 + L1M4 LINE L1 4845 5176 -970 2378 107 3 0 chr12 8049615 8049924 -136232565 + AluSp SINE Alu 1 310 -3 1865 193 52 18 chr12 8049924 8050072 -136232417 + L1M4 LINE L1 5176 5317 -829 511 309 65 13 chr12 8050076 8050261 -136232228 - L2 LINE L2 -1317 1997 1796 1591 151 4 39 chr12 8050261 8050540 -136231949 - AluSx SINE Alu -11 301 33 511 309 65 13 chr12 8050540 8050584 -136231905 - L2 LINE L2 -1518 1796 1756 799 163 16 0 chr12 8050589 8050718 -136231771 + FLAM_A SINE Alu 1 131 -2 2168 133 3 0 chr12 8050807 8051107 -136231382 - AluSq SINE Alu -12 301 1 2330 85 0 3 chr12 8051129 8051444 -136231045 - AluSc SINE Alu 0 314 1 400 93 0 0 chr12 8051520 8051574 -136230915 + Alu SINE Alu 243 296 -14 581 284 18 30 chr12 8051574 8051743 -136230746 - MER5A DNA MER1_type -16 173 7 467 251 27 53 chr12 8051831 8051938 -136230551 - Charlie2 DNA MER1_type -2602 260 159 1536 171 36 39 chr12 8051938 8052243 -136230246 - 7SLRNA srpRNA srpRNA -15 305 2 467 251 27 53 chr12 8052243 8052322 -136230167 - Charlie2 DNA MER1_type -2703 159 79 26 45 0 45 chr12 8052366 8052432 -136230057 + AT_rich Low_complexity Low_complexity 1 63 0 2302 108 3 0 chr12 8052479 8052786 -136229703 + AluSg SINE Alu 1 308 -2 870 138 0 15 chr12 8052974 8053104 -136229385 + FLAM_C SINE Alu 2 129 -4 2320 102 3 0 chr12 8053306 8053610 -136228879 + AluSg SINE Alu 1 305 -5 2025 99 3 87 chr12 8053615 8053937 -136228552 + AluSp SINE Alu 19 313 0 909 324 35 19 chr12 8053940 8054314 -136228175 - L2 LINE L2 -660 2654 2275 238 121 0 0 chr12 8054315 8054348 -136228141 + U2 snRNA snRNA 1 33 -155 556 273 120 34 chr12 8054394 8054661 -136227828 - L3 LINE CR1 -145 1432 1143 1185 130 12 0 chr12 8054792 8054961 -136227528 - AluSg/x SINE Alu -8 302 132 2257 105 31 0 chr12 8054961 8055255 -136227234 - AluSg SINE Alu -7 303 1 321 241 38 0 chr12 8055585 8055664 -136226825 - L3 LINE CR1 -1081 496 415 916 228 25 0 chr12 8055664 8055861 -136226628 + MER20 DNA MER1_type 1 202 -17 677 121 0 0 chr12 8057596 8057695 -136224794 + HY3 scRNA scRNA 2 100 -1 25 0 0 0 chr12 8057695 8057720 -136224769 + AT_rich Low_complexity Low_complexity 1 25 0 2397 86 0 3 chr12 8057720 8058024 -136224465 + AluSc SINE Alu 1 303 -6 2211 100 0 19 chr12 8058486 8058795 -136223694 - AluSg SINE Alu -7 303 1 1842 162 0 4 chr12 8058918 8059189 -136223300 - AluJb SINE Alu -38 274 5 2019 116 10 3 chr12 8059262 8059556 -136222933 + AluSx SINE Alu 4 299 -13 2513 70 0 3 chr12 8059558 8059857 -136222632 + AluSq SINE Alu 1 298 -15 22 0 0 0 chr12 8060018 8060040 -136222449 + AT_rich Low_complexity Low_complexity 1 22 0 508 151 75 0 chr12 8061033 8061126 -136221363 - HY3 scRNA scRNA -1 100 1 2254 106 3 0 chr12 8061135 8061443 -136221046 - AluSp SINE Alu 0 309 1 395 192 0 0 chr12 8061445 8061518 -136220971 - MER5A DNA MER1_type -115 74 2 281 113 113 19 chr12 8061729 8061782 -136220707 + MER81 DNA DNA 36 93 -21 501 176 0 44 chr12 8062080 8062171 -136220318 - AluJ/FLAM SINE Alu -224 88 2 2294 101 0 3 chr12 8062200 8062496 -136219993 + AluSg SINE Alu 1 295 -15 257 143 0 0 chr12 8062497 8062539 -136219950 + Charlie5 DNA MER1_type 2544 2585 -27 180 0 0 0 chr12 8063318 8063338 -136219151 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1410 112 11 0 chr12 8063342 8063530 -136218959 - AluSg/x SINE Alu -37 275 86 1475 127 53 133 chr12 8063989 8064311 -136218178 - AluJo SINE Alu -14 298 3 614 179 17 8 chr12 8064370 8064487 -136218002 + FLAM_C SINE Alu 26 143 0 2263 77 0 48 chr12 8064923 8065235 -136217254 - AluSx SINE Alu -15 297 1 591 188 0 0 chr12 8066080 8066181 -136216308 + FLAM_A SINE Alu 1 101 -41 2315 102 3 0 chr12 8066587 8066892 -136215597 - AluSx SINE Alu -5 307 2 2344 111 0 0 chr12 8067580 8067878 -136214611 - AluSq SINE Alu -15 298 1 928 184 0 0 chr12 8068084 8068231 -136214258 - AluJb SINE Alu -30 282 136 2317 107 0 3 chr12 8068269 8068579 -136213910 + AluSg1 SINE Alu 1 309 0 203 213 43 0 chr12 8069000 8069047 -136213442 + MIR SINE MIR 183 231 -31 2258 106 20 0 chr12 8069139 8069440 -136213049 - AluSx SINE Alu -4 308 2 2209 100 28 0 chr12 8069488 8069779 -136212710 - AluSg1 SINE Alu -10 299 1 1120 120 0 6 chr12 8070153 8070311 -136212178 - AluSx SINE Alu -12 298 142 2291 98 3 13 chr12 8070332 8070638 -136211851 - AluSg SINE Alu -7 303 1 474 31 0 0 chr12 8070661 8070726 -136211763 - MER41A LTR ERV1 -88 466 402 937 111 37 0 chr12 8070726 8070861 -136211628 - AluSx SINE Alu -173 140 1 1287 97 11 27 chr12 8071272 8071457 -136211032 + AluSg/x SINE Alu 128 309 -1 551 263 99 7 chr12 8071460 8071612 -136210877 + AluJo/FRAM SINE Alu 137 302 0 957 102 0 38 chr12 8071613 8071716 -136210773 + (GAAA)n Simple_repeat Simple_repeat 1 278 0 957 102 0 38 chr12 8071716 8071902 -136210587 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 623 133 62 47 chr12 8072366 8072494 -136209995 + FLAM_A SINE Alu 1 130 -3 2082 118 3 10 chr12 8072925 8073238 -136209251 - AluY SINE Alu 0 311 1 2061 121 3 0 chr12 8073243 8073541 -136208948 - AluSx SINE Alu -13 299 1 1082 107 0 0 chr12 8073725 8073875 -136208614 + AluSq/x SINE Alu 1 150 -162 195 42 0 0 chr12 8073889 8073913 -136208576 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 2039 114 17 0 chr12 8073970 8074268 -136208221 - AluSx SINE Alu -9 303 1 1974 121 0 0 chr12 8074444 8074746 -136207743 - AluSx SINE Alu 0 302 1 2126 91 10 0 chr12 8074981 8075279 -136207210 - AluSp SINE Alu -12 301 1 2083 128 0 0 chr12 8075315 8075619 -136206870 - AluSx SINE Alu -8 304 1 25 0 0 0 chr12 8075665 8075690 -136206799 + AT_rich Low_complexity Low_complexity 1 25 0 650 185 0 52 chr12 8075876 8076011 -136206478 + FLAM_A SINE Alu 1 128 -5 2306 60 7 13 chr12 8076031 8076332 -136206157 - AluY SINE Alu -10 301 3 776 180 60 80 chr12 8076478 8076678 -136205811 - MER21A LTR ERV1 0 931 736 483 124 0 56 chr12 8076868 8076957 -136205532 + AluS SINE Alu 222 305 -4 2479 62 0 0 chr12 8077155 8077459 -136205030 + AluY SINE Alu 1 304 -7 1074 277 89 53 chr12 8077469 8078054 -136204435 - L2 LINE L2 -771 2543 1938 1647 158 0 7 chr12 8078055 8078376 -136204113 + AluSx SINE Alu 1 319 0 513 171 48 9 chr12 8078438 8078543 -136203946 - AluSx SINE Alu -4 308 200 966 129 0 7 chr12 8078547 8078694 -136203795 - AluSx SINE Alu -166 146 1 2119 129 0 0 chr12 8078695 8079006 -136203483 - AluSx SINE Alu 0 312 2 393 254 42 117 chr12 8079020 8079260 -136203229 - L2 LINE L2 -1395 1919 1698 523 159 11 11 chr12 8079284 8079372 -136203117 + AluS SINE Alu 2 89 -224 789 212 18 0 chr12 8079441 8079606 -136202883 - L1MB7 LINE L1 -146 6038 5871 700 146 0 32 chr12 8079615 8079738 -136202751 - AluJ SINE Alu -3 309 191 893 146 0 0 chr12 8079742 8079879 -136202610 - AluJ SINE Alu -175 137 1 535 159 37 0 chr12 8079881 8079988 -136202501 - L1MB7 LINE L1 -306 5878 5768 241 114 136 0 chr12 8079995 8080039 -136202450 - L1MB7 LINE L1 -553 5631 5582 * 975 222 36 14 chr12 8080018 8080293 -136202196 - L1M4 LINE L1 -2210 3936 3656 390 125 31 0 chr12 8080294 8080358 -136202131 + MLT2C1 LTR ERVL 1 66 -331 2162 80 0 46 chr12 8080373 8080698 -136201791 - AluY SINE Alu -1 310 1 431 89 0 0 chr12 8080704 8080760 -136201729 - AluSp SINE Alu -17 293 238 260 111 37 74 chr12 8080763 8080817 -136201672 - AluSp SINE Alu -133 170 119 * 368 211 138 0 chr12 8080799 8080908 -136201581 + MLT2C1 LTR ERVL 74 197 -200 1103 148 0 0 chr12 8081014 8081190 -136201299 - AluSg/x SINE Alu 0 310 135 2144 101 3 0 chr12 8081193 8081481 -136201008 - AluSx SINE Alu -15 297 9 1544 95 0 5 chr12 8081481 8081692 -136200797 - AluSc SINE Alu -99 210 1 328 294 14 28 chr12 8081906 8082049 -136200440 + GA-rich Low_complexity Low_complexity 4 144 0 2301 68 3 0 chr12 8082484 8082776 -136199713 - AluSp SINE Alu -18 295 3 2327 43 3 0 chr12 8083080 8083385 -136199104 - AluY SINE Alu 0 306 1 23 78 0 0 chr12 8083422 8083473 -136199016 + AT_rich Low_complexity Low_complexity 1 51 0 2148 113 0 0 chr12 8083485 8083785 -136198704 - AluSx SINE Alu -10 302 3 456 252 9 9 chr12 8083852 8083963 -136198526 - MER70B LTR ERVL -11 567 457 2158 80 10 3 chr12 8084154 8084443 -136198046 - AluY SINE Alu -20 291 1 1898 145 20 0 chr12 8084443 8084740 -136197749 - AluSx SINE Alu -5 307 5 786 187 0 8 chr12 8084988 8085122 -136197367 - FLAM_A SINE Alu 0 133 1 1921 100 6 85 chr12 8085286 8085616 -136196873 + AluSq SINE Alu 1 304 -9 703 172 15 22 chr12 8085638 8085772 -136196717 - FLAM_C SINE Alu -4 139 7 300 291 13 76 chr12 8085819 8085977 -136196512 + L1ME4a LINE L1 5974 6121 0 2118 131 0 0 chr12 8085986 8086299 -136196190 + AluSq SINE Alu 1 313 0 957 168 11 173 chr12 8086468 8086687 -136195802 - AluSc SINE Alu -9 300 160 2304 75 3 0 chr12 8086687 8086981 -136195508 - AluSp SINE Alu -16 297 3 957 168 11 173 chr12 8086981 8087119 -136195370 - AluSc SINE Alu -149 160 1 1125 333 42 15 chr12 8087186 8087744 -136194745 + L2 LINE L2 2739 3309 -4 2016 125 0 7 chr12 8087762 8088066 -136194423 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr12 8088068 8088089 -136194400 + AT_rich Low_complexity Low_complexity 1 21 0 1652 124 4 4 chr12 8088138 8088388 -136194101 - AluSp SINE Alu -15 298 49 1004 92 0 0 chr12 8088395 8088525 -136193964 - AluSq/x SINE Alu -183 130 1 2141 104 0 0 chr12 8089102 8089400 -136193089 - AluSp SINE Alu -15 298 1 611 129 95 17 chr12 8089401 8089517 -136192972 - L1MC2 LINE L1 -517 5827 5703 1888 115 7 0 chr12 8089519 8089807 -136192682 + AluSx SINE Alu 1 290 -22 967 206 122 5 chr12 8089810 8090024 -136192465 + MLT1A1 LTR MaLR 48 286 -79 1144 162 16 0 chr12 8090026 8090217 -136192272 + L1M2 LINE L1 5496 5689 -623 1590 117 0 21 chr12 8090232 8090331 -136192158 + AluSq SINE Alu 39 139 -174 2037 128 0 3 chr12 8090331 8090637 -136191852 + AluSx SINE Alu 1 305 -7 1590 117 0 21 chr12 8090637 8090776 -136191713 + AluSq SINE Alu 139 272 -41 1952 120 13 25 chr12 8090813 8091129 -136191360 + AluSp SINE Alu 1 312 -1 23 54 0 0 chr12 8091145 8091182 -136191307 + AT_rich Low_complexity Low_complexity 1 37 0 408 167 0 0 chr12 8091225 8091297 -136191192 - AluSx SINE Alu -2 310 239 503 108 0 0 chr12 8091425 8091490 -136190999 + pTR5 LTR ERV1 326 390 -2048 1515 155 4 0 chr12 8091490 8091729 -136190760 - AluSx SINE Alu -72 240 1 266 115 0 115 chr12 8091802 8091841 -136190648 - AluSp SINE Alu -131 172 139 2064 142 0 0 chr12 8091841 8092144 -136190345 - AluSx SINE Alu -9 303 1 266 115 0 115 chr12 8092144 8092156 -136190333 - AluSp SINE Alu -164 139 127 2068 116 0 0 chr12 8092180 8092472 -136190017 - AluSg SINE Alu -18 292 1 1636 190 45 25 chr12 8092483 8092836 -136189653 + MLT1B-int LTR MaLR 1371 1730 -5 2113 155 34 16 chr12 8092842 8093223 -136189266 + MLT1B LTR MaLR 1 388 -2 928 298 143 41 chr12 8093224 8093723 -136188766 - L2 LINE L2 -157 3156 2709 849 244 44 131 chr12 8093723 8093878 -136188611 + MSTD LTR MaLR 1 168 -228 1719 113 0 113 chr12 8093878 8094215 -136188274 + AluJo SINE Alu 1 299 -13 849 244 44 131 chr12 8094215 8094453 -136188036 + MSTD LTR MaLR 168 355 -41 2243 94 0 19 chr12 8094453 8094772 -136187717 - AluSq SINE Alu 0 313 1 849 244 44 131 chr12 8094772 8094811 -136187678 + MSTD LTR MaLR 355 396 0 928 298 143 41 chr12 8094811 8095051 -136187438 - L2 LINE L2 -604 2709 2328 3402 123 94 62 chr12 8095205 8095336 -136187153 - L1MC2 LINE L1 -9 6335 6210 197 62 0 31 chr12 8095336 8095368 -136187121 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1867 122 0 0 chr12 8095377 8095647 -136186842 - AluSx SINE Alu -42 270 1 3402 123 94 62 chr12 8095647 8095812 -136186677 - L1MC2 LINE L1 -141 6203 6045 2089 114 10 0 chr12 8095812 8096111 -136186378 + AluSq SINE Alu 1 302 -11 3402 123 94 62 chr12 8096111 8096497 -136185992 - L1MC2 LINE L1 -299 6045 5620 294 29 0 0 chr12 8096521 8096555 -136185934 - U2 snRNA snRNA -152 36 3 2360 80 3 0 chr12 8096802 8097114 -136185375 - AluSp SINE Alu 0 313 1 684 86 11 0 chr12 8097114 8097207 -136185282 - L1MA1 LINE L1 -45 6257 6164 1338 244 81 50 chr12 8098103 8098599 -136183890 - L1ME3 LINE L1 -31 6131 5621 2045 120 3 0 chr12 8098630 8098922 -136183567 - AluSx SINE Alu -19 293 1 264 338 47 37 chr12 8098967 8099199 -136183290 - MIR3 SINE MIR -25 237 6 325 157 100 14 chr12 8099228 8099298 -136183191 - MER81 DNA DNA -3 111 36 497 149 5 234 chr12 8099509 8099584 -136182905 + MER5A DNA MER1_type 2 92 -97 2426 66 0 0 chr12 8099584 8099885 -136182604 + AluY SINE Alu 1 301 -10 497 149 5 234 chr12 8099885 8099896 -136182593 + MER5A DNA MER1_type 92 104 -85 1586 164 4 4 chr12 8099896 8100177 -136182312 + AluJb SINE Alu 1 281 -31 186 43 0 0 chr12 8100182 8100205 -136182284 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 497 149 5 234 chr12 8100205 8100312 -136182177 + MER5A DNA MER1_type 108 156 -33 209 284 45 30 chr12 8100589 8100656 -136181833 - L3 LINE CR1 -431 1146 1079 2306 81 0 0 chr12 8100721 8101017 -136181472 - AluSx SINE Alu -16 296 1 1453 88 0 19 chr12 8101190 8101405 -136181084 + AluSg/x SINE Alu 97 307 -5 448 123 37 12 chr12 8101425 8101506 -136180983 + AluSg/x SINE Alu 215 297 -12 22 0 0 0 chr12 8101594 8101616 -136180873 + AT_rich Low_complexity Low_complexity 1 22 0 1284 132 0 0 chr12 8101640 8101822 -136180667 - AluSx SINE Alu -130 182 1 2161 93 3 13 chr12 8102103 8102416 -136180073 - AluSx SINE Alu 0 312 3 3731 188 46 73 chr12 8102563 8103520 -136178969 - MER21A LTR ERV1 0 931 1 2112 96 4 0 chr12 8103982 8104287 -136178202 - AluSp SINE Alu 0 306 1 1521 165 0 86 chr12 8104401 8104534 -136177955 + AluJo SINE Alu 1 144 -168 1922 148 0 3 chr12 8104534 8104844 -136177645 - AluSx SINE Alu -3 309 1 1521 165 0 86 chr12 8104844 8105049 -136177440 + AluJo SINE Alu 144 310 -2 456 93 0 0 chr12 8105408 8105483 -136177006 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1617 99 119 0 chr12 8105483 8105736 -136176753 - AluSc SINE Alu -26 283 1 1172 142 31 62 chr12 8105951 8106113 -136176376 + Tigger5 DNA MER2_type 2072 2225 -98 2327 86 3 0 chr12 8106113 8106416 -136176073 - AluSp SINE Alu -9 304 1 1172 142 31 62 chr12 8106416 8106513 -136175976 + Tigger5 DNA MER2_type 2225 2323 0 970 183 83 121 chr12 8106513 8106604 -136175885 + L1ME2 LINE L1 5236 5329 -833 1959 127 0 3 chr12 8106604 8106888 -136175601 + AluSq SINE Alu 1 283 -30 970 183 83 121 chr12 8106888 8107179 -136175310 + L1ME2 LINE L1 5329 5603 -559 831 168 0 8 chr12 8107182 8107313 -136175176 + FLAM_C SINE Alu 1 130 -13 1112 211 21 28 chr12 8107314 8107597 -136174892 + L1ME2 LINE L1 5581 5864 -298 431 19 0 0 chr12 8107605 8107657 -136174832 + AluSq/x SINE Alu 82 133 -179 753 198 46 72 chr12 8107699 8107857 -136174632 + L1ME2 LINE L1 5871 6023 -141 1997 139 0 10 chr12 8107857 8108167 -136174322 + AluSx SINE Alu 1 307 -5 753 198 46 72 chr12 8108167 8108245 -136174244 + L1ME2 LINE L1 6023 6101 -63 2201 196 70 15 chr12 8108483 8108953 -136173536 - MLT1D LTR MaLR -2 503 8 1880 135 10 0 chr12 8108953 8109256 -136173233 - AluSx SINE Alu -6 306 1 2304 87 0 0 chr12 8109677 8109975 -136172514 + AluSq SINE Alu 1 298 -15 2330 80 0 3 chr12 8110294 8110596 -136171893 + AluSq SINE Alu 1 301 -12 186 43 0 0 chr12 8110639 8110662 -136171827 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 486 0 0 0 chr12 8111082 8111136 -136171353 + (TG)n Simple_repeat Simple_repeat 2 55 0 2134 110 0 0 chr12 8111291 8111590 -136170899 + AluSx SINE Alu 1 299 -13 687 188 0 43 chr12 8111828 8111966 -136170523 - FLAM_C SINE Alu -1 132 1 1697 143 49 0 chr12 8111969 8112256 -136170233 - AluJo SINE Alu -11 301 1 273 325 121 24 chr12 8112439 8112645 -136169844 - L2 LINE L2 -496 2818 2593 2110 108 7 0 chr12 8112734 8113031 -136169458 + AluSp SINE Alu 1 299 -14 780 273 47 17 chr12 8113930 8114238 -136168251 + L2 LINE L2 2739 3070 -243 2161 107 0 16 chr12 8114281 8114589 -136167900 - AluSx SINE Alu -9 303 1 1589 168 23 23 chr12 8114592 8114783 -136167706 - AluJo SINE Alu -2 310 117 192 40 0 0 chr12 8114783 8114808 -136167681 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1589 168 23 23 chr12 8114808 8114926 -136167563 - AluJo SINE Alu -194 118 1 362 21 21 0 chr12 8115361 8115408 -136167081 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 2108 125 8 64 chr12 8115456 8115663 -136166826 - L1PA16 LINE L1 -3 6163 5987 2215 80 0 41 chr12 8115663 8115977 -136166512 - AluY SINE Alu -10 301 1 2108 125 8 64 chr12 8115977 8116161 -136166328 - L1PA16 LINE L1 -179 5987 5794 1932 109 20 7 chr12 8116170 8116464 -136166025 - AluSx SINE Alu -14 298 1 662 90 0 10 chr12 8116475 8116575 -136165914 + (TTCC)n Simple_repeat Simple_repeat 1 99 0 2087 107 3 0 chr12 8116575 8116865 -136165624 - AluSg SINE Alu -19 291 1 2347 77 0 0 chr12 8116891 8117201 -136165288 - AluY SINE Alu -1 310 1 996 113 0 134 chr12 8117202 8117440 -136165049 - L1MC/D LINE L1 -628 5614 5409 198 0 0 0 chr12 8117493 8117515 -136164974 + (TG)n Simple_repeat Simple_repeat 1 22 0 270 56 0 0 chr12 8117530 8117566 -136164923 + (TA)n Simple_repeat Simple_repeat 2 37 0 2502 65 3 0 chr12 8117566 8117876 -136164613 - AluSp SINE Alu -2 311 1 23 33 0 0 chr12 8117876 8117906 -136164583 + AT_rich Low_complexity Low_complexity 1 30 0 1937 109 60 0 chr12 8117917 8118201 -136164288 - AluSp SINE Alu -12 301 1 1900 135 0 0 chr12 8118525 8118854 -136163635 + AluSx SINE Alu 1 329 0 32 43 0 0 chr12 8118959 8119005 -136163484 + AT_rich Low_complexity Low_complexity 1 46 0 1522 180 0 11 chr12 8119006 8119290 -136163199 - AluJb SINE Alu -23 289 9 353 75 19 0 chr12 8119807 8119860 -136162629 + (CA)n Simple_repeat Simple_repeat 2 55 0 710 335 11 27 chr12 8120073 8120336 -136162153 - MIR SINE MIR -2 260 2 788 164 0 8 chr12 8120751 8120885 -136161604 + FLAM_C SINE Alu 1 133 0 1386 213 37 0 chr12 8120902 8121178 -136161311 - AluJo SINE Alu -30 282 5 2288 97 10 13 chr12 8121352 8121660 -136160829 - AluSx SINE Alu -5 307 1 2305 93 3 7 chr12 8121662 8121962 -136160527 - AluSq SINE Alu -14 299 1 1143 99 0 47 chr12 8122344 8122516 -136159973 + FRAM SINE Alu 1 163 -13 203 306 0 0 chr12 8122532 8122594 -136159895 + CT-rich Low_complexity Low_complexity 4 65 0 706 204 8 0 chr12 8123263 8123395 -136159094 + FLAM_A SINE Alu 1 133 0 2201 110 0 7 chr12 8123659 8123979 -136158510 + AluSg SINE Alu 1 310 0 21 0 0 0 chr12 8124199 8124220 -136158269 + AT_rich Low_complexity Low_complexity 1 21 0 1581 175 50 27 chr12 8124631 8124767 -136157722 + AluJo SINE Alu 1 132 -180 2473 25 0 7 chr12 8124767 8125091 -136157398 + AluY SINE Alu 1 322 0 1581 175 50 27 chr12 8125091 8125250 -136157239 + AluJo SINE Alu 132 304 -8 2474 51 10 0 chr12 8125259 8125555 -136156934 - AluY SINE Alu -12 299 1 695 215 126 0 chr12 8126017 8126152 -136156337 + FRAM SINE Alu 1 151 -25 871 150 23 0 chr12 8126155 8126288 -136156201 + AluJo SINE Alu 1 136 -176 197 62 0 31 chr12 8126293 8126325 -136156164 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 199 175 16 16 chr12 8126428 8126462 -136156027 + (TTA)n Simple_repeat Simple_repeat 1 37 -26 886 212 0 41 chr12 8126462 8126632 -136155857 - FAM SINE Alu -12 163 1 199 175 16 16 chr12 8126632 8126660 -136155829 + (TTA)n Simple_repeat Simple_repeat 36 63 0 1893 142 0 41 chr12 8126772 8127088 -136155401 + AluJb SINE Alu 1 303 -9 23 0 0 0 chr12 8127132 8127155 -136155334 + AT_rich Low_complexity Low_complexity 1 23 0 1740 198 3 15 chr12 8127430 8127754 -136154735 - MLT1F LTR MaLR -25 517 198 831 159 0 0 chr12 8127773 8127899 -136154590 - FLAM_C SINE Alu -17 126 1 721 267 5 26 chr12 8127899 8128090 -136154399 - MLT1F LTR MaLR -341 201 15 462 74 12 86 chr12 8128252 8128333 -136154156 + MER52C LTR ERV1 952 1026 -252 * 816 155 115 104 chr12 8128332 8128524 -136153965 - LTR56 LTR ERV1 -164 281 84 2543 58 0 3 chr12 8128524 8128833 -136153656 - AluY SINE Alu -3 308 1 816 155 115 104 chr12 8128833 8128918 -136153571 - LTR56 LTR ERV1 -361 84 1 2326 89 0 0 chr12 8129094 8129385 -136153104 + AluSq SINE Alu 1 291 -22 185 0 40 0 chr12 8129389 8129414 -136153075 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 341 214 0 125 chr12 8129422 8129534 -136152955 + MER61E LTR ERV1 4 101 -468 536 141 0 0 chr12 8130247 8130325 -136152164 + MSTB LTR MaLR 1 78 -348 2993 179 60 24 chr12 8130326 8130941 -136151548 - LTR9B LTR ERV1 -1 643 7 1280 213 2 11 chr12 8130941 8131214 -136151275 - HUERS-P3 LTR ERV1 0 8919 7158 792 178 26 36 chr12 8131518 8131727 -136150762 - HUERS-P3b LTR ERV1 -551 4329 1860 304 170 7 185 chr12 8131699 8131783 -136150706 - HUERS-P3b LTR ERV1 -462 6956 6903 * 2383 81 3 3 chr12 8131783 8132081 -136150408 - AluSp SINE Alu -15 298 1 304 170 7 185 chr12 8132081 8132131 -136150358 - HUERS-P3b LTR ERV1 -515 6903 6846 * 4209 190 37 5 chr12 8132121 8132869 -136149620 - HUERS-P3b LTR ERV1 -1986 6933 6162 * 4497 108 39 20 chr12 8132854 8133307 -136149182 - HUERS-P3b LTR ERV1 -3342 5577 5105 2334 77 10 0 chr12 8133307 8133607 -136148882 - AluY SINE Alu -8 303 1 4497 108 39 20 chr12 8133607 8133817 -136148672 - HUERS-P3b LTR ERV1 -3814 5105 4901 821 217 7 0 chr12 8133818 8133961 -136148528 - HUERS-P3b LTR ERV1 -4237 4682 4539 7647 150 33 14 chr12 8133964 8135034 -136147455 - HUERS-P3b LTR ERV1 -5314 2104 1834 2308 97 0 0 chr12 8135034 8135322 -136147167 - AluSc SINE Alu -21 288 1 7647 150 33 14 chr12 8135322 8135865 -136146624 - HUERS-P3b LTR ERV1 -5584 1834 1303 4217 145 155 27 chr12 8135873 8137233 -136145256 - pTR5 LTR ERV1 0 2438 741 2729 158 87 31 chr12 8137232 8137599 -136144890 - HUERS-P3b LTR ERV1 -7597 1322 912 * 2058 129 7 0 chr12 8137599 8137885 -136144604 - AluSg SINE Alu -22 288 1 2729 158 87 31 chr12 8137885 8138066 -136144423 - HUERS-P3b LTR ERV1 -8007 912 743 677 168 85 16 chr12 8138089 8138246 -136144243 - HUERS-P3b LTR ERV1 -6859 559 412 285 157 14 86 chr12 8138230 8138300 -136144189 - HUERS-P3b LTR ERV1 -8821 98 34 * 3010 168 76 25 chr12 8138324 8138931 -136143558 - LTR9B LTR ERV1 0 644 7 1570 159 159 3 chr12 8138940 8139242 -136143247 + MSTB LTR MaLR 78 426 0 271 62 0 42 chr12 8139499 8139547 -136142942 + (TAAAG)n Simple_repeat Simple_repeat 2 47 0 2121 130 0 0 chr12 8139610 8139903 -136142586 - AluSg SINE Alu -15 295 3 1751 327 74 26 chr12 8139903 8140298 -136142191 - L2 LINE L2 -293 3020 2645 6008 63 20 14 chr12 8140298 8140740 -136141749 + MER4E LTR ERV1 1 450 -316 2306 105 0 0 chr12 8140740 8141034 -136141455 - AluSx SINE Alu -18 294 1 6008 63 20 14 chr12 8141034 8141349 -136141140 + MER4E LTR ERV1 450 762 -4 1751 327 74 26 chr12 8141349 8141942 -136140547 - L2 LINE L2 -668 2645 1988 2373 76 0 28 chr12 8142236 8142553 -136139936 - AluY SINE Alu -2 309 2 2555 77 21 0 chr12 8142556 8142882 -136139607 - L1PA13 LINE L1 -4 6159 5827 631 211 0 8 chr12 8142882 8143003 -136139486 + L1MA4 LINE L1 6169 6300 0 265 359 98 38 chr12 8143257 8143544 -136138945 - L2 LINE L2 -4 3268 2965 7805 171 37 9 chr12 8143546 8145610 -136136879 + L1PB4 LINE L1 3710 5842 -314 2405 88 16 0 chr12 8145610 8145915 -136136574 + AluSx SINE Alu 1 310 -2 7805 171 37 9 chr12 8145915 8146131 -136136358 + L1PB4 LINE L1 5842 6051 -105 271 125 21 0 chr12 8146147 8146195 -136136294 + L1PA16 LINE L1 6101 6149 -17 250 352 117 20 chr12 8146195 8146391 -136136098 - L2 LINE L2 -186 3086 2872 1204 251 78 6 chr12 8146494 8146853 -136135636 + L1MC4a LINE L1 5538 5922 -1886 2456 81 3 0 chr12 8147350 8147657 -136134832 - AluSc SINE Alu -1 308 1 632 153 178 31 chr12 8147830 8147993 -136134496 + MER53 DNA DNA 1 187 -2 618 95 0 0 chr12 8148099 8148194 -136134295 + (CGG)n Simple_repeat Simple_repeat 3 97 0 391 289 0 0 chr12 8148487 8148577 -136133912 - MIR SINE MIR -126 136 47 1155 108 0 0 chr12 8148578 8148744 -136133745 + AluSg/x SINE Alu 137 302 -10 294 120 100 0 chr12 8148744 8148794 -136133695 + Alu SINE Alu 236 290 -12 321 304 104 52 chr12 8149421 8149671 -136132818 + L1MEd LINE L1 961 1223 -4896 1155 218 97 7 chr12 8149756 8150236 -136132253 + L1ME LINE L1 5040 5557 -609 2168 97 3 17 chr12 8151048 8151346 -136131143 + AluSx SINE Alu 13 306 -6 3107 90 42 2 chr12 8151400 8151948 -136130541 + PABL_A LTR ERV1 1 655 -5 1144 283 70 15 chr12 8152520 8152990 -136129499 - L1ME3A LINE L1 -1 6169 5674 700 140 0 0 chr12 8152993 8153093 -136129396 - LTR12 LTR ERV1 0 714 615 312 253 10 10 chr12 8153096 8153195 -136129294 - LTR30 LTR ERV1 -80 642 544 1238 109 153 52 chr12 8153200 8153448 -136129041 - LTR12 LTR ERV1 -441 273 1 933 239 60 28 chr12 8153455 8153834 -136128655 - L1ME3A LINE L1 -612 5552 5156 2026 126 49 0 chr12 8153834 8154119 -136128370 + AluSq SINE Alu 1 299 -14 933 239 60 28 chr12 8154119 8154265 -136128224 - L1ME3A LINE L1 -1008 5156 5016 3423 208 80 6 chr12 8154272 8155178 -136127311 - L1ME1 LINE L1 -3 6163 5195 249 159 0 0 chr12 8156162 8156206 -136126283 + L1PA10 LINE L1 6121 6164 -4 39 22 0 0 chr12 8156585 8156631 -136125858 + AT_rich Low_complexity Low_complexity 1 46 0 2363 95 0 3 chr12 8158039 8158344 -136124145 - AluSg SINE Alu -6 304 1 270 295 91 39 chr12 8158430 8158658 -136123831 - L1ME LINE L1 -403 5759 5519 324 228 38 156 chr12 8158871 8159160 -136123329 + MER112 DNA MER1_type 1 255 -5 38 61 0 0 chr12 8159181 8159247 -136123242 + AT_rich Low_complexity Low_complexity 1 66 0 1535 128 173 0 chr12 8160202 8160451 -136122038 + AluSg SINE Alu 3 294 -16 802 256 106 8 chr12 8160507 8160752 -136121737 - MER82 DNA MER2_type 0 653 385 453 58 4 29 chr12 8160752 8160835 -136121654 - MLT2A1 LTR ERVL 0 453 368 1271 92 52 0 chr12 8160951 8161125 -136121364 - MLT2A1 LTR ERVL -40 404 222 1130 201 14 5 chr12 8161126 8161335 -136121154 - MER82 DNA MER2_type -264 389 179 1658 185 71 3 chr12 8161355 8161707 -136120782 - L1MA9 LINE L1 -1 6311 5936 893 110 43 0 chr12 8161711 8161875 -136120614 + CT-rich Low_complexity Low_complexity 1 171 0 746 134 8 0 chr12 8161875 8162002 -136120487 + (TCCC)n Simple_repeat Simple_repeat 4 131 0 1394 109 0 5 chr12 8162004 8162196 -136120293 - AluSg/x SINE Alu -40 270 80 17628 214 26 17 chr12 8162264 8163252 -136119237 - L1P4 LINE L1 -466 6350 5373 186 71 0 0 chr12 8163252 8163280 -136119209 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 17628 214 26 17 chr12 8163280 8164243 -136118246 - L1P4 LINE L1 -1443 5373 4420 546 70 0 93 chr12 8164243 8164276 -136118213 + MADE1 DNA Mariner 1 35 -45 1954 149 14 0 chr12 8164276 8164289 -136118200 - AluSx SINE Alu -13 299 288 708 64 0 0 chr12 8164289 8164383 -136118106 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 1954 149 14 0 chr12 8164383 8164664 -136117825 - AluSx SINE Alu -24 288 1 546 70 0 93 chr12 8164664 8164716 -136117773 + MADE1 DNA Mariner 35 78 -2 17628 214 26 17 chr12 8164716 8165495 -136116994 - L1P4 LINE L1 -2396 4420 3650 2378 93 0 10 chr12 8165495 8165796 -136116693 - AluSc SINE Alu -11 298 1 17628 214 26 17 chr12 8165796 8168583 -136113906 - L1P4 LINE L1 -3166 3650 775 2384 158 80 22 chr12 8168579 8168717 -136113772 - L1P4 LINE L1 -380 5786 5658 * 1762 85 0 5 chr12 8168717 8168941 -136113548 - AluY SINE Alu -9 302 80 2384 158 80 22 chr12 8168941 8169264 -136113225 - L1P4 LINE L1 -508 5658 5298 835 138 0 0 chr12 8170050 8170173 -136112316 - AluSp/q SINE Alu -12 301 179 1530 132 0 9 chr12 8170173 8170392 -136112097 - AluSx SINE Alu -93 219 3 398 130 0 26 chr12 8170797 8170874 -136111615 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 1377 331 8 15 chr12 8171016 8171608 -136110881 - MER21A-int LTR ERV1 -128 6521 5934 711 291 49 61 chr12 8172616 8173236 -136109253 - MER21A-int LTR ERV1 -729 7056 3365 349 314 8 8 chr12 8173639 8173763 -136108726 - MER21A-int LTR ERV1 -3744 3152 3029 2086 153 0 0 chr12 8173942 8174243 -136108246 - AluSx SINE Alu -11 301 1 206 265 0 0 chr12 8174247 8174296 -136108193 + T-rich Low_complexity Low_complexity 1 49 0 2396 342 29 31 chr12 8174305 8176373 -136106116 - MER21A-int LTR ERV1 -2029 5756 2864 362 341 0 0 chr12 8176386 8176521 -136105968 - MER21A-int LTR ERV1 -4160 3625 3491 32178 113 12 53 chr12 8176545 8182955 -136099534 - L1PA7 LINE L1 0 6154 12 1715 323 41 36 chr12 8183276 8185281 -136097208 - MER21A-int LTR ERV1 -4395 3390 954 207 0 0 0 chr12 8185651 8185674 -136096815 + (TCTCCC)n Simple_repeat Simple_repeat 1 23 0 8285 20 1 320 chr12 8185679 8187710 -136094779 + SVA Other Other 2 1383 -3 280 310 82 6 chr12 8188007 8188178 -136094311 - MER21A-int LTR ERV1 -6279 370 187 12026 247 21 21 chr12 8188794 8192303 -136090186 - L1P LINE L1 -950 5196 1686 2224 122 10 124 chr12 8192316 8192823 -136089666 - LTR10A LTR ERV1 -160 449 1 359 299 0 0 chr12 8193005 8193102 -136089387 - L1PA12 LINE L1 -5399 1446 1350 550 354 23 34 chr12 8193350 8193835 -136088654 - L1M2 LINE L1 -6317 521 3 2798 199 41 26 chr12 8193837 8194910 -136087579 - MER21A-int LTR ERV1 -2565 4193 163 280 167 42 0 chr12 8194930 8194978 -136087511 - MER21A-int LTR ERV1 -4141 50 1 2225 198 22 86 chr12 8195012 8195893 -136086596 - MER21A LTR ERV1 -17 914 1 349 323 19 19 chr12 8195897 8196079 -136086410 - L1M3de LINE L1 -5038 1615 1434 2452 78 0 0 chr12 8196230 8196526 -136085963 - AluY SINE Alu -14 297 2 3543 84 63 6 chr12 8196555 8197045 -136085444 - MER11A LTR ERVK -748 518 1 2105 215 0 35 chr12 8197046 8197535 -136084954 + L1 LINE L1 2398 2869 -3277 2335 114 47 33 chr12 8197558 8197917 -136084572 + THE1B LTR MaLR 1 364 0 2286 152 3 8 chr12 8197917 8198280 -136084209 + L1PB3 LINE L1 5794 6154 0 418 276 10 0 chr12 8198330 8198428 -136084061 + ERVL LTR ERVL 2186 2284 -3480 298 161 0 0 chr12 8198575 8198631 -136083858 - L1MB8 LINE L1 0 6178 6123 * 850 177 25 0 chr12 8198630 8198788 -136083701 + L1 LINE L1 3652 3813 -2333 720 215 71 11 chr12 8199122 8199498 -136082991 - L1MB8 LINE L1 -42 6136 5677 * 1320 291 63 30 chr12 8199497 8200368 -136082121 - L1M4c LINE L1 -3451 2931 2021 880 224 14 14 chr12 8200381 8200595 -136081894 - L1MB8 LINE L1 -1366 4780 4567 * 2236 203 35 18 chr12 8200593 8201319 -136081170 - L1MCb LINE L1 -4851 1194 600 1416 239 82 72 chr12 8201306 8201900 -136080589 - L1MCb LINE L1 -5821 743 144 * 2146 113 0 26 chr12 8202125 8202436 -136080053 - AluSc SINE Alu -6 303 1 561 272 75 8 chr12 8202665 8202904 -136079585 - Tigger8 DNA MER2_type -200 466 212 369 0 0 0 chr12 8204122 8204163 -136078326 + (CA)n Simple_repeat Simple_repeat 2 42 0 3611 113 19 2 chr12 8204348 8204869 -136077620 - L1MA1 LINE L1 0 6302 5773 408 293 108 81 chr12 8205455 8206206 -136076283 - HAL1 LINE L1 -681 1826 1056 4754 196 33 37 chr12 8207314 8208801 -136073688 - L1MA9 LINE L1 -36 6276 4793 2293 98 3 13 chr12 8208801 8209116 -136073373 - AluSx SINE Alu 0 312 1 4754 196 33 37 chr12 8209116 8209311 -136073178 - L1MA9 LINE L1 -1519 4793 4599 2767 114 5 18 chr12 8210996 8211389 -136071100 - L1PA8A LINE L1 -13 6118 5731 11471 41 6 0 chr12 8211476 8213561 -136068928 - L1PA5 LINE L1 0 6154 4064 2174 107 0 0 chr12 8213716 8214020 -136068469 + AluSg SINE Alu 1 304 0 21 36 0 0 chr12 8214986 8215014 -136067475 + AT_rich Low_complexity Low_complexity 1 28 0 2231 107 3 0 chr12 8216454 8216752 -136065737 + AluSq SINE Alu 1 299 -14 879 140 48 131 chr12 8216961 8217060 -136065429 + MER2 DNA MER2_type 1 72 -273 2221 108 0 0 chr12 8217060 8217346 -136065143 + AluSc SINE Alu 3 288 -21 879 140 48 131 chr12 8217346 8217475 -136065014 + MER2 DNA MER2_type 72 210 -135 2377 57 3 13 chr12 8217581 8217881 -136064608 + AluY SINE Alu 1 297 -14 1000 166 25 0 chr12 8217883 8218040 -136064449 + AluJb SINE Alu 136 296 -16 433 255 59 0 chr12 8218101 8218203 -136064286 - FLAM_A SINE Alu -30 112 5 1956 131 7 0 chr12 8218239 8218530 -136063959 - AluSx SINE Alu -19 293 1 1996 146 0 0 chr12 8218653 8218947 -136063542 + AluSp SINE Alu 1 294 -19 900 146 0 0 chr12 8218947 8219077 -136063412 + AluJo/FRAM SINE Alu 134 263 -49 1613 156 0 77 chr12 8219115 8219441 -136063048 + AluJo SINE Alu 12 312 0 22 70 0 0 chr12 8219466 8219509 -136062980 + AT_rich Low_complexity Low_complexity 1 43 0 2451 73 0 13 chr12 8219513 8219828 -136062661 + AluY SINE Alu 1 311 0 225 0 0 0 chr12 8219880 8219905 -136062584 + (T)n Simple_repeat Simple_repeat 1 25 0 2386 76 0 13 chr12 8220010 8220314 -136062175 + AluY SINE Alu 1 300 -11 316 300 131 38 chr12 8220338 8220628 -136061861 + L1ME LINE L1 319 635 -5435 2200 67 3 63 chr12 8220999 8221314 -136061175 + AluSc SINE Alu 1 296 -13 206 323 73 10 chr12 8221748 8221844 -136060645 - L2 LINE L2 -516 2798 2697 186 0 0 39 chr12 8222220 8222246 -136060243 + (TTTTG)n Simple_repeat Simple_repeat 1 175 0 1798 140 4 4 chr12 8222246 8222525 -136059964 - AluSg SINE Alu -1 304 1 228 247 53 113 chr12 8222526 8222625 -136059864 - L1MC/D LINE L1 -1982 5826 5737 2113 112 10 0 chr12 8222625 8222929 -136059560 + AluSc SINE Alu 1 307 -2 228 247 53 113 chr12 8222929 8222979 -136059510 - L1MC/D LINE L1 -2071 5737 5686 193 244 186 35 chr12 8223129 8223215 -136059274 - MIR SINE MIR -111 151 53 1736 163 0 19 chr12 8223223 8223536 -136058953 - AluSx SINE Alu -5 307 1 1664 180 3 3 chr12 8223538 8223844 -136058645 - AluJb SINE Alu -6 306 1 2074 118 0 16 chr12 8224053 8224368 -136058121 - AluSg SINE Alu 0 310 1 1623 186 3 6 chr12 8224601 8224913 -136057576 - AluJo SINE Alu 0 312 2 372 220 96 0 chr12 8225086 8225192 -136057297 + L1MC4 LINE L1 6699 6795 -1166 1129 127 0 0 chr12 8225226 8225392 -136057097 + AluSq SINE Alu 130 295 -18 2106 82 4 4 chr12 8225392 8225706 -136056783 + AluSg SINE Alu 1 314 0 422 211 0 0 chr12 8225783 8225854 -136056635 + AluJ/FLAM SINE Alu 2 72 -230 1107 132 0 17 chr12 8225854 8226028 -136056461 - AluSq SINE Alu -142 171 1 1194 109 77 0 chr12 8226313 8226496 -136055993 + AluSg/x SINE Alu 103 299 -13 1997 111 11 0 chr12 8226496 8226803 -136055686 + AluSg SINE Alu 1 310 0 1256 171 0 38 chr12 8226969 8227208 -136055281 - AluJo SINE Alu -82 230 1 289 304 51 65 chr12 8227511 8227649 -136054840 + MIR SINE MIR 5 140 -122 1574 174 0 15 chr12 8227660 8227930 -136054559 + AluJo SINE Alu 1 266 -46 220 84 189 32 chr12 8227934 8228029 -136054460 + (TTTAA)n Simple_repeat Simple_repeat 1 110 0 1849 140 0 10 chr12 8228040 8228340 -136054149 + AluSq SINE Alu 1 297 -16 700 88 10 0 chr12 8228348 8228450 -136054039 + HY1 scRNA scRNA 3 105 -7 2037 117 10 0 chr12 8228574 8228864 -136053625 - AluSg SINE Alu -17 293 1 1870 133 30 0 chr12 8228932 8229234 -136053255 - AluSx SINE Alu -1 311 1 1683 152 28 0 chr12 8230430 8230719 -136051770 - AluSx SINE Alu -15 297 1 1418 217 14 0 chr12 8230862 8231157 -136051332 + AluJb SINE Alu 1 299 -13 1909 151 7 3 chr12 8231157 8231456 -136051033 + AluSq SINE Alu 1 300 -13 2000 111 7 3 chr12 8231460 8231749 -136050740 + AluSx SINE Alu 3 292 -20 2230 94 10 3 chr12 8231754 8232062 -136050427 + AluSg SINE Alu 1 310 0 1011 149 0 12 chr12 8232481 8232693 -136049796 - AluSq SINE Alu 0 329 120 2384 50 0 3 chr12 8233192 8233493 -136048996 + AluY SINE Alu 1 300 -11 1440 181 17 13 chr12 8234441 8234739 -136047750 + AluJb SINE Alu 1 299 -13 1560 110 0 13 chr12 8234769 8234996 -136047493 + AluSq SINE Alu 1 224 -89 445 114 0 0 chr12 8235051 8235121 -136047368 + Alu SINE Alu 239 308 -3 1989 109 10 14 chr12 8236135 8236429 -136046060 - AluSp SINE Alu -20 293 1 1976 111 17 3 chr12 8236619 8236916 -136045573 + AluSx SINE Alu 1 301 -11 27 0 0 0 chr12 8237025 8237052 -136045437 + AT_rich Low_complexity Low_complexity 1 27 0 1612 153 0 8 chr12 8237448 8237716 -136044773 + AluSx SINE Alu 46 311 -1 1428 216 10 10 chr12 8237769 8238065 -136044424 + AluJb SINE Alu 2 297 -5 21 0 0 0 chr12 8239679 8239700 -136042789 + AT_rich Low_complexity Low_complexity 1 21 0 2036 113 0 0 chr12 8239706 8239998 -136042491 + AluSx SINE Alu 1 292 -20 2036 115 0 16 chr12 8241272 8241576 -136040913 + AluSx SINE Alu 1 299 -13 1622 90 0 0 chr12 8241923 8242135 -136040354 + MER41A LTR ERV1 1 212 -342 257 138 0 17 chr12 8242280 8242338 -136040151 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 244 241 12 72 chr12 8242347 8242376 -136040113 + L2 LINE L2 3188 3217 -96 2222 84 3 7 chr12 8242376 8242674 -136039815 - AluSq SINE Alu -11 302 6 244 241 12 72 chr12 8242674 8242727 -136039762 + L2 LINE L2 3217 3265 -48 553 218 81 0 chr12 8242742 8242866 -136039623 + MER5A DNA MER1_type 28 161 -28 2196 95 7 10 chr12 8243336 8243642 -136038847 + AluSp SINE Alu 1 305 -8 593 152 10 0 chr12 8244310 8244409 -136038080 + HY1 scRNA scRNA 12 111 -1 1652 93 0 40 chr12 8244557 8244804 -136037685 + AluSg SINE Alu 1 237 -73 1830 117 18 0 chr12 8244837 8245110 -136037379 + AluSg SINE Alu 1 278 -32 868 100 6 25 chr12 8245110 8245270 -136037219 + (GAAA)n Simple_repeat Simple_repeat 1 157 0 488 213 50 100 chr12 8245274 8245335 -136037154 + MER58 DNA MER1_type 19 82 -2338 2341 75 7 0 chr12 8245335 8245642 -136036847 - AluSx SINE Alu -3 309 1 488 213 50 100 chr12 8245642 8245740 -136036749 + MER58 DNA MER1_type 81 170 -2250 186 43 0 0 chr12 8245748 8245771 -136036718 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 2063 120 3 0 chr12 8245788 8246097 -136036392 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr12 8246217 8246239 -136036250 + GC_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr12 8246690 8246725 -136035764 + AT_rich Low_complexity Low_complexity 1 35 0 1911 97 14 4 chr12 8247143 8247444 -136035045 + AluSg SINE Alu 1 304 0 771 171 0 0 chr12 8247723 8247852 -136034637 + AluJo/FLAM SINE Alu 3 131 -171 290 161 18 0 chr12 8247854 8247910 -136034579 + Alu SINE Alu 245 301 -1 330 306 69 35 chr12 8247922 8248066 -136034423 - MIR SINE MIR -77 185 37 442 189 33 0 chr12 8248420 8248510 -136033979 + L1MC3 LINE L1 7476 7568 -217 2032 98 20 3 chr12 8248518 8248814 -136033675 + AluSx SINE Alu 1 301 -11 334 171 24 12 chr12 8248928 8249010 -136033479 + L1MC3 LINE L1 7608 7690 -95 1919 115 25 0 chr12 8249013 8249291 -136033198 + AluSc SINE Alu 1 285 -24 2069 114 0 7 chr12 8249317 8249614 -136032875 + AluSq SINE Alu 1 295 -18 368 134 31 26 chr12 8249621 8249844 -136032645 + AluJo SINE Alu 3 301 0 314 119 0 0 chr12 8249920 8249962 -136032527 + Alu SINE Alu 1 42 -260 870 184 0 0 chr12 8250013 8250160 -136032329 + FRAM SINE Alu 1 142 -34 996 115 6 0 chr12 8250160 8250317 -136032172 - AluSg/x SINE Alu 0 310 153 334 171 24 12 chr12 8250528 8250610 -136031879 + L1MC3 LINE L1 7608 7690 -95 2042 116 10 0 chr12 8250613 8250907 -136031582 + AluSg SINE Alu 1 297 -13 2103 95 3 10 chr12 8250909 8251203 -136031286 + AluSg SINE Alu 3 294 -16 194 299 30 15 chr12 8251268 8251335 -136031154 + L3 LINE CR1 1079 1146 -431 25 0 0 0 chr12 8251504 8251529 -136030960 + AT_rich Low_complexity Low_complexity 1 25 0 879 108 0 15 chr12 8252195 8252325 -136030164 - AluSg/x SINE Alu -102 208 81 2325 73 0 7 chr12 8252325 8252626 -136029863 - AluY SINE Alu -12 299 1 23 0 0 0 chr12 8252911 8252934 -136029555 + AT_rich Low_complexity Low_complexity 1 23 0 1941 108 3 3 chr12 8252934 8253220 -136029269 - AluSx SINE Alu -24 288 3 198 0 0 0 chr12 8253399 8253421 -136029068 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1573 164 4 7 chr12 8253423 8253704 -136028785 - AluSx SINE Alu -30 282 3 554 92 255 0 chr12 8253704 8253802 -136028687 - Tigger7 DNA MER2_type -610 123 1 1887 101 4 0 chr12 8253825 8254092 -136028397 - AluSp SINE Alu -24 289 22 197 62 0 31 chr12 8254577 8254609 -136027880 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1883 103 4 0 chr12 8254620 8254882 -136027607 - AluSx SINE Alu -44 268 6 553 218 81 0 chr12 8254950 8255074 -136027415 + MER5A DNA MER1_type 28 161 -28 2073 118 3 0 chr12 8255771 8256068 -136026421 + AluSx SINE Alu 1 298 -14 815 277 7 17 chr12 8256076 8256376 -136026113 + AluSg SINE Alu 3 299 -1 2209 112 0 0 chr12 8256953 8257256 -136025233 + AluSq SINE Alu 1 303 -10 23 0 0 0 chr12 8257517 8257540 -136024949 + GC_rich Low_complexity Low_complexity 1 23 0 1204 124 5 11 chr12 8258163 8258349 -136024140 - AluSx SINE Alu -127 185 1 304 309 81 37 chr12 8258354 8258490 -136023999 - HAL1 LINE L1 -178 2329 2188 195 139 0 0 chr12 8258494 8258530 -136023959 + (T)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr12 8258654 8258675 -136023814 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 8258811 8258832 -136023657 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 8259041 8259064 -136023425 + AT_rich Low_complexity Low_complexity 1 23 0 458 185 0 0 chr12 8309266 8309347 -135973142 + L1ME LINE L1 5628 5708 -462 2167 94 0 0 chr12 8309383 8309670 -135972819 + AluSg SINE Alu 1 287 -23 213 108 0 0 chr12 8309670 8309707 -135972782 + (TA)n Simple_repeat Simple_repeat 1 37 0 322 266 85 60 chr12 8309707 8310071 -135972418 + L1MC5 LINE L1 5667 7752 -159 325 224 67 29 chr12 8309793 8309966 -135972523 - L1MC4 LINE L1 -1339 6983 1941 311 227 39 86 chr12 8309997 8310125 -135972364 - L1MC4 LINE L1 -4363 2063 1942 * 347 245 40 44 chr12 8310102 8310249 -135972240 + L1MC4 LINE L1 1941 6976 -1346 1718 149 0 0 chr12 8310253 8310521 -135971968 + AluSx SINE Alu 37 304 -8 1226 184 13 92 chr12 8310525 8310682 -135971807 + MLT1A1 LTR MaLR 1 169 -196 2031 114 0 10 chr12 8310682 8310979 -135971510 + AluSx SINE Alu 1 294 -18 2125 114 3 10 chr12 8310988 8311296 -135971193 + AluSx SINE Alu 1 306 -6 1226 184 13 92 chr12 8311296 8311433 -135971056 + MLT1A1 LTR MaLR 177 281 -84 1686 133 19 4 chr12 8311438 8311708 -135970781 + L1M2 LINE L1 5493 5766 -546 408 176 15 0 chr12 8311782 8311850 -135970639 + AluJo SINE Alu 117 185 -117 492 185 131 8 chr12 8311858 8311988 -135970501 - L1MA9 LINE L1 -365 5947 5802 2157 100 20 0 chr12 8311988 8312289 -135970200 - AluSx SINE Alu -5 307 1 544 213 0 0 chr12 8312311 8312405 -135970084 - AluJb SINE Alu -23 289 196 1789 161 3 0 chr12 8312417 8312715 -135969774 - AluSq SINE Alu -13 300 2 1785 141 47 10 chr12 8312733 8313032 -135969457 - AluSg SINE Alu 0 310 1 1999 136 0 0 chr12 8313035 8313337 -135969152 - AluSq SINE Alu -6 307 6 1422 138 0 0 chr12 8313340 8313550 -135968939 - AluSq SINE Alu -103 210 1 2091 114 0 0 chr12 8313688 8313996 -135968493 + AluSg SINE Alu 1 308 -2 1525 86 53 16 chr12 8314000 8314245 -135968244 - LTR61 LTR ERV1 -341 254 1 377 159 0 0 chr12 8314245 8314308 -135968181 + FLAM SINE Alu 63 125 -8 299 170 0 0 chr12 8314338 8314391 -135968098 + Alu SINE Alu 245 297 -5 2030 125 0 7 chr12 8314391 8314695 -135967794 + AluSq SINE Alu 1 302 -11 1701 155 17 3 chr12 8314714 8315010 -135967479 + AluSx SINE Alu 1 300 -12 2151 91 10 0 chr12 8315012 8315309 -135967180 + AluSp SINE Alu 1 300 -13 210 154 0 0 chr12 8315319 8315358 -135967131 + A-rich Low_complexity Low_complexity 4 42 0 827 103 0 8 chr12 8315362 8315479 -135967010 + AluSg/x SINE Alu 177 292 -18 1026 114 0 0 chr12 8315538 8315678 -135966811 + AluSc SINE Alu 1 140 -169 225 94 0 0 chr12 8315682 8315714 -135966775 + (A)n Simple_repeat Simple_repeat 1 32 0 1030 90 0 0 chr12 8315716 8315849 -135966640 + AluSg SINE Alu 1 133 -177 1655 96 8 4 chr12 8315849 8316089 -135966400 + AluSq SINE Alu 1 241 -72 4689 141 31 33 chr12 8316089 8317463 -135965026 + pTR5 LTR ERV1 743 2438 0 320 161 0 16 chr12 8317466 8317528 -135964961 + AluSq SINE Alu 238 298 -4 1653 153 11 14 chr12 8317550 8317832 -135964657 + AluSx SINE Alu 9 289 -23 1866 147 0 13 chr12 8317920 8318227 -135964262 + AluSg SINE Alu 1 303 -7 2281 93 3 0 chr12 8318251 8318561 -135963928 - AluY SINE Alu 0 311 1 2008 104 40 0 chr12 8318581 8318878 -135963611 - AluY SINE Alu -2 309 1 2216 74 11 0 chr12 8318908 8319215 -135963274 - AluY SINE Alu 0 310 1 24 32 0 0 chr12 8319363 8319394 -135963095 + AT_rich Low_complexity Low_complexity 1 31 0 626 143 0 0 chr12 8319407 8319505 -135962984 - HY1 scRNA scRNA -1 111 14 1950 108 21 0 chr12 8320184 8320471 -135962018 + AluSq SINE Alu 1 293 -20 186 43 0 0 chr12 8320668 8320691 -135961798 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 291 211 28 0 chr12 8320695 8320766 -135961723 - MER5A DNA MER1_type -40 149 77 1214 121 0 0 chr12 8320968 8321142 -135961347 - AluSg/x SINE Alu 0 309 136 1476 167 21 11 chr12 8321147 8321337 -135961152 - AluJo SINE Alu 0 312 117 432 0 0 0 chr12 8321337 8321385 -135961104 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1476 167 21 11 chr12 8321385 8321475 -135961014 - AluJo SINE Alu -195 117 29 2444 62 0 0 chr12 8321903 8322207 -135960282 - AluSx SINE Alu -8 304 1 503 250 91 0 chr12 8322315 8322447 -135960042 - MER5A DNA MER1_type -28 161 18 251 253 12 96 chr12 8322452 8322535 -135959954 - L2 LINE L2 -48 3265 3190 646 33 11 11 chr12 8322535 8322625 -135959864 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 570 308 98 37 chr12 8322698 8323136 -135959353 + L2 LINE L2 2548 3009 -304 191 222 0 0 chr12 8323453 8323489 -135959000 - L2 LINE L2 -765 2549 2514 2366 82 0 3 chr12 8323513 8323818 -135958671 + AluSc SINE Alu 1 304 -5 3877 96 12 50 chr12 8324061 8324229 -135958260 - MER41A LTR ERV1 0 554 381 2101 97 10 7 chr12 8324229 8324528 -135957961 - AluSp SINE Alu -13 300 1 2213 82 0 0 chr12 8324538 8324818 -135957671 - AluSq SINE Alu -20 293 14 3877 96 12 50 chr12 8324818 8325214 -135957275 - MER41A LTR ERV1 -182 372 1 198 257 146 21 chr12 8325407 8325551 -135956938 + L2 LINE L2 3044 3205 -108 2090 96 6 19 chr12 8326295 8326609 -135955880 - AluSx SINE Alu -2 310 1 2213 97 0 0 chr12 8326663 8326963 -135955526 - AluY SINE Alu -11 300 1 2483 40 0 7 chr12 8328031 8328328 -135954161 + AluY SINE Alu 1 295 -16 2045 93 10 10 chr12 8329100 8329400 -135953089 + AluSx SINE Alu 1 300 -12 2087 122 0 6 chr12 8329413 8329724 -135952765 + AluSx SINE Alu 1 309 -3 1701 152 0 35 chr12 8329733 8329931 -135952558 + AluSx SINE Alu 1 185 -127 2269 84 3 0 chr12 8329931 8330228 -135952261 - AluSp SINE Alu -12 301 4 1701 152 0 35 chr12 8330228 8330344 -135952145 + AluSx SINE Alu 185 304 -8 1677 116 135 4 chr12 8330916 8331183 -135951306 - AluSx SINE Alu 0 302 1 2339 87 0 0 chr12 8332079 8332389 -135950100 + AluSx SINE Alu 1 310 -2 1287 186 25 68 chr12 8332545 8332722 -135949767 - AluJb SINE Alu -3 309 151 2267 42 0 62 chr12 8332722 8333031 -135949458 - AluY SINE Alu -14 297 8 1287 186 25 68 chr12 8333031 8333176 -135949313 - AluJb SINE Alu -161 151 1 22 0 0 0 chr12 8333219 8333241 -135949248 + AT_rich Low_complexity Low_complexity 1 22 0 1850 78 114 14 chr12 8334242 8334523 -135947966 + AluSc SINE Alu 1 309 0 1329 108 5 0 chr12 8334613 8334798 -135947691 + AluSq SINE Alu 1 186 -127 361 167 0 0 chr12 8334800 8334866 -135947623 + AluS SINE Alu 232 297 -5 589 165 25 25 chr12 8335212 8335333 -135947156 + FLAM_A SINE Alu 1 121 -21 480 122 0 4 chr12 8335352 8335557 -135946932 + AluSx SINE Alu 1 274 -35 * 563 130 0 0 chr12 8335552 8335629 -135946860 - AluS SINE Alu -234 78 2 1825 161 7 3 chr12 8336358 8336663 -135945826 + AluSx SINE Alu 1 306 -6 2145 123 0 0 chr12 8336665 8336975 -135945514 - AluSg SINE Alu 0 310 1 2258 95 3 0 chr12 8336978 8337284 -135945205 - AluSc SINE Alu -2 307 1 1838 114 32 4 chr12 8337537 8337818 -135944671 - AluSp SINE Alu -21 292 4 1809 128 24 14 chr12 8337820 8338109 -135944380 - AluSx SINE Alu -16 296 5 189 0 0 0 chr12 8338113 8338134 -135944355 + (T)n Simple_repeat Simple_repeat 1 21 0 632 109 11 0 chr12 8338438 8338530 -135943959 + AluSp/q SINE Alu 215 307 -6 * 824 204 0 0 chr12 8338524 8338666 -135943823 - AluJb SINE Alu -31 281 140 1943 101 73 0 chr12 8338673 8338961 -135943528 - AluSq SINE Alu -4 309 1 2204 76 0 20 chr12 8339118 8339420 -135943069 - AluSx SINE Alu -16 296 1 2105 112 3 0 chr12 8339467 8339763 -135942726 - AluSp SINE Alu -16 297 1 2104 92 0 7 chr12 8339769 8340062 -135942427 - AluSg SINE Alu -19 291 1 1950 122 10 10 chr12 8341598 8341893 -135940596 - AluSg SINE Alu -15 295 1 1360 185 68 43 chr12 8341953 8342234 -135940255 - AluJb SINE Alu -11 291 4 2030 125 0 3 chr12 8342434 8342739 -135939750 - AluSg SINE Alu -6 304 1 2117 94 0 0 chr12 8342876 8343163 -135939326 - AluSx SINE Alu -15 297 11 1815 141 7 10 chr12 8343223 8343513 -135938976 + AluSx SINE Alu 1 289 -23 1195 139 0 0 chr12 8343531 8343718 -135938771 + AluSq SINE Alu 123 309 -4 1783 130 4 0 chr12 8343905 8344166 -135938323 + AluSx SINE Alu 1 262 -50 21 0 0 0 chr12 8344173 8344194 -135938295 + AT_rich Low_complexity Low_complexity 1 21 0 1879 113 34 20 chr12 8344194 8344486 -135938003 + AluSx SINE Alu 2 297 -15 1571 109 0 28 chr12 8344486 8344734 -135937755 + AluSp SINE Alu 73 313 0 439 95 0 0 chr12 8344749 8344812 -135937677 - MER41B LTR ERV1 -92 543 481 2348 204 8 22 chr12 8344817 8344934 -135937555 + L1MB7 LINE L1 5555 5672 -512 3541 70 7 11 chr12 8344934 8345389 -135937100 + MLT2A2 LTR ERVL 1 453 0 2348 204 8 22 chr12 8345389 8345495 -135936994 + L1MB7 LINE L1 5672 5778 -406 1932 145 3 0 chr12 8345495 8345791 -135936698 + AluSx SINE Alu 1 297 -15 2348 204 8 22 chr12 8345791 8346057 -135936432 + L1MB7 LINE L1 5778 6038 -146 2004 135 0 22 chr12 8346060 8346378 -135936111 - AluSx SINE Alu -1 311 1 29 0 0 0 chr12 8346480 8346509 -135935980 + AT_rich Low_complexity Low_complexity 1 29 0 340 307 73 39 chr12 8346509 8346681 -135935808 - L1MEc LINE L1 -3947 2477 2257 2310 74 0 3 chr12 8346681 8346977 -135935512 + AluSp SINE Alu 1 295 -18 787 177 0 0 chr12 8346991 8347115 -135935374 + FLAM_A SINE Alu 11 134 -8 1437 122 0 0 chr12 8347210 8347415 -135935074 - AluSx SINE Alu -103 209 5 216 0 0 0 chr12 8347430 8347454 -135935035 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2036 113 3 0 chr12 8347456 8347738 -135934751 - AluSq SINE Alu -30 283 1 818 167 0 0 chr12 8347738 8347870 -135934619 - AluJo/FLAM SINE Alu -170 132 1 572 357 13 21 chr12 8347890 8348128 -135934361 - L1MEc LINE L1 -5463 909 674 2372 49 0 0 chr12 8348309 8348617 -135933872 - AluY SINE Alu 0 308 1 2120 86 7 0 chr12 8348718 8349008 -135933481 - AluSp SINE Alu -16 297 6 407 310 14 28 chr12 8349169 8349385 -135933104 - L1MC4a LINE L1 -1860 5948 5736 2369 67 0 13 chr12 8349388 8349700 -135932789 - AluY SINE Alu -3 308 1 1889 131 7 3 chr12 8349721 8350012 -135932477 - AluJb SINE Alu -20 292 1 540 197 30 23 chr12 8350025 8350157 -135932332 - L1MB8 LINE L1 -170 6008 5876 1112 131 6 0 chr12 8350157 8350333 -135932156 - AluSg/x SINE Alu -6 304 128 2217 64 0 42 chr12 8350355 8350668 -135931821 + AluSp SINE Alu 1 300 -13 198 103 0 0 chr12 8350977 8351006 -135931483 + (CCCCCT)n Simple_repeat Simple_repeat 2 30 0 539 201 42 74 chr12 8351641 8351697 -135930792 + LTR41 LTR ERVL 1 57 -716 2440 45 0 19 chr12 8351697 8352006 -135930483 - AluY SINE Alu -8 303 1 539 201 42 74 chr12 8352006 8352138 -135930351 + LTR41 LTR ERVL 57 183 -590 226 329 14 0 chr12 8352361 8352434 -135930055 + LTR41 LTR ERVL 511 584 -189 1934 88 49 14 chr12 8352511 8352795 -135929694 - AluSq SINE Alu -19 294 1 1699 154 35 0 chr12 8352894 8353180 -135929309 + AluSq SINE Alu 1 296 -17 353 236 122 24 chr12 8353265 8353388 -135929101 - L2 LINE L2 -493 2821 2687 2164 112 0 3 chr12 8353388 8353692 -135928797 + AluSq SINE Alu 1 303 -10 2245 78 0 3 chr12 8353811 8354104 -135928385 - AluSp SINE Alu -21 292 1 2051 88 32 0 chr12 8354497 8354781 -135927708 - AluSg SINE Alu -17 293 1 540 98 49 0 chr12 8355901 8355983 -135926506 + L1PA8 LINE L1 6086 6171 -1 687 134 0 0 chr12 8356982 8357079 -135925410 + AluJ/FLAM SINE Alu 2 98 -214 1436 148 12 136 chr12 8357097 8357435 -135925054 - AluSq SINE Alu -7 296 1 391 161 123 0 chr12 8357435 8357516 -135924973 - Tigger7 DNA MER2_type -2366 121 31 1718 139 64 4 chr12 8357533 8357814 -135924675 - AluSx SINE Alu -14 298 1 913 206 9 138 chr12 8358235 8358447 -135924042 - AluSx SINE Alu -8 304 153 1582 138 4 4 chr12 8358447 8358694 -135923795 + AluSx SINE Alu 46 292 -20 913 206 9 138 chr12 8358694 8358830 -135923659 - AluSx SINE Alu -159 153 1 2110 110 3 0 chr12 8358839 8359138 -135923351 - AluSp SINE Alu -13 300 1 3748 188 38 77 chr12 8359701 8360665 -135921824 + MER21A LTR ERV1 1 927 -4 1812 128 4 0 chr12 8361187 8361461 -135921028 - AluSx SINE Alu -37 275 1 633 171 16 47 chr12 8361607 8361736 -135920753 - AluJb SINE Alu -187 125 1 29 0 0 0 chr12 8361921 8361950 -135920539 + AT_rich Low_complexity Low_complexity 1 29 0 1570 130 0 86 chr12 8362868 8363183 -135919306 + AluSx SINE Alu 2 289 -23 2220 88 0 3 chr12 8363188 8363482 -135919007 + AluSc SINE Alu 1 293 -16 636 151 48 48 chr12 8363902 8364028 -135918461 - FLAM_A SINE Alu -7 126 1 1040 137 11 33 chr12 8364524 8364707 -135917782 - FRAM SINE Alu -4 172 1 1969 107 21 3 chr12 8365060 8365351 -135917138 - AluSp SINE Alu -17 296 1 2299 82 0 0 chr12 8365863 8366166 -135916323 - AluY SINE Alu -8 303 1 208 213 43 0 chr12 8366222 8366269 -135916220 - MIR SINE MIR -31 231 183 686 174 123 58 chr12 8366718 8366873 -135915616 + FRAM SINE Alu 1 164 -12 2107 95 3 0 chr12 8366951 8367245 -135915244 - AluY SINE Alu -11 300 6 1871 125 3 20 chr12 8367248 8367543 -135914946 - AluSq SINE Alu -18 295 6 538 228 0 32 chr12 8368675 8368798 -135913691 - FLAM_A SINE Alu -14 119 1 727 197 7 7 chr12 8370061 8370198 -135912291 - FLAM_C SINE Alu -5 138 2 2041 102 7 0 chr12 8370243 8370536 -135911953 + AluSp SINE Alu 2 296 -17 221 0 0 33 chr12 8371324 8371354 -135911135 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 189 0 0 0 chr12 8371483 8371504 -135910985 + (T)n Simple_repeat Simple_repeat 1 21 0 2448 62 0 0 chr12 8371997 8372302 -135910187 - AluSg SINE Alu -5 305 1 246 333 0 11 chr12 8372402 8372492 -135909997 - L2 LINE L2 -4 3309 3221 2255 47 3 62 chr12 8372492 8372813 -135909676 + AluY SINE Alu 1 302 -9 915 154 99 0 chr12 8373551 8373772 -135908717 - Charlie5 DNA MER1_type 0 2624 2382 363 182 0 0 chr12 8373774 8373840 -135908649 - Charlie5 DNA MER1_type -2418 194 129 2164 63 42 0 chr12 8373934 8374219 -135908270 - AluY SINE Alu -13 298 2 470 91 0 152 chr12 8374219 8374271 -135908218 - AluSc SINE Alu -233 76 42 2006 98 39 0 chr12 8374271 8374556 -135907933 + AluSq SINE Alu 1 296 -17 470 91 0 152 chr12 8374556 8374592 -135907897 - AluSc SINE Alu -267 42 2 1610 137 58 41 chr12 8374664 8374956 -135907533 + AluJo SINE Alu 3 299 -13 2196 86 3 10 chr12 8375347 8375651 -135906838 + AluSq SINE Alu 1 302 -11 2400 72 0 3 chr12 8375651 8375958 -135906531 + AluY SINE Alu 1 306 -5 701 146 38 38 chr12 8376393 8376450 -135906039 - Charlie5 DNA MER1_type 0 2585 2529 1752 149 3 14 chr12 8376450 8376746 -135905743 + AluSx SINE Alu 3 295 -17 701 146 38 38 chr12 8376746 8376873 -135905616 - Charlie5 DNA MER1_type -55 2530 2401 2128 45 0 34 chr12 8377074 8377410 -135905079 + AluY SINE Alu 3 328 0 2052 102 41 0 chr12 8377513 8377807 -135904682 - AluSx SINE Alu -6 306 1 2276 76 0 7 chr12 8378015 8378317 -135904172 - AluY SINE Alu -5 306 7 2031 106 33 7 chr12 8378397 8378700 -135903789 - AluSq SINE Alu -2 311 1 512 156 115 41 chr12 8378704 8378826 -135903663 - FLAM_A SINE Alu 0 142 12 229 223 138 85 chr12 8378845 8378975 -135903514 + L2 LINE L2 3175 3311 -2 460 211 74 16 chr12 8378977 8379192 -135903297 - LTR23 LTR ERV1 0 445 235 570 151 0 0 chr12 8379194 8379280 -135903209 + AluS SINE Alu 2 87 -225 2190 99 3 0 chr12 8379280 8379573 -135902916 + AluSx SINE Alu 1 294 -18 707 180 32 132 chr12 8379573 8379656 -135902833 - LTR56 LTR ERV1 -201 244 154 510 178 168 0 chr12 8379656 8379763 -135902726 - FLAM_A SINE Alu -5 128 4 707 180 32 132 chr12 8379763 8379929 -135902560 - LTR56 LTR ERV1 -291 154 20 1924 96 4 0 chr12 8379959 8380229 -135902260 + AluSx SINE Alu 34 304 -8 683 200 7 22 chr12 8380384 8380519 -135901970 - AluJo SINE Alu -178 134 2 1627 155 7 4 chr12 8380968 8381239 -135901250 + AluJb SINE Alu 37 308 -4 2095 115 3 13 chr12 8381305 8381618 -135900871 + AluSq SINE Alu 1 310 -3 220 372 100 46 chr12 8381812 8382073 -135900416 + L2 LINE L2 2946 3220 -52 396 141 43 11 chr12 8382299 8382391 -135900098 + CT-rich Low_complexity Low_complexity 2 96 0 1669 168 27 0 chr12 8382391 8382689 -135899800 - AluJb SINE Alu -6 306 1 1684 148 44 0 chr12 8382717 8383015 -135899474 - AluSx SINE Alu -1 311 1 1807 96 69 0 chr12 8383064 8383325 -135899164 - AluSc SINE Alu -20 289 11 2294 76 0 13 chr12 8383342 8383643 -135898846 - AluY SINE Alu -14 297 1 1629 127 8 0 chr12 8384413 8384657 -135897832 - AluSg SINE Alu -5 305 60 225 313 0 0 chr12 8384661 8384725 -135897764 - L2 LINE L2 -9 3304 3241 498 91 15 0 chr12 8384725 8384812 -135897677 + AluY SINE Alu 217 304 0 740 154 0 0 chr12 8384837 8384947 -135897542 + AluJo SINE Alu 27 136 -176 229 368 47 0 chr12 8385015 8385121 -135897368 - MIR SINE MIR -56 206 96 2205 111 0 0 chr12 8385126 8385424 -135897065 + AluSx SINE Alu 1 298 -14 1213 161 13 113 chr12 8385424 8385735 -135896754 - AluJo SINE Alu -28 284 5 1695 193 14 43 chr12 8385764 8385837 -135896652 + MLT2D LTR ERVL 1 75 -339 2247 58 14 10 chr12 8385837 8386162 -135896327 + AluSp SINE Alu 2 313 0 1695 193 14 43 chr12 8386162 8386440 -135896049 + MLT2D LTR ERVL 75 342 -72 2081 96 3 7 chr12 8386440 8386775 -135895714 + AluSx SINE Alu 1 334 0 2187 188 137 19 chr12 8386857 8387001 -135895488 + MLT1B-int LTR MaLR 1 127 -1244 2060 106 3 0 chr12 8387001 8387305 -135895184 + AluSp SINE Alu 1 305 0 2187 188 137 19 chr12 8387305 8387379 -135895110 + MLT1B-int LTR MaLR 127 191 -1180 185 62 0 31 chr12 8387379 8387411 -135895078 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2187 188 137 19 chr12 8387411 8387780 -135894709 + MLT1B-int LTR MaLR 191 660 -711 2438 53 7 0 chr12 8387783 8388086 -135894403 + AluY SINE Alu 1 305 -6 2109 123 0 0 chr12 8388107 8388409 -135894080 + AluSx SINE Alu 1 302 -10 1654 169 34 62 chr12 8388414 8388695 -135893794 + MLT1B-int LTR MaLR 1387 1657 -78 2467 36 0 19 chr12 8388695 8389004 -135893485 + AluY SINE Alu 2 304 -7 1654 169 34 62 chr12 8389004 8389076 -135893413 + MLT1B-int LTR MaLR 1657 1730 -5 2058 160 34 16 chr12 8389082 8389463 -135893026 + MLT1B LTR MaLR 1 388 -2 583 304 80 51 chr12 8389464 8389963 -135892526 - L2 LINE L2 -157 3156 2656 630 179 4 94 chr12 8389963 8390046 -135892443 + MSTC LTR MaLR 1 90 -275 2307 64 7 0 chr12 8390046 8390344 -135892145 + AluSp SINE Alu 1 300 -13 2646 29 0 0 chr12 8390344 8390651 -135891838 + AluY SINE Alu 1 308 -3 630 179 4 94 chr12 8390651 8390733 -135891756 + MSTC LTR MaLR 88 158 -207 1493 171 0 56 chr12 8390733 8391054 -135891435 + AluJo SINE Alu 1 303 -9 1995 88 34 20 chr12 8391072 8391240 -135891249 - AluSq SINE Alu -14 299 124 2409 64 0 10 chr12 8391240 8391554 -135890935 - AluY SINE Alu 0 311 1 1995 88 34 20 chr12 8391554 8391680 -135890809 - AluSq SINE Alu -189 124 1 865 266 176 3 chr12 8391721 8392010 -135890479 - L2 LINE L2 -656 2658 2320 1809 139 3 10 chr12 8392085 8392380 -135890109 + AluSq SINE Alu 1 293 -20 3501 134 103 35 chr12 8392459 8392588 -135889901 - L1MC2 LINE L1 -9 6335 6216 1098 96 0 0 chr12 8392588 8392745 -135889744 + (TA)n Simple_repeat Simple_repeat 1 157 0 342 0 0 0 chr12 8392744 8392782 -135889707 + (GA)n Simple_repeat Simple_repeat 2 39 0 * 3501 134 103 35 chr12 8392745 8392787 -135889702 - L1MC2 LINE L1 -128 6216 6178 1943 111 0 0 chr12 8392787 8393057 -135889432 - AluSx SINE Alu -42 270 1 3501 134 103 35 chr12 8393057 8393602 -135888887 - L1MC2 LINE L1 -166 6178 5609 294 29 0 0 chr12 8393621 8393655 -135888834 - U2 snRNA snRNA -152 36 3 1606 119 105 35 chr12 8393933 8394218 -135888271 - AluSx SINE Alu -7 305 1 1221 185 49 15 chr12 8394415 8394680 -135887809 + AluJo SINE Alu 6 279 -33 2504 49 0 3 chr12 8395462 8395768 -135886721 + AluY SINE Alu 1 305 -6 1680 143 13 27 chr12 8396411 8396711 -135885778 - AluJb SINE Alu -2 310 15 202 361 17 25 chr12 8397019 8397138 -135885351 - L2 LINE L2 -18 3295 3178 2157 109 3 0 chr12 8397153 8397456 -135885033 - AluSx SINE Alu -3 309 6 219 287 200 0 chr12 8397615 8397730 -135884759 - MIR SINE MIR -64 198 61 2244 82 0 10 chr12 8397813 8398119 -135884370 + AluSg SINE Alu 1 303 -7 1451 199 33 33 chr12 8398518 8398854 -135883635 + MER58B DNA MER1_type 1 336 -5 2078 112 3 3 chr12 8399093 8399396 -135883093 + AluSx SINE Alu 1 303 -9 1988 113 10 10 chr12 8399791 8400100 -135882389 + AluSq SINE Alu 1 309 -4 1167 80 0 0 chr12 8400225 8400406 -135882083 + AluSg/x SINE Alu 132 312 0 28 0 0 0 chr12 8400731 8400759 -135881730 + AT_rich Low_complexity Low_complexity 1 28 0 770 126 17 0 chr12 8400760 8400879 -135881610 - AluJb SINE Alu -11 301 181 258 167 0 0 chr12 8400883 8400925 -135881564 - THE1C LTR MaLR -2 426 385 2280 62 0 3 chr12 8400926 8401245 -135881244 + AluSq SINE Alu 1 318 0 1885 136 14 14 chr12 8401257 8401552 -135880937 + AluSx SINE Alu 1 295 -17 1478 150 51 90 chr12 8401559 8401599 -135880890 - THE1C LTR MaLR -35 340 300 1981 101 17 0 chr12 8401599 8401886 -135880603 + AluSg SINE Alu 5 296 -14 1478 150 51 90 chr12 8401886 8402038 -135880451 - THE1C LTR MaLR -75 300 166 2583 42 0 0 chr12 8402038 8402347 -135880142 - AluY SINE Alu -2 309 1 1478 150 51 90 chr12 8402347 8402507 -135879982 - THE1C LTR MaLR -209 166 1 257 197 0 49 chr12 8402507 8402565 -135879924 - AluYa5 SINE Alu -120 181 127 718 205 0 0 chr12 8402572 8402694 -135879795 - FLAM_C SINE Alu -11 122 1 2146 93 3 7 chr12 8402735 8403026 -135879463 - AluSx SINE Alu -20 292 3 519 179 98 49 chr12 8403033 8403156 -135879333 - FLAM_C SINE Alu -3 130 2 553 180 0 0 chr12 8403217 8403306 -135879183 + AluJ/FLAM SINE Alu 2 90 -222 845 201 6 136 chr12 8403332 8403467 -135879022 + AluJo SINE Alu 1 152 -160 1877 111 0 21 chr12 8403467 8403605 -135878884 + AluSp SINE Alu 1 140 -173 2272 84 0 13 chr12 8403605 8403914 -135878575 + AluSg SINE Alu 2 306 -4 1877 111 0 21 chr12 8403914 8404064 -135878425 + AluSp SINE Alu 140 283 -30 194 0 0 37 chr12 8404067 8404094 -135878395 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 845 201 6 136 chr12 8404094 8404293 -135878196 + AluJo SINE Alu 154 295 -17 2168 115 0 3 chr12 8404335 8404647 -135877842 - AluSx SINE Alu -1 311 1 1987 103 23 26 chr12 8404848 8405158 -135877331 - AluSx SINE Alu 0 312 4 2210 91 0 7 chr12 8405302 8405611 -135876878 - AluSx SINE Alu -5 307 1 303 282 20 54 chr12 8406295 8406371 -135876118 - L1ME2 LINE L1 0 6164 6094 180 0 0 0 chr12 8406371 8406391 -135876098 + (TC)n Simple_repeat Simple_repeat 1 20 0 303 282 20 54 chr12 8406391 8406463 -135876026 - L1ME2 LINE L1 -70 6094 6021 935 92 15 0 chr12 8406737 8406868 -135875621 - L1MA1 LINE L1 -6 6296 6164 305 279 0 0 chr12 8407761 8407847 -135874642 - L1ME3 LINE L1 -31 6131 6046 1780 104 16 49 chr12 8407877 8408185 -135874304 - AluSx SINE Alu -13 299 2 1108 119 0 6 chr12 8408276 8408444 -135874045 - AluSg/x SINE Alu -11 301 135 1108 216 113 12 chr12 8408446 8408774 -135873715 - L1ME3 LINE L1 -181 5981 5621 2061 110 0 10 chr12 8408777 8409077 -135873412 - AluSx SINE Alu -15 297 1 298 333 52 46 chr12 8409142 8409295 -135873194 - MIR SINE MIR -25 237 84 2345 71 0 0 chr12 8409303 8409597 -135872892 - AluY SINE Alu -17 294 1 310 209 291 0 chr12 8409713 8409799 -135872690 - MER81 DNA DNA -3 111 1 2076 104 0 7 chr12 8409905 8410202 -135872287 - AluSg SINE Alu -14 296 2 433 164 0 0 chr12 8410298 8410371 -135872118 + MER5A DNA MER1_type 2 74 -115 2239 98 0 0 chr12 8410372 8410667 -135871822 + AluSg SINE Alu 3 297 -13 1849 131 7 7 chr12 8410697 8410988 -135871501 + AluSx SINE Alu 1 291 -21 222 118 0 0 chr12 8411054 8411088 -135871401 + (A)n Simple_repeat Simple_repeat 1 34 0 670 150 0 0 chr12 8411321 8411421 -135871068 + HY3 scRNA scRNA 1 100 -1 2350 81 3 0 chr12 8411465 8411773 -135870716 + AluSp SINE Alu 1 309 -4 2232 67 0 42 chr12 8412225 8412538 -135869951 + AluY SINE Alu 1 300 -11 2226 92 0 0 chr12 8412999 8413294 -135869195 - AluY SINE Alu -16 295 1 1386 174 79 4 chr12 8413587 8413840 -135868649 + AluJb SINE Alu 3 274 -38 2035 117 3 7 chr12 8413880 8414189 -135868300 - AluY SINE Alu -3 308 1 189 0 0 0 chr12 8414389 8414410 -135868079 + (A)n Simple_repeat Simple_repeat 1 21 0 2227 82 0 7 chr12 8414527 8414830 -135867659 + AluY SINE Alu 1 301 -10 2071 100 3 3 chr12 8414851 8415151 -135867338 + AluSq SINE Alu 5 304 -9 1195 89 0 0 chr12 8415180 8415348 -135867141 + AluY SINE Alu 134 301 -10 2079 100 3 3 chr12 8415369 8415670 -135866819 + AluSq SINE Alu 5 305 -8 24 32 0 0 chr12 8415890 8415921 -135866568 + AT_rich Low_complexity Low_complexity 1 31 0 2168 99 0 3 chr12 8415921 8416223 -135866266 - AluSg SINE Alu -9 301 1 876 102 23 0 chr12 8416224 8416352 -135866137 - AluSq/x SINE Alu -176 136 6 2103 117 0 3 chr12 8416789 8417088 -135865401 - AluSq SINE Alu -15 298 1 217 281 120 60 chr12 8418125 8418188 -135864301 + L3 LINE CR1 244 302 -1275 2033 94 49 0 chr12 8418188 8418476 -135864013 + AluSp SINE Alu 1 302 -11 217 281 120 60 chr12 8418476 8418579 -135863910 + L3 LINE CR1 302 420 -1157 986 228 25 0 chr12 8418590 8418787 -135863702 - MER20 DNA MER1_type -17 202 1 290 260 39 0 chr12 8418793 8418870 -135863619 + L3 LINE CR1 417 496 -1081 1874 130 0 38 chr12 8419012 8419328 -135863161 - AluSq SINE Alu -9 304 1 2095 117 7 0 chr12 8419465 8419765 -135862724 + AluSq SINE Alu 6 307 -6 1016 137 0 0 chr12 8419827 8419980 -135862509 + AluSx SINE Alu 2 154 -158 21 0 0 0 chr12 8419985 8420006 -135862483 + AT_rich Low_complexity Low_complexity 1 21 0 525 263 109 76 chr12 8420138 8420228 -135862261 + L3 LINE CR1 1144 1230 -347 2161 108 7 0 chr12 8420228 8420533 -135861956 + AluSp SINE Alu 3 309 -4 525 263 109 76 chr12 8420533 8420746 -135861743 + L3 LINE CR1 1230 1457 -120 265 91 0 0 chr12 8420770 8420803 -135861686 - U2 snRNA snRNA -155 33 1 605 314 41 29 chr12 8420803 8421048 -135861441 + L2 LINE L2 2274 2521 -793 2012 110 0 36 chr12 8421049 8421358 -135861131 + AluSx SINE Alu 1 298 -14 317 241 23 35 chr12 8421362 8421449 -135861040 + L1MC4a LINE L1 5764 5849 -1959 2183 104 3 0 chr12 8421456 8421763 -135860726 + AluSq SINE Alu 1 308 -5 1095 203 147 15 chr12 8421795 8422061 -135860428 + AluSx SINE Alu 1 301 -1 2391 72 0 0 chr12 8422061 8422368 -135860121 + AluY SINE Alu 1 307 -4 725 38 0 38 chr12 8422270 8422376 -135860113 + AluY SINE Alu 210 311 0 255 246 120 113 chr12 8422466 8422698 -135859791 - L1MC4a LINE L1 -427 5745 5516 24 0 0 0 chr12 8422698 8422722 -135859767 + AT_rich Low_complexity Low_complexity 1 24 0 1605 192 4 0 chr12 8422722 8423003 -135859486 - AluSx SINE Alu -30 282 1 255 246 120 113 chr12 8423003 8423252 -135859237 - L1MC4a LINE L1 -655 5517 5428 2246 62 24 0 chr12 8423394 8423683 -135858806 - AluY SINE Alu -15 296 1 1617 185 7 7 chr12 8423685 8423982 -135858507 - AluJb SINE Alu -15 297 1 1804 161 3 0 chr12 8423986 8424278 -135858211 - AluSx SINE Alu -14 298 6 1964 116 20 3 chr12 8424326 8424627 -135857862 + AluSp SINE Alu 3 308 -5 279 252 32 41 chr12 8424636 8424759 -135857730 + L1ME4a LINE L1 5936 6057 -64 23 0 0 0 chr12 8424759 8424782 -135857707 + AT_rich Low_complexity Low_complexity 1 23 0 233 337 14 100 chr12 8424828 8425107 -135857382 + L2 LINE L2 2700 2954 -360 196 328 150 52 chr12 8425429 8425602 -135856887 - L2 LINE L2 -345 2969 2814 2159 83 31 0 chr12 8425602 8425891 -135856598 - AluSx SINE Alu -14 298 1 196 328 150 52 chr12 8425891 8426004 -135856485 - L2 LINE L2 -500 2814 2655 196 304 54 0 chr12 8426274 8426330 -135856159 - L2 LINE L2 -5 3267 3209 2190 99 0 16 chr12 8427272 8427586 -135854903 + AluSc SINE Alu 1 309 0 619 163 0 23 chr12 8427749 8427878 -135854611 + MER53 DNA DNA 1 126 -63 2172 73 17 7 chr12 8427979 8428280 -135854209 + AluY SINE Alu 1 304 -7 581 293 16 42 chr12 8428440 8428631 -135853858 - MER5A DNA MER1_type -3 186 1 1944 91 58 0 chr12 8428650 8428924 -135853565 + AluSq SINE Alu 6 295 -18 380 257 135 0 chr12 8428951 8429099 -135853390 + Charlie2a DNA MER1_type 1471 1638 -1224 272 313 202 0 chr12 8429200 8429299 -135853190 + MER91A DNA MER1_type 58 176 -20 317 257 57 0 chr12 8429310 8429380 -135853109 + MER91A DNA MER1_type 123 196 0 695 100 0 64 chr12 8429480 8429590 -135852899 + AluSg/x SINE Alu 191 293 -17 23 0 0 0 chr12 8429611 8429634 -135852855 + AT_rich Low_complexity Low_complexity 1 23 0 1169 309 83 23 chr12 8430855 8431116 -135851373 + L2 LINE L2 575 819 -2495 2271 93 0 0 chr12 8431116 8431416 -135851073 + AluSg1 SINE Alu 1 300 -9 1169 309 83 23 chr12 8431416 8431671 -135850818 + L2 LINE L2 819 1122 -2192 718 147 0 2 chr12 8431673 8431910 -135850579 + AluSx SINE Alu 2 282 -28 15723 69 3 24 chr12 8431910 8432394 -135850095 + HERVL-A1 LTR ERVL 926 1419 -4235 2028 91 6 70 chr12 8432394 8432725 -135849764 - AluSg SINE Alu 0 310 1 15723 69 3 24 chr12 8432725 8433212 -135849277 + HERVL-A1 LTR ERVL 1419 1915 -3739 2369 86 0 0 chr12 8433212 8433514 -135848975 - AluSg SINE Alu -8 302 1 15723 69 3 24 chr12 8433514 8434324 -135848165 + HERVL-A1 LTR ERVL 1915 2664 -2990 2596 39 0 0 chr12 8434324 8434635 -135847854 - AluY SINE Alu 0 311 1 15723 69 3 24 chr12 8434635 8434870 -135847619 + HERVL-A1 LTR ERVL 2664 2902 -2752 1905 83 0 74 chr12 8434870 8435032 -135847457 - AluSg SINE Alu -21 289 159 2070 122 3 3 chr12 8435032 8435336 -135847153 - AluSp SINE Alu -9 304 1 1905 83 0 74 chr12 8435336 8435485 -135847004 - AluSg SINE Alu -151 159 1 1001 89 7 0 chr12 8435485 8435620 -135846869 - AluSq/x SINE Alu -176 136 1 16867 120 36 81 chr12 8435620 8437220 -135845269 + HERVL-A1 LTR ERVL 2932 4601 -1163 2163 81 0 3 chr12 8437220 8437504 -135844985 + AluSx SINE Alu 20 302 -10 1259 101 0 0 chr12 8437504 8437682 -135844807 + AluSg/x SINE Alu 133 310 0 16867 120 36 81 chr12 8437682 8438467 -135844022 + HERVL-A1 LTR ERVL 4600 5418 -346 2173 82 3 30 chr12 8438467 8438770 -135843719 + AluSg SINE Alu 1 295 -15 16867 120 36 81 chr12 8438770 8438908 -135843581 + HERVL-A1 LTR ERVL 5418 5561 -203 2244 83 10 0 chr12 8438908 8439209 -135843280 + AluSp SINE Alu 1 304 -9 16867 120 36 81 chr12 8439209 8439386 -135843103 + HERVL-A1 LTR ERVL 5561 5680 -84 2284 65 14 0 chr12 8439386 8439677 -135842812 - AluY SINE Alu -16 295 1 16867 120 36 81 chr12 8439677 8439752 -135842737 + HERVL-A1 LTR ERVL 5680 5757 -7 2805 91 77 12 chr12 8439752 8440128 -135842361 + MLT2A1 LTR ERVL 1 408 -36 674 34 11 0 chr12 8440128 8440217 -135842272 + (TCTA)n Simple_repeat Simple_repeat 3 92 0 2805 91 77 12 chr12 8440217 8440257 -135842232 + MLT2A1 LTR ERVL 408 444 0 462 263 42 0 chr12 8440257 8440375 -135842114 + L2 LINE L2 2940 3062 -251 6991 128 66 32 chr12 8440375 8441086 -135841403 + Tigger1 DNA MER2_type 1 687 -1731 2120 119 0 10 chr12 8441086 8441398 -135841091 + AluSq SINE Alu 1 309 -4 2234 96 3 0 chr12 8441398 8441699 -135840790 + AluSp SINE Alu 1 303 -10 6991 128 66 32 chr12 8441699 8441765 -135840724 + Tigger1 DNA MER2_type 687 749 -1669 2201 93 10 3 chr12 8441765 8442065 -135840424 - AluSx SINE Alu -10 302 1 6991 128 66 32 chr12 8442065 8442503 -135839986 + Tigger1 DNA MER2_type 749 1259 -1159 25 0 0 0 chr12 8442505 8442530 -135839959 + AT_rich Low_complexity Low_complexity 1 25 0 812 152 0 0 chr12 8442536 8442661 -135839828 + FLAM_C SINE Alu 1 125 -18 1587 117 32 0 chr12 8442661 8442910 -135839579 - L1MA3 LINE L1 -3 6302 6046 1340 135 0 5 chr12 8442919 8443119 -135839370 - AluSg/x SINE Alu -27 283 85 2419 109 3 22 chr12 8443119 8443396 -135839093 - L1MA3 LINE L1 -251 6054 5784 396 59 0 0 chr12 8443396 8443447 -135839042 + (CA)n Simple_repeat Simple_repeat 2 52 0 2419 109 3 22 chr12 8443447 8443536 -135838953 - L1MA3 LINE L1 -521 5784 5695 335 85 34 0 chr12 8443533 8443592 -135838897 - L1MA3 LINE L1 -935 5370 5310 * 2070 147 43 3 chr12 8443593 8443919 -135838570 + Tigger1 DNA MER2_type 1250 1588 -830 969 155 0 133 chr12 8443919 8444183 -135838306 + AluJb SINE Alu 1 229 -83 372 194 0 14 chr12 8444237 8444309 -135838180 + AluJb SINE Alu 232 302 0 5510 110 8 41 chr12 8444338 8444820 -135837669 + Tigger1 DNA MER2_type 1577 2074 -344 2137 97 0 31 chr12 8444820 8445139 -135837350 - AluY SINE Alu -2 309 1 5510 110 8 41 chr12 8445139 8445317 -135837172 + Tigger1 DNA MER2_type 2074 2256 -162 2219 74 0 0 chr12 8445317 8445643 -135836846 - AluY SINE Alu 0 326 1 2161 88 3 3 chr12 8445645 8445942 -135836547 - AluSx SINE Alu -15 297 1 1927 126 0 17 chr12 8445945 8446247 -135836242 - AluSx SINE Alu -15 297 1 5510 110 8 41 chr12 8446247 8446448 -135836041 + Tigger1 DNA MER2_type 2259 2418 0 232 258 97 0 chr12 8446559 8446621 -135835868 + L2 LINE L2 3246 3313 0 2419 77 0 0 chr12 8446694 8447005 -135835484 + AluSx SINE Alu 1 311 -1 1774 142 3 3 chr12 8447037 8447351 -135835138 + AluSq SINE Alu 5 318 0 1194 124 0 0 chr12 8447351 8447528 -135834961 + AluSg/x SINE Alu 133 309 -1 993 89 13 19 chr12 8447722 8447880 -135834609 - BC200 scRNA scRNA -38 162 6 1850 128 14 14 chr12 8448272 8448620 -135833869 + AluSq SINE Alu 1 313 0 1036 82 0 0 chr12 8448680 8448815 -135833674 + AluSq/x SINE Alu 1 135 -178 2128 93 10 7 chr12 8448815 8448939 -135833550 + AluSc SINE Alu 1 123 -186 189 0 0 0 chr12 8448939 8448960 -135833529 + (CA)n Simple_repeat Simple_repeat 2 22 0 2128 93 10 7 chr12 8448960 8449136 -135833353 + AluSc SINE Alu 123 302 -7 246 216 149 27 chr12 8449917 8449991 -135832498 + MIR3 SINE MIR 122 204 -4 2203 93 7 0 chr12 8450730 8451031 -135831458 + AluSq SINE Alu 1 303 -10 2254 79 3 10 chr12 8451469 8451773 -135830716 - AluSp SINE Alu -11 302 1 26 50 0 0 chr12 8451773 8451813 -135830676 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr12 8452025 8452054 -135830435 + AT_rich Low_complexity Low_complexity 1 29 0 2112 58 14 7 chr12 8452952 8453228 -135829261 - AluSp SINE Alu -35 278 1 1949 97 0 17 chr12 8453260 8453578 -135828911 + AluSg1 SINE Alu 1 313 0 22 0 0 0 chr12 8453773 8453795 -135828694 + GC_rich Low_complexity Low_complexity 1 22 0 1622 199 55 81 chr12 8454600 8455093 -135827396 + L1ME3A LINE L1 5343 5822 -348 791 185 7 0 chr12 8455101 8455236 -135827253 + FRAM SINE Alu 23 158 -18 1885 148 3 0 chr12 8455238 8455542 -135826947 + AluSg SINE Alu 1 305 -5 811 227 152 12 chr12 8455560 8455816 -135826673 + L1ME3A LINE L1 5826 6117 -53 2297 92 0 3 chr12 8456086 8456392 -135826097 - AluSg SINE Alu -5 305 1 219 36 0 0 chr12 8456397 8456425 -135826064 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2028 104 4 0 chr12 8456426 8456705 -135825784 - AluSx SINE Alu -32 280 1 247 281 45 34 chr12 8456758 8456847 -135825642 - MIR SINE MIR -81 127 38 1249 163 108 59 chr12 8456986 8457274 -135825215 - AluJo SINE Alu 0 302 1 461 203 106 32 chr12 8457558 8457681 -135824808 - FLAM_A SINE Alu -1 132 1 863 180 6 6 chr12 8457681 8457837 -135824652 - AluJb SINE Alu -14 298 140 2328 77 0 22 chr12 8458157 8458470 -135824019 - AluSx SINE Alu -5 307 2 1959 109 31 7 chr12 8459782 8460075 -135822414 + AluSc SINE Alu 1 300 -9 669 119 10 0 chr12 8460456 8460557 -135821932 - AluSx SINE Alu -17 295 194 1075 71 0 7 chr12 8460558 8460699 -135821790 - AluSx SINE Alu -171 141 2 183 296 45 0 chr12 8460748 8460792 -135821697 - L2 LINE L2 -24 3289 3244 1903 104 47 17 chr12 8460810 8461108 -135821381 + AluSx SINE Alu 6 312 0 2516 39 0 7 chr12 8462457 8462767 -135819722 + AluY SINE Alu 1 308 -3 278 265 112 0 chr12 8463150 8463248 -135819241 + MIR SINE MIR 113 221 -41 1967 113 7 7 chr12 8463362 8463654 -135818835 - AluSg SINE Alu -18 292 1 2123 103 10 0 chr12 8463724 8464016 -135818473 - AluSx SINE Alu -17 295 1 538 183 183 49 chr12 8464068 8464331 -135818158 - L1MC5 LINE L1 -146 7815 7518 679 241 18 12 chr12 8464389 8464555 -135817934 - MIR SINE MIR -37 225 59 416 223 39 23 chr12 8465216 8465346 -135817143 - L1ME LINE L1 -298 5823 5692 619 315 94 9 chr12 8465694 8465907 -135816582 + MIR SINE MIR 6 236 -26 1165 102 12 0 chr12 8466006 8466172 -135816317 - AluSg/x SINE Alu -11 301 134 1943 99 41 3 chr12 8466172 8466466 -135816023 - AluSx SINE Alu -7 305 1 593 188 23 30 chr12 8466500 8466633 -135815856 + FLAM_C SINE Alu 1 132 -1 2168 66 3 78 chr12 8466695 8467027 -135815462 + AluSg SINE Alu 1 307 -3 257 232 20 20 chr12 8467693 8467792 -135814697 + G-rich Low_complexity Low_complexity 2 100 0 198 103 0 0 chr12 8468685 8468714 -135813775 + (TCC)n Simple_repeat Simple_repeat 1 29 0 238 197 175 43 chr12 8471130 8471268 -135811221 - MIR SINE MIR 0 262 13 2031 122 0 0 chr12 8471869 8472185 -135810304 + AluSx SINE Alu 1 316 0 2188 122 0 3 chr12 8475487 8475783 -135806706 - AluSg SINE Alu -15 295 1 239 233 0 0 chr12 8475818 8475878 -135806611 - L2 LINE L2 0 3313 3254 186 43 0 0 chr12 8476250 8476273 -135806216 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1891 130 11 21 chr12 8476285 8476570 -135805919 - AluSx SINE Alu -30 282 1 1769 181 13 7 chr12 8476574 8476872 -135805617 - AluJo SINE Alu -12 300 1 2306 107 0 0 chr12 8476942 8477240 -135805249 - AluSq SINE Alu -15 298 1 2407 98 0 3 chr12 8477996 8478301 -135804188 + AluSq SINE Alu 1 304 -9 185 279 115 0 chr12 8478480 8478541 -135803948 - MIR SINE MIR -109 153 86 210 302 0 0 chr12 8479267 8479320 -135803169 + GA-rich Low_complexity Low_complexity 1 53 0 1394 160 144 0 chr12 8479356 8479619 -135802870 + AluSx SINE Alu 2 302 0 2112 134 0 13 chr12 8480103 8480273 -135802216 - AluSx SINE Alu -9 303 137 2389 85 10 3 chr12 8480273 8480578 -135801911 - AluSx SINE Alu -5 307 1 2112 134 0 13 chr12 8480578 8480714 -135801775 - AluSx SINE Alu -175 137 1 2271 105 0 7 chr12 8480717 8481021 -135801468 - AluSq SINE Alu -11 302 1 460 287 59 44 chr12 8481333 8481654 -135800835 - L1MC5 LINE L1 -33 7928 7603 2367 79 14 0 chr12 8482233 8482525 -135799964 + AluSp SINE Alu 1 296 -17 213 163 0 0 chr12 8482997 8483046 -135799443 + (CAG)n Simple_repeat Simple_repeat 1 49 0 223 330 0 11 chr12 8484150 8484238 -135798251 + MIR SINE MIR 70 156 -106 1834 169 0 23 chr12 8485030 8485338 -135797151 - AluJb SINE Alu -11 301 1 1028 41 0 63 chr12 8485881 8486196 -135796293 + (TTCCC)n Simple_repeat Simple_repeat 1 295 0 2045 136 3 0 chr12 8486197 8486492 -135795997 - AluSx SINE Alu -16 296 1 2041 120 3 23 chr12 8486931 8487230 -135795259 - AluSx SINE Alu -19 293 1 2135 117 14 0 chr12 8487288 8487579 -135794910 - AluY SINE Alu -15 296 2 233 29 29 0 chr12 8488132 8488166 -135794323 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2142 127 3 0 chr12 8490895 8491187 -135791302 + AluSq SINE Alu 1 293 -20 2268 98 0 30 chr12 8491193 8491498 -135790991 + AluSg SINE Alu 1 296 -14 523 258 81 57 chr12 8492458 8492706 -135789783 + HAL1 LINE L1 2252 2505 -2 818 190 67 11 chr12 8493506 8493685 -135788804 - MER5A DNA MER1_type 0 189 1 30 0 0 0 chr12 8495440 8495470 -135787019 + AT_rich Low_complexity Low_complexity 1 30 0 2227 99 0 0 chr12 8495470 8495753 -135786736 - AluSx SINE Alu -25 287 5 337 255 112 0 chr12 8496276 8496437 -135786052 - L1ME4a LINE L1 -5 6116 5938 1722 163 11 3 chr12 8496517 8496823 -135785666 - AluSx SINE Alu 0 308 1 2628 158 30 2 chr12 8496835 8497309 -135785180 - L1MB2 LINE L1 -3 6168 5682 743 167 24 0 chr12 8497397 8497523 -135784966 - FLAM_C SINE Alu 0 133 5 2362 71 3 16 chr12 8497701 8498011 -135784478 - AluSp SINE Alu -7 306 1 2399 92 0 0 chr12 8498012 8498318 -135784171 - AluSg SINE Alu -4 306 1 2104 144 7 0 chr12 8498852 8499157 -135783332 + AluSx SINE Alu 1 307 -5 2253 113 13 0 chr12 8499473 8499775 -135782714 + AluSp SINE Alu 1 306 -7 213 271 51 0 chr12 8499859 8499918 -135782571 - MIR3 SINE MIR -5 203 142 751 179 0 22 chr12 8499918 8499935 -135782554 - FLAM_C SINE Alu -180 132 116 216 0 0 0 chr12 8499935 8499959 -135782530 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 751 179 0 22 chr12 8499959 8500075 -135782414 - FLAM_C SINE Alu -196 116 2 2457 91 0 10 chr12 8500431 8500739 -135781750 + AluSx SINE Alu 1 305 -7 216 156 44 0 chr12 8502131 8502176 -135780313 + (TAGG)n Simple_repeat Simple_repeat 2 48 0 328 278 17 80 chr12 8502550 8502727 -135779762 - L1ME4a LINE L1 -7 6114 5962 1940 145 0 7 chr12 8502727 8503023 -135779466 - AluSx SINE Alu -18 294 1 328 278 17 80 chr12 8503023 8503144 -135779345 - L1ME4a LINE L1 -159 5962 5835 28 48 0 0 chr12 8503248 8503290 -135779199 + AT_rich Low_complexity Low_complexity 1 42 0 2325 99 0 3 chr12 8503478 8503781 -135778708 - AluSq SINE Alu -11 302 1 225 354 44 9 chr12 8503900 8504013 -135778476 - L1ME4a LINE L1 -2143 5665 5549 1142 103 0 7 chr12 8504512 8504658 -135777831 + AluSq/x SINE Alu 1 145 -167 373 302 44 28 chr12 8505301 8505483 -135777006 + MIR3 SINE MIR 23 207 -1 344 306 26 4 chr12 8505626 8505756 -135776733 + MIR SINE MIR 35 168 -40 2445 60 3 22 chr12 8505970 8506285 -135776204 + AluY SINE Alu 1 309 -2 1823 160 17 3 chr12 8506295 8506595 -135775894 + AluJb SINE Alu 9 312 0 203 0 0 36 chr12 8506754 8506782 -135775707 + (CAG)n Simple_repeat Simple_repeat 1 27 0 1877 130 68 10 chr12 8506998 8507291 -135775198 - AluJo SINE Alu -2 310 1 257 263 91 10 chr12 8507380 8507479 -135775010 + MIR SINE MIR 156 262 0 21 71 0 0 chr12 8507738 8507780 -135774709 + AT_rich Low_complexity Low_complexity 1 42 0 1894 183 83 45 chr12 8508053 8508524 -135773965 + LTR2B LTR ERV1 2 490 0 1312 119 5 0 chr12 8508657 8508842 -135773647 + AluSg/x SINE Alu 125 310 -2 2379 86 0 10 chr12 8509017 8509321 -135773168 - AluSc SINE Alu -7 302 2 369 286 141 25 chr12 8509483 8509682 -135772807 - MIR SINE MIR -24 238 17 1121 138 0 0 chr12 8509770 8509930 -135772559 - AluSg/x SINE Alu -16 294 135 1809 154 18 89 chr12 8509930 8509996 -135772493 + MER82 DNA MER2_type 141 210 -443 2171 79 36 0 chr12 8509996 8510274 -135772215 - AluSq SINE Alu -25 288 1 1809 154 18 89 chr12 8510274 8510590 -135771899 + MER82 DNA MER2_type 210 496 -157 445 201 219 18 chr12 8510779 8510943 -135771546 + MIR SINE MIR 66 262 0 383 254 42 17 chr12 8511065 8511183 -135771306 + MIR SINE MIR 92 212 -50 354 91 18 0 chr12 8511499 8511554 -135770935 - AluSp SINE Alu -6 297 242 752 157 50 0 chr12 8511629 8511750 -135770739 - AluSp SINE Alu -64 249 123 398 263 113 31 chr12 8511787 8512189 -135770300 - L1ME3 LINE L1 -211 5951 5449 501 172 0 0 chr12 8512745 8512832 -135769657 - L2 LINE L2 -2 3311 3225 2180 124 3 13 chr12 8513669 8513984 -135768505 - AluSx SINE Alu 0 312 1 208 319 0 28 chr12 8514050 8514122 -135768367 - L2 LINE L2 -2 3270 3201 189 0 0 0 chr12 8514526 8514547 -135767942 + (T)n Simple_repeat Simple_repeat 1 21 0 720 279 83 14 chr12 8515721 8516037 -135766452 - L1ME LINE L1 -362 5800 5468 387 0 0 0 chr12 8517837 8517880 -135764609 + (CA)n Simple_repeat Simple_repeat 1 43 0 191 193 0 0 chr12 8518304 8518349 -135764140 + MIR SINE MIR 108 142 -66 2271 117 7 0 chr12 8518481 8518788 -135763701 - AluSg SINE Alu -1 309 1 1789 170 0 16 chr12 8518792 8519104 -135763385 - AluJo SINE Alu -5 307 1 1478 78 165 0 chr12 8519495 8519725 -135762764 - L1PA7 LINE L1 0 6154 5887 295 298 12 0 chr12 8519851 8519935 -135762554 + L2 LINE L2 3188 3272 0 2297 101 0 13 chr12 8520072 8520380 -135762109 - AluSg SINE Alu -6 304 1 324 273 71 60 chr12 8520637 8520750 -135761739 + MIR SINE MIR 72 189 -73 2207 129 0 16 chr12 8520750 8521067 -135761422 - AluSx SINE Alu 0 312 1 324 273 71 60 chr12 8521067 8521136 -135761353 + MIR SINE MIR 189 256 -6 2156 116 3 7 chr12 8521393 8521695 -135760794 + AluSx SINE Alu 1 301 -11 1955 104 30 11 chr12 8521718 8521987 -135760502 + AluSx SINE Alu 3 276 -36 297 0 0 0 chr12 8521991 8522024 -135760465 + (CA)n Simple_repeat Simple_repeat 2 34 0 23 33 0 0 chr12 8522058 8522088 -135760401 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr12 8522318 8522350 -135760139 + AT_rich Low_complexity Low_complexity 1 32 0 1011 196 11 0 chr12 8522585 8522769 -135759720 - AluJo SINE Alu -11 301 116 2282 253 84 46 chr12 8523240 8524286 -135758203 + L2 LINE L2 2239 3305 -8 1958 124 38 0 chr12 8524432 8524723 -135757766 - AluSx SINE Alu -10 302 1 1901 108 31 0 chr12 8525622 8525881 -135756608 + AluSq SINE Alu 34 300 -13 834 259 75 19 chr12 8525988 8526200 -135756289 - MER58A DNA MER1_type 0 224 1 3644 123 48 0 chr12 8526283 8526786 -135755703 - MER1A DNA MER1_type 0 527 1 665 312 146 14 chr12 8527424 8527719 -135754770 + LTR16C LTR ERVL 158 491 0 408 287 39 116 chr12 8528358 8528519 -135753970 + MIR SINE MIR 15 187 -75 1865 150 21 7 chr12 8528519 8528806 -135753683 + AluJb SINE Alu 13 303 -9 222 37 0 0 chr12 8528809 8528836 -135753653 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 408 287 39 116 chr12 8528836 8528928 -135753561 + MIR SINE MIR 189 252 -10 3689 166 22 42 chr12 8529279 8529531 -135752958 - L1MD2 LINE L1 0 6359 6104 1900 172 3 0 chr12 8529531 8529828 -135752661 - AluJo SINE Alu -14 298 1 3689 166 22 42 chr12 8529828 8530293 -135752196 - L1MD2 LINE L1 -255 6104 5656 2941 3 0 0 chr12 8530298 8530610 -135751879 - AluYb8 SINE Alu -6 312 1 1622 204 18 0 chr12 8533241 8533526 -135748963 + AluJo SINE Alu 11 300 -12 2202 117 7 0 chr12 8533536 8533834 -135748655 + AluSx SINE Alu 1 300 -12 2807 204 90 64 chr12 8533849 8533924 -135748565 + L1MA9 LINE L1 3166 3238 -4327 929 145 0 0 chr12 8533924 8534055 -135748434 + FLAM_C SINE Alu 1 131 -2 2807 204 90 64 chr12 8534055 8534537 -135747952 + L1MA9 LINE L1 3238 3706 -3859 3057 164 27 40 chr12 8534537 8534660 -135747829 + MER44D DNA MER2_type 4 127 -2360 2556 37 10 3 chr12 8534660 8534959 -135747530 + AluY SINE Alu 1 301 -10 3057 164 27 40 chr12 8534959 8535389 -135747100 + MER44D DNA MER2_type 127 605 0 2807 204 90 64 chr12 8535389 8535476 -135747013 + L1MA9 LINE L1 3706 3789 -3776 2152 121 14 0 chr12 8535476 8535773 -135746716 - AluSx SINE Alu -11 301 1 2807 204 90 64 chr12 8535773 8535841 -135746648 + L1MA9 LINE L1 3789 3854 -3711 351 21 0 0 chr12 8535841 8535888 -135746601 - MER41A LTR ERV1 -87 467 421 2807 204 90 64 chr12 8535888 8536468 -135746021 + L1MA9 LINE L1 3854 4560 -3005 2422 90 0 0 chr12 8536468 8536768 -135745721 + AluSg SINE Alu 1 300 -10 2807 204 90 64 chr12 8536768 8536788 -135745701 + L1MA9 LINE L1 4560 4578 -2987 3715 141 31 27 chr12 8536805 8537468 -135745021 + L1MA9 LINE L1 4975 5643 -1922 2447 144 71 2 chr12 8537468 8537885 -135744604 + L1MA9 LINE L1 7279 7731 0 3715 141 31 27 chr12 8537885 8537896 -135744593 + L1MA9 LINE L1 5643 5652 -1913 2302 94 7 0 chr12 8538439 8538746 -135743743 - AluY SINE Alu -2 309 1 181 393 105 20 chr12 8538798 8539093 -135743396 + L2 LINE L2 2948 3267 -5 13283 178 20 13 chr12 8539630 8540403 -135742086 - L1PA15 LINE L1 -2 6163 5397 2405 87 0 10 chr12 8540403 8540712 -135741777 - AluSg SINE Alu -4 306 1 13283 178 20 13 chr12 8540712 8543264 -135739225 - L1PA15 LINE L1 -768 5397 2834 621 241 71 18 chr12 8544430 8544600 -135737889 + MIR SINE MIR 2 180 -82 814 210 0 6 chr12 8544629 8544786 -135737703 + FRAM SINE Alu 1 153 -23 235 250 0 0 chr12 8544802 8544854 -135737635 + L2 LINE L2 3251 3302 -11 314 223 80 78 chr12 8545190 8545408 -135737081 - MIR SINE MIR -13 249 76 2399 75 3 0 chr12 8545940 8546234 -135736255 - AluY SINE Alu -16 295 1 2282 106 3 0 chr12 8546241 8546542 -135735947 - AluSx SINE Alu -10 302 1 38 51 0 0 chr12 8546599 8546658 -135735831 + AT_rich Low_complexity Low_complexity 1 59 0 305 253 105 19 chr12 8546738 8546900 -135735589 - L1ME LINE L1 -329 5792 5617 1112 98 24 37 chr12 8546925 8546972 -135735517 - L1PA16 LINE L1 -10 6156 6110 420 55 0 0 chr12 8546972 8547027 -135735462 + (TG)n Simple_repeat Simple_repeat 2 56 0 2243 109 3 0 chr12 8547028 8547330 -135735159 - AluSp SINE Alu -10 303 1 1112 98 24 37 chr12 8547330 8547444 -135735045 - L1PA16 LINE L1 -55 6111 5995 23 33 0 0 chr12 8547546 8547576 -135734913 + AT_rich Low_complexity Low_complexity 1 30 0 481 342 22 13 chr12 8547656 8547887 -135734602 - L1MEd LINE L1 -5394 725 493 3643 27 2 0 chr12 8548029 8548435 -135734054 - L1PA4 LINE L1 0 6155 5749 629 316 43 23 chr12 8548800 8549056 -135733433 - LTR16C LTR ERVL -94 397 137 473 239 56 56 chr12 8549217 8549305 -135733184 - L1MC4 LINE L1 -1044 6998 6908 2635 40 0 0 chr12 8549305 8549606 -135732883 - AluY SINE Alu -10 301 1 473 239 56 56 chr12 8549606 8549659 -135732830 - L1MC4 LINE L1 -1133 6909 6857 261 330 168 11 chr12 8549667 8549852 -135732637 - L1MEd LINE L1 -5664 455 242 633 296 103 38 chr12 8549885 8550311 -135732178 - ERVL LTR ERVL -2318 3446 2993 866 187 58 0 chr12 8550367 8550522 -135731967 - MER5A DNA MER1_type -25 164 1 1189 278 83 83 chr12 8550553 8550862 -135731627 - ERVL LTR ERVL -2931 2833 2525 1702 158 0 85 chr12 8550862 8551037 -135731452 - AluJb SINE Alu -23 289 151 2094 125 7 3 chr12 8551037 8551324 -135731165 - AluSx SINE Alu -24 288 1 1702 158 0 85 chr12 8551324 8551464 -135731025 - AluJb SINE Alu -161 151 1 1189 278 83 83 chr12 8551464 8551878 -135730611 - ERVL LTR ERVL -3238 2526 2110 2268 120 7 0 chr12 8552292 8552601 -135729888 - AluSx SINE Alu -1 311 1 244 167 183 17 chr12 8552873 8552933 -135729556 - LTR67 LTR ERVL -478 79 10 1034 214 96 84 chr12 8552947 8553363 -135729126 - LTR34 LTR ERV1 -4 695 275 276 95 0 0 chr12 8553363 8553405 -135729084 + L1MB7 LINE L1 5793 5834 -350 1212 219 78 62 chr12 8553405 8553431 -135729058 + MLT1A1 LTR MaLR 1 25 -340 2506 118 90 18 chr12 8553431 8553830 -135728659 - MSTA LTR MaLR 0 428 1 1212 219 78 62 chr12 8553830 8554160 -135728329 + MLT1A1 LTR MaLR 25 363 -2 291 149 0 0 chr12 8554161 8554208 -135728281 + L1MB7 LINE L1 5829 5875 -309 2076 139 3 0 chr12 8554277 8554586 -135727903 - AluSq SINE Alu -3 310 1 1291 256 56 115 chr12 8554791 8555529 -135726960 - MER21B LTR ERV1 -146 717 24 525 259 42 17 chr12 8555550 8555813 -135726676 - Charlie7 DNA MER1_type -2294 318 1 334 256 11 131 chr12 8556067 8556243 -135726246 + MLT1I LTR MaLR 237 391 -18 911 224 56 0 chr12 8557683 8557915 -135724574 + L1MC4 LINE L1 6460 6704 -1338 484 245 92 31 chr12 8560177 8560471 -135722018 + L1ME4a LINE L1 5789 6100 -21 1569 174 0 52 chr12 8561295 8561582 -135720907 - AluSx SINE Alu -40 272 1 298 339 139 38 chr12 8561646 8562038 -135720451 - L2 LINE L2 -6 3266 2771 2005 249 51 10 chr12 8562058 8562572 -135719917 - MLT1H LTR MaLR -2 547 13 943 329 158 21 chr12 8562590 8563471 -135719018 - L2 LINE L2 -566 2748 1711 2128 101 42 0 chr12 8563471 8563759 -135718730 - AluSg SINE Alu -10 300 1 943 329 158 21 chr12 8563759 8563882 -135718607 - L2 LINE L2 -1603 1711 1606 2183 112 3 10 chr12 8564574 8564879 -135717610 + AluSc SINE Alu 2 304 -5 1980 172 0 0 chr12 8564895 8565198 -135717291 - AluJb SINE Alu -9 303 1 26 0 0 0 chr12 8565399 8565425 -135717064 + AT_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr12 8565426 8565450 -135717039 + (TTA)n Simple_repeat Simple_repeat 2 25 0 491 185 22 44 chr12 8665999 8666134 -135616355 + FLAM_C SINE Alu 2 133 -10 487 284 147 10 chr12 8667101 8667298 -135615191 + MIR SINE MIR 34 257 -5 268 297 141 39 chr12 8667363 8667491 -135614998 - MIR3 SINE MIR -18 190 50 2436 70 6 21 chr12 8668074 8668402 -135614087 + L1PA7 LINE L1 5831 6153 -1 33 0 0 0 chr12 8668405 8668438 -135614051 + AT_rich Low_complexity Low_complexity 1 33 0 845 268 105 60 chr12 8668449 8668897 -135613592 - L1M4 LINE L1 -1911 4235 3768 258 32 0 0 chr12 8668917 8668948 -135613541 + (CA)n Simple_repeat Simple_repeat 2 32 0 1227 201 29 33 chr12 8668970 8669244 -135613245 - AluJb SINE Alu -3 309 37 841 99 14 57 chr12 8669482 8669623 -135612866 - Tigger5 DNA MER2_type -104 2219 2085 * 1165 224 9 22 chr12 8669619 8669851 -135612638 - Tigger5 DNA MER2_type -2091 232 4 308 276 69 14 chr12 8669853 8669998 -135612491 + L1M4 LINE L1 4485 4637 -1509 514 264 64 18 chr12 8670006 8670383 -135612106 + MLT1C LTR MaLR 6 461 -6 39 22 0 0 chr12 8671378 8671424 -135611065 + AT_rich Low_complexity Low_complexity 1 46 0 2001 157 0 0 chr12 8671833 8672132 -135610357 - AluSx SINE Alu -13 299 1 725 139 0 0 chr12 8672320 8672435 -135610054 - AluSp/q SINE Alu 0 313 199 1786 168 10 7 chr12 8672612 8672903 -135609586 + AluJb SINE Alu 1 292 -20 815 252 82 50 chr12 8673667 8674008 -135608481 + MLT2C1 LTR ERVL 44 395 -2 225 263 50 25 chr12 8674422 8674502 -135607987 - L1ME4a LINE L1 -104 6017 5936 216 0 0 0 chr12 8674543 8674567 -135607922 + (CA)n Simple_repeat Simple_repeat 2 25 0 962 175 24 0 chr12 8674611 8674777 -135607712 - AluJb SINE Alu -7 305 136 2095 144 0 0 chr12 8674779 8675085 -135607404 - AluSx SINE Alu -6 306 1 746 170 7 0 chr12 8675252 8675399 -135607090 + G-rich Low_complexity Low_complexity 5 152 0 360 0 0 0 chr12 8675401 8675441 -135607048 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 681 221 0 0 chr12 8675474 8675601 -135606888 + AluJo SINE Alu 1 127 -185 30 0 0 0 chr12 8675601 8675631 -135606858 + AT_rich Low_complexity Low_complexity 1 30 0 898 141 7 0 chr12 8675631 8675766 -135606723 - AluJb SINE Alu -176 136 1 1962 130 0 3 chr12 8675775 8676085 -135606404 - AluJb SINE Alu 0 309 1 890 189 0 78 chr12 8676085 8676247 -135606242 + AluJo SINE Alu 115 261 -51 2590 131 43 11 chr12 8676247 8676691 -135605798 - LTR22A LTR ERVK 0 458 1 890 189 0 78 chr12 8676691 8676719 -135605770 + AluJo SINE Alu 261 290 -22 1965 149 0 3 chr12 8676854 8677143 -135605346 + AluSx SINE Alu 1 288 -24 251 241 0 17 chr12 8677270 8677328 -135605161 + MER74B LTR ERVL 292 348 -274 693 281 61 40 chr12 8677343 8677556 -135604933 - MER74A LTR ERVL -306 252 32 2235 104 7 0 chr12 8677556 8677853 -135604636 - AluSq SINE Alu -14 299 1 693 281 61 40 chr12 8677853 8677867 -135604622 - MER74A LTR ERVL -526 32 20 1980 147 10 0 chr12 8677946 8678245 -135604244 - AluSx SINE Alu -10 302 1 858 165 0 0 chr12 8678267 8678400 -135604089 + AluJo SINE Alu 1 133 -169 938 141 60 0 chr12 8679893 8680042 -135602447 - FAM SINE Alu -18 167 10 349 82 279 0 chr12 8680059 8680120 -135602369 - MADE1 DNA Mariner 0 80 3 596 200 0 0 chr12 8680148 8680253 -135602236 + AluJo SINE Alu 131 235 -77 819 251 45 10 chr12 8680665 8680864 -135601625 - L1MCa LINE L1 -5684 742 537 801 153 62 157 chr12 8680911 8681185 -135601304 - AluJb SINE Alu -16 296 49 1713 205 113 98 chr12 8681244 8682008 -135600481 - LTR1B LTR ERV1 -39 981 3 348 194 119 0 chr12 8682008 8682062 -135600427 - AluS SINE Alu -246 62 1 1168 103 132 10 chr12 8682100 8682304 -135600185 - L1M3 LINE L1 -626 5557 5329 1596 167 14 22 chr12 8682409 8682684 -135599805 - AluJo SINE Alu -39 273 1 2169 125 0 13 chr12 8683031 8683336 -135599153 - AluSx SINE Alu -11 301 1 2338 98 0 3 chr12 8683389 8683694 -135598795 - AluSq SINE Alu -9 304 1 285 258 50 31 chr12 8683822 8683981 -135598508 - L1MEc LINE L1 -4674 1722 1561 349 205 26 0 chr12 8684810 8684888 -135597601 + MIR SINE MIR 183 262 0 663 263 34 0 chr12 8685108 8685283 -135597206 - MIR SINE MIR -10 252 72 2555 61 0 6 chr12 8686137 8686448 -135596041 + AluY SINE Alu 1 309 -2 572 290 80 9 chr12 8687066 8687290 -135595199 + LTR33 LTR ERVL 273 512 -9 2504 91 0 0 chr12 8687742 8688049 -135594440 + AluSx SINE Alu 1 307 -5 22 35 0 0 chr12 8688124 8688153 -135594336 + AT_rich Low_complexity Low_complexity 1 29 0 210 191 0 0 chr12 8688281 8688323 -135594166 + A-rich Low_complexity Low_complexity 5 46 0 3078 147 19 33 chr12 8688500 8689039 -135593450 - LTR26B LTR ERV1 0 531 1 2196 119 0 0 chr12 8689082 8689376 -135593113 + AluSx SINE Alu 1 294 -18 2553 66 0 0 chr12 8689483 8689785 -135592704 + AluSq SINE Alu 1 302 -11 872 137 0 0 chr12 8690050 8690174 -135592315 + FLAM_C SINE Alu 3 126 -7 2157 117 0 0 chr12 8690193 8690495 -135591994 + AluSx SINE Alu 2 303 0 2471 132 28 8 chr12 8690524 8690917 -135591572 + MSTA LTR MaLR 1 401 -27 1942 160 0 25 chr12 8690927 8691245 -135591244 - AluJo SINE Alu -1 311 2 1696 188 0 25 chr12 8691699 8691768 -135590721 + AluJo SINE Alu 1 70 -242 7780 68 13 11 chr12 8691768 8692773 -135589716 + LTR13 LTR ERVK 1 1007 0 1696 188 0 25 chr12 8692773 8693017 -135589472 + AluJo SINE Alu 70 306 -6 1650 186 6 19 chr12 8693066 8693378 -135589111 + AluJo SINE Alu 5 312 0 303 128 141 26 chr12 8693671 8693749 -135588740 + MER88 LTR ERVL 79 165 -299 * 700 233 92 33 chr12 8693679 8693919 -135588570 - MER74B LTR ERVL -72 550 297 21 0 0 0 chr12 8694072 8694093 -135588396 + AT_rich Low_complexity Low_complexity 1 21 0 220 347 11 23 chr12 8694113 8694289 -135588200 + GA-rich Low_complexity Low_complexity 2 175 0 1969 152 0 3 chr12 8694548 8694837 -135587652 + AluSx SINE Alu 1 288 -24 194 333 0 0 chr12 8694912 8694963 -135587526 - L2 LINE L2 -688 2626 2576 1494 213 3 45 chr12 8694963 8695137 -135587352 - MER90 LTR ERV1 0 614 461 2853 209 24 59 chr12 8695137 8695167 -135587322 + LTR62 LTR ERVK 2 32 -687 1906 128 42 3 chr12 8695167 8695456 -135587033 + AluSx SINE Alu 1 300 -12 2853 209 24 59 chr12 8695456 8696167 -135586322 + LTR62 LTR ERVK 32 717 -2 1494 213 3 45 chr12 8696167 8696345 -135586144 - MER90 LTR ERV1 -153 461 277 658 227 39 99 chr12 8696484 8696766 -135585723 - MER90 LTR ERV1 -310 265 1 193 329 14 0 chr12 8696852 8696922 -135585567 - L2 LINE L2 -843 2471 2401 31 0 0 0 chr12 8696959 8696990 -135585499 + AT_rich Low_complexity Low_complexity 1 31 0 1825 142 4 4 chr12 8696990 8697264 -135585225 - AluJo SINE Alu -26 286 13 188 198 37 86 chr12 8697280 8697361 -135585128 - MIR SINE MIR -105 157 81 2053 152 3 0 chr12 8697409 8697706 -135584783 + AluSx SINE Alu 1 298 -14 4220 159 28 23 chr12 8697736 8698534 -135583955 - L1MB7 LINE L1 -111 6073 5272 1741 181 3 7 chr12 8698548 8698857 -135583632 - AluJb SINE Alu -4 308 1 228 135 0 0 chr12 8698857 8698894 -135583595 - L1MB7 LINE L1 -863 5283 5247 2082 183 56 49 chr12 8698909 8699357 -135583132 - MER21A LTR ERV1 -19 912 462 1255 167 27 69 chr12 8699446 8699578 -135582911 - MER21A LTR ERV1 -185 468 332 2268 113 0 0 chr12 8699578 8699879 -135582610 + AluSx SINE Alu 1 301 -11 1255 167 27 69 chr12 8699879 8700067 -135582422 - MER21A LTR ERV1 -321 332 187 327 196 0 0 chr12 8700064 8700115 -135582374 - AluSc SINE Alu -117 182 132 * 609 200 17 8 chr12 8700116 8700236 -135582253 - FLAM_A SINE Alu -11 122 2 1191 150 39 6 chr12 8700236 8700554 -135581935 - MER39B LTR ERV1 -384 269 1 1910 229 9 9 chr12 8700555 8701005 -135581484 - L1MB7 LINE L1 -894 5252 4803 21 0 0 0 chr12 8701313 8701334 -135581155 + AT_rich Low_complexity Low_complexity 1 21 0 192 71 0 0 chr12 8701635 8701655 -135580834 + (TC)n Simple_repeat Simple_repeat 1 23 -5 2430 86 0 0 chr12 8701655 8701956 -135580533 - AluSq SINE Alu -12 301 1 192 71 0 0 chr12 8701956 8701963 -135580526 + (TC)n Simple_repeat Simple_repeat 22 28 0 803 176 0 0 chr12 8701963 8702094 -135580395 - FLAM_A SINE Alu -1 141 11 258 105 0 0 chr12 8703322 8703360 -135579129 + (A)n Simple_repeat Simple_repeat 1 38 0 185 188 138 50 chr12 8704429 8704509 -135577980 - MIR SINE MIR -146 116 30 601 338 84 20 chr12 8706192 8706689 -135575800 + L2 LINE L2 2265 2793 -521 1268 128 8 91 chr12 8706727 8706969 -135575520 - AluSg/x SINE Alu -6 306 85 1422 54 0 0 chr12 8707091 8707259 -135575230 + SVA Other Other 1219 1386 0 198 91 0 0 chr12 8707304 8707337 -135575152 + (A)n Simple_repeat Simple_repeat 1 33 0 1801 168 31 0 chr12 8707397 8707688 -135574801 - AluJb SINE Alu -12 300 1 2102 139 0 25 chr12 8708033 8708349 -135574140 - AluJb SINE Alu -4 308 1 1351 149 0 19 chr12 8708467 8708681 -135573808 - MER2 DNA MER2_type -135 210 1 1961 150 17 3 chr12 8708995 8709289 -135573200 - AluJo SINE Alu -13 299 2 410 267 87 7 chr12 8710734 8710884 -135571605 - MIR SINE MIR -1 261 100 788 161 0 0 chr12 8710914 8711038 -135571451 + FLAM_C SINE Alu 1 124 -9 7476 42 11 1 chr12 8711173 8712506 -135569983 + L1PA8 LINE L1 4830 6172 0 202 184 0 0 chr12 8712816 8712854 -135569635 + MIR3 SINE MIR 150 187 -21 2511 50 0 3 chr12 8713385 8713688 -135568801 - AluY SINE Alu -9 302 1 1136 184 23 97 chr12 8714116 8714330 -135568159 + L1MB5 LINE L1 5882 6050 -124 2547 48 0 13 chr12 8714330 8714645 -135567844 + AluY SINE Alu 1 311 0 1136 184 23 97 chr12 8714645 8714762 -135567727 + L1MB5 LINE L1 6050 6174 0 6378 115 33 12 chr12 8716134 8717083 -135565406 + LTR5 LTR ERVK 1 969 0 2255 84 28 0 chr12 8719208 8719495 -135562994 + AluSg SINE Alu 1 295 -15 342 258 136 0 chr12 8719611 8719743 -135562746 - MIR SINE MIR -7 255 106 1499 145 48 54 chr12 8719760 8720260 -135562229 + LTR47A LTR ERVL 2 450 -2 280 221 29 15 chr12 8720262 8720330 -135562159 - MIR SINE MIR -191 71 3 540 229 0 36 chr12 8720567 8720707 -135561782 - FLAM_A SINE Alu -2 140 6 1905 139 34 10 chr12 8720982 8721277 -135561212 + AluSx SINE Alu 9 310 -2 188 224 140 84 chr12 8721492 8721599 -135560890 + MIR SINE MIR 53 165 -97 189 0 0 0 chr12 8721659 8721680 -135560809 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1200 192 73 73 chr12 8721812 8722109 -135560380 - MSTD LTR MaLR 0 396 100 2211 126 0 16 chr12 8722109 8722426 -135560063 - AluSx SINE Alu 0 312 1 2030 118 4 4 chr12 8722433 8722712 -135559777 - AluSq SINE Alu -12 301 23 1200 192 73 73 chr12 8722712 8722802 -135559687 - MSTD LTR MaLR -301 95 1 24 60 0 30 chr12 8722846 8722882 -135559607 + AT_rich Low_complexity Low_complexity 1 36 -29 1426 178 85 0 chr12 8722882 8723141 -135559348 - AluJo SINE Alu -31 281 1 24 60 0 30 chr12 8723141 8723171 -135559318 + AT_rich Low_complexity Low_complexity 36 65 0 717 209 0 8 chr12 8723172 8723306 -135559183 + FLAM_C SINE Alu 1 133 0 2388 27 44 14 chr12 8723791 8724088 -135558401 - AluY SINE Alu -5 306 1 1147 124 0 0 chr12 8724198 8724351 -135558138 - AluSq SINE Alu -160 153 1 276 30 0 0 chr12 8725119 8725152 -135557337 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 2319 94 0 7 chr12 8726183 8726482 -135556007 - AluSq SINE Alu -16 297 1 23 0 0 0 chr12 8727234 8727257 -135555232 + AT_rich Low_complexity Low_complexity 1 23 0 2223 111 0 0 chr12 8727257 8727545 -135554944 - AluSq SINE Alu -24 289 2 330 322 34 42 chr12 8727557 8727675 -135554814 - MIR3 SINE MIR -52 156 40 409 247 35 46 chr12 8728933 8729107 -135553382 + MIR SINE MIR 48 219 -43 2415 96 6 0 chr12 8730400 8730733 -135551756 - L1PB2 LINE L1 -3 6148 5814 2203 102 0 0 chr12 8731496 8731823 -135550666 + AluSx SINE Alu 1 327 0 187 270 0 0 chr12 8731884 8731921 -135550568 + MER5B DNA MER1_type 1 37 -141 2166 127 0 0 chr12 8732774 8733092 -135549397 + AluSx SINE Alu 1 318 0 450 294 83 34 chr12 8733254 8733519 -135548970 + L2 LINE L2 2184 2461 -853 2419 96 0 6 chr12 8733519 8733832 -135548657 + AluSq SINE Alu 1 311 -2 180 341 49 0 chr12 8733886 8733968 -135548521 + L2 LINE L2 2564 2649 -665 282 338 19 57 chr12 8734132 8734289 -135548200 + L2 LINE L2 2942 3092 -180 2067 116 0 3 chr12 8734473 8734758 -135547731 + AluSq SINE Alu 20 303 -10 32 26 0 0 chr12 8735230 8735269 -135547220 + AT_rich Low_complexity Low_complexity 1 39 0 2083 127 17 0 chr12 8735279 8735570 -135546919 + AluSx SINE Alu 5 300 -12 1815 146 53 26 chr12 8735625 8735927 -135546562 + AluSg SINE Alu 1 310 0 180 0 0 0 chr12 8736365 8736385 -135546104 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2484 34 41 0 chr12 8736668 8736959 -135545530 - AluY SINE Alu -8 303 1 1126 113 38 0 chr12 8737028 8737187 -135545302 - AluSg/x SINE Alu -15 295 131 426 85 0 0 chr12 8737187 8737203 -135545286 + (CA)n Simple_repeat Simple_repeat 1 75 0 426 85 0 0 chr12 8737203 8737262 -135545227 + (CA)n Simple_repeat Simple_repeat 2 60 0 2277 84 3 17 chr12 8737280 8737579 -135544910 - AluSq SINE Alu -18 295 1 679 209 11 37 chr12 8737589 8737776 -135544713 + L1MA9 LINE L1 6109 6290 -22 1154 82 7 0 chr12 8737871 8738017 -135544472 + AluSp SINE Alu 123 269 -44 1994 135 14 3 chr12 8738197 8738486 -135544003 + AluSx SINE Alu 1 292 -20 1604 170 13 35 chr12 8738957 8739157 -135543332 - AluJo SINE Alu -7 305 113 2087 133 7 3 chr12 8739157 8739459 -135543030 + AluSq SINE Alu 1 303 -10 1604 170 13 35 chr12 8739459 8739569 -135542920 - AluJo SINE Alu -199 113 2 578 258 28 65 chr12 8739833 8740050 -135542439 + MER112 DNA MER1_type 23 231 -29 1804 153 14 7 chr12 8740308 8740602 -135541887 - AluJo SINE Alu -1 311 16 541 146 115 92 chr12 8741676 8741806 -135540683 - FLAM_C SINE Alu 0 133 1 920 140 0 0 chr12 8743298 8743434 -135539055 - AluSp/q SINE Alu -1 312 177 1342 142 14 14 chr12 8743945 8744156 -135538333 - AluJo SINE Alu -15 297 87 273 57 0 0 chr12 8744455 8744490 -135537999 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 2098 129 30 0 chr12 8745197 8745499 -135536990 - AluSx SINE Alu -1 311 1 215 343 0 0 chr12 8746307 8746374 -135536115 + L2 LINE L2 2992 3058 -214 930 144 0 0 chr12 8746506 8746638 -135535851 - FLAM_C SINE Alu -11 132 1 339 102 0 0 chr12 8746722 8746792 -135535697 + FLAM_A SINE Alu 85 154 0 2297 97 3 0 chr12 8746795 8747085 -135535404 - AluY SINE Alu -20 291 1 2310 115 0 3 chr12 8747085 8747389 -135535100 - AluSx SINE Alu -9 303 1 1054 157 0 0 chr12 8747408 8747561 -135534928 + FRAM SINE Alu 5 157 -19 22 56 0 0 chr12 8748255 8748291 -135534198 + AT_rich Low_complexity Low_complexity 1 36 0 1499 239 78 80 chr12 8748292 8748331 -135534158 + MLT1F1 LTR MaLR 6 44 -523 2004 127 0 3 chr12 8748331 8748636 -135533853 - AluSx SINE Alu 0 304 1 1499 239 78 80 chr12 8748636 8749131 -135533358 + MLT1F1 LTR MaLR 44 565 -2 202 157 48 36 chr12 8749155 8749214 -135533275 + (TA)n Simple_repeat Simple_repeat 1 63 -21 2503 134 53 7 chr12 8749214 8749625 -135532864 - MSTB1 LTR MaLR -2 430 1 202 157 48 36 chr12 8749625 8749648 -135532841 + (TA)n Simple_repeat Simple_repeat 63 84 0 258 317 10 10 chr12 8749838 8749939 -135532550 + GA-rich Low_complexity Low_complexity 3 103 0 2766 42 0 0 chr12 8749941 8750250 -135532239 + AluY SINE Alu 1 309 -2 638 92 122 0 chr12 8750258 8750356 -135532133 - THE1A LTR MaLR -245 110 1 7990 111 6 3 chr12 8750356 8751434 -135531055 - THE1A-int LTR MaLR 0 1580 496 2125 129 6 3 chr12 8751434 8751745 -135530744 - AluSp SINE Alu -1 312 1 7990 111 6 3 chr12 8751745 8751757 -135530732 - THE1A-int LTR MaLR -1084 496 486 482 135 21 21 chr12 8751900 8751996 -135530493 - AluSg1 SINE Alu -212 97 2 2276 125 0 0 chr12 8752076 8752388 -135530101 + AluSq SINE Alu 1 312 -1 24 32 0 0 chr12 8752442 8752473 -135530016 + AT_rich Low_complexity Low_complexity 1 31 0 585 224 80 50 chr12 8753044 8753245 -135529244 - L1ME1 LINE L1 0 6166 5960 705 199 7 7 chr12 8753245 8753381 -135529108 - FLAM_C SINE Alu -4 139 4 1120 194 95 11 chr12 8753383 8753667 -135528822 - L1ME1 LINE L1 -198 5968 5661 1962 138 23 7 chr12 8753788 8754093 -135528396 - AluJb SINE Alu -2 310 1 22 0 0 0 chr12 8754214 8754236 -135528253 + AT_rich Low_complexity Low_complexity 1 22 0 828 230 6 0 chr12 8754263 8754437 -135528052 + FRAM SINE Alu 1 175 -1 462 18 0 0 chr12 8754755 8754810 -135527679 + (TG)n Simple_repeat Simple_repeat 1 55 0 653 161 42 17 chr12 8755534 8755652 -135526837 + FLAM_C SINE Alu 5 125 -18 278 352 9 9 chr12 8757460 8757565 -135524924 - L2 LINE L2 0 3272 3168 * 1832 243 84 16 chr12 8757558 8757635 -135524854 + L2 LINE L2 2183 2253 -1061 2565 96 34 6 chr12 8757635 8757989 -135524500 - THE1B LTR MaLR 0 364 1 1832 243 84 16 chr12 8757989 8758553 -135523936 + L2 LINE L2 2253 2868 -446 38 39 0 0 chr12 8758859 8758911 -135523578 + AT_rich Low_complexity Low_complexity 1 52 0 1789 153 3 7 chr12 8758911 8759198 -135523291 - AluJb SINE Alu -26 286 1 4460 130 19 87 chr12 8759474 8759652 -135522837 - L1MA9 LINE L1 -30 6282 6093 1748 167 13 20 chr12 8759652 8759951 -135522538 - AluJb SINE Alu -15 297 1 4460 130 19 87 chr12 8759951 8760103 -135522386 - L1MA9 LINE L1 -219 6093 5932 2413 97 0 3 chr12 8760103 8760414 -135522075 - AluSx SINE Alu -2 310 1 4460 130 19 87 chr12 8760414 8760979 -135521510 - L1MA9 LINE L1 -380 5932 5447 2416 83 0 22 chr12 8761027 8761341 -135521148 + AluSx SINE Alu 1 307 -5 3078 196 57 76 chr12 8761363 8761745 -135520744 - MER21B LTR ERV1 -19 844 456 1990 145 3 10 chr12 8761745 8762042 -135520447 + AluSx SINE Alu 1 295 -17 3078 196 57 76 chr12 8762042 8762506 -135519983 - MER21B LTR ERV1 -407 456 14 930 116 14 0 chr12 8762523 8762669 -135519820 - L1MA9 LINE L1 -861 5451 5304 1697 243 48 42 chr12 8762670 8762704 -135519785 + LTR24B LTR ERV1 1 33 -543 2199 115 11 0 chr12 8762704 8762991 -135519498 + AluSq SINE Alu 1 290 -23 1697 243 48 42 chr12 8762991 8763548 -135518941 + LTR24B LTR ERV1 33 569 -7 6839 174 40 48 chr12 8763550 8763612 -135518877 - L1 LINE L1 -844 5302 5241 1947 150 0 13 chr12 8763612 8763912 -135518577 - AluJb SINE Alu -16 296 1 6839 174 40 48 chr12 8763912 8764337 -135518152 - L1 LINE L1 -905 5241 4814 2102 113 18 0 chr12 8764337 8764612 -135517877 + AluSx SINE Alu 5 287 -25 204 40 0 0 chr12 8764612 8764637 -135517852 + (CA)n Simple_repeat Simple_repeat 2 26 0 6839 174 40 48 chr12 8764644 8764932 -135517557 - L1 LINE L1 -1332 4814 4525 1849 157 35 0 chr12 8764932 8765218 -135517271 - AluJb SINE Alu -16 296 1 6839 174 40 48 chr12 8765218 8766035 -135516454 - L1 LINE L1 -1621 4525 3721 2309 119 3 0 chr12 8766056 8766367 -135516122 - AluSx SINE Alu 0 312 1 1022 97 0 8 chr12 8766371 8766505 -135515984 - AluSq/x SINE Alu -180 133 1 2127 126 7 0 chr12 8767517 8767810 -135514679 + AluSx SINE Alu 4 298 -14 186 234 43 0 chr12 8767877 8767924 -135514565 - L3 LINE CR1 -4 1573 1525 21 0 0 0 chr12 8768070 8768091 -135514398 + AT_rich Low_complexity Low_complexity 1 21 0 5667 83 11 48 chr12 8768091 8768992 -135513497 + SVA Other Other 1 868 -518 1240 106 43 67 chr12 8769050 8769495 -135512994 + SVA Other Other 433 866 -520 6528 70 20 37 chr12 8769559 8770530 -135511959 + SVA Other Other 433 1386 0 222 62 0 0 chr12 8770575 8770607 -135511882 + (A)n Simple_repeat Simple_repeat 1 32 0 677 279 48 14 chr12 8770668 8770958 -135511531 - AluJb SINE Alu -2 300 1 3320 86 2 29 chr12 8771181 8771209 -135511280 - THE1A-int LTR MaLR -1136 444 417 2254 86 0 7 chr12 8771209 8771518 -135510971 + AluSg1 SINE Alu 1 307 0 3320 86 2 29 chr12 8771518 8771944 -135510545 - THE1A-int LTR MaLR -1163 417 1 2588 83 23 9 chr12 8771944 8772294 -135510195 - THE1A LTR MaLR 0 355 1 1207 197 68 4 chr12 8772294 8772496 -135509993 + MSTB LTR MaLR 162 384 -42 1977 117 0 4 chr12 8772496 8772760 -135509729 - AluSq SINE Alu -50 263 1 1207 197 68 4 chr12 8772760 8772806 -135509683 + MSTB LTR MaLR 384 426 0 515 272 142 54 chr12 8772940 8773176 -135509313 - MLT1H1 LTR MaLR -16 533 319 2301 107 0 3 chr12 8773176 8773475 -135509014 - AluSx SINE Alu -14 298 1 515 272 142 54 chr12 8773475 8773689 -135508800 - MLT1H1 LTR MaLR -230 319 1 2557 64 0 3 chr12 8773805 8774117 -135508372 - AluY SINE Alu 0 311 1 1999 145 0 29 chr12 8774118 8774428 -135508061 - AluSx SINE Alu -11 301 1 2319 100 10 0 chr12 8774439 8774739 -135507750 - AluSx SINE Alu -9 303 1 254 315 87 17 chr12 8774765 8775111 -135507378 + L2 LINE L2 1893 2262 -1052 1244 207 104 85 chr12 8775113 8775659 -135506830 - LTR24B LTR ERV1 -5 630 28 1533 200 3 14 chr12 8775659 8775954 -135506535 - AluJb SINE Alu -20 292 1 2369 115 0 0 chr12 8775968 8776280 -135506209 - AluSx SINE Alu 0 312 1 22 0 0 0 chr12 8776287 8776309 -135506180 + AT_rich Low_complexity Low_complexity 1 22 0 334 323 98 19 chr12 8776960 8777276 -135505213 + L2 LINE L2 2473 2813 -501 1731 174 45 0 chr12 8777330 8777500 -135504989 - AluJb SINE Alu -8 304 114 283 0 47 23 chr12 8777500 8777543 -135504946 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1731 174 45 0 chr12 8777543 8777659 -135504830 - AluJb SINE Alu -198 114 5 839 131 0 51 chr12 8777760 8777897 -135504592 - FLAM_C SINE Alu -3 130 1 2415 82 10 0 chr12 8777901 8778207 -135504282 - AluSp SINE Alu -2 311 3 2156 107 3 35 chr12 8778753 8779072 -135503417 - AluSx SINE Alu -3 309 1 4072 97 2 23 chr12 8779401 8779746 -135502743 + MER41A LTR ERV1 1 331 -223 2393 48 7 14 chr12 8779746 8780040 -135502449 - AluY SINE Alu -19 292 1 4072 97 2 23 chr12 8780040 8780260 -135502229 + MER41A LTR ERV1 331 554 0 1480 146 124 51 chr12 8780570 8780845 -135501644 - AluJb SINE Alu -16 296 2 1707 249 116 57 chr12 8780930 8781697 -135500792 + MER21B LTR ERV1 1 812 -51 2249 86 0 10 chr12 8782072 8782385 -135500104 + AluY SINE Alu 1 310 -1 838 87 17 0 chr12 8782403 8782518 -135499971 - AluSp SINE Alu -196 117 1 3116 114 7 4 chr12 8782519 8782982 -135499507 - L1MC1 LINE L1 -355 5978 5515 227 250 16 0 chr12 8782982 8783046 -135499443 + MLT1J2 LTR MaLR 73 137 -313 1125 188 59 86 chr12 8783046 8783329 -135499160 - L1MC/D LINE L1 -743 5403 5114 2181 121 0 0 chr12 8783329 8783626 -135498863 - AluSq SINE Alu -12 301 5 1125 188 59 86 chr12 8783626 8783756 -135498733 - L1MC/D LINE L1 -1032 5114 5078 2103 124 3 0 chr12 8783756 8784055 -135498434 - AluSx SINE Alu -12 300 1 1125 188 59 86 chr12 8784055 8784216 -135498273 - L1MC/D LINE L1 -1068 5078 4914 1850 152 21 7 chr12 8784216 8784505 -135497984 - AluSx SINE Alu -19 293 1 2026 202 70 98 chr12 8784526 8785193 -135497296 - L1MC/D LINE L1 -1793 4353 3705 229 175 0 0 chr12 8785192 8785232 -135497257 - L1MC/D LINE L1 -2813 3333 3294 * 1854 110 23 58 chr12 8785232 8785392 -135497097 - AluSx SINE Alu -11 301 156 2322 78 0 3 chr12 8785392 8785686 -135496803 - AluSc SINE Alu -14 295 3 1854 110 23 58 chr12 8785686 8785833 -135496656 - AluSx SINE Alu -156 156 5 240 111 0 0 chr12 8785837 8785873 -135496616 + (TCCCC)n Simple_repeat Simple_repeat 4 39 0 709 190 123 0 chr12 8785874 8786037 -135496452 - AluSg/x SINE Alu -9 303 121 2486 53 0 31 chr12 8786043 8786364 -135496125 - AluY SINE Alu 0 311 1 232 355 65 13 chr12 8786475 8786630 -135495859 - MER5A DNA MER1_type 0 189 27 188 250 23 0 chr12 8786660 8786704 -135495785 - MER5A DNA MER1_type 0 189 145 362 121 95 78 chr12 8786706 8786822 -135495667 - MER53 DNA DNA -1 188 71 200 368 0 0 chr12 8787068 8787155 -135495334 + T-rich Low_complexity Low_complexity 3 89 0 272 237 17 0 chr12 8787200 8787259 -135495230 + CT-rich Low_complexity Low_complexity 2 61 0 195 42 0 0 chr12 8787400 8787424 -135495065 + (A)n Simple_repeat Simple_repeat 1 24 0 2307 107 0 3 chr12 8788409 8788718 -135493771 - AluSx SINE Alu -4 308 1 21 71 0 0 chr12 8789033 8789075 -135493414 + AT_rich Low_complexity Low_complexity 1 42 0 640 227 47 41 chr12 8790077 8790225 -135492264 + MIR SINE MIR 1 152 -110 2260 121 0 0 chr12 8790225 8790531 -135491958 + AluSc SINE Alu 1 306 -3 640 227 47 41 chr12 8790531 8790554 -135491935 + MIR SINE MIR 152 173 -89 868 170 22 0 chr12 8790757 8790892 -135491597 - AluJo SINE Alu -61 251 114 1976 137 19 3 chr12 8790909 8791216 -135491273 + AluSx SINE Alu 1 312 0 205 296 35 17 chr12 8791762 8791877 -135490612 + MIR SINE MIR 102 218 -44 199 241 0 37 chr12 8792034 8792088 -135490401 - MER5A DNA MER1_type -95 94 43 197 245 0 20 chr12 8792046 8792095 -135490394 + MER5A DNA MER1_type 118 165 -24 * 2213 131 0 3 chr12 8792967 8793280 -135489209 - AluSx SINE Alu 0 312 1 336 244 100 11 chr12 8793476 8793566 -135488923 - MER5B DNA MER1_type -3 175 78 2190 94 40 7 chr12 8793615 8793914 -135488575 + AluSx SINE Alu 1 309 -3 683 184 0 0 chr12 8793914 8794028 -135488461 - AluJo/FLAM SINE Alu -184 118 5 2165 114 10 0 chr12 8794042 8794348 -135488141 - AluSq SINE Alu -4 309 1 480 239 168 19 chr12 8794586 8794795 -135487694 - MIR SINE MIR 0 262 23 248 49 49 0 chr12 8794833 8794874 -135487615 + (CCCCG)n Simple_repeat Simple_repeat 3 45 0 2389 81 13 0 chr12 8795349 8795647 -135486842 - AluSp SINE Alu -11 302 1 678 236 65 10 chr12 8796139 8796338 -135486151 - MIR SINE MIR -21 241 32 215 216 136 56 chr12 8796737 8796862 -135485627 - MIR SINE MIR -67 195 61 42 48 0 0 chr12 8797485 8797548 -135484941 + GC_rich Low_complexity Low_complexity 1 63 0 2095 140 7 0 chr12 8800434 8800734 -135481755 + AluSx SINE Alu 1 302 -10 2187 123 0 3 chr12 8801373 8801673 -135480816 + AluSx SINE Alu 1 299 -13 2240 126 7 0 chr12 8802655 8802965 -135479524 + AluSx SINE Alu 1 312 0 1349 184 43 35 chr12 8802989 8803244 -135479245 - AluJo SINE Alu -24 288 32 828 184 0 0 chr12 8803246 8803371 -135479118 - AluJo/FLAM SINE Alu -187 125 1 358 279 103 12 chr12 8803372 8803537 -135478952 + MIR SINE MIR 67 246 -16 2122 132 7 3 chr12 8803753 8804048 -135478441 + AluSx SINE Alu 1 296 -16 1235 189 70 12 chr12 8804363 8804622 -135477867 + AluJo SINE Alu 13 286 -26 261 0 0 0 chr12 8804622 8804651 -135477838 + (CA)n Simple_repeat Simple_repeat 2 30 0 2438 101 0 0 chr12 8804845 8805151 -135477338 + AluSx SINE Alu 1 306 -6 1854 186 51 70 chr12 8805266 8805739 -135476750 - MLT2C2 LTR ERVL 0 464 1 2244 113 0 16 chr12 8805783 8806093 -135476396 - AluSq SINE Alu -6 307 3 2121 133 0 10 chr12 8806095 8806404 -135476085 - AluSq SINE Alu -7 306 1 3556 199 127 13 chr12 8806698 8807473 -135475016 - MER21B LTR ERV1 0 863 1 1464 107 207 15 chr12 8809328 8809599 -135472890 + MER44D DNA MER2_type 17 609 0 1424 171 8 28 chr12 8809637 8809909 -135472580 - AluSx SINE Alu 0 301 35 2180 128 13 0 chr12 8809929 8810255 -135472234 - AluSx SINE Alu 0 330 1 860 160 0 14 chr12 8810495 8810639 -135471850 + FLAM_C SINE Alu 1 142 -1 1438 125 0 37 chr12 8810683 8810899 -135471590 + AluSg/x SINE Alu 89 296 -14 807 167 28 21 chr12 8810916 8811060 -135471429 + FRAM SINE Alu 18 162 -14 1284 20 33 0 chr12 8811173 8811325 -135471164 - L1PA3 LINE L1 0 6155 5999 572 101 0 71 chr12 8811820 8811919 -135470570 - AluSp/q SINE Alu -16 297 206 940 161 77 0 chr12 8811922 8812090 -135470399 + AluSp SINE Alu 131 311 -2 555 204 80 0 chr12 8813933 8814046 -135468443 + FLAM_A SINE Alu 13 134 -8 2044 116 24 3 chr12 8814875 8815169 -135467320 - AluSx SINE Alu -8 304 5 207 0 0 0 chr12 8816081 8816104 -135466385 + (T)n Simple_repeat Simple_repeat 1 23 0 917 115 0 0 chr12 8816375 8816505 -135465984 - FRAM SINE Alu -1 175 46 228 67 0 0 chr12 8816701 8816731 -135465758 + (T)n Simple_repeat Simple_repeat 1 30 0 217 208 208 0 chr12 8816732 8816804 -135465685 - MIR SINE MIR -53 209 123 539 174 114 0 chr12 8816843 8816975 -135465514 + L1MB7 LINE L1 6038 6184 0 2116 108 4 0 chr12 8818013 8818291 -135464198 + AluSc SINE Alu 1 279 -30 369 0 0 0 chr12 8818319 8818360 -135464129 + (TG)n Simple_repeat Simple_repeat 2 42 0 2690 188 19 61 chr12 8818367 8819005 -135463484 - L1MC1 LINE L1 -18 6315 5705 2287 92 0 0 chr12 8819010 8819318 -135463171 - AluSq SINE Alu 0 308 1 237 244 165 35 chr12 8820019 8820134 -135462355 - L2 LINE L2 -10 3303 3174 2161 86 11 0 chr12 8820209 8820489 -135462000 - AluSq SINE Alu -30 283 1 569 167 11 0 chr12 8820769 8820859 -135461630 - Tigger1 DNA MER2_type -1 2417 2327 * 12167 130 51 33 chr12 8820856 8821388 -135461101 - Tigger1 DNA MER2_type -276 2142 1621 2403 98 0 0 chr12 8821388 8821693 -135460796 - AluSx SINE Alu -7 305 1 12167 130 51 33 chr12 8821693 8823264 -135459225 - Tigger1 DNA MER2_type -797 1621 1 884 244 166 57 chr12 8823289 8823454 -135459035 - L1M3d LINE L1 -4516 2511 2365 1414 175 94 21 chr12 8823454 8823632 -135458857 - AluJb SINE Alu -5 307 99 270 0 0 0 chr12 8823632 8823662 -135458827 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1414 175 94 21 chr12 8823662 8823769 -135458720 - AluJb SINE Alu -213 99 1 884 244 166 57 chr12 8823769 8824217 -135458272 - L1M3d LINE L1 -4662 2365 1831 1503 254 141 21 chr12 8824255 8824766 -135457723 - L1M3d LINE L1 -6458 572 1 1600 133 17 0 chr12 8824920 8825160 -135457329 - AluSx SINE Alu -5 307 64 2130 166 39 52 chr12 8825335 8825505 -135456984 - L1MC1 LINE L1 -620 5713 5542 2150 134 0 0 chr12 8825505 8825797 -135456692 - AluSx SINE Alu -20 292 1 2130 166 39 52 chr12 8825797 8826148 -135456341 - L1MC1 LINE L1 -791 5542 5200 30 45 0 0 chr12 8826236 8826280 -135456209 + AT_rich Low_complexity Low_complexity 1 44 0 1719 167 128 8 chr12 8826313 8826770 -135455719 - L1MCa LINE L1 -3952 2474 2063 222 91 0 0 chr12 8826870 8826903 -135455586 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1935 129 21 14 chr12 8826906 8827186 -135455303 - AluSx SINE Alu -30 282 1 233 200 0 173 chr12 8827188 8827263 -135455226 - MER2 DNA MER2_type -1 344 283 1947 131 31 10 chr12 8827274 8827565 -135454924 + AluSx SINE Alu 1 297 -15 442 205 63 71 chr12 8827619 8827746 -135454743 - MER8 DNA MER2_type -89 150 25 1472 95 11 0 chr12 8877776 8877966 -135404523 - AluSp SINE Alu -121 192 1 2168 225 176 21 chr12 8878248 8878455 -135404034 - L1MD2 LINE L1 0 8042 7868 1469 157 142 19 chr12 8878455 8878723 -135403766 - AluJb SINE Alu -1 301 1 2168 225 176 21 chr12 8878723 8878756 -135403733 - L1MD2 LINE L1 -174 7868 7841 2242 99 0 3 chr12 8878756 8879050 -135403439 - AluSq SINE Alu -20 293 1 2168 225 176 21 chr12 8879050 8879643 -135402846 - L1MD2 LINE L1 -201 7841 7341 2223 114 7 0 chr12 8879643 8879951 -135402538 - AluSp SINE Alu -3 310 1 2168 225 176 21 chr12 8879951 8880059 -135402430 - L1MD2 LINE L1 -701 7341 6241 972 221 9 14 chr12 8880059 8880276 -135402213 - AluJo SINE Alu -91 221 6 1107 186 66 121 chr12 8881032 8881293 -135401196 - MLT1A2 LTR MaLR -2 372 98 851 165 0 0 chr12 8881293 8881420 -135401069 - FLAM_C SINE Alu -6 127 1 1412 196 46 14 chr12 8881425 8881710 -135400779 - AluJb SINE Alu -18 294 1 1107 186 66 121 chr12 8881710 8881823 -135400666 - MLT1A2 LTR MaLR -280 94 13 1855 166 10 3 chr12 8881847 8882143 -135400346 - AluSx SINE Alu -14 298 1 2255 92 14 0 chr12 8882287 8882582 -135399907 - L1PB2 LINE L1 -1 6150 5852 1963 152 0 14 chr12 8882728 8882864 -135399625 + AluSx SINE Alu 1 137 -175 2110 106 10 20 chr12 8882864 8883166 -135399323 + AluSg SINE Alu 1 299 -11 1963 152 0 14 chr12 8883166 8883326 -135399163 + AluSx SINE Alu 137 293 -19 955 104 6 104 chr12 8883398 8883436 -135399053 + L1PA16 LINE L1 6002 6042 -124 2143 73 4 4 chr12 8883436 8883709 -135398780 + AluY SINE Alu 1 273 -38 955 104 6 104 chr12 8883709 8883843 -135398646 + L1PA16 LINE L1 6042 6157 -9 1906 98 91 0 chr12 8883861 8884135 -135398354 - AluSg SINE Alu -11 299 1 2291 105 0 3 chr12 8885011 8885315 -135397174 + AluSx SINE Alu 3 305 -7 24 32 0 0 chr12 8886548 8886579 -135395910 + AT_rich Low_complexity Low_complexity 1 31 0 1727 137 19 72 chr12 8886590 8886783 -135395706 - AluSx SINE Alu -8 304 133 2182 80 4 0 chr12 8886783 8887059 -135395430 - L1PA6 LINE L1 0 6154 5878 1727 137 19 72 chr12 8887059 8887186 -135395303 - AluSx SINE Alu -179 133 1 2176 116 3 0 chr12 8887339 8887631 -135394858 - AluSp SINE Alu -20 293 1 2096 136 0 0 chr12 8887631 8887932 -135394557 - AluSx SINE Alu -11 301 1 2240 90 10 7 chr12 8888259 8888560 -135393929 + AluSx SINE Alu 5 306 -6 1377 179 86 14 chr12 8888698 8888977 -135393512 - AluJo SINE Alu -13 299 1 293 264 147 56 chr12 8889378 8889575 -135392914 + L2 LINE L2 3095 3309 -4 2312 102 7 0 chr12 8889697 8889991 -135392498 - AluSx SINE Alu -16 296 1 1403 178 102 29 chr12 8890142 8890456 -135392033 + MER44D DNA MER2_type 2 608 -1 351 0 0 0 chr12 8890457 8890496 -135391993 + (TG)n Simple_repeat Simple_repeat 1 39 0 241 172 47 0 chr12 8890497 8890561 -135391928 + (TA)n Simple_repeat Simple_repeat 1 67 0 1900 133 25 7 chr12 8890601 8890886 -135391603 + AluSg SINE Alu 1 290 -20 22 0 0 0 chr12 8890966 8890988 -135391501 + AT_rich Low_complexity Low_complexity 1 22 0 2032 111 24 0 chr12 8891159 8891447 -135391042 - AluSc SINE Alu -14 295 1 273 248 17 43 chr12 8891514 8891631 -135390858 - L1ME LINE L1 -244 6271 6158 1060 224 23 14 chr12 8892205 8892424 -135390065 - MER58A DNA MER1_type -3 221 1 258 195 115 0 chr12 8892537 8892624 -135389865 - MER5C DNA MER1_type 0 324 228 370 286 50 8 chr12 8892636 8892755 -135389734 - MER5C DNA MER1_type -200 124 1 1983 112 4 0 chr12 8894229 8894496 -135387993 + AluSx SINE Alu 20 287 -25 276 260 13 0 chr12 8894564 8894641 -135387848 + L1M4 LINE L1 5004 5081 -1065 195 42 0 0 chr12 8894654 8894678 -135387811 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2311 92 0 16 chr12 8894680 8894985 -135387504 - AluSq SINE Alu -13 300 1 664 324 121 4 chr12 8895034 8895290 -135387199 - MLT1H1 LTR MaLR -214 341 56 300 175 0 0 chr12 8895360 8895417 -135387072 + L1 LINE L1 4777 4833 -1313 1521 274 96 54 chr12 8896436 8896711 -135385778 + L2 LINE L2 2100 2362 -952 201 74 0 0 chr12 8896711 8896738 -135385751 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1521 274 96 54 chr12 8896738 8896750 -135385739 + L2 LINE L2 2362 2372 -942 1598 149 7 76 chr12 8896750 8896899 -135385590 - AluJb SINE Alu -32 280 161 2063 134 7 0 chr12 8896899 8897189 -135385300 - AluSx SINE Alu -19 293 2 1598 149 7 76 chr12 8897189 8897340 -135385149 - AluJb SINE Alu -151 161 1 1521 274 96 54 chr12 8897340 8897666 -135384823 + L2 LINE L2 2372 2750 -564 1464 157 71 48 chr12 8897666 8897811 -135384678 + AluJb SINE Alu 1 141 -171 1889 160 7 7 chr12 8897811 8898111 -135384378 + AluSx SINE Alu 1 300 -12 1464 157 71 48 chr12 8898111 8898259 -135384230 + AluJb SINE Alu 141 301 -11 1521 274 96 54 chr12 8898259 8898350 -135384139 + L2 LINE L2 2750 2836 -478 420 227 31 16 chr12 8898355 8898483 -135384006 + L1ME3A LINE L1 5839 5968 -202 1968 131 34 7 chr12 8898624 8898921 -135383568 - AluSx SINE Alu -7 305 1 1084 172 252 48 chr12 8899177 8899427 -135383062 + AluJo SINE Alu 1 301 -1 286 263 70 72 chr12 8899697 8899899 -135382590 - L1ME LINE L1 -527 6037 5835 896 111 0 15 chr12 8899899 8900034 -135382455 - FLAM_C SINE Alu 0 133 1 286 263 70 72 chr12 8900034 8900204 -135382285 - L1ME LINE L1 -729 5835 5666 769 214 0 0 chr12 8900231 8900357 -135382132 - FLAM_C SINE Alu -16 127 2 387 299 101 37 chr12 8900361 8900816 -135381673 - L1ME LINE L1 -872 5668 5185 2054 120 11 0 chr12 8901053 8901336 -135381153 + AluSx SINE Alu 1 286 -26 282 258 26 17 chr12 8901394 8901570 -135380919 - L1ME LINE L1 -689 5473 5297 265 220 202 18 chr12 8901573 8901682 -135380807 - MER20B DNA MER1_type -654 129 1 7806 40 17 0 chr12 8901883 8902865 -135379624 - L1PA5 LINE L1 0 6154 5168 1057 185 32 5 chr12 8903005 8903194 -135379295 + AluJb SINE Alu 1 194 -118 2238 103 0 15 chr12 8903351 8903680 -135378809 - LTR17 LTR ERV1 -456 324 1 2502 49 0 6 chr12 8903680 8903987 -135378502 - HERV17 LTR ERV1 0 8626 6834 302 77 0 0 chr12 8903963 8904002 -135378487 - HERV17 LTR ERV1 -1078 7548 7510 * 1158 82 32 0 chr12 8903998 8904156 -135378333 - HERV17 LTR ERV1 -1479 7147 6985 * 41666 53 15 3 chr12 8904147 8909900 -135372589 - HERV17 LTR ERV1 -2724 5902 1 3684 89 42 4 chr12 8909900 8910406 -135372083 - LTR17 LTR ERV1 0 780 256 351 323 94 45 chr12 8910408 8911097 -135371392 - L1ME LINE L1 -2409 4131 3280 22 35 0 0 chr12 8911210 8911239 -135371250 + AT_rich Low_complexity Low_complexity 1 29 0 322 237 75 16 chr12 8911337 8911525 -135370964 - L1MDa LINE L1 -3890 2650 2453 324 255 7 128 chr12 8911845 8911908 -135370581 - L2 LINE L2 0 3313 3275 2059 120 34 0 chr12 8911908 8912199 -135370290 - AluSq SINE Alu -12 301 1 324 255 7 128 chr12 8912199 8912276 -135370213 - L2 LINE L2 -38 3275 3190 3786 157 55 70 chr12 8912576 8913444 -135369045 - MER21A LTR ERV1 -3 860 1 2191 125 13 0 chr12 8913816 8914121 -135368368 - AluSx SINE Alu -3 309 1 21 0 0 0 chr12 8914911 8914932 -135367557 + AT_rich Low_complexity Low_complexity 1 21 0 261 83 0 0 chr12 8919148 8919184 -135363305 + (T)n Simple_repeat Simple_repeat 1 36 0 2123 121 0 3 chr12 8922996 8923293 -135359196 + AluSq SINE Alu 1 296 -17 853 158 107 23 chr12 8925297 8925474 -135357015 - Tigger3(Golem) DNA MER2_type -33 2996 2805 1951 109 31 3 chr12 8925488 8925782 -135356707 + AluSx SINE Alu 1 302 -10 1195 111 34 58 chr12 8925789 8925997 -135356492 + AluSx SINE Alu 2 204 -108 1648 147 43 0 chr12 8926004 8926283 -135356206 + AluJb SINE Alu 1 291 -21 384 283 123 37 chr12 8926333 8926731 -135355758 - LTR16B LTR ERVL -1 463 12 532 338 37 37 chr12 8926819 8927147 -135355342 - HERVL LTR ERVL -2464 3190 2863 2239 68 0 4 chr12 8927212 8927493 -135354996 + AluSg SINE Alu 21 300 -10 363 315 168 0 chr12 8927499 8927642 -135354847 - HERVL LTR ERVL -2146 2850 2684 1629 161 161 13 chr12 8927643 8928015 -135354474 - MSTA LTR MaLR -1 427 1 5459 184 45 9 chr12 8928015 8929012 -135353477 - MSTA-int LTR MaLR 0 1651 619 38093 92 36 21 chr12 8929012 8935574 -135346915 + HERV9 LTR ERV1 17 4944 0 559 175 73 32 chr12 8935574 8935778 -135346711 + HERV9 LTR ERV1 728 1138 -5758 330 180 0 0 chr12 8935780 8935841 -135346648 + HERV9 LTR ERV1 7504 7564 -835 * 7736 100 69 87 chr12 8935837 8938027 -135344462 + pTR5 LTR ERV1 504 2438 0 2232 76 0 0 chr12 8938044 8938334 -135344155 - AluY SINE Alu -21 290 1 789 206 6 6 chr12 8938337 8938497 -135343992 - MSTA-int LTR MaLR -1040 611 452 * 1513 135 37 0 chr12 8938486 8938731 -135343758 - MSTA-int LTR MaLR -1397 254 1 2200 132 116 0 chr12 8938731 8939103 -135343386 - MSTA LTR MaLR -13 415 1 1715 130 0 88 chr12 8939364 8939510 -135342979 + AluSx SINE Alu 1 108 -204 2175 122 0 0 chr12 8939510 8939822 -135342667 + AluSx SINE Alu 1 312 0 1715 130 0 88 chr12 8939822 8939982 -135342507 + AluSx SINE Alu 108 280 -32 252 111 0 0 chr12 8940046 8940091 -135342398 + (TTCC)n Simple_repeat Simple_repeat 2 46 0 3179 135 86 2 chr12 8940149 8940621 -135341868 - L1MB1 LINE L1 -1 6167 5637 228 86 0 0 chr12 8940621 8940656 -135341833 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3179 135 86 2 chr12 8940656 8940755 -135341734 - L1MB1 LINE L1 -531 5637 5548 321 333 82 6 chr12 8940937 8941108 -135341381 - L1ME4a LINE L1 -169 5952 5769 1783 152 3 21 chr12 8941179 8941469 -135341020 - AluJo SINE Alu -24 288 4 540 245 0 0 chr12 8941543 8941641 -135340848 + FLAM_A SINE Alu 3 100 -42 7462 46 3 0 chr12 8941641 8943253 -135339236 + L1PA5 LINE L1 4555 6154 0 3058 55 0 0 chr12 8943253 8943655 -135338834 + L1PA6 LINE L1 5770 6176 0 21 36 0 0 chr12 8944067 8944095 -135338394 + AT_rich Low_complexity Low_complexity 1 28 0 2200 84 14 3 chr12 8944106 8944402 -135338087 + AluSq SINE Alu 1 299 -14 3022 143 51 8 chr12 8944877 8945367 -135337122 - MER9 LTR ERVK 0 511 1 2194 70 0 20 chr12 8945736 8946038 -135336451 + AluY SINE Alu 1 296 -15 333 102 45 23 chr12 8946660 8946748 -135335741 + (TA)n Simple_repeat Simple_repeat 1 90 0 2823 74 112 0 chr12 8946753 8947156 -135335333 + LTR7 LTR ERV1 1 448 -2 19743 103 16 33 chr12 8947158 8950199 -135332290 + HERVH LTR ERV1 1 2987 -4726 917 135 20 0 chr12 8950193 8950341 -135332148 + HERVH LTR ERV1 3140 3290 -4423 * 3617 89 4 6 chr12 8950331 8950834 -135331655 + HERVH LTR ERV1 3492 3993 -3720 2955 151 0 2 chr12 8950836 8951454 -135331035 + HERVH LTR ERV1 4488 5149 -2564 1414 130 19 0 chr12 8951455 8951671 -135330818 + HERVH LTR ERV1 5600 5819 -1894 2299 99 59 13 chr12 8951671 8952044 -135330445 + HERVH LTR ERV1 7324 7713 0 2897 71 101 0 chr12 8952044 8952451 -135330038 + LTR7 LTR ERV1 1 448 -2 1710 93 4 4 chr12 8952600 8952837 -135329652 - AluSg SINE Alu -15 295 59 1722 115 4 4 chr12 8952837 8953079 -135329410 + AluSp SINE Alu 10 252 -61 1009 112 0 0 chr12 8953079 8953222 -135329267 + AluSg/x SINE Alu 167 309 -3 262 200 0 0 chr12 8953353 8953398 -135329091 - L2 LINE L2 -7 3306 3262 2101 62 31 14 chr12 8953461 8953750 -135328739 + AluY SINE Alu 1 294 -17 350 103 103 12 chr12 8954390 8954555 -135327934 + (TA)n Simple_repeat Simple_repeat 1 180 0 206 138 17 69 chr12 8954563 8954621 -135327868 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 310 159 91 57 chr12 8954627 8954715 -135327774 - L1MC4 LINE L1 -1340 6702 6612 327 112 96 0 chr12 8954718 8954843 -135327646 + (TA)n Simple_repeat Simple_repeat 1 137 0 2283 77 8 2 chr12 8954848 8955205 -135327284 + LTR7 LTR ERV1 1 448 -2 213 132 0 26 chr12 8955212 8955250 -135327239 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 2211 80 7 7 chr12 8955257 8955556 -135326933 - AluSp SINE Alu -14 299 1 23 0 0 0 chr12 8955558 8955581 -135326908 + AT_rich Low_complexity Low_complexity 1 23 0 461 90 104 0 chr12 8955617 8955684 -135326805 - MLT2D LTR ERVL -51 363 290 * 585 151 0 11 chr12 8955683 8955776 -135326713 - MLT1C LTR MaLR -375 92 1 26 0 0 0 chr12 8956632 8956658 -135325831 + AT_rich Low_complexity Low_complexity 1 26 0 2134 95 3 13 chr12 8956658 8956964 -135325525 + AluSq SINE Alu 1 303 -10 279 0 0 0 chr12 8956965 8956996 -135325493 + (TA)n Simple_repeat Simple_repeat 2 32 0 278 125 0 0 chr12 8957532 8957572 -135324917 + Alu SINE Alu 8 47 -256 1437 106 0 0 chr12 8957572 8957770 -135324719 + AluSg/x SINE Alu 96 293 -17 431 249 11 126 chr12 8957962 8958312 -135324177 - L1MCa LINE L1 -5057 1884 1575 1590 200 0 16 chr12 8958314 8958629 -135323860 - AluJb SINE Alu -2 310 1 2137 251 54 62 chr12 8958700 8959545 -135322944 - L1MCa LINE L1 -4892 1531 693 1178 273 65 58 chr12 8959588 8960036 -135322453 - L1MCa LINE L1 -5824 599 156 219 36 0 0 chr12 8960036 8960064 -135322425 + (TTTTG)n Simple_repeat Simple_repeat 5 32 0 2117 93 0 7 chr12 8960064 8960344 -135322145 - AluSg SINE Alu -32 278 1 1178 273 65 58 chr12 8960344 8960432 -135322057 - L1MCa LINE L1 -6266 157 58 1612 160 31 20 chr12 8960447 8960740 -135321749 - AluJo SINE Alu -11 301 6 1917 118 59 0 chr12 8960818 8961106 -135321383 - AluSq SINE Alu -3 310 6 264 268 49 0 chr12 8961153 8961235 -135321254 - L1ME LINE L1 -292 5829 5744 361 266 104 86 chr12 8961313 8961640 -135320849 + MLT1K LTR MaLR 84 416 -172 1646 146 10 30 chr12 8961831 8962023 -135320466 - AluJo SINE Alu -11 301 116 3267 149 29 91 chr12 8962023 8962294 -135320195 + LTR8 LTR ERV1 1 287 -404 2533 40 0 0 chr12 8962294 8962594 -135319895 + AluY SINE Alu 1 300 -11 3267 149 29 91 chr12 8962594 8963059 -135319430 + LTR8 LTR ERV1 287 691 0 1646 146 10 30 chr12 8963059 8963167 -135319322 - AluJo SINE Alu -196 116 7 1898 149 16 7 chr12 8963225 8963534 -135318955 + AluJb SINE Alu 1 312 0 348 312 37 17 chr12 8963568 8963773 -135318716 - L1ME LINE L1 -459 5662 5480 2080 106 0 26 chr12 8963773 8964075 -135318414 - AluSg SINE Alu -16 294 1 278 253 0 38 chr12 8964909 8964988 -135317501 + L2 LINE L2 3192 3267 -46 243 0 0 0 chr12 8966087 8966114 -135316375 + (T)n Simple_repeat Simple_repeat 1 27 0 29 0 0 0 chr12 8966195 8966224 -135316265 + AT_rich Low_complexity Low_complexity 1 29 0 5608 131 9 37 chr12 8966242 8968313 -135314176 - L1MA3 LINE L1 -27 7692 5740 1078 131 0 27 chr12 8968314 8968479 -135314010 - AluSg/x SINE Alu -16 294 133 1848 143 13 0 chr12 8968479 8968780 -135313709 - AluSx SINE Alu -4 308 4 1078 131 0 27 chr12 8968780 8968797 -135313692 - AluSg/x SINE Alu -177 133 117 1059 115 12 107 chr12 8968809 8968923 -135313566 - L1MA3 LINE L1 -4845 2720 2640 1845 125 14 0 chr12 8968923 8969204 -135313285 + AluSx SINE Alu 1 285 -27 1059 115 12 107 chr12 8969204 8969333 -135313156 - L1MA3 LINE L1 -4925 2640 2500 * 9415 146 52 3 chr12 8969316 8971109 -135311380 - L1MA3 LINE L1 -5270 2295 16 1900 128 30 3 chr12 8971245 8971541 -135310948 + AluJb SINE Alu 1 304 -8 2073 140 0 0 chr12 8971908 8972216 -135310273 - AluSx SINE Alu -4 308 1 1479 152 35 58 chr12 8972806 8973116 -135309373 - AluJb SINE Alu -9 303 1 3298 159 19 90 chr12 8973435 8973601 -135308888 - LTR8 LTR ERV1 0 691 515 2495 64 0 0 chr12 8973601 8973914 -135308575 - AluSp SINE Alu 0 313 1 3298 159 19 90 chr12 8973914 8974491 -135307998 - LTR8 LTR ERV1 -176 515 1 947 109 65 0 chr12 8974492 8974630 -135307859 - HUERS-P1 LTR ERV1 -1 6262 6116 417 145 48 0 chr12 8974630 8974713 -135307776 - LTR8A LTR ERV1 -640 87 1 1985 138 3 0 chr12 8974839 8975137 -135307352 - AluSx SINE Alu -13 299 1 1921 118 33 10 chr12 8975255 8975560 -135306929 - AluSx SINE Alu 0 312 1 2416 66 0 0 chr12 8977596 8977899 -135304590 + AluY SINE Alu 1 303 -8 2214 96 3 0 chr12 8978346 8978647 -135303842 - AluSq SINE Alu -11 302 1 1835 135 14 3 chr12 8978890 8979178 -135303311 - AluSx SINE Alu -15 297 7 2007 99 3 42 chr12 8979464 8979777 -135302712 + AluSg SINE Alu 1 301 -9 2495 51 0 10 chr12 8980495 8980808 -135301681 + AluY SINE Alu 1 310 -1 659 291 62 9 chr12 8981177 8981387 -135301102 - MIR SINE MIR -40 222 2 2070 101 10 7 chr12 8981589 8981911 -135300578 - AluSp SINE Alu 0 313 1 442 141 14 0 chr12 8981943 8982014 -135300475 + AluS SINE Alu 2 73 -240 491 216 85 80 chr12 8982413 8982502 -135299987 - MER69A DNA AcHobo -2349 177 90 2085 108 3 0 chr12 8982502 8982790 -135299699 + AluSg SINE Alu 1 289 -21 972 82 0 0 chr12 8982790 8982925 -135299564 + (GGAA)n Simple_repeat Simple_repeat 3 137 0 491 216 85 80 chr12 8982925 8983010 -135299479 - MER69A DNA AcHobo -2435 91 1 299 135 19 0 chr12 8983120 8983172 -135299317 + MADE1 DNA Mariner 28 80 0 319 293 138 27 chr12 8983884 8984072 -135298417 - MLT1H LTR MaLR -146 403 195 2532 33 0 7 chr12 8984088 8984393 -135298096 - AluY SINE Alu -8 303 1 1036 163 27 0 chr12 8985361 8985582 -135296907 - MER33 DNA MER1_type -58 266 40 2374 75 0 7 chr12 8985586 8985894 -135296595 - AluY SINE Alu -5 306 1 198 0 0 0 chr12 8986064 8986086 -135296403 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 24 0 0 0 chr12 8986136 8986160 -135296329 + AT_rich Low_complexity Low_complexity 1 24 0 865 95 0 0 chr12 8986160 8986276 -135296213 - AluSq/x SINE Alu -196 116 1 2260 49 0 11 chr12 8987440 8987768 -135294721 + AluY SINE Alu 1 325 0 1026 162 21 85 chr12 8988302 8988443 -135294046 + AluJo SINE Alu 6 128 -184 1733 124 35 0 chr12 8988443 8988702 -135293787 + AluSx SINE Alu 32 299 -13 1026 162 21 85 chr12 8988702 8988795 -135293694 + AluJo SINE Alu 128 225 -87 701 266 14 56 chr12 8988811 8989097 -135293392 - AluSp SINE Alu -16 297 24 28 0 0 0 chr12 8989108 8989136 -135293353 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr12 8989196 8989221 -135293268 + AT_rich Low_complexity Low_complexity 1 25 0 1130 141 22 5 chr12 8989442 8989626 -135292863 + AluSg/x SINE Alu 106 292 -20 22 0 0 0 chr12 8989706 8989728 -135292761 + AT_rich Low_complexity Low_complexity 1 22 0 1084 243 21 0 chr12 8989899 8990187 -135292302 - AluSc SINE Alu -5 294 1 207 100 0 0 chr12 8991079 8991109 -135291380 + (T)n Simple_repeat Simple_repeat 1 30 0 34 24 0 0 chr12 8991395 8991436 -135291053 + AT_rich Low_complexity Low_complexity 1 41 0 34 24 0 0 chr12 8991445 8991486 -135291003 + AT_rich Low_complexity Low_complexity 1 41 0 336 341 5 29 chr12 8991696 8991901 -135290588 - AluY SINE Alu 0 301 102 1092 245 48 75 chr12 8992163 8992579 -135289910 - MLT1F1 LTR MaLR 0 567 163 1031 91 0 85 chr12 8992579 8992755 -135289734 - AluSx SINE Alu -138 174 14 23 0 0 0 chr12 8992761 8992784 -135289705 + AT_rich Low_complexity Low_complexity 1 23 0 1810 86 83 43 chr12 8993377 8993678 -135288811 + AluSp SINE Alu 1 313 0 2080 106 0 0 chr12 8993738 8994022 -135288467 + AluSx SINE Alu 21 304 -8 254 286 143 0 chr12 8994776 8994874 -135287615 + L2 LINE L2 3153 3264 -8 1331 173 59 7 chr12 8995823 8996095 -135286394 + AluJb SINE Alu 1 286 -26 2042 141 0 3 chr12 8996253 8996558 -135285931 - AluSx SINE Alu -8 304 1 1907 142 3 0 chr12 8996933 8997221 -135285268 - AluJo SINE Alu -19 293 5 315 208 39 0 chr12 8998023 8998100 -135284389 + MER94 DNA DNA 4 83 -51 316 125 0 0 chr12 8998147 8998195 -135284294 - MIR SINE MIR -32 230 183 2072 118 3 0 chr12 8998210 8998515 -135283974 - AluSx SINE Alu -6 306 1 1503 168 28 28 chr12 8998515 8998806 -135283683 - AluJo SINE Alu -16 296 6 187 162 0 27 chr12 8998807 8998844 -135283645 - MIR SINE MIR -66 196 161 1589 249 46 60 chr12 8998894 8999395 -135283094 - MLT1F1 LTR MaLR 0 567 74 396 210 12 0 chr12 8999450 8999531 -135282958 + MER5A DNA MER1_type 24 105 -84 255 231 148 19 chr12 8999469 8999577 -135282912 - MER5A DNA MER1_type -31 158 37 * 206 229 104 0 chr12 8999939 8999987 -135282502 + MIR SINE MIR 204 256 -6 2272 101 0 0 chr12 9000405 9000711 -135281778 - AluSg SINE Alu -3 307 2 675 259 81 0 chr12 9001550 9001724 -135280765 + MIR SINE MIR 67 254 -8 309 328 145 0 chr12 9001836 9001967 -135280522 + L2 LINE L2 3119 3268 -4 1044 68 0 0 chr12 9002432 9002565 -135279924 - AluSp SINE Alu -180 133 1 342 231 138 23 chr12 9003678 9003808 -135278681 + MIR3 SINE MIR 1 145 -63 1895 144 0 10 chr12 9003822 9004121 -135278368 + AluJb SINE Alu 3 298 -14 1036 163 22 11 chr12 9004135 9004319 -135278170 + MER5A DNA MER1_type 4 189 0 837 204 50 64 chr12 9004402 9004660 -135277829 - MIR SINE MIR -8 254 3 709 138 110 0 chr12 9004926 9005035 -135277454 + AluSg SINE Alu 2 122 -188 1886 133 27 10 chr12 9005085 9005386 -135277103 - AluSx SINE Alu -6 306 1 392 283 6 142 chr12 9005451 9005549 -135276940 + MIR SINE MIR 12 74 -134 1641 163 16 23 chr12 9005549 9005856 -135276633 - AluJb SINE Alu -1 311 7 392 283 6 142 chr12 9005856 9005955 -135276534 + MIR SINE MIR 74 185 -23 2446 59 0 0 chr12 9006997 9007303 -135275186 - AluY SINE Alu -2 309 4 1968 116 0 0 chr12 9007303 9007579 -135274910 - AluSq SINE Alu -36 277 1 2104 114 7 0 chr12 9007714 9008020 -135274469 - AluSx SINE Alu -4 308 1 2219 70 7 17 chr12 9008624 9008924 -135273565 - AluSp SINE Alu -16 297 1 2304 102 0 0 chr12 9009750 9010055 -135272434 + AluSq SINE Alu 1 305 -8 1818 127 0 115 chr12 9010403 9010743 -135271746 + AluSx SINE Alu 2 302 0 2174 71 3 3 chr12 9010777 9011091 -135271398 + AluSp SINE Alu 1 314 0 203 352 55 23 chr12 9011092 9011220 -135271269 - L2 LINE L2 -598 2716 2585 193 357 107 0 chr12 9011330 9011442 -135271047 - L2 LINE L2 0 3313 3190 2343 54 40 0 chr12 9011555 9011851 -135270638 + AluY SINE Alu 1 308 -3 28 0 0 0 chr12 9011975 9012003 -135270486 + AT_rich Low_complexity Low_complexity 1 28 0 2124 112 3 0 chr12 9012885 9013180 -135269309 + AluSp SINE Alu 1 296 -17 193 293 0 0 chr12 9013682 9013723 -135268766 + L3 LINE CR1 1520 1560 -17 381 75 0 0 chr12 9013942 9013995 -135268494 + (TG)n Simple_repeat Simple_repeat 2 54 0 204 179 0 0 chr12 9014259 9014298 -135268191 + (TA)n Simple_repeat Simple_repeat 2 40 0 328 286 48 0 chr12 9014363 9014447 -135268042 + L1MC4 LINE L1 6614 6701 -1341 1271 205 13 20 chr12 9014907 9015205 -135267284 - MER33 DNA MER1_type -1 323 28 606 248 135 50 chr12 9015218 9015440 -135267049 + MIR SINE MIR 3 243 -19 2391 73 0 0 chr12 9015784 9016086 -135266403 - AluY SINE Alu -9 302 1 253 339 43 9 chr12 9016214 9016329 -135266160 - MIR SINE MIR -56 152 34 440 314 158 11 chr12 9016535 9016997 -135265492 - L1M4 LINE L1 -3104 3042 2513 898 120 0 0 chr12 9017007 9017132 -135265357 - AluSq/x SINE Alu -188 125 1 374 333 56 0 chr12 9017132 9017276 -135265213 - L1M4 LINE L1 -3605 2541 2390 2271 95 0 0 chr12 9017417 9017722 -135264767 + AluY SINE Alu 1 305 -6 1644 177 46 33 chr12 9017799 9018019 -135264470 - Charlie1b DNA MER1_type -2238 523 294 2168 118 0 13 chr12 9018019 9018333 -135264156 + AluSg SINE Alu 1 310 0 1644 177 46 33 chr12 9018333 9018501 -135263988 - Charlie1b DNA MER1_type -2467 294 130 592 213 32 58 chr12 9018537 9018692 -135263797 - Charlie1b DNA MER1_type -371 152 2 849 162 0 0 chr12 9018762 9018898 -135263591 - AluSg/x SINE Alu -15 295 160 825 224 51 90 chr12 9018952 9019287 -135263202 - L2 LINE L2 -4 3309 2988 21 0 0 0 chr12 9019518 9019539 -135262950 + AT_rich Low_complexity Low_complexity 1 21 0 2240 85 0 0 chr12 9019539 9019834 -135262655 - AluSx SINE Alu -16 296 2 1777 118 46 14 chr12 9020617 9020897 -135261592 - AluSx SINE Alu -23 289 1 2056 125 0 22 chr12 9020939 9021258 -135261231 - AluSx SINE Alu 0 312 1 1895 136 3 0 chr12 9021911 9022205 -135260284 + AluSx SINE Alu 1 295 -17 5902 118 11 14 chr12 9022835 9023540 -135258949 + L1PA16 LINE L1 5119 5824 -342 1947 117 3 3 chr12 9023540 9023845 -135258644 + AluSq SINE Alu 1 305 0 5902 118 11 14 chr12 9023845 9024166 -135258323 + L1PA16 LINE L1 5824 6144 -22 1766 158 3 0 chr12 9024201 9024513 -135257976 + AluSx SINE Alu 1 313 0 1974 129 3 0 chr12 9024730 9025025 -135257464 + AluSx SINE Alu 2 297 -15 367 316 62 23 chr12 9025406 9025583 -135256906 - L2 LINE L2 -11 3302 3119 1984 123 7 17 chr12 9025601 9025893 -135256596 + AluSx SINE Alu 1 289 -23 336 364 0 0 chr12 9026028 9026149 -135256340 - L2 LINE L2 -600 2714 2594 307 258 0 0 chr12 9026230 9026296 -135256193 - MER92C LTR ERV1 -2 552 487 455 201 29 148 chr12 9026362 9026571 -135255918 - MER92C LTR ERV1 -370 184 1 571 261 134 90 chr12 9026652 9027165 -135255324 - MER34 LTR ERV1 -6 536 1 2627 53 0 0 chr12 9027249 9027549 -135254940 + AluY SINE Alu 1 300 -11 793 140 0 59 chr12 9028199 9028335 -135254154 + FLAM_C SINE Alu 1 128 -5 207 233 0 0 chr12 9028339 9028382 -135254107 + L2 LINE L2 2710 2752 -562 181 324 84 67 chr12 9028548 9028786 -135253703 + L2 LINE L2 2942 3183 -89 355 259 39 18 chr12 9028815 9028966 -135253523 + MLT1J1 LTR MaLR 24 141 -305 2388 103 3 0 chr12 9028986 9029296 -135253193 - AluSq SINE Alu -2 311 1 2251 114 0 7 chr12 9029298 9029605 -135252884 - AluSx SINE Alu -7 305 1 378 170 93 30 chr12 9029605 9029786 -135252703 - L1M3 LINE L1 -686 5485 5283 3991 84 0 18 chr12 9029786 9030047 -135252442 - L1PA14 LINE L1 -1 6160 5896 1539 112 0 66 chr12 9030047 9030289 -135252200 - AluSg/x SINE Alu -3 309 84 3991 84 0 18 chr12 9030289 9030575 -135251914 - L1PA14 LINE L1 -265 5896 5623 378 170 93 30 chr12 9030575 9030602 -135251887 - L1M3 LINE L1 -888 5283 5259 424 252 10 0 chr12 9030659 9030762 -135251727 - L1M3 LINE L1 -915 5231 5128 510 184 0 0 chr12 9030785 9030872 -135251617 + AluJ/FLAM SINE Alu 3 89 -223 1525 271 117 22 chr12 9030905 9030961 -135251528 - L1M3 LINE L1 -1053 5093 5044 1807 146 0 47 chr12 9030961 9031283 -135251206 - AluJb SINE Alu -5 307 1 1525 271 117 22 chr12 9031283 9031530 -135250959 - L1M3 LINE L1 -1102 5044 4822 315 0 0 0 chr12 9031530 9031565 -135250924 + (CA)n Simple_repeat Simple_repeat 1 35 0 1525 271 117 22 chr12 9031565 9032078 -135250411 - L1M3 LINE L1 -1324 4822 4198 744 134 97 143 chr12 9032208 9032381 -135250108 - MLT1B LTR MaLR -183 207 43 1518 132 45 66 chr12 9032381 9032701 -135249788 + AluJo SINE Alu 1 314 0 744 134 97 143 chr12 9032701 9032743 -135249746 - MLT1B LTR MaLR -347 43 1 650 227 89 65 chr12 9032808 9033215 -135249274 + LTR30 LTR ERV1 127 595 0 31 0 0 0 chr12 9033329 9033360 -135249129 + AT_rich Low_complexity Low_complexity 1 31 0 1971 148 14 0 chr12 9033397 9033688 -135248801 - AluJb SINE Alu -17 295 1 1505 199 87 84 chr12 9033692 9033926 -135248563 - Charlie2 DNA MER1_type -327 2535 2303 2190 119 3 0 chr12 9033926 9034219 -135248270 - AluSx SINE Alu -18 294 1 1505 199 87 84 chr12 9034219 9034347 -135248142 - Charlie2 DNA MER1_type -559 2303 2177 2179 103 34 0 chr12 9034347 9034638 -135247851 - AluSx SINE Alu -11 301 1 1505 199 87 84 chr12 9034638 9034918 -135247571 - Charlie2 DNA MER1_type -685 2177 1890 333 246 254 31 chr12 9034949 9034984 -135247505 - Charlie2 DNA MER1_type -2464 318 292 219 69 0 0 chr12 9034984 9035013 -135247476 + (TG)n Simple_repeat Simple_repeat 1 29 0 333 246 254 31 chr12 9035013 9035237 -135247252 - Charlie2 DNA MER1_type -2490 292 1 632 253 69 0 chr12 9035249 9035423 -135247066 + MIR SINE MIR 32 217 -45 599 174 60 7 chr12 9035453 9035602 -135246887 + L1MA10 LINE L1 6174 6330 -4 2235 112 20 3 chr12 9035603 9035907 -135246582 + AluSx SINE Alu 3 311 -1 602 206 7 29 chr12 9035932 9036068 -135246421 - AluJb SINE Alu -178 134 2 863 194 123 144 chr12 9036450 9036825 -135245664 - MER110A LTR ERV1 -5 463 82 1438 85 0 5 chr12 9036825 9037025 -135245464 + L1PB1 LINE L1 5951 6149 -2 863 194 123 144 chr12 9037025 9037041 -135245448 - MER110A LTR ERV1 -386 82 67 1501 100 63 48 chr12 9037041 9037179 -135245310 - L1MA2 LINE L1 -7 6297 6163 2125 120 0 3 chr12 9037179 9037471 -135245018 + AluSx SINE Alu 1 291 -21 1501 100 63 48 chr12 9037471 9037601 -135244888 - L1MA2 LINE L1 -141 6163 6025 863 194 123 144 chr12 9037601 9037728 -135244761 - MER110A LTR ERV1 -401 67 1 2282 108 0 7 chr12 9037800 9038107 -135244382 - AluSx SINE Alu -7 305 1 202 346 81 58 chr12 9038523 9038783 -135243706 - L2 LINE L2 -69 3203 2938 2404 55 41 0 chr12 9038872 9039164 -135243325 - AluY SINE Alu -7 304 1 260 283 22 22 chr12 9039396 9039488 -135243001 - MIR3 SINE MIR -5 203 112 32 0 0 0 chr12 9039503 9039535 -135242954 + AT_rich Low_complexity Low_complexity 1 32 0 2136 82 7 34 chr12 9039536 9039849 -135242640 - AluSq SINE Alu 0 305 1 268 136 0 0 chr12 9039849 9039893 -135242596 + Charlie2 DNA MER1_type 2758 2801 -61 23 0 0 0 chr12 9039924 9039947 -135242542 + AT_rich Low_complexity Low_complexity 1 23 0 769 239 226 56 chr12 9040472 9041041 -135241448 - L1ME3A LINE L1 -208 5962 5270 2246 117 16 0 chr12 9041041 9041348 -135241141 - AluSx SINE Alu 0 312 1 769 239 226 56 chr12 9041348 9041433 -135241056 - L1ME3A LINE L1 -900 5270 5201 842 205 0 0 chr12 9041446 9041612 -135240877 - L1M3 LINE L1 -598 5582 5417 271 323 92 5 chr12 9041609 9041790 -135240699 - L1ME3A LINE L1 -933 5213 5012 * 1969 137 0 14 chr12 9041790 9042075 -135240414 - AluSx SINE Alu -31 281 1 271 323 92 5 chr12 9042075 9042088 -135240401 - L1ME3A LINE L1 -1134 5012 5002 615 122 112 0 chr12 9042599 9042697 -135239792 - AluSq/x SINE Alu -202 110 2 805 196 89 124 chr12 9042704 9043163 -135239326 - MER34B LTR ERV1 -102 440 12 621 124 0 0 chr12 9043270 9043359 -135239130 - LTR8 LTR ERV1 -545 146 58 1804 119 54 11 chr12 9043364 9043641 -135238848 + AluJb SINE Alu 9 297 -15 1865 125 3 28 chr12 9043728 9044017 -135238472 + AluSx SINE Alu 1 282 -30 2204 105 3 7 chr12 9044017 9044312 -135238177 + AluSc SINE Alu 2 295 -14 1092 227 133 0 chr12 9044358 9044658 -135237831 + L2 LINE L2 2437 2776 -538 2609 160 88 25 chr12 9044658 9045274 -135237215 - MER39 LTR ERV1 0 707 1 762 300 119 50 chr12 9045347 9045396 -135237093 + L2 LINE L2 2819 2863 -450 2609 92 3 8 chr12 9045396 9045753 -135236736 - THE1A LTR MaLR 0 355 1 11685 84 16 24 chr12 9045753 9045847 -135236642 - THE1A-int LTR MaLR 0 1580 1487 2499 64 3 0 chr12 9045847 9046144 -135236345 - AluSp SINE Alu -15 298 1 11685 84 16 24 chr12 9046144 9046789 -135235700 - THE1A-int LTR MaLR -93 1487 838 2401 94 0 0 chr12 9046789 9047088 -135235401 - AluSg SINE Alu -11 299 1 11685 84 16 24 chr12 9047088 9047729 -135234760 - THE1A-int LTR MaLR -742 838 211 2446 82 7 0 chr12 9047729 9048034 -135234455 - AluSp SINE Alu -6 307 1 11685 84 16 24 chr12 9048034 9048244 -135234245 - THE1A-int LTR MaLR -1369 211 1 2584 81 5 48 chr12 9048244 9048545 -135233944 - THE1A LTR MaLR 0 355 71 2009 98 33 65 chr12 9048545 9048851 -135233638 - AluSq SINE Alu -17 296 1 2584 81 5 48 chr12 9048851 9048920 -135233569 - THE1A LTR MaLR -284 71 1 762 300 119 50 chr12 9048920 9049331 -135233158 + L2 LINE L2 2862 3313 0 461 246 66 0 chr12 9049332 9049454 -135233035 - L2 LINE L2 -810 2504 2375 1102 195 35 23 chr12 9049745 9050002 -135232487 + LTR37B LTR ERV1 209 468 0 1187 216 36 73 chr12 9050182 9050539 -135231950 + MER34 LTR ERV1 1 344 -198 988 152 46 78 chr12 9050552 9050682 -135231807 + MER2 DNA MER2_type 1 123 -222 1829 162 27 0 chr12 9050682 9050979 -135231510 - AluSx SINE Alu -7 305 1 988 152 46 78 chr12 9050979 9051065 -135231424 + MER2 DNA MER2_type 123 210 -135 754 81 0 118 chr12 9051088 9051224 -135231265 - AluSp/q SINE Alu 0 313 194 365 133 33 0 chr12 9051235 9051295 -135231194 - AluSx SINE Alu -3 299 238 4226 145 34 24 chr12 9051307 9051882 -135230607 - MER51B-int LTR ERV1 -6357 1459 891 2101 136 0 7 chr12 9051882 9052183 -135230306 - AluSx SINE Alu -13 299 1 4226 145 34 24 chr12 9052183 9052969 -135229520 - MER51B-int LTR ERV1 -6925 891 1 2024 114 135 3 chr12 9052969 9053302 -135229187 - MER51B LTR ERV1 0 377 1 1721 131 17 0 chr12 9053302 9053539 -135228950 - AluSx SINE Alu -71 241 1 338 169 34 34 chr12 9053539 9053628 -135228861 + MER34 LTR ERV1 380 468 -74 2177 99 3 0 chr12 9053651 9053934 -135228555 - AluSg SINE Alu -26 284 1 2155 111 17 0 chr12 9053936 9054233 -135228256 - AluSx SINE Alu -10 302 1 284 152 242 30 chr12 9054247 9054313 -135228176 - AluSg/x SINE Alu -62 238 159 300 182 61 0 chr12 9054320 9054386 -135228103 + MER34 LTR ERV1 473 542 0 530 129 0 138 chr12 9054394 9054510 -135227979 - MLT1D LTR MaLR 0 626 527 2360 82 3 7 chr12 9054517 9054823 -135227666 + AluSp SINE Alu 9 313 0 401 176 0 0 chr12 9054838 9054906 -135227583 + AluS SINE Alu 2 69 -244 1121 66 0 0 chr12 9054906 9055043 -135227446 + AluSg/x SINE Alu 171 307 -3 1241 128 0 60 chr12 9055046 9055264 -135227225 + AluSg/x SINE Alu 103 307 -3 1504 193 57 71 chr12 9055291 9055711 -135226778 - MLT1D LTR MaLR -91 414 1 466 297 70 16 chr12 9055973 9056158 -135226331 + MIR SINE MIR 14 208 -54 202 306 153 8 chr12 9056546 9056670 -135225819 - MIR SINE MIR -27 235 94 329 224 47 47 chr12 9059050 9059157 -135223332 + L2 LINE L2 3200 3306 -7 229 240 13 53 chr12 9059490 9059565 -135222924 + CT-rich Low_complexity Low_complexity 1 72 0 200 308 0 0 chr12 9059803 9059855 -135222634 + GA-rich Low_complexity Low_complexity 1 52 0 222 254 0 0 chr12 9059932 9059987 -135222502 + G-rich Low_complexity Low_complexity 1 55 0 37 86 0 0 chr12 9060119 9060212 -135222277 + GC_rich Low_complexity Low_complexity 1 93 0 180 259 136 12 chr12 9062303 9062384 -135220105 - MIR SINE MIR -62 146 56 248 324 49 10 chr12 9062416 9062518 -135219971 + MIR SINE MIR 64 169 -93 249 243 14 14 chr12 9063387 9063461 -135219028 + MIR3 SINE MIR 120 193 -15 896 178 59 0 chr12 9063997 9064166 -135218323 - AluJo SINE Alu -12 300 122 783 252 0 0 chr12 9064315 9064466 -135218023 - Tigger3(Golem) DNA MER2_type 0 3029 2879 260 283 0 0 chr12 9064467 9064527 -135217962 - Tigger3(Golem) DNA MER2_type -2969 60 1 2294 89 0 3 chr12 9064589 9064880 -135217609 - AluSq SINE Alu -23 290 1 1338 166 21 33 chr12 9064880 9065121 -135217368 + AluJo SINE Alu 53 290 -22 1005 181 101 8 chr12 9065596 9065894 -135216595 + MER33 DNA MER1_type 1 324 0 2241 107 0 0 chr12 9065945 9066235 -135216254 + AluSx SINE Alu 1 290 -22 2359 90 0 0 chr12 9067343 9067633 -135214856 - AluSx SINE Alu -22 290 1 236 280 21 11 chr12 9068054 9068147 -135214342 + CT-rich Low_complexity Low_complexity 2 95 0 1010 237 76 58 chr12 9069003 9069066 -135213423 - MER2 DNA MER2_type -10 335 275 2542 62 0 7 chr12 9069066 9069371 -135213118 + AluY SINE Alu 1 303 -8 1010 237 76 58 chr12 9069371 9069636 -135212853 - MER2 DNA MER2_type -70 275 1 2231 118 3 0 chr12 9069714 9070010 -135212479 + AluSx SINE Alu 1 297 -15 619 244 115 10 chr12 9070608 9070817 -135211672 + MIR SINE MIR 13 243 -19 446 291 149 73 chr12 9070867 9071854 -135210635 - L2 LINE L2 -80 3192 2282 2081 119 3 14 chr12 9071854 9072148 -135210341 + AluSx SINE Alu 1 291 -21 2263 87 3 17 chr12 9072148 9072446 -135210043 + AluSq SINE Alu 1 294 -19 446 291 149 73 chr12 9072446 9073265 -135209224 - L2 LINE L2 -989 2283 1243 1786 133 22 7 chr12 9073373 9073726 -135208763 - AluSx SINE Alu 0 357 1 472 210 132 30 chr12 9074115 9074282 -135208207 - L1MC5 LINE L1 -36 7925 7742 892 290 74 14 chr12 9074306 9074671 -135207818 - L1ME3A LINE L1 -256 5914 5528 309 282 29 29 chr12 9074757 9074860 -135207629 - L2 LINE L2 -17 3296 3194 31 82 0 0 chr12 9074975 9075048 -135207441 + AT_rich Low_complexity Low_complexity 1 73 0 1772 156 38 7 chr12 9075051 9075339 -135207150 - AluJb SINE Alu -15 297 1 403 300 162 73 chr12 9075351 9075678 -135206811 + L2 LINE L2 2917 3272 0 183 220 0 0 chr12 9076495 9076545 -135205944 + T-rich Low_complexity Low_complexity 1 50 0 230 248 158 20 chr12 9076734 9076835 -135205654 - L2 LINE L2 -4 3309 3195 1985 123 4 0 chr12 9076938 9077215 -135205274 + AluSx SINE Alu 1 278 -34 262 364 68 0 chr12 9077626 9077744 -135204745 - L2 LINE L2 -5 3267 3142 342 98 0 0 chr12 9078248 9078299 -135204190 + (CAG)n Simple_repeat Simple_repeat 3 53 0 260 229 0 0 chr12 9080303 9080351 -135202138 - MIR SINE MIR -137 71 24 2156 113 0 3 chr12 9080863 9081154 -135201335 + AluSx SINE Alu 1 290 -22 2408 61 0 10 chr12 9081288 9081583 -135200906 - AluSp SINE Alu -21 292 1 1820 167 7 3 chr12 9081618 9081906 -135200583 + AluJb SINE Alu 1 289 -23 916 132 0 29 chr12 9083965 9084101 -135198388 - FLAM_C SINE Alu -1 132 1 1820 178 0 3 chr12 9084341 9084645 -135197844 - AluJb SINE Alu -9 303 1 23 33 0 0 chr12 9085767 9085797 -135196692 + AT_rich Low_complexity Low_complexity 1 30 0 483 192 77 0 chr12 9087784 9087888 -135194601 - MER81 DNA DNA 0 114 3 2177 104 7 0 chr12 9088471 9088758 -135193731 - AluSq SINE Alu -11 302 14 241 291 155 0 chr12 9089943 9090046 -135192443 - MIR SINE MIR -60 148 30 2185 102 3 3 chr12 9090398 9090691 -135191798 + AluSc SINE Alu 1 293 -16 518 205 34 26 chr12 9093115 9093232 -135189257 - MIR SINE MIR -32 230 113 325 260 52 58 chr12 9093795 9093949 -135188540 - MIR SINE MIR -39 223 71 787 226 85 9 chr12 9096251 9096463 -135186026 - MIR SINE MIR -33 229 2 26 0 0 0 chr12 9096551 9096577 -135185912 + AT_rich Low_complexity Low_complexity 1 26 0 1743 154 15 0 chr12 9096721 9096993 -135185496 + AluJo SINE Alu 12 287 -25 268 200 30 110 chr12 9097144 9097244 -135185245 - L2 LINE L2 -8 3305 3214 1277 150 0 0 chr12 9097824 9098011 -135184478 - AluJb SINE Alu -125 187 1 597 237 139 40 chr12 9098074 9098423 -135184066 - L1MC4 LINE L1 0 8042 7631 493 178 14 82 chr12 9098426 9098511 -135183978 - L1MC4 LINE L1 -460 7582 7510 2742 185 58 45 chr12 9098511 9099137 -135183352 - LTR27 LTR ERV1 0 636 3 493 178 14 82 chr12 9099137 9099197 -135183292 - L1MC4 LINE L1 -532 7510 7447 376 280 60 24 chr12 9099204 9099372 -135183117 - LTR41 LTR ERVL -1 772 599 529 216 9 0 chr12 9099536 9099647 -135182842 - L1MC4 LINE L1 -1068 6974 6863 1878 183 81 15 chr12 9099652 9100062 -135182427 + L1MA9 LINE L1 5843 6279 -33 803 251 54 4 chr12 9100067 9100386 -135182103 - L1MC4a LINE L1 -1024 6784 6358 2304 94 7 0 chr12 9100435 9100732 -135181757 - AluSg SINE Alu -11 299 1 710 198 29 122 chr12 9100732 9100902 -135181587 - L1ME2 LINE L1 -33 6131 5988 1712 191 16 7 chr12 9100902 9101211 -135181278 - AluJb SINE Alu 0 312 1 710 198 29 122 chr12 9101211 9101278 -135181211 - L1ME2 LINE L1 -176 5988 5916 1324 231 169 105 chr12 9101296 9101962 -135180527 + MER52A LTR ERV1 669 1425 -330 2055 138 0 7 chr12 9101962 9102266 -135180223 - AluSx SINE Alu -10 302 1 1324 231 169 105 chr12 9102266 9102620 -135179869 + MER52A LTR ERV1 1425 1755 0 246 224 109 61 chr12 9102620 9102738 -135179751 - L1ME2 LINE L1 -252 5910 5780 3905 165 43 63 chr12 9102738 9103483 -135179006 - MER44D DNA MER2_type 0 605 4 246 224 109 61 chr12 9103483 9103529 -135178960 - L1ME2 LINE L1 -382 5780 5738 813 183 8 0 chr12 9103584 9103715 -135178774 - AluJo SINE Alu -178 134 3 1519 216 65 34 chr12 9103715 9104094 -135178395 - L1ME2 LINE L1 -1140 5006 4608 1940 148 7 7 chr12 9104094 9104391 -135178098 + AluJb SINE Alu 1 297 -15 1519 216 65 34 chr12 9104391 9104484 -135178005 - L1ME2 LINE L1 -1538 4608 4519 1141 239 139 109 chr12 9104484 9105190 -135177299 + LTR8A LTR ERV1 1 727 0 779 259 68 3 chr12 9105190 9105484 -135177005 - L1ME2 LINE L1 -1624 4522 4210 1331 279 10 25 chr12 9105503 9105908 -135176581 + L1MEc LINE L1 35 433 -5963 568 274 24 12 chr12 9105911 9106075 -135176414 + L1MEc LINE L1 475 640 -5756 1166 244 8 18 chr12 9106119 9106400 -135176089 + LTR40a LTR ERVL 17 230 -232 365 247 62 0 chr12 9106511 9106608 -135175881 - MIR SINE MIR -70 192 90 1131 282 4 0 chr12 9106608 9106856 -135175633 + LTR40a LTR ERVL 271 519 0 1854 260 72 63 chr12 9106856 9106923 -135175566 + L1MEc LINE L1 673 738 -5658 207 0 0 0 chr12 9106923 9106946 -135175543 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2023 115 11 28 chr12 9106949 9107236 -135175253 - AluSq SINE Alu -30 283 2 1854 260 72 63 chr12 9107236 9107323 -135175166 + L1MEc LINE L1 739 824 -5572 1663 195 0 0 chr12 9107323 9107605 -135174884 + AluJo SINE Alu 1 282 -30 1854 260 72 63 chr12 9107605 9107951 -135174538 + L1MEc LINE L1 824 1165 -5231 2099 136 0 13 chr12 9107951 9108267 -135174222 + AluJb SINE Alu 1 312 0 1854 260 72 63 chr12 9108267 9108872 -135173617 + L1MEc LINE L1 1165 1794 -4602 * 13940 32 0 1 chr12 9108869 9110527 -135171962 - L1P LINE L1 -2310 3836 2180 13759 26 5 0 chr12 9110503 9112845 -135169644 + L1PA4 LINE L1 3782 6132 -23 * 189 0 0 0 chr12 9112865 9112886 -135169603 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 2418 218 104 57 chr12 9112886 9112959 -135169530 + L1MEc LINE L1 1793 1861 -4354 1608 153 20 43 chr12 9112959 9113259 -135169230 + AluJo SINE Alu 1 293 -19 2418 218 104 57 chr12 9113259 9114495 -135167994 + L1MEc LINE L1 1861 3086 -3129 1163 251 125 25 chr12 9115052 9115351 -135167138 + L1MEc LINE L1 3095 3363 -2852 1866 157 0 7 chr12 9115351 9115664 -135166825 + AluJb SINE Alu 1 311 0 1163 251 125 25 chr12 9115664 9115675 -135166814 + L1MEc LINE L1 3363 3371 -2844 1033 241 32 0 chr12 9115675 9115891 -135166598 + MER58A DNA MER1_type 2 224 0 1163 251 125 25 chr12 9115891 9116057 -135166432 + L1MEc LINE L1 3371 3621 -2594 2043 247 87 27 chr12 9116104 9116991 -135165498 - L1M4 LINE L1 -1947 4199 3260 2074 77 37 53 chr12 9117001 9117300 -135165189 - AluSx SINE Alu -8 304 11 554 159 11 0 chr12 9117301 9117389 -135165100 + FLAM_A SINE Alu 40 128 -14 12530 203 31 36 chr12 9117399 9117682 -135164807 - L1M2 LINE L1 -867 5343 5060 2470 57 0 7 chr12 9117682 9117978 -135164511 - AluY SINE Alu -17 294 1 12530 203 31 36 chr12 9117978 9118378 -135164111 - L1M2 LINE L1 -1150 5060 4660 2301 94 0 55 chr12 9118378 9118708 -135163781 + AluSx SINE Alu 1 312 0 12530 203 31 36 chr12 9118708 9118766 -135163723 - L1M2 LINE L1 -1550 4660 4603 1227 135 89 163 chr12 9118766 9119159 -135163330 + MLT1A1 LTR MaLR 2 365 0 12530 203 31 36 chr12 9119159 9119665 -135162824 - L1M2 LINE L1 -1607 4603 4096 2476 46 0 0 chr12 9119665 9119986 -135162503 - AluY SINE Alu 0 321 1 12530 203 31 36 chr12 9119986 9120406 -135162083 - L1M2 LINE L1 -2114 4096 3675 2125 115 0 14 chr12 9120406 9120719 -135161770 - AluSx SINE Alu 0 309 1 12530 203 31 36 chr12 9120719 9121071 -135161418 - L1M2 LINE L1 -2535 3675 3323 1832 168 13 7 chr12 9121071 9121381 -135161108 - AluJb SINE Alu 0 312 1 12530 203 31 36 chr12 9121381 9122272 -135160217 - L1M2 LINE L1 -2887 3323 2429 2040 126 0 17 chr12 9122272 9122566 -135159923 - AluSq SINE Alu -20 293 5 12530 203 31 36 chr12 9122566 9122727 -135159762 - L1M2 LINE L1 -3781 2429 2269 2255 82 0 36 chr12 9122727 9123033 -135159456 - AluY SINE Alu -16 295 1 12530 203 31 36 chr12 9123033 9123242 -135159247 - L1M2 LINE L1 -3941 2269 2060 1204 127 0 0 chr12 9123389 9123555 -135158934 - AluSg/x SINE Alu -23 289 124 638 231 57 45 chr12 9123603 9123850 -135158639 - L1 LINE L1 -4411 3154 2905 602 219 106 8 chr12 9123871 9123994 -135158495 - AluJo SINE Alu -176 136 2 594 180 78 0 chr12 9123997 9124125 -135158364 - L1M2 LINE L1 -4327 3239 3102 734 51 17 25 chr12 9124137 9124255 -135158234 + (TTTC)n Simple_repeat Simple_repeat 2 118 0 1848 163 0 0 chr12 9124257 9124534 -135157955 - AluSx SINE Alu -35 277 1 2058 137 3 10 chr12 9124538 9124837 -135157652 - AluSx SINE Alu -15 297 1 2567 201 42 29 chr12 9124839 9125414 -135157075 - L1M2 LINE L1 -4327 3239 2632 2117 108 3 56 chr12 9125414 9125738 -135156751 - AluSq SINE Alu -6 307 1 2567 201 42 29 chr12 9125738 9126038 -135156451 - L1M2 LINE L1 -4934 2632 2337 574 303 50 24 chr12 9126213 9126676 -135155813 - L1M2 LINE L1 -5292 2274 1365 1409 250 93 35 chr12 9126682 9127550 -135154939 - L1ME LINE L1 -2887 3328 2395 1589 215 83 59 chr12 9127550 9128043 -135154446 + MLT1D LTR MaLR 1 505 0 1409 250 93 35 chr12 9128043 9128151 -135154338 - L1ME LINE L1 -3820 2395 2295 2328 113 0 0 chr12 9128164 9128465 -135154024 - AluSq SINE Alu -12 301 1 255 256 65 36 chr12 9128470 9128638 -135153851 - L1ME LINE L1 -4056 2340 2168 * 1043 297 37 36 chr12 9128632 9128915 -135153574 - L1ME LINE L1 -4541 1855 1574 2330 105 0 0 chr12 9128915 9129220 -135153269 - AluSq SINE Alu -8 305 1 1043 297 37 36 chr12 9129220 9129720 -135152769 - L1ME LINE L1 -4822 1574 1071 1462 121 0 5 chr12 9129738 9129937 -135152552 - AluSg/x SINE Alu -28 282 85 941 122 8 0 chr12 9129941 9130072 -135152417 - AluSq/x SINE Alu -180 132 1 381 266 41 18 chr12 9130106 9130413 -135152076 - L1ME LINE L1 -5199 1006 696 * 1583 199 68 10 chr12 9130403 9130800 -135151689 - L1MD3 LINE L1 0 7995 7576 2830 181 29 26 chr12 9130808 9131355 -135151134 - MER21A LTR ERV1 -6 925 377 1188 147 69 17 chr12 9131400 9131632 -135150857 - MER21A LTR ERV1 -686 245 2 746 183 17 39 chr12 9131633 9131813 -135150676 - L1MD3 LINE L1 -416 7579 7404 312 267 11 0 chr12 9131815 9131905 -135150584 - MLT1F1 LTR MaLR -442 125 35 1164 163 125 29 chr12 9131905 9132218 -135150271 - L1MD3 LINE L1 -879 7116 6774 2531 111 67 7 chr12 9132229 9132633 -135149856 + MSTA LTR MaLR 1 428 0 1643 169 36 22 chr12 9132654 9132697 -135149792 - L1MB2 LINE L1 -42 6129 6088 1369 218 48 61 chr12 9132697 9133092 -135149397 + MLT1B LTR MaLR 1 390 0 1643 169 36 22 chr12 9133092 9133404 -135149085 - L1MB2 LINE L1 -83 6088 5769 502 307 120 7 chr12 9133675 9133975 -135148514 - L1ME LINE L1 -6041 355 22 188 293 27 0 chr12 9134003 9134078 -135148411 + L2 LINE L2 2137 2213 -1101 2190 90 3 20 chr12 9134101 9134401 -135148088 - AluSq SINE Alu -18 295 1 22 0 0 0 chr12 9136920 9136942 -135145547 + AT_rich Low_complexity Low_complexity 1 22 0 950 276 70 6 chr12 9137110 9137469 -135145020 - L1MC4a LINE L1 -1904 5904 5523 1440 125 20 162 chr12 9138006 9138357 -135144132 - AluJb SINE Alu -1 301 1 180 0 0 0 chr12 9138601 9138621 -135143868 + (T)n Simple_repeat Simple_repeat 1 20 0 2182 97 0 29 chr12 9138798 9139107 -135143382 - AluSg SINE Alu -10 300 1 2065 123 3 7 chr12 9139593 9139885 -135142604 - AluSx SINE Alu -21 291 1 221 0 35 0 chr12 9140836 9140865 -135141624 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 259 197 40 26 chr12 9140940 9141016 -135141473 + CT-rich Low_complexity Low_complexity 5 81 0 2190 96 7 7 chr12 9141203 9141496 -135140993 - AluSc SINE Alu -11 298 6 1258 113 11 0 chr12 9143303 9143480 -135139009 - AluSq SINE Alu -10 303 125 207 241 106 128 chr12 9143487 9143565 -135138924 - MIR SINE MIR -75 187 112 1996 153 0 3 chr12 9143565 9143859 -135138630 + AluSx SINE Alu 1 293 -19 207 241 106 128 chr12 9143859 9143921 -135138568 - MIR SINE MIR -150 112 50 2032 136 3 3 chr12 9143930 9144225 -135138264 + AluJb SINE Alu 5 299 -13 766 96 29 0 chr12 9144416 9144520 -135137969 - FLAM_C SINE Alu -16 127 21 363 247 0 0 chr12 9145186 9145263 -135137226 + MIR SINE MIR 73 149 -113 2109 117 13 10 chr12 9145278 9145577 -135136912 + AluSx SINE Alu 3 302 -10 1344 161 52 2 chr12 9145918 9146352 -135136137 - L1MB3 LINE L1 -7 6176 5686 2833 167 21 2 chr12 9146860 9147346 -135135143 + LTR42 LTR ERVL 1 495 0 36 23 0 0 chr12 9147496 9147539 -135134950 + AT_rich Low_complexity Low_complexity 1 43 0 234 0 0 0 chr12 9148089 9148115 -135134374 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1749 173 0 0 chr12 9148120 9148386 -135134103 - AluJb SINE Alu -46 266 1 315 0 0 0 chr12 9148430 9148465 -135134024 + (CA)n Simple_repeat Simple_repeat 2 36 0 188 206 76 130 chr12 9148652 9148783 -135133706 + MIR SINE MIR 24 147 -61 320 141 12 24 chr12 9148875 9148960 -135133529 + Zaphod DNA AcHobo 907 990 -3041 5977 25 0 0 chr12 9149223 9149914 -135132575 - L1PA3 LINE L1 -1 6154 5464 1526 180 3 44 chr12 9150006 9150300 -135132189 - AluJo SINE Alu -30 282 1 28 95 0 0 chr12 9150368 9150452 -135132037 + AT_rich Low_complexity Low_complexity 1 84 0 2950 137 36 46 chr12 9150475 9150612 -135131877 + L1MA5 LINE L1 5640 5777 -523 2157 55 4 0 chr12 9150612 9150881 -135131608 + L1PA7 LINE L1 5878 6150 -4 2950 137 36 46 chr12 9150881 9151184 -135131305 + L1MA5 LINE L1 5777 6075 -225 2064 138 3 37 chr12 9151184 9151533 -135130956 - MER1B DNA MER1_type 0 337 1 2950 137 36 46 chr12 9151533 9151695 -135130794 + L1MA5 LINE L1 6075 6237 -63 910 277 127 4 chr12 9151702 9152115 -135130374 - L2 LINE L2 -110 3203 2727 267 279 23 23 chr12 9152177 9152263 -135130226 + MIR SINE MIR 90 175 -87 275 330 144 0 chr12 9152265 9152430 -135130059 - MIR3 SINE MIR -15 193 1 1913 147 0 32 chr12 9152777 9153090 -135129399 - AluSx SINE Alu -9 303 1 183 188 0 0 chr12 9153431 9153479 -135129010 + T-rich Low_complexity Low_complexity 3 50 0 1341 208 84 23 chr12 9153999 9154346 -135128143 - MLT1A2 LTR MaLR 0 374 7 251 267 9 48 chr12 9154607 9154777 -135127712 + GA-rich Low_complexity Low_complexity 1 163 0 1112 146 0 0 chr12 9155563 9155721 -135126768 + FRAM SINE Alu 5 162 -4 248 318 182 0 chr12 9156169 9156257 -135126232 + L2 LINE L2 3169 3272 0 19195 172 59 40 chr12 9157075 9158996 -135123493 + L1MA3 LINE L1 12 1896 -5828 2249 120 29 56 chr12 9158996 9159370 -135123119 - THE1B LTR MaLR 0 364 1 19195 172 59 40 chr12 9159370 9162136 -135120353 + L1MA3 LINE L1 1896 4609 -3115 2032 145 0 3 chr12 9162136 9162433 -135120056 - AluSx SINE Alu -16 296 1 19195 172 59 40 chr12 9162433 9162543 -135119946 + L1MA3 LINE L1 4609 4715 -3009 2102 96 7 0 chr12 9162543 9162814 -135119675 + AluSq SINE Alu 41 313 0 19195 172 59 40 chr12 9162814 9164115 -135118374 + L1MA3 LINE L1 4715 6365 -1359 661 119 9 28 chr12 9164115 9164224 -135118265 + FLAM_C SINE Alu 37 143 0 19195 172 59 40 chr12 9164224 9165128 -135117361 + L1MA3 LINE L1 6365 7251 -473 215 330 57 0 chr12 9165182 9165270 -135117219 + L2 LINE L2 2386 2478 -836 692 176 0 8 chr12 9165286 9165405 -135117084 - FLAM_C SINE Alu -25 118 1 298 390 14 0 chr12 9165419 9165560 -135116929 + L2 LINE L2 2496 2638 -676 276 149 0 0 chr12 9165564 9165611 -135116878 + (CATA)n Simple_repeat Simple_repeat 2 48 0 670 181 35 0 chr12 9165614 9165730 -135116759 - FLAM_A SINE Alu -13 120 1 1955 221 14 55 chr12 9165752 9166336 -135116153 - L1ME1 LINE L1 -5 6161 5602 2398 130 57 116 chr12 9166336 9166899 -135115590 - Tigger3b DNA MER2_type -1 1230 701 1257 139 5 0 chr12 9166913 9167100 -135115389 - AluSg/x SINE Alu -5 305 118 3466 119 40 39 chr12 9167104 9167498 -135114991 - Tigger3b DNA MER2_type -2345 683 286 949 179 0 24 chr12 9167498 9167666 -135114823 + FAM SINE Alu 1 164 -11 3466 119 40 39 chr12 9167666 9167941 -135114548 - Tigger3b DNA MER2_type -2742 286 13 1477 138 44 40 chr12 9167973 9168248 -135114241 + MER21B LTR ERV1 16 291 -572 2963 176 46 37 chr12 9168263 9168915 -135113574 + MER21B LTR ERV1 203 860 -3 1128 235 41 72 chr12 9168923 9169074 -135113415 - L1ME1 LINE L1 -1011 5135 4981 1612 216 7 0 chr12 9169074 9169375 -135113114 - AluJo SINE Alu -9 303 1 1128 235 41 72 chr12 9169375 9169538 -135112951 - L1ME1 LINE L1 -1165 4981 4814 2288 110 7 0 chr12 9169538 9169846 -135112643 - AluSx SINE Alu -2 310 1 1128 235 41 72 chr12 9169846 9170041 -135112448 - L1ME1 LINE L1 -1332 4814 4641 581 358 98 34 chr12 9170423 9170874 -135111615 - L2 LINE L2 -1211 2103 1682 2163 130 0 10 chr12 9170874 9171173 -135111316 + AluSx SINE Alu 1 296 -16 581 358 98 34 chr12 9171173 9171609 -135110880 - L2 LINE L2 -1632 1682 1159 303 328 35 66 chr12 9171891 9172208 -135110281 - L1MC/D LINE L1 -2211 5597 5291 878 204 0 0 chr12 9172388 9172540 -135109949 - AluJb SINE Alu -25 287 136 882 104 30 12 chr12 9172540 9172704 -135109785 - L1MA8 LINE L1 0 6291 6125 298 359 0 12 chr12 9173237 9173404 -135109085 + (CCA)n Simple_repeat Simple_repeat 1 165 0 2285 105 7 3 chr12 9173663 9173969 -135108520 - AluSx SINE Alu -5 307 1 2308 79 0 3 chr12 9173969 9174261 -135108228 - AluSc SINE Alu -18 291 1 658 98 11 179 chr12 9174671 9174719 -135107770 - L1MA8 LINE L1 -152 6139 6085 2064 118 0 14 chr12 9174719 9175008 -135107481 - AluSq SINE Alu -1 312 28 658 98 11 179 chr12 9175008 9175143 -135107346 - L1MA8 LINE L1 -206 6085 5987 2107 111 17 0 chr12 9175285 9175573 -135106916 - AluSx SINE Alu -19 293 1 764 144 0 0 chr12 9175800 9175918 -135106571 - L1MB4 LINE L1 -1 6179 6062 2147 121 0 3 chr12 9175928 9176225 -135106264 - AluSg SINE Alu -14 296 1 3360 117 58 4 chr12 9176580 9177077 -135105412 - MER4E-int LTR ERV1 -6234 524 1 2218 93 7 0 chr12 9177077 9177367 -135105122 - MER4E LTR ERV1 0 766 475 713 164 114 7 chr12 9177370 9177510 -135104979 - MLT1C LTR MaLR -1 466 312 * 728 208 35 0 chr12 9177493 9177637 -135104852 - MLT2B2 LTR ERVL -366 149 1 2875 187 36 76 chr12 9177899 9178621 -135103868 + LTR8A LTR ERV1 35 727 0 1436 212 10 27 chr12 9178676 9178973 -135103516 + AluJo SINE Alu 3 294 -18 327 135 0 0 chr12 9179605 9179657 -135102832 - MLT2F LTR ERVL 0 663 612 4007 145 16 86 chr12 9179657 9179966 -135102523 + Tigger3b DNA MER2_type 1 330 -2698 2255 87 3 7 chr12 9179966 9180266 -135102223 - AluSq SINE Alu -14 299 1 4007 145 16 86 chr12 9180266 9180715 -135101774 + Tigger3b DNA MER2_type 330 809 -2219 3565 57 0 2 chr12 9180715 9181128 -135101361 + L1PA7 LINE L1 5729 6152 -2 3859 121 14 2 chr12 9181128 9181680 -135100809 + L1PA15 LINE L1 5602 6162 -3 4007 145 16 86 chr12 9181680 9181745 -135100744 + Tigger3b DNA MER2_type 700 768 -463 2739 151 36 2 chr12 9183039 9183488 -135099001 + Tigger3b DNA MER2_type 765 1228 -4 1155 216 39 67 chr12 9183492 9183504 -135098985 - MLT2C1 LTR ERVL -51 346 335 1639 173 4 11 chr12 9183504 9183776 -135098713 + AluJo SINE Alu 9 278 -34 1155 216 39 67 chr12 9183776 9184119 -135098370 - MLT2C1 LTR ERVL -62 335 1 1206 84 11 47 chr12 9184262 9184452 -135098037 + AluSq SINE Alu 127 309 -4 231 211 123 13 chr12 9184766 9184883 -135097606 + L3b LINE CR1 1292 1470 -113 1035 281 74 51 chr12 9186094 9186525 -135095964 - HsTC2a DNA Tc2 -242 502 62 2134 126 7 0 chr12 9186574 9186883 -135095606 + AluSx SINE Alu 2 312 0 591 260 120 73 chr12 9186960 9187428 -135095061 + MLT1H1 LTR MaLR 31 555 0 228 290 21 11 chr12 9187428 9187521 -135094968 + MLT1H1-int LTR MaLR 1 94 -1641 227 273 0 0 chr12 9187569 9187624 -135094865 + MST-int LTR MaLR 238 292 -1359 256 250 76 139 chr12 9188499 9188596 -135093893 + MLT1H1-int LTR MaLR 1074 1176 -195 2235 106 3 10 chr12 9188596 9188897 -135093592 - AluSx SINE Alu -13 299 1 256 250 76 139 chr12 9188897 9189115 -135093374 + MLT1H1-int LTR MaLR 1176 1369 -2 950 240 110 98 chr12 9189129 9189662 -135092827 + MLT1H1 LTR MaLR 11 555 0 370 171 14 0 chr12 9189673 9189743 -135092746 - HsTC2a DNA Tc2 -670 74 4 273 332 79 44 chr12 9189760 9189902 -135092587 + L1ME LINE L1 5326 5462 -708 2192 123 0 7 chr12 9189902 9190203 -135092286 + AluSx SINE Alu 1 299 -13 273 332 79 44 chr12 9190203 9190570 -135091919 + L1ME LINE L1 5462 5851 -319 789 170 23 29 chr12 9190589 9190786 -135091703 + L1MCa LINE L1 1 164 -5881 * 1782 188 99 11 chr12 9190781 9191227 -135091262 + L1MCa LINE L1 709 1193 -4852 * 3407 65 39 11 chr12 9191217 9191676 -135090813 + L1PA10 LINE L1 5654 6125 -43 * 4249 200 142 18 chr12 9191668 9192377 -135090112 + L1MCa LINE L1 1242 1861 -4703 1610 223 3 0 chr12 9192377 9192673 -135089816 - AluJo SINE Alu -15 297 1 4249 200 142 18 chr12 9192673 9193854 -135088635 + L1MCa LINE L1 1861 3371 -3193 2537 226 55 2 chr12 9193861 9194464 -135088025 + L1MCa LINE L1 4032 4666 -1898 189 0 0 0 chr12 9195170 9195191 -135087298 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 4996 124 42 129 chr12 9195931 9197160 -135085329 + MER52C LTR ERV1 59 1180 -98 855 275 42 4 chr12 9198169 9198411 -135084078 + MIR SINE MIR 4 246 -16 3466 148 69 69 chr12 9198491 9199086 -135083403 + MER6 DNA MER2_type 1 598 -267 4271 122 24 0 chr12 9199086 9199674 -135082815 + LTR26 LTR ERV1 2 603 0 3466 148 69 69 chr12 9199674 9199844 -135082645 + MER6 DNA MER2_type 597 766 -99 28 0 0 0 chr12 9199844 9199872 -135082617 + AT_rich Low_complexity Low_complexity 1 28 0 1083 172 29 25 chr12 9199960 9200198 -135082291 - L1MA4 LINE L1 -6 6294 6056 610 186 0 0 chr12 9200200 9200302 -135082187 + MER6 DNA MER2_type 763 864 -1 1456 188 8 0 chr12 9200305 9200539 -135081950 + MER46A DNA MER2_type 1 236 0 241 323 0 16 chr12 9200611 9200673 -135081816 - MIR SINE MIR -112 96 36 216 0 0 0 chr12 9202084 9202108 -135080381 + (TG)n Simple_repeat Simple_repeat 2 25 0 1266 174 4 34 chr12 9202136 9202372 -135080117 - AluJo SINE Alu -83 229 1 1994 140 3 3 chr12 9202749 9203042 -135079447 + L1PB4 LINE L1 5863 6155 -1 191 102 34 34 chr12 9203730 9203789 -135078700 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 257 270 29 29 chr12 9203941 9204078 -135078411 + (CATATA)n Simple_repeat Simple_repeat 3 139 0 23 54 0 0 chr12 9205171 9205208 -135077281 + AT_rich Low_complexity Low_complexity 1 37 0 1652 170 21 18 chr12 9205221 9205504 -135076985 - AluJb SINE Alu -28 284 1 2455 66 20 0 chr12 9205516 9205701 -135076788 - AluY SINE Alu -4 307 112 225 0 0 0 chr12 9205701 9205726 -135076763 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 2455 66 20 0 chr12 9205726 9205841 -135076648 - AluY SINE Alu -199 112 1 205 242 30 45 chr12 9205936 9206002 -135076487 - MER5B DNA MER1_type -1 177 113 1180 128 6 11 chr12 9206002 9206182 -135076307 + AluSg/x SINE Alu 132 310 0 194 317 40 50 chr12 9206182 9206283 -135076206 - MER5A DNA MER1_type -52 137 38 876 189 109 144 chr12 9206631 9206944 -135075545 - AluJo SINE Alu 0 302 1 908 157 0 0 chr12 9207051 9207185 -135075304 + AluJo SINE Alu 1 134 -178 313 200 0 0 chr12 9207414 9207469 -135075020 + LTR29 LTR ERV1 1 55 -567 379 147 52 7 chr12 9208067 9208203 -135074286 + (TA)n Simple_repeat Simple_repeat 2 143 0 223 101 63 25 chr12 9208219 9208298 -135074191 + (TTATA)n Simple_repeat Simple_repeat 4 85 0 679 167 0 0 chr12 9208592 9208688 -135073801 - AluJ/FLAM SINE Alu -215 97 2 224 429 34 0 chr12 9209246 9209393 -135073096 + L2 LINE L2 3116 3267 -5 440 235 220 0 chr12 9209674 9209806 -135072683 + MIR SINE MIR 17 177 -85 4765 179 139 142 chr12 9210691 9212189 -135070300 + MER52A LTR ERV1 30 1753 -2 22 0 0 0 chr12 9212511 9212533 -135069956 + AT_rich Low_complexity Low_complexity 1 22 0 202 312 52 26 chr12 9215776 9215853 -135066636 + L2 LINE L2 3169 3247 -25 300 266 29 92 chr12 9216223 9216345 -135066144 - MER5A DNA MER1_type 0 189 80 2339 71 10 7 chr12 9216345 9216639 -135065850 - AluSp SINE Alu -18 295 1 300 266 29 92 chr12 9216639 9216689 -135065800 - MER5A DNA MER1_type -109 80 28 24 32 0 0 chr12 9216935 9216966 -135065523 + AT_rich Low_complexity Low_complexity 1 31 0 2177 159 0 3 chr12 9216972 9217312 -135065177 - L1PA13 LINE L1 -19 6144 5806 2148 142 0 0 chr12 9219325 9219627 -135062862 + AluSx SINE Alu 1 302 -10 383 302 78 40 chr12 9220750 9221137 -135061352 + L1ME3A LINE L1 5488 5902 -268 229 295 116 27 chr12 9221296 9221408 -135061081 + L1ME3A LINE L1 5965 6086 -84 852 231 36 10 chr12 9221750 9221945 -135060544 - MIR SINE MIR -2 260 61 332 148 0 19 chr12 9221981 9222035 -135060454 + Tigger5 DNA MER2_type 2 54 -2269 * 368 174 14 14 chr12 9222008 9222077 -135060412 + Tigger5 DNA MER2_type 2255 2323 0 4743 75 2 0 chr12 9223593 9224170 -135058319 - L1PA8A LINE L1 -9 6122 5545 254 193 148 11 chr12 9224661 9224749 -135057740 + MIR SINE MIR 150 249 -13 21 57 0 0 chr12 9225514 9225549 -135056940 + AT_rich Low_complexity Low_complexity 1 35 0 341 313 90 43 chr12 9226646 9226902 -135055587 + L1ME LINE L1 5286 5553 -2489 5131 262 32 37 chr12 9226962 9228376 -135054113 + L1M3b LINE L1 11 1418 -4863 2075 21 4 0 chr12 9228373 9228610 -135053879 - L1P2 LINE L1 -435 5720 5483 * 2589 35 0 0 chr12 9228610 9228920 -135053569 + L1PA5 LINE L1 5842 6152 -2 10659 215 50 32 chr12 9228958 9231780 -135050709 + L1MA7 LINE L1 2267 5172 -2393 469 239 128 0 chr12 9231780 9231889 -135050600 + FLAM_A SINE Alu 1 123 -10 10659 215 50 32 chr12 9231889 9232764 -135049725 + L1MA7 LINE L1 5172 6030 -1535 2315 186 70 15 chr12 9232763 9233294 -135049195 + L1MA7 LINE L1 7141 7700 -10 * 230 304 45 9 chr12 9233503 9233615 -135048874 + L1ME LINE L1 5768 5883 -279 489 297 22 6 chr12 9233857 9234039 -135048450 + HAL1b LINE L1 606 790 -558 2253 114 0 0 chr12 9234978 9235277 -135047212 + AluSx SINE Alu 1 299 -13 22 56 0 0 chr12 9235333 9235369 -135047120 + AT_rich Low_complexity Low_complexity 1 36 0 1522 232 50 47 chr12 9237521 9238170 -135044319 + L1M3de LINE L1 154 1184 -5469 * 3725 159 39 23 chr12 9238156 9238899 -135043590 + L1MA9 LINE L1 5519 6273 -39 413 38 0 0 chr12 9239298 9239351 -135043138 + AluY SINE Alu 1 53 -257 298 67 0 150 chr12 9239351 9239451 -135043038 + Alu SINE Alu 230 320 0 732 173 35 126 chr12 9239809 9240064 -135042425 + MER63 DNA MER1_type 5 236 -825 332 219 0 0 chr12 9240108 9240172 -135042317 - MER63 DNA MER1_type -534 526 463 263 174 0 0 chr12 9240144 9240190 -135042299 + MER63 DNA MER1_type 244 289 -772 * 22 0 0 0 chr12 9240464 9240486 -135042003 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 9240631 9240653 -135041836 + AT_rich Low_complexity Low_complexity 1 22 0 2921 6 0 0 chr12 9241262 9241578 -135040911 - AluYb8 SINE Alu -2 316 1 407 240 25 58 chr12 9242342 9242463 -135040026 + L2 LINE L2 3195 3311 -2 25 65 0 0 chr12 9242643 9242689 -135039800 + AT_rich Low_complexity Low_complexity 1 46 0 2195 110 10 0 chr12 9243149 9243450 -135039039 - AluSx SINE Alu -8 304 1 180 0 0 0 chr12 9243950 9243970 -135038519 + (TA)n Simple_repeat Simple_repeat 1 20 0 351 291 49 21 chr12 9244731 9244895 -135037594 + MIR SINE MIR 36 206 -2 249 33 0 0 chr12 9245947 9245977 -135036512 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 761 169 0 0 chr12 9245980 9246098 -135036391 - FLAM_C SINE Alu -15 118 1 1606 64 3 158 chr12 9246269 9246580 -135035909 + L1PB1 LINE L1 5885 6147 -4 1782 156 3 3 chr12 9247746 9248035 -135034454 - AluJb SINE Alu -23 289 1 199 236 55 18 chr12 9248301 9248356 -135034133 + L2 LINE L2 3215 3271 -1 475 254 16 8 chr12 9248734 9248860 -135033629 - MIR SINE MIR -48 214 88 3605 154 16 2 chr12 9248947 9249557 -135032932 - L1MB2 LINE L1 -21 6150 5532 658 281 45 23 chr12 9249978 9250199 -135032290 - L2 LINE L2 -4 3309 3084 1075 157 0 5 chr12 9252400 9252591 -135029898 - L1MA4A LINE L1 -14 6289 6100 208 77 51 0 chr12 9253472 9253511 -135028978 + A-rich Low_complexity Low_complexity 1 41 0 2312 71 0 3 chr12 9253619 9253945 -135028544 - AluY SINE Alu 0 325 1 866 83 15 8 chr12 9255927 9256060 -135026429 + L1MA2 LINE L1 6075 6208 -96 567 105 0 0 chr12 9256148 9256234 -135026255 + L1MA3 LINE L1 6220 6305 0 25 51 0 0 chr12 9256606 9256645 -135025844 + AT_rich Low_complexity Low_complexity 1 39 0 473 306 81 47 chr12 9256677 9256935 -135025554 - L2 LINE L2 -1 3312 3046 * 757 312 80 13 chr12 9256914 9257215 -135025274 - L2 LINE L2 -644 2670 2350 207 100 0 0 chr12 9259477 9259507 -135022982 + (CATA)n Simple_repeat Simple_repeat 2 31 0 1604 225 73 90 chr12 9259807 9260833 -135021656 - Charlie2 DNA MER1_type -2 2860 1852 653 277 142 12 chr12 9260832 9261085 -135021404 - Charlie2 DNA MER1_type -2458 324 39 * 219 167 0 0 chr12 9262179 9262221 -135020268 + (TCCA)n Simple_repeat Simple_repeat 4 45 0 264 374 41 0 chr12 9262227 9262374 -135020115 - L2 LINE L2 0 3313 3161 374 389 0 19 chr12 9262489 9262651 -135019838 - L2 LINE L2 -181 3091 2933 267 338 76 59 chr12 9262762 9263220 -135019269 - L2 LINE L2 -582 2732 2267 1128 173 54 29 chr12 9263223 9263501 -135018988 - MER33 DNA MER1_type 0 324 40 372 277 72 12 chr12 9263518 9263682 -135018807 - MER112 DNA MER1_type -7 253 80 1090 300 76 17 chr12 9263682 9264158 -135018331 + MLT1J LTR MaLR 1 504 -7 274 340 88 26 chr12 9264335 9264641 -135017848 - L2 LINE L2 -1053 2261 1937 277 248 32 61 chr12 9265448 9265579 -135016910 + MIR SINE MIR 39 176 -79 288 0 0 0 chr12 9266372 9266404 -135016085 + (TG)n Simple_repeat Simple_repeat 2 33 0 1696 188 0 17 chr12 9266405 9266703 -135015786 - AluJo SINE Alu -17 295 3 2056 101 0 0 chr12 9266812 9267089 -135015400 + AluSc SINE Alu 33 309 0 644 212 117 9 chr12 9268193 9268424 -135014065 - Charlie2a DNA MER1_type -1393 1469 1214 247 230 188 5 chr12 9268463 9268676 -135013813 - Charlie2a DNA MER1_type -1731 1131 880 2978 153 60 6 chr12 9268685 9269201 -135013288 - MER44D DNA MER2_type -1 604 6 474 208 14 32 chr12 9269376 9269481 -135013008 + L1MC5 LINE L1 6774 6879 -1163 1776 71 8 0 chr12 9269481 9269719 -135012770 - MER75B DNA T2_type 0 243 4 474 208 14 32 chr12 9269719 9269754 -135012735 + L1MC5 LINE L1 6879 6987 -1055 5270 130 125 62 chr12 9269758 9270950 -135011539 + MER52C LTR ERV1 1 1267 -11 292 197 79 0 chr12 9271064 9271140 -135011349 - L1MA8 LINE L1 -5 6286 6205 2216 102 0 0 chr12 9271246 9271552 -135010937 - AluSg SINE Alu 0 306 1 188 88 59 0 chr12 9274565 9274599 -135007890 + CT-rich Low_complexity Low_complexity 3 38 0 22 0 0 0 chr12 9274739 9274761 -135007728 + AT_rich Low_complexity Low_complexity 1 22 0 1967 64 98 4 chr12 9275099 9275365 -135007124 - AluY SINE Alu -18 293 3 4398 193 37 15 chr12 9275367 9276808 -135005681 - L1MB2 LINE L1 -47 6124 4645 21 0 0 0 chr12 9276861 9276882 -135005607 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr12 9276931 9276967 -135005522 + AT_rich Low_complexity Low_complexity 1 36 0 460 217 83 50 chr12 9277094 9277214 -135005275 + L2 LINE L2 3189 3312 -1 207 208 21 10 chr12 9277225 9277321 -135005168 + (TA)n Simple_repeat Simple_repeat 2 98 0 343 305 86 94 chr12 9277474 9277835 -135004654 + MLT1L LTR MaLR 154 521 0 323 348 136 24 chr12 9277935 9278222 -135004267 - L2 LINE L2 -462 2852 2534 279 253 101 0 chr12 9278389 9278468 -135004021 - MER104 DNA Tc2 -88 92 6 293 311 90 0 chr12 9278481 9278603 -135003886 - MIR SINE MIR -6 256 124 268 290 21 21 chr12 9278667 9278760 -135003729 - L2 LINE L2 -965 2349 2257 555 335 133 31 chr12 9278868 9279319 -135003170 - L2 LINE L2 0 3313 2817 321 379 109 11 chr12 9279298 9279583 -135002906 - L2 LINE L2 -1047 2267 1955 * 1858 158 32 6 chr12 9279928 9280276 -135002213 - L1MB1 LINE L1 -1 5991 5635 275 203 14 0 chr12 9282048 9282122 -135000367 + (TA)n Simple_repeat Simple_repeat 2 76 0 10901 208 41 9 chr12 9282129 9285269 -134997220 - L1MB1 LINE L1 -594 5398 2149 2922 65 29 2 chr12 9285271 9285686 -134996803 - LTR19A LTR ERV1 0 486 61 2372 88 0 0 chr12 9285686 9286015 -134996474 - LTR19A-int LTR ERV1 -132 5454 5126 * 3697 80 4 0 chr12 9286010 9286524 -134995965 - LTR19A-int LTR ERV1 -1205 4381 3866 22242 75 40 38 chr12 9286552 9290037 -134992452 - LTR19A-int LTR ERV1 -2091 3495 1 3620 63 25 0 chr12 9290037 9290511 -134991978 - LTR19A LTR ERV1 0 486 1 2635 258 78 51 chr12 9290511 9293197 -134989292 - L1MB1 LINE L1 -3819 2151 2 550 330 99 36 chr12 9293260 9293593 -134988896 + L2 LINE L2 225 578 -2736 736 142 154 0 chr12 9293642 9293811 -134988678 - L1MA8 LINE L1 -21 6270 6076 385 308 208 23 chr12 9293811 9294243 -134988246 + L2 LINE L2 568 1079 -2235 565 240 129 0 chr12 9294600 9294771 -134987718 - MER58A DNA MER1_type -3 221 29 1419 131 0 5 chr12 9295785 9296018 -134986471 - AluSg/x SINE Alu 0 317 86 278 317 58 19 chr12 9298001 9298105 -134984384 + MER5A DNA MER1_type 36 143 -46 320 242 61 0 chr12 9298173 9298272 -134984217 + L1M4 LINE L1 2375 2479 -3667 585 245 37 18 chr12 9299697 9299860 -134982629 + MER20 DNA MER1_type 54 219 0 279 54 0 0 chr12 9301000 9301037 -134981452 + (TTG)n Simple_repeat Simple_repeat 3 39 0 239 139 0 0 chr12 9301523 9301559 -134980930 + U2 snRNA snRNA 1 36 -152 213 39 0 0 chr12 9302421 9302447 -134980042 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1578 87 48 0 chr12 9302458 9302687 -134979802 - L1PA10 LINE L1 -11 6157 5918 1605 174 14 18 chr12 9303493 9303774 -134978715 - AluJo SINE Alu -32 280 1 276 100 0 0 chr12 9304254 9304294 -134978195 + (T)n Simple_repeat Simple_repeat 1 40 0 389 296 44 7 chr12 9304797 9304932 -134977557 + MIR SINE MIR 59 198 -64 2182 112 43 125 chr12 9304933 9305396 -134977093 + MSTC LTR MaLR 4 428 0 2402 39 0 4 chr12 9306171 9306451 -134976038 + AluY SINE Alu 20 298 -13 252 269 70 58 chr12 9306680 9306864 -134975625 + MIR SINE MIR 1 262 0 1917 132 14 0 chr12 9307492 9307781 -134974708 - AluSx SINE Alu -19 293 1 228 258 191 11 chr12 9307883 9307972 -134974517 + MIR SINE MIR 37 141 -67 1892 89 8 0 chr12 9308285 9308544 -134973945 - L1PA11 LINE L1 -3 6171 5911 1978 65 43 47 chr12 9308713 9308989 -134973500 + AluY SINE Alu 24 298 -13 22 0 0 0 chr12 9310279 9310301 -134972188 + AT_rich Low_complexity Low_complexity 1 22 0 721 195 58 49 chr12 9312897 9313102 -134969387 - L1PA12 LINE L1 -7233 348 142 280 326 23 0 chr12 9313669 9313755 -134968734 - MIR3 SINE MIR -28 180 93 260 358 8 25 chr12 9314754 9314874 -134967615 + MIR3 SINE MIR 55 172 -36 22563 178 20 12 chr12 9315528 9321995 -134960494 + L1PA11 LINE L1 12 7610 -2 279 244 103 114 chr12 9322217 9322561 -134959928 + MLT1F-int LTR MaLR 1023 1731 -4 2078 211 65 36 chr12 9322566 9323093 -134959396 + MLT1F LTR MaLR 1 542 0 4148 168 19 1 chr12 9323634 9324353 -134958136 + MER44D DNA MER2_type 2 605 0 249 324 67 9 chr12 9324836 9324941 -134957548 + L2 LINE L2 3203 3313 0 243 277 151 54 chr12 9325440 9325606 -134956883 + MIR SINE MIR 54 235 -27 198 0 0 0 chr12 9325643 9325665 -134956824 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 718 0 0 0 chr12 9325665 9325745 -134956744 - L1PA2 LINE L1 -12 6143 6064 5485 33 0 0 chr12 9325745 9326438 -134956051 + L1P LINE L1 4567 5259 -887 263 263 44 13 chr12 9327350 9327448 -134955041 + MIR SINE MIR 56 142 -66 757 272 16 4 chr12 9328682 9328928 -134953561 + L1MA9 LINE L1 6025 6273 -39 1774 146 46 7 chr12 9328928 9329208 -134953281 - AluJo SINE Alu -21 291 1 10690 204 73 22 chr12 9329646 9331319 -134951170 + L1PA13 LINE L1 828 2414 -4383 2288 114 7 0 chr12 9331319 9331625 -134950864 - AluSc SINE Alu -1 308 1 10690 204 73 22 chr12 9331625 9332120 -134950369 + L1PA13 LINE L1 2414 2882 -3915 3343 41 5 0 chr12 9332120 9332530 -134949959 + L1PA7 LINE L1 5741 6153 -1 10690 204 73 22 chr12 9332530 9334470 -134948019 + L1PA13 LINE L1 2882 5217 -1580 5376 108 17 61 chr12 9334470 9336223 -134946266 + L1PA12 LINE L1 4441 6161 -7 22 0 0 0 chr12 9336229 9336251 -134946238 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr12 9336905 9336941 -134945548 + AT_rich Low_complexity Low_complexity 1 36 0 34 0 0 0 chr12 9337003 9337037 -134945452 + AT_rich Low_complexity Low_complexity 1 34 0 2619 36 0 0 chr12 9339982 9340283 -134942206 - AluY SINE Alu -10 301 1 367 207 200 41 chr12 9340382 9340527 -134941962 + MIR SINE MIR 24 191 -71 699 191 40 10 chr12 9340549 9340748 -134941741 + L1MA4 LINE L1 6085 6289 -11 28 0 0 0 chr12 9340748 9340776 -134941713 + AT_rich Low_complexity Low_complexity 1 28 0 289 122 0 92 chr12 9340884 9340982 -134941507 + (TTCCC)n Simple_repeat Simple_repeat 3 91 0 1504 169 4 40 chr12 9340995 9341273 -134941216 - AluJo SINE Alu -44 268 1 42 52 0 31 chr12 9341304 9341400 -134941089 + AT_rich Low_complexity Low_complexity 1 93 0 225 117 67 0 chr12 9342864 9342924 -134939565 + (TA)n Simple_repeat Simple_repeat 2 65 0 26 0 0 0 chr12 9342931 9342957 -134939532 + AT_rich Low_complexity Low_complexity 1 26 0 228 109 31 16 chr12 9342970 9343034 -134939455 + (TATAA)n Simple_repeat Simple_repeat 2 66 0 388 92 46 58 chr12 9343075 9343249 -134939240 + (TATAA)n Simple_repeat Simple_repeat 5 176 0 391 105 89 0 chr12 9343249 9343513 -134938976 + (TA)n Simple_repeat Simple_repeat 1 287 0 1398 183 49 28 chr12 9343590 9343874 -134938615 + AluJo SINE Alu 1 290 -22 23 0 0 0 chr12 9347442 9347465 -134935024 + AT_rich Low_complexity Low_complexity 1 23 0 2560 53 0 0 chr12 9348857 9349160 -134933329 - AluY SINE Alu -8 303 1 1418 172 40 30 chr12 9350333 9350630 -134931859 + AluJo SINE Alu 1 300 -12 299 307 87 0 chr12 9350898 9351025 -134931464 - MIR SINE MIR -15 247 110 36 40 0 0 chr12 9351766 9351816 -134930673 + AT_rich Low_complexity Low_complexity 1 50 0 349 336 17 8 chr12 9354578 9354697 -134927792 - L2 LINE L2 -20 3293 3174 21 71 0 0 chr12 9354921 9354963 -134927526 + AT_rich Low_complexity Low_complexity 1 42 0 228 182 23 0 chr12 9355092 9355136 -134927353 + U7 snRNA snRNA 11 55 -8 513 315 75 29 chr12 9355416 9355850 -134926639 - L1ME LINE L1 -298 5823 5365 401 324 60 29 chr12 9356403 9356684 -134925805 - L1ME LINE L1 -355 5766 5477 2797 259 66 20 chr12 9356691 9357952 -134924537 - L1M3c LINE L1 -4575 1390 305 4217 202 11 29 chr12 9358321 9359992 -134922497 - L1MB7 LINE L1 -29 6155 4516 377 196 20 85 chr12 9360427 9360586 -134921903 - L1ME LINE L1 -810 5336 5188 385 226 46 109 chr12 9360779 9361247 -134921242 + MER31-int LTR ERV1 3637 3764 -1172 5594 228 18 1 chr12 9361320 9362055 -134920434 + L1PA15 LINE L1 2425 3195 -2951 189 0 0 0 chr12 9362055 9362076 -134920413 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 5594 228 18 1 chr12 9362076 9362681 -134919808 + L1PA15 LINE L1 3195 3788 -2358 2611 231 25 6 chr12 9362674 9363227 -134919262 - L1 LINE L1 -890 5256 4688 * 260 49 49 0 chr12 9363227 9363268 -134919221 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2611 231 25 6 chr12 9363268 9363346 -134919143 - L1 LINE L1 -1458 4688 4613 3011 107 7 13 chr12 9363354 9363712 -134918777 + L1PB1 LINE L1 5695 6051 -100 2266 102 102 3 chr12 9363712 9364055 -134918434 + MER51B LTR ERV1 1 377 0 3011 107 7 13 chr12 9364055 9364154 -134918335 + L1PB1 LINE L1 6051 6149 -2 2546 189 28 6 chr12 9364177 9364674 -134917815 + L1PA15 LINE L1 3775 4282 -1864 5735 120 32 3 chr12 9364679 9366131 -134916358 + L1PA15 LINE L1 4679 6161 -4 668 229 127 82 chr12 9366156 9366597 -134915892 + LTR37B LTR ERV1 7 467 -1 1804 119 60 0 chr12 9366631 9366939 -134915550 + AluSq SINE Alu 1 324 0 2431 57 0 10 chr12 9367595 9367895 -134914594 - AluY SINE Alu -14 297 1 644 203 0 38 chr12 9368086 9368219 -134914270 - FLAM_A SINE Alu -5 128 1 2274 128 0 0 chr12 9368262 9368568 -134913921 - AluSc SINE Alu -3 306 1 1659 194 67 58 chr12 9368720 9369183 -134913306 - MLT1C LTR MaLR 0 467 1 5596 49 11 7 chr12 9369678 9370390 -134912099 - L1PA6 LINE L1 0 6154 5440 11574 127 22 22 chr12 9370427 9372304 -134910185 - L1P LINE L1 -4205 1941 65 2493 141 35 2 chr12 9372755 9373158 -134909331 - MSTA LTR MaLR 0 428 13 287 304 44 59 chr12 9373214 9373487 -134909002 + L1M4 LINE L1 4731 4999 -1147 1141 256 68 9 chr12 9373536 9373860 -134908629 - L1MD2 LINE L1 -294 6065 5723 467 131 75 0 chr12 9373865 9373972 -134908517 - L1MDa LINE L1 -4076 2464 2350 189 0 0 0 chr12 9375720 9375741 -134906748 + (T)n Simple_repeat Simple_repeat 1 21 0 2299 99 0 13 chr12 9376147 9376461 -134906028 - AluSg SINE Alu 0 310 1 202 275 0 29 chr12 9376773 9376842 -134905647 + (TA)n Simple_repeat Simple_repeat 1 67 0 1732 170 52 0 chr12 9382705 9382993 -134899496 - AluSx SINE Alu -9 303 1 2116 285 81 19 chr12 9383194 9384302 -134898187 - L2 LINE L2 -3 3310 2134 300 266 75 12 chr12 9384436 9384609 -134897880 - MER113 DNA MER1_type? -335 186 3 210 71 0 0 chr12 9384815 9384843 -134897646 + (T)n Simple_repeat Simple_repeat 1 28 0 278 308 0 0 chr12 9385622 9385731 -134896758 + CT-rich Low_complexity Low_complexity 1 109 0 234 105 0 0 chr12 9387793 9387831 -134894658 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 217 132 19 19 chr12 9387829 9387882 -134894607 + CT-rich Low_complexity Low_complexity 1 53 0 * 318 35 0 86 chr12 9388510 9388568 -134893921 + L1PA16 LINE L1 6112 6164 -2 26 98 0 0 chr12 9389185 9389267 -134893222 + AT_rich Low_complexity Low_complexity 1 82 0 282 259 38 84 chr12 9389837 9389968 -134892521 - MIR SINE MIR -71 191 67 265 167 361 0 chr12 9390442 9390514 -134891975 + MLT1J2 LTR MaLR 70 167 -283 300 262 54 102 chr12 9390540 9390761 -134891728 + MLT1J2 LTR MaLR 237 450 0 2453 58 0 16 chr12 9392313 9392644 -134889845 - AluY SINE Alu 0 311 1 217 397 66 0 chr12 9393375 9393511 -134888978 - MIR3 SINE MIR -30 178 34 473 334 113 38 chr12 9393864 9394528 -134887961 + L2 LINE L2 2589 3313 0 190 367 0 0 chr12 9394985 9395045 -134887444 - L2 LINE L2 0 3313 3254 12243 150 20 2 chr12 9395054 9398875 -134883614 + L1PA11 LINE L1 2205 6174 0 2278 60 0 0 chr12 9403736 9404065 -134878424 + AluY SINE Alu 1 329 0 2018 259 99 8 chr12 9404117 9405013 -134877476 + L1M4 LINE L1 2617 3594 -2552 744 230 7 109 chr12 9405003 9405277 -134877212 + MLT1D-int LTR MaLR 419 664 -707 * 775 313 13 5 chr12 9405337 9405561 -134876928 + MLT1D-int LTR MaLR 661 886 -485 354 310 26 9 chr12 9405668 9405781 -134876708 + MLT1D-int LTR MaLR 961 1075 -296 * 381 240 57 91 chr12 9405772 9405947 -134876542 + MLT1D-int LTR MaLR 1188 1356 -15 1927 167 117 65 chr12 9405960 9406440 -134876049 + MLT1D LTR MaLR 1 505 0 34 55 0 0 chr12 9406998 9407053 -134875436 + AT_rich Low_complexity Low_complexity 1 55 0 472 273 77 67 chr12 9407201 9407410 -134875079 - MIR SINE MIR -3 259 49 187 203 27 0 chr12 9408303 9408377 -134874112 + (TA)n Simple_repeat Simple_repeat 1 76 0 2272 64 3 3 chr12 9408793 9409100 -134873389 - AluY SINE Alu 0 307 1 210 204 91 0 chr12 9409448 9409492 -134872997 + L2 LINE L2 584 631 -2683 881 175 92 0 chr12 9409599 9409816 -134872673 - L1MA7 LINE L1 -2 6289 6053 526 327 112 49 chr12 9409823 9410316 -134872173 + L2 LINE L2 2307 2830 -484 1044 219 134 42 chr12 9410543 9411133 -134871356 + MER69 DNA AcHobo 1845 2488 -38 199 284 181 39 chr12 9411794 9412026 -134870463 + L2 LINE L2 1901 2165 -1149 2631 20 0 7 chr12 9412078 9412382 -134870107 - AluY SINE Alu -9 302 1 2330 79 10 0 chr12 9412532 9412824 -134869665 + AluSp SINE Alu 1 295 -18 191 363 66 0 chr12 9412867 9412958 -134869531 + L2 LINE L2 2398 2494 -820 222 330 97 0 chr12 9413396 9413499 -134868990 + L2 LINE L2 3201 3313 0 2027 145 3 7 chr12 9414075 9414385 -134868104 - AluJo SINE Alu -3 309 1 35 71 0 0 chr12 9414529 9414599 -134867890 + AT_rich Low_complexity Low_complexity 1 70 0 363 348 75 40 chr12 9414674 9414793 -134867696 + L2 LINE L2 663 776 -2538 2749 165 12 12 chr12 9414793 9415279 -134867210 + MER66B LTR ERV1 1 486 0 363 348 75 40 chr12 9415279 9415808 -134866681 + L2 LINE L2 776 1334 -1980 482 296 16 53 chr12 9416567 9416756 -134865733 + MER5A DNA MER1_type 8 189 0 239 349 12 0 chr12 9416815 9416901 -134865588 + MIR SINE MIR 164 250 -12 1473 321 43 22 chr12 9417403 9417895 -134864594 + MLT2E LTR ERVL 99 600 -28 600 268 38 6 chr12 9418273 9418430 -134864059 + MIR SINE MIR 53 214 -48 30 0 0 0 chr12 9420378 9420408 -134862081 + AT_rich Low_complexity Low_complexity 1 30 0 1858 158 0 3 chr12 9420436 9420727 -134861762 + AluJb SINE Alu 1 290 -22 230 323 62 0 chr12 9420807 9420924 -134861565 + MIR SINE MIR 67 189 -69 368 54 0 36 chr12 9421825 9421881 -134860608 + (TTTTC)n Simple_repeat Simple_repeat 3 56 0 29 28 0 0 chr12 9424395 9424431 -134858058 + AT_rich Low_complexity Low_complexity 1 36 0 2696 247 104 40 chr12 9424514 9425823 -134856666 - Charlie2a DNA MER1_type -4 2858 1466 993 269 51 31 chr12 9425843 9426233 -134856256 - Charlie2b DNA MER1_type -2090 692 295 1138 266 105 20 chr12 9427398 9428049 -134854440 + L1ME3A LINE L1 5149 5894 -276 602 322 74 49 chr12 9428226 9428713 -134853776 + L2 LINE L2 2815 3313 0 297 0 0 0 chr12 9428975 9429008 -134853481 + (CA)n Simple_repeat Simple_repeat 2 34 0 575 171 9 18 chr12 9430159 9430270 -134852219 - MLT1A2 LTR MaLR 0 374 265 461 243 65 9 chr12 9430742 9430897 -134851592 + MIR SINE MIR 30 191 -66 457 237 173 109 chr12 9431019 9431377 -134851112 - L2 LINE L2 -2 3311 2931 401 245 169 27 chr12 9431853 9432037 -134850452 + MIR SINE MIR 48 257 -5 2393 54 3 22 chr12 9432887 9433203 -134849286 + AluY SINE Alu 1 310 -1 2388 76 0 0 chr12 9434027 9434331 -134848158 - AluY SINE Alu -2 309 6 356 210 38 140 chr12 9434464 9434621 -134847868 - HAL1 LINE L1 -379 2128 1988 945 243 59 53 chr12 9434668 9435005 -134847484 - MLT1A2 LTR MaLR 0 374 36 500 111 100 22 chr12 9435005 9435095 -134847394 - FLAM_A SINE Alu -16 126 30 234 241 19 0 chr12 9435309 9435363 -134847126 - MLT1A2 LTR MaLR -402 55 1 299 320 0 0 chr12 9435377 9435452 -134847037 - HAL1 LINE L1 -1631 876 802 437 312 203 34 chr12 9435482 9436107 -134846382 - HAL1 LINE L1 -1767 740 10 1555 188 11 11 chr12 9436107 9436394 -134846095 - AluJo SINE Alu -25 287 1 23 0 0 0 chr12 9437557 9437580 -134844909 + AT_rich Low_complexity Low_complexity 1 23 0 287 322 81 72 chr12 9437617 9437853 -134844636 - MIR SINE MIR -23 239 2 1461 219 22 70 chr12 9438054 9438456 -134844033 - MLT1B LTR MaLR 0 390 8 694 180 0 23 chr12 9438510 9438638 -134843851 + FLAM_A SINE Alu 8 132 -10 267 54 0 0 chr12 9438667 9438704 -134843785 + (A)n Simple_repeat Simple_repeat 1 37 0 283 379 19 6 chr12 9440701 9440862 -134841627 - MIR SINE MIR -79 183 21 207 290 16 0 chr12 9441094 9441156 -134841333 - L2 LINE L2 -24 3248 3186 314 314 167 40 chr12 9441426 9441779 -134840710 + L2 LINE L2 2873 3270 -2 520 367 86 3 chr12 9442631 9442958 -134839531 - L2 LINE L2 -5 3267 2914 185 200 0 0 chr12 9445951 9445986 -134836503 - MIR SINE MIR -75 133 99 456 254 92 8 chr12 9446139 9446269 -134836220 - MIR SINE MIR -75 187 47 195 292 56 34 chr12 9447233 9447322 -134835167 - MIR SINE MIR -114 148 58 2007 107 6 28 chr12 9448331 9448649 -134833840 + AluSx SINE Alu 1 311 -1 281 256 47 110 chr12 9452136 9452234 -134830255 + MIR SINE MIR 46 128 -134 2259 76 3 3 chr12 9452234 9452537 -134829952 + AluY SINE Alu 1 303 -8 281 256 47 110 chr12 9452537 9452629 -134829860 + MIR SINE MIR 128 224 -38 685 267 174 20 chr12 9453543 9453909 -134828580 - L1MC4 LINE L1 -807 7001 6534 2019 116 30 0 chr12 9453909 9454211 -134828278 - AluSx SINE Alu -1 311 1 685 267 174 20 chr12 9454211 9454354 -134828135 - L1MC4 LINE L1 -1274 6534 6414 460 282 33 14 chr12 9454474 9454687 -134827802 - L1MC4a LINE L1 -1538 6270 6054 556 288 161 8 chr12 9454922 9455160 -134827329 - L1MC4a LINE L1 -473 5648 5419 231 312 0 13 chr12 9455160 9455237 -134827252 - MER5B DNA MER1_type -102 76 1 226 214 0 0 chr12 9461120 9461176 -134821313 + C-rich Low_complexity Low_complexity 5 60 0 2325 77 0 3 chr12 9461882 9462181 -134820308 + AluY SINE Alu 1 298 -13 208 280 0 0 chr12 9462256 9462306 -134820183 + GA-rich Low_complexity Low_complexity 1 50 0 312 303 200 5 chr12 9462998 9463183 -134819306 + L2 LINE L2 2870 3090 -182 517 228 181 0 chr12 9463222 9463371 -134819118 + MIR SINE MIR 25 200 -62 369 360 41 0 chr12 9463472 9463619 -134818870 + L2 LINE L2 3119 3271 -1 200 278 0 37 chr12 9465308 9465362 -134817127 + MIR SINE MIR 103 154 -108 1260 171 72 48 chr12 9465780 9466073 -134816416 + AluJb SINE Alu 5 304 -8 1145 171 116 3 chr12 9466257 9466484 -134816005 + MER33 DNA MER1_type 1 305 -2319 2143 109 7 0 chr12 9466484 9466787 -134815702 - AluSx SINE Alu -7 305 1 1145 171 116 3 chr12 9466787 9466843 -134815646 + MER33 DNA MER1_type 305 353 -10 291 389 72 23 chr12 9467099 9467320 -134815169 - MIR SINE MIR -30 232 1 306 0 0 0 chr12 9467432 9467466 -134815023 + (TA)n Simple_repeat Simple_repeat 1 34 0 208 265 82 20 chr12 9467528 9467626 -134814863 - MIR SINE MIR -55 207 104 4093 91 33 6 chr12 9468508 9469057 -134813432 - LTR6A LTR ERV1 0 564 1 1044 212 24 9 chr12 9469057 9469269 -134813220 - HERVS71 LTR ERV1 -105 8873 8659 * 12706 154 8 10 chr12 9469260 9471243 -134811246 - HERVS71 LTR ERV1 -2023 6955 4977 12468 179 21 10 chr12 9471236 9473371 -134809118 - HERVS71 LTR ERV1 -5477 3501 1344 * 805 174 5 97 chr12 9473384 9473591 -134808898 - MER53 DNA DNA 0 189 2 635 466 0 6 chr12 9473697 9473875 -134808614 + polypyrimidine Low_complexity Low_complexity 2 178 0 692 260 103 55 chr12 9473899 9474474 -134808015 - L2 LINE L2 -38 3275 2676 220 298 96 10 chr12 9474477 9474581 -134807908 + L2 LINE L2 3186 3298 -15 224 77 26 0 chr12 9474584 9474623 -134807866 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 266 305 232 0 chr12 9474792 9474956 -134807533 + L3 LINE CR1 560 761 -816 449 297 40 6 chr12 9475132 9475307 -134807182 - MIR SINE MIR -73 189 9 2881 117 9 14 chr12 9475361 9475804 -134806685 - L1PA13 LINE L1 0 6163 5723 180 0 0 0 chr12 9475812 9475832 -134806657 + (CATAG)n Simple_repeat Simple_repeat 4 23 0 357 332 64 52 chr12 9475843 9476186 -134806303 - L1ME3A LINE L1 -36 6134 5788 990 286 82 23 chr12 9476392 9476924 -134805565 - L1ME3A LINE L1 -465 5705 5140 842 222 156 40 chr12 9477644 9477946 -134804543 - MLT1E LTR MaLR -36 557 221 309 26 0 0 chr12 9477969 9478007 -134804482 + (GA)n Simple_repeat Simple_repeat 1 38 0 748 196 65 7 chr12 9478097 9478250 -134804239 + MLT1A1 LTR MaLR 1 162 -203 1468 219 37 13 chr12 9479020 9479395 -134803094 - MLT1B LTR MaLR -6 384 1 256 335 74 48 chr12 9479413 9479643 -134802846 - L1ME LINE L1 -469 5652 5417 279 336 46 15 chr12 9480187 9480318 -134802171 - L2 LINE L2 -1 3271 3137 4547 60 19 11 chr12 9481984 9483010 -134799479 - MER11A LTR ERVK 0 1266 1 4082 213 63 69 chr12 9483246 9483542 -134798947 - MER89-int LTR ERV1 -5142 1659 1363 1987 206 0 8 chr12 9483542 9483910 -134798579 - MLT1A1 LTR MaLR 0 365 1 4082 213 63 69 chr12 9483910 9484351 -134798138 - MER89-int LTR ERV1 -5438 1363 921 1323 219 13 43 chr12 9484351 9484518 -134797971 - AluJo SINE Alu -7 295 139 405 0 0 0 chr12 9484518 9484563 -134797926 + (TA)n Simple_repeat Simple_repeat 1 45 0 1323 219 13 43 chr12 9484563 9484697 -134797792 - AluJo SINE Alu -163 139 3 4082 213 63 69 chr12 9484697 9485335 -134797154 - MER89-int LTR ERV1 -5880 921 291 253 306 74 25 chr12 9486537 9486658 -134795831 + L2 LINE L2 3138 3264 -8 323 316 140 12 chr12 9486831 9487002 -134795487 + MIR SINE MIR 46 238 -24 348 24 0 0 chr12 9487239 9487280 -134795209 + (TG)n Simple_repeat Simple_repeat 2 42 0 1998 136 0 0 chr12 9487304 9487599 -134794890 - AluSx SINE Alu -17 295 1 203 390 39 0 chr12 9488521 9488598 -134793891 - L2 LINE L2 -36 3277 3198 214 345 109 8 chr12 9488967 9489086 -134793403 + L2 LINE L2 3169 3299 -14 426 283 14 57 chr12 9489671 9489883 -134792606 - L1PBb LINE L1 -5234 970 768 415 181 14 0 chr12 9489993 9490065 -134792424 + MER21B LTR ERV1 1 73 -790 234 0 0 0 chr12 9490801 9490827 -134791662 + (A)n Simple_repeat Simple_repeat 1 26 0 803 161 0 8 chr12 9491307 9491431 -134791058 - FLAM_C SINE Alu -19 124 2 1750 188 35 60 chr12 9491980 9492447 -134790042 + LTR56 LTR ERV1 9 437 0 212 225 0 0 chr12 9493038 9493078 -134789411 + L2 LINE L2 3273 3312 -1 552 294 22 13 chr12 9493356 9493563 -134788926 + MIR SINE MIR 8 262 0 312 312 54 11 chr12 9493948 9494041 -134788448 + MIR3 SINE MIR 85 181 -27 22 56 0 0 chr12 9494547 9494583 -134787906 + AT_rich Low_complexity Low_complexity 1 36 0 1453 186 41 29 chr12 9494654 9495068 -134787421 - SVA Other Other -536 850 432 241 280 51 34 chr12 9496519 9496637 -134785852 + L1ME4a LINE L1 5964 6083 -38 1635 163 3 20 chr12 9496763 9497057 -134785432 + AluJo SINE Alu 4 292 -20 590 214 149 7 chr12 9497944 9498098 -134784391 + MLT1C LTR MaLR 292 467 0 220 365 47 16 chr12 9499067 9499259 -134783230 + MIR3 SINE MIR 4 201 -7 2980 137 41 30 chr12 9499884 9500423 -134782066 - LTR10A LTR ERV1 -64 545 1 14322 75 14 4 chr12 9500469 9501118 -134781371 - L1PA6 LINE L1 0 6154 5513 2346 70 0 3 chr12 9501118 9501419 -134781070 - AluY SINE Alu -11 300 1 14322 75 14 4 chr12 9501419 9505362 -134777127 - L1PA6 LINE L1 -641 5513 1442 1155 164 108 15 chr12 9506637 9506906 -134775583 - L1MB7 LINE L1 0 6184 5891 445 241 141 29 chr12 9506936 9507106 -134775383 + MER90 LTR ERV1 426 614 0 1395 203 10 17 chr12 9508287 9508618 -134773871 - AluJb SINE Alu 0 312 1 474 243 10 0 chr12 9508670 9508773 -134773716 - MIR SINE MIR -116 146 43 499 242 31 40 chr12 9508912 9509071 -134773418 - MIR3 SINE MIR -12 196 39 258 320 29 10 chr12 9509529 9509632 -134772857 + L2 LINE L2 2715 2819 -495 2306 179 94 28 chr12 9509743 9509808 -134772681 - MER101B LTR ERV1 -2 568 509 3233 92 38 5 chr12 9509808 9510253 -134772236 - LTR46 LTR ERV1 0 460 1 2306 179 94 28 chr12 9510253 9510718 -134771771 - MER101B LTR ERV1 -61 509 3 259 298 43 11 chr12 9510800 9510894 -134771595 + L2 LINE L2 3215 3311 -2 1766 182 43 52 chr12 9512413 9512872 -134769617 + LTR56 LTR ERV1 13 437 0 402 298 53 23 chr12 9513825 9513956 -134768533 + MIR SINE MIR 8 142 -120 225 349 70 12 chr12 9513960 9514046 -134768443 - MIR SINE MIR -152 110 20 426 336 118 22 chr12 9515350 9515579 -134766910 + MIR SINE MIR 12 262 0 505 294 36 50 chr12 9515771 9516108 -134766381 + L1ME4a LINE L1 5479 5810 -311 2869 171 0 6 chr12 9516603 9517106 -134765383 - L1PA13 LINE L1 0 6163 5664 304 235 128 39 chr12 9517111 9517213 -134765276 + L1ME4a LINE L1 6000 6110 -11 1113 280 73 22 chr12 9518016 9518470 -134764019 - L1ME3 LINE L1 -244 5918 5442 883 211 16 5 chr12 9518502 9518692 -134763797 - AluJo SINE Alu -1 311 120 346 262 26 84 chr12 9518692 9518817 -134763672 - L1ME3 LINE L1 -743 5403 5272 2299 61 7 0 chr12 9518817 9519111 -134763378 - AluY SINE Alu -1 310 15 346 262 26 84 chr12 9519111 9519293 -134763196 - L1ME3 LINE L1 -874 5272 5124 28 48 0 0 chr12 9519318 9519360 -134763129 + AT_rich Low_complexity Low_complexity 1 42 0 1616 264 55 28 chr12 9519495 9520185 -134762304 - L1ME3 LINE L1 -1120 5026 4318 575 139 0 0 chr12 9520199 9520300 -134762189 - L1MB3 LINE L1 -3 6180 6080 2691 258 53 32 chr12 9520325 9521189 -134761300 - L1ME1 LINE L1 -5 6161 5280 599 275 0 0 chr12 9521195 9521326 -134761163 + FLAM_A SINE Alu 1 131 -2 1944 222 68 0 chr12 9521349 9521773 -134760716 + MLT1D LTR MaLR 1 453 -52 208 203 85 17 chr12 9522696 9522755 -134759734 + L2 LINE L2 2991 3053 -219 207 263 138 25 chr12 9523203 9523283 -134759206 - L2 LINE L2 0 3272 3184 1340 216 88 10 chr12 9523589 9523895 -134758594 - MER2 DNA MER2_type -13 332 3 262 318 37 19 chr12 9524505 9524612 -134757877 - L2 LINE L2 -41 3231 3123 647 229 78 26 chr12 9526142 9526295 -134756194 + MER58B DNA MER1_type 181 341 0 187 268 134 27 chr12 9727383 9727495 -134554994 + MIR SINE MIR 25 148 -114 461 261 92 8 chr12 9728459 9728589 -134553900 + MIR SINE MIR 47 187 -75 543 330 107 25 chr12 9731857 9732184 -134550305 + L2 LINE L2 2914 3267 -5 291 303 173 45 chr12 9733036 9733389 -134549100 - L2 LINE L2 -2 3270 2873 234 274 16 0 chr12 9733659 9733721 -134548768 + L2 LINE L2 3186 3248 -24 297 317 50 37 chr12 9733953 9734114 -134548375 + MIR SINE MIR 21 183 -79 249 57 0 0 chr12 9736111 9736146 -134546343 + (T)n Simple_repeat Simple_repeat 1 35 0 686 180 0 23 chr12 9736175 9736303 -134546186 - FLAM_A SINE Alu -10 132 8 1370 219 22 70 chr12 9736357 9736759 -134545730 + MLT1B LTR MaLR 8 390 0 313 284 87 83 chr12 9736978 9737196 -134545293 + MIR SINE MIR 21 239 -23 23 0 0 0 chr12 9737233 9737256 -134545233 + AT_rich Low_complexity Low_complexity 1 23 0 180 264 0 83 chr12 9737774 9737846 -134544643 - L2 LINE L2 -12 3260 3195 1648 188 11 11 chr12 9738419 9738706 -134543783 + AluJo SINE Alu 1 287 -25 792 298 206 37 chr12 9738706 9739331 -134543158 + HAL1 LINE L1 10 740 -1767 270 320 0 0 chr12 9739361 9739436 -134543053 + HAL1 LINE L1 802 876 -1631 478 122 100 22 chr12 9739718 9739808 -134542681 + FLAM_A SINE Alu 30 126 -16 840 252 59 53 chr12 9739808 9740145 -134542344 + MLT1A2 LTR MaLR 36 374 0 347 208 109 126 chr12 9740166 9740349 -134542140 + HAL1 LINE L1 1949 2128 -379 2109 81 4 0 chr12 9740482 9740743 -134541746 + AluY SINE Alu 1 262 -49 2528 58 3 10 chr12 9741575 9741887 -134540602 - AluY SINE Alu -1 310 1 475 231 202 35 chr12 9742735 9742938 -134539551 - MIR SINE MIR -5 257 21 517 237 173 109 chr12 9743395 9743753 -134538736 + L2 LINE L2 2931 3311 -2 495 236 65 9 chr12 9743875 9744030 -134538459 - MIR SINE MIR -66 142 30 542 168 9 19 chr12 9744506 9744613 -134537876 + MLT1A2 LTR MaLR 269 374 0 296 260 57 73 chr12 9746063 9746186 -134536303 + MIR3 SINE MIR 58 178 -30 348 158 13 26 chr12 9746510 9746586 -134535903 + L1M LINE L1 5315 5389 -785 7223 133 143 40 chr12 9746786 9748325 -134534164 - pTR5 LTR ERV1 0 2438 742 269 351 94 25 chr12 9748325 9748601 -134533888 - L2 LINE L2 -466 2848 2554 2175 42 0 27 chr12 9749074 9749334 -134533155 + AluY SINE Alu 51 303 -8 639 291 22 43 chr12 9749334 9749564 -134532925 + MIR SINE MIR 38 262 0 776 250 27 27 chr12 9749630 9749850 -134532639 - MSTB1 LTR MaLR -212 220 1 4227 168 44 58 chr12 9750286 9750888 -134531601 + L1MB2 LINE L1 4929 5538 -633 324 0 0 0 chr12 9750888 9750924 -134531565 + (CA)n Simple_repeat Simple_repeat 1 36 0 1856 179 0 13 chr12 9750924 9751232 -134531257 + AluJo SINE Alu 2 305 -7 4227 168 44 58 chr12 9751232 9751610 -134530879 + L1MB2 LINE L1 5537 5872 -299 1929 172 52 22 chr12 9751610 9751644 -134530845 - MLT2D LTR ERVL 0 414 382 291 28 0 0 chr12 9751644 9751680 -134530809 + (TG)n Simple_repeat Simple_repeat 2 37 0 1929 172 52 22 chr12 9751680 9752047 -134530442 - MLT2D LTR ERVL -32 382 1 4227 168 44 58 chr12 9752047 9752343 -134530146 + L1MB2 LINE L1 5872 6171 0 4658 145 72 8 chr12 9753013 9753325 -134529164 + Tigger3b DNA MER2_type 1 292 -2736 1537 210 13 23 chr12 9753325 9753625 -134528864 - AluJo SINE Alu -15 297 1 4658 145 72 8 chr12 9753625 9754183 -134528306 + Tigger3b DNA MER2_type 292 927 -304 3567 171 73 82 chr12 9754190 9755124 -134527365 - MER21A LTR ERV1 -6 925 1 756 182 45 0 chr12 9755124 9755277 -134527212 + Tigger3b DNA MER2_type 923 1082 -149 1293 160 30 122 chr12 9755279 9755777 -134526712 - MER4A LTR ERV1 0 465 157 1408 334 49 29 chr12 9755795 9756106 -134526383 - MER87-int LTR ERV1 -3756 3366 3063 1716 197 0 16 chr12 9756106 9756411 -134526078 + AluJo SINE Alu 1 300 -12 1408 334 49 29 chr12 9756411 9757235 -134525254 - MER87-int LTR ERV1 -4059 3063 2208 1256 304 73 65 chr12 9757339 9758454 -134524035 - MER87-int LTR ERV1 -5061 2061 937 286 298 116 17 chr12 9758770 9758951 -134523538 - MER87-int LTR ERV1 -6386 736 538 2249 60 4 7 chr12 9759252 9759533 -134522956 + AluY SINE Alu 29 308 -3 344 235 0 0 chr12 9759714 9759782 -134522707 - MER87-int LTR ERV1 -1665 121 54 250 326 35 21 chr12 9759909 9760050 -134522439 - MER87 LTR ERV1 0 541 399 1281 227 55 10 chr12 9760160 9760318 -134522171 - AluJo SINE Alu -8 304 155 225 0 0 0 chr12 9760318 9760343 -134522146 + (TTA)n Simple_repeat Simple_repeat 2 26 0 2611 38 0 0 chr12 9760343 9760632 -134521857 - AluY SINE Alu -22 289 1 185 0 0 39 chr12 9760634 9760660 -134521829 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1281 227 55 10 chr12 9760660 9760788 -134521701 - AluJo SINE Alu -157 155 1 2512 63 0 10 chr12 9761073 9761375 -134521114 - AluY SINE Alu -12 299 1 189 206 95 32 chr12 9761587 9761650 -134520839 - MIR SINE MIR -25 237 171 871 313 29 14 chr12 9761712 9762060 -134520429 - MLT1J LTR MaLR -78 433 81 2162 199 38 52 chr12 9762203 9762705 -134519784 - LTR42 LTR ERVL 0 495 1 365 169 14 0 chr12 9763370 9763441 -134519048 - MER4C LTR ERV1 0 465 394 232 264 0 0 chr12 9763701 9763754 -134518735 + MIR SINE MIR 204 256 -6 343 313 55 43 chr12 9764649 9764812 -134517677 - MIR SINE MIR -47 215 51 309 330 0 0 chr12 9764923 9765011 -134517478 + (TG)n Simple_repeat Simple_repeat 1 88 0 270 0 0 0 chr12 9765393 9765423 -134517066 + (CA)n Simple_repeat Simple_repeat 1 30 0 315 0 0 0 chr12 9765479 9765514 -134516975 + (CA)n Simple_repeat Simple_repeat 1 35 0 355 244 39 31 chr12 9766022 9766149 -134516340 + MLT1C LTR MaLR 53 180 -287 281 100 20 0 chr12 9766149 9766199 -134516290 + (CA)n Simple_repeat Simple_repeat 2 52 0 360 153 153 46 chr12 9767131 9767262 -134515227 - L1ME4a LINE L1 -11 6110 5966 210 37 0 0 chr12 9767270 9767297 -134515192 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 901 203 0 31 chr12 9767416 9767579 -134514910 - FRAM SINE Alu -23 153 1 592 335 111 12 chr12 9767663 9768324 -134514165 - L2 LINE L2 -4 3309 2557 365 355 89 0 chr12 9768957 9769160 -134513329 - MIR SINE MIR -29 233 13 519 284 58 36 chr12 9769694 9769919 -134512570 + L2 LINE L2 2732 2961 -353 2433 211 25 9 chr12 9769925 9770485 -134512004 + LTR24B LTR ERV1 1 569 -7 629 284 78 19 chr12 9770487 9770755 -134511734 + L2 LINE L2 3012 3295 -18 266 340 21 32 chr12 9770983 9771077 -134511412 + MIR SINE MIR 21 113 -95 543 258 50 16 chr12 9771279 9771461 -134511028 + L1MC5 LINE L1 7711 7898 -63 2349 124 0 3 chr12 9771486 9771848 -134510641 + L1PA13 LINE L1 5802 6162 -1 412 284 59 24 chr12 9771851 9772184 -134510305 + L1MEc LINE L1 345 1716 -770 2007 118 61 28 chr12 9772231 9772594 -134509895 + THE1C LTR MaLR 1 375 0 262 270 22 36 chr12 9772787 9772816 -134509673 + L1MC/D LINE L1 5668 5696 -2112 1223 111 0 0 chr12 9772816 9772987 -134509502 + L1PA10 LINE L1 5997 6167 -1 262 270 22 36 chr12 9772987 9773094 -134509395 + L1MC/D LINE L1 5696 5802 -2006 7040 164 20 25 chr12 9773177 9773319 -134509170 + L1PB1 LINE L1 3705 3846 -2305 1774 167 3 11 chr12 9773319 9773601 -134508888 + AluSx SINE Alu 1 280 -32 7040 164 20 25 chr12 9773601 9775921 -134506568 + L1PB1 LINE L1 3846 6145 -6 22 0 0 0 chr12 9775922 9775944 -134506545 + AT_rich Low_complexity Low_complexity 1 22 0 251 271 14 29 chr12 9776166 9776236 -134506253 + L2 LINE L2 3154 3222 -50 1711 158 30 3 chr12 9776711 9777008 -134505481 + AluJb SINE Alu 1 305 -7 291 217 72 111 chr12 9777199 9777434 -134505055 + L1MEd LINE L1 876 1101 -5018 220 349 0 24 chr12 9778220 9778303 -134504186 - MER5A DNA MER1_type -50 139 59 3092 72 2 5 chr12 9778758 9779175 -134503314 + L1PA6 LINE L1 5738 6153 -1 180 111 0 0 chr12 9779191 9779218 -134503271 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 277 368 108 40 chr12 9780479 9780799 -134501690 - L2 LINE L2 -424 2890 2540 2335 83 0 13 chr12 9780799 9781099 -134501390 - AluSg SINE Alu -14 296 1 277 368 108 40 chr12 9781099 9781150 -134501339 - L2 LINE L2 -774 2540 2494 260 340 93 0 chr12 9781172 9781269 -134501220 - L2 LINE L2 -284 3029 2924 * 688 274 66 68 chr12 9781240 9781534 -134500955 - L2 LINE L2 -756 2558 2264 1881 161 13 10 chr12 9781534 9781845 -134500644 + AluJb SINE Alu 1 312 0 688 274 66 68 chr12 9781845 9781930 -134500559 - L2 LINE L2 -1050 2264 2180 233 213 21 0 chr12 9783422 9783469 -134499020 + CT-rich Low_complexity Low_complexity 2 49 0 1619 184 14 0 chr12 9783789 9784072 -134498417 - AluJo SINE Alu -25 287 1 793 298 48 42 chr12 9784168 9784601 -134497888 - LTR16A1 LTR ERVL 0 457 22 2346 76 0 13 chr12 9784822 9785123 -134497366 + AluY SINE Alu 1 297 -14 184 326 174 22 chr12 9787775 9787959 -134494530 - L2 LINE L2 -1244 2070 1859 22 35 0 0 chr12 9788195 9788224 -134494265 + AT_rich Low_complexity Low_complexity 1 29 0 251 308 154 45 chr12 9789344 9789500 -134492989 - MIR SINE MIR -77 185 13 36 70 0 0 chr12 9789588 9789659 -134492830 + AT_rich Low_complexity Low_complexity 1 71 0 755 153 175 34 chr12 9790005 9790182 -134492307 - MER3 DNA MER1_type -1 208 7 23 0 0 0 chr12 9791208 9791231 -134491258 + AT_rich Low_complexity Low_complexity 1 23 0 7463 59 1 3 chr12 9791395 9793104 -134489385 - L1PA5 LINE L1 -13 6141 4418 6982 60 2 0 chr12 9793105 9794529 -134487960 + L1PA7 LINE L1 4728 6153 -1 36 23 0 0 chr12 9794602 9794645 -134487844 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr12 9794865 9794887 -134487602 + AT_rich Low_complexity Low_complexity 1 22 0 669 222 70 35 chr12 9796042 9796213 -134486276 - MIR SINE MIR 0 262 86 2006 111 11 0 chr12 9796259 9796538 -134485951 - AluSx SINE Alu -26 286 5 222 339 57 8 chr12 9796619 9796743 -134485746 - L2 LINE L2 -4 3309 3180 1171 81 6 6 chr12 9796894 9797054 -134485435 + L1PA15 LINE L1 5997 6156 -9 287 333 14 0 chr12 9797586 9797655 -134484834 - MIR SINE MIR -183 79 10 24 0 0 0 chr12 9797860 9797884 -134484605 + AT_rich Low_complexity Low_complexity 1 24 0 2092 95 14 10 chr12 9798671 9798967 -134483522 - AluSq SINE Alu -16 297 1 1927 155 3 10 chr12 9799295 9799598 -134482891 + AluJo SINE Alu 1 301 -11 448 155 0 21 chr12 9799615 9799712 -134482777 + GA-rich Low_complexity Low_complexity 4 98 0 201 297 0 40 chr12 9799820 9799921 -134482568 + (CATATA)n Simple_repeat Simple_repeat 6 102 0 206 225 0 0 chr12 9800544 9800584 -134481905 + (TTCA)n Simple_repeat Simple_repeat 4 43 0 420 225 23 31 chr12 9800641 9800770 -134481719 - MER94 DNA DNA 0 134 7 233 191 96 85 chr12 9800816 9800910 -134481579 - L2 LINE L2 -94 3219 3125 445 252 26 0 chr12 9800944 9801059 -134481430 + MER58 DNA MER1_type 1 118 -97 213 311 0 0 chr12 9801117 9801162 -134481327 - L2 LINE L2 -256 3057 3013 263 140 120 0 chr12 9801217 9801267 -134481222 - MER5A DNA MER1_type 0 189 134 22 56 0 0 chr12 9801480 9801516 -134480973 + AT_rich Low_complexity Low_complexity 1 36 0 306 275 48 24 chr12 9802063 9802230 -134480259 - L1M4 LINE L1 -2947 3199 3029 253 138 52 0 chr12 9802278 9802336 -134480153 - L1MB2 LINE L1 0 6171 6111 189 0 0 0 chr12 9802364 9802385 -134480104 + (TTTTTA)n Simple_repeat Simple_repeat 1 21 0 190 314 186 0 chr12 9802474 9802560 -134479929 - MIR SINE MIR 0 262 161 232 209 30 45 chr12 9802592 9802659 -134479830 + MER92C LTR ERV1 280 345 -209 483 272 16 52 chr12 9806122 9806313 -134476176 - L1MC5 LINE L1 -589 7372 7189 809 192 48 6 chr12 9806325 9806492 -134475997 - MER20 DNA MER1_type -5 214 41 546 57 0 0 chr12 9806725 9806795 -134475694 + (TG)n Simple_repeat Simple_repeat 2 71 0 249 283 183 22 chr12 9810606 9810786 -134471703 + MIR SINE MIR 48 256 -6 222 328 0 0 chr12 9810889 9810947 -134471542 - L2 LINE L2 0 3272 3215 337 242 0 0 chr12 9811090 9811156 -134471333 + MER5A DNA MER1_type 1 66 -123 2316 86 0 10 chr12 9811169 9811472 -134471017 + AluY SINE Alu 1 300 -11 214 200 0 0 chr12 9811544 9811584 -134470905 + (TA)n Simple_repeat Simple_repeat 2 41 0 2193 60 0 11 chr12 9812240 9812522 -134469967 - AluY SINE Alu -11 300 22 362 294 32 81 chr12 9812522 9812770 -134469719 - HAL1 LINE L1 -2121 386 151 391 356 22 46 chr12 9812775 9813143 -134469346 + L2 LINE L2 2615 2973 -341 206 219 31 47 chr12 9813432 9813496 -134468993 + MIR SINE MIR 74 136 -126 258 318 34 45 chr12 9815896 9816075 -134466414 - MIR SINE MIR 0 262 86 263 135 16 95 chr12 9816754 9816880 -134465609 + (TTATA)n Simple_repeat Simple_repeat 2 117 0 36 40 0 0 chr12 9816959 9817009 -134465480 + AT_rich Low_complexity Low_complexity 1 50 0 272 289 48 29 chr12 9817726 9817830 -134464659 - L2 LINE L2 -37 3276 3171 2152 165 71 13 chr12 9817855 9817911 -134464578 - MSTA LTR MaLR -12 416 365 2217 125 0 3 chr12 9817911 9818222 -134464267 + AluSq SINE Alu 1 310 -3 2152 165 71 13 chr12 9818222 9818558 -134463931 - MSTA LTR MaLR -63 365 1 748 319 39 0 chr12 9818589 9818818 -134463671 - MIR SINE MIR -2 260 23 184 0 97 0 chr12 9818906 9818937 -134463552 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 42748 32 23 1 chr12 9818937 9824949 -134457540 - L1PA3 LINE L1 -10 6145 2 317 185 7 206 chr12 9825196 9825342 -134457147 - MER105 DNA DNA -86 118 2 448 302 37 26 chr12 9826011 9826200 -134456289 - LTR67 LTR ERVL -338 219 29 21 0 0 0 chr12 9828104 9828125 -134454364 + AT_rich Low_complexity Low_complexity 1 21 0 863 199 30 102 chr12 9828136 9828321 -134454168 + L1MA6 LINE L1 6053 6250 -50 225 0 0 0 chr12 9828321 9828346 -134454143 + (TG)n Simple_repeat Simple_repeat 2 26 0 863 199 30 102 chr12 9828346 9828374 -134454115 + L1MA6 LINE L1 6250 6248 -52 2074 140 0 7 chr12 9828374 9828674 -134453815 - AluSx SINE Alu -14 298 1 863 199 30 102 chr12 9828674 9828725 -134453764 + L1MA6 LINE L1 6247 6300 0 2296 108 0 0 chr12 9829429 9829735 -134452754 + AluSg SINE Alu 1 306 -4 27 0 0 0 chr12 9830407 9830434 -134452055 + AT_rich Low_complexity Low_complexity 1 27 0 241 284 67 15 chr12 9830526 9830660 -134451829 - L1ME LINE L1 -458 5663 5523 24 32 0 0 chr12 9830827 9830858 -134451631 + AT_rich Low_complexity Low_complexity 1 31 0 2140 124 0 6 chr12 9830899 9831213 -134451276 + AluSx SINE Alu 1 312 0 558 348 6 11 chr12 9831257 9831438 -134451051 - MIR SINE MIR -78 184 5 21 0 0 0 chr12 9832543 9832564 -134449925 + AT_rich Low_complexity Low_complexity 1 21 0 254 279 123 13 chr12 9832725 9832820 -134449669 + MIR SINE MIR 7 112 -96 21 0 0 0 chr12 9833262 9833283 -134449206 + AT_rich Low_complexity Low_complexity 1 21 0 1692 168 41 0 chr12 9834517 9834809 -134447680 + AluJb SINE Alu 1 304 -8 469 313 54 75 chr12 9834859 9835191 -134447298 - L1MC/D LINE L1 -2163 5645 5321 534 303 69 6 chr12 9835986 9836161 -134446328 + MIR SINE MIR 16 201 -61 3742 106 9 110 chr12 9836396 9836680 -134445809 - MER4A LTR ERV1 0 664 353 2184 127 0 0 chr12 9836680 9836980 -134445509 + AluSx SINE Alu 1 300 -12 3742 106 9 110 chr12 9836980 9837433 -134445056 - MER4A LTR ERV1 -311 353 1 216 191 0 0 chr12 9838009 9838051 -134444438 + L2 LINE L2 3271 3312 -1 2345 80 3 26 chr12 9838057 9838369 -134444120 + AluSx SINE Alu 1 305 -7 25 65 0 0 chr12 9839324 9839370 -134443119 + AT_rich Low_complexity Low_complexity 1 46 0 2442 128 163 22 chr12 9840527 9840986 -134441503 - MER1A DNA MER1_type -5 524 1 259 249 54 108 chr12 9840996 9841181 -134441308 + MIR SINE MIR 5 179 -83 * 503 272 133 22 chr12 9841179 9841359 -134441130 - MIR SINE MIR -32 230 31 21 36 0 0 chr12 9841751 9841779 -134440710 + AT_rich Low_complexity Low_complexity 1 28 0 285 182 0 0 chr12 9841786 9841841 -134440648 + (TA)n Simple_repeat Simple_repeat 2 56 0 2031 44 0 0 chr12 9841996 9842245 -134440244 + L1PA3 LINE L1 5906 6154 -1 399 259 188 18 chr12 9843611 9843835 -134438654 - L1ME4a LINE L1 -2 6119 5858 1599 192 3 14 chr12 9844041 9844338 -134438151 + AluSx SINE Alu 1 294 -18 213 196 0 0 chr12 9844341 9844387 -134438102 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 231 36 0 0 chr12 9844389 9844417 -134438072 + (CA)n Simple_repeat Simple_repeat 2 29 0 355 172 62 130 chr12 9844724 9844853 -134437636 - L1MC4 LINE L1 0 8042 7929 381 43 0 0 chr12 9844853 9844900 -134437589 + (CA)n Simple_repeat Simple_repeat 2 48 0 355 172 62 130 chr12 9844900 9844962 -134437527 - L1MC4 LINE L1 -113 7929 7864 654 115 8 41 chr12 9844970 9845092 -134437397 + MER4C LTR ERV1 1 118 -347 657 308 62 47 chr12 9845093 9845557 -134436932 - L1M4 LINE L1 -2884 3262 2792 23 33 0 0 chr12 9846247 9846277 -134436212 + AT_rich Low_complexity Low_complexity 1 30 0 2472 60 0 3 chr12 9846331 9846629 -134435860 + AluY SINE Alu 1 297 -14 676 213 0 0 chr12 9846846 9846973 -134435516 + AluJb SINE Alu 175 301 -11 561 337 89 47 chr12 9847015 9847564 -134434925 - HAL1b LINE L1 -756 592 21 306 0 0 0 chr12 9849457 9849491 -134432998 + (TG)n Simple_repeat Simple_repeat 2 35 0 325 244 32 32 chr12 9849499 9849622 -134432867 + MIR SINE MIR 139 261 -1 2015 154 11 8 chr12 9850209 9850566 -134431923 - Tigger3b DNA MER2_type 0 1231 874 3716 134 34 0 chr12 9850567 9851184 -134431305 - Tigger3b DNA MER2_type -593 638 1 213 65 0 0 chr12 9853451 9853482 -134429007 + (CAA)n Simple_repeat Simple_repeat 3 33 0 208 146 0 24 chr12 9856982 9857023 -134425466 + (TTG)n Simple_repeat Simple_repeat 3 42 0 26 0 0 0 chr12 9857574 9857600 -134424889 + AT_rich Low_complexity Low_complexity 1 26 0 254 309 115 14 chr12 9859710 9859849 -134422640 + MER5A DNA MER1_type 35 187 -2 2177 134 0 0 chr12 9861028 9861319 -134421170 + AluSx SINE Alu 1 291 -21 21 36 0 0 chr12 9861344 9861372 -134421117 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 9861430 9861451 -134421038 + AT_rich Low_complexity Low_complexity 1 21 0 1547 159 90 56 chr12 9862004 9862381 -134420108 - MLT1B LTR MaLR 0 390 1 254 284 92 46 chr12 9862835 9862944 -134419545 - L2 LINE L2 -1 3312 3199 32 75 0 0 chr12 9863439 9863506 -134418983 + AT_rich Low_complexity Low_complexity 1 67 0 1339 209 118 41 chr12 9863761 9864400 -134418089 + SATR1 Satellite Satellite 1 688 -131 3885 99 3 8 chr12 9864411 9865008 -134417481 - HERVE LTR ERV1 -3967 3846 3253 1324 209 100 74 chr12 9865103 9865968 -134416521 + SATR1 Satellite Satellite 1 888 -131 3911 103 2 8 chr12 9865979 9866581 -134415908 - HERVE LTR ERV1 -3967 3846 3249 327 267 140 100 chr12 9867648 9868066 -134414423 + L1MDa LINE L1 527 962 -5578 1088 135 60 0 chr12 9868586 9868786 -134413703 - L1MA2 LINE L1 0 6304 6093 1985 146 3 29 chr12 9869570 9869886 -134412603 - AluSx SINE Alu 0 312 5 2640 192 41 10 chr12 9871328 9871937 -134410552 - L1MA9 LINE L1 -110 6202 5575 184 358 36 29 chr12 9872825 9872962 -134409527 + MIR SINE MIR 52 189 -73 324 286 0 19 chr12 9873358 9873463 -134409026 + (TATATG)n Simple_repeat Simple_repeat 4 106 0 220 277 0 0 chr12 9873815 9873862 -134408627 + polypurine Low_complexity Low_complexity 2 48 0 1061 233 111 13 chr12 9874459 9874577 -134407912 + MLT1C LTR MaLR 53 158 -309 306 87 0 0 chr12 9874577 9874623 -134407866 + (CA)n Simple_repeat Simple_repeat 2 47 0 1061 233 111 13 chr12 9874623 9874882 -134407607 + MLT1C LTR MaLR 158 467 0 978 168 38 43 chr12 9875715 9875924 -134406565 + AluJo SINE Alu 104 311 -1 1465 238 28 16 chr12 9875925 9876362 -134406127 - L1M4 LINE L1 -1921 4225 3784 234 0 0 0 chr12 9876385 9876411 -134406078 + (CA)n Simple_repeat Simple_repeat 1 26 0 582 237 102 14 chr12 9876424 9876707 -134405782 + L1M4 LINE L1 4301 4608 -1538 18661 27 5 0 chr12 9876816 9879826 -134402663 + L1PA2 LINE L1 3131 6152 -3 955 217 45 25 chr12 9879890 9880134 -134402355 - MIR SINE MIR -2 260 12 4537 113 19 9 chr12 9880349 9881036 -134401453 + L1PA14 LINE L1 5468 6161 0 331 204 68 0 chr12 9881939 9882027 -134400462 - LTR50 LTR ERVL -1 794 701 2270 83 6 55 chr12 9883011 9883337 -134399152 - AluSq SINE Alu -1 312 3 689 284 114 8 chr12 9883811 9884047 -134398442 + MER110-int LTR ERV1 2298 2558 -2089 465 228 91 59 chr12 9884086 9884305 -134398184 + MER110-int LTR ERV1 2639 2864 -1783 612 266 72 14 chr12 9884737 9884959 -134397530 + MER106A DNA MER1_type 1 235 -1 234 372 0 12 chr12 9885886 9885972 -134396517 - L3 LINE CR1 -1 1576 1492 1372 218 119 73 chr12 9886054 9886549 -134395940 + MLT1H LTR MaLR 32 549 0 2167 97 10 7 chr12 9886923 9887222 -134395267 + AluSx SINE Alu 1 300 -12 392 301 16 8 chr12 9887508 9887631 -134394858 - L2 LINE L2 -6 3307 3184 319 236 154 32 chr12 9888240 9888363 -134394126 - L2 LINE L2 0 3313 3176 21 0 0 0 chr12 9888925 9888946 -134393543 + AT_rich Low_complexity Low_complexity 1 21 0 3730 170 54 49 chr12 9889552 9889681 -134392808 - L1MA9 LINE L1 -2 6310 6183 180 77 0 0 chr12 9889681 9889707 -134392782 + (TG)n Simple_repeat Simple_repeat 1 26 0 3730 170 54 49 chr12 9889707 9890416 -134392073 - L1MA9 LINE L1 -129 6183 5468 449 316 48 84 chr12 9891882 9892408 -134390081 - MER34 LTR ERV1 -35 507 1 192 227 0 23 chr12 9892448 9892492 -134389997 + MIR SINE MIR 110 152 -110 260 333 94 36 chr12 9893617 9893809 -134388680 + L2 LINE L2 2555 2757 -557 336 219 114 0 chr12 9894995 9895100 -134387389 + MER112 DNA MER1_type 136 252 -8 209 285 128 45 chr12 9896247 9896426 -134386063 - MIR3 SINE MIR -5 203 10 494 387 5 5 chr12 9896888 9897092 -134385397 + MIR SINE MIR 2 205 -57 8127 54 2 1 chr12 9897840 9898805 -134383684 + LTR5 LTR ERVK 1 966 -3 202 139 0 23 chr12 9898985 9899028 -134383461 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 251 200 25 75 chr12 9899359 9899439 -134383050 - L2 LINE L2 -1 3312 3237 28 71 0 0 chr12 9899974 9900030 -134382459 + AT_rich Low_complexity Low_complexity 1 56 0 2084 66 31 45 chr12 9900801 9901111 -134381378 - AluSp SINE Alu 0 306 1 484 282 46 17 chr12 9901208 9901382 -134381107 + MIR SINE MIR 84 262 0 341 335 84 17 chr12 9901634 9901813 -134380676 + L2 LINE L2 2699 2889 -425 800 268 84 86 chr12 9901867 9902215 -134380274 + L2 LINE L2 2849 3197 -116 4637 61 2 0 chr12 9902215 9902802 -134379687 - L1PA6 LINE L1 -1 6153 5566 800 268 84 86 chr12 9902802 9902919 -134379570 + L2 LINE L2 3197 3313 0 444 89 36 18 chr12 9904024 9904136 -134378353 + (TA)n Simple_repeat Simple_repeat 1 114 0 1780 168 24 3 chr12 9904136 9904428 -134378061 - AluJo SINE Alu -14 298 1 264 30 0 0 chr12 9904588 9904621 -134377868 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 1093 67 11 28 chr12 9904623 9904803 -134377686 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 266 174 0 0 chr12 9904814 9904860 -134377629 - MER66A LTR ERV1 -146 332 287 625 182 28 7 chr12 9905519 9905662 -134376827 - MER96B DNA MER1_type? 0 417 272 7215 66 2 0 chr12 9905978 9907677 -134374812 - L1PA5 LINE L1 0 6154 4435 35377 76 10 3 chr12 9907732 9912482 -134370007 + L1P LINE L1 11 4792 -1354 261 119 0 0 chr12 9912482 9912524 -134369965 + L1P LINE L1 4670 4711 -1435 1553 152 105 84 chr12 9913715 9913960 -134368529 + MLT1B LTR MaLR 1 258 -132 2125 102 17 7 chr12 9913960 9914255 -134368234 + AluSg SINE Alu 13 310 0 1553 152 105 84 chr12 9914255 9914391 -134368098 + MLT1B LTR MaLR 258 390 0 3517 163 15 70 chr12 9915165 9915442 -134367047 - L1MB2 LINE L1 -1 6406 6115 2395 81 3 0 chr12 9915442 9915737 -134366752 - AluSx SINE Alu -16 296 1 3517 163 15 70 chr12 9915737 9915978 -134366511 - L1MB2 LINE L1 -292 6115 5862 993 180 59 129 chr12 9915978 9916366 -134366123 - MLT1A1 LTR MaLR -4 361 1 3517 163 15 70 chr12 9916366 9916391 -134366098 - L1MB2 LINE L1 -545 5862 5837 1025 145 6 0 chr12 9916391 9916570 -134365919 + CT-rich Low_complexity Low_complexity 1 180 0 186 43 0 0 chr12 9916579 9916602 -134365887 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3517 163 15 70 chr12 9916602 9916836 -134365653 - L1MB2 LINE L1 -578 5829 5660 3011 172 85 113 chr12 9916836 9917751 -134364738 - L1MCa LINE L1 -5520 906 17 11122 220 44 25 chr12 9917751 9918022 -134364467 - L1MB2 LINE L1 -726 5678 5414 2154 107 3 3 chr12 9918022 9918311 -134364178 - AluSx SINE Alu -23 289 1 11122 220 44 25 chr12 9918311 9919653 -134362836 - L1MB2 LINE L1 -990 5414 4100 1825 173 0 16 chr12 9919653 9919966 -134362523 - AluJo SINE Alu 0 312 5 11122 220 44 25 chr12 9919966 9921460 -134361029 - L1MB2 LINE L1 -2304 4100 2486 600 198 0 0 chr12 9921503 9921604 -134360885 - U6 snRNA snRNA -6 101 1 866 260 42 16 chr12 9921611 9921919 -134360570 - L1MB2 LINE L1 -4050 2334 2019 733 231 60 100 chr12 9921996 9922704 -134359785 - L1M3de LINE L1 -4766 1547 810 267 211 58 10 chr12 9923463 9923567 -134358922 + (TA)n Simple_repeat Simple_repeat 2 110 0 242 238 206 75 chr12 9923966 9924126 -134358363 + MER5A DNA MER1_type 2 182 -7 22 0 0 0 chr12 9924647 9924669 -134357820 + AT_rich Low_complexity Low_complexity 1 22 0 39607 73 11 3 chr12 9924674 9930765 -134351724 - L1PA5 LINE L1 -11 6143 5 1377 178 6 86 chr12 9930776 9931114 -134351375 - LTR9 LTR ERV1 -301 311 1 1344 137 9 5 chr12 9931114 9931315 -134351174 + LTR8 LTR ERV1 490 691 0 275 216 248 52 chr12 9931331 9931484 -134351005 + MER5A DNA MER1_type 7 189 0 2078 207 8 47 chr12 9932299 9932830 -134349659 + MER67D LTR ERV1 1 510 -4 212 331 140 15 chr12 9933027 9933163 -134349326 + L2 LINE L2 2018 2170 -1144 566 277 36 108 chr12 9933198 9933559 -134348930 + L2 LINE L2 2643 2977 -337 1819 189 13 2 chr12 9933581 9933978 -134348511 + L1 LINE L1 4051 4451 -1695 1230 221 40 13 chr12 9933995 9934294 -134348195 - MER61A LTR ERV1 -36 307 1 24643 98 26 19 chr12 9934294 9936225 -134346264 - MER61A-int LTR ERV1 0 5217 3300 2346 100 10 0 chr12 9936225 9936535 -134345954 - AluSp SINE Alu 0 313 1 24643 98 26 19 chr12 9936535 9938739 -134343750 - MER61A-int LTR ERV1 -1917 3300 958 1690 131 49 16 chr12 9938739 9939045 -134343444 - MER61A-int LTR ERV1 -4377 840 525 1172 125 21 0 chr12 9941379 9941571 -134340918 + THE1-int LTR MaLR 310 505 -1075 1308 167 8 0 chr12 9941588 9941833 -134340656 + L1MA5A LINE L1 6051 6297 0 24 0 0 0 chr12 9941920 9941944 -134340545 + AT_rich Low_complexity Low_complexity 1 24 0 601 200 0 62 chr12 9942454 9942500 -134339989 - MER5C DNA MER1_type -200 124 77 2157 114 54 20 chr12 9942500 9942850 -134339639 + THE1B LTR MaLR 1 362 -2 601 200 0 62 chr12 9942850 9942933 -134339556 - MER5C DNA MER1_type -247 77 3 307 138 15 15 chr12 9943898 9943963 -134338526 + (TA)n Simple_repeat Simple_repeat 2 66 0 1095 167 98 20 chr12 9944049 9944300 -134338189 - L1MC2 LINE L1 0 6344 6063 4550 99 67 40 chr12 9944300 9945058 -134337431 - LTR19C LTR ERV1 0 779 1 1095 167 98 20 chr12 9945058 9945112 -134337377 - L1MC2 LINE L1 -281 6063 6015 859 147 42 0 chr12 9946206 9946349 -134336140 - LTR8 LTR ERV1 0 691 543 1661 169 50 33 chr12 9946788 9947125 -134335364 - MER61A LTR ERV1 0 343 1 1055 228 48 10 chr12 9947498 9947810 -134334679 - L1ME1 LINE L1 -15 6151 5828 415 157 72 0 chr12 9947812 9947895 -134334594 - MER92A LTR ERV1 0 412 324 2176 95 14 14 chr12 9947902 9948198 -134334291 + AluY SINE Alu 1 296 -15 267 290 47 0 chr12 9948319 9948426 -134334063 - MER92A LTR ERV1 -299 113 2 950 261 16 4 chr12 9948458 9948715 -134333774 - L1ME1 LINE L1 -395 5771 5512 2312 120 62 10 chr12 9948720 9949120 -134333369 - MSTA LTR MaLR -7 421 1 3848 253 45 17 chr12 9949127 9950750 -134331739 - L1ME1 LINE L1 -751 5395 3840 713 278 155 23 chr12 9951235 9951930 -134330559 - L2 LINE L2 -10 3303 2388 275 232 12 37 chr12 9952221 9952303 -134330186 - Charlie2 DNA MER1_type -2656 126 47 210 370 110 7 chr12 9952807 9952953 -134329536 - MIR SINE MIR -8 254 94 655 165 0 0 chr12 9954424 9954533 -134327956 + THE1-int LTR MaLR 1003 1111 -469 350 109 0 0 chr12 9954533 9954588 -134327901 + L1PA16 LINE L1 6107 6161 -5 388 125 16 0 chr12 9954954 9955018 -134327471 + MER31-int LTR ERV1 2506 2570 -2366 * 1136 190 82 116 chr12 9954997 9955633 -134326856 + MER31-int LTR ERV1 3953 4566 -1765 965 204 184 20 chr12 9955628 9955981 -134326508 + MER31-int LTR ERV1 3400 3810 -1126 * 1977 149 3 0 chr12 9955981 9956277 -134326212 + AluSx SINE Alu 1 297 -15 319 176 14 54 chr12 9956289 9956363 -134326126 + MER31-int LTR ERV1 3886 3956 -980 267 239 60 0 chr12 9956361 9956428 -134326061 + MER31-int LTR ERV1 5310 5380 -951 * 479 286 0 14 chr12 9956449 9956596 -134325893 + MER31-int LTR ERV1 4260 4404 -532 2009 141 0 26 chr12 9956776 9957080 -134325409 - AluSx SINE Alu -16 296 1 1547 204 68 0 chr12 9957632 9957955 -134324534 + MER101 LTR ERV1 24 368 -106 3009 176 16 4 chr12 9958197 9958747 -134323742 - MER41D LTR ERV1 0 557 1 2635 156 11 13 chr12 9958962 9959436 -134323053 - L1PA16 LINE L1 -1 6165 5693 1901 152 12 3 chr12 9959437 9959766 -134322723 + LTR45B LTR ERV1 24 355 -134 1364 306 30 64 chr12 9959902 9960757 -134321732 - L1M3d LINE L1 -5051 840 15 2190 241 54 6 chr12 9960764 9961395 -134321094 + L1MD1 LINE L1 5581 6241 -1 559 307 25 0 chr12 9961462 9961625 -134320864 - MER45A DNA AcHobo -11 167 1 187 279 27 72 chr12 9962046 9962157 -134320332 - MIR SINE MIR -62 200 95 1876 200 86 28 chr12 9962163 9962197 -134320292 - MLT1D LTR MaLR -13 492 461 1967 181 14 14 chr12 9962197 9962562 -134319927 + MLT1A1 LTR MaLR 1 365 0 1876 200 86 28 chr12 9962562 9962992 -134319497 - MLT1D LTR MaLR -44 461 1 2298 107 7 0 chr12 9963066 9963375 -134319114 - AluSx SINE Alu -1 311 1 30 59 0 0 chr12 9963713 9963764 -134318725 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr12 9964129 9964151 -134318338 + AT_rich Low_complexity Low_complexity 1 22 0 1672 95 0 0 chr12 9964151 9964372 -134318117 - AluY SINE Alu -7 304 84 2013 134 39 0 chr12 9964378 9964661 -134317828 - AluSx SINE Alu -18 294 1 292 303 133 12 chr12 9965110 9965275 -134317214 + MIR SINE MIR 63 247 -15 250 236 112 77 chr12 9966187 9966420 -134316069 + L1ME3A LINE L1 5924 6164 -6 591 237 79 62 chr12 9967885 9968189 -134314300 - L1MDb LINE L1 -5318 1091 783 2432 44 10 0 chr12 9968601 9968895 -134313594 - AluY SINE Alu -14 297 1 565 255 36 16 chr12 9969275 9969378 -134313111 - L1MC1 LINE L1 -2 6611 6501 1752 153 131 28 chr12 9969378 9969737 -134312752 - MSTD LTR MaLR 0 396 1 565 255 36 16 chr12 9969737 9969825 -134312664 - L1MC1 LINE L1 -112 6501 6416 * 7319 189 36 51 chr12 9969821 9971920 -134310569 - L1P3 LINE L1 -4370 2091 10 3046 222 69 44 chr12 9971933 9972567 -134309922 - L1MC1 LINE L1 -735 5889 5272 2408 63 3 13 chr12 9972567 9972869 -134309620 - AluY SINE Alu -12 299 1 3046 222 69 44 chr12 9972869 9975084 -134307405 - L1MC1 LINE L1 -1352 5272 3114 1683 189 7 13 chr12 9975084 9975386 -134307103 - AluSx SINE Alu 0 312 13 3046 222 69 44 chr12 9975386 9975906 -134306583 - L1MC1 LINE L1 -3510 3114 2608 1459 236 7 10 chr12 9975906 9976216 -134306273 - AluJo SINE Alu -3 309 1 3046 222 69 44 chr12 9976216 9976993 -134305496 - L1MC1 LINE L1 -4016 2608 1455 285 224 59 0 chr12 9976997 9977082 -134305407 + L1MC2 LINE L1 6246 6335 -9 2480 134 8 0 chr12 9977371 9977743 -134304746 + THE1C LTR MaLR 1 375 0 362 216 43 74 chr12 9977901 9978063 -134304426 - L1MC5 LINE L1 -435 7526 7370 181 148 130 56 chr12 9978366 9978420 -134304069 + L3 LINE CR1 1380 1437 -140 12022 99 16 12 chr12 9979746 9981737 -134300752 - L1PA7 LINE L1 -1 6468 4461 180 0 0 0 chr12 9981737 9981757 -134300732 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 12022 99 16 12 chr12 9981757 9982520 -134299969 - L1PA7 LINE L1 -2008 4461 3703 8060 101 10 15 chr12 9982521 9983681 -134298808 - L1PA7 LINE L1 -5299 1162 8 3433 145 0 11 chr12 9984374 9984906 -134297583 - MER1A DNA MER1_type 0 527 2 249 257 143 38 chr12 9985075 9985180 -134297309 + MIR SINE MIR 46 161 -101 195 69 0 0 chr12 9985245 9985274 -134297215 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 216 0 0 0 chr12 9985566 9985590 -134296899 + (T)n Simple_repeat Simple_repeat 1 24 0 1993 139 13 7 chr12 9985811 9986112 -134296377 + AluSx SINE Alu 1 303 -9 3534 249 38 41 chr12 9986140 9989237 -134293252 + L1M4c LINE L1 31 3333 -3049 21 71 0 0 chr12 9989291 9989333 -134293156 + AT_rich Low_complexity Low_complexity 1 42 0 1963 130 0 14 chr12 9989463 9989796 -134292693 - AluSx SINE Alu 0 348 20 233 259 104 7 chr12 9989866 9990001 -134292488 + L1ME LINE L1 5682 5829 -333 193 316 168 0 chr12 9991018 9991113 -134291376 + L2 LINE L2 3198 3308 -5 1730 178 0 25 chr12 9991175 9991489 -134291000 - AluJb SINE Alu -6 306 1 437 200 200 0 chr12 9992292 9992417 -134290072 + L1MA9 LINE L1 5301 5450 -862 1327 164 19 0 chr12 9992433 9992646 -134289843 - THE1B LTR MaLR -2 362 146 324 48 0 0 chr12 9993231 9993273 -134289216 + (ATG)n Simple_repeat Simple_repeat 3 44 0 22 35 0 0 chr12 9993910 9993939 -134288550 + AT_rich Low_complexity Low_complexity 1 29 0 596 198 60 0 chr12 9993940 9994056 -134288433 - THE1B LTR MaLR -252 123 1 3204 184 62 49 chr12 9994057 9994397 -134288092 + L1MA9 LINE L1 5464 5798 -514 225 94 0 0 chr12 9994397 9994429 -134288060 + (TA)n Simple_repeat Simple_repeat 1 32 0 3204 184 62 49 chr12 9994429 9994472 -134288017 + L1MA9 LINE L1 5798 5839 -473 3739 101 0 4 chr12 9994472 9994985 -134287504 + MER9 LTR ERVK 1 511 0 3204 184 62 49 chr12 9994985 9995400 -134287089 + L1MA9 LINE L1 5839 6274 -38 1488 138 49 30 chr12 9995469 9995774 -134286715 - L1MA7 LINE L1 0 6291 5981 1766 175 49 3 chr12 9995781 9996129 -134286360 + L1 LINE L1 4875 5238 -908 1560 226 107 15 chr12 9996129 9996669 -134285820 + LTR48B LTR ERV1 1 590 -54 1438 246 68 64 chr12 9997043 9997483 -134285006 + MLT2B3 LTR ERVL 1 442 -112 485 163 47 0 chr12 9997768 9997854 -134284635 - MLT2B2 LTR ERVL -425 90 1 2248 203 82 59 chr12 9999185 9999993 -134282496 - LTR1B LTR ERV1 0 826 1 1636 216 0 0 chr12 10000751 10001070 -134281419 - AluJb SINE Alu 0 319 1 10446 166 33 4 chr12 10001783 10004528 -134277961 - L1PA12 LINE L1 0 6168 3355 314 164 15 15 chr12 10004854 10004921 -134277568 + LTR1 LTR ERV1 12 78 -707 * 976 101 7 14 chr12 10004915 10005053 -134277436 + LTR1 LTR ERV1 649 785 0 12158 161 30 12 chr12 10005145 10007163 -134275326 + HUERS-P2 LTR ERV1 207 2260 -828 3859 163 26 8 chr12 10007163 10007820 -134274669 + HUERS-P2 LTR ERV1 2420 3088 0 3824 119 52 103 chr12 10007826 10008635 -134273854 + LTR1 LTR ERV1 18 785 0 22 0 0 0 chr12 10008882 10008904 -134273585 + AT_rich Low_complexity Low_complexity 1 22 0 1085 299 113 80 chr12 10008907 10009438 -134273051 + L2 LINE L2 1932 2547 -767 278 116 70 0 chr12 10009438 10009481 -134273008 + FLAM_A SINE Alu 64 109 -24 1085 299 113 80 chr12 10009481 10009797 -134272692 + L2 LINE L2 2547 2851 -463 1149 257 12 6 chr12 10009856 10010187 -134272302 - L1MCc LINE L1 -1926 5015 4683 2847 42 0 0 chr12 10010306 10010638 -134271851 - LTR2B LTR ERV1 0 490 159 230 333 30 10 chr12 10010646 10010745 -134271744 + L2 LINE L2 2751 2851 -463 1249 20 47 0 chr12 10010826 10010974 -134271515 - LTR2B LTR ERV1 -335 155 1 11714 172 12 6 chr12 10010974 10013012 -134269477 - Harlequin LTR ERV1 0 6896 4846 1151 124 0 0 chr12 10014506 10014667 -134267822 + AluY SINE Alu 3 163 -148 375 250 86 26 chr12 10014741 10014893 -134267596 + MER104 DNA Tc2 15 175 -5 240 217 100 0 chr12 10014890 10014950 -134267539 + MLT1J LTR MaLR 427 492 -19 * 538 264 17 17 chr12 10015031 10015205 -134267284 - L1M4 LINE L1 -1263 4883 4710 1795 237 56 52 chr12 10015205 10015902 -134266587 - L1MCc LINE L1 -3028 3913 3211 1892 175 18 45 chr12 10015902 10016303 -134266186 + MLT1B LTR MaLR 1 390 0 1795 237 56 52 chr12 10016303 10016343 -134266146 - L1MCc LINE L1 -3730 3211 3173 497 263 74 91 chr12 10016350 10016529 -134265960 - L1MCc LINE L1 -5060 1363 1191 929 174 105 65 chr12 10016529 10016620 -134265869 + AluJo SINE Alu 2 88 -214 2462 78 0 0 chr12 10016620 10016927 -134265562 + AluY SINE Alu 1 307 -4 929 174 105 65 chr12 10016927 10017111 -134265378 + AluJo SINE Alu 88 288 -14 497 263 74 91 chr12 10017111 10017270 -134265219 - L1MCc LINE L1 -5232 1191 1031 2251 74 10 7 chr12 10017717 10018016 -134264473 - AluSp SINE Alu -13 300 1 339 374 26 63 chr12 10018030 10018380 -134264109 - L1MCc LINE L1 -5630 792 456 189 276 92 13 chr12 10020406 10020482 -134262007 - L2 LINE L2 0 3313 3232 267 122 0 0 chr12 10020799 10020848 -134261641 + (CA)n Simple_repeat Simple_repeat 2 50 0 1577 275 89 50 chr12 10020850 10021281 -134261208 + L1ME LINE L1 99 512 -5568 1682 186 16 13 chr12 10021281 10021592 -134260897 + AluSx SINE Alu 1 312 0 1577 275 89 50 chr12 10021592 10022643 -134259846 + L1ME LINE L1 512 1643 -4437 532 260 93 51 chr12 10023487 10023918 -134258571 + L1MEd LINE L1 700 1148 -4971 32 67 0 0 chr12 10024399 10024459 -134258030 + AT_rich Low_complexity Low_complexity 1 60 0 196 190 52 35 chr12 10024757 10024815 -134257674 + L3 LINE CR1 623 681 -896 23 54 0 0 chr12 10025723 10025760 -134256729 + AT_rich Low_complexity Low_complexity 1 37 0 357 329 88 7 chr12 10026105 10026242 -134256247 + MIR3 SINE MIR 54 201 -7 325 331 149 11 chr12 10027457 10027632 -134254857 - MIR3 SINE MIR -4 204 6 1675 182 19 3 chr12 10028054 10028361 -134254128 - AluJb SINE Alu 0 312 1 207 416 0 0 chr12 10028669 10028746 -134253743 - L2 LINE L2 -5 3267 3191 311 337 28 72 chr12 10031171 10031420 -134251069 + HAL1 LINE L1 48 285 -2222 2043 37 53 0 chr12 10031832 10032077 -134250412 - AluY SINE Alu -17 294 37 224 283 33 0 chr12 10032181 10032241 -134250248 + L2 LINE L2 3203 3264 -8 2096 119 0 3 chr12 10032360 10032653 -134249836 + AluSg SINE Alu 1 292 -18 1495 233 68 11 chr12 10032777 10033236 -134249253 - L1M4 LINE L1 -1570 4576 4092 234 0 0 0 chr12 10033395 10033421 -134249068 + (TA)n Simple_repeat Simple_repeat 2 27 0 2279 64 0 4 chr12 10033432 10033713 -134248776 - AluY SINE Alu -31 280 1 273 330 16 62 chr12 10034041 10034411 -134248078 - L1MEc LINE L1 -5451 1374 1022 1470 320 70 23 chr12 10034809 10035536 -134246953 - HAL1 LINE L1 -861 1646 856 2163 98 3 23 chr12 10035536 10035841 -134246648 - AluSx SINE Alu -13 299 1 1470 320 70 23 chr12 10035841 10036121 -134246368 - HAL1 LINE L1 -1651 856 591 3980 142 33 40 chr12 10036132 10037519 -134244970 - pTR5 LTR ERV1 0 2438 742 2291 228 66 27 chr12 10037756 10038318 -134244171 - MLT1E LTR MaLR -1 592 9 27 49 0 0 chr12 10038427 10038468 -134244021 + AT_rich Low_complexity Low_complexity 1 41 0 393 278 101 53 chr12 10038928 10039097 -134243392 - MIR SINE MIR -60 202 26 1161 243 116 47 chr12 10039468 10040065 -134242424 - L1ME3 LINE L1 -230 5932 5295 554 279 32 0 chr12 10040094 10040252 -134242237 - L1MEc LINE L1 -5727 815 653 866 217 73 80 chr12 10040254 10040568 -134241921 - L1MEc LINE L1 -5793 749 438 2115 114 0 0 chr12 10040737 10041018 -134241471 - AluSx SINE Alu -27 285 5 416 305 142 0 chr12 10041070 10041267 -134241222 + MIR SINE MIR 38 262 0 198 0 0 0 chr12 10041685 10041707 -134240782 + (TTTAA)n Simple_repeat Simple_repeat 3 24 0 865 189 0 0 chr12 10041707 10041855 -134240634 - FRAM SINE Alu -18 148 1 525 278 10 26 chr12 10042103 10042358 -134240131 - MER20 DNA MER1_type 0 219 1 1502 228 129 42 chr12 10042524 10042997 -134239492 - MER67D LTR ERV1 0 514 1 2072 137 0 0 chr12 10043037 10043336 -134239153 - AluSx SINE Alu -13 299 1 32 98 0 0 chr12 10043566 10043668 -134238821 + AT_rich Low_complexity Low_complexity 1 102 0 606 304 78 18 chr12 10043860 10044195 -134238294 + L1M4 LINE L1 4012 4366 -1780 896 185 98 5 chr12 10044214 10044398 -134238091 - MLT1E2 LTR MaLR -8 618 418 1793 156 131 0 chr12 10044398 10044750 -134237739 + MSTB LTR MaLR 1 398 -28 599 111 0 10 chr12 10044755 10044854 -134237635 + (TTCC)n Simple_repeat Simple_repeat 1 98 0 1641 182 17 3 chr12 10044854 10045156 -134237333 - AluJb SINE Alu -4 308 3 341 286 31 0 chr12 10045197 10045295 -134237194 - MLT1E2 LTR MaLR -204 422 322 580 13 26 0 chr12 10045340 10045417 -134237072 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 286 265 61 0 chr12 10045440 10045538 -134236951 - L1ME3 LINE L1 -893 5253 5150 975 164 29 5 chr12 10045950 10046157 -134236332 - L1MA7 LINE L1 -1 6290 6079 2226 94 13 0 chr12 10046442 10046797 -134235692 + AluSx SINE Alu 1 359 0 473 303 81 30 chr12 10046803 10047199 -134235290 - L1ME4a LINE L1 -58 6063 5648 188 178 22 44 chr12 10048068 10048113 -134234376 - MIR SINE MIR -35 227 184 182 225 70 28 chr12 10048674 10048745 -134233744 - MER5C DNA MER1_type -177 147 74 2193 163 21 39 chr12 10049062 10049498 -134232991 - MSTA LTR MaLR 0 428 1 189 0 0 0 chr12 10052335 10052356 -134230133 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1718 164 0 18 chr12 10054172 10054453 -134228036 + AluJb SINE Alu 5 280 -32 219 36 0 0 chr12 10054453 10054481 -134228008 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2437 222 50 25 chr12 10054600 10055296 -134227193 + L1ME2 LINE L1 5458 6161 -3 2318 50 0 0 chr12 10056304 10056581 -134225908 - AluY SINE Alu -11 300 24 234 0 0 0 chr12 10056860 10056886 -134225603 + (TTA)n Simple_repeat Simple_repeat 2 27 0 299 342 25 0 chr12 10058662 10058782 -134223707 - L2 LINE L2 0 3272 3150 551 329 137 44 chr12 10059388 10060014 -134222475 + L2 LINE L2 2627 3313 0 190 398 82 25 chr12 10060144 10060340 -134222149 - L2 LINE L2 -229 3084 2878 2323 88 0 38 chr12 10060945 10061264 -134221225 - AluSq SINE Alu -6 307 1 391 266 43 125 chr12 10063248 10063552 -134218937 + L1M4 LINE L1 3333 3611 -2535 390 306 90 55 chr12 10063637 10064059 -134218430 + L1M4 LINE L1 3753 4189 -1957 256 235 25 6 chr12 10064090 10064143 -134218346 - L1MD3 LINE L1 -18 7977 7927 2167 122 3 0 chr12 10064143 10064454 -134218035 - AluSx SINE Alu 0 312 1 256 235 25 6 chr12 10064454 10064623 -134217866 - L1MD3 LINE L1 -68 7927 5997 1618 149 29 16 chr12 10064632 10064947 -134217542 - L1MD3 LINE L1 -762 5597 5279 273 272 88 72 chr12 10066592 10067205 -134215284 - L1ME LINE L1 -2499 3581 2959 895 269 5 0 chr12 10067220 10067421 -134215068 + MER58A DNA MER1_type 1 202 -22 358 250 70 6 chr12 10067452 10067608 -134214881 - L1ME LINE L1 -3128 2952 2787 1004 248 113 14 chr12 10067616 10067979 -134214510 - L1ME LINE L1 -3340 2740 2342 1319 227 35 38 chr12 10068092 10068431 -134214058 + MLT2B1 LTR ERVL 1 338 -182 188 35 35 0 chr12 10068580 10068609 -134213880 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 244 224 0 0 chr12 10068667 10068716 -134213773 - MER58A DNA MER1_type -37 70 22 287 85 21 0 chr12 10068747 10068794 -134213695 + (TA)n Simple_repeat Simple_repeat 1 48 0 334 230 125 46 chr12 10068822 10068974 -134213515 - L1ME LINE L1 -5590 480 317 332 83 0 0 chr12 10068981 10069020 -134213469 - MLT2B1 LTR ERVL 0 520 479 414 0 0 0 chr12 10069020 10069066 -134213423 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 910 324 68 13 chr12 10069168 10069548 -134212941 + LTR16B LTR ERVL 64 464 0 236 320 117 0 chr12 10070218 10070321 -134212168 - MLT1L LTR MaLR -171 444 330 263 397 13 13 chr12 10070519 10070675 -134211814 + MIR SINE MIR 102 257 -5 198 0 0 0 chr12 10071049 10071071 -134211418 + (A)n Simple_repeat Simple_repeat 1 22 0 353 314 7 50 chr12 10071342 10071482 -134211007 - L2 LINE L2 0 3313 3180 594 238 18 9 chr12 10071499 10071722 -134210767 - L1M4 LINE L1 -2875 3271 3047 3881 153 35 43 chr12 10071723 10072440 -134210049 - MER50 LTR ERV1 -23 711 1 1469 226 56 16 chr12 10072440 10072883 -134209606 - L1M4 LINE L1 -3096 3050 2590 721 212 191 11 chr12 10072885 10073156 -134209333 + MER4C LTR ERV1 1 419 -178 2498 57 3 0 chr12 10073178 10073477 -134209012 - AluY SINE Alu -11 300 1 859 179 17 6 chr12 10073495 10073668 -134208821 + MER4C LTR ERV1 274 448 -17 372 204 11 21 chr12 10073702 10073795 -134208694 + MER4C-int LTR ERV1 4 95 -6503 310 256 0 12 chr12 10073908 10073994 -134208495 + MER4C-int LTR ERV1 352 436 -6162 891 227 124 23 chr12 10074263 10074562 -134207927 + LTR49 LTR ERV1 263 591 -4 1156 195 58 11 chr12 10074567 10074830 -134207659 + LTR49-int LTR ERV1 3 626 -4591 308 191 63 0 chr12 10074837 10074900 -134207589 + LTR49-int LTR ERV1 1556 1622 -3258 * 977 244 42 23 chr12 10074892 10075185 -134207304 + MER4C-int LTR ERV1 986 1866 -3014 3485 109 6 17 chr12 10075188 10075719 -134206770 - L1PA15 LINE L1 -2 6163 5639 2123 137 20 19 chr12 10075720 10076118 -134206371 + MLT2A2 LTR ERVL 1 309 -144 396 167 0 0 chr12 10076117 10076177 -134206312 - AluS SINE Alu -243 60 1 * 8297 235 22 28 chr12 10076190 10079471 -134203018 - L1PA13 LINE L1 -2438 4359 1094 314 226 29 49 chr12 10079473 10079575 -134202914 - L1MC4 LINE L1 -1339 6703 6604 2383 75 3 31 chr12 10079612 10079932 -134202557 - AluY SINE Alu 0 311 1 830 242 16 5 chr12 10079990 10080176 -134202313 + MER4C-int LTR ERV1 1844 2031 -4300 3991 125 35 8 chr12 10080179 10080801 -134201688 - LTR9B LTR ERV1 0 644 6 978 222 89 89 chr12 10080806 10081151 -134201338 + MER4C-int LTR ERV1 769 1112 -5522 2294 84 3 7 chr12 10081151 10081461 -134201028 - AluSc SINE Alu 0 309 1 978 222 89 89 chr12 10081461 10081607 -134200882 + MER4C-int LTR ERV1 1112 3414 -3220 241 226 65 0 chr12 10081611 10081673 -134200816 + MER34C LTR ERV1 165 230 -355 1523 182 94 100 chr12 10081695 10082658 -134199831 + HUERS-P1 LTR ERV1 1100 3569 -2694 * 4367 152 39 50 chr12 10082655 10084009 -134198480 + HUERS-P1 LTR ERV1 4234 5560 -771 261 184 237 13 chr12 10084009 10084085 -134198404 + LTR37A LTR ERV1 4 96 -330 794 135 43 49 chr12 10084085 10084248 -134198241 + HUERS-P1 LTR ERV1 5638 5799 -532 300 27 0 0 chr12 10084265 10084302 -134198187 + (CA)n Simple_repeat Simple_repeat 1 37 0 814 249 10 10 chr12 10084463 10084660 -134197829 + HUERS-P1 LTR ERV1 6401 6597 -1 619 255 159 8 chr12 10084662 10084935 -134197554 + MER4C LTR ERV1 1 499 -186 501 232 15 71 chr12 10085024 10085222 -134197267 + MER4C LTR ERV1 276 462 -3 1041 250 114 38 chr12 10085232 10085612 -134196877 - L1M4 LINE L1 -3548 3096 2746 1292 184 90 18 chr12 10085612 10085889 -134196600 - AluJo SINE Alu -15 297 1 1041 250 114 38 chr12 10085889 10086573 -134195916 - L1M4 LINE L1 -3898 2746 1919 3861 181 25 5 chr12 10086576 10087660 -134194829 - L1P5 LINE L1 -516 5638 4537 3464 142 54 27 chr12 10087668 10088295 -134194194 + LTR9B LTR ERV1 1 644 0 1752 290 21 38 chr12 10088295 10088902 -134193587 - L1M4 LINE L1 -5936 606 10 194 312 112 69 chr12 10089359 10089702 -134192787 - L2 LINE L2 -710 2604 2242 570 29 0 0 chr12 10089702 10089770 -134192719 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 194 312 112 69 chr12 10089770 10089801 -134192688 - L2 LINE L2 -1072 2242 2214 918 286 135 11 chr12 10089900 10090264 -134192225 + LTR16A LTR ERVL 42 450 0 285 340 21 0 chr12 10091841 10091935 -134190554 + L2 LINE L2 1125 1220 -2094 850 316 217 9 chr12 10091940 10092617 -134189872 + L2 LINE L2 1836 2653 -661 558 242 61 30 chr12 10092662 10092860 -134189629 + L2 LINE L2 3106 3309 -4 391 318 7 20 chr12 10093710 10093858 -134188631 + L2 LINE L2 1879 2024 -1290 323 115 19 0 chr12 10094404 10094456 -134188033 - MADE1 DNA Mariner -27 53 1 26 0 0 0 chr12 10095330 10095356 -134187133 + AT_rich Low_complexity Low_complexity 1 26 0 203 184 0 0 chr12 10095987 10096025 -134186464 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 34 55 0 0 chr12 10097199 10097254 -134185235 + AT_rich Low_complexity Low_complexity 1 55 0 3252 162 11 30 chr12 10097255 10097693 -134184796 - L1MC1 LINE L1 -465 5868 5423 1452 152 8 19 chr12 10097693 10097950 -134184539 - L1PB3 LINE L1 -7 6147 5894 3252 162 11 30 chr12 10097950 10098211 -134184278 - L1MC1 LINE L1 -910 5423 5182 6731 78 3 3 chr12 10098211 10099354 -134183135 - L1PA8 LINE L1 -5 6167 5024 3252 162 11 30 chr12 10099354 10099373 -134183116 - L1MC1 LINE L1 -1151 5182 5164 * 9375 111 20 0 chr12 10099357 10100747 -134181742 + L1P LINE L1 3634 5051 -1095 1486 257 21 50 chr12 10100745 10101364 -134181125 - L1MC1 LINE L1 -945 5201 4601 * 1564 204 19 11 chr12 10101361 10102055 -134180434 - L1M4 LINE L1 -581 5672 4971 1285 265 63 11 chr12 10102063 10102520 -134179969 - L1M4 LINE L1 -2045 4170 3690 1100 216 48 128 chr12 10102528 10102926 -134179563 - MLT1A2 LTR MaLR -8 366 1 1889 244 33 36 chr12 10102927 10103808 -134178681 - L1M4 LINE L1 -2523 3692 2815 486 292 71 28 chr12 10103842 10104047 -134178442 - L1M4 LINE L1 -3856 2359 2164 1615 194 16 16 chr12 10104047 10104357 -134178132 - AluJb SINE Alu -2 310 1 486 292 71 28 chr12 10104357 10104759 -134177730 - L1M4 LINE L1 -4051 2164 1771 481 306 44 55 chr12 10104811 10105225 -134177264 - L1M4c LINE L1 -4416 2147 1596 489 307 5 48 chr12 10105484 10105673 -134176816 - L1ME3 LINE L1 0 6162 5982 374 277 215 30 chr12 10106308 10106680 -134175809 + L3 LINE CR1 586 1026 -551 258 375 42 7 chr12 10106871 10107015 -134175474 + L3 LINE CR1 1192 1340 -237 1184 263 44 54 chr12 10109087 10109459 -134173030 - LTR51 LTR ERV1 -47 624 255 2509 62 0 0 chr12 10109459 10109766 -134172723 + AluY SINE Alu 1 307 -4 1184 263 44 54 chr12 10109766 10109800 -134172689 - LTR51 LTR ERV1 -416 255 222 432 225 22 124 chr12 10110315 10110493 -134171996 + LTR49-int LTR ERV1 2278 2437 -3894 31 0 0 0 chr12 10110499 10110530 -134171959 + AT_rich Low_complexity Low_complexity 1 31 0 731 0 0 0 chr12 10110530 10110614 -134171875 - L1PA3 LINE L1 -4 6151 6068 776 178 19 13 chr12 10110696 10110853 -134171636 - FRAM SINE Alu -25 151 1 2178 242 87 73 chr12 10110942 10112162 -134170327 + L1M2 LINE L1 3 1239 -5610 1698 138 68 31 chr12 10112165 10112519 -134169970 + L1MA4A LINE L1 5937 6303 0 695 359 41 38 chr12 10113027 10113192 -134169297 - ERVL LTR ERVL -570 5194 5031 2217 110 7 0 chr12 10113192 10113492 -134168997 - AluSp SINE Alu -11 302 1 695 359 41 38 chr12 10113492 10113911 -134168578 - ERVL LTR ERVL -733 5031 4608 1875 71 37 37 chr12 10114101 10114369 -134168120 - AluY SINE Alu -4 307 40 200 206 0 0 chr12 10115374 10115408 -134167081 + (CAT)n Simple_repeat Simple_repeat 2 35 0 700 328 54 8 chr12 10115776 10116035 -134166454 - ERVL LTR ERVL -1176 4588 4318 8381 244 32 25 chr12 10116196 10119935 -134162554 + L1PA13 LINE L1 12 2971 -4610 14267 195 18 32 chr12 10119944 10123255 -134159234 + L1PA13 LINE L1 3524 6789 -795 1240 116 0 0 chr12 10123492 10123673 -134158816 - L1PA13 LINE L1 -5 6158 5978 4837 111 23 3 chr12 10123673 10124410 -134158079 + L1PA13 LINE L1 6847 7598 -3 2315 98 0 3 chr12 10125460 10125756 -134156733 - AluSq SINE Alu -18 295 1 253 304 9 9 chr12 10126466 10126578 -134155911 - L1MC4a LINE L1 -1288 6520 6409 1645 174 3 23 chr12 10126846 10127151 -134155338 + AluJo SINE Alu 1 299 -13 225 198 11 55 chr12 10127461 10127552 -134154937 + T-rich Low_complexity Low_complexity 4 90 0 380 257 148 27 chr12 10127679 10128209 -134154280 - L1M4 LINE L1 -1882 4264 3661 675 84 0 0 chr12 10128335 10128430 -134154059 - AluSg/x SINE Alu -1 311 217 26 30 0 0 chr12 10128507 10128540 -134153949 + AT_rich Low_complexity Low_complexity 1 33 0 413 65 0 16 chr12 10130019 10130081 -134152408 + (TG)n Simple_repeat Simple_repeat 1 61 0 359 276 61 0 chr12 10130404 10130502 -134151987 + L2 LINE L2 3210 3313 0 204 258 0 32 chr12 10130993 10131055 -134151434 - L2 LINE L2 -64 3208 3149 22 56 0 0 chr12 10131259 10131295 -134151194 + AT_rich Low_complexity Low_complexity 1 36 0 2945 76 2 19 chr12 10131295 10131714 -134150775 - LTR7 LTR ERV1 -38 412 1 13097 84 5 11 chr12 10131715 10133558 -134148931 - HERVH LTR ERV1 -1 7712 5881 2555 71 3 0 chr12 10133557 10133896 -134148593 + HERVH LTR ERV1 5526 5865 -1848 * 1384 157 137 26 chr12 10134345 10134689 -134147800 - L1MB5 LINE L1 -10 6164 5783 340 274 0 21 chr12 10134700 10134795 -134147694 - L1MC4 LINE L1 -1336 6706 6614 1153 189 0 27 chr12 10134825 10135047 -134147442 - L1M4 LINE L1 -5827 715 500 261 262 48 24 chr12 10136205 10136289 -134146200 + HERVL74 LTR ERVL 1821 1906 -3779 595 210 24 16 chr12 10136303 10136427 -134146062 + MLT1A2 LTR MaLR 1 125 -249 1116 225 92 23 chr12 10136427 10136773 -134145716 - MLT1A2 LTR MaLR -1 373 4 228 234 0 0 chr12 10136776 10136823 -134145666 - MLT1A2-int LTR MaLR 0 1735 1689 3833 184 64 21 chr12 10136851 10137729 -134144760 + L1MB7 LINE L1 5239 6153 -31 228 73 0 24 chr12 10138073 10138114 -134144375 - L1PA13 LINE L1 -732 5436 5397 5065 89 14 18 chr12 10138114 10138848 -134143641 + L1PA13 LINE L1 5430 6160 -3 484 210 30 0 chr12 10139402 10139502 -134142987 - MER96B DNA MER1_type? -312 105 3 37 0 0 0 chr12 10140265 10140302 -134142187 + AT_rich Low_complexity Low_complexity 1 37 0 1738 241 115 2 chr12 10140339 10140791 -134141698 + MLT1D LTR MaLR 3 505 0 23 54 0 0 chr12 10141267 10141304 -134141185 + AT_rich Low_complexity Low_complexity 1 37 0 191 339 74 25 chr12 10141372 10141493 -134140996 - MIR SINE MIR -44 218 92 25315 112 14 90 chr12 10142554 10144711 -134137778 - L1P LINE L1 -1660 4486 2898 198 0 0 0 chr12 10144711 10144733 -134137756 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 25315 112 14 90 chr12 10144733 10147417 -134135072 - L1P LINE L1 -3248 2898 12 1759 170 50 0 chr12 10147429 10147712 -134134777 - AluJb SINE Alu -15 297 1 1292 148 24 77 chr12 10147722 10148017 -134134472 + MER67C LTR ERV1 40 343 -246 2050 28 0 8 chr12 10148028 10148278 -134134211 - L1PA2 LINE L1 0 6155 5908 710 263 34 14 chr12 10148296 10148505 -134133984 - MER34 LTR ERV1 -294 248 36 1482 44 59 39 chr12 10148752 10148955 -134133534 - AluY SINE Alu -104 207 1 2631 153 9 19 chr12 10149577 10150042 -134132447 - MER65C LTR ERV1 -1 460 1 275 152 0 0 chr12 10150051 10150097 -134132392 + MER67C LTR ERV1 356 401 -309 325 309 86 0 chr12 10150111 10150250 -134132239 + MER67D LTR ERV1 356 506 -8 286 257 157 14 chr12 10150278 10150418 -134132071 - L1MC4 LINE L1 -969 7073 6914 410 66 33 0 chr12 10150432 10150493 -134131996 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 540 252 50 64 chr12 10151031 10151249 -134131240 + MER20 DNA MER1_type 1 215 -4 193 377 44 26 chr12 10151964 10152078 -134130411 + MIR3 SINE MIR 53 168 -40 230 365 40 24 chr12 10154271 10154397 -134128092 - L2 LINE L2 -4 3268 3141 221 317 35 56 chr12 10154604 10154746 -134127743 - L3 LINE CR1 -294 1283 1145 340 257 69 20 chr12 10155467 10155568 -134126921 + MLT2E LTR ERVL 54 159 -469 281 239 0 11 chr12 10156048 10156140 -134126349 + (TA)n Simple_repeat Simple_repeat 2 92 0 413 264 74 63 chr12 10156491 10156775 -134125714 + L1ME3A LINE L1 2964 3250 -2896 1566 295 108 39 chr12 10156827 10159041 -134123448 + L1ME3A LINE L1 3389 5759 -411 999 211 84 39 chr12 10159081 10159389 -134123100 + MER58B DNA MER1_type 16 337 -4 288 270 18 36 chr12 10159404 10159515 -134122974 + L1ME3A LINE L1 5816 5924 -246 328 274 0 9 chr12 10159558 10159671 -134122818 + L1ME3A LINE L1 5912 6023 -147 4393 200 62 19 chr12 10159979 10160891 -134121598 + L1M3f LINE L1 1 952 -4376 671 341 21 39 chr12 10210903 10211034 -134071455 + L2 LINE L2 2838 2970 -343 2384 54 0 14 chr12 10211034 10211331 -134071158 - AluY SINE Alu -18 293 1 671 341 21 39 chr12 10211331 10211533 -134070956 + L2 LINE L2 2970 3165 -148 516 11 46 172 chr12 10211534 10211621 -134070868 - MADE1 DNA Mariner 0 80 5 310 267 68 48 chr12 10211662 10211808 -134070681 + L2 LINE L2 3156 3304 -9 5508 142 38 13 chr12 10212172 10213468 -134069021 - L1PB3 LINE L1 -1 6869 5540 2103 142 0 0 chr12 10215040 10215349 -134067140 - AluSx SINE Alu -1 311 3 7201 192 13 25 chr12 10215355 10216413 -134066076 - L1PB3 LINE L1 -1311 5551 4518 2150 147 0 0 chr12 10216413 10216713 -134065776 - AluSx SINE Alu -11 301 2 7201 192 13 25 chr12 10216713 10217221 -134065268 - L1PB3 LINE L1 -2344 4518 4005 242 259 12 25 chr12 10217325 10217406 -134065083 - MARNA DNA Mariner -58 528 449 25460 55 7 3 chr12 10217468 10221342 -134061147 - L1PA6 LINE L1 0 6154 2268 6110 199 68 24 chr12 10221342 10221700 -134060789 - L1PB3 LINE L1 -3815 3047 2706 2208 118 0 10 chr12 10221700 10221871 -134060618 - AluSg SINE Alu -8 302 134 2139 132 3 3 chr12 10221871 10222181 -134060308 - AluSq SINE Alu -3 310 1 2208 118 0 10 chr12 10222181 10222314 -134060175 - AluSg SINE Alu -176 134 1 6110 199 68 24 chr12 10222314 10225696 -134056793 - L1PB3 LINE L1 -4156 2706 78 2354 95 3 0 chr12 10225696 10226000 -134056489 - AluSx SINE Alu -7 305 1 6110 199 68 24 chr12 10226000 10226079 -134056410 - L1PB3 LINE L1 -6784 78 4 22 70 0 0 chr12 10226079 10226122 -134056367 + AT_rich Low_complexity Low_complexity 1 43 0 193 370 28 0 chr12 10226316 10226424 -134056065 - MIR3 SINE MIR -29 179 69 1067 224 76 59 chr12 10226431 10226788 -134055701 + MLT1A1 LTR MaLR 1 363 -2 245 271 28 75 chr12 10227945 10228052 -134054437 + MIR SINE MIR 41 142 -66 269 236 14 14 chr12 10228062 10228134 -134054355 - MIR SINE MIR -7 255 184 23 33 0 0 chr12 10229205 10229235 -134053254 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chr12 10231314 10231350 -134051139 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr12 10231448 10231472 -134051017 + AT_rich Low_complexity Low_complexity 1 24 0 2533 54 0 0 chr12 10232096 10232393 -134050096 - AluY SINE Alu -14 297 1 2242 101 0 10 chr12 10232604 10232902 -134049587 + AluSx SINE Alu 1 295 -17 2309 90 0 0 chr12 10233939 10234239 -134048250 + AluSx SINE Alu 1 300 -12 1143 103 0 0 chr12 10234239 10234394 -134048095 + AluSg/x SINE Alu 134 288 -24 948 100 14 14 chr12 10234605 10234745 -134047744 + AluSg/x SINE Alu 167 306 -4 1911 163 3 10 chr12 10234888 10235201 -134047288 + AluSx SINE Alu 2 312 0 2270 115 3 0 chr12 10235204 10235516 -134046973 + AluSq SINE Alu 1 313 0 1533 85 0 15 chr12 10236154 10236354 -134046135 + AluSc SINE Alu 1 197 -112 395 85 32 9 chr12 10236354 10236415 -134046074 + AluSc SINE Alu 236 297 -2 27 29 0 0 chr12 10237234 10237268 -134045221 + AT_rich Low_complexity Low_complexity 1 34 0 2319 108 0 0 chr12 10237447 10237752 -134044737 - AluSx SINE Alu -7 305 1 228 24 73 0 chr12 10237768 10237809 -134044680 + A-rich Low_complexity Low_complexity 2 45 0 379 299 68 14 chr12 10238276 10238423 -134044066 - MIR SINE MIR -76 186 32 312 247 106 0 chr12 10238970 10239055 -134043434 - MIR SINE MIR -95 167 74 2020 100 38 0 chr12 10239450 10239739 -134042750 - AluSg SINE Alu -10 300 1 521 320 20 10 chr12 10240581 10240781 -134041708 + MIR SINE MIR 57 258 -4 240 321 158 6 chr12 10241638 10241803 -134040686 + MIR SINE MIR 2 191 -71 318 193 0 48 chr12 10242182 10242265 -134040224 + L1MC5 LINE L1 7707 7785 -176 1656 146 61 17 chr12 10242456 10242751 -134039738 + AluSx SINE Alu 1 308 -4 1041 86 6 19 chr12 10242823 10242985 -134039504 - L1MB3 LINE L1 -18 6165 6006 2155 91 3 7 chr12 10243007 10243320 -134039169 - AluSq SINE Alu 0 312 1 880 199 51 74 chr12 10243365 10243676 -134038813 + MLT2D LTR ERVL 92 395 -19 1119 219 22 4 chr12 10243690 10243959 -134038530 - L1MB3 LINE L1 -172 6011 5738 524 162 153 28 chr12 10244029 10244175 -134038314 + MLT1E LTR MaLR 11 174 -419 891 212 37 49 chr12 10244265 10244510 -134037979 + MLT1E LTR MaLR 336 577 -16 870 132 0 0 chr12 10246222 10246351 -134036138 - AluSg/x SINE Alu -20 290 162 2021 134 7 10 chr12 10246988 10247295 -134035194 + AluSx SINE Alu 1 306 -6 1809 135 60 0 chr12 10247298 10247589 -134034900 + AluSx SINE Alu 5 311 0 308 323 71 32 chr12 10247712 10247867 -134034622 + MIR SINE MIR 59 219 -43 22 0 0 0 chr12 10248188 10248210 -134034279 + AT_rich Low_complexity Low_complexity 1 22 0 239 286 114 21 chr12 10248324 10248464 -134034025 + L2 LINE L2 3161 3313 0 2017 149 3 0 chr12 10248618 10248913 -134033576 + AluSx SINE Alu 1 296 -16 22 94 0 0 chr12 10249415 10249479 -134033010 + AT_rich Low_complexity Low_complexity 1 64 0 2194 128 3 0 chr12 10249708 10250012 -134032477 + AluSx SINE Alu 1 305 -7 622 339 45 4 chr12 10250497 10250739 -134031750 - MIR SINE MIR -3 259 8 454 250 160 6 chr12 10250786 10250942 -134031547 - MER58C DNA MER1_type 0 215 36 2442 285 60 15 chr12 10251349 10252433 -134030056 + L1MEc LINE L1 248 1380 -5227 255 184 0 48 chr12 10252449 10252519 -134029970 + GA-rich Low_complexity Low_complexity 1 73 -376 2368 69 23 3 chr12 10252519 10252822 -134029667 + AluY SINE Alu 1 309 -2 255 184 0 48 chr12 10252822 10252921 -134029568 + GA-rich Low_complexity Low_complexity 73 449 0 480 258 103 27 chr12 10253005 10253374 -134029115 + L1MEc LINE L1 1288 1684 -4742 2439 77 3 3 chr12 10253439 10253750 -134028739 + AluY SINE Alu 1 311 0 848 247 74 19 chr12 10253755 10254280 -134028209 + L1MEc LINE L1 2384 2896 -3530 1922 116 43 0 chr12 10254282 10254559 -134027930 + AluSq SINE Alu 1 289 -24 924 112 62 12 chr12 10254572 10254733 -134027756 + AluSg/x SINE Alu 133 301 -9 1585 231 64 6 chr12 10254780 10255296 -134027193 + L1MEc LINE L1 2935 3480 -2946 5884 181 12 23 chr12 10255312 10256203 -134026286 - L1PA16 LINE L1 -9 6157 5257 2393 110 0 0 chr12 10256203 10256512 -134025977 - AluSq SINE Alu -4 309 1 5884 181 12 23 chr12 10256512 10258014 -134024475 - L1PA16 LINE L1 -909 5257 3775 848 161 8 0 chr12 10258027 10258157 -134024332 - FLAM_C SINE Alu -12 131 1 724 174 128 0 chr12 10258157 10258329 -134024160 - L1 LINE L1 -2350 3796 3603 892 298 73 23 chr12 10258477 10258927 -134023562 + L2 LINE L2 2783 3251 -62 2338 99 0 6 chr12 10258984 10259297 -134023192 + AluSp SINE Alu 1 311 -2 1691 178 6 22 chr12 10260010 10260325 -134022164 - AluSx SINE Alu -2 310 1 206 233 55 14 chr12 10260331 10260404 -134022085 + (TTTA)n Simple_repeat Simple_repeat 4 79 0 1875 98 4 4 chr12 10260553 10260819 -134021670 - L1PB1 LINE L1 -1 6150 5885 2162 100 9 38 chr12 10260969 10261289 -134021200 - AluSp SINE Alu -2 311 1 2171 144 0 3 chr12 10261423 10261736 -134020753 - AluSq SINE Alu -1 312 1 336 206 112 9 chr12 10262195 10262302 -134020187 - MER39 LTR ERV1 0 707 590 806 181 197 24 chr12 10262304 10262553 -134019936 + MER39 LTR ERV1 415 706 -1 538 223 106 64 chr12 10262554 10262812 -134019677 - MER39 LTR ERV1 -223 484 8 1186 233 37 64 chr12 10263005 10263199 -134019290 + MER67B LTR ERV1 3 201 -479 2427 79 0 0 chr12 10263199 10263503 -134018986 + AluY SINE Alu 1 304 -7 1186 233 37 64 chr12 10263503 10263565 -134018924 + MER67B LTR ERV1 201 263 -417 2377 80 3 6 chr12 10263565 10263876 -134018613 + AluSp SINE Alu 1 310 -3 1186 233 37 64 chr12 10263876 10264130 -134018359 + MER67B LTR ERV1 263 398 -282 505 220 91 32 chr12 10264104 10264327 -134018162 + MER67A LTR ERV1 273 543 0 * 500 298 68 40 chr12 10264555 10264803 -134017686 + MIR SINE MIR 2 256 -6 2290 118 0 6 chr12 10265613 10265927 -134016562 + AluSx SINE Alu 1 312 0 482 235 92 46 chr12 10266820 10266973 -134015516 - MIR SINE MIR -23 239 80 360 0 0 0 chr12 10267283 10267323 -134015166 + (TG)n Simple_repeat Simple_repeat 2 41 0 1110 137 17 112 chr12 10267357 10267598 -134014891 - AluJo SINE Alu -94 218 1 662 301 15 50 chr12 10267806 10268068 -134014421 - MIR SINE MIR -2 260 8 194 250 0 0 chr12 10268395 10268447 -134014042 - L2 LINE L2 0 3313 3262 189 107 0 0 chr12 10268588 10268616 -134013873 + (T)n Simple_repeat Simple_repeat 1 28 0 2526 76 3 0 chr12 10270582 10270886 -134011603 - AluSq SINE Alu -8 305 1 2016 118 0 68 chr12 10271004 10271175 -134011314 - AluSx SINE Alu -10 302 162 2508 50 3 0 chr12 10271175 10271474 -134011015 - AluY SINE Alu -11 300 1 2016 118 0 68 chr12 10271474 10271624 -134010865 - AluSx SINE Alu -150 162 3 264 185 0 0 chr12 10271630 10271684 -134010805 + CT-rich Low_complexity Low_complexity 1 54 0 * 345 47 0 0 chr12 10271677 10271720 -134010769 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 1645 136 100 0 chr12 10271726 10272006 -134010483 - AluSx SINE Alu -4 308 1 2003 143 0 13 chr12 10272085 10272392 -134010097 - AluSx SINE Alu -9 303 1 1828 135 10 34 chr12 10272480 10272601 -134009888 + AluSg SINE Alu 3 125 -185 186 43 0 0 chr12 10272601 10272624 -134009865 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1828 135 10 34 chr12 10272624 10272798 -134009691 + AluSg SINE Alu 125 291 -19 2221 106 3 3 chr12 10272809 10273110 -134009379 + AluSg1 SINE Alu 1 301 -8 38 22 0 0 chr12 10273892 10273937 -134008552 + AT_rich Low_complexity Low_complexity 1 45 0 32 0 0 0 chr12 10274307 10274339 -134008150 + AT_rich Low_complexity Low_complexity 1 32 0 193 284 174 37 chr12 10274961 10275070 -134007419 + MIR SINE MIR 3 126 -136 470 265 43 16 chr12 10275235 10275379 -134007110 + MIR SINE MIR 68 212 -50 200 214 143 0 chr12 10275923 10275979 -134006510 + MIR SINE MIR 57 120 -142 201 211 0 0 chr12 10276674 10276726 -134005763 + GA-rich Low_complexity Low_complexity 1 52 0 285 98 0 0 chr12 10277019 10277060 -134005429 + (TTTTA)n Simple_repeat Simple_repeat 4 44 0 1513 149 0 131 chr12 10277065 10277393 -134005096 - AluJb SINE Alu -16 286 2 277 295 78 36 chr12 10277605 10277798 -134004691 - L2 LINE L2 0 3313 3113 24 53 0 0 chr12 10278285 10278323 -134004166 + AT_rich Low_complexity Low_complexity 1 38 0 303 314 81 8 chr12 10278328 10278452 -134004037 - L2 LINE L2 -14 3299 3167 193 337 145 40 chr12 10278561 10278810 -134003679 - L2 LINE L2 -353 2961 2687 1595 122 7 52 chr12 10279052 10279323 -134003166 + AluJb SINE Alu 1 259 -53 23 33 0 0 chr12 10280745 10280775 -134001714 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr12 10281737 10281760 -134000729 + AT_rich Low_complexity Low_complexity 1 23 0 14700 149 51 29 chr12 10281866 10282307 -134000182 - L1PBa LINE L1 -3646 3216 2786 423 0 0 0 chr12 10282307 10282354 -134000135 + (TG)n Simple_repeat Simple_repeat 2 48 0 14700 149 51 29 chr12 10282354 10282698 -133999791 - L1PBa LINE L1 -4076 2786 2451 2435 93 0 0 chr12 10282698 10283009 -133999480 - AluY SINE Alu 0 311 1 14700 149 51 29 chr12 10283009 10283129 -133999360 - L1PBa LINE L1 -4411 2451 2335 898 115 8 184 chr12 10283129 10283363 -133999126 - 7SK RNA RNA 0 193 1 14700 149 51 29 chr12 10283363 10283777 -133998712 - L1PBa LINE L1 -4527 2335 1932 2093 138 0 13 chr12 10283777 10284081 -133998408 + AluSx SINE Alu 1 300 -12 14700 149 51 29 chr12 10284081 10285915 -133996574 - L1PBa LINE L1 -4930 1932 2 217 313 9 71 chr12 10285951 10286063 -133996426 - MIR SINE MIR -157 105 1 968 219 71 6 chr12 10286431 10286769 -133995720 - L1 LINE L1 -2652 3494 3135 1221 128 0 0 chr12 10286772 10286944 -133995545 - AluSg/x SINE Alu 0 312 141 2200 121 0 3 chr12 10286951 10287248 -133995241 - AluSx SINE Alu -16 296 1 4261 230 50 26 chr12 10287252 10287766 -133994723 - L1PA12 LINE L1 -4002 3582 3082 2175 107 13 0 chr12 10287766 10288064 -133994425 - AluSq SINE Alu -11 302 1 4261 230 50 26 chr12 10288064 10288424 -133994065 - L1PA12 LINE L1 -4502 3082 2732 2031 126 0 7 chr12 10288424 10288737 -133993752 + AluSx SINE Alu 1 311 0 4261 230 50 26 chr12 10288737 10289166 -133993323 - L1PA12 LINE L1 -4852 2732 2244 403 305 91 85 chr12 10289590 10290108 -133992381 - L1PA12 LINE L1 -6130 1444 924 3948 240 85 43 chr12 10290157 10290423 -133992066 + L1ME1 LINE L1 3193 3447 -2719 2309 74 7 0 chr12 10290423 10290722 -133991767 + AluSg SINE Alu 1 301 -9 3948 240 85 43 chr12 10290722 10290931 -133991558 + L1ME1 LINE L1 3447 3646 -2520 2263 98 3 0 chr12 10290931 10291228 -133991261 + AluSx SINE Alu 1 298 -14 1539 186 0 40 chr12 10291233 10291534 -133990955 + AluJb SINE Alu 1 289 -23 3948 240 85 43 chr12 10291534 10292995 -133989494 + L1ME1 LINE L1 3649 5048 -1118 2170 102 24 3 chr12 10292995 10293288 -133989201 + AluSx SINE Alu 1 299 -13 3948 240 85 43 chr12 10293288 10293466 -133989023 + L1ME1 LINE L1 5048 5217 -949 2241 100 0 0 chr12 10293466 10293757 -133988732 + AluSq SINE Alu 2 292 -21 3948 240 85 43 chr12 10293757 10294485 -133988004 + L1ME1 LINE L1 5217 6161 -5 237 98 0 0 chr12 10295028 10295069 -133987420 + (TG)n Simple_repeat Simple_repeat 2 42 0 385 132 440 0 chr12 10296789 10296880 -133985609 - AluYb8 SINE Alu -177 131 1 283 234 109 0 chr12 10297245 10297309 -133985180 + MER33 DNA MER1_type 2 72 -252 847 129 0 0 chr12 10297332 10297448 -133985041 - FLAM_C SINE Alu -27 116 1 211 211 39 39 chr12 10297800 10297852 -133984637 - L2 LINE L2 -79 3234 3183 2085 153 113 8 chr12 10297888 10298279 -133984210 - MSTB1 LTR MaLR 0 432 1 375 302 9 0 chr12 10298279 10298385 -133984104 - MER81 DNA DNA -7 107 1 859 330 145 22 chr12 10298386 10299109 -133983380 - L2 LINE L2 -157 3156 2347 248 184 0 0 chr12 10299580 10299618 -133982871 - Alu SINE Alu -21 281 244 194 155 35 0 chr12 10299619 10299677 -133982812 + (TATATG)n Simple_repeat Simple_repeat 2 61 0 287 238 0 0 chr12 10300115 10300178 -133982311 - MER117 DNA MER1_type -91 106 44 195 378 25 17 chr12 10300210 10300329 -133982160 - MIR SINE MIR -6 256 137 180 0 0 0 chr12 10300494 10300514 -133981975 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 213 395 0 0 chr12 10301119 10301195 -133981294 + L2 LINE L2 3181 3256 -16 22 70 0 0 chr12 10302783 10302826 -133979663 + AT_rich Low_complexity Low_complexity 1 43 0 580 110 0 22 chr12 10302826 10302917 -133979572 + AluJb SINE Alu 192 280 -32 1612 201 0 3 chr12 10303906 10304195 -133978294 - AluJb SINE Alu -24 288 1 191 296 0 0 chr12 10304195 10304239 -133978250 - L2 LINE L2 -92 3180 3137 293 47 23 0 chr12 10304314 10304357 -133978132 + (GA)n Simple_repeat Simple_repeat 1 44 0 234 267 0 89 chr12 10304369 10304470 -133978019 - MIR SINE MIR -76 132 41 2335 166 39 12 chr12 10304603 10305018 -133977471 - MSTB LTR MaLR 0 426 1 229 347 66 0 chr12 10305085 10305206 -133977283 - MIR SINE MIR -37 225 97 192 280 103 19 chr12 10307327 10307434 -133975055 + MIR SINE MIR 91 206 -56 2202 162 10 12 chr12 10307551 10307952 -133974537 - MER57A LTR ERV1 0 403 4 219 231 0 19 chr12 10310094 10310146 -133972343 - L2 LINE L2 -8 3305 3255 379 246 87 14 chr12 10310482 10310620 -133971869 - MIR SINE MIR -6 256 109 29 0 0 0 chr12 10310975 10311004 -133971485 + AT_rich Low_complexity Low_complexity 1 29 0 2009 129 26 3 chr12 10312958 10313260 -133969229 - AluSq SINE Alu -4 309 1 264 208 31 31 chr12 10316221 10316317 -133966172 - L1MC4a LINE L1 -1884 5924 5829 * 4309 189 22 3 chr12 10316316 10317240 -133965249 - L1MD1 LINE L1 -114 6128 5188 639 130 148 0 chr12 10317245 10317353 -133965136 - AluJb SINE Alu -188 124 1 1042 261 54 39 chr12 10317361 10317843 -133964646 - L1MD1 LINE L1 -943 5203 4715 1735 130 30 47 chr12 10318149 10318450 -133964039 + AluSx SINE Alu 1 296 -16 487 325 35 43 chr12 10319170 10319515 -133962974 - L1ME4a LINE L1 -36 6085 5744 28 29 0 0 chr12 10319634 10319669 -133962820 + AT_rich Low_complexity Low_complexity 1 35 0 606 102 61 0 chr12 10320455 10320553 -133961936 - L1PA16 LINE L1 -9 6157 6054 227 208 19 19 chr12 10320714 10320767 -133961722 - L1ME4a LINE L1 -2143 5665 5613 2380 93 0 6 chr12 10320909 10321220 -133961269 - AluSx SINE Alu -3 309 1 25 0 0 0 chr12 10322127 10322152 -133960337 + AT_rich Low_complexity Low_complexity 1 25 0 1470 214 120 37 chr12 10323317 10323775 -133958714 + MLT1D LTR MaLR 1 496 -9 404 285 108 19 chr12 10324816 10324974 -133957515 - MLT1J2 LTR MaLR 0 450 279 468 231 26 0 chr12 10325391 10325508 -133956981 - LTR33 LTR ERVL -2 519 400 323 243 97 56 chr12 10325603 10325747 -133956742 - LTR33 LTR ERVL -369 152 3 26 0 0 0 chr12 10325747 10325773 -133956716 + AT_rich Low_complexity Low_complexity 1 26 0 2352 88 0 0 chr12 10325775 10326072 -133956417 - AluSq SINE Alu -16 297 1 251 279 39 29 chr12 10326435 10326539 -133955950 - MIR SINE MIR -11 251 147 12610 141 17 13 chr12 10326549 10328611 -133953878 + Tigger1 DNA MER2_type 1 2070 -348 617 94 31 3 chr12 10328611 10328739 -133953750 - AluSc SINE Alu -14 295 132 2789 7 0 3 chr12 10328739 10329044 -133953445 - AluYb8 SINE Alu -14 304 1 1975 157 16 30 chr12 10329044 10329407 -133953082 + Tigger1 DNA MER2_type 2061 2418 0 456 323 40 20 chr12 10329971 10330172 -133952317 - MIR SINE MIR 0 262 58 245 374 0 0 chr12 10330684 10330767 -133951722 - L2 LINE L2 -30 3242 3160 183 354 63 0 chr12 10330834 10330913 -133951576 - MIR SINE MIR -111 151 68 808 345 29 31 chr12 10332116 10332563 -133949926 - L2 LINE L2 -34 3279 2834 23 0 0 0 chr12 10332624 10332647 -133949842 + AT_rich Low_complexity Low_complexity 1 23 0 2020 115 4 0 chr12 10333016 10333294 -133949195 + AluSc SINE Alu 1 279 -30 204 40 0 0 chr12 10333304 10333329 -133949160 + (TA)n Simple_repeat Simple_repeat 2 26 0 252 0 0 0 chr12 10333353 10333381 -133949108 + (CA)n Simple_repeat Simple_repeat 2 29 0 459 263 102 44 chr12 10334287 10334492 -133947997 + L2 LINE L2 3096 3312 -1 2042 112 6 16 chr12 10335720 10336032 -133946457 - AluSx SINE Alu -3 309 1 2459 64 0 0 chr12 10336243 10336540 -133945949 + AluY SINE Alu 1 297 -14 1756 176 0 0 chr12 10336874 10337179 -133945310 + AluSx SINE Alu 5 309 0 4066 160 79 31 chr12 10339237 10340062 -133942427 + MER6 DNA MER2_type 2 865 0 193 103 0 0 chr12 10340067 10340096 -133942393 + L2 LINE L2 3285 3313 0 1536 181 36 23 chr12 10341089 10341393 -133941096 + AluJb SINE Alu 3 310 -2 4057 148 57 22 chr12 10341585 10342344 -133940145 + LTR1 LTR ERV1 1 785 0 453 291 33 4 chr12 10342764 10342925 -133939564 - MIR SINE MIR -68 140 2 1134 280 82 102 chr12 10343332 10344301 -133938188 - L2 LINE L2 -778 2536 1588 2462 65 0 3 chr12 10344301 10344608 -133937881 + AluY SINE Alu 1 306 -5 1134 280 82 102 chr12 10344608 10344664 -133937825 - L2 LINE L2 -1726 1588 1532 529 128 12 0 chr12 10344666 10344752 -133937737 - MER52C LTR ERV1 0 1278 1192 1397 170 8 0 chr12 10344753 10344994 -133937495 - L1MC/D LINE L1 -713 5631 5389 473 207 0 0 chr12 10345269 10345351 -133937138 - AluJ/FLAM SINE Alu -228 84 3 362 211 55 23 chr12 10346302 10346430 -133936059 + MER52C LTR ERV1 354 485 -793 1663 195 69 54 chr12 10346432 10346510 -133935979 + L1MC2 LINE L1 5580 5655 -689 3520 113 4 4 chr12 10346510 10347021 -133935468 - MER9 LTR ERVK 0 511 1 1663 195 69 54 chr12 10347021 10347389 -133935100 + L1MC2 LINE L1 5655 6033 -311 306 0 0 0 chr12 10347688 10347722 -133934767 + (TA)n Simple_repeat Simple_repeat 1 34 0 180 0 0 0 chr12 10347721 10347741 -133934748 + (CA)n Simple_repeat Simple_repeat 2 21 0 * 316 159 0 72 chr12 10347745 10347814 -133934675 - L1M3 LINE L1 -392 5776 5713 284 266 53 0 chr12 10348237 10348331 -133934158 - MIR SINE MIR -84 178 80 667 167 10 0 chr12 10349238 10349439 -133933050 + GA-rich Low_complexity Low_complexity 1 203 0 207 0 0 0 chr12 10349439 10349462 -133933027 + (CAGG)n Simple_repeat Simple_repeat 1 23 0 2591 87 52 0 chr12 10349901 10350247 -133932242 - THE1B LTR MaLR 0 364 1 3786 47 2 2 chr12 10350279 10350746 -133931743 - L1PA8 LINE L1 -7 6165 5699 905 185 0 17 chr12 10351155 10351333 -133931156 - L1MA10 LINE L1 -514 5786 5612 2459 182 26 28 chr12 10351333 10351874 -133930615 + L1MA10 LINE L1 5786 6327 -7 24 0 0 0 chr12 10352135 10352159 -133930330 + AT_rich Low_complexity Low_complexity 1 24 0 878 201 67 128 chr12 10353569 10353665 -133928824 + MLT1A1 LTR MaLR 1 101 -264 1693 183 0 32 chr12 10353665 10353977 -133928512 + AluJo SINE Alu 1 302 -10 878 201 67 128 chr12 10353977 10354269 -133928220 + MLT1A1 LTR MaLR 101 365 0 26 0 0 0 chr12 10354442 10354468 -133928021 + AT_rich Low_complexity Low_complexity 1 26 0 511 140 9 19 chr12 10354491 10354598 -133927891 + GA-rich Low_complexity Low_complexity 4 109 0 581 232 34 57 chr12 10355077 10355254 -133927235 + MER5B DNA MER1_type 5 177 -1 351 342 6 31 chr12 10355551 10355712 -133926777 - MER5B DNA MER1_type -17 161 5 2586 137 14 28 chr12 10355721 10356143 -133926346 - MSTA LTR MaLR -12 416 1 1799 155 7 7 chr12 10357526 10357816 -133924673 + AluJb SINE Alu 1 290 -22 28 0 0 0 chr12 10358656 10358684 -133923805 + AT_rich Low_complexity Low_complexity 1 28 0 1179 214 20 3 chr12 10360051 10360346 -133922143 + L1MA4 LINE L1 5995 6294 -6 27 62 0 0 chr12 10360376 10360424 -133922065 + AT_rich Low_complexity Low_complexity 1 48 0 380 219 73 0 chr12 10360458 10360581 -133921908 - Charlie2a DNA MER1_type -2 2860 2729 594 230 48 62 chr12 10360594 10360803 -133921686 - Charlie2a DNA MER1_type -1191 1671 1466 419 277 43 18 chr12 10360838 10360984 -133921505 + MIR SINE MIR 33 173 -63 237 278 14 14 chr12 10361069 10361141 -133921348 - Charlie2b DNA MER1_type -2112 670 599 27 96 0 0 chr12 10362619 10362702 -133919787 + AT_rich Low_complexity Low_complexity 1 83 0 183 236 42 56 chr12 10362931 10363003 -133919486 + MER5A DNA MER1_type 119 189 0 1273 51 0 0 chr12 10364423 10364580 -133917909 + L1PA3 LINE L1 5996 6152 -3 367 299 28 9 chr12 10365394 10365521 -133916968 + MIR SINE MIR 23 157 -62 297 0 0 0 chr12 10366746 10366779 -133915710 + (TG)n Simple_repeat Simple_repeat 1 33 0 324 64 0 0 chr12 10366779 10366826 -133915663 + (GA)n Simple_repeat Simple_repeat 2 48 0 273 192 0 0 chr12 10367009 10367061 -133915428 + MLT1D LTR MaLR 454 505 0 803 149 242 173 chr12 10367636 10368086 -133914403 - LTR12 LTR ERV1 -233 481 1 491 313 81 26 chr12 10368361 10368633 -133913856 + L2 LINE L2 507 793 -2521 182 61 0 30 chr12 10368712 10368745 -133913744 + (TTAAA)n Simple_repeat Simple_repeat 1 32 0 567 212 23 15 chr12 10368746 10368878 -133913611 - MER3 DNA MER1_type -76 133 1 2139 310 83 66 chr12 10368889 10369896 -133912593 + L2 LINE L2 806 1857 -1457 2525 68 0 0 chr12 10369896 10370207 -133912282 - AluY SINE Alu 0 311 1 2139 310 83 66 chr12 10370207 10370900 -133911589 + L2 LINE L2 1857 2536 -778 373 297 34 0 chr12 10371312 10371430 -133911059 + MIR SINE MIR 18 139 -123 253 292 72 77 chr12 10371652 10371861 -133910628 + L2 LINE L2 3104 3311 -2 4229 166 41 43 chr12 10371982 10372033 -133910456 + LTR1B LTR ERV1 1 51 -775 1353 65 0 0 chr12 10372033 10372203 -133910286 + L1PA5 LINE L1 5973 6142 -12 4229 166 41 43 chr12 10372203 10372979 -133909510 + LTR1B LTR ERV1 51 826 0 1839 168 7 7 chr12 10373044 10373348 -133909141 - AluJb SINE Alu -7 305 2 2639 33 0 0 chr12 10374240 10374540 -133907949 + AluY SINE Alu 2 301 -10 2408 60 0 7 chr12 10374800 10375099 -133907390 + AluY SINE Alu 1 297 -14 351 0 0 0 chr12 10378302 10378341 -133904148 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 404 314 40 40 chr12 10381003 10381229 -133901260 - L2 LINE L2 0 3313 3088 306 206 0 0 chr12 10382110 10382183 -133900306 + (TG)n Simple_repeat Simple_repeat 2 74 0 23 54 0 0 chr12 10382555 10382592 -133899897 + AT_rich Low_complexity Low_complexity 1 37 0 623 341 57 43 chr12 10382665 10383102 -133899387 + L2 LINE L2 2837 3279 -34 226 291 23 12 chr12 10384297 10384383 -133898106 + MIR SINE MIR 68 154 -108 298 297 159 33 chr12 10385103 10385285 -133897204 + MIR SINE MIR 58 262 0 213 374 87 0 chr12 10385705 10385820 -133896669 + MIR SINE MIR 2 126 -136 10747 146 25 3 chr12 10385832 10387611 -133894878 - Tigger1 DNA MER2_type 0 2418 602 7593 27 3 0 chr12 10387611 10388753 -133893736 - L1PA4 LINE L1 0 6155 5012 839 132 15 8 chr12 10388746 10388882 -133893607 - THE1C LTR MaLR -238 137 1 803 78 9 0 chr12 10388883 10388999 -133893490 - THE1C-int LTR MaLR -1 1579 1463 1383 119 0 0 chr12 10388999 10389192 -133893297 + AluSq SINE Alu 121 313 0 185 59 59 0 chr12 10389217 10389251 -133893238 + A-rich Low_complexity Low_complexity 2 37 0 8269 135 50 24 chr12 10389251 10390168 -133892321 + MER4B-int LTR ERV1 4549 5440 -1318 2115 134 0 0 chr12 10390168 10390459 -133892030 - AluSx SINE Alu -21 291 1 8269 135 50 24 chr12 10390459 10391663 -133890826 + MER4B-int LTR ERV1 5440 6758 0 807 157 448 20 chr12 10391664 10392021 -133890468 + MER4B LTR ERV1 2 511 -99 23 0 0 0 chr12 10392648 10392671 -133889818 + AT_rich Low_complexity Low_complexity 1 23 0 194 150 25 0 chr12 10392854 10392894 -133889595 + (CATA)n Simple_repeat Simple_repeat 2 42 0 3105 163 25 33 chr12 10393728 10394335 -133888154 + L1PB4 LINE L1 5545 6146 -10 966 138 12 31 chr12 10396514 10396674 -133885815 - AluSg/x SINE Alu 0 310 154 201 74 0 0 chr12 10398076 10398103 -133884386 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 234 191 0 44 chr12 10399036 10399104 -133883385 + (TTTA)n Simple_repeat Simple_repeat 3 67 0 409 335 19 12 chr12 10399110 10399271 -133883218 - L2 LINE L2 -1 3312 3151 446 259 53 103 chr12 10399850 10399900 -133882589 + MIR SINE MIR 2 53 -209 2338 116 30 25 chr12 10399900 10400262 -133882227 - THE1B LTR MaLR 0 364 1 10948 104 27 1 chr12 10400262 10401803 -133880686 - THE1B-int LTR MaLR 0 1580 1 2378 132 28 8 chr12 10401803 10402160 -133880329 - THE1B LTR MaLR 0 364 1 446 259 53 103 chr12 10402160 10402370 -133880119 + MIR SINE MIR 50 251 -11 1242 312 70 36 chr12 10402396 10403304 -133879185 - L2 LINE L2 -901 2413 1475 335 302 147 70 chr12 10403398 10403475 -133879014 - L2 LINE L2 -2119 1195 1125 1291 207 50 47 chr12 10403475 10403802 -133878687 - AluJo SINE Alu 0 312 1 335 302 147 70 chr12 10403802 10404098 -133878391 - L2 LINE L2 -2189 1125 793 266 75 0 0 chr12 10406042 10406082 -133876407 - MADE1 DNA Mariner -1 79 40 323 83 150 0 chr12 10406082 10406142 -133876347 - MADE1 DNA Mariner -10 70 2 21 36 0 0 chr12 10406567 10406595 -133875894 + AT_rich Low_complexity Low_complexity 1 28 0 329 265 106 45 chr12 10406623 10406887 -133875602 + L1 LINE L1 4361 4640 -1506 516 238 79 58 chr12 10406967 10407156 -133875333 - MIR SINE MIR -46 216 24 495 111 0 12 chr12 10407565 10407581 -133874908 + L1M1 LINE L1 5664 5679 -621 3016 147 16 0 chr12 10407581 10408093 -133874396 - L1MA4 LINE L1 -4 6296 5777 495 111 0 12 chr12 10408093 10408157 -133874332 + L1M1 LINE L1 5679 5743 -557 2565 95 71 9 chr12 10408286 10408706 -133873783 + LTR7 LTR ERV1 3 448 -2 14072 114 24 27 chr12 10408708 10411591 -133870898 + HERVH LTR ERV1 1 2995 -4718 859 147 7 0 chr12 10411570 10411720 -133870769 + HERVH LTR ERV1 3140 3290 -4423 * 3028 135 0 6 chr12 10411710 10412215 -133870274 + HERVH LTR ERV1 3492 3993 -3720 1065 131 23 0 chr12 10412217 10412393 -133870096 + HERVH LTR ERV1 4488 4667 -3046 * 4014 81 10 0 chr12 10412389 10412995 -133869494 + HERVH LTR ERV1 5769 6380 -1333 * 7640 100 21 4 chr12 10412968 10414134 -133868355 + HERVH LTR ERV1 6529 7713 0 2547 98 106 5 chr12 10414134 10414541 -133867948 + LTR7 LTR ERV1 1 448 -2 368 308 82 0 chr12 10414727 10414935 -133867554 - LTR33 LTR ERVL -24 497 273 276 239 60 0 chr12 10415507 10415574 -133866915 - LOR1a LTR ERV1 -145 352 282 1531 135 239 16 chr12 10415590 10416057 -133866432 + MER4E LTR ERV1 1 764 -15 907 194 79 52 chr12 10416072 10416324 -133866165 - LOR1b LTR ERV1 -202 259 1 5346 163 37 11 chr12 10416324 10417498 -133864991 - LOR1b-int LTR ERV1 0 8120 6979 2316 97 0 3 chr12 10417498 10417808 -133864681 - AluSq SINE Alu -4 309 1 5346 163 37 11 chr12 10417808 10417827 -133864662 - LOR1b-int LTR ERV1 -1141 6979 6962 4660 95 12 1 chr12 10417827 10418480 -133864009 - PABL_A LTR ERV1 0 660 1 5346 163 37 11 chr12 10418480 10419078 -133863411 - LOR1b-int LTR ERV1 -1158 6962 6211 685 91 0 10 chr12 10419078 10419177 -133863312 + MER4A LTR ERV1 1 98 -566 * 1164 87 0 186 chr12 10419174 10419449 -133863040 + MER4A LTR ERV1 200 423 -241 2371 105 0 0 chr12 10419455 10419759 -133862730 - AluSx SINE Alu 0 312 9 787 134 165 12 chr12 10419783 10419947 -133862542 + MER4C LTR ERV1 277 465 0 2838 155 13 38 chr12 10419949 10420498 -133861991 - LOR1b-int LTR ERV1 -1908 6212 5678 1647 105 22 4 chr12 10420511 10420778 -133861711 + MER4-int LTR ERV1 1586 1857 -6263 1020 177 54 40 chr12 10420791 10421344 -133861145 + MER4-int LTR ERV1 2348 4007 -2591 4363 122 58 6 chr12 10421345 10421586 -133860903 - LOR1b-int LTR ERV1 -6573 1547 1320 2315 91 0 10 chr12 10421586 10421893 -133860596 + AluY SINE Alu 1 304 -7 4363 122 58 6 chr12 10421893 10422469 -133860020 - LOR1b-int LTR ERV1 -6800 1320 688 1756 122 20 4 chr12 10422470 10422717 -133859772 - AluJb SINE Alu -19 293 43 6426 68 15 47 chr12 10422747 10423732 -133858757 - SVA Other Other 0 1386 433 716 78 13 78 chr12 10423745 10424713 -133857776 - SVA Other Other -592 794 661 774 31 0 0 chr12 10424713 10424810 -133857679 + (GGGAGA)n Simple_repeat Simple_repeat 1 97 0 716 78 13 78 chr12 10424810 10424821 -133857668 - SVA Other Other -725 661 651 872 158 79 0 chr12 10424851 10425015 -133857474 - LOR1b-int LTR ERV1 -7420 700 524 240 174 43 0 chr12 10425047 10425093 -133857396 - 5S rRNA rRNA -72 49 2 1353 152 46 0 chr12 10425170 10425407 -133857082 - LOR1b-int LTR ERV1 -7670 450 203 * 1954 193 42 2 chr12 10425374 10425779 -133856710 - LOR1b-int LTR ERV1 -7699 421 1 1077 189 15 5 chr12 10425779 10425985 -133856504 - LOR1b LTR ERV1 0 461 254 327 210 70 14 chr12 10426011 10426154 -133856335 - MER53 DNA DNA -33 156 6 721 160 28 0 chr12 10426532 10426676 -133855813 - L1MB3 LINE L1 -312 5871 5724 3912 198 21 19 chr12 10427966 10429002 -133853487 - L1MB2 LINE L1 -7 6164 5131 336 24 0 0 chr12 10429059 10429100 -133853389 + (CA)n Simple_repeat Simple_repeat 1 41 0 2103 115 0 3 chr12 10429122 10429409 -133853080 + AluSg SINE Alu 1 286 -24 342 257 0 0 chr12 10429631 10429701 -133852788 + MER21B LTR ERV1 20 89 -774 2218 236 89 23 chr12 10429704 10430365 -133852124 + MER21B LTR ERV1 43 747 -116 3277 120 2 25 chr12 10430365 10430889 -133851600 - MER1A DNA MER1_type 0 529 18 302 158 0 0 chr12 10430888 10430945 -133851544 - MER1A DNA MER1_type -470 57 1 * 228 321 57 21 chr12 10431110 10431250 -133851239 + MLT1L LTR MaLR 145 289 -326 * 635 267 131 5 chr12 10431247 10431453 -133851036 + MLT1C LTR MaLR 220 451 -16 319 237 8 8 chr12 10431508 10431626 -133850863 + (TA)n Simple_repeat Simple_repeat 2 122 -10 1980 96 0 4 chr12 10431626 10431886 -133850603 - AluSq SINE Alu -54 259 1 319 237 8 8 chr12 10431886 10431898 -133850591 + (TA)n Simple_repeat Simple_repeat 121 132 0 2810 231 59 55 chr12 10431939 10433010 -133849479 + Tigger6a DNA MER2_type 9 1083 0 26 50 0 0 chr12 10434462 10434502 -133847987 + AT_rich Low_complexity Low_complexity 1 40 0 193 384 78 68 chr12 10434632 10434913 -133847576 - L2 LINE L2 -2 3270 2987 1526 290 104 37 chr12 10434993 10435745 -133846744 + L2 LINE L2 1259 2060 -1254 284 318 55 9 chr12 10435820 10435930 -133846559 + L2 LINE L2 3199 3313 0 749 317 132 29 chr12 10437051 10437714 -133844775 - L2 LINE L2 -21 3292 2554 1580 170 70 55 chr12 10438867 10439250 -133843239 - MLT1B LTR MaLR 0 390 2 2336 62 0 13 chr12 10440630 10440937 -133841552 + AluY SINE Alu 1 303 -8 947 270 90 48 chr12 10441453 10442083 -133840406 + L2 LINE L2 2653 3307 -6 2240 104 7 0 chr12 10442282 10442580 -133839909 + AluSp SINE Alu 1 300 -13 279 0 0 0 chr12 10442682 10442713 -133839776 + (CA)n Simple_repeat Simple_repeat 1 31 0 2490 67 0 0 chr12 10443313 10443612 -133838877 - AluY SINE Alu -12 299 1 1370 219 89 37 chr12 10443612 10443950 -133838539 + L1ME1 LINE L1 5574 5946 -220 1854 168 10 0 chr12 10443950 10444242 -133838247 + AluJb SINE Alu 1 295 -17 1370 219 89 37 chr12 10444242 10444388 -133838101 + L1ME1 LINE L1 5946 6083 -83 409 369 79 0 chr12 10445375 10445616 -133836873 - L3 LINE CR1 -15 1562 1303 464 301 119 60 chr12 10445916 10446459 -133836030 + L1M4 LINE L1 1026 1713 -4713 21 0 0 0 chr12 10446530 10446551 -133835938 + AT_rich Low_complexity Low_complexity 1 21 0 1282 195 91 75 chr12 10446574 10446958 -133835531 + MLT1B LTR MaLR 1 390 0 26 50 0 0 chr12 10447032 10447072 -133835417 + AT_rich Low_complexity Low_complexity 1 40 0 245 306 68 48 chr12 10447202 10447866 -133834623 + L1M4 LINE L1 3947 4623 -1803 914 264 32 42 chr12 10447998 10448444 -133834045 - L1ME LINE L1 -573 5591 5157 2163 125 6 3 chr12 10448444 10448755 -133833734 - AluSx SINE Alu 0 312 1 914 264 32 42 chr12 10448755 10448931 -133833558 - L1ME LINE L1 -1007 5157 4981 296 216 0 11 chr12 10449385 10449473 -133833016 + (TA)n Simple_repeat Simple_repeat 2 88 0 1609 153 38 107 chr12 10449510 10449883 -133832606 + Tigger3(Golem) DNA MER2_type 2 3029 0 240 86 0 0 chr12 10449884 10449919 -133832570 + (CA)n Simple_repeat Simple_repeat 2 36 0 496 146 0 0 chr12 10450965 10451047 -133831442 - LOR1b LTR ERV1 0 461 380 1286 166 42 12 chr12 10451047 10451306 -133831183 - LOR1a LTR ERV1 -212 285 19 211 319 113 7 chr12 10451384 10451525 -133830964 - MIR SINE MIR -73 189 34 2742 186 13 2 chr12 10451657 10452188 -133830301 - MER34 LTR ERV1 -5 537 1 297 51 0 0 chr12 10452460 10452499 -133829990 + (GGTTG)n Simple_repeat Simple_repeat 2 40 0 860 97 14 0 chr12 10452655 10452795 -133829694 + L1PA8 LINE L1 5328 5476 -678 7057 42 29 0 chr12 10452810 10453771 -133828718 - L1PA5 LINE L1 -2 6152 5226 936 106 0 0 chr12 10453771 10453909 -133828580 + L1PA8 LINE L1 6028 6168 -4 180 0 0 0 chr12 10453997 10454017 -133828472 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2420 133 13 65 chr12 10454956 10455310 -133827179 + Tigger2a DNA MER2_type 1 327 -2381 1744 165 21 4 chr12 10455310 10455618 -133826871 - AluJo SINE Alu 0 312 11 2420 133 13 65 chr12 10455618 10455721 -133826768 + Tigger2a DNA MER2_type 327 434 0 764 256 31 9 chr12 10455731 10455958 -133826531 - MIR SINE MIR -30 232 1 8735 156 15 2 chr12 10456226 10458248 -133824241 + L1PA13 LINE L1 1 2583 -4998 3851 151 19 7 chr12 10458260 10459293 -133823196 + L1PA13 LINE L1 6017 7055 -544 793 134 0 0 chr12 10459592 10459726 -133822763 + L1PA13 LINE L1 7468 7601 0 187 30 30 30 chr12 10460458 10460491 -133821998 + (TTTTTA)n Simple_repeat Simple_repeat 5 37 0 21 0 0 0 chr12 10460706 10460727 -133821762 + AT_rich Low_complexity Low_complexity 1 21 0 198 141 31 16 chr12 10460840 10460904 -133821585 + (TTTA)n Simple_repeat Simple_repeat 2 66 0 6123 104 17 3 chr12 10461064 10462705 -133819784 - L1PA8 LINE L1 -8 6164 4511 357 149 0 0 chr12 10462917 10462984 -133819505 + (GGAA)n Simple_repeat Simple_repeat 4 70 0 1142 193 13 17 chr12 10463474 10463713 -133818776 - MLT1A1 LTR MaLR -127 238 1 1281 192 93 31 chr12 10464073 10464396 -133818093 + MER61A LTR ERV1 1 343 0 2759 199 52 13 chr12 10464397 10465077 -133817412 + MER61A-int LTR ERV1 2 707 -4510 2313 90 41 6 chr12 10465161 10465526 -133816963 + MER61A-int LTR ERV1 1411 1788 -3429 1250 173 171 72 chr12 10465528 10466026 -133816463 + LTR10B LTR ERV1 1 547 0 1002 212 89 27 chr12 10466030 10466323 -133816166 + LTR10B-int LTR ERV1 8 318 -6331 31594 219 15 27 chr12 10466346 10473739 -133808750 + LTR10B-int LTR ERV1 454 7754 -31 364 209 75 18 chr12 10473775 10473925 -133808564 + LTR10B LTR ERV1 1 251 -296 * 1180 215 41 15 chr12 10473900 10474279 -133808210 + LTR10B LTR ERV1 121 542 -5 353 143 0 0 chr12 10474305 10474368 -133808121 - LTR30 LTR ERV1 -108 614 552 2146 135 3 0 chr12 10474408 10474705 -133807784 + AluSx SINE Alu 1 298 -14 19239 96 11 10 chr12 10474708 10477610 -133804879 + MER61C-int LTR ERV1 1803 4707 -510 338 118 0 0 chr12 10477600 10477651 -133804838 + MER61C-int LTR ERV1 4657 4707 -510 * 2309 114 13 10 chr12 10477641 10478163 -133804326 + MER61C-int LTR ERV1 4657 5217 0 1892 170 121 7 chr12 10478338 10478750 -133803739 - LOR1b LTR ERV1 -2 459 1 2507 132 37 30 chr12 10479077 10479508 -133802981 + MER61C LTR ERV1 1 434 0 1358 200 40 45 chr12 10479589 10479779 -133802710 + L1MA10 LINE L1 5936 6125 -209 2467 93 0 0 chr12 10479779 10480080 -133802409 + AluSx SINE Alu 1 301 -11 1358 200 40 45 chr12 10480080 10480289 -133802200 + L1MA10 LINE L1 6125 6333 -1 819 182 0 0 chr12 10480515 10480663 -133801826 - L1PB4 LINE L1 -3 6153 6006 26 50 0 0 chr12 10480837 10480877 -133801612 + AT_rich Low_complexity Low_complexity 1 40 0 387 347 101 10 chr12 10481397 10481694 -133800795 + L2 LINE L2 2377 2700 -614 33 25 0 0 chr12 10482066 10482106 -133800383 + AT_rich Low_complexity Low_complexity 1 40 0 1775 174 10 7 chr12 10482457 10482767 -133799722 + AluJb SINE Alu 1 311 -1 541 199 15 0 chr12 10482777 10482908 -133799581 + GA-rich Low_complexity Low_complexity 2 134 0 366 287 15 15 chr12 10483199 10483335 -133799154 + A-rich Low_complexity Low_complexity 3 138 0 24 32 0 0 chr12 10483590 10483621 -133798868 + AT_rich Low_complexity Low_complexity 1 31 0 2552 63 3 0 chr12 10484053 10484356 -133798133 + AluSp SINE Alu 1 304 -9 22 56 0 0 chr12 10485060 10485096 -133797393 + AT_rich Low_complexity Low_complexity 1 36 0 180 318 30 0 chr12 10485694 10485760 -133796729 - MIR SINE MIR 0 262 195 696 265 62 54 chr12 10485784 10486057 -133796432 + L1MC5 LINE L1 7380 7660 -301 1567 230 57 70 chr12 10486057 10486719 -133795770 + MLT1E1 LTR MaLR 1 654 0 696 265 62 54 chr12 10486719 10486965 -133795524 + L1MC5 LINE L1 7660 7903 -58 25 31 0 0 chr12 10486968 10487000 -133795489 + AT_rich Low_complexity Low_complexity 1 32 0 606 333 6 0 chr12 10487000 10487171 -133795318 - MIR SINE MIR -89 173 2 228 133 0 0 chr12 10487235 10487280 -133795209 - LTR66 LTR ERVL -172 438 394 1698 211 28 6 chr12 10487301 10487662 -133794827 - MLT2D LTR ERVL -45 369 1 2352 96 0 6 chr12 10488414 10488727 -133793762 - AluY SINE Alu 0 311 1 1880 151 3 13 chr12 10488818 10489165 -133793324 - AluJb SINE Alu 0 344 1 593 281 51 101 chr12 10489458 10489932 -133792557 - HAL1 LINE L1 -919 1588 1139 186 133 0 0 chr12 10490142 10490172 -133792317 + (T)n Simple_repeat Simple_repeat 1 30 0 21 36 0 0 chr12 10491582 10491610 -133790879 + AT_rich Low_complexity Low_complexity 1 28 0 36 0 0 0 chr12 10491753 10491789 -133790700 + AT_rich Low_complexity Low_complexity 1 36 0 363 167 83 6 chr12 10492260 10492416 -133790073 + (TA)n Simple_repeat Simple_repeat 2 169 0 187 261 0 0 chr12 10492476 10492522 -133789967 - L2 LINE L2 -12 3301 3256 2275 97 0 10 chr12 10494139 10494437 -133788052 - AluSx SINE Alu -17 295 1 224 174 22 0 chr12 10494888 10494951 -133787538 + (TA)n Simple_repeat Simple_repeat 1 64 0 812 247 13 34 chr12 10495975 10496210 -133786279 + MLT2D LTR ERVL 1 230 -184 2088 104 13 13 chr12 10496315 10496613 -133785876 + AluSx SINE Alu 14 311 -1 3689 203 67 16 chr12 10498399 10499162 -133783327 + MER21B LTR ERV1 1 802 -61 1214 86 0 0 chr12 10499420 10499571 -133782918 - AluSg SINE Alu -159 151 1 242 267 76 0 chr12 10500491 10500596 -133781893 - MIR SINE MIR -113 149 37 25 0 0 0 chr12 10500940 10500965 -133781524 + AT_rich Low_complexity Low_complexity 1 25 0 1689 91 0 14 chr12 10501271 10501490 -133780999 + AluSg/x SINE Alu 85 300 -12 278 191 0 15 chr12 10501590 10501658 -133780831 + GA-rich Low_complexity Low_complexity 2 68 0 261 241 0 38 chr12 10503276 10503355 -133779134 + T-rich Low_complexity Low_complexity 2 77 0 189 0 0 0 chr12 10503747 10503768 -133778721 + (TTG)n Simple_repeat Simple_repeat 1 21 0 29 86 0 0 chr12 10503846 10503881 -133778608 + AT_rich Low_complexity Low_complexity 1 35 0 229 349 41 41 chr12 10504151 10504320 -133778169 + MIR3 SINE MIR 19 187 -21 2797 16 0 0 chr12 10504593 10504898 -133777591 - AluYb8 SINE Alu -13 305 1 186 43 0 0 chr12 10504960 10504983 -133777506 + (TC)n Simple_repeat Simple_repeat 2 24 0 212 277 11 43 chr12 10505241 10505335 -133777154 + GA-rich Low_complexity Low_complexity 1 91 0 489 270 78 65 chr12 10505434 10505587 -133776902 + MIR SINE MIR 2 160 -102 2149 102 25 35 chr12 10505587 10505901 -133776588 + AluSx SINE Alu 1 311 -1 489 270 78 65 chr12 10505901 10505977 -133776512 + MIR SINE MIR 160 234 -28 232 302 95 56 chr12 10506635 10506814 -133775675 - MER5A DNA MER1_type -3 186 1 1883 152 0 48 chr12 10507176 10507492 -133774997 - AluSx SINE Alu -10 302 2 401 244 67 0 chr12 10507566 10507656 -133774833 + FLAM_A SINE Alu 25 120 -22 1780 149 16 16 chr12 10507671 10507979 -133774510 - AluSx SINE Alu -2 310 3 1813 138 76 3 chr12 10509254 10509543 -133772946 - AluJb SINE Alu -2 310 1 2342 89 3 3 chr12 10509911 10510215 -133772274 - AluSp SINE Alu -9 304 1 319 189 40 0 chr12 10510595 10510669 -133771820 + L1MB5 LINE L1 6098 6174 0 609 149 19 9 chr12 10510928 10511035 -133771454 + L1PA11 LINE L1 6059 6166 -8 1318 102 0 0 chr12 10511992 10512159 -133770330 - AluSq SINE Alu -146 167 1 1091 135 49 0 chr12 10512534 10512697 -133769792 - AluJb SINE Alu -13 299 129 3336 73 106 14 chr12 10512697 10513187 -133769302 - LTR14B LTR ERVK 0 608 74 1465 139 0 5 chr12 10513187 10513395 -133769094 - AluSq SINE Alu -106 207 1 28 0 0 0 chr12 10513849 10513877 -133768612 + AT_rich Low_complexity Low_complexity 1 28 0 360 268 65 69 chr12 10513878 10514140 -133768349 + L1MDa LINE L1 2209 2494 -4116 225 291 23 12 chr12 10514145 10514231 -133768258 + L1MDa LINE L1 2822 2908 -3632 707 234 18 0 chr12 10514314 10514485 -133768004 + L1MDa LINE L1 3176 3349 -3191 1707 77 9 5 chr12 10514600 10514822 -133767667 + AluY SINE Alu 66 288 -23 367 194 0 0 chr12 10514968 10515035 -133767454 + MIR SINE MIR 173 239 -23 21 0 0 0 chr12 10515048 10515069 -133767420 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 10515142 10515163 -133767326 + (CA)n Simple_repeat Simple_repeat 2 22 0 1880 160 3 0 chr12 10515284 10515571 -133766918 - AluJo SINE Alu -24 288 1 1435 66 0 0 chr12 10516254 10516437 -133766052 + LTR14B LTR ERVK 426 608 0 1211 146 0 0 chr12 10516437 10516615 -133765874 + AluJb SINE Alu 129 306 -6 207 461 0 0 chr12 10516682 10516734 -133765755 + T-rich Low_complexity Low_complexity 1 52 0 314 248 0 0 chr12 10516755 10516856 -133765633 + G-rich Low_complexity Low_complexity 1 101 0 21 0 0 0 chr12 10517410 10517431 -133765058 + GC_rich Low_complexity Low_complexity 1 21 0 238 171 105 53 chr12 10517578 10517654 -133764835 - L1PBa LINE L1 -4487 2376 2297 27 0 0 0 chr12 10518449 10518476 -133764013 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr12 10518797 10518819 -133763670 + GC_rich Low_complexity Low_complexity 1 22 0 713 170 0 85 chr12 10518999 10519222 -133763267 - AluSg1 SINE Alu -104 205 2 276 248 80 58 chr12 10519245 10519337 -133763152 - MIR SINE MIR -72 190 93 2206 92 14 7 chr12 10519337 10519629 -133762860 + AluSg SINE Alu 1 294 -16 276 248 80 58 chr12 10519629 10519673 -133762816 - MIR SINE MIR -169 93 51 2109 121 26 3 chr12 10519859 10520164 -133762325 + AluSx SINE Alu 1 312 0 1001 115 0 61 chr12 10520178 10520343 -133762146 + AluJb SINE Alu 1 155 -157 306 352 8 16 chr12 10520438 10520563 -133761926 - L1MEc LINE L1 -4761 1635 1512 258 277 40 76 chr12 10520608 10521030 -133761459 - L1MEc LINE L1 -4920 1285 879 291 71 0 0 chr12 10522735 10522777 -133759712 + (TA)n Simple_repeat Simple_repeat 2 43 0 14496 172 44 37 chr12 10522779 10523026 -133759463 - L1PBa LINE L1 -2154 4708 4464 2177 114 3 0 chr12 10523026 10523325 -133759164 - AluSx SINE Alu -12 300 1 14496 172 44 37 chr12 10523325 10525008 -133757481 - L1PBa LINE L1 -2398 4464 2794 423 0 0 0 chr12 10525008 10525055 -133757434 + (TG)n Simple_repeat Simple_repeat 2 48 0 14496 172 44 37 chr12 10525055 10525409 -133757080 - L1PBa LINE L1 -4068 2794 2444 1962 122 3 13 chr12 10525409 10525721 -133756768 - AluY SINE Alu -2 309 1 14496 172 44 37 chr12 10525721 10525841 -133756648 - L1PBa LINE L1 -4418 2444 2326 911 119 8 191 chr12 10525841 10526077 -133756412 - 7SK RNA RNA 0 193 1 14496 172 44 37 chr12 10526077 10526492 -133755997 - L1PBa LINE L1 -4536 2326 1915 1812 128 6 45 chr12 10526492 10526804 -133755685 + AluSx SINE Alu 1 300 -12 14496 172 44 37 chr12 10526804 10528661 -133753828 - L1PBa LINE L1 -4947 1915 2 200 313 9 71 chr12 10528697 10528809 -133753680 - MIR SINE MIR -157 105 1 1587 146 0 72 chr12 10529963 10530284 -133752205 - AluSx SINE Alu -10 302 5 401 244 67 0 chr12 10530361 10530451 -133752038 + FLAM_A SINE Alu 25 120 -22 24 0 0 29 chr12 10530451 10530466 -133752023 + AT_rich Low_complexity Low_complexity 1 15 -19 1841 142 16 19 chr12 10530466 10530777 -133751712 - AluSx SINE Alu -2 310 1 24 0 0 29 chr12 10530777 10530796 -133751693 + AT_rich Low_complexity Low_complexity 15 34 0 211 211 39 39 chr12 10531133 10531185 -133751304 - L2 LINE L2 -79 3234 3183 2099 165 112 13 chr12 10531221 10531614 -133750875 - MSTB1 LTR MaLR 0 432 1 242 319 0 14 chr12 10532106 10532175 -133750314 + Alu SINE Alu 219 286 -15 450 276 100 40 chr12 10532200 10532450 -133750039 + AluSq SINE Alu 8 272 -41 265 320 73 33 chr12 10532621 10532771 -133749718 + MIR SINE MIR 64 219 -43 22 0 0 0 chr12 10533095 10533117 -133749372 + AT_rich Low_complexity Low_complexity 1 22 0 220 206 68 55 chr12 10533240 10533313 -133749176 + L2 LINE L2 3171 3244 -69 1894 155 3 0 chr12 10533532 10533822 -133748667 + AluSx SINE Alu 6 296 -16 22 94 0 0 chr12 10534337 10534401 -133748088 + AT_rich Low_complexity Low_complexity 1 64 0 2088 129 3 13 chr12 10534637 10534947 -133747542 + AluSx SINE Alu 6 312 0 550 336 45 12 chr12 10535427 10535671 -133746818 - MIR SINE MIR -3 259 8 315 169 28 28 chr12 10535815 10535886 -133746603 - MER58 DNA MER1_type -109 106 36 2536 285 63 23 chr12 10536297 10537386 -133745103 + L1MEc LINE L1 37 1169 -5227 240 224 0 0 chr12 10537402 10537469 -133745020 + GA-rich Low_complexity Low_complexity 2 68 0 2265 82 0 19 chr12 10537472 10537788 -133744701 + AluY SINE Alu 1 310 -1 1765 118 12 97 chr12 10537984 10538323 -133744166 - AluSq SINE Alu -3 310 1 1776 135 73 4 chr12 10538460 10538734 -133743755 - AluSx SINE Alu -19 293 1 181 213 21 21 chr12 10538767 10538814 -133743675 - MIR SINE MIR -162 100 54 336 288 135 53 chr12 10538952 10539233 -133743256 - L2 LINE L2 -16 3297 2994 270 209 65 108 chr12 10540755 10540894 -133741595 + MER94 DNA DNA 2 134 0 6438 121 136 123 chr12 10541250 10542925 -133739564 + pTR5 LTR ERV1 743 2438 0 357 296 88 16 chr12 10543836 10543961 -133738528 - MER5A DNA MER1_type -1 188 55 261 0 0 0 chr12 10544074 10544103 -133738386 + (CA)n Simple_repeat Simple_repeat 1 29 0 212 215 51 89 chr12 10545722 10545801 -133736688 - MIR SINE MIR -80 182 107 199 345 81 11 chr12 10545867 10545954 -133736535 - L2 LINE L2 -55 3217 3125 1305 174 37 50 chr12 10547634 10547933 -133734556 - AluSg SINE Alu -15 295 1 36 53 0 0 chr12 10547933 10547990 -133734499 + AT_rich Low_complexity Low_complexity 1 57 0 23 33 0 0 chr12 10548946 10548976 -133733513 + AT_rich Low_complexity Low_complexity 1 30 0 1508 130 7 56 chr12 10550414 10550684 -133731805 - AluJb SINE Alu -53 259 3 252 271 43 0 chr12 10551346 10551416 -133731073 + L2 LINE L2 3186 3258 -14 24 53 0 0 chr12 10551421 10551459 -133731030 + AT_rich Low_complexity Low_complexity 1 38 0 259 295 78 36 chr12 10551946 10552139 -133730350 + L2 LINE L2 3113 3313 0 707 167 0 76 chr12 10552358 10552502 -133729987 + AluJo SINE Alu 2 134 -178 652 198 0 77 chr12 10552497 10552704 -133729785 + AluJb SINE Alu 96 286 -26 * 214 149 43 0 chr12 10552712 10552759 -133729730 + A-rich Low_complexity Low_complexity 4 52 0 241 170 0 57 chr12 10553056 10553109 -133729380 + CT-rich Low_complexity Low_complexity 1 50 0 202 228 123 0 chr12 10553813 10553870 -133728619 - MIR SINE MIR -142 120 57 438 248 43 35 chr12 10554420 10554561 -133727928 - MIR SINE MIR -50 212 71 32 0 0 0 chr12 10555468 10555500 -133726989 + AT_rich Low_complexity Low_complexity 1 32 0 185 296 41 61 chr12 10555807 10555905 -133726584 + L2 LINE L2 1876 1971 -1343 269 236 14 14 chr12 10558591 10558663 -133723826 + MIR SINE MIR 184 255 -7 245 271 28 75 chr12 10558673 10558780 -133723709 - MIR SINE MIR -66 142 41 712 250 75 67 chr12 10559945 10560305 -133722184 - MLT1A1 LTR MaLR -2 363 1 193 370 28 0 chr12 10560312 10560420 -133722069 + MIR3 SINE MIR 69 179 -29 1786 240 30 61 chr12 10560857 10561355 -133721134 + MLT1F LTR MaLR 1 482 -60 2119 110 0 29 chr12 10561355 10561663 -133720826 - AluSx SINE Alu -13 299 1 1786 240 30 61 chr12 10561663 10561723 -133720766 + MLT1F LTR MaLR 482 542 0 568 327 19 16 chr12 10561838 10562147 -133720342 + MLT1F-int LTR MaLR 286 595 -776 343 291 83 86 chr12 10562653 10562980 -133719509 + MLT1F-int LTR MaLR 1031 1356 -15 1622 252 43 46 chr12 10562997 10563537 -133718952 + MLT1F1 LTR MaLR 5 567 0 2099 132 0 0 chr12 10563574 10563870 -133718619 - AluSx SINE Alu -16 296 1 303 281 55 34 chr12 10564007 10564153 -133718336 - HAL1 LINE L1 -549 1958 1810 1655 286 68 33 chr12 10564206 10565025 -133717464 - L1ME3 LINE L1 -2 6160 5313 622 241 73 29 chr12 10565022 10565378 -133717111 - L1ME1 LINE L1 -1 6177 5805 * 2098 149 0 0 chr12 10565380 10565688 -133716801 - AluSx SINE Alu -4 308 1 2087 170 7 26 chr12 10565759 10566177 -133716312 - L1PA15 LINE L1 -1 6164 5755 930 236 41 105 chr12 10566198 10566834 -133715655 - L1ME1 LINE L1 -1669 4477 3883 8511 229 101 16 chr12 10566917 10567860 -133714629 - L1MB1 LINE L1 -1 5991 5129 1119 186 203 91 chr12 10567860 10568457 -133714032 - MER4A LTR ERV1 0 664 1 8511 229 101 16 chr12 10568457 10570304 -133712185 - L1MB1 LINE L1 -863 5129 2818 1500 168 36 65 chr12 10570304 10570690 -133711799 - THE1C LTR MaLR 0 375 1 8511 229 101 16 chr12 10570690 10571446 -133711043 - L1MB1 LINE L1 -3174 2818 2127 1587 302 74 26 chr12 10571455 10572120 -133710369 - L1MB1 LINE L1 -5194 697 1 244 188 59 0 chr12 10572132 10572217 -133710272 + (TA)n Simple_repeat Simple_repeat 1 90 0 394 359 55 18 chr12 10573744 10574184 -133708305 + L1M4 LINE L1 2274 2729 -3417 550 204 0 19 chr12 10574264 10574372 -133708117 - Tigger2 DNA MER2_type -18 2700 2595 2947 86 0 41 chr12 10574577 10575044 -133707445 - LTR7 LTR ERV1 -2 448 1 1859 84 40 69 chr12 10575045 10575449 -133707040 - HERVH LTR ERV1 0 7713 7322 1306 124 23 14 chr12 10575447 10575665 -133706824 - HERVH LTR ERV1 -1894 5819 5600 * 2777 170 0 10 chr12 10575666 10576266 -133706223 - HERVH LTR ERV1 -2564 5149 4488 3479 111 0 6 chr12 10576268 10576773 -133705716 - HERVH LTR ERV1 -3720 3993 3492 731 184 41 0 chr12 10576763 10576910 -133705579 - HERVH LTR ERV1 -4423 3290 3138 * 17955 112 29 23 chr12 10576904 10579871 -133702618 - HERVH LTR ERV1 -4728 2985 1 3445 71 4 11 chr12 10579873 10580324 -133702165 - LTR7 LTR ERV1 -2 448 1 1671 149 41 37 chr12 10581036 10581331 -133701158 - AluSx SINE Alu -16 296 1 726 281 36 39 chr12 10581836 10582142 -133700347 - L1ME3 LINE L1 0 6162 5858 19989 123 7 17 chr12 10582145 10586079 -133696410 - L1PA11 LINE L1 -7 6167 2268 1080 161 173 21 chr12 10586079 10586437 -133696052 - L1PBa LINE L1 -3815 2388 1977 962 188 0 12 chr12 10586441 10586611 -133695878 - AluSq SINE Alu -7 306 139 1314 195 3 26 chr12 10586617 10586924 -133695565 - AluSq SINE Alu -3 310 11 562 237 8 8 chr12 10586951 10587069 -133695420 - FLAM_C SINE Alu -15 118 1 5812 166 40 22 chr12 10587072 10589061 -133693428 - L1PBa LINE L1 -4225 1979 1 423 0 0 0 chr12 10589297 10589344 -133693145 + (TG)n Simple_repeat Simple_repeat 2 48 0 1490 131 9 5 chr12 10589379 10589600 -133692889 - AluSg SINE Alu -88 222 1 393 238 38 19 chr12 10589975 10590080 -133692409 - MLT1G1 LTR MaLR -2 593 487 365 321 10 38 chr12 10590220 10590496 -133691993 - MLT1H1 LTR MaLR -289 266 2 2175 87 0 14 chr12 10590501 10590811 -133691678 + AluSc SINE Alu 1 306 0 299 372 22 15 chr12 10591145 10591282 -133691207 + L2 LINE L2 2950 3087 -185 2016 131 3 3 chr12 10591357 10591639 -133690850 + AluSq SINE Alu 1 282 -31 604 93 0 0 chr12 10591564 10591639 -133690850 + AluSp/q SINE Alu 208 311 0 201 35 35 0 chr12 10591639 10591668 -133690821 + (CAAA)n Simple_repeat Simple_repeat 1 172 0 2174 163 14 16 chr12 10591904 10592267 -133690222 - MLT1A1 LTR MaLR 0 365 4 1135 240 77 36 chr12 10592545 10592936 -133689553 + MER74B LTR ERVL 123 529 -93 1596 217 91 23 chr12 10593225 10593654 -133688835 + MLT1C LTR MaLR 2 459 -8 2200 121 0 0 chr12 10593702 10593992 -133688497 + AluSx SINE Alu 1 290 -22 471 325 62 29 chr12 10594165 10594439 -133688050 + HAL1 LINE L1 365 647 -1860 2328 93 3 10 chr12 10594507 10594819 -133687670 - AluSx SINE Alu -2 310 1 863 249 129 38 chr12 10594821 10595295 -133687194 + HAL1 LINE L1 785 1301 -1206 2557 64 0 0 chr12 10595407 10595705 -133686784 - AluY SINE Alu -13 298 1 2624 141 0 3 chr12 10596169 10596545 -133685944 + THE1C LTR MaLR 1 375 0 2227 136 109 22 chr12 10596549 10596961 -133685528 - MER83 LTR ERV1 0 448 1 3797 59 6 0 chr12 10596999 10597508 -133684981 + L1PA8 LINE L1 5652 6171 0 1427 207 6 19 chr12 10597572 10597886 -133684603 + AluJb SINE Alu 1 310 -2 477 275 33 39 chr12 10597950 10598132 -133684357 + MLT1E1 LTR MaLR 5 185 -469 1973 124 0 20 chr12 10598154 10598453 -133684036 - AluSx SINE Alu -19 293 1 40 0 0 0 chr12 10598652 10598692 -133683797 + AT_rich Low_complexity Low_complexity 1 40 0 216 341 144 6 chr12 10599658 10599825 -133682664 + MIR SINE MIR 2 191 -71 359 193 0 48 chr12 10600213 10600296 -133682193 + L1MC5 LINE L1 7707 7785 -176 1631 147 61 14 chr12 10600487 10600780 -133681709 + AluSx SINE Alu 1 307 -5 1062 105 6 19 chr12 10600853 10601015 -133681474 - L1MB3 LINE L1 -18 6165 6006 2079 101 3 7 chr12 10601037 10601354 -133681135 - AluSq SINE Alu 0 316 1 857 218 61 74 chr12 10601399 10601725 -133680764 + MLT2D LTR ERVL 93 414 0 1105 253 24 6 chr12 10601727 10602049 -133680440 - L1MB3 LINE L1 -175 6008 5682 394 221 148 40 chr12 10602063 10602212 -133680277 + MLT1E LTR MaLR 10 174 -419 628 214 25 88 chr12 10602335 10602573 -133679916 + MLT1E LTR MaLR 371 593 0 683 250 26 26 chr12 10603718 10603910 -133678579 - MIR SINE MIR -34 228 37 25 0 0 0 chr12 10604255 10604280 -133678209 + AT_rich Low_complexity Low_complexity 1 25 0 1160 149 26 0 chr12 10604586 10604828 -133677661 + AluSg/x SINE Alu 85 331 0 724 183 15 8 chr12 10605087 10605218 -133677271 - AluJo SINE Alu -170 142 11 2083 102 0 20 chr12 10605284 10605588 -133676901 + AluSp SINE Alu 14 311 -2 1273 199 0 43 chr12 10606329 10606630 -133675859 - AluJb SINE Alu -23 289 2 1937 109 4 4 chr12 10606860 10607126 -133675363 - L1PB1 LINE L1 -1 6150 5885 2056 105 6 46 chr12 10607277 10607601 -133674888 - AluSp SINE Alu -2 311 1 1549 166 3 28 chr12 10607768 10608057 -133674432 - AluSq SINE Alu -31 282 1 384 206 112 9 chr12 10608520 10608627 -133673862 - MER39 LTR ERV1 0 707 590 934 171 199 28 chr12 10608627 10608878 -133673611 + MER39 LTR ERV1 413 706 -1 451 242 92 67 chr12 10608879 10609140 -133673349 - MER39 LTR ERV1 -223 484 8 931 240 62 74 chr12 10609334 10609531 -133672958 + MER67B LTR ERV1 3 201 -509 1867 112 3 29 chr12 10609531 10609844 -133672645 + AluY SINE Alu 1 305 -6 931 240 62 74 chr12 10609844 10609907 -133672582 + MER67B LTR ERV1 201 263 -447 2296 80 3 13 chr12 10609907 10610218 -133672271 + AluSp SINE Alu 1 308 -5 931 240 62 74 chr12 10610218 10610477 -133672012 + MER67B LTR ERV1 263 398 -312 461 236 64 19 chr12 10610451 10610676 -133671813 + MER67A LTR ERV1 273 543 0 * 472 298 68 40 chr12 10610907 10611155 -133671334 + MIR SINE MIR 2 256 -6 2177 125 0 6 chr12 10611979 10612290 -133670199 + AluSx SINE Alu 1 309 -3 330 264 90 58 chr12 10613193 10613348 -133669141 - MIR SINE MIR -23 239 80 360 0 0 0 chr12 10613659 10613699 -133668790 + (TG)n Simple_repeat Simple_repeat 2 41 0 1036 145 16 116 chr12 10613733 10613975 -133668514 - AluJo SINE Alu -94 218 1 517 302 11 67 chr12 10614183 10614451 -133668038 - MIR SINE MIR -2 260 8 186 250 0 0 chr12 10614784 10614836 -133667653 - L2 LINE L2 0 3313 3262 189 147 0 0 chr12 10614975 10615009 -133667480 + (TTTTC)n Simple_repeat Simple_repeat 4 37 0 1453 168 80 18 chr12 10616736 10617010 -133665479 - AluJb SINE Alu -11 301 11 224 333 13 0 chr12 10617816 10617894 -133664595 + MIR3 SINE MIR 109 187 -21 1545 177 78 14 chr12 10618699 10618982 -133663507 - AluJb SINE Alu -11 301 1 609 196 0 74 chr12 10619818 10619955 -133662534 + AluJb SINE Alu 161 286 -26 243 61 0 0 chr12 10619955 10619988 -133662501 + (CA)n Simple_repeat Simple_repeat 2 34 0 609 196 0 74 chr12 10619988 10620013 -133662476 + AluJb SINE Alu 286 311 -1 5830 73 1 11 chr12 10620417 10621256 -133661233 + L1P3 LINE L1 1 960 -5186 184 288 17 34 chr12 10621839 10621898 -133660591 + L2 LINE L2 3237 3294 -19 201 267 199 30 chr12 10621958 10622089 -133660400 - MIR SINE MIR -64 198 46 617 270 143 9 chr12 10623128 10623358 -133659131 + MIR SINE MIR 2 262 0 291 104 0 0 chr12 10623687 10623735 -133658754 + (CA)n Simple_repeat Simple_repeat 1 48 0 242 284 61 47 chr12 10623790 10623938 -133658551 + L2 LINE L2 3160 3309 -4 860 190 38 9 chr12 10624209 10624420 -133658069 - HAL1 LINE L1 -313 2194 1978 180 115 0 0 chr12 10624487 10624513 -133657976 - L2 LINE L2 -97 3216 3191 429 265 119 27 chr12 10624609 10624794 -133657695 - HAL1 LINE L1 -594 1913 1712 433 280 0 0 chr12 10624831 10624931 -133657558 + 7SLRNA srpRNA srpRNA 211 310 -10 548 239 53 5 chr12 10627875 10628084 -133654405 + L1M4 LINE L1 2984 3202 -2944 4777 168 7 16 chr12 10628098 10628991 -133653498 - L1PA16 LINE L1 -9 6157 5273 1864 152 3 3 chr12 10629019 10629308 -133653181 - AluSq SINE Alu -24 289 1 1868 139 77 52 chr12 10629319 10629685 -133652804 - THE1C LTR MaLR 0 375 1 9227 129 40 32 chr12 10629685 10631253 -133651236 - THE1C-int LTR MaLR 0 1580 1 1871 147 106 29 chr12 10631253 10631601 -133650888 - THE1C LTR MaLR 0 375 1 1732 180 3 0 chr12 10632144 10632433 -133650056 + AluSx SINE Alu 1 290 -22 255 356 18 61 chr12 10632665 10632905 -133649584 + L2 LINE L2 2795 3028 -285 3075 194 159 18 chr12 10632905 10633753 -133648736 + LTR28 LTR ERV1 1 1018 -2 237 303 0 113 chr12 10633898 10633951 -133648538 + L2 LINE L2 3141 3198 -74 2269 122 3 3 chr12 10633951 10634263 -133648226 - AluSp SINE Alu -1 312 1 237 303 0 113 chr12 10634263 10634351 -133648138 + L2 LINE L2 3198 3266 -6 1029 108 17 6 chr12 10635280 10635456 -133647033 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 2191 116 0 0 chr12 10635456 10635809 -133646680 - AluSx SINE Alu 0 364 12 1612 162 10 13 chr12 10635937 10636240 -133646249 - AluJb SINE Alu -10 302 1 270 233 23 23 chr12 10636403 10636489 -133646000 - L1MC5 LINE L1 -35 7926 7841 241 188 0 0 chr12 10636529 10636577 -133645912 - L1MC5 LINE L1 -86 7875 7828 1272 219 40 68 chr12 10636717 10637220 -133645269 - L1MC5 LINE L1 -469 7492 7004 422 196 28 47 chr12 10637260 10637367 -133645122 - L1MC4 LINE L1 -11 8031 7927 1163 143 0 88 chr12 10637373 10637611 -133644878 - MER67D LTR ERV1 -294 220 4 245 182 0 30 chr12 10637615 10637681 -133644808 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 1630 178 11 33 chr12 10638371 10638731 -133643758 - L1MA7 LINE L1 -598 5702 5351 * 1670 180 50 19 chr12 10638729 10639091 -133643398 + L1MA7 LINE L1 5703 6075 -216 493 173 16 24 chr12 10639093 10639220 -133643269 + L1MA7 LINE L1 6166 6291 0 2350 89 20 0 chr12 10639225 10639527 -133642962 + AluSx SINE Alu 1 308 -4 27 29 0 0 chr12 10639769 10639803 -133642686 + AT_rich Low_complexity Low_complexity 1 34 0 2346 94 0 3 chr12 10640399 10640707 -133641782 + AluSq SINE Alu 6 312 -1 391 333 14 0 chr12 10640804 10640945 -133641544 - MIR SINE MIR -2 260 118 2181 123 0 0 chr12 10640971 10641264 -133641225 + AluSx SINE Alu 2 294 -18 820 224 12 6 chr12 10641713 10641883 -133640606 - FRAM SINE Alu -11 165 1 180 0 0 0 chr12 10641899 10641919 -133640570 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1662 115 0 4 chr12 10642849 10643075 -133639414 - AluSx SINE Alu -24 288 64 21 0 0 0 chr12 10643085 10643106 -133639383 + AT_rich Low_complexity Low_complexity 1 21 0 2032 152 30 14 chr12 10643512 10643881 -133638608 + THE1C LTR MaLR 1 375 0 307 260 96 34 chr12 10643885 10644062 -133638427 + HsTC2 DNA Tc2 29 216 -1682 240 178 40 88 chr12 10644164 10644286 -133638203 + HsTC2 DNA Tc2 1250 1540 -358 22 35 0 0 chr12 10644392 10644421 -133638068 + AT_rich Low_complexity Low_complexity 1 29 0 485 70 0 14 chr12 10644456 10644527 -133637962 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 1419 186 7 17 chr12 10644535 10644830 -133637659 - AluSx SINE Alu -10 292 1 372 335 32 2 chr12 10645339 10645507 -133636982 - MIR SINE MIR -59 149 23 1272 117 0 5 chr12 10646400 10646588 -133635901 - AluSg/x SINE Alu -3 307 121 1843 157 0 6 chr12 10647069 10647381 -133635108 - AluSx SINE Alu -2 310 1 3549 121 15 6 chr12 10647428 10647950 -133634539 - MER1A DNA MER1_type 0 527 1 610 244 0 62 chr12 10648111 10648271 -133634218 + AluJo SINE Alu 1 150 -162 748 247 0 17 chr12 10648296 10648490 -133633999 + AluJb SINE Alu 116 306 0 232 319 42 14 chr12 10649233 10649377 -133633112 - L1MEc LINE L1 -5155 1241 1094 3409 137 4 5 chr12 10649377 10649932 -133632557 - L1PA14 LINE L1 0 6161 5608 2413 105 3 62 chr12 10649935 10650125 -133632364 + L1P4 LINE L1 5020 5220 -941 2379 62 0 13 chr12 10650125 10650432 -133632057 + AluY SINE Alu 1 303 -8 2413 105 3 62 chr12 10650432 10650586 -133631903 + L1P4 LINE L1 5220 5382 -779 2236 101 3 19 chr12 10650586 10650903 -133631586 + AluSx SINE Alu 1 312 0 2413 105 3 62 chr12 10650903 10651184 -133631305 + L1P4 LINE L1 5382 5603 -558 2759 257 58 41 chr12 10651240 10654030 -133628459 - L1M4 LINE L1 -2904 3478 542 2120 137 7 0 chr12 10655689 10655996 -133626493 + AluSx SINE Alu 1 309 -3 296 287 82 10 chr12 10656271 10656466 -133626023 - L1MEc LINE L1 -4876 1520 1312 736 103 0 44 chr12 10656527 10656663 -133625826 + AluSg SINE Alu 1 130 -180 1467 122 0 53 chr12 10656671 10656974 -133625515 + AluY SINE Alu 1 287 -24 310 325 33 7 chr12 10657163 10657314 -133625175 + MER117 DNA MER1_type 43 197 0 363 400 15 30 chr12 10657682 10657947 -133624542 + MIR SINE MIR 2 262 0 2347 162 67 18 chr12 10660600 10660739 -133621750 - L1MA9 LINE L1 -1 6311 6180 207 0 0 0 chr12 10660739 10660762 -133621727 + (TG)n Simple_repeat Simple_repeat 2 24 0 2347 162 67 18 chr12 10660762 10661133 -133621356 - L1MA9 LINE L1 -132 6180 5776 24 32 0 0 chr12 10661204 10661235 -133621254 + AT_rich Low_complexity Low_complexity 1 31 0 2108 112 0 7 chr12 10661537 10661831 -133620658 + AluSx SINE Alu 5 296 -16 29 47 0 0 chr12 10662641 10662684 -133619805 + AT_rich Low_complexity Low_complexity 1 43 0 180 219 0 0 chr12 10662736 10662777 -133619712 + (TA)n Simple_repeat Simple_repeat 2 42 0 1071 38 0 32 chr12 10662996 10663154 -133619335 - L1PA4 LINE L1 -2 6153 6001 269 347 42 26 chr12 10663475 10663665 -133618824 - L2 LINE L2 -1 3312 3120 368 279 18 0 chr12 10663819 10663930 -133618559 - MER94 DNA DNA -21 113 1 293 387 85 15 chr12 10663941 10664272 -133618217 - L2 LINE L2 -407 2907 2554 279 293 96 63 chr12 10664547 10664912 -133617577 - L1M4 LINE L1 -1800 4346 3970 2258 116 0 3 chr12 10665209 10665520 -133616969 - AluSx SINE Alu -2 310 1 22 70 0 0 chr12 10665893 10665936 -133616553 + AT_rich Low_complexity Low_complexity 1 43 0 29 28 0 0 chr12 10666370 10666406 -133616083 + AT_rich Low_complexity Low_complexity 1 36 0 2327 95 0 0 chr12 10666856 10667150 -133615339 - AluSx SINE Alu -15 297 4 302 310 54 16 chr12 10667945 10668074 -133614415 + MIR SINE MIR 119 252 -10 21 57 0 0 chr12 10668892 10668927 -133613562 + AT_rich Low_complexity Low_complexity 1 35 0 2014 139 10 0 chr12 10670091 10670379 -133612110 + AluSx SINE Alu 1 291 -21 354 337 63 5 chr12 10670400 10670590 -133611899 + L1M4 LINE L1 2227 2427 -3719 338 266 44 9 chr12 10670668 10670781 -133611708 - L1MEd LINE L1 -5026 1093 977 2077 111 3 13 chr12 10670986 10671284 -133611205 - AluSx SINE Alu -17 295 1 409 275 135 62 chr12 10671900 10672336 -133610153 - L1ME3A LINE L1 -15 6155 5688 1132 92 0 0 chr12 10672621 10672773 -133609716 - AluSp/q SINE Alu -6 307 156 216 0 0 0 chr12 10673215 10673239 -133609250 + (T)n Simple_repeat Simple_repeat 1 24 0 28 0 0 0 chr12 10673811 10673839 -133608650 + AT_rich Low_complexity Low_complexity 1 28 0 305 137 14 14 chr12 10673865 10673938 -133608551 - L1MC2 LINE L1 -1 6343 6271 276 182 182 0 chr12 10673938 10673993 -133608496 - HERVL40 LTR ERVL -2106 3424 3360 2386 229 32 7 chr12 10674061 10674630 -133607859 + HERVL40 LTR ERVL 3438 4020 -1510 216 0 0 0 chr12 10674888 10674912 -133607577 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2041 130 13 26 chr12 10675089 10675467 -133607022 - L1PA15 LINE L1 -1 6164 5792 26 0 0 0 chr12 10676459 10676485 -133606004 + AT_rich Low_complexity Low_complexity 1 26 0 1171 229 147 37 chr12 10677074 10677529 -133604960 + MLT1D LTR MaLR 1 505 0 2271 101 3 3 chr12 10678374 10678670 -133603819 - AluSp SINE Alu -16 297 2 273 340 86 41 chr12 10678790 10679081 -133603408 - L2 LINE L2 -206 3107 2804 350 296 78 49 chr12 10679105 10679389 -133603100 - LTR33A LTR ERVL 0 523 232 1230 153 91 16 chr12 10679401 10679655 -133602834 + L1MB1 LINE L1 5895 6167 -1 22 0 0 0 chr12 10679655 10679677 -133602812 + AT_rich Low_complexity Low_complexity 1 22 0 297 273 47 39 chr12 10679705 10679833 -133602656 - LTR33A LTR ERVL -305 218 90 1597 105 3 75 chr12 10680053 10680384 -133602105 + AluSq SINE Alu 5 313 0 252 329 60 12 chr12 10680690 10680857 -133601632 + MER46C DNA MER2_type 159 333 -5 2061 102 14 7 chr12 10680863 10681158 -133601331 + AluSp SINE Alu 1 297 -16 252 351 81 22 chr12 10682528 10682713 -133599776 - MIR SINE MIR -18 244 49 568 139 44 58 chr12 10682852 10682989 -133599500 - FLAM_C SINE Alu 0 143 9 1926 138 10 0 chr12 10683049 10683340 -133599149 + AluSx SINE Alu 4 297 -15 2443 61 3 3 chr12 10683988 10684285 -133598204 + AluY SINE Alu 3 299 -12 1265 119 0 0 chr12 10684286 10684462 -133598027 + AluSg/x SINE Alu 126 301 -11 216 226 38 0 chr12 10684483 10684536 -133597953 + (TATG)n Simple_repeat Simple_repeat 3 57 0 360 289 100 28 chr12 10684718 10684898 -133597591 + MIR SINE MIR 60 252 -10 1837 97 7 25 chr12 10686018 10686296 -133596193 - AluSp SINE Alu -32 281 9 219 203 136 0 chr12 10686812 10686871 -133595618 + MIR SINE MIR 186 252 -10 270 253 111 0 chr12 10686883 10686982 -133595507 + L1MC5 LINE L1 6993 7102 -859 668 165 11 114 chr12 10687015 10687191 -133595298 + L1MD2 LINE L1 6083 6240 -119 12984 148 31 19 chr12 10687199 10687853 -133594636 - Tigger1 DNA MER2_type -1 2417 1772 3423 83 0 11 chr12 10687853 10688323 -133594166 - L1PA8 LINE L1 0 6172 5708 12984 148 31 19 chr12 10688323 10690041 -133592448 - Tigger1 DNA MER2_type -646 1772 17 2103 120 7 7 chr12 10690642 10690943 -133591546 - AluSx SINE Alu -11 301 1 515 242 9 96 chr12 10691087 10691306 -133591183 + L1ME3A LINE L1 5882 6081 -89 21 0 0 0 chr12 10692246 10692267 -133590222 + AT_rich Low_complexity Low_complexity 1 21 0 2444 70 0 0 chr12 10692479 10692780 -133589709 + AluY SINE Alu 1 301 -10 37 23 0 0 chr12 10693659 10693703 -133588786 + AT_rich Low_complexity Low_complexity 1 44 0 25 65 0 0 chr12 10693758 10693804 -133588685 + AT_rich Low_complexity Low_complexity 1 46 0 3369 128 8 16 chr12 10694743 10695258 -133587231 + MER9 LTR ERVK 1 511 0 236 91 23 0 chr12 10695452 10695496 -133586993 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 9452 145 50 22 chr12 10695654 10697366 -133585123 - Tigger1 DNA MER2_type -1 2417 657 1978 253 64 16 chr12 10697385 10697946 -133584543 + LTR26 LTR ERV1 16 603 0 * 3093 186 46 19 chr12 10697946 10698589 -133583900 - Tigger1 DNA MER2_type -1757 661 1 1809 210 69 99 chr12 10698735 10699435 -133583054 - LTR8A LTR ERV1 -15 712 34 267 217 36 72 chr12 10699595 10699678 -133582811 - LTR48 LTR ERV1 -128 659 580 937 186 116 28 chr12 10699807 10700022 -133582467 - MER34C LTR ERV1 -351 234 1 1503 135 73 15 chr12 10700742 10701002 -133581487 - AluSp SINE Alu -38 275 1 457 338 73 16 chr12 10701642 10701956 -133580533 - LTR16C LTR ERVL -4 487 156 2346 48 19 32 chr12 10702179 10702494 -133579995 + AluY SINE Alu 1 311 0 243 61 0 0 chr12 10702552 10702585 -133579904 + (TG)n Simple_repeat Simple_repeat 2 34 0 460 298 58 0 chr12 10703731 10703902 -133578587 + MIR SINE MIR 82 262 0 280 319 53 43 chr12 10705185 10705373 -133577116 + MIR SINE MIR 29 218 -44 1612 101 13 82 chr12 10706432 10706749 -133575740 - AluSq SINE Alu -18 295 1 1795 148 52 7 chr12 10706841 10707132 -133575357 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr12 10707551 10707579 -133574910 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr12 10708269 10708306 -133574183 + AT_rich Low_complexity Low_complexity 1 37 0 2126 123 10 0 chr12 10708370 10708679 -133573810 - AluSq SINE Alu -1 312 1 189 74 0 0 chr12 10708698 10708725 -133573764 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 1735 152 0 7 chr12 10708725 10709007 -133573482 - AluY SINE Alu -29 282 1 375 226 102 102 chr12 10709012 10709103 -133573386 + HAL1 LINE L1 1580 1670 -837 2224 107 0 10 chr12 10709103 10709403 -133573086 - AluSx SINE Alu -15 297 1 375 226 102 102 chr12 10709403 10709497 -133572992 + HAL1 LINE L1 1669 1765 -742 490 286 71 16 chr12 10709617 10709799 -133572690 - MIR SINE MIR -59 203 12 471 223 85 121 chr12 10709823 10710187 -133572302 + HAL1 LINE L1 2155 2505 -2 2102 94 10 10 chr12 10710210 10710508 -133571981 + AluSp SINE Alu 3 300 -13 1896 141 7 10 chr12 10710685 10710984 -133571505 - AluSx SINE Alu -14 298 1 2284 113 3 3 chr12 10711011 10711322 -133571167 - AluSq SINE Alu -2 311 1 2070 107 0 19 chr12 10711948 10712265 -133570224 + AluY SINE Alu 1 311 0 2026 155 3 0 chr12 10712270 10712580 -133569909 + AluSq SINE Alu 3 313 0 1651 87 148 23 chr12 10713219 10713483 -133569006 + AluSc SINE Alu 1 297 -2 2112 117 0 13 chr12 10714531 10714840 -133567649 - AluSx SINE Alu -7 305 1 228 24 73 0 chr12 10714856 10714897 -133567592 + A-rich Low_complexity Low_complexity 2 45 0 363 320 61 7 chr12 10715375 10715522 -133566967 - MIR SINE MIR -76 186 32 309 231 115 0 chr12 10716078 10716156 -133566333 - MIR SINE MIR -95 167 81 2403 70 10 10 chr12 10716560 10716861 -133565628 - AluY SINE Alu -10 301 1 1995 148 7 3 chr12 10717399 10717704 -133564785 - AluSx SINE Alu -6 306 1 2260 99 3 6 chr12 10718315 10718627 -133563862 + AluSp SINE Alu 2 312 -1 223 193 0 53 chr12 10718710 10718767 -133563722 + MIR SINE MIR 75 128 -134 1992 113 3 7 chr12 10718773 10719066 -133563423 - AluSx SINE Alu -20 292 1 205 51 51 0 chr12 10719248 10719287 -133563202 + A-rich Low_complexity Low_complexity 2 42 0 22 0 0 0 chr12 10719347 10719369 -133563120 + AT_rich Low_complexity Low_complexity 1 22 0 385 243 10 19 chr12 10719609 10719712 -133562777 + MIR SINE MIR 56 157 -105 274 336 76 0 chr12 10719928 10720059 -133562430 - MIR3 SINE MIR -20 188 48 423 295 0 34 chr12 10720352 10720501 -133561988 + MIR SINE MIR 1 144 -118 23 0 0 0 chr12 10721895 10721918 -133560571 + GC_rich Low_complexity Low_complexity 1 23 0 2152 73 31 0 chr12 10722930 10723217 -133559272 + AluSp SINE Alu 1 296 -17 1928 142 7 0 chr12 10723661 10723963 -133558526 + AluJb SINE Alu 1 304 -8 1552 76 4 44 chr12 10723965 10724190 -133558299 + AluSc SINE Alu 1 216 -93 531 85 4 11 chr12 10724233 10724469 -133558020 + AluY SINE Alu 1 297 -14 1957 115 3 22 chr12 10724561 10724873 -133557616 - AluSq SINE Alu -7 306 1 1824 133 3 7 chr12 10725003 10725315 -133557174 - AluSx SINE Alu 0 311 1 2372 68 0 7 chr12 10726365 10726658 -133555831 - AluSg SINE Alu -17 293 3 1217 248 90 52 chr12 10726709 10726755 -133555734 - MLT2B1 LTR ERVL 0 520 477 2188 171 6 0 chr12 10726755 10727099 -133555390 - MER7A DNA MER2_type -1 345 2 1217 248 90 52 chr12 10727099 10727553 -133554936 - MLT2B1 LTR ERVL -43 477 1 216 258 65 32 chr12 10727618 10727680 -133554809 - MER5B DNA MER1_type -10 168 105 229 299 13 13 chr12 10727805 10727882 -133554607 - MER5B DNA MER1_type -101 77 1 2256 123 0 0 chr12 10728062 10728371 -133554118 + AluSg SINE Alu 1 309 -1 1300 152 10 10 chr12 10728371 10728575 -133553914 + AluSg/x SINE Alu 85 288 -24 820 187 20 7 chr12 10728840 10728990 -133553499 - MER6 DNA MER2_type 0 865 714 2240 131 0 0 chr12 10728994 10729306 -133553183 - AluSx SINE Alu 0 312 1 234 91 0 0 chr12 10729658 10729691 -133552798 + (ATG)n Simple_repeat Simple_repeat 2 34 0 949 177 67 35 chr12 10729872 10729907 -133552582 - MER33 DNA MER1_type -2261 324 292 189 0 0 0 chr12 10729907 10729928 -133552561 + (TA)n Simple_repeat Simple_repeat 2 22 0 949 177 67 35 chr12 10729928 10730146 -133552343 - MER33 DNA MER1_type -2293 292 63 833 129 0 0 chr12 10730146 10730262 -133552227 + FLAM_C SINE Alu 1 116 -27 288 234 109 0 chr12 10730285 10730349 -133552140 - MER33 DNA MER1_type -252 72 2 411 133 444 0 chr12 10730718 10730808 -133551681 + AluYb8 SINE Alu 2 131 -187 225 0 0 0 chr12 10732553 10732578 -133549911 + (CA)n Simple_repeat Simple_repeat 2 26 0 3554 248 84 48 chr12 10733130 10733865 -133548624 - L1ME1 LINE L1 -5 6161 5455 1632 158 3 11 chr12 10733865 10734150 -133548339 - AluSq SINE Alu -26 287 5 3554 248 84 48 chr12 10734150 10734338 -133548151 - L1ME1 LINE L1 -711 5455 5275 1841 120 23 20 chr12 10734338 10734637 -133547852 - AluSq SINE Alu -13 300 1 3554 248 84 48 chr12 10734637 10736087 -133546402 - L1ME1 LINE L1 -891 5275 3880 1239 197 6 61 chr12 10736087 10736417 -133546072 - AluJo SINE Alu 0 312 1 2133 106 3 7 chr12 10736422 10736723 -133545766 - AluSq SINE Alu -13 300 1 3554 248 84 48 chr12 10736723 10736934 -133545555 - L1ME1 LINE L1 -2289 3877 3675 2281 77 7 3 chr12 10736934 10737234 -133545255 - AluSg SINE Alu -9 301 1 3554 248 84 48 chr12 10737234 10737502 -133544987 - L1ME1 LINE L1 -2491 3675 3193 327 303 92 89 chr12 10737551 10738070 -133544419 + L1PA13 LINE L1 924 1444 -6130 882 274 91 30 chr12 10738494 10738866 -133543623 + L1PA13 LINE L1 2244 2638 -4943 1460 109 9 5 chr12 10738988 10739199 -133543290 + AluSg/x SINE Alu 90 301 -8 28 29 0 0 chr12 10739992 10740027 -133542462 + AT_rich Low_complexity Low_complexity 1 35 0 1353 133 178 42 chr12 10740133 10740256 -133542233 - AluSx SINE Alu -2 300 195 2217 104 7 0 chr12 10740256 10740545 -133541944 - AluSp SINE Alu -18 295 5 1353 133 178 42 chr12 10740545 10740685 -133541804 - AluSx SINE Alu -107 195 1 1034 119 0 0 chr12 10741297 10741448 -133541041 + AluSg SINE Alu 1 151 -159 2450 218 62 53 chr12 10741718 10742504 -133539985 - MER21B LTR ERV1 -70 793 1 2251 90 19 16 chr12 10744343 10744654 -133537835 - AluSx SINE Alu 0 312 1 307 226 88 66 chr12 10744676 10744768 -133537721 - MIR SINE MIR -72 190 93 2112 104 21 0 chr12 10744768 10745056 -133537433 + AluSg SINE Alu 1 294 -16 307 226 88 66 chr12 10745056 10745100 -133537389 - MIR SINE MIR -169 93 51 2136 112 0 3 chr12 10745287 10745596 -133536893 + AluSq SINE Alu 1 308 0 251 225 0 50 chr12 10745987 10746067 -133536422 + A-rich Low_complexity Low_complexity 2 77 0 255 61 0 0 chr12 10747747 10747780 -133534709 + (TC)n Simple_repeat Simple_repeat 2 34 0 2329 58 0 32 chr12 10747882 10748192 -133534297 - AluY SINE Alu -11 300 1 2170 102 3 0 chr12 10748641 10748974 -133533515 + AluSp SINE Alu 1 334 0 4532 118 40 32 chr12 10749333 10749835 -133532654 - MER4E LTR ERV1 -1 778 265 1943 118 7 21 chr12 10749835 10750146 -133532343 - AluSq SINE Alu 0 307 1 4532 118 40 32 chr12 10750146 10750414 -133532075 - MER4E LTR ERV1 -514 265 1 1897 125 24 3 chr12 10750434 10750559 -133531930 + AluSx SINE Alu 1 122 -190 186 103 0 0 chr12 10750559 10750588 -133531901 + (CA)n Simple_repeat Simple_repeat 2 30 0 1897 125 24 3 chr12 10750588 10750749 -133531740 + AluSx SINE Alu 122 293 -19 1926 133 3 7 chr12 10751067 10751361 -133531128 - AluSx SINE Alu -14 298 6 2218 90 0 0 chr12 10751409 10751710 -133530779 - L1PA4 LINE L1 -3 6152 5852 229 372 47 21 chr12 10752041 10752232 -133530257 + L2 LINE L2 2181 2376 -938 444 295 57 89 chr12 10752404 10752814 -133529675 + L2 LINE L2 2367 2757 -557 2136 122 10 3 chr12 10752814 10753117 -133529372 + AluSq SINE Alu 1 305 -8 444 295 57 89 chr12 10753117 10753248 -133529241 + L2 LINE L2 2757 2891 -423 1975 148 7 3 chr12 10753256 10753554 -133528935 - AluSx SINE Alu -13 299 1 1945 138 3 6 chr12 10753856 10754167 -133528322 - AluSx SINE Alu 0 312 3 225 83 0 0 chr12 10754248 10754284 -133528205 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1885 121 0 17 chr12 10754289 10754586 -133527903 - AluSq SINE Alu -21 292 1 272 250 69 76 chr12 10755576 10755695 -133526794 - MIR SINE MIR -31 231 112 1371 169 7 23 chr12 10755695 10755997 -133526492 + AluSq SINE Alu 1 297 -16 272 250 69 76 chr12 10755997 10756021 -133526468 - MIR SINE MIR -150 112 89 2137 112 3 10 chr12 10757584 10757887 -133524602 - AluSx SINE Alu -11 301 1 1822 132 10 34 chr12 10757898 10758072 -133524417 - AluSg SINE Alu -19 291 125 186 43 0 0 chr12 10758072 10758095 -133524394 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1822 132 10 34 chr12 10758095 10758216 -133524273 - AluSg SINE Alu -185 125 3 2051 134 0 13 chr12 10758304 10758611 -133523878 + AluSx SINE Alu 1 303 -9 1294 149 106 18 chr12 10758690 10758972 -133523517 + AluSx SINE Alu 1 307 -5 438 20 0 0 chr12 10758978 10759029 -133523460 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 231 188 0 0 chr12 10759022 10759070 -133523419 + GA-rich Low_complexity Low_complexity 1 48 0 * 891 150 7 0 chr12 10759076 10759216 -133523273 + AluSq/x SINE Alu 3 143 -170 2245 93 0 10 chr12 10759225 10759538 -133522951 + AluY SINE Alu 1 310 -1 39 0 0 0 chr12 10760320 10760359 -133522130 + AT_rich Low_complexity Low_complexity 1 39 0 1484 158 55 28 chr12 10760532 10760786 -133521703 + AluJo SINE Alu 1 261 -51 21 95 0 0 chr12 10760908 10760971 -133521518 + AT_rich Low_complexity Low_complexity 1 63 0 25 31 0 0 chr12 10761756 10761788 -133520701 + AT_rich Low_complexity Low_complexity 1 32 0 29 0 0 0 chr12 10762134 10762163 -133520326 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr12 10763199 10763234 -133519255 + AT_rich Low_complexity Low_complexity 1 35 0 2224 117 3 0 chr12 10764379 10764669 -133517820 + AluSx SINE Alu 1 291 -21 374 351 58 0 chr12 10764691 10764899 -133517590 + L1M4 LINE L1 2227 2446 -3700 320 257 44 9 chr12 10764958 10765071 -133517418 - L1MEd LINE L1 -5026 1093 977 2273 112 3 0 chr12 10765267 10765570 -133516919 - AluSx SINE Alu -8 304 1 308 275 135 62 chr12 10766181 10766617 -133515872 - L1ME3A LINE L1 -15 6155 5688 1248 92 0 0 chr12 10766902 10767065 -133515424 - AluSp SINE Alu -6 307 145 21 0 0 0 chr12 10767223 10767244 -133515245 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr12 10767495 10767518 -133514971 + (T)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr12 10768093 10768118 -133514371 + AT_rich Low_complexity Low_complexity 1 25 0 294 137 14 14 chr12 10768144 10768217 -133514272 - L1MC2 LINE L1 -1 6343 6271 258 151 226 0 chr12 10768219 10768272 -133514217 - HERVL68 LTR ERVL -1466 1571 1507 2304 227 30 5 chr12 10768340 10768909 -133513580 + HERVL40 LTR ERVL 3438 4020 -1510 216 0 0 0 chr12 10769167 10769191 -133513298 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2339 132 11 3 chr12 10769368 10769738 -133512751 - L1PA15 LINE L1 -1 6164 5792 26 0 0 0 chr12 10770729 10770755 -133511734 + AT_rich Low_complexity Low_complexity 1 26 0 425 345 40 6 chr12 10770986 10771160 -133511329 - LTR33 LTR ERVL -309 212 33 1181 222 149 40 chr12 10771344 10771799 -133510690 + MLT1D LTR MaLR 1 505 0 27 0 0 0 chr12 10772500 10772527 -133509962 + AT_rich Low_complexity Low_complexity 1 27 0 2318 98 3 3 chr12 10772639 10772936 -133509553 - AluSp SINE Alu -15 298 2 280 344 82 38 chr12 10773056 10773347 -133509142 - L2 LINE L2 -206 3107 2804 337 296 123 21 chr12 10773371 10773614 -133508875 - LTR33A LTR ERVL 0 523 256 1349 148 92 0 chr12 10773666 10773916 -133508573 + L1MB1 LINE L1 5895 6167 -1 22 0 0 0 chr12 10773916 10773938 -133508551 + AT_rich Low_complexity Low_complexity 1 22 0 331 274 43 8 chr12 10773979 10774096 -133508393 - LTR33A LTR ERVL -328 195 75 2115 101 3 37 chr12 10774274 10774603 -133507886 + AluSq SINE Alu 1 319 0 319 305 60 12 chr12 10774910 10775077 -133507412 + MER46C DNA MER2_type 159 333 -5 2386 72 14 0 chr12 10775083 10775376 -133507113 + AluSp SINE Alu 1 297 -16 242 351 81 22 chr12 10776728 10776913 -133505576 - MIR SINE MIR -18 244 49 837 161 0 29 chr12 10777052 10777189 -133505300 - FLAM_C SINE Alu 0 133 1 2170 103 10 0 chr12 10777239 10777531 -133504958 + AluSx SINE Alu 3 297 -15 2591 56 3 0 chr12 10778168 10778474 -133504015 + AluY SINE Alu 1 307 -4 1298 101 0 0 chr12 10778474 10778642 -133503847 + AluSg/x SINE Alu 134 301 -11 200 245 38 0 chr12 10778663 10778716 -133503773 + (TATG)n Simple_repeat Simple_repeat 3 57 0 352 289 100 28 chr12 10778898 10779078 -133503411 + MIR SINE MIR 60 252 -10 2207 98 7 0 chr12 10780162 10780457 -133502032 - AluSp SINE Alu -16 297 1 218 203 136 0 chr12 10780957 10781016 -133501473 + MIR SINE MIR 186 252 -10 329 242 111 0 chr12 10781028 10781127 -133501362 + L1MC5 LINE L1 6993 7102 -859 702 164 11 98 chr12 10781161 10781344 -133501145 + L1MD2 LINE L1 6083 6249 -110 12911 136 26 40 chr12 10781344 10782000 -133500489 - Tigger1 DNA MER2_type -1 2417 1753 2743 119 22 13 chr12 10782000 10782461 -133500028 - L1PA8 LINE L1 0 6172 5708 12911 136 26 40 chr12 10782461 10784253 -133498236 - Tigger1 DNA MER2_type -665 1753 5 2198 119 0 7 chr12 10784839 10785142 -133497347 - AluSx SINE Alu -11 301 1 406 261 9 92 chr12 10785286 10785504 -133496985 + L1ME3A LINE L1 5882 6081 -89 22 80 0 0 chr12 10785954 10786004 -133496485 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr12 10786443 10786464 -133496025 + AT_rich Low_complexity Low_complexity 1 21 0 2447 70 0 0 chr12 10786676 10786977 -133495512 + AluY SINE Alu 1 301 -10 37 23 0 0 chr12 10787847 10787891 -133494598 + AT_rich Low_complexity Low_complexity 1 44 0 25 65 0 0 chr12 10787946 10787992 -133494497 + AT_rich Low_complexity Low_complexity 1 46 0 3485 106 12 8 chr12 10788920 10789429 -133493060 + MER9 LTR ERVK 1 511 0 216 0 0 0 chr12 10789642 10789666 -133492823 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 9342 142 49 8 chr12 10789826 10791518 -133490971 - Tigger1 DNA MER2_type -1 2417 657 1734 259 62 14 chr12 10791537 10792098 -133490391 + LTR26 LTR ERV1 16 603 0 * 3040 178 45 14 chr12 10792098 10792738 -133489751 - Tigger1 DNA MER2_type -1758 660 1 2053 205 62 87 chr12 10792869 10793581 -133488908 - LTR8A LTR ERV1 0 727 34 234 217 36 72 chr12 10793741 10793824 -133488665 - LTR48 LTR ERV1 -128 659 580 843 186 116 28 chr12 10793953 10794168 -133488321 - MER34C LTR ERV1 -351 234 1 1725 136 66 0 chr12 10794888 10795146 -133487343 - AluSp SINE Alu -38 275 1 410 325 76 19 chr12 10795786 10796100 -133486389 - LTR16C LTR ERVL -4 487 156 2310 55 19 22 chr12 10796323 10796635 -133485854 + AluY SINE Alu 1 311 0 276 30 0 0 chr12 10796695 10796728 -133485761 + (TG)n Simple_repeat Simple_repeat 2 34 0 510 312 35 0 chr12 10797875 10798048 -133484441 + MIR SINE MIR 82 260 -2 340 331 38 19 chr12 10799317 10799474 -133483015 + MIR SINE MIR 29 188 -74 1934 100 7 52 chr12 10800559 10800868 -133481621 - AluSq SINE Alu -18 295 1 510 169 0 12 chr12 10800960 10801043 -133481446 + AluS SINE Alu 1 82 -231 24059 44 40 3 chr12 10801159 10804405 -133478084 - L1P LINE L1 -2162 3984 617 750 42 0 0 chr12 10804399 10804494 -133477995 - L1P LINE L1 -6048 98 4 * 4177 191 13 26 chr12 10804495 10805908 -133476581 - L1M2 LINE L1 -481 5810 4398 9011 97 9 3 chr12 10805908 10808075 -133474414 - L1PA8A LINE L1 0 6131 3951 480 283 6 0 chr12 10808327 10808504 -133473985 - L1P3 LINE L1 -5058 2526 2349 1537 33 0 0 chr12 10808505 10808688 -133473801 - L1PA5 LINE L1 0 6154 5972 401 0 0 0 chr12 10808688 10808734 -133473755 + L1PA5 LINE L1 5898 5943 -211 * 3504 157 10 11 chr12 10808732 10809378 -133473111 - L1MDb LINE L1 -4735 2263 990 277 174 151 0 chr12 10809387 10809473 -133473016 + L1MDb LINE L1 2259 2357 -5230 207 0 0 0 chr12 10809548 10809571 -133472918 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 620 116 0 0 chr12 10809580 10809666 -133472823 - AluSg/x SINE Alu -23 289 204 1803 116 0 8 chr12 10809666 10809916 -133472573 - AluSx SINE Alu -64 248 1 304 229 29 9 chr12 10810277 10810382 -133472107 + L1MDb LINE L1 2342 2448 -5139 3088 208 80 9 chr12 10810403 10811169 -133471320 + L1MD1 LINE L1 5423 6242 0 372 332 21 0 chr12 10811161 10811351 -133471138 + L1MDb LINE L1 2992 3185 -4580 * 24 41 0 20 chr12 10811484 10811504 -133470985 + AT_rich Low_complexity Low_complexity 1 20 -28 3075 115 4 10 chr12 10811504 10811984 -133470505 - L1PB1 LINE L1 0 6151 5675 24 41 0 20 chr12 10811984 10812012 -133470477 + AT_rich Low_complexity Low_complexity 20 48 0 842 47 0 9 chr12 10812012 10812119 -133470370 - L1PA8 LINE L1 -14 6158 6053 8409 134 30 5 chr12 10812119 10813121 -133469368 - L1P3 LINE L1 -5031 1430 383 255 31 0 0 chr12 10813121 10813153 -133469336 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 8409 134 30 5 chr12 10813153 10813541 -133468948 - L1P3 LINE L1 -6078 383 6 644 227 86 20 chr12 10813775 10814092 -133468397 + MSTD LTR MaLR 3 389 -7 3259 130 34 49 chr12 10814369 10814983 -133467506 - MER4E LTR ERV1 -174 605 1 4013 138 24 5 chr12 10815480 10816112 -133466377 - LTR9B LTR ERV1 0 644 1 1905 159 88 23 chr12 10816115 10816548 -133465941 - MER65C LTR ERV1 0 461 1 481 170 30 10 chr12 10816548 10816648 -133465841 - MLT1A2 LTR MaLR -272 102 1 3044 64 21 11 chr12 10816693 10817212 -133465277 + LTR10C LTR ERV1 1 591 0 587 223 98 74 chr12 10817238 10817494 -133464995 + LTR10C-int LTR ERV1 28 289 -6360 189 0 0 0 chr12 10817497 10817518 -133464971 + (A)n Simple_repeat Simple_repeat 1 21 0 267 229 48 29 chr12 10817661 10817766 -133464723 + LTR10C-int LTR ERV1 504 610 -6039 259 152 22 0 chr12 10817758 10817804 -133464685 + LTR10C-int LTR ERV1 975 1021 -5628 * 3085 107 31 2 chr12 10817885 10818364 -133464125 + LTR15 LTR ERV1 1 493 0 6393 151 66 45 chr12 10818364 10819973 -133462516 + HERV15 LTR ERV1 1 1387 -7039 2755 254 30 12 chr12 10819963 10820620 -133461869 + HERV15 LTR ERV1 1704 2372 -6054 * 2813 202 28 14 chr12 10820593 10821173 -133461316 + HERV15 LTR ERV1 3495 4082 -4344 * 3874 221 4 22 chr12 10821166 10821998 -133460491 + HERV15 LTR ERV1 4210 5026 -3400 3272 121 2 2 chr12 10821980 10822484 -133460005 + HERV15 LTR ERV1 8231 8734 -1 * 3196 98 21 0 chr12 10822484 10822951 -133459538 + LTR15 LTR ERV1 1 477 -16 223 258 0 15 chr12 10822974 10823040 -133459449 + GA-rich Low_complexity Low_complexity 3 67 0 303 202 0 0 chr12 10823417 10823501 -133458988 + GA-rich Low_complexity Low_complexity 1 84 0 1009 131 104 0 chr12 10823565 10823786 -133458703 + BaEV-int LTR ERV1 1919 2162 -4734 316 214 0 0 chr12 10824335 10824419 -133458070 + GA-rich Low_complexity Low_complexity 1 84 0 3206 111 46 5 chr12 10824483 10825086 -133457403 + BaEV-int LTR ERV1 1919 2546 -4350 3715 291 44 40 chr12 10825262 10826957 -133455532 + BaEV-int LTR ERV1 4363 6064 -585 3275 47 13 1 chr12 10827212 10827730 -133454759 + LTR10C LTR ERV1 1 591 0 1463 200 20 18 chr12 10827730 10828093 -133454396 - MLT1-int LTR MaLR -53 1682 946 467 252 0 0 chr12 10828298 10828409 -133454080 - MLT1-int LTR MaLR -944 791 681 225 171 0 0 chr12 10828539 10828580 -133453909 - MLT1-int LTR MaLR -640 731 691 27 0 0 0 chr12 10828865 10828892 -133453597 + AT_rich Low_complexity Low_complexity 1 27 0 204 97 0 0 chr12 10829157 10829188 -133453301 + (TG)n Simple_repeat Simple_repeat 1 31 0 1919 173 3 0 chr12 10829477 10829784 -133452705 - AluSx SINE Alu -4 308 1 1937 125 61 7 chr12 10829852 10830149 -133452340 - AluSq SINE Alu 0 313 1 356 362 26 18 chr12 10830758 10830987 -133451502 + MIR SINE MIR 18 248 -14 649 323 21 10 chr12 10831409 10831697 -133450792 + L1ME1 LINE L1 310 600 -5796 792 259 83 4 chr12 10831697 10832156 -133450333 + L1ME1 LINE L1 2739 3233 -2982 1261 254 78 85 chr12 10832167 10832275 -133450214 + L1ME1 LINE L1 5434 5541 -694 2100 124 0 0 chr12 10832275 10832587 -133449902 - AluSx SINE Alu 0 312 1 1261 254 78 85 chr12 10832587 10833276 -133449213 + L1ME1 LINE L1 5541 6226 -9 215 224 103 0 chr12 10833313 10833371 -133449118 + MIR SINE MIR 101 164 -98 1634 133 4 0 chr12 10834341 10834566 -133447923 + AluSx SINE Alu 1 226 -86 1002 116 0 0 chr12 10834566 10834704 -133447785 + AluSg/x SINE Alu 163 300 -10 2589 40 3 0 chr12 10835530 10835833 -133446656 - AluY SINE Alu -7 304 1 1963 246 64 76 chr12 10835904 10836690 -133445799 + L1M2b LINE L1 1 776 -6433 * 1969 161 28 28 chr12 10836674 10837096 -133445393 + L1M2b LINE L1 2759 3180 -4029 1048 311 38 46 chr12 10837096 10837656 -133444833 + L1MA5 LINE L1 23 577 -6988 3646 212 29 24 chr12 10837657 10839363 -133443126 + L1MA5 LINE L1 2582 4304 -3261 * 5276 156 39 13 chr12 10839357 10840829 -133441660 + L1MA5 LINE L1 5686 7221 -498 309 26 0 0 chr12 10840829 10840867 -133441622 + (CA)n Simple_repeat Simple_repeat 1 38 0 5276 156 39 13 chr12 10840867 10841379 -133441110 + L1MA5 LINE L1 7221 7718 -1 266 257 99 69 chr12 10841603 10841805 -133440684 - L1MC/D LINE L1 -2060 5748 5541 30 0 0 0 chr12 10842210 10842240 -133440249 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr12 10842941 10842969 -133439520 + AT_rich Low_complexity Low_complexity 1 28 0 1978 113 88 0 chr12 10843030 10843313 -133439176 - AluSx SINE Alu -4 308 1 524 118 0 0 chr12 10843478 10843563 -133438926 - L1PA14 LINE L1 -2 6159 6075 24 53 0 0 chr12 10843569 10843607 -133438882 + AT_rich Low_complexity Low_complexity 1 38 0 253 88 0 0 chr12 10844663 10844697 -133437792 + U2 snRNA snRNA 1 34 -154 185 81 0 54 chr12 10844818 10844855 -133437634 + (CAT)n Simple_repeat Simple_repeat 2 36 0 210 71 0 0 chr12 10845382 10845410 -133437079 + (CA)n Simple_repeat Simple_repeat 2 29 0 283 122 20 0 chr12 10845668 10845717 -133436772 + MADE1 DNA Mariner 1 50 -30 422 305 51 16 chr12 10845769 10846098 -133436391 + L1M4 LINE L1 4574 4920 -1226 25 0 0 0 chr12 10846143 10846168 -133436321 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr12 10846284 10846318 -133436171 + AT_rich Low_complexity Low_complexity 1 34 0 301 319 0 18 chr12 10846461 10846574 -133435915 - L2 LINE L2 -4 3309 3199 2309 105 0 7 chr12 10846579 10846883 -133435606 - AluSq SINE Alu -11 302 1 301 120 0 0 chr12 10850092 10850142 -133432347 + LTR5 LTR ERVK 1 50 -919 1050 228 51 92 chr12 10850143 10850651 -133431838 + LTR5 LTR ERVK 483 969 0 492 250 52 23 chr12 10851076 10851248 -133431241 + LTR41 LTR ERVL 1 177 -596 180 304 71 45 chr12 10851427 10851539 -133430950 - L3 LINE CR1 -214 1363 1249 1474 165 69 0 chr12 10851715 10851975 -133430514 + AluSx SINE Alu 16 293 -19 316 269 29 76 chr12 10852734 10852905 -133429584 + L1M4 LINE L1 78 240 -6302 2339 148 14 50 chr12 10853210 10853711 -133428778 - L1MA6 LINE L1 0 6300 5818 279 0 0 0 chr12 10853824 10853855 -133428634 + (CA)n Simple_repeat Simple_repeat 1 31 0 23 0 0 0 chr12 10853973 10853996 -133428493 + AT_rich Low_complexity Low_complexity 1 23 0 529 288 55 18 chr12 10854111 10854546 -133427943 + L1M4 LINE L1 1026 1480 -5062 25 31 0 0 chr12 10854807 10854839 -133427650 + AT_rich Low_complexity Low_complexity 1 32 0 21 95 0 0 chr12 10855620 10855683 -133426806 + AT_rich Low_complexity Low_complexity 1 63 0 1484 158 55 28 chr12 10855805 10856059 -133426430 - AluJo SINE Alu -51 261 1 39 0 0 0 chr12 10856232 10856271 -133426218 + AT_rich Low_complexity Low_complexity 1 39 0 2319 115 3 0 chr12 10856469 10856773 -133425716 + AluSx SINE Alu 1 305 -7 626 238 33 33 chr12 10856781 10856962 -133425527 - MLT1E1 LTR MaLR -469 185 5 1742 178 6 16 chr12 10857021 10857336 -133425153 - AluJb SINE Alu 0 312 1 186 43 0 0 chr12 10857400 10857423 -133425066 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 3638 45 2 0 chr12 10857423 10857889 -133424600 - L1PA8 LINE L1 -24 6148 5682 2397 126 114 7 chr12 10857948 10858353 -133424136 + MER83 LTR ERV1 1 448 0 2447 141 0 3 chr12 10858357 10858733 -133423756 - THE1C LTR MaLR 0 375 1 2404 66 3 3 chr12 10859197 10859500 -133422989 + AluY SINE Alu 1 303 -8 799 251 38 0 chr12 10859614 10859825 -133422664 - MER58A DNA MER1_type 0 224 6 1676 243 36 60 chr12 10860004 10860492 -133421997 + MLT1F LTR MaLR 1 476 -66 2244 102 7 7 chr12 10860492 10860797 -133421692 - AluSx SINE Alu -3 309 5 1676 243 36 60 chr12 10860797 10860863 -133421626 + MLT1F LTR MaLR 476 542 0 426 320 27 20 chr12 10860979 10861273 -133421216 + MLT1F-int LTR MaLR 286 581 -790 339 270 98 78 chr12 10861804 10862100 -133420389 + MLT1F-int LTR MaLR 1055 1356 -15 1574 249 47 38 chr12 10862117 10862650 -133419839 + MLT1F LTR MaLR 5 542 0 2091 135 0 0 chr12 10862687 10862983 -133419506 - AluSx SINE Alu -16 296 1 252 327 9 18 chr12 10863153 10863266 -133419223 - HAL1 LINE L1 -586 1921 1810 1349 284 69 33 chr12 10863319 10864135 -133418354 - L1ME3 LINE L1 -2 6160 5316 624 253 65 27 chr12 10864150 10864486 -133418003 - L1ME1 LINE L1 -9 6157 5809 2137 147 0 0 chr12 10864486 10864798 -133417691 - AluSx SINE Alu 0 312 1 2280 160 10 2 chr12 10864869 10865276 -133417213 - L1PA15 LINE L1 -1 6164 5755 917 235 50 87 chr12 10865297 10865915 -133416574 - L1ME1 LINE L1 -1669 4477 3883 2258 199 28 8 chr12 10865998 10866908 -133415581 - L1MB1 LINE L1 -1 6167 5193 265 206 0 15 chr12 10866926 10866994 -133415495 - MER4A LTR ERV1 0 664 598 296 143 20 0 chr12 10867114 10867163 -133415326 - MER4A LTR ERV1 -354 310 261 529 124 21 10 chr12 10867163 10867260 -133415229 - MER4A LTR ERV1 -566 98 1 6115 252 67 13 chr12 10867260 10869104 -133413385 - L1 LINE L1 -967 5003 2839 2129 134 30 33 chr12 10869104 10869469 -133413020 - THE1B LTR MaLR 0 364 1 6115 252 67 13 chr12 10869469 10870223 -133412266 - L1 LINE L1 -3131 2839 2127 1443 300 72 25 chr12 10870232 10870898 -133411591 - L1 LINE L1 -5194 697 1 244 188 59 0 chr12 10870910 10870995 -133411494 + (TA)n Simple_repeat Simple_repeat 1 90 0 531 360 45 11 chr12 10872521 10872962 -133409527 + L1M4 LINE L1 2274 2729 -3417 550 221 9 0 chr12 10873033 10873146 -133409343 - Tigger2 DNA MER2_type -10 2708 2595 3466 57 0 11 chr12 10873352 10873805 -133408684 - LTR7 LTR ERV1 -2 448 1 2415 66 48 13 chr12 10873805 10874182 -133408307 - HERVH LTR ERV1 0 7713 7324 1376 116 19 0 chr12 10874182 10874398 -133408091 - HERVH LTR ERV1 -1894 5819 5600 2898 147 0 6 chr12 10874399 10874997 -133407492 - HERVH LTR ERV1 -2564 5149 4488 3207 109 0 4 chr12 10874999 10875495 -133406994 - HERVH LTR ERV1 -3720 3993 3500 720 159 41 0 chr12 10875494 10875639 -133406850 - HERVH LTR ERV1 -4423 3290 3140 * 18861 94 29 11 chr12 10875633 10878567 -133403922 - HERVH LTR ERV1 -4726 2987 1 3396 55 4 11 chr12 10878569 10879020 -133403469 - LTR7 LTR ERV1 -2 448 1 1815 133 40 37 chr12 10879717 10880017 -133402472 - AluSx SINE Alu -11 301 1 1229 270 70 41 chr12 10880517 10880824 -133401665 - L1ME3 LINE L1 0 6162 5865 6409 93 12 24 chr12 10880824 10881922 -133400567 - L1PA11 LINE L1 -7 6167 5069 1229 270 70 41 chr12 10881922 10882196 -133400293 - L1ME3 LINE L1 -297 5865 5564 2820 128 9 9 chr12 10882247 10882706 -133399783 + LOR1a LTR ERV1 2 460 -37 257 231 104 22 chr12 10882804 10882938 -133399551 - L1M2 LINE L1 -853 5447 5303 359 268 3 86 chr12 10883018 10883155 -133399334 - L1ME3 LINE L1 -1540 4606 4506 2496 59 0 7 chr12 10883155 10883459 -133399030 - AluY SINE Alu -9 302 1 359 268 3 86 chr12 10883459 10883623 -133398866 - L1ME3 LINE L1 -1640 4506 4330 369 199 119 26 chr12 10883638 10883789 -133398700 - L1MA10 LINE L1 0 6334 6170 347 404 63 9 chr12 10883891 10884144 -133398345 - L1ME LINE L1 -5573 497 230 25 31 0 0 chr12 10884220 10884252 -133398237 + AT_rich Low_complexity Low_complexity 1 32 0 780 168 46 5 chr12 10884253 10884449 -133398040 - L1MA7 LINE L1 -7 6284 6081 1659 156 9 32 chr12 10884553 10884899 -133397590 - L1MA7 LINE L1 -158 6133 5796 22 0 0 0 chr12 10884911 10884933 -133397556 + AT_rich Low_complexity Low_complexity 1 22 0 11972 25 3 0 chr12 10884933 10887146 -133395343 - L1PA3 LINE L1 0 6155 3978 534 293 67 0 chr12 10887305 10887469 -133395020 - MIR SINE MIR -48 214 40 2135 95 0 30 chr12 10887475 10887780 -133394709 + AluSx SINE Alu 5 300 -12 812 213 6 29 chr12 10887864 10888038 -133394451 - AluJo/FRAM SINE Alu -11 301 132 1561 201 4 0 chr12 10888039 10888313 -133394176 - AluJo SINE Alu -7 305 31 1507 168 0 15 chr12 10888549 10888811 -133393678 - AluJo SINE Alu -54 258 1 2314 145 67 48 chr12 10888904 10889490 -133392999 - L1MB8 LINE L1 -9 6169 5573 9871 193 35 6 chr12 10889722 10889999 -133392490 - L1PA12 LINE L1 -2172 5412 5145 2015 110 43 3 chr12 10889999 10890281 -133392208 - AluSc SINE Alu -16 293 1 9871 193 35 6 chr12 10890281 10892879 -133389610 - L1PA12 LINE L1 -2439 5145 2442 9632 105 25 2 chr12 10892884 10894481 -133388008 - L1P3 LINE L1 -702 5767 4151 8543 140 18 22 chr12 10894476 10895936 -133386553 - L1P3 LINE L1 -4979 1482 29 * 4065 249 26 12 chr12 10895947 10897378 -133385111 - L1PA12 LINE L1 -3745 3839 2302 600 325 35 89 chr12 10897371 10898583 -133383906 - L1PA12 LINE L1 -5502 2079 182 * 2300 251 95 20 chr12 10898576 10899277 -133383212 + L1 LINE L1 2698 3345 -4220 2189 145 16 26 chr12 10899277 10899656 -133382833 + THE1C LTR MaLR 1 375 0 2300 251 95 20 chr12 10899656 10900544 -133381945 + L1 LINE L1 3345 4409 -3156 3435 242 39 16 chr12 10900657 10901755 -133380734 + L1 LINE L1 5416 6538 -1027 30107 115 13 59 chr12 10901767 10908208 -133374281 + L1PA7 LINE L1 12 6141 -13 2100 123 3 10 chr12 10908975 10909283 -133373206 - AluSx SINE Alu -6 306 1 740 266 188 7 chr12 10909303 10909596 -133372893 - MLT1F1 LTR MaLR -3 564 219 232 191 21 0 chr12 10909625 10909672 -133372817 + GA-rich Low_complexity Low_complexity 1 48 0 227 227 27 53 chr12 10909683 10909758 -133372731 - MLT1F1 LTR MaLR -566 88 16 544 304 78 14 chr12 10910252 10910611 -133371878 + L1ME4a LINE L1 5494 5875 -246 1826 151 0 7 chr12 10910821 10911112 -133371377 + AluSx SINE Alu 1 289 -23 1581 186 0 55 chr12 10911189 10911516 -133370973 + AluJo SINE Alu 1 309 -3 226 406 105 0 chr12 10911517 10911650 -133370839 - L2 LINE L2 -3 3269 3123 3364 145 40 0 chr12 10911887 10912479 -133370010 - Tigger3b DNA MER2_type -615 616 1 25 75 0 0 chr12 10912568 10912621 -133369868 + AT_rich Low_complexity Low_complexity 1 53 0 2159 194 37 71 chr12 10912717 10913280 -133369209 + MLT2B3 LTR ERVL 4 547 -7 527 269 0 0 chr12 10913677 10913796 -133368693 - MLT1A1 LTR MaLR -2 363 245 24 77 0 0 chr12 10913961 10914013 -133368476 + AT_rich Low_complexity Low_complexity 1 52 0 4481 118 4 13 chr12 10914120 10914831 -133367658 + L1MA2 LINE L1 5600 6304 0 249 154 26 64 chr12 10915349 10915427 -133367062 - MER3 DNA MER1_type -82 127 100 360 283 82 0 chr12 10915467 10915626 -133366863 + L1M4 LINE L1 4204 4375 -3190 354 278 59 30 chr12 10915716 10915885 -133366604 + L1M4 LINE L1 4492 4665 -2900 24 32 0 0 chr12 10915909 10915940 -133366549 + AT_rich Low_complexity Low_complexity 1 31 0 277 191 0 0 chr12 10915962 10916021 -133366468 - Alu SINE Alu -256 47 1 463 301 112 47 chr12 10916096 10916442 -133366047 + L1M4 LINE L1 4805 5127 -2438 2122 123 0 0 chr12 10916442 10916743 -133365746 - AluSc SINE Alu -8 301 1 463 301 112 47 chr12 10916743 10917556 -133364933 + L1M4 LINE L1 5127 6039 -1526 1012 266 11 7 chr12 10917562 10917840 -133364649 - L1MB7 LINE L1 -11 6173 5895 230 238 0 16 chr12 10919082 10919145 -133363344 + L1MA10 LINE L1 461 522 -6967 4381 208 90 7 chr12 10919151 10920534 -133361955 + L1MA10 LINE L1 6242 7749 -4 1600 157 68 0 chr12 10920565 10920858 -133361631 + L1MB2 LINE L1 5817 6129 -42 1753 185 71 19 chr12 10920893 10921261 -133361228 + L1MC1 LINE L1 5902 6288 -45 592 251 50 32 chr12 10921263 10921482 -133361007 + L1M4 LINE L1 6180 6402 -1163 4340 161 56 5 chr12 10921489 10922445 -133360044 + L1PA15 LINE L1 5161 6160 -5 29 0 0 0 chr12 10922540 10922569 -133359920 + AT_rich Low_complexity Low_complexity 1 29 0 430 291 157 22 chr12 10922645 10923009 -133359480 + L1 LINE L1 2227 2639 -3507 232 179 45 0 chr12 10923179 10923246 -133359243 - MER3 DNA MER1_type -87 122 100 322 312 65 0 chr12 10923275 10923445 -133359044 + L1 LINE L1 2778 2958 -3188 306 289 78 58 chr12 10923521 10924060 -133358429 + L1 LINE L1 3080 3629 -2517 388 329 101 39 chr12 10924127 10924483 -133358006 + L1 LINE L1 3763 4140 -2006 1807 145 65 6 chr12 10924484 10924821 -133357668 + L1 LINE L1 4578 4934 -1212 2659 202 13 13 chr12 10924841 10925375 -133357114 - MER44D DNA MER2_type -1 604 16 27 73 0 0 chr12 10925626 10925681 -133356808 + AT_rich Low_complexity Low_complexity 1 55 0 1531 292 72 8 chr12 10926210 10926720 -133355769 + L1MDb LINE L1 14 556 -5853 555 280 111 30 chr12 10926752 10927084 -133355405 + L1ME3A LINE L1 5804 6162 -8 310 285 62 36 chr12 10927077 10927270 -133355219 + L1ME3A LINE L1 5689 5886 -284 * 22 0 0 0 chr12 10927572 10927594 -133354895 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 10928128 10928151 -133354338 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr12 10929540 10929568 -133352921 + AT_rich Low_complexity Low_complexity 1 28 0 311 321 176 14 chr12 10930114 10930335 -133352154 + MIR SINE MIR 3 259 -3 1454 64 35 10 chr12 10931072 10931274 -133351215 + AluY SINE Alu 98 304 -7 21 0 0 0 chr12 10931697 10931718 -133350771 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 10931912 10931933 -133350556 + AT_rich Low_complexity Low_complexity 1 21 0 1251 161 13 25 chr12 10932172 10932408 -133350081 + AluJb SINE Alu 4 236 -76 289 138 25 50 chr12 10932734 10932814 -133349675 - MER3 DNA MER1_type -79 130 100 434 294 90 54 chr12 10933115 10933297 -133349192 + L1M4 LINE L1 3389 3563 -2583 2818 43 0 0 chr12 10933297 10933643 -133348846 - L1PA6 LINE L1 -1 6153 5808 434 294 90 54 chr12 10933643 10933903 -133348586 + L1M4 LINE L1 3563 3847 -2299 503 245 143 98 chr12 10934136 10934238 -133348251 + L1M4 LINE L1 4106 4202 -1944 1674 30 0 0 chr12 10934238 10934441 -133348048 + L1PA4 LINE L1 5953 6155 0 503 245 143 98 chr12 10934441 10934819 -133347670 + L1M4 LINE L1 4202 4608 -1538 976 266 14 11 chr12 10934843 10935121 -133347368 - L1MB7 LINE L1 -11 6173 5895 1479 161 46 52 chr12 10935620 10935904 -133346585 - MER44D DNA MER2_type -1882 605 267 1476 96 45 0 chr12 10935904 10936124 -133346365 - MER30 DNA MER1_type 0 230 1 1479 161 46 52 chr12 10936124 10936168 -133346321 - MER44D DNA MER2_type -2220 267 224 1401 257 110 14 chr12 10936909 10937400 -133345089 + L1MDb LINE L1 15 552 -5857 21 36 0 0 chr12 10937942 10937970 -133344519 + AT_rich Low_complexity Low_complexity 1 28 0 3655 193 14 0 chr12 10938744 10939449 -133343040 + L1PA16 LINE L1 5447 6161 -5 26 0 0 0 chr12 10941017 10941043 -133341446 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr12 10942044 10942080 -133340409 + AT_rich Low_complexity Low_complexity 1 36 0 962 249 138 7 chr12 10942501 10942904 -133339585 - L1M4c LINE L1 -3649 2733 2276 248 150 0 0 chr12 10942914 10942954 -133339535 - Alu SINE Alu -20 282 243 3748 199 22 50 chr12 10942954 10944273 -133338216 - L1P3 LINE L1 -4280 2181 842 894 237 75 13 chr12 10944275 10944583 -133337906 - L1M4c LINE L1 -4759 1625 1299 2401 43 0 0 chr12 10944611 10944920 -133337569 + AluY SINE Alu 1 309 0 298 305 34 0 chr12 10944937 10945055 -133337434 - L1M4 LINE L1 -2579 3455 3334 7111 185 10 15 chr12 10945307 10947480 -133335009 + L1PA14 LINE L1 3991 6160 -1 4743 191 11 9 chr12 10947477 10948156 -133334333 + L1PA16 LINE L1 4243 4919 -1247 1899 225 47 64 chr12 10948156 10948779 -133333710 - LTR9 LTR ERV1 0 612 1 4743 191 11 9 chr12 10948779 10949915 -133332574 + L1PA16 LINE L1 4919 6059 -107 448 58 0 14 chr12 10949918 10949987 -133332502 + L1PA16 LINE L1 6099 6166 0 393 233 15 15 chr12 10949965 10950098 -133332391 + L1 LINE L1 5029 5161 -985 * 2156 262 37 17 chr12 10950120 10951175 -133331314 - L1M4 LINE L1 -4516 1449 445 217 354 152 0 chr12 10951266 10951365 -133331124 + MIR SINE MIR 32 145 -63 231 336 3 25 chr12 10951514 10951695 -133330794 + C-rich Low_complexity Low_complexity 1 309 0 641 287 99 14 chr12 10952048 10952271 -133330218 - L1ME LINE L1 -405 5765 5524 2177 117 0 0 chr12 10952278 10952576 -133329913 + AluSx SINE Alu 1 298 -14 23 0 0 0 chr12 10952646 10952669 -133329820 + AT_rich Low_complexity Low_complexity 1 23 0 196 328 67 118 chr12 10952723 10953577 -133328912 + L2 LINE L2 2003 2812 -502 282 296 14 0 chr12 10953917 10953988 -133328501 + L2 LINE L2 3200 3271 -1 352 287 13 20 chr12 10954318 10954468 -133328021 + (TA)n Simple_repeat Simple_repeat 1 149 0 54 0 0 0 chr12 10954541 10954595 -133327894 + AT_rich Low_complexity Low_complexity 1 54 0 22500 40 8 1 chr12 10955095 10956010 -133326479 - L1P LINE L1 -1931 4215 3307 222 37 0 0 chr12 10956010 10956037 -133326452 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 22500 40 8 1 chr12 10956037 10956232 -133326257 - L1P LINE L1 -2839 3307 3115 2173 105 10 0 chr12 10956232 10956528 -133325961 - AluY SINE Alu -11 300 2 22500 40 8 1 chr12 10956528 10958231 -133324258 - L1P LINE L1 -3031 3115 1383 1973 204 67 10 chr12 10958350 10958855 -133323634 + L1MA10 LINE L1 4530 5063 -1083 4429 131 5 25 chr12 10958951 10959705 -133322784 - L1PA16 LINE L1 -14 6152 5414 833 159 78 65 chr12 10959710 10959942 -133322547 - L1 LINE L1 -1339 4807 4573 3662 164 63 94 chr12 10959974 10960445 -133322044 + L1MA10 LINE L1 5114 5598 -736 486 83 0 0 chr12 10960445 10960517 -133321972 + (TA)n Simple_repeat Simple_repeat 2 73 0 3662 164 63 94 chr12 10960517 10961318 -133321171 + L1MA10 LINE L1 5598 6333 -1 26 0 0 0 chr12 10961414 10961440 -133321049 + AT_rich Low_complexity Low_complexity 1 26 0 191 36 36 0 chr12 10963611 10963639 -133318850 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1631 126 61 4 chr12 10963640 10963901 -133318588 - AluSx SINE Alu -36 276 1 240 35 0 0 chr12 10964540 10964569 -133317920 + (A)n Simple_repeat Simple_repeat 1 29 0 21 36 0 0 chr12 10965504 10965532 -133316957 + AT_rich Low_complexity Low_complexity 1 28 0 38 43 0 0 chr12 10965823 10965870 -133316619 + AT_rich Low_complexity Low_complexity 1 47 0 180 111 0 0 chr12 10966371 10966398 -133316091 + (TTG)n Simple_repeat Simple_repeat 2 28 0 402 320 55 47 chr12 10966419 10966781 -133315708 + L2 LINE L2 2129 2493 -821 1791 153 3 3 chr12 10966810 10967092 -133315397 - AluJb SINE Alu -30 282 1 337 372 46 25 chr12 10967390 10967586 -133314903 + L2 LINE L2 3073 3272 0 272 343 57 0 chr12 10967591 10967696 -133314793 - L2 LINE L2 -4 3309 3199 2839 9 0 0 chr12 10968099 10968414 -133314075 + AluYb8 SINE Alu 1 315 -3 3376 249 75 6 chr12 10968972 10970168 -133312321 - L1MCc LINE L1 -2377 4564 3286 1832 135 52 40 chr12 10970168 10970710 -133311779 + MER51A LTR ERV1 1 634 0 298 212 62 26 chr12 10970715 10970828 -133311661 - L1MCc LINE L1 -3650 3291 3175 511 271 52 40 chr12 10970916 10971374 -133311115 - L1MCc LINE L1 -4887 1536 1297 684 293 48 0 chr12 10971421 10971629 -133310860 - L1MCc LINE L1 -5232 1191 974 881 279 73 11 chr12 10971859 10972296 -133310193 - L1MEc LINE L1 -3138 3077 2614 * 1887 161 42 0 chr12 10972270 10972623 -133309866 + L1MA4A LINE L1 5914 6281 -22 1016 270 77 18 chr12 10972657 10973309 -133309180 - L1MEc LINE L1 -3596 2619 1965 339 262 55 86 chr12 10973354 10973601 -133308888 - L1MEc LINE L1 -5096 1300 1062 2086 108 24 0 chr12 10973601 10973889 -133308600 - AluSp SINE Alu -14 299 5 339 262 55 86 chr12 10973889 10973931 -133308558 - L1MEc LINE L1 -5334 1062 1020 7913 211 19 7 chr12 10973974 10975826 -133306663 + L1 LINE L1 2725 4599 -1547 2301 243 7 3 chr12 10975814 10976379 -133306110 - L1MA8 LINE L1 -318 5973 5407 * 7793 18 0 0 chr12 10976480 10977817 -133304672 + L1PA3 LINE L1 4814 6152 -3 243 339 62 27 chr12 10978275 10978499 -133303990 + Charlie8 DNA MER1_type 32 263 -2154 235 177 25 114 chr12 10978691 10978770 -133303719 - MIR SINE MIR -64 144 73 205 200 0 0 chr12 10978785 10978825 -133303664 + (TA)n Simple_repeat Simple_repeat 2 41 0 324 340 111 19 chr12 10979166 10979328 -133303161 + MIR3 SINE MIR 20 196 -12 826 213 0 0 chr12 10979483 10979638 -133302851 + FRAM SINE Alu 1 153 -23 23 0 0 0 chr12 10979638 10979661 -133302828 + AT_rich Low_complexity Low_complexity 1 23 0 553 284 90 9 chr12 10979903 10980114 -133302375 + MLT1L LTR MaLR 167 394 -221 192 200 0 0 chr12 10980248 10980293 -133302196 + (TA)n Simple_repeat Simple_repeat 2 46 0 26 74 0 0 chr12 10980402 10980456 -133302033 + AT_rich Low_complexity Low_complexity 1 54 0 747 265 67 36 chr12 10983143 10983366 -133299123 + MIR SINE MIR 18 247 -15 24 32 0 0 chr12 10983685 10983716 -133298773 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr12 10984061 10984089 -133298400 + AT_rich Low_complexity Low_complexity 1 28 0 971 273 11 7 chr12 10985173 10985451 -133297038 - L1MB7 LINE L1 -11 6173 5895 1572 169 24 39 chr12 10985947 10986240 -133296249 - MER44D DNA MER2_type -1883 604 260 1382 85 66 0 chr12 10986240 10986452 -133296037 - MER30 DNA MER1_type 0 230 5 1572 169 24 39 chr12 10986452 10986489 -133296000 - MER44D DNA MER2_type -2227 260 224 1625 249 62 15 chr12 10987231 10987750 -133294739 + L1MDb LINE L1 14 556 -5853 603 263 66 38 chr12 10987779 10988068 -133294421 + L1ME3A LINE L1 5799 6095 -75 369 296 41 41 chr12 10988134 10988330 -133294159 + L1ME3A LINE L1 5691 5886 -284 22 35 0 0 chr12 10989011 10989040 -133293449 + AT_rich Low_complexity Low_complexity 1 29 0 685 203 34 82 chr12 10989507 10989669 -133292820 - MER44D DNA MER2_type -2012 475 269 1379 107 70 0 chr12 10989669 10989884 -133292605 - MER30 DNA MER1_type 0 230 1 685 203 34 82 chr12 10989884 10989928 -133292561 - MER44D DNA MER2_type -2218 269 224 21 0 0 0 chr12 10990055 10990076 -133292413 + AT_rich Low_complexity Low_complexity 1 21 0 1425 254 108 30 chr12 10990672 10991171 -133291318 + L1MDb LINE L1 15 552 -5857 468 283 71 50 chr12 10991209 10991492 -133290997 + L1ME3A LINE L1 5807 6095 -75 23 54 0 0 chr12 10992633 10992670 -133289819 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr12 10993040 10993076 -133289413 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr12 10995396 10995417 -133287072 + AT_rich Low_complexity Low_complexity 1 21 0 258 289 213 25 chr12 10995687 10995884 -133286605 + MIR SINE MIR 26 259 -3 22 0 0 0 chr12 10996163 10996185 -133286304 + AT_rich Low_complexity Low_complexity 1 22 0 1276 175 61 54 chr12 10997507 10997634 -133284855 + AluJb SINE Alu 3 128 -184 216 0 0 0 chr12 10997634 10997658 -133284831 + (TA)n Simple_repeat Simple_repeat 2 25 0 1276 175 61 54 chr12 10997658 10997827 -133284662 + AluJb SINE Alu 128 301 -11 1948 101 0 11 chr12 10997950 10998218 -133284271 - AluSg SINE Alu -45 265 1 21 71 0 0 chr12 10998335 10998377 -133284112 + AT_rich Low_complexity Low_complexity 1 42 0 5621 166 55 7 chr12 10998638 10999803 -133282686 - Tigger3b DNA MER2_type -10 1221 1 831 148 0 16 chr12 11000858 11000986 -133281503 - AluJb SINE Alu -185 127 2 30 83 0 0 chr12 11001078 11001150 -133281339 + AT_rich Low_complexity Low_complexity 1 72 0 22 70 0 0 chr12 11002697 11002740 -133279749 + AT_rich Low_complexity Low_complexity 1 43 0 2530 165 78 0 chr12 11002996 11003499 -133278990 - L1 LINE L1 -922 5224 4683 259 258 0 0 chr12 11003512 11003578 -133278911 + L1M3 LINE L1 5370 5435 -748 * 1108 185 52 43 chr12 11003558 11003651 -133278838 + L1M2 LINE L1 2698 2789 -4059 990 62 0 42 chr12 11003651 11003795 -133278694 + L1PA10 LINE L1 6022 6159 -9 1108 185 52 43 chr12 11003795 11004147 -133278342 + L1M2 LINE L1 2789 3143 -3705 1305 193 73 0 chr12 11004157 11004432 -133278057 - MER2 DNA MER2_type 0 345 51 232 250 0 0 chr12 11004440 11004492 -133277997 + LTR30 LTR ERV1 1 52 -670 1784 155 114 49 chr12 11004492 11005160 -133277329 + pTR5 LTR ERV1 57 2032 -406 292 232 0 0 chr12 11005165 11005234 -133277255 + LTR30 LTR ERV1 556 624 -98 366 369 0 0 chr12 11005435 11005611 -133276878 + C-rich Low_complexity Low_complexity 1 176 0 263 308 17 41 chr12 11005581 11005753 -133276736 + CT-rich Low_complexity Low_complexity 2 169 0 * 188 88 29 0 chr12 11006236 11006270 -133276219 - L2 LINE L2 -1 3312 3278 406 282 81 38 chr12 11007066 11007463 -133275026 - HAL1b LINE L1 -149 1199 786 1429 238 134 10 chr12 11007812 11008334 -133274155 + L1MCc LINE L1 23 609 -5814 1396 187 21 32 chr12 11008526 11008810 -133273679 - AluJo SINE Alu -30 282 2 1979 124 35 3 chr12 11008820 11009110 -133273379 - AluSc SINE Alu -10 299 1 304 302 92 49 chr12 11009187 11009492 -133272997 + L1ME4a LINE L1 5734 6051 -70 214 313 16 0 chr12 11009611 11009675 -133272814 + L2 LINE L2 3206 3270 -2 23 54 0 0 chr12 11009727 11009764 -133272725 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr12 11010228 11010260 -133272229 + AT_rich Low_complexity Low_complexity 1 32 0 2240 88 3 0 chr12 11012141 11012437 -133270052 + AluY SINE Alu 1 297 -14 47 0 0 0 chr12 11012784 11012831 -133269658 + AT_rich Low_complexity Low_complexity 1 47 0 297 288 68 25 chr12 11013132 11013250 -133269239 + MIR SINE MIR 26 148 -114 189 0 0 0 chr12 11013924 11013945 -133268544 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 8089 126 27 8 chr12 11013945 11015194 -133267295 + L1P LINE L1 4 1276 -4870 3427 199 16 28 chr12 11015344 11016198 -133266291 - L1 LINE L1 -1741 4405 3562 2636 104 17 26 chr12 11016221 11016567 -133265922 - L1PB2 LINE L1 -6 6145 5802 318 50 0 0 chr12 11016567 11016607 -133265882 + (TG)n Simple_repeat Simple_repeat 2 41 0 2636 104 17 26 chr12 11016607 11016682 -133265807 - L1PB2 LINE L1 -349 5802 5728 229 395 151 6 chr12 11017748 11017920 -133264569 - MIR3 SINE MIR -4 204 8 253 288 56 56 chr12 11017970 11018095 -133264394 + L2 LINE L2 2880 3004 -268 185 307 53 79 chr12 11018112 11018226 -133264263 - L2 LINE L2 0 3272 3162 196 306 0 0 chr12 11018236 11018285 -133264204 + L2 LINE L2 3004 3052 -220 315 247 0 54 chr12 11018348 11018441 -133264048 - L1MC4 LINE L1 -1342 6700 6613 23 33 0 0 chr12 11018452 11018482 -133264007 + AT_rich Low_complexity Low_complexity 1 30 0 291 222 0 0 chr12 11018835 11018916 -133263573 + (TA)n Simple_repeat Simple_repeat 1 81 0 2355 199 13 68 chr12 11018932 11019459 -133263030 - MLT2B3 LTR ERVL -54 500 3 193 176 226 49 chr12 11019533 11019635 -133262854 + L2 LINE L2 3193 3312 -1 1711 183 3 0 chr12 11020066 11020350 -133262139 - AluJb SINE Alu -27 285 1 300 305 91 27 chr12 11021048 11021235 -133261254 - L1ME LINE L1 -684 5478 5280 8735 197 15 46 chr12 11021329 11023859 -133258630 - L1PA16 LINE L1 -107 6059 3451 2365 126 31 8 chr12 11023859 11024215 -133258274 + THE1B LTR MaLR 1 364 0 11628 98 6 1 chr12 11024215 11025787 -133256702 + THE1B-int LTR MaLR 1 1580 0 2199 131 34 20 chr12 11025787 11026145 -133256344 + THE1B LTR MaLR 1 363 -1 8735 197 15 46 chr12 11026145 11026755 -133255734 - L1PA16 LINE L1 -2712 3454 3023 9438 173 72 50 chr12 11026760 11027853 -133254636 - L1 LINE L1 -897 6668 5601 595 98 11 0 chr12 11027853 11027945 -133254544 + AluSg/x SINE Alu 217 309 0 9438 173 72 50 chr12 11027945 11029103 -133253386 - L1 LINE L1 -1964 5601 4274 4876 119 25 12 chr12 11029219 11030053 -133252436 - L1 LINE L1 -4247 3318 2474 802 259 0 71 chr12 11030054 11030336 -133252153 - L1MD3 LINE L1 -26 7969 7708 24 0 0 0 chr12 11030812 11030836 -133251653 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr12 11031449 11031472 -133251017 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 11032345 11032366 -133250123 + AT_rich Low_complexity Low_complexity 1 21 0 898 231 11 0 chr12 11033402 11033584 -133248905 + MER5A DNA MER1_type 6 189 0 2469 133 81 7 chr12 11033795 11034253 -133248236 - L1MA9 LINE L1 0 6312 5821 5179 64 1 1 chr12 11034963 11036148 -133246341 + L1PA5 LINE L1 4718 5902 -252 5908 17 16 0 chr12 11036281 11036986 -133245503 - L1P LINE L1 -3295 2851 2136 3742 18 7 2 chr12 11036986 11037442 -133245047 + L1P LINE L1 4247 4704 -1442 338 188 0 0 chr12 11037552 11037616 -133244873 - MER4B LTR ERV1 -546 64 1 398 299 118 33 chr12 11037790 11038001 -133244488 - L3 LINE CR1 -7 1570 1342 21 57 0 0 chr12 11038883 11038918 -133243571 + GC_rich Low_complexity Low_complexity 1 35 0 3913 126 6 14 chr12 11039239 11039890 -133242599 + L1MA2 LINE L1 5659 6304 0 221 91 0 0 chr12 11040583 11040616 -133241873 + (G)n Simple_repeat Simple_repeat 1 33 0 185 62 0 31 chr12 11040860 11040892 -133241597 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 2381 166 25 37 chr12 11041326 11041814 -133240675 - LTR5 LTR ERVK 0 969 488 356 317 12 18 chr12 11042108 11042272 -133240217 + AluSg/x SINE Alu 138 300 0 3033 176 21 5 chr12 11043503 11044316 -133238173 - L1M3a LINE L1 -3322 4243 3422 1830 168 0 3 chr12 11044318 11044631 -133237858 - AluSx SINE Alu 0 312 1 1012 104 0 0 chr12 11044632 11044766 -133237723 - AluSq/x SINE Alu -179 134 1 208 346 109 10 chr12 11044925 11045026 -133237463 - MIR SINE MIR -150 112 2 229 336 69 9 chr12 11045620 11045736 -133236753 - L1M3a LINE L1 -5170 2316 2194 1348 341 9 5 chr12 11045900 11046348 -133236141 - L1M3a LINE L1 -5505 1981 1532 25 0 0 0 chr12 11047909 11047934 -133234555 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr12 11048489 11048526 -133233963 + AT_rich Low_complexity Low_complexity 1 37 0 1597 114 35 38 chr12 11049855 11050144 -133232345 - SVA Other Other -1098 288 1 307 196 124 21 chr12 11050192 11050289 -133232200 + L1MC4a LINE L1 6074 6180 -1628 1466 189 0 50 chr12 11052114 11052415 -133230074 + AluJb SINE Alu 12 297 -15 568 119 0 0 chr12 11053169 11053253 -133229236 - AluY SINE Alu -226 84 1 237 311 154 74 chr12 11053253 11053571 -133228918 - L2 LINE L2 -6 3266 2920 1729 175 3 16 chr12 11053571 11053885 -133228604 + AluJb SINE Alu 1 310 -2 2284 92 0 3 chr12 11053913 11054207 -133228282 + AluSg SINE Alu 1 293 -17 366 218 36 91 chr12 11054213 11054323 -133228166 - MIR SINE MIR -151 111 8 253 308 47 37 chr12 11054695 11054802 -133227687 - MIR3 SINE MIR -19 189 82 271 282 137 26 chr12 11054813 11054930 -133227559 - L2 LINE L2 -22 3250 3121 2130 114 0 10 chr12 11056448 11056746 -133225743 + AluSx SINE Alu 1 295 -17 2084 129 10 3 chr12 11057542 11057837 -133224652 + AluSq SINE Alu 1 297 -16 234 278 22 78 chr12 11058521 11058611 -133223878 - MIR3 SINE MIR -39 169 85 3792 125 15 11 chr12 11059338 11059953 -133222536 - LTR5 LTR ERVK -352 617 1 188 35 35 0 chr12 11060382 11060411 -133222078 + (TAAAAA)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr12 11060681 11060707 -133221782 + (T)n Simple_repeat Simple_repeat 1 26 0 419 360 84 45 chr12 11060832 11061140 -133221349 + L2 LINE L2 2953 3272 0 2033 117 3 7 chr12 11061599 11061882 -133220607 - AluSg SINE Alu -18 292 11 29 0 0 0 chr12 11062826 11062855 -133219634 + AT_rich Low_complexity Low_complexity 1 29 0 260 337 54 0 chr12 11063318 11063410 -133219079 + L2 LINE L2 3212 3308 -5 293 132 0 20 chr12 11064643 11064703 -133217786 + L1MC2 LINE L1 5180 5237 -909 4846 165 43 8 chr12 11064810 11065745 -133216744 + L1MC2 LINE L1 5364 6331 -13 2521 188 118 37 chr12 11065762 11066415 -133216074 + L1MD1 LINE L1 5441 6146 -96 665 240 228 4 chr12 11066415 11066597 -133215892 + MSTD LTR MaLR 1 141 -255 321 47 0 0 chr12 11066597 11066640 -133215849 + (TC)n Simple_repeat Simple_repeat 1 43 0 665 240 228 4 chr12 11066640 11066703 -133215786 + MSTD LTR MaLR 141 301 -95 * 666 208 39 97 chr12 11066693 11066972 -133215517 - MLT1C LTR MaLR -196 271 9 314 177 161 0 chr12 11066980 11067042 -133215447 + MER5A DNA MER1_type 93 164 -25 932 43 0 51 chr12 11067050 11067188 -133215301 + L1MA6 LINE L1 6170 6300 0 292 172 172 0 chr12 11067349 11067407 -133215082 + MER5A DNA MER1_type 99 166 -23 983 63 0 42 chr12 11067409 11067552 -133214937 + L1PA10 LINE L1 6023 6159 -9 1108 189 32 73 chr12 11067552 11067904 -133214585 + L1M1 LINE L1 3523 3860 -3705 1305 193 73 0 chr12 11067914 11068189 -133214300 - MER2 DNA MER2_type 0 345 51 232 250 0 0 chr12 11068197 11068249 -133214240 + LTR30 LTR ERV1 1 52 -670 3439 103 138 107 chr12 11068249 11069331 -133213158 + LTR12 LTR ERV1 57 714 0 2320 211 106 11 chr12 11069376 11070007 -133212482 + L1M1 LINE L1 3866 4556 -3009 * 3011 70 3 0 chr12 11070004 11070389 -133212100 + L1PA8 LINE L1 5766 6151 -21 494 209 99 0 chr12 11070399 11070581 -133211908 + L1M1 LINE L1 4536 4735 -2830 2209 170 3 0 chr12 11070755 11071119 -133211370 + MLT1A1 LTR MaLR 1 365 0 328 323 15 8 chr12 11071172 11071305 -133211184 - L2 LINE L2 0 3313 3180 1160 251 28 8 chr12 11071306 11071705 -133210784 + L1ME1 LINE L1 2464 2870 -3276 242 50 0 0 chr12 11071706 11071746 -133210743 - Alu SINE Alu 0 301 262 966 112 7 7 chr12 11071747 11071890 -133210599 - AluSq/x SINE Alu -170 143 1 310 235 12 0 chr12 11071928 11072009 -133210480 + L1ME1 LINE L1 2956 3037 -3109 5351 238 66 40 chr12 11072060 11072198 -133210291 + L1ME1 LINE L1 3211 3344 -2830 1808 196 48 24 chr12 11072198 11072652 -133209837 + MLT1C LTR MaLR 1 465 -2 5351 238 66 40 chr12 11072652 11073004 -133209485 + L1ME1 LINE L1 3344 3685 -2489 2428 67 3 7 chr12 11073004 11073304 -133209185 + AluSp SINE Alu 1 299 -14 5351 238 66 40 chr12 11073304 11074016 -133208473 + L1ME1 LINE L1 3685 4377 -1797 2127 120 0 17 chr12 11074016 11074317 -133208172 + AluSx SINE Alu 1 296 -16 5351 238 66 40 chr12 11074317 11075012 -133207477 + L1ME1 LINE L1 4377 5174 -1000 639 95 0 0 chr12 11075012 11075107 -133207382 - L1PB1 LINE L1 -8 6143 6049 5351 238 66 40 chr12 11075107 11075533 -133206956 + L1ME1 LINE L1 5174 5588 -586 674 191 0 0 chr12 11075555 11075691 -133206798 + FLAM_C SINE Alu 1 136 0 1840 206 83 46 chr12 11075693 11076238 -133206251 + L1ME1 LINE L1 5597 6161 -5 1402 213 137 12 chr12 11076248 11076665 -133205824 + L1MC4 LINE L1 7561 8029 -13 1794 146 7 34 chr12 11077592 11077887 -133204602 + AluJb SINE Alu 1 287 -25 285 29 0 0 chr12 11079516 11079550 -133202939 + (TG)n Simple_repeat Simple_repeat 2 35 0 261 292 10 0 chr12 11080423 11080519 -133201970 + L1ME LINE L1 5802 5898 -223 22 80 0 0 chr12 11080932 11080982 -133201507 + AT_rich Low_complexity Low_complexity 1 50 0 232 219 172 0 chr12 11081207 11081271 -133201218 - MIR SINE MIR -109 153 79 3372 131 73 13 chr12 11081868 11082488 -133200001 + L1MA10 LINE L1 5676 6332 -2 272 297 70 16 chr12 11086481 11086609 -133195880 + MER5A DNA MER1_type 49 183 -6 27 29 0 0 chr12 11087928 11087962 -133194527 + AT_rich Low_complexity Low_complexity 1 34 0 327 317 28 14 chr12 11088117 11088262 -133194227 - L1ME LINE L1 -462 5659 5513 303 234 31 0 chr12 11089003 11089067 -133193422 - MIR SINE MIR -108 154 89 536 298 57 40 chr12 11089178 11089406 -133193083 + MIR SINE MIR 21 252 -10 198 306 181 0 chr12 11089893 11089965 -133192524 + L2 LINE L2 3171 3255 -58 2008 62 19 11 chr12 11090792 11091052 -133191437 + AluY SINE Alu 43 304 -7 22 0 0 0 chr12 11091499 11091521 -133190968 + AT_rich Low_complexity Low_complexity 1 22 0 197 245 41 0 chr12 11091791 11091840 -133190649 - L2 LINE L2 -8 3264 3214 243 163 61 0 chr12 11092592 11092603 -133189886 + MER3 DNA MER1_type 37 50 -159 311 129 129 0 chr12 11092603 11092665 -133189824 - MER3 DNA MER1_type 0 209 140 472 214 45 9 chr12 11092877 11092989 -133189500 - MER3 DNA MER1_type -89 120 5 725 250 91 19 chr12 11094511 11094775 -133187714 - L1ME LINE L1 -343 5778 5496 377 160 217 57 chr12 11094881 11094987 -133187502 - L2 LINE L2 -12 3301 3179 256 347 119 27 chr12 11096068 11096287 -133186202 - MIR SINE MIR -2 260 22 754 114 0 0 chr12 11097993 11098098 -133184391 + AluSg/x SINE Alu 180 284 -26 216 0 0 0 chr12 11098293 11098317 -133184172 + (A)n Simple_repeat Simple_repeat 1 24 0 308 370 74 0 chr12 11098692 11098854 -133183635 - MIR SINE MIR -7 255 82 2313 94 0 3 chr12 11099182 11099491 -133182998 + AluSx SINE Alu 3 310 -2 1286 193 36 0 chr12 11099783 11099906 -133182583 + AluJb SINE Alu 1 118 -184 531 0 0 0 chr12 11099906 11099965 -133182524 + (CATAA)n Simple_repeat Simple_repeat 2 60 0 1286 193 36 0 chr12 11099965 11100115 -133182374 + AluJb SINE Alu 118 284 -18 644 208 0 0 chr12 11099995 11100115 -133182374 + AluSg/x SINE Alu 162 302 0 190 0 0 0 chr12 11100115 11100136 -133182353 + (TAA)n Simple_repeat Simple_repeat 2 180 0 211 322 149 0 chr12 11100524 11100645 -133181844 + L2 LINE L2 2920 3058 -214 324 259 105 37 chr12 11102164 11102326 -133180163 + MIR SINE MIR 34 206 -56 1775 79 0 9 chr12 11102489 11102718 -133179771 + AluSq SINE Alu 85 311 -2 2032 108 58 0 chr12 11102737 11103015 -133179474 + AluSq SINE Alu 1 294 -19 313 358 103 0 chr12 11103097 11103262 -133179227 - L2 LINE L2 -222 3050 2869 507 219 57 0 chr12 11103423 11103528 -133178961 + MER81 DNA DNA 1 111 -3 541 202 40 0 chr12 11104014 11104138 -133178351 + MER3 DNA MER1_type 81 209 0 261 207 35 0 chr12 11104095 11104153 -133178336 - MER3 DNA MER1_type -119 90 31 * 279 307 171 11 chr12 11105713 11105889 -133176600 + L2 LINE L2 2848 3051 -221 371 198 153 9 chr12 11106666 11106777 -133175712 - MIR SINE MIR -11 251 125 29 0 0 0 chr12 11106897 11106926 -133175563 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr12 11107064 11107086 -133175403 + (CA)n Simple_repeat Simple_repeat 1 22 0 258 160 0 0 chr12 11109353 11109403 -133173086 + (TG)n Simple_repeat Simple_repeat 2 51 0 1926 159 3 13 chr12 11111854 11112169 -133170320 + AluJb SINE Alu 1 312 0 306 67 0 0 chr12 11112909 11112954 -133169535 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 2322 62 0 0 chr12 11112958 11113232 -133169257 - AluY SINE Alu -37 274 1 255 352 106 0 chr12 11113474 11113616 -133168873 + MER5B DNA MER1_type 7 163 -15 2361 53 0 3 chr12 11114440 11114750 -133167739 + AluY SINE Alu 1 309 0 299 308 131 58 chr12 11115794 11116190 -133166299 - L2 LINE L2 -17 3296 2872 444 278 138 8 chr12 11116683 11116874 -133165615 - MIR SINE MIR -1 261 38 877 223 5 5 chr12 11116874 11117071 -133165418 - MER3 DNA MER1_type -1 208 12 540 0 0 0 chr12 11117748 11117808 -133164681 + (GA)n Simple_repeat Simple_repeat 1 60 0 2203 123 3 3 chr12 11117819 11118127 -133164362 + AluSx SINE Alu 1 308 -4 1098 173 36 0 chr12 11118285 11118505 -133163984 + L1 LINE L1 3812 4039 -2107 1505 260 240 66 chr12 11119613 11119786 -133162703 - L2 LINE L2 0 3313 3171 583 176 0 101 chr12 11119786 11119934 -133162555 + FLAM_A SINE Alu 1 133 0 1505 260 240 66 chr12 11119934 11121081 -133161408 - L2 LINE L2 -142 3171 1759 233 270 191 0 chr12 11121162 11121277 -133161212 - L3b LINE CR1 -205 1378 1242 675 236 6 32 chr12 11122844 11123001 -133159488 - FRAM SINE Alu -24 152 1 2481 62 0 13 chr12 11125052 11125356 -133157133 - AluY SINE Alu -11 300 1 206 95 24 0 chr12 11126847 11126889 -133155600 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 247 317 24 0 chr12 11127005 11127087 -133155402 - L2 LINE L2 -8 3264 3181 2154 106 3 7 chr12 11127133 11127425 -133155064 - AluSx SINE Alu -17 295 5 388 314 95 14 chr12 11129996 11130206 -133152283 + MIR SINE MIR 29 255 -7 25 31 0 0 chr12 11131275 11131307 -133151182 + AT_rich Low_complexity Low_complexity 1 32 0 390 351 96 16 chr12 11131359 11131692 -133150797 - L2 LINE L2 -214 3058 2695 1633 225 67 43 chr12 11131702 11132240 -133150249 + L1MD2 LINE L1 5795 6345 -14 663 277 100 73 chr12 11132459 11133090 -133149399 - L2 LINE L2 -939 2375 1728 371 248 5 151 chr12 11133375 11133458 -133149031 - MER5B DNA MER1_type -1 177 84 2249 118 48 25 chr12 11133458 11133814 -133148675 + THE1B LTR MaLR 1 364 0 11581 102 6 0 chr12 11133814 11135384 -133147105 + THE1B-int LTR MaLR 1 1580 0 2190 107 62 37 chr12 11135384 11135739 -133146750 + THE1B LTR MaLR 1 364 0 371 248 5 151 chr12 11135739 11135859 -133146630 - MER5B DNA MER1_type -91 87 2 234 0 0 0 chr12 11136326 11136352 -133146137 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 513 179 0 0 chr12 11136357 11136441 -133146048 - AluJ SINE Alu -24 288 205 804 201 0 7 chr12 11136442 11136581 -133145908 - AluJ SINE Alu -173 139 2 21 36 0 0 chr12 11136823 11136851 -133145638 + AT_rich Low_complexity Low_complexity 1 28 0 449 194 16 91 chr12 11136851 11137037 -133145452 + L1MC5 LINE L1 7760 7931 -30 2367 57 6 31 chr12 11137546 11137864 -133144625 + AluY SINE Alu 1 310 -1 220 337 0 12 chr12 11138032 11138118 -133144371 + MIR SINE MIR 103 187 -75 2388 76 0 13 chr12 11138434 11138738 -133143751 + AluSx SINE Alu 1 300 -12 629 247 37 43 chr12 11139069 11139287 -133143202 + MIR SINE MIR 49 262 0 690 226 0 41 chr12 11139712 11139858 -133142631 + MER5B DNA MER1_type 35 174 -4 200 279 0 16 chr12 11139962 11140023 -133142466 + CT-rich Low_complexity Low_complexity 1 60 0 301 280 11 19 chr12 11140028 11140163 -133142326 + MIR SINE MIR 82 212 -50 275 280 53 0 chr12 11140709 11140784 -133141705 + MIR SINE MIR 36 114 -94 2044 78 85 14 chr12 11140784 11141067 -133141422 - AluY SINE Alu -8 303 1 3888 136 21 2 chr12 11141552 11142175 -133140314 + MER41B LTR ERV1 1 635 0 3147 124 18 12 chr12 11142175 11142746 -133139743 + MER41B-int LTR ERV1 1 633 -5313 * 29469 102 38 19 chr12 11142738 11143690 -133138799 + MER41B-int LTR ERV1 1083 2016 -3930 2141 133 22 35 chr12 11143690 11144059 -133138430 + THE1B LTR MaLR 1 364 0 2474 87 3 0 chr12 11144060 11144370 -133138119 + AluY SINE Alu 1 311 0 29469 102 38 19 chr12 11144370 11148190 -133134299 + MER41B-int LTR ERV1 2015 5946 0 3718 141 41 3 chr12 11148190 11148802 -133133687 + MER41B LTR ERV1 1 635 0 678 237 217 10 chr12 11149291 11149489 -133133000 - MIR SINE MIR -1 261 23 4298 195 40 11 chr12 11149572 11150789 -133131700 - L1MB7 LINE L1 -19 6165 4901 880 186 7 0 chr12 11150848 11150993 -133131496 - FRAM SINE Alu -30 146 1 1221 176 14 92 chr12 11150993 11151049 -133131440 - L1MB7 LINE L1 -1373 4773 4714 2349 54 44 0 chr12 11151049 11151344 -133131145 + AluY SINE Alu 4 311 0 1221 176 14 92 chr12 11151344 11151644 -133130845 - L1MB7 LINE L1 -1432 4714 4445 2066 141 24 29 chr12 11154272 11154649 -133127840 + THE1C LTR MaLR 1 375 0 1628 173 0 49 chr12 11155059 11155365 -133127124 + AluJb SINE Alu 12 302 -10 180 0 0 0 chr12 11156056 11156076 -133126413 + (CTG)n Simple_repeat Simple_repeat 1 20 0 2139 105 0 63 chr12 11156076 11156410 -133126079 - AluSq SINE Alu 0 313 1 405 237 149 18 chr12 11156747 11156861 -133125628 + L2 LINE L2 3185 3313 0 3796 152 39 95 chr12 11157175 11158589 -133123900 + L1MA9 LINE L1 4969 6299 -13 1590 204 72 58 chr12 11158645 11158711 -133123778 + MLT1D LTR MaLR 5 69 -436 2410 53 17 3 chr12 11158711 11159010 -133123479 - AluY SINE Alu -8 303 1 1590 204 72 58 chr12 11159010 11159429 -133123060 + MLT1D LTR MaLR 69 497 -8 1229 215 52 12 chr12 11159619 11159942 -133122547 + MLT1B LTR MaLR 7 342 -48 750 176 139 0 chr12 11159942 11160107 -133122382 + MER1B DNA MER1_type 1 148 -149 724 151 8 8 chr12 11160123 11160249 -133122240 - AluSq/x SINE Alu -182 130 5 1154 110 0 37 chr12 11160253 11160444 -133122045 + MER1B DNA MER1_type 136 319 -20 335 135 0 0 chr12 11160453 11160505 -133121984 + MLT1B LTR MaLR 416 467 0 1452 77 0 25 chr12 11160896 11161092 -133121397 + AluSg/x SINE Alu 90 280 -30 276 267 53 0 chr12 11161190 11161265 -133121224 - MIR SINE MIR -67 195 117 2282 101 13 0 chr12 11162188 11162496 -133119993 + AluSx SINE Alu 1 312 0 21 0 0 0 chr12 11162586 11162607 -133119882 + GC_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr12 11162607 11162637 -133119852 + (CA)n Simple_repeat Simple_repeat 1 30 0 395 149 23 11 chr12 11162989 11163076 -133119413 + L1MB3 LINE L1 6087 6174 -9 1127 206 56 103 chr12 11164806 11165271 -133117218 - MLT1D LTR MaLR 0 505 63 1970 120 39 34 chr12 11165273 11165821 -133116668 - MER51A LTR ERV1 0 634 1 429 108 15 0 chr12 11165821 11165884 -133116605 - MLT1D LTR MaLR -441 64 1 297 0 0 0 chr12 11165973 11166006 -133116483 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 464 263 44 0 chr12 11166252 11166366 -133116123 + MIR3 SINE MIR 83 201 -7 285 311 98 16 chr12 11166433 11166555 -133115934 - L3 LINE CR1 -85 1492 1361 229 308 98 14 chr12 11166548 11166691 -133115798 + MIR SINE MIR 102 256 -6 * 273 327 75 69 chr12 11166762 11167080 -133115409 - L3 LINE CR1 -749 828 509 307 329 121 54 chr12 11167590 11167870 -133114619 + L2 LINE L2 2932 3230 -42 917 288 113 39 chr12 11168408 11168842 -133113647 + L2 LINE L2 2848 3313 0 191 36 36 0 chr12 11169133 11169161 -133113328 + (TA)n Simple_repeat Simple_repeat 1 29 0 343 118 16 91 chr12 11169183 11169369 -133113120 + (TA)n Simple_repeat Simple_repeat 1 172 0 * 347 159 62 45 chr12 11169250 11169426 -133113063 + (TATAG)n Simple_repeat Simple_repeat 2 180 0 412 278 208 32 chr12 11169789 11170160 -133112329 + MLT1J2 LTR MaLR 1 436 -14 390 253 0 10 chr12 11170373 11170472 -133112017 + Charlie7 DNA MER1_type 124 221 -2391 486 264 179 8 chr12 11170571 11170924 -133111565 + Charlie7 DNA MER1_type 1436 1848 -764 1275 72 0 0 chr12 11170924 11171133 -133111356 - AluSc SINE Alu 0 336 128 434 232 118 16 chr12 11171194 11171440 -133111049 + Charlie7 DNA MER1_type 1853 2123 -489 201 175 0 0 chr12 11171445 11171485 -133111004 + (TA)n Simple_repeat Simple_repeat 1 40 0 225 224 0 0 chr12 11171542 11171600 -133110889 - L1MC4 LINE L1 -1345 6697 6640 317 297 11 0 chr12 11171659 11171750 -133110739 - L1MC4 LINE L1 -1339 6703 6612 428 229 28 14 chr12 11171790 11171934 -133110555 + Charlie7 DNA MER1_type 2204 2349 -263 23 0 0 0 chr12 11172083 11172106 -133110383 + AT_rich Low_complexity Low_complexity 1 23 0 1753 173 104 33 chr12 11172171 11172594 -133109895 - MLT2B1 LTR ERVL -67 453 1 3601 153 36 12 chr12 11172594 11172823 -133109666 - ERVL-B1 LTR ERVL -7 5757 5535 2009 171 6 0 chr12 11172823 11173162 -133109327 - MER2 DNA MER2_type -3 341 1 3601 153 36 12 chr12 11173162 11173623 -133108866 - ERVL-B1 LTR ERVL -229 5535 5050 * 7344 149 66 2 chr12 11173621 11174924 -133107565 - ERVL-B1 LTR ERVL -1699 4065 2680 1245 150 98 33 chr12 11174929 11175202 -133107287 + THE1C LTR MaLR 1 291 -84 2474 106 45 46 chr12 11175202 11175657 -133106832 + THE1C LTR MaLR 1 428 0 966 163 17 6 chr12 11175659 11175837 -133106652 + THE1C-int LTR MaLR 3 182 -1398 413 135 40 0 chr12 11175837 11175911 -133106578 + THE1C LTR MaLR 352 428 0 13345 191 31 7 chr12 11175913 11178526 -133103963 - ERVL-B1 LTR ERVL -3087 2677 2 364 91 0 0 chr12 11178529 11178584 -133103905 - ERVL-B1 LTR ERVL -2 518 464 283 149 0 53 chr12 11178584 11178678 -133103811 + (TA)n Simple_repeat Simple_repeat 1 89 0 1711 168 129 30 chr12 11178683 11179118 -133103371 - MLT2B1 LTR ERVL -40 480 3 184 301 58 39 chr12 11179835 11179938 -133102551 + L2 LINE L2 2202 2306 -1008 6825 217 93 33 chr12 11180382 11181816 -133100673 + L1ME LINE L1 2661 4009 -2233 2428 71 0 3 chr12 11181816 11182127 -133100362 + AluY SINE Alu 1 310 -1 6825 217 93 33 chr12 11182127 11183067 -133099422 + L1ME LINE L1 4009 4892 -1350 2017 136 10 3 chr12 11183067 11183369 -133099120 + AluSc SINE Alu 1 304 -5 6825 217 93 33 chr12 11183369 11183721 -133098768 + L1ME LINE L1 4892 5222 -1020 1794 156 38 41 chr12 11183721 11184112 -133098377 - MLT1B LTR MaLR 0 390 1 6825 217 93 33 chr12 11184112 11184147 -133098342 + L1ME LINE L1 5222 5596 -646 360 0 0 0 chr12 11184152 11184192 -133098297 + (CA)n Simple_repeat Simple_repeat 2 41 0 229 275 62 0 chr12 11185365 11185445 -133097044 + L1ME LINE L1 5740 5824 -297 348 77 0 0 chr12 11185737 11185789 -133096700 + (CA)n Simple_repeat Simple_repeat 1 52 0 464 250 194 52 chr12 11186005 11186293 -133096196 + L2 LINE L2 2947 3275 -38 23 0 0 0 chr12 11186923 11186946 -133095543 + AT_rich Low_complexity Low_complexity 1 23 0 381 279 111 41 chr12 11188291 11188535 -133093954 - MIR SINE MIR 0 262 2 204 93 37 19 chr12 11189245 11189299 -133093190 + A-rich Low_complexity Low_complexity 1 55 0 26 0 0 0 chr12 11189915 11189941 -133092548 + AT_rich Low_complexity Low_complexity 1 26 0 2142 111 17 7 chr12 11189954 11190251 -133092238 + AluSx SINE Alu 1 300 -12 23 0 0 0 chr12 11190566 11190589 -133091900 + AT_rich Low_complexity Low_complexity 1 23 0 232 235 0 0 chr12 11190654 11190705 -133091784 - MER116 DNA Mariner -3 77 27 302 125 0 0 chr12 11191265 11191313 -133091176 - Alu SINE Alu -12 290 243 195 364 57 0 chr12 11191313 11191401 -133091088 - MIR SINE MIR -168 94 2 470 278 100 48 chr12 11192319 11192549 -133089940 + L2 LINE L2 1323 1564 -1750 1380 254 106 11 chr12 11192691 11192807 -133089682 - L1MC4 LINE L1 -295 7747 7643 2277 85 0 10 chr12 11192807 11193101 -133089388 - AluSc SINE Alu -11 298 8 1380 254 106 11 chr12 11193101 11193448 -133089041 - L1MC4 LINE L1 -399 7643 7240 1653 201 98 8 chr12 11193454 11193832 -133088657 - L1MC4 LINE L1 -956 7086 6675 871 253 125 142 chr12 11193990 11194451 -133088038 + L2 LINE L2 1701 2169 -1145 2366 81 0 0 chr12 11194451 11194765 -133087724 + AluY SINE Alu 1 314 0 871 253 125 142 chr12 11194765 11195561 -133086928 + L2 LINE L2 2169 2937 -377 381 261 193 43 chr12 11197126 11197333 -133085156 - MIR SINE MIR -6 256 19 201 121 0 0 chr12 11197544 11197577 -133084912 + (GGA)n Simple_repeat Simple_repeat 1 33 0 1307 187 53 28 chr12 11198297 11198731 -133083758 + Charlie1b DNA MER1_type 35 523 0 819 89 0 0 chr12 11200639 11200751 -133081738 + L1PB1 LINE L1 6033 6144 -7 2058 111 34 7 chr12 11202467 11202765 -133079724 - AluSx SINE Alu -6 306 1 27 0 0 0 chr12 11202841 11202868 -133079621 + AT_rich Low_complexity Low_complexity 1 27 0 2190 112 10 3 chr12 11202978 11203273 -133079216 + AluSq SINE Alu 1 297 -16 246 289 39 67 chr12 11203945 11204049 -133078440 - MIR3 SINE MIR -23 185 85 474 304 51 0 chr12 11206400 11206558 -133075931 + MIR3 SINE MIR 30 195 -13 302 256 109 119 chr12 11210591 11210785 -133071704 - L1M2 LINE L1 -5774 1075 881 207 0 0 0 chr12 11210785 11210808 -133071681 + (TGG)n Simple_repeat Simple_repeat 2 24 0 302 256 109 119 chr12 11210808 11211008 -133071481 - L1M2 LINE L1 -5968 881 685 231 366 20 10 chr12 11211937 11212038 -133070451 + MIR SINE MIR 28 129 -133 267 333 0 0 chr12 11212247 11212322 -133070167 + L2 LINE L2 3193 3267 -5 194 304 22 54 chr12 11213108 11213200 -133069289 - L2 LINE L2 0 3272 3184 679 199 24 54 chr12 11213553 11213719 -133068770 - MER69A DNA AcHobo 0 177 17 262 286 0 61 chr12 11213835 11213933 -133068556 - MLT2E LTR ERVL -496 132 41 891 188 87 42 chr12 11214420 11214708 -133067781 - MER33 DNA MER1_type -22 302 2 443 304 70 19 chr12 11215405 11215563 -133066926 - MIR3 SINE MIR -20 188 23 1654 117 0 107 chr12 11215634 11215932 -133066557 + AluJb SINE Alu 32 297 -15 351 0 0 0 chr12 11216680 11216719 -133065770 + (TA)n Simple_repeat Simple_repeat 1 39 0 1613 189 34 20 chr12 11217040 11217390 -133065099 - MLT1A1 LTR MaLR -8 357 3 26 82 0 0 chr12 11217479 11217540 -133064949 + AT_rich Low_complexity Low_complexity 1 61 0 32 0 0 0 chr12 11217923 11217955 -133064534 + AT_rich Low_complexity Low_complexity 1 32 0 943 147 223 83 chr12 11218973 11219238 -133063251 - AluJb SINE Alu 0 302 1 536 294 52 26 chr12 11219385 11219579 -133062910 - MIR SINE MIR -62 200 2 537 268 74 5 chr12 11220654 11220844 -133061645 + LTR33 LTR ERVL 12 214 -307 383 230 110 55 chr12 11220902 11221102 -133061387 + LTR33 LTR ERVL 311 521 0 425 155 14 0 chr12 11221275 11221346 -133061143 - MER81 DNA DNA -42 72 1 358 175 16 0 chr12 11222535 11222598 -133059891 - MER81 DNA DNA -42 72 9 638 285 79 19 chr12 11222608 11222725 -133059764 + MIR SINE MIR 32 140 -122 1575 184 7 31 chr12 11222725 11223019 -133059470 + AluJo SINE Alu 2 288 -24 638 285 79 19 chr12 11223019 11223115 -133059374 + MIR SINE MIR 140 258 -4 21 0 0 0 chr12 11224090 11224111 -133058378 + AT_rich Low_complexity Low_complexity 1 21 0 2434 74 3 0 chr12 11224619 11224916 -133057573 + AluSg SINE Alu 1 298 -12 2194 253 51 45 chr12 11225004 11226044 -133056445 + L1MC4 LINE L1 6997 8042 0 21 57 0 0 chr12 11226158 11226193 -133056296 + AT_rich Low_complexity Low_complexity 1 35 0 1750 214 0 0 chr12 11226699 11227008 -133055481 - AluJb SINE Alu -3 309 1 1046 183 24 56 chr12 11227145 11227396 -133055093 + MLT1A2 LTR MaLR 1 243 -131 704 230 24 12 chr12 11227493 11227658 -133054831 + MLT1A2 LTR MaLR 208 374 0 1504 186 15 22 chr12 11228063 11228337 -133054152 - AluJo SINE Alu -12 300 29 390 333 0 0 chr12 11228597 11228741 -133053748 + MER117 DNA MER1_type 9 152 -45 208 353 86 11 chr12 11230042 11230229 -133052260 - MIR SINE MIR -31 231 31 728 244 10 70 chr12 11230579 11230780 -133051709 + MER5A DNA MER1_type 1 189 0 21 0 0 0 chr12 11230970 11230991 -133051498 + AT_rich Low_complexity Low_complexity 1 21 0 24538 78 211 5 chr12 11231008 11236078 -133046411 - L1PA6 LINE L1 -5 6149 15 833 209 7 0 chr12 11236078 11236226 -133046263 - AluJb SINE Alu -27 285 137 1371 194 0 27 chr12 11236306 11236569 -133045920 - AluJo SINE Alu -36 276 21 21 36 0 0 chr12 11236586 11236614 -133045875 + AT_rich Low_complexity Low_complexity 1 28 0 426 308 50 18 chr12 11237605 11237786 -133044703 + MIR SINE MIR 1 185 -59 255 305 143 9 chr12 11238217 11238322 -133044167 - MIR SINE MIR -59 149 31 322 320 45 34 chr12 11239533 11239711 -133042778 - L1MEd LINE L1 -5899 220 41 270 275 62 28 chr12 11239751 11239929 -133042560 - L1M4 LINE L1 -1497 4649 4466 238 362 64 0 chr12 11240560 11240654 -133041835 - L2 LINE L2 -39 3233 3134 204 167 0 0 chr12 11240975 11241023 -133041466 + (TG)n Simple_repeat Simple_repeat 1 48 0 436 319 29 7 chr12 11241746 11241884 -133040605 + MIR SINE MIR 2 142 -120 785 168 22 0 chr12 11241970 11242107 -133040382 + AluSq SINE Alu 15 154 -159 460 151 47 0 chr12 11242101 11242187 -133040302 - AluJ/FLAM SINE Alu -222 90 1 * 1771 158 82 15 chr12 11242202 11242543 -133039946 - THE1B LTR MaLR 0 364 1 11340 104 6 6 chr12 11242547 11244123 -133038366 - THE1B-int LTR MaLR -4 1576 1 2104 124 67 14 chr12 11244123 11244469 -133038020 - THE1B LTR MaLR 0 364 1 352 302 113 13 chr12 11244477 11244636 -133037853 - MIR SINE MIR -42 220 46 879 118 28 42 chr12 11244658 11244802 -133037687 + AluSg/x SINE Alu 160 301 -11 264 299 69 11 chr12 11245080 11245167 -133037322 - L2 LINE L2 -64 3208 3117 277 303 0 64 chr12 11245743 11245852 -133036637 - L2 LINE L2 -16 3297 3196 2327 181 94 5 chr12 11248207 11248778 -133033711 - L1M4 LINE L1 -1120 5262 4662 2619 252 15 21 chr12 11248799 11249899 -133032590 - L1M4c LINE L1 -3248 3858 2764 21 0 0 0 chr12 11250138 11250159 -133032330 + AT_rich Low_complexity Low_complexity 1 21 0 1124 187 41 4 chr12 11250161 11250407 -133032082 - L1MC2 LINE L1 -11 6333 6079 22 0 0 0 chr12 11250537 11250559 -133031930 + AT_rich Low_complexity Low_complexity 1 22 0 1793 251 130 17 chr12 11250608 11251482 -133031007 - L1M4c LINE L1 -4519 2518 1761 1649 162 49 35 chr12 11251482 11251766 -133030723 - AluJo SINE Alu -24 288 1 1793 251 130 17 chr12 11251766 11252439 -133030050 - L1M4c LINE L1 -5276 1761 1165 366 284 17 0 chr12 11252526 11252642 -133029847 - L1ME3 LINE L1 -2 6160 6043 556 197 44 9 chr12 11252924 11253141 -133029348 - L1ME LINE L1 -720 5444 5219 185 333 27 54 chr12 11254616 11254727 -133027762 + MIR3 SINE MIR 91 198 -10 559 296 82 26 chr12 11255906 11256139 -133026350 - MIR SINE MIR -1 261 16 23 54 0 0 chr12 11258703 11258740 -133023749 + AT_rich Low_complexity Low_complexity 1 37 0 725 266 220 8 chr12 11260160 11260524 -133021965 - LTR16A1 LTR ERVL 0 457 17 2604 202 26 10 chr12 11260674 11261257 -133021232 + L1MD3 LINE L1 7399 7990 -5 330 231 74 41 chr12 11261823 11261944 -133020545 - MLT1J LTR MaLR -10 501 377 290 119 0 0 chr12 11262102 11262144 -133020345 - MLT1L LTR MaLR -536 79 38 1404 186 4 8 chr12 11262754 11263012 -133019477 - AluJo SINE Alu -13 299 43 249 279 204 35 chr12 11263433 11263605 -133018884 + L2 LINE L2 3113 3313 0 258 193 34 42 chr12 11263840 11263959 -133018530 + (TA)n Simple_repeat Simple_repeat 2 119 0 240 273 156 0 chr12 11264713 11264790 -133017699 - L2 LINE L2 0 3272 3184 6975 30 22 1 chr12 11265400 11266248 -133016241 + L1PA4 LINE L1 5286 6151 -4 469 326 64 11 chr12 11266478 11266665 -133015824 - MER110 LTR ERV1 -93 398 202 1558 144 3 87 chr12 11266683 11266995 -133015494 - AluJo SINE Alu -26 286 1 180 0 0 0 chr12 11268348 11268368 -133014121 + (TAAAAA)n Simple_repeat Simple_repeat 3 22 0 4094 72 18 23 chr12 11268684 11269055 -133013434 - L1PA6 LINE L1 -4 6150 5782 2649 23 0 0 chr12 11269055 11269363 -133013126 - AluYa5 SINE Alu -3 308 1 4094 72 18 23 chr12 11269363 11269560 -133012929 - L1PA6 LINE L1 -372 5782 5585 24 32 0 0 chr12 11269686 11269717 -133012772 + AT_rich Low_complexity Low_complexity 1 31 0 616 191 64 127 chr12 11269882 11270102 -133012387 + MER96B DNA MER1_type? 211 416 -1 5300 156 48 12 chr12 11270223 11270698 -133011791 - L1MA9 LINE L1 0 6312 5855 384 22 0 0 chr12 11270698 11270743 -133011746 + (TG)n Simple_repeat Simple_repeat 2 46 0 5300 156 48 12 chr12 11270743 11271475 -133011014 - L1MA9 LINE L1 -457 5855 5036 2230 125 0 0 chr12 11271475 11271780 -133010709 - AluSg SINE Alu -5 305 1 5300 156 48 12 chr12 11271780 11272087 -133010402 - L1MA9 LINE L1 -1276 5036 4741 338 244 44 59 chr12 11272100 11272235 -133010254 + MIR SINE MIR 112 244 -18 237 123 386 0 chr12 11272796 11272853 -133009636 - MADE1 DNA Mariner 0 80 2 676 311 55 26 chr12 11273009 11273389 -133009100 - L1MC4a LINE L1 -1928 5880 5490 1284 273 80 42 chr12 11273452 11274050 -133008439 - L1ME3A LINE L1 -11 6159 5539 1295 260 133 26 chr12 11274303 11275023 -133007466 + L1 LINE L1 2137 2979 -3167 1341 144 21 49 chr12 11275023 11275266 -133007223 - MER46A DNA MER2_type 0 236 1 1295 260 133 26 chr12 11275266 11275472 -133007017 + L1 LINE L1 2979 3162 -2984 1693 140 3 46 chr12 11275550 11275835 -133006654 + AluJo SINE Alu 3 275 -37 333 47 0 0 chr12 11275838 11275881 -133006608 + (TC)n Simple_repeat Simple_repeat 2 44 0 324 81 32 16 chr12 11275881 11275943 -133006546 + (TA)n Simple_repeat Simple_repeat 2 64 0 294 248 133 0 chr12 11276025 11276130 -133006359 + L1 LINE L1 3689 3807 -2339 * 1041 246 47 28 chr12 11276116 11276651 -133005838 + L1MEc LINE L1 2083 2590 -3625 596 209 99 22 chr12 11276674 11276833 -133005656 + MLT1A1 LTR MaLR 1 139 -226 412 149 0 0 chr12 11276950 11277024 -133005465 + AluS SINE Alu 232 305 -4 2225 68 7 0 chr12 11277257 11277604 -133004885 - AluY SINE Alu 0 349 1 23 33 0 0 chr12 11278111 11278141 -133004348 + AT_rich Low_complexity Low_complexity 1 30 0 1406 22 11 11 chr12 11278888 11279107 -133003382 + L1PA2 LINE L1 5971 6189 0 187 245 57 0 chr12 11279539 11279592 -133002897 + L2 LINE L2 2323 2378 -936 1150 173 0 28 chr12 11279598 11279812 -133002677 + AluJo SINE Alu 28 235 -77 215 226 0 21 chr12 11279941 11280034 -133002455 + (CATATA)n Simple_repeat Simple_repeat 2 92 0 5752 151 27 6 chr12 11280125 11281222 -133001267 - L1MA5 LINE L1 -2 6298 5182 22 70 0 0 chr12 11281320 11281363 -133001126 + AT_rich Low_complexity Low_complexity 1 43 0 580 328 59 11 chr12 11282512 11282799 -132999690 - LTR16B LTR ERVL -51 413 113 2550 154 20 18 chr12 11282843 11283297 -132999192 - MER67C LTR ERV1 0 710 256 1985 280 15 36 chr12 11283538 11284069 -132998420 + MLT1G LTR MaLR 1 542 -48 1141 118 70 0 chr12 11284069 11284256 -132998233 + L1PA11 LINE L1 5972 6171 -3 189 0 0 0 chr12 11284261 11284282 -132998207 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1985 280 15 36 chr12 11284282 11284347 -132998142 + MLT1G LTR MaLR 546 590 0 1987 173 23 45 chr12 11284396 11284881 -132997608 + L1MB8 LINE L1 5695 6168 -10 252 246 0 0 chr12 11285312 11285369 -132997120 - L1M4 LINE L1 -1198 4948 4892 918 10 0 0 chr12 11285447 11285550 -132996939 - L1PA5 LINE L1 -8 6146 6044 201 74 0 0 chr12 11285842 11285869 -132996620 + (T)n Simple_repeat Simple_repeat 1 27 0 578 248 89 9 chr12 11286030 11286244 -132996245 + L1MDa LINE L1 1903 2133 -4407 194 247 56 45 chr12 11286310 11286399 -132996090 - L2 LINE L2 -1103 2211 2122 2243 150 58 27 chr12 11286473 11286513 -132995976 - MSTB LTR MaLR 0 426 389 2267 91 0 3 chr12 11286513 11286820 -132995669 + AluSc SINE Alu 1 306 -3 2243 150 58 27 chr12 11286820 11287068 -132995421 - MSTB LTR MaLR -37 389 119 1219 146 75 0 chr12 11287068 11287281 -132995208 + MER30 DNA MER1_type 1 229 -1 2243 150 58 27 chr12 11287281 11287404 -132995085 - MSTB LTR MaLR -307 119 1 22 99 0 0 chr12 11287513 11287584 -132994905 + AT_rich Low_complexity Low_complexity 1 71 0 4975 245 107 36 chr12 11287664 11288572 -132993917 - L1MDa LINE L1 -3982 2558 1716 1198 209 25 84 chr12 11288572 11288964 -132993525 + MLT1A2 LTR MaLR 4 372 -2 4975 245 107 36 chr12 11288964 11290048 -132992441 - L1MDa LINE L1 -4824 1716 328 1732 230 14 0 chr12 11290033 11290381 -132992108 + L1M2 LINE L1 1233 1585 -5264 * 1019 175 6 0 chr12 11290387 11290553 -132991936 + MSTA LTR MaLR 5 171 -257 475 344 0 5 chr12 11292621 11292833 -132989656 - L1MC4a LINE L1 -1891 5917 5707 2502 200 39 15 chr12 11292862 11293397 -132989092 - MER74A LTR ERVL 0 558 11 28 29 0 0 chr12 11293534 11293569 -132988920 + AT_rich Low_complexity Low_complexity 1 35 0 402 264 0 0 chr12 11294247 11294368 -132988121 - L1MA4 LINE L1 -4 6296 6176 1751 152 47 3 chr12 11295185 11295481 -132987008 - Tigger3b DNA MER2_type 0 1231 923 2081 122 54 20 chr12 11295481 11295833 -132986656 - THE1C LTR MaLR 0 375 12 5109 134 23 58 chr12 11295863 11296818 -132985671 - Tigger3b DNA MER2_type -307 924 3 595 287 97 36 chr12 11297069 11297316 -132985173 - MIR SINE MIR 0 262 1 271 340 46 31 chr12 11297598 11297792 -132984697 + L2 LINE L2 2093 2289 -1025 184 346 70 77 chr12 11298252 11298524 -132983965 + L2 LINE L2 2808 3077 -195 727 184 22 7 chr12 11298562 11298698 -132983791 - MLT1A1 LTR MaLR -223 142 5 293 176 0 135 chr12 11298683 11298793 -132983696 + AluJ/FRAM SINE Alu 219 318 0 * 303 296 23 89 chr12 11299080 11299262 -132983227 - MLT1J LTR MaLR -88 527 247 63 57 0 0 chr12 11300184 11300289 -132982200 + AT_rich Low_complexity Low_complexity 1 105 0 311 352 117 5 chr12 11300297 11300493 -132981996 - L3 LINE CR1 -219 1358 1141 1733 167 7 0 chr12 11302092 11302374 -132980115 - AluJb SINE Alu -28 284 1 383 301 60 20 chr12 11303387 11303586 -132978903 - L1M4 LINE L1 -3403 2743 2537 204 135 0 0 chr12 11304307 11304344 -132978145 + (CAGAGA)n Simple_repeat Simple_repeat 6 42 0 475 154 44 11 chr12 11305848 11305939 -132976550 + MER53 DNA DNA 1 94 -95 607 169 140 0 chr12 11306394 11306530 -132975959 + L1MA10 LINE L1 6178 6332 -2 1947 123 31 0 chr12 11306960 11307253 -132975236 - AluSp SINE Alu -11 302 1 23 0 0 0 chr12 11308064 11308087 -132974402 + AT_rich Low_complexity Low_complexity 1 23 0 829 127 8 0 chr12 11310808 11310926 -132971563 + AluSg/x SINE Alu 168 286 -26 25 0 0 0 chr12 11310926 11310951 -132971538 + AT_rich Low_complexity Low_complexity 1 25 0 526 303 29 62 chr12 11313439 11313713 -132968776 + ERVL LTR ERVL 1172 1436 -4328 276 336 82 0 chr12 11315494 11315616 -132966873 + L2 LINE L2 216 347 -2967 448 252 92 25 chr12 11315627 11316039 -132966450 - Charlie4a DNA MER1_type -2 506 47 363 235 9 160 chr12 11316093 11316208 -132966281 + L2 LINE L2 406 476 -2838 781 196 0 0 chr12 11316208 11316341 -132966148 - FLAM_C SINE Alu 0 133 1 363 235 9 160 chr12 11316341 11316438 -132966051 + L2 LINE L2 476 586 -2728 247 89 0 22 chr12 11316624 11316669 -132965820 - L1MA4 LINE L1 -9 6291 6248 453 324 109 17 chr12 11316936 11317174 -132965315 + MIR SINE MIR 3 262 0 1145 237 41 36 chr12 11317310 11317673 -132964816 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr12 11317929 11317951 -132964538 + AT_rich Low_complexity Low_complexity 1 22 0 1367 252 42 19 chr12 11318200 11318625 -132963864 + L1 LINE L1 4290 4724 -1422 627 51 0 0 chr12 11318639 11318718 -132963771 + (TA)n Simple_repeat Simple_repeat 1 79 0 267 241 0 17 chr12 11319203 11319261 -132963228 + MLT1K LTR MaLR 186 242 -346 462 267 37 15 chr12 11319262 11319397 -132963092 + L2 LINE L2 3176 3313 0 4237 206 35 28 chr12 11320028 11320213 -132962276 + L1MB4 LINE L1 4565 4747 -1433 266 114 0 0 chr12 11320213 11320248 -132962241 + U2 snRNA snRNA 1 35 -153 4237 206 35 28 chr12 11320248 11321649 -132960840 + L1MB4 LINE L1 4747 6178 -2 645 128 32 24 chr12 11322047 11322202 -132960287 + L1MA4A LINE L1 6164 6319 0 263 312 141 13 chr12 11322522 11322820 -132959669 + L1M4 LINE L1 2708 3043 -3103 1596 141 20 37 chr12 11322870 11323169 -132959320 + L1PA16 LINE L1 5864 6157 -9 25 51 0 0 chr12 11323169 11323208 -132959281 + AT_rich Low_complexity Low_complexity 1 39 0 643 160 9 0 chr12 11323510 11323616 -132958873 - LTR47A LTR ERVL 0 452 346 1866 142 9 9 chr12 11323631 11323954 -132958535 - L1PB3 LINE L1 -2 6152 5830 326 119 48 0 chr12 11323962 11324046 -132958443 + (TA)n Simple_repeat Simple_repeat 1 88 0 409 138 161 11 chr12 11324066 11324153 -132958336 - LTR47A LTR ERVL -92 360 261 2536 128 70 26 chr12 11324407 11324907 -132957582 - L1MA5A LINE L1 -17 6280 5759 525 288 75 87 chr12 11324908 11325481 -132957008 + L1ME LINE L1 237 802 -5317 318 299 78 13 chr12 11326093 11326247 -132956242 + L1ME LINE L1 5247 5410 -2381 243 349 116 46 chr12 11326452 11326779 -132955710 + L2 LINE L2 2875 3224 -48 303 288 27 14 chr12 11326842 11326988 -132955501 + L1ME LINE L1 5693 5840 -264 219 188 0 0 chr12 11327359 11327407 -132955082 + (TG)n Simple_repeat Simple_repeat 1 48 0 24 0 0 0 chr12 11329672 11329696 -132952793 + AT_rich Low_complexity Low_complexity 1 24 0 375 365 13 19 chr12 11329867 11330023 -132952466 - L2 LINE L2 0 3313 3159 285 271 75 53 chr12 11330064 11330197 -132952292 - MIR SINE MIR -8 254 119 1289 260 133 26 chr12 11330524 11331244 -132951245 + L1MEd LINE L1 2120 2962 -3167 1367 140 21 49 chr12 11331244 11331487 -132951002 - MER46A DNA MER2_type 0 236 1 1289 260 133 26 chr12 11331487 11331693 -132950796 + L1MEd LINE L1 2962 3145 -2984 1693 140 3 46 chr12 11331771 11332056 -132950433 + AluJo SINE Alu 3 275 -37 315 49 0 0 chr12 11332059 11332100 -132950389 + (TC)n Simple_repeat Simple_repeat 2 42 0 * 405 70 28 14 chr12 11332099 11332170 -132950319 + (TA)n Simple_repeat Simple_repeat 1 72 0 310 238 133 0 chr12 11332252 11332357 -132950132 + L1MEd LINE L1 3672 3790 -2339 1041 246 39 26 chr12 11332371 11332877 -132949612 + L1MEc LINE L1 2115 2590 -3625 596 209 99 22 chr12 11332900 11333059 -132949430 + MLT1A1 LTR MaLR 1 139 -226 412 149 0 0 chr12 11333176 11333250 -132949239 + AluS SINE Alu 232 305 -4 2225 68 7 0 chr12 11333483 11333834 -132948655 - AluY SINE Alu 0 353 1 23 33 0 0 chr12 11334344 11334374 -132948115 + AT_rich Low_complexity Low_complexity 1 30 0 1473 17 6 11 chr12 11335121 11335341 -132947148 + L1PA2 LINE L1 5971 6189 0 187 245 57 0 chr12 11335773 11335826 -132946663 + L2 LINE L2 2323 2378 -936 1150 173 0 28 chr12 11335832 11336046 -132946443 + AluJo SINE Alu 28 235 -77 215 226 0 21 chr12 11336175 11336268 -132946221 + (CATATA)n Simple_repeat Simple_repeat 2 92 0 5752 151 27 6 chr12 11336359 11337456 -132945033 - L1MA5 LINE L1 -2 6298 5182 22 70 0 0 chr12 11337554 11337597 -132944892 + AT_rich Low_complexity Low_complexity 1 43 0 580 328 59 11 chr12 11338747 11339034 -132943455 - LTR16B LTR ERVL -51 413 113 2550 154 20 18 chr12 11339078 11339532 -132942957 - MER67C LTR ERV1 0 710 256 1985 280 15 36 chr12 11339773 11340304 -132942185 + MLT1G LTR MaLR 1 542 -48 1141 118 70 0 chr12 11340304 11340491 -132941998 + L1PA11 LINE L1 5972 6171 -3 189 0 0 0 chr12 11340496 11340517 -132941972 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1985 280 15 36 chr12 11340517 11340582 -132941907 + MLT1G LTR MaLR 546 590 0 1987 173 23 45 chr12 11340631 11341116 -132941373 + L1MB8 LINE L1 5695 6168 -10 252 246 0 0 chr12 11341547 11341604 -132940885 - L1M4 LINE L1 -1198 4948 4892 918 10 0 0 chr12 11341682 11341785 -132940704 - L1PA5 LINE L1 -8 6146 6044 201 74 0 0 chr12 11342077 11342104 -132940385 + (T)n Simple_repeat Simple_repeat 1 27 0 578 248 89 9 chr12 11342265 11342479 -132940010 + L1MDa LINE L1 1903 2133 -4407 194 247 56 45 chr12 11342545 11342634 -132939855 - L2 LINE L2 -1103 2211 2122 2243 150 58 27 chr12 11342707 11342747 -132939742 - MSTB LTR MaLR 0 426 389 2267 91 0 3 chr12 11342747 11343054 -132939435 + AluSc SINE Alu 1 306 -3 2243 150 58 27 chr12 11343054 11343302 -132939187 - MSTB LTR MaLR -37 389 119 1219 146 75 0 chr12 11343302 11343515 -132938974 + MER30 DNA MER1_type 1 229 -1 2243 150 58 27 chr12 11343515 11343638 -132938851 - MSTB LTR MaLR -307 119 1 22 99 0 0 chr12 11343747 11343818 -132938671 + AT_rich Low_complexity Low_complexity 1 71 0 5022 248 107 35 chr12 11343898 11344806 -132937683 - L1MDa LINE L1 -3982 2558 1717 1319 199 23 84 chr12 11344806 11345199 -132937290 + MLT1A2 LTR MaLR 4 372 -2 5022 248 107 35 chr12 11345199 11346575 -132935914 - L1MDa LINE L1 -4823 1717 19 192 374 38 57 chr12 11346745 11346956 -132935533 - L3 LINE CR1 -3 1574 1368 24 32 0 0 chr12 11347013 11347044 -132935445 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr12 11347144 11347186 -132935303 + AT_rich Low_complexity Low_complexity 1 42 0 737 236 80 125 chr12 11347212 11347627 -132934862 - MLT1A1 LTR MaLR 0 365 1 783 149 26 32 chr12 11347627 11347781 -132934708 - MLT1A1-int LTR MaLR 0 1735 1583 295 254 24 56 chr12 11349019 11349145 -132933344 + L1MC/D LINE L1 5699 5820 -1988 223 323 40 57 chr12 11349737 11349861 -132932628 - MER5A DNA MER1_type -25 164 43 * 337 328 15 23 chr12 11349755 11349886 -132932603 + MER5A DNA MER1_type 54 183 -6 22 0 0 0 chr12 11350596 11350618 -132931871 + AT_rich Low_complexity Low_complexity 1 22 0 297 276 57 88 chr12 11351874 11352171 -132930318 + L2 LINE L2 2591 2878 -436 24 0 0 0 chr12 11352235 11352259 -132930230 + AT_rich Low_complexity Low_complexity 1 24 0 734 262 83 59 chr12 11354675 11354736 -132927753 + L2 LINE L2 2334 2392 -922 1607 175 22 64 chr12 11354736 11355141 -132927348 - MLT1B LTR MaLR -2 388 1 734 262 83 59 chr12 11355141 11355453 -132927036 + L2 LINE L2 2392 2716 -598 766 324 74 68 chr12 11355453 11356119 -132926370 + L1MA4A LINE L1 1 1058 -6151 275 189 84 42 chr12 11356354 11356449 -132926040 + L1MA4A LINE L1 1050 1148 -6061 3766 264 113 13 chr12 11356463 11357760 -132924729 + L1M2b LINE L1 512 1937 -5272 2411 164 37 0 chr12 11357762 11358171 -132924318 + MSTA LTR MaLR 5 428 0 8621 178 26 5 chr12 11358171 11359787 -132922702 + MSTA-int LTR MaLR 1 1370 -1 2254 166 43 17 chr12 11359788 11360205 -132922284 + MSTA LTR MaLR 1 428 0 3441 166 20 1 chr12 11360205 11360935 -132921554 + L1M2b LINE L1 1943 2686 -4523 7945 196 12 12 chr12 11360947 11362487 -132920002 + L1 LINE L1 19 1558 -6007 8031 181 23 13 chr12 11362500 11363656 -132918833 + L1 LINE L1 4402 5584 -1981 753 98 0 0 chr12 11363656 11363768 -132918721 + (GGGGA)n Simple_repeat Simple_repeat 2 113 0 8031 181 23 13 chr12 11363768 11364404 -132918085 + L1 LINE L1 5584 6212 -1353 1861 146 6 1 chr12 11364406 11364753 -132917736 + LTR25 LTR ERV1 378 566 -3 245 245 21 21 chr12 11364765 11364859 -132917630 + L1 LINE L1 6461 6554 -1011 1847 211 95 4 chr12 11364873 11365399 -132917090 + L1M2b LINE L1 2674 3247 -3962 4807 194 63 41 chr12 11365401 11368352 -132914137 + L1MA4A LINE L1 2720 7354 -11 336 217 83 50 chr12 11368477 11368597 -132913892 - MLT1E2 LTR MaLR -487 139 16 589 246 154 44 chr12 11369077 11369643 -132912846 + HAL1 LINE L1 724 1351 -1156 304 247 0 0 chr12 11369662 11369739 -132912750 - MER115 DNA AcHobo -12 681 605 4008 233 43 27 chr12 11370035 11371134 -132911355 - L1M3f LINE L1 -4205 1123 8 6447 242 39 21 chr12 11371253 11372468 -132910021 + L1PB4 LINE L1 946 2138 -4710 309 0 0 0 chr12 11372468 11372508 -132909981 + L1PA3 LINE L1 6113 6152 -3 6447 242 39 21 chr12 11372508 11374242 -132908247 + L1PB4 LINE L1 2138 3951 -2897 320 194 19 87 chr12 11374248 11374351 -132908138 - L1MC4 LINE L1 -1339 6703 6608 3506 210 37 50 chr12 11374364 11375346 -132907143 + L1PB4 LINE L1 3966 4931 -1917 1289 101 5 0 chr12 11375346 11375534 -132906955 + L1PA13 LINE L1 5971 6159 -4 3506 210 37 50 chr12 11375534 11375741 -132906748 + L1PB4 LINE L1 4931 5139 -1709 209 396 43 0 chr12 11375742 11375881 -132906608 + MIR SINE MIR 67 211 -51 793 213 117 35 chr12 11375960 11376335 -132906154 - L1MDa LINE L1 -3986 2554 2149 541 189 226 12 chr12 11376337 11376501 -132905988 - MLT1D LTR MaLR -58 447 249 201 125 0 50 chr12 11376579 11376619 -132905870 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1370 263 65 33 chr12 11376628 11377412 -132905077 - L1MDa LINE L1 -4471 2069 1261 292 266 13 0 chr12 11377652 11377731 -132904758 - HERVL40 LTR ERVL -3401 2129 2050 1203 235 9 31 chr12 11378076 11378395 -132904094 + AluJb SINE Alu 1 312 0 266 360 73 22 chr12 11378612 11378884 -132903605 - HERVL40 LTR ERVL -4210 1320 1035 4642 207 35 4 chr12 11379082 11380166 -132902323 - HSMAR2 DNA Mariner -179 1123 6 251 213 100 12 chr12 11381022 11381102 -132901387 + HAL1 LINE L1 1272 1358 -1149 254 313 0 0 chr12 11381103 11381199 -132901290 - Zaphod DNA AcHobo -1 4030 3935 2927 206 35 44 chr12 11381531 11382437 -132900052 + L1PB4 LINE L1 5957 6854 -4 2172 100 0 0 chr12 11382458 11382780 -132899709 + AluSg SINE Alu 1 322 0 193 206 15 15 chr12 11382816 11382884 -132899605 + GA-rich Low_complexity Low_complexity 3 70 0 250 296 102 58 chr12 11383156 11383362 -132899127 - MIR SINE MIR -26 236 22 343 227 40 90 chr12 11384221 11384498 -132897991 + L1ME4a LINE L1 5688 5950 -171 196 301 82 82 chr12 11384887 11385033 -132897456 - MER5A DNA MER1_type -1 188 43 526 327 50 29 chr12 11389689 11389970 -132892519 + L2 LINE L2 2498 2784 -530 1242 116 0 6 chr12 11390408 11390581 -132891908 - AluSg/x SINE Alu -12 300 129 816 252 139 25 chr12 11390882 11391235 -132891254 - MLT1D LTR MaLR -101 404 12 868 215 74 3 chr12 11391451 11391735 -132890754 - L1ME LINE L1 -3986 2094 1791 492 204 35 9 chr12 11391746 11391859 -132890630 - MLT1D LTR MaLR -56 449 334 2046 247 48 41 chr12 11391917 11392938 -132889551 - L1ME LINE L1 -4400 1680 655 288 289 109 19 chr12 11393103 11393259 -132889230 - HERVL40 LTR ERVL -3913 1617 1448 282 29 0 0 chr12 11393271 11393306 -132889183 + (TG)n Simple_repeat Simple_repeat 1 35 0 1015 209 0 15 chr12 11393480 11393676 -132888813 + AluJo SINE Alu 3 195 -117 234 128 0 0 chr12 11393681 11393720 -132888769 + (GGGGA)n Simple_repeat Simple_repeat 5 43 0 500 339 64 24 chr12 11393850 11394148 -132888341 - HERVL40 LTR ERVL -4164 1366 1057 260 250 0 0 chr12 11394849 11394913 -132887576 - LTR40a LTR ERVL -353 166 103 470 206 21 0 chr12 11395987 11396084 -132886405 - MER20 DNA MER1_type -6 213 115 307 175 0 16 chr12 11396089 11396152 -132886337 - MER53 DNA DNA -2 187 126 300 135 10 104 chr12 11396255 11396351 -132886138 - MER53 DNA DNA -100 89 3 453 167 88 10 chr12 11396355 11396457 -132886032 - MER20 DNA MER1_type -109 110 1 2482 71 3 0 chr12 11399366 11399663 -132882826 + AluSx SINE Alu 1 298 -14 1054 288 78 6 chr12 11399677 11400021 -132882468 + MLT1G LTR MaLR 5 373 -217 230 175 0 0 chr12 11400025 11400065 -132882424 + MER3 DNA MER1_type 44 83 -126 * 666 207 45 39 chr12 11400034 11400213 -132882276 - MER3 DNA MER1_type -5 204 25 751 262 5 42 chr12 11400247 11400390 -132882099 + MLT1G LTR MaLR 374 508 -82 2019 153 98 23 chr12 11400390 11400788 -132881701 - MSTA LTR MaLR 0 428 1 751 262 5 42 chr12 11400788 11400858 -132881631 + MLT1G LTR MaLR 508 579 -11 975 290 57 44 chr12 11401375 11401834 -132880655 - L2 LINE L2 -21 3292 2828 1693 188 3 22 chr12 11401843 11402210 -132880279 + MSTB2-int LTR MaLR 1285 1644 -7 2307 177 24 31 chr12 11402216 11402674 -132879815 + MSTB2 LTR MaLR 1 455 -2 454 305 114 8 chr12 11402674 11402915 -132879574 + L1M4 LINE L1 3339 3605 -2541 12167 173 22 14 chr12 11402917 11406368 -132876121 + L1PB3 LINE L1 71 3312 -3537 6138 189 18 59 chr12 11406375 11408101 -132874388 + L1PB3 LINE L1 4654 6451 -406 236 132 0 0 chr12 11408101 11408139 -132874350 - Alu SINE Alu -7 295 258 6138 189 18 59 chr12 11408139 11408743 -132873746 + L1PB3 LINE L1 6451 6639 -218 2134 126 3 0 chr12 11408271 11408565 -132873924 + AluSx SINE Alu 1 295 -17 482 256 36 70 chr12 11408565 11408794 -132873695 + L1ME2 LINE L1 5770 5988 -176 2488 219 49 66 chr12 11409234 11409379 -132873110 + L1ME2 LINE L1 5124 5270 -914 2126 130 39 30 chr12 11409379 11409740 -132872749 + THE1B LTR MaLR 1 364 0 2488 219 49 66 chr12 11409740 11410396 -132872093 + L1ME2 LINE L1 5270 5922 -262 186 43 0 0 chr12 11410396 11410419 -132872070 + (TG)n Simple_repeat Simple_repeat 2 24 0 2488 219 49 66 chr12 11410419 11410677 -132871812 + L1ME2 LINE L1 5922 6183 -1 1618 122 47 111 chr12 11413014 11413227 -132869262 - MER44D DNA MER2_type -1882 609 384 788 169 0 0 chr12 11413227 11413357 -132869132 + FLAM_C SINE Alu 2 131 -2 1618 122 47 111 chr12 11413357 11413505 -132868984 - MER44D DNA MER2_type -2107 384 1 1135 221 88 17 chr12 11413598 11414006 -132868483 + Zaphod DNA AcHobo 3569 4005 -26 21 0 0 0 chr12 11414271 11414292 -132868197 + AT_rich Low_complexity Low_complexity 1 21 0 389 265 35 30 chr12 11414426 11414626 -132867863 - L1 LINE L1 -2348 3798 3598 584 274 51 34 chr12 11414875 11415171 -132867318 - L1ME3A LINE L1 -215 5955 5655 344 252 82 13 chr12 11415521 11415680 -132866809 - L1ME3A LINE L1 -3138 3008 2839 773 303 36 24 chr12 11415703 11416073 -132866416 - L1ME3A LINE L1 -3417 2729 2350 2118 86 0 7 chr12 11416073 11416353 -132866136 + AluY SINE Alu 16 293 -18 773 303 36 24 chr12 11416353 11416487 -132866002 - L1ME3A LINE L1 -3796 2350 2219 287 348 101 19 chr12 11416554 11416870 -132865619 + MLT1I LTR MaLR 61 402 -7 2340 172 23 9 chr12 11417160 11417595 -132864894 - MER65A LTR ERV1 0 445 5 2218 89 0 0 chr12 11417733 11418045 -132864444 + AluY SINE Alu 1 312 0 618 264 108 31 chr12 11418530 11418837 -132863652 + MER93b LTR ERV1 63 373 0 2432 122 5 19 chr12 11418855 11419224 -132863265 - THE1B LTR MaLR 0 364 1 1340 203 78 0 chr12 11419652 11419769 -132862720 + AluJb SINE Alu 1 107 -205 362 21 21 0 chr12 11419769 11419816 -132862673 + (TAAAA)n Simple_repeat Simple_repeat 5 52 0 1340 203 78 0 chr12 11419816 11419954 -132862535 + AluJb SINE Alu 107 276 -36 266 260 0 13 chr12 11419954 11420031 -132862458 + (TA)n Simple_repeat Simple_repeat 2 77 0 24 0 0 0 chr12 11420170 11420194 -132862295 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 11420224 11420245 -132862244 + AT_rich Low_complexity Low_complexity 1 21 0 913 165 30 198 chr12 11420664 11420912 -132861577 + MSTB2 LTR MaLR 160 312 -120 2465 96 14 6 chr12 11420912 11421268 -132861221 + L1PA10 LINE L1 5798 6156 -12 913 165 30 198 chr12 11421268 11421372 -132861117 + MSTB2 LTR MaLR 312 432 0 27 73 0 0 chr12 11421712 11421767 -132860722 + AT_rich Low_complexity Low_complexity 1 55 0 1322 210 39 7 chr12 11422783 11423069 -132859420 - AluJb SINE Alu -6 306 12 254 292 45 26 chr12 11423103 11423257 -132859232 - L1M4 LINE L1 -1426 4720 4564 534 330 158 35 chr12 11423421 11424502 -132857987 - L1M4 LINE L1 -1771 4375 3155 228 67 0 0 chr12 11424502 11424532 -132857957 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 534 330 158 35 chr12 11424532 11424549 -132857940 - L1M4 LINE L1 -2991 3155 3141 289 333 60 55 chr12 11424581 11424650 -132857839 + MIR SINE MIR 55 122 -140 1683 172 3 17 chr12 11424650 11424952 -132857537 - AluJb SINE Alu -10 302 5 289 333 60 55 chr12 11424952 11425083 -132857406 + MIR SINE MIR 122 256 -6 339 289 109 39 chr12 11425413 11425697 -132856792 - L1M4 LINE L1 -3415 2731 2428 2823 13 0 0 chr12 11425705 11426014 -132856475 - AluYb8 SINE Alu -9 309 1 2203 107 0 10 chr12 11426015 11426315 -132856174 - AluSq SINE Alu -16 297 1 228 250 140 0 chr12 11426621 11426721 -132855768 - L1M4 LINE L1 -3860 2286 2173 2484 44 27 0 chr12 11426877 11427173 -132855316 - AluY SINE Alu -7 304 1 397 200 149 70 chr12 11427193 11427408 -132855081 - MLT1B LTR MaLR -6 561 330 3861 73 0 2 chr12 11427411 11427945 -132854544 - L1P LINE L1 -2518 3628 3096 1045 156 11 6 chr12 11427951 11428130 -132854359 + MER61E LTR ERV1 339 518 -51 197 279 48 58 chr12 11428775 11428879 -132853610 + MIR SINE MIR 114 216 -46 522 319 43 33 chr12 11429355 11429656 -132852833 - L2 LINE L2 -530 2784 2481 243 180 0 20 chr12 11429727 11429777 -132852712 + MLT1C LTR MaLR 24 72 -395 329 306 8 0 chr12 11434708 11434829 -132847660 - L1MC/D LINE L1 -1988 5820 5699 27 0 0 0 chr12 11436530 11436557 -132845932 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr12 11436878 11436899 -132845590 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 11437344 11437367 -132845122 + AT_rich Low_complexity Low_complexity 1 23 0 29 47 0 0 chr12 11438223 11438266 -132844223 + AT_rich Low_complexity Low_complexity 1 43 0 625 220 7 110 chr12 11439287 11439569 -132842920 - L1ME1 LINE L1 -9 6157 5905 747 205 80 35 chr12 11439570 11439770 -132842719 - MLT1B LTR MaLR -181 209 1 261 0 0 0 chr12 11440091 11440120 -132842369 + (TC)n Simple_repeat Simple_repeat 2 30 0 189 107 0 0 chr12 11440119 11440147 -132842342 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 269 237 17 0 chr12 11440159 11440218 -132842271 - HsTC2 DNA Tc2 -2 1896 1837 373 305 84 57 chr12 11440219 11440622 -132841867 + L1M4 LINE L1 3843 4256 -1890 1117 184 0 93 chr12 11442567 11442899 -132839590 + L1MA7 LINE L1 5991 6291 0 43 0 0 0 chr12 11444419 11444462 -132838027 + AT_rich Low_complexity Low_complexity 1 43 0 3209 181 7 3 chr12 11444462 11445046 -132837443 - L1PBa LINE L1 -4939 1924 1339 2166 208 121 8 chr12 11445075 11445581 -132836908 - L1PBa LINE L1 -5706 1157 595 1697 268 46 2 chr12 11445591 11446117 -132836372 - L1PBa LINE L1 -6309 554 6 16798 193 32 10 chr12 11446131 11448172 -132834317 - L1P4 LINE L1 -673 6926 4930 7299 101 7 18 chr12 11448172 11449255 -132833234 - MER11C LTR ERVK 0 1071 1 16798 193 32 10 chr12 11449255 11452334 -132830155 - L1P4 LINE L1 -2669 4930 1690 27 62 0 0 chr12 11452513 11452561 -132829928 + AT_rich Low_complexity Low_complexity 1 48 0 423 274 34 15 chr12 11452964 11453113 -132829376 - L1ME3A LINE L1 -333 5837 5679 30 59 0 0 chr12 11453289 11453340 -132829149 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr12 11453425 11453447 -132829042 + AT_rich Low_complexity Low_complexity 1 22 0 302 326 76 12 chr12 11454786 11454958 -132827531 + MIR SINE MIR 1 183 -79 736 259 45 37 chr12 11455261 11455640 -132826849 + L1M4 LINE L1 4585 4966 -1180 * 15359 222 35 13 chr12 11455631 11457347 -132825142 + L1PA15 LINE L1 1196 2873 -3943 1615 196 0 29 chr12 11457347 11457663 -132824826 - AluJb SINE Alu -5 307 1 15359 222 35 13 chr12 11457663 11461462 -132821027 + L1PA15 LINE L1 2873 6816 0 2270 296 65 10 chr12 11461490 11462349 -132820140 - L2 LINE L2 -245 3068 2156 230 169 0 84 chr12 11462350 11462421 -132820068 + L1M4 LINE L1 4942 5006 -1140 729 312 173 3 chr12 11462694 11463024 -132819465 - L2 LINE L2 -1115 2199 1814 1151 314 76 42 chr12 11463207 11464143 -132818346 + HERVL LTR ERVL 2334 3301 -2353 232 320 62 0 chr12 11464159 11464256 -132818233 - L2 LINE L2 -1203 2111 2009 264 333 14 0 chr12 11464310 11464382 -132818107 - MER45 DNA AcHobo -967 73 1 24 0 0 0 chr12 11465104 11465128 -132817361 + AT_rich Low_complexity Low_complexity 1 24 0 276 296 45 85 chr12 11465560 11465652 -132816837 - L2 LINE L2 0 3313 3230 2378 66 0 3 chr12 11465652 11465956 -132816533 - AluY SINE Alu -8 303 1 276 296 45 85 chr12 11465956 11466039 -132816450 - L2 LINE L2 -83 3230 3145 192 158 0 0 chr12 11468885 11468923 -132813566 + (CA)n Simple_repeat Simple_repeat 2 39 0 2498 61 0 6 chr12 11469720 11470033 -132812456 + AluY SINE Alu 1 311 0 23 33 0 0 chr12 11470211 11470241 -132812248 + AT_rich Low_complexity Low_complexity 1 30 0 261 0 0 0 chr12 11470511 11470540 -132811949 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1214 118 21 0 chr12 11470808 11470994 -132811495 + AluSg/x SINE Alu 120 309 -3 1849 226 60 93 chr12 11471569 11472383 -132810106 - LTR1B LTR ERV1 -39 787 1 2005 131 0 7 chr12 11472683 11472986 -132809503 - AluSx SINE Alu 0 303 3 24 0 0 0 chr12 11473412 11473436 -132809053 + AT_rich Low_complexity Low_complexity 1 24 0 2231 100 3 7 chr12 11473442 11473752 -132808737 - AluSq SINE Alu -4 309 1 467 257 106 32 chr12 11474304 11474600 -132807889 - L1MB8 LINE L1 -333 5845 5512 31 76 0 0 chr12 11474642 11474708 -132807781 + AT_rich Low_complexity Low_complexity 1 66 0 33 0 0 0 chr12 11476029 11476062 -132806427 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr12 11476145 11476175 -132806314 + AT_rich Low_complexity Low_complexity 1 30 0 215 294 61 75 chr12 11476250 11476478 -132806011 + MIR SINE MIR 6 230 -32 776 271 50 21 chr12 11476732 11477112 -132805377 + L1M4 LINE L1 4576 4966 -1180 * 3895 225 7 11 chr12 11477103 11477934 -132804555 + L1PA15 LINE L1 1196 2023 -4764 15037 226 21 11 chr12 11477974 11481787 -132800702 + L1PA15 LINE L1 2306 6081 -736 279 0 0 0 chr12 11481787 11481818 -132800671 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 15037 226 21 11 chr12 11481818 11481880 -132800609 + L1PA15 LINE L1 6081 6141 -676 1735 158 0 0 chr12 11481880 11482155 -132800334 + L1PA15 LINE L1 6533 6811 -5 15037 226 21 11 chr12 11482155 11482186 -132800303 + L1PA15 LINE L1 6141 6243 -574 2125 309 78 9 chr12 11482257 11483024 -132799465 - L2 LINE L2 -338 2976 2157 234 182 80 68 chr12 11483027 11483115 -132799374 + L1M4 LINE L1 4942 5030 -1116 203 211 19 0 chr12 11483430 11483482 -132799007 + (TA)n Simple_repeat Simple_repeat 1 53 0 681 310 176 3 chr12 11483531 11483860 -132798629 - L2 LINE L2 -1115 2199 1814 312 356 41 26 chr12 11483953 11484220 -132798269 + ERVL LTR ERVL 1774 2044 -3720 2323 97 3 3 chr12 11484252 11484560 -132797929 - AluSx SINE Alu -4 308 1 1454 230 10 0 chr12 11484575 11484871 -132797618 - AluJo SINE Alu -3 309 11 874 329 78 44 chr12 11484883 11486124 -132796365 + ERVL LTR ERVL 2015 3299 -1900 308 254 9 140 chr12 11486124 11486238 -132796251 - MER45 DNA AcHobo -1482 99 1 440 292 43 43 chr12 11487383 11487544 -132794945 - L2 LINE L2 0 3313 3153 240 35 0 0 chr12 11490425 11490454 -132792035 + (GA)n Simple_repeat Simple_repeat 2 30 0 22 56 0 0 chr12 11490655 11490691 -132791798 + AT_rich Low_complexity Low_complexity 1 36 0 250 307 0 61 chr12 11491957 11492071 -132790418 + C-rich Low_complexity Low_complexity 1 107 0 252 296 102 58 chr12 11492965 11493171 -132789318 + MIR SINE MIR 22 236 -26 193 206 15 15 chr12 11493443 11493511 -132788978 + CT-rich Low_complexity Low_complexity 3 70 0 2071 107 0 14 chr12 11493547 11493875 -132788614 - AluSx SINE Alu 0 324 1 228 250 140 0 chr12 11494181 11494281 -132788208 - L1M4 LINE L1 -3860 2286 2173 2429 51 27 0 chr12 11494437 11494733 -132787756 - AluY SINE Alu -7 304 1 386 200 153 74 chr12 11494753 11494968 -132787521 - MLT1B LTR MaLR -6 561 330 3861 73 0 2 chr12 11494971 11495505 -132786984 - L1P LINE L1 -2518 3628 3096 1045 156 11 6 chr12 11495511 11495690 -132786799 + MER61E LTR ERV1 339 518 -51 197 279 48 58 chr12 11496335 11496439 -132786050 + MIR SINE MIR 114 216 -46 522 319 43 33 chr12 11496915 11497216 -132785273 - L2 LINE L2 -530 2784 2481 243 180 0 20 chr12 11497287 11497337 -132785152 + MLT1B LTR MaLR 24 72 -318 329 306 8 0 chr12 11502268 11502389 -132780100 - L1MC/D LINE L1 -1988 5820 5699 27 0 0 0 chr12 11504090 11504117 -132778372 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr12 11504438 11504459 -132778030 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 11504904 11504927 -132777562 + AT_rich Low_complexity Low_complexity 1 23 0 29 47 0 0 chr12 11505783 11505826 -132776663 + AT_rich Low_complexity Low_complexity 1 43 0 625 220 7 110 chr12 11506847 11507129 -132775360 - L1ME1 LINE L1 -9 6157 5905 747 205 80 35 chr12 11507130 11507330 -132775159 - MLT1B LTR MaLR -181 209 1 261 0 0 0 chr12 11507651 11507680 -132774809 + (TC)n Simple_repeat Simple_repeat 2 30 0 189 107 0 0 chr12 11507679 11507707 -132774782 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 269 237 17 0 chr12 11507719 11507778 -132774711 - HsTC2 DNA Tc2 -2 1896 1837 373 305 84 57 chr12 11507779 11508182 -132774307 + L1M4 LINE L1 3843 4256 -1890 1077 175 18 109 chr12 11510127 11510458 -132772031 + L1MA7 LINE L1 5991 6291 0 43 0 0 0 chr12 11511978 11512021 -132770468 + AT_rich Low_complexity Low_complexity 1 43 0 3209 181 7 3 chr12 11512021 11512605 -132769884 - L1PBa LINE L1 -4939 1924 1339 2166 208 121 8 chr12 11512634 11513140 -132769349 - L1PBa LINE L1 -5706 1157 595 1697 268 46 2 chr12 11513150 11513676 -132768813 - L1PBa LINE L1 -6309 554 6 16745 194 32 11 chr12 11513690 11515731 -132766758 - L1P4 LINE L1 -673 6926 4929 7299 101 7 18 chr12 11515731 11516814 -132765675 - MER11C LTR ERVK 0 1071 1 16745 194 32 11 chr12 11516814 11519894 -132762595 - L1P4 LINE L1 -2670 4929 1690 27 62 0 0 chr12 11520073 11520121 -132762368 + AT_rich Low_complexity Low_complexity 1 48 0 423 274 34 15 chr12 11520524 11520673 -132761816 - L1ME3A LINE L1 -333 5837 5679 30 59 0 0 chr12 11520849 11520900 -132761589 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr12 11520985 11521007 -132761482 + AT_rich Low_complexity Low_complexity 1 22 0 309 337 76 12 chr12 11522346 11522518 -132759971 + MIR SINE MIR 1 183 -79 736 259 45 37 chr12 11522821 11523200 -132759289 + L1M4 LINE L1 4585 4966 -1180 * 15295 222 34 13 chr12 11523191 11524907 -132757582 + L1PA15 LINE L1 1196 2874 -3942 1615 196 0 29 chr12 11524907 11525223 -132757266 - AluJb SINE Alu -5 307 1 15295 222 34 13 chr12 11525223 11529023 -132753466 + L1PA15 LINE L1 2874 6816 0 2023 304 62 30 chr12 11529051 11529928 -132752561 - L2 LINE L2 -245 3068 2157 247 202 0 48 chr12 11529932 11530016 -132752473 + L1M4 LINE L1 4942 5021 -1125 668 323 159 3 chr12 11530413 11530747 -132751742 - L2 LINE L2 -1115 2199 1814 322 329 39 43 chr12 11530829 11531084 -132751405 + HERVL LTR ERVL 1716 1969 -3027 885 186 61 84 chr12 11531158 11531421 -132751068 - AluJo SINE Alu -14 298 42 311 256 98 74 chr12 11531684 11531887 -132750602 + MIR SINE MIR 5 212 -50 1587 167 45 7 chr12 11531988 11532276 -132750213 - AluJo SINE Alu -13 299 1 1342 246 22 16 chr12 11532464 11532915 -132749574 + L1M4 LINE L1 4576 5029 -1117 21 57 0 0 chr12 11533056 11533091 -132749398 + AT_rich Low_complexity Low_complexity 1 35 0 1322 219 14 7 chr12 11533158 11533446 -132749043 - AluJb SINE Alu -18 294 5 583 338 180 3 chr12 11533603 11533931 -132748558 - L2 LINE L2 -1115 2199 1814 3025 186 57 58 chr12 11534257 11534982 -132747507 + MER50 LTR ERV1 3 726 -8 1020 223 3 94 chr12 11535100 11535190 -132747299 - AluJo SINE Alu -23 289 192 1578 183 68 122 chr12 11535190 11535836 -132746653 + LTR36 LTR ERV1 1 611 0 1020 223 3 94 chr12 11535836 11536063 -132746426 - AluJo SINE Alu -120 192 1 810 323 92 23 chr12 11536068 11536678 -132745811 + HERVL LTR ERVL 2018 2687 -2816 21 0 0 0 chr12 11536697 11536718 -132745771 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 11536898 11536922 -132745567 + AT_rich Low_complexity Low_complexity 1 24 0 1716 144 10 38 chr12 11536922 11537214 -132745275 - AluSx SINE Alu -27 285 2 250 333 0 0 chr12 11537251 11537338 -132745151 + HERVL LTR ERVL 2937 3023 -2631 404 312 0 7 chr12 11537410 11537548 -132744941 + HERVL LTR ERVL 3071 3207 -2557 273 329 12 0 chr12 11537692 11537774 -132744715 - MER45 DNA AcHobo -1495 86 4 620 298 27 18 chr12 11537946 11538171 -132744318 - LTR36 LTR ERV1 0 611 385 811 160 148 40 chr12 11538221 11538471 -132744018 - LTR36 LTR ERV1 -332 279 3 535 272 24 35 chr12 11539175 11539344 -132743145 - LTR38-int LTR ERV1 -1496 290 124 387 106 0 0 chr12 11539786 11539852 -132742637 + (TA)n Simple_repeat Simple_repeat 2 67 0 266 266 25 13 chr12 11543730 11543809 -132738680 - L1ME3 LINE L1 -81 6081 6002 544 283 72 13 chr12 11543919 11544237 -132738252 - L1ME3 LINE L1 -206 5956 5620 1603 70 14 5 chr12 11544445 11544659 -132737830 - AluY SINE Alu -13 298 83 270 239 122 55 chr12 11545028 11545266 -132737223 - L1MEd LINE L1 -4944 1175 922 1562 189 31 3 chr12 11545460 11545751 -132736738 - AluJo SINE Alu -13 299 1 1400 325 79 44 chr12 11545822 11546408 -132736081 + HERVL LTR ERVL 2096 2660 -2994 1620 199 0 0 chr12 11546408 11546715 -132735774 + AluJb SINE Alu 3 309 0 1400 325 79 44 chr12 11546715 11547286 -132735203 + HERVL LTR ERVL 2660 3295 -2359 233 344 0 0 chr12 11547290 11547351 -132735138 - MER45 DNA AcHobo -1482 99 39 21 57 0 0 chr12 11548632 11548667 -132733822 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 11550353 11550374 -132732115 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr12 11550721 11550755 -132731734 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 3238 128 14 8 chr12 11552638 11553146 -132729343 - MER9 LTR ERVK 0 511 1 26 0 0 0 chr12 11553184 11553210 -132729279 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr12 11553983 11554005 -132728484 + AT_rich Low_complexity Low_complexity 1 22 0 556 298 76 9 chr12 11554256 11554572 -132727917 - L1ME3 LINE L1 -206 5956 5620 253 215 136 63 chr12 11555150 11555341 -132727148 - L1MEd LINE L1 -4971 1148 944 183 80 0 0 chr12 11556243 11556268 -132726221 + (ATG)n Simple_repeat Simple_repeat 1 25 0 1912 148 3 0 chr12 11556397 11556680 -132725809 - AluSq SINE Alu -29 284 1 1068 50 47 285 chr12 11557357 11557655 -132724834 - AluY SINE Alu -5 306 80 212 147 0 0 chr12 11558564 11558598 -132723891 + (CA)n Simple_repeat Simple_repeat 2 35 0 304 293 48 54 chr12 11558963 11559110 -132723379 + MIR SINE MIR 5 150 -112 1687 175 3 3 chr12 11559110 11559401 -132723088 + AluSx SINE Alu 13 303 -9 1616 192 31 0 chr12 11559568 11559860 -132722629 - AluJo SINE Alu -11 301 1 1369 334 70 45 chr12 11559867 11560533 -132721956 + HERVL LTR ERVL 2019 2732 -2922 1503 189 48 0 chr12 11560533 11560803 -132721686 + AluJb SINE Alu 3 285 -27 1369 334 70 45 chr12 11560803 11561375 -132721114 + HERVL LTR ERVL 2732 3288 -2366 1866 100 4 4 chr12 11562446 11562707 -132719782 - AluSc SINE Alu -5 304 44 24 32 0 0 chr12 11563154 11563185 -132719304 + AT_rich Low_complexity Low_complexity 1 31 0 873 185 43 96 chr12 11564012 11564293 -132718196 + LTR12 LTR ERV1 1 266 -448 879 328 6 20 chr12 11564314 11564656 -132717833 + HERVL LTR ERVL 2832 3168 -2486 249 354 12 0 chr12 11564800 11564882 -132717607 - MER45 DNA AcHobo -954 86 4 562 281 34 17 chr12 11565054 11565232 -132717257 - LTR36 LTR ERV1 0 611 431 801 161 142 51 chr12 11565330 11565584 -132716905 - LTR36 LTR ERV1 -332 279 3 21 0 0 0 chr12 11566078 11566099 -132716390 + AT_rich Low_complexity Low_complexity 1 21 0 466 304 23 35 chr12 11566292 11566463 -132716026 - LTR38-int LTR ERV1 -1494 292 124 215 309 71 36 chr12 11566770 11566938 -132715551 - L2 LINE L2 -5 3308 3135 209 135 27 0 chr12 11566941 11566978 -132715511 + (TA)n Simple_repeat Simple_repeat 2 39 0 23 33 0 0 chr12 11569992 11570022 -132712467 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr12 11570794 11570816 -132711673 + AT_rich Low_complexity Low_complexity 1 22 0 251 260 26 13 chr12 11570877 11570954 -132711535 - L1ME3 LINE L1 -81 6081 6004 661 292 73 3 chr12 11571068 11571383 -132711106 - L1ME3 LINE L1 -206 5956 5620 31 76 0 0 chr12 11573033 11573099 -132709390 + AT_rich Low_complexity Low_complexity 1 66 0 467 257 106 32 chr12 11573141 11573437 -132709052 + L1ME3A LINE L1 5512 5845 -333 2231 100 3 7 chr12 11573989 11574299 -132708190 + AluSq SINE Alu 1 309 -4 24 0 0 0 chr12 11574305 11574329 -132708160 + AT_rich Low_complexity Low_complexity 1 24 0 2106 130 0 7 chr12 11574755 11575054 -132707435 + AluSx SINE Alu 3 299 -13 26 50 0 0 chr12 11575973 11576013 -132706476 + AT_rich Low_complexity Low_complexity 1 40 0 28 61 0 0 chr12 11576116 11576165 -132706324 + AT_rich Low_complexity Low_complexity 1 49 0 480 254 120 36 chr12 11576182 11576490 -132705999 + L1ME3A LINE L1 5499 5847 -331 216 97 0 0 chr12 11576783 11576814 -132705675 + (T)n Simple_repeat Simple_repeat 1 31 0 286 261 45 0 chr12 11576816 11576904 -132705585 + Charlie7 DNA MER1_type 2170 2261 -351 21 0 0 0 chr12 11577276 11577297 -132705192 + AT_rich Low_complexity Low_complexity 1 21 0 8982 52 5 2 chr12 11577297 11579222 -132703267 - L1PA5 LINE L1 0 6154 4222 1631 187 3 7 chr12 11579491 11579791 -132702698 - AluJb SINE Alu -13 299 1 27 29 0 0 chr12 11580001 11580035 -132702454 + AT_rich Low_complexity Low_complexity 1 34 0 378 245 20 41 chr12 11580588 11580735 -132701754 + MER50 LTR ERV1 575 718 -16 419 209 0 44 chr12 11580865 11580956 -132701533 - AluJ SINE Alu -23 289 203 800 171 5 37 chr12 11580956 11581143 -132701346 + LTR36 LTR ERV1 1 181 -430 832 254 84 25 chr12 11581311 11581369 -132701120 + LTR36 LTR ERV1 293 346 -265 1820 218 81 11 chr12 11581369 11581841 -132700648 + LTR22 LTR ERVK 1 505 -4 832 254 84 25 chr12 11581841 11582066 -132700423 + LTR36 LTR ERV1 346 593 -18 853 211 0 84 chr12 11582081 11582308 -132700181 - AluJ SINE Alu -104 208 1 714 345 63 25 chr12 11582385 11582939 -132699550 + ERVL LTR ERVL 2141 2715 -3049 1636 150 14 24 chr12 11583145 11583456 -132699033 - AluSx SINE Alu 0 308 1 1330 339 53 43 chr12 11583552 11584111 -132698378 + ERVL LTR ERVL 2132 2709 -2945 1595 197 0 0 chr12 11584111 11584395 -132698094 + AluJb SINE Alu 3 286 -26 1330 339 53 43 chr12 11584395 11584905 -132697584 + ERVL LTR ERVL 2709 3212 -2442 239 270 51 73 chr12 11586129 11586266 -132696223 - L2 LINE L2 0 3313 3180 22 80 0 0 chr12 11587262 11587312 -132695177 + AT_rich Low_complexity Low_complexity 1 50 0 205 163 47 0 chr12 11587432 11587475 -132695014 + (CATA)n Simple_repeat Simple_repeat 1 45 0 21 0 0 0 chr12 11588086 11588107 -132694382 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr12 11588351 11588399 -132694090 + AT_rich Low_complexity Low_complexity 1 48 0 1039 198 31 55 chr12 11588620 11588897 -132693592 + LTR10B LTR ERV1 312 547 0 403 239 27 12 chr12 11588897 11589038 -132693451 - L1ME LINE L1 -347 5823 5678 2040 139 0 25 chr12 11589359 11589705 -132692784 - AluY SINE Alu 0 338 1 279 277 54 61 chr12 11591069 11591217 -132691272 + MIR SINE MIR 5 151 -111 1661 161 11 3 chr12 11591217 11591502 -132690987 + AluSx SINE Alu 1 287 -25 1687 175 31 3 chr12 11591688 11591979 -132690510 - AluJo SINE Alu -13 299 1 1407 341 57 32 chr12 11592056 11592646 -132689843 + ERVL LTR ERVL 2141 2714 -3050 1291 203 0 28 chr12 11592646 11592961 -132689528 + AluJb SINE Alu 3 309 0 1407 341 57 32 chr12 11592961 11593539 -132688950 + ERVL LTR ERVL 2714 3340 -2424 292 333 39 39 chr12 11594586 11594742 -132687747 - L2 LINE L2 0 3313 3158 195 100 0 0 chr12 11595817 11595847 -132686642 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 252 0 0 0 chr12 11595846 11595874 -132686615 + (TA)n Simple_repeat Simple_repeat 2 29 0 427 220 158 46 chr12 11597329 11597588 -132684901 - L1MEd LINE L1 -4910 1209 922 1819 157 3 7 chr12 11598596 11598890 -132683599 - AluSq SINE Alu -19 294 2 728 334 30 34 chr12 11599140 11599641 -132682848 + ERVL LTR ERVL 2803 3301 -2353 21 0 0 0 chr12 11600953 11600974 -132681515 + GC_rich Low_complexity Low_complexity 1 21 0 1102 129 0 0 chr12 11601159 11601330 -132681159 - L1 LINE L1 -1307 4839 4669 266 305 32 19 chr12 11601391 11601545 -132680944 + L1MEc LINE L1 1419 1574 -4822 589 302 63 7 chr12 11601853 11602169 -132680320 + L1ME3 LINE L1 5618 5948 -216 2347 84 0 3 chr12 11602224 11602521 -132679968 + AluSx SINE Alu 1 296 -16 397 219 37 106 chr12 11603130 11603425 -132679064 - L1ME3 LINE L1 -230 5940 5677 22 0 0 0 chr12 11603696 11603718 -132678771 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 11603843 11603864 -132678625 + AT_rich Low_complexity Low_complexity 1 21 0 627 151 0 2 chr12 11605364 11605479 -132677010 - LTR12 LTR ERV1 0 714 175 244 214 34 22 chr12 11605482 11605571 -132676918 - LTR30 LTR ERV1 -80 642 553 888 200 33 83 chr12 11605572 11605872 -132676617 - LTR12 LTR ERV1 -429 285 1 27 0 0 0 chr12 11606709 11606736 -132675753 + AT_rich Low_complexity Low_complexity 1 27 0 1774 102 0 4 chr12 11607133 11607369 -132675120 + AluSc SINE Alu 43 277 -32 351 0 0 0 chr12 11607371 11607410 -132675079 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 605 301 95 0 chr12 11608076 11608382 -132674107 - L1ME3A LINE L1 -208 5962 5628 1134 208 114 0 chr12 11608637 11608882 -132673607 + AluJo SINE Alu 1 273 -39 27 73 0 0 chr12 11608898 11608953 -132673536 + AT_rich Low_complexity Low_complexity 1 55 0 396 270 162 27 chr12 11609002 11609447 -132673042 - L1MEd LINE L1 -4842 1468 934 2190 65 7 0 chr12 11609883 11610185 -132672304 - AluY SINE Alu 0 307 4 22 0 0 0 chr12 11611527 11611549 -132670940 + AT_rich Low_complexity Low_complexity 1 22 0 1595 199 0 7 chr12 11611753 11612054 -132670435 + AluJb SINE Alu 1 299 -13 496 259 112 89 chr12 11612467 11612919 -132669570 - L1ME3 LINE L1 -230 5940 5480 189 178 0 0 chr12 11613797 11613842 -132668647 + (CATA)n Simple_repeat Simple_repeat 1 45 0 310 223 62 69 chr12 11614255 11614385 -132668104 + MIR SINE MIR 8 136 -126 2520 62 15 0 chr12 11614389 11614714 -132667775 + L1PA7 LINE L1 5821 6150 -4 14260 181 20 27 chr12 11614714 11616636 -132665853 + L1MA2 LINE L1 3173 5108 -2615 2464 74 0 0 chr12 11616636 11616947 -132665542 - AluY SINE Alu 0 311 1 14260 181 20 27 chr12 11616947 11619595 -132662894 + L1MA2 LINE L1 5108 7723 0 27 49 0 0 chr12 11619903 11619944 -132662545 + AT_rich Low_complexity Low_complexity 1 41 0 1516 262 64 9 chr12 11620310 11620745 -132661744 - L1MEd LINE L1 -5577 542 84 248 280 151 21 chr12 11621006 11621192 -132661297 + MLT1G LTR MaLR 10 219 -371 21 0 0 0 chr12 11621810 11621831 -132660658 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr12 11622178 11622220 -132660269 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 3210 126 14 8 chr12 11624103 11624611 -132657878 - MER9 LTR ERVK 0 511 1 26 0 0 0 chr12 11624649 11624675 -132657814 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr12 11625448 11625470 -132657019 + AT_rich Low_complexity Low_complexity 1 22 0 573 305 76 6 chr12 11625721 11626036 -132656453 - L1ME3 LINE L1 -206 5939 5603 315 334 104 28 chr12 11626289 11626606 -132655883 - L1ME3 LINE L1 -4762 1548 1208 275 215 136 63 chr12 11626614 11626805 -132655684 - L1ME3 LINE L1 -4971 1148 944 183 80 0 0 chr12 11627707 11627732 -132654757 + (ATG)n Simple_repeat Simple_repeat 1 25 0 1803 161 4 0 chr12 11627861 11628141 -132654348 - AluSq SINE Alu -29 284 4 1987 64 0 181 chr12 11628818 11629194 -132653295 - AluY SINE Alu -3 308 1 22 56 0 0 chr12 11629262 11629298 -132653191 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr12 11629389 11629412 -132653077 + AT_rich Low_complexity Low_complexity 1 23 0 402 256 21 103 chr12 11629700 11629942 -132652547 - L1ME3 LINE L1 -232 5938 5717 4504 72 16 0 chr12 11629962 11630754 -132651735 + L1PA6 LINE L1 5064 5864 -290 26 30 0 0 chr12 11630883 11630916 -132651573 + AT_rich Low_complexity Low_complexity 1 33 0 212 147 0 0 chr12 11631879 11631913 -132650576 + (CA)n Simple_repeat Simple_repeat 2 35 0 301 293 48 54 chr12 11632278 11632425 -132650064 + MIR SINE MIR 5 150 -112 1671 172 3 3 chr12 11632425 11632716 -132649773 + AluSx SINE Alu 13 303 -9 1577 193 31 0 chr12 11632883 11633173 -132649316 - AluJo SINE Alu -13 299 1 1349 352 54 37 chr12 11633250 11633844 -132648645 + HERVL LTR ERVL 2141 2723 -3041 1472 189 48 0 chr12 11633844 11634114 -132648375 + AluJb SINE Alu 3 285 -27 1349 352 54 37 chr12 11634114 11634686 -132647803 + HERVL LTR ERVL 2723 3327 -2437 243 270 51 73 chr12 11635740 11635877 -132646612 - L2 LINE L2 0 3313 3180 22 80 0 0 chr12 11636873 11636923 -132645566 + AT_rich Low_complexity Low_complexity 1 50 0 205 163 47 0 chr12 11637043 11637086 -132645403 + (CATA)n Simple_repeat Simple_repeat 1 45 0 650 294 92 0 chr12 11640100 11640416 -132642073 - L1ME3A LINE L1 -208 5962 5618 948 225 131 0 chr12 11640665 11640909 -132641580 + AluJo SINE Alu 1 276 -36 374 337 18 12 chr12 11641018 11641181 -132641308 - HAL1 LINE L1 -954 1553 1390 424 222 111 56 chr12 11641273 11641471 -132641018 - L1MEd LINE L1 -4967 1152 944 21 36 0 0 chr12 11643101 11643129 -132639360 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 11643423 11643446 -132639043 + AT_rich Low_complexity Low_complexity 1 23 0 1562 194 0 3 chr12 11643468 11643756 -132638733 + AluJb SINE Alu 12 298 -14 425 192 21 175 chr12 11644185 11644419 -132638070 - L1ME1 LINE L1 -224 5938 5738 321 277 0 0 chr12 11644422 11644516 -132637973 + L1M4 LINE L1 4936 5029 -1117 1215 204 13 43 chr12 11644790 11645094 -132637395 - AluJb SINE Alu -7 295 1 481 346 178 15 chr12 11645247 11645579 -132636910 - L2 LINE L2 -1115 2199 1814 295 374 15 0 chr12 11645659 11645854 -132636635 + HERVL LTR ERVL 1723 1920 -3734 2005 202 67 27 chr12 11645895 11646419 -132636070 + MER50 LTR ERV1 3 547 -187 189 132 0 0 chr12 11647033 11647071 -132635418 + (T)n Simple_repeat Simple_repeat 1 38 0 1127 42 0 7 chr12 11647072 11647214 -132635275 - L1PA3 LINE L1 0 6155 6015 21 36 0 0 chr12 11647834 11647862 -132634627 + AT_rich Low_complexity Low_complexity 1 28 0 1541 198 0 3 chr12 11648200 11648488 -132634001 + AluJb SINE Alu 12 298 -14 425 192 21 175 chr12 11648918 11649152 -132633337 - L1ME1 LINE L1 -224 5938 5738 333 266 0 0 chr12 11649155 11649249 -132633240 + L1M4 LINE L1 4936 5029 -1117 1163 243 10 7 chr12 11649521 11649817 -132632672 - AluJb SINE Alu -1 301 5 470 354 183 6 chr12 11649974 11650302 -132632187 - L2 LINE L2 -1115 2199 1814 310 332 35 16 chr12 11650374 11650590 -132631899 + HERVL LTR ERVL 1715 1926 -3070 2715 178 66 88 chr12 11650618 11651359 -132631130 + MER50 LTR ERV1 3 727 -7 490 172 0 43 chr12 11651477 11651570 -132630919 - AluJo SINE Alu -21 291 203 1281 204 48 130 chr12 11651570 11651990 -132630499 + LTR36 LTR ERV1 1 351 -260 1884 191 89 17 chr12 11651990 11652461 -132630028 + LTR22 LTR ERVK 1 505 -4 1281 204 48 130 chr12 11652461 11652686 -132629803 + LTR36 LTR ERV1 351 593 -18 805 224 0 86 chr12 11652697 11652929 -132629560 - AluJo SINE Alu -100 212 1 750 320 95 24 chr12 11652934 11653431 -132629058 + HERVL LTR ERVL 2017 2548 -2937 375 330 17 52 chr12 11653666 11653762 -132628727 + HERVL LTR ERVL 2803 2901 -2753 1584 169 18 21 chr12 11653762 11654086 -132628403 - AluSx SINE Alu 0 324 2 375 330 17 52 chr12 11654086 11654221 -132628268 + HERVL LTR ERVL 2901 3027 -2627 448 288 0 8 chr12 11654289 11654427 -132628062 + HERVL LTR ERVL 3047 3168 -2486 406 256 40 16 chr12 11654884 11655009 -132627480 - LTR36 LTR ERV1 -44 567 440 818 170 158 35 chr12 11655106 11655365 -132627124 - LTR36 LTR ERV1 -318 293 3 536 291 42 18 chr12 11656073 11656238 -132626251 - LTR38-int LTR ERV1 -1494 292 124 182 118 29 0 chr12 11656687 11656721 -132625768 + (TA)n Simple_repeat Simple_repeat 2 36 0 223 260 39 0 chr12 11657781 11657858 -132624631 + (TA)n Simple_repeat Simple_repeat 1 80 0 22 0 0 0 chr12 11659784 11659806 -132622683 + AT_rich Low_complexity Low_complexity 1 22 0 246 288 25 12 chr12 11660661 11660741 -132621748 - L1ME3 LINE L1 -81 6064 5984 553 248 133 28 chr12 11660850 11661173 -132621316 - L1ME3 LINE L1 -214 5939 5583 384 255 147 22 chr12 11661575 11661953 -132620536 - L1ME3 LINE L1 -4910 1209 924 183 80 0 0 chr12 11662824 11662849 -132619640 + (ATG)n Simple_repeat Simple_repeat 1 25 0 1895 149 7 0 chr12 11662960 11663255 -132619234 - AluSq SINE Alu -15 298 2 25 31 0 0 chr12 11664003 11664035 -132618454 + AT_rich Low_complexity Low_complexity 1 32 0 22 80 0 0 chr12 11664445 11664495 -132617994 + AT_rich Low_complexity Low_complexity 1 50 0 1031 212 40 26 chr12 11664685 11664981 -132617508 + LTR10B LTR ERV1 226 547 0 478 300 90 10 chr12 11664981 11665280 -132617209 - L1ME LINE L1 -347 5823 5483 24 77 0 0 chr12 11665417 11665469 -132617020 + AT_rich Low_complexity Low_complexity 1 52 0 218 317 55 41 chr12 11666818 11666963 -132615526 + MIR SINE MIR 5 151 -111 1839 163 3 0 chr12 11666963 11667258 -132615231 + AluSx SINE Alu 1 296 -16 1543 184 38 3 chr12 11667434 11667727 -132614762 - AluJo SINE Alu -9 303 1 1612 332 46 36 chr12 11667804 11668394 -132614095 + HERVL LTR ERVL 2102 2708 -2946 1479 209 3 0 chr12 11668394 11668677 -132613812 + AluJb SINE Alu 3 286 -26 1612 332 46 36 chr12 11668677 11669131 -132613358 + HERVL LTR ERVL 2708 3156 -2498 1736 96 54 8 chr12 11669436 11669697 -132612792 - AluY SINE Alu -5 306 34 369 308 39 39 chr12 11669994 11670150 -132612339 - L2 LINE L2 0 3313 3158 207 100 0 0 chr12 11671238 11671268 -132611221 + (CA)n Simple_repeat Simple_repeat 1 30 0 821 173 74 189 chr12 11672383 11673012 -132609477 - LTR12 LTR ERV1 -228 1683 69 225 278 0 0 chr12 11673019 11673073 -132609416 - LTR30 LTR ERV1 -668 54 1 31 0 0 0 chr12 11673909 11673940 -132608549 + AT_rich Low_complexity Low_complexity 1 31 0 1803 111 0 4 chr12 11674335 11674587 -132607902 + AluSc SINE Alu 42 292 -17 27 29 0 0 chr12 11675840 11675874 -132606615 + AT_rich Low_complexity Low_complexity 1 34 0 1615 183 3 7 chr12 11676084 11676384 -132606105 + AluJo SINE Alu 1 299 -13 9007 50 2 1 chr12 11676653 11678583 -132603906 + L1PA5 LINE L1 4222 6154 0 21 0 0 0 chr12 11678583 11678604 -132603885 + AT_rich Low_complexity Low_complexity 1 21 0 292 261 45 0 chr12 11678973 11679061 -132603428 - Charlie7 DNA MER1_type -351 2261 2170 216 97 0 0 chr12 11679063 11679094 -132603395 + (A)n Simple_repeat Simple_repeat 1 31 0 280 254 39 39 chr12 11679393 11679413 -132603076 - L1M4 LINE L1 -328 5846 5827 479 272 178 31 chr12 11679413 11679700 -132602789 - L1ME3A LINE L1 -343 5827 5499 21 82 0 0 chr12 11679717 11679766 -132602723 + AT_rich Low_complexity Low_complexity 1 49 0 26 50 0 0 chr12 11679871 11679911 -132602578 + AT_rich Low_complexity Low_complexity 1 40 0 21 57 0 0 chr12 11681189 11681224 -132601265 + AT_rich Low_complexity Low_complexity 1 35 0 324 337 63 17 chr12 11681299 11681474 -132601015 + MIR SINE MIR 1 183 -79 1299 207 41 4 chr12 11681624 11681895 -132600594 - AluJo SINE Alu -31 281 1 978 243 29 20 chr12 11682076 11682418 -132600071 + L1M4 LINE L1 4576 4920 -1226 2614 126 23 54 chr12 11682427 11682943 -132599546 + L1MA2 LINE L1 2664 3163 -4402 6223 121 13 60 chr12 11682970 11689257 -132593232 + L1PA7 LINE L1 12 6151 -3 14537 176 13 19 chr12 11689257 11691008 -132591481 + L1MA2 LINE L1 3170 4929 -2794 233 29 0 29 chr12 11691008 11691043 -132591446 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 14537 176 13 19 chr12 11691043 11693308 -132589181 + L1MA2 LINE L1 4929 7174 -549 2276 80 0 7 chr12 11693308 11693609 -132588880 + AluSc SINE Alu 1 299 -10 14537 176 13 19 chr12 11693609 11694157 -132588332 + L1MA2 LINE L1 7174 7723 0 1541 254 51 18 chr12 11694882 11695334 -132587155 - L1ME LINE L1 -5598 472 6 219 271 0 0 chr12 11696648 11696696 -132585793 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 240 288 25 12 chr12 11697442 11697522 -132584967 - L1ME3 LINE L1 -81 6081 6001 781 277 81 6 chr12 11697629 11697961 -132584528 - L1ME3 LINE L1 -214 5956 5600 274 243 134 50 chr12 11698192 11698431 -132584058 - L1MEd LINE L1 -4944 1175 917 2088 126 0 0 chr12 11699430 11699723 -132582766 - AluSq SINE Alu -19 294 2 26 30 0 0 chr12 11700467 11700500 -132581989 + AT_rich Low_complexity Low_complexity 1 33 0 473 233 22 16 chr12 11701027 11701184 -132581305 - L1ME3A LINE L1 -338 5832 5678 198 118 0 0 chr12 11702192 11702226 -132580263 + (CA)n Simple_repeat Simple_repeat 2 35 0 2506 48 0 16 chr12 11702411 11702726 -132579763 + AluY SINE Alu 1 310 -1 312 233 116 79 chr12 11702924 11703062 -132579427 + MIR SINE MIR 5 153 -109 1952 136 3 3 chr12 11703062 11703357 -132579132 + AluSx SINE Alu 4 298 -14 312 233 116 79 chr12 11703357 11703407 -132579082 + MIR SINE MIR 153 200 -62 1603 184 31 3 chr12 11703523 11703811 -132578678 - AluJo SINE Alu -16 296 1 1376 334 56 46 chr12 11703908 11704467 -132578022 + HERVL LTR ERVL 2132 2709 -2945 1574 194 0 0 chr12 11704467 11704751 -132577738 + AluJb SINE Alu 3 286 -26 1376 334 56 46 chr12 11704751 11705261 -132577228 + HERVL LTR ERVL 2709 3212 -2442 315 308 45 38 chr12 11706483 11706616 -132575873 - L2 LINE L2 0 3313 3180 207 100 0 0 chr12 11707720 11707750 -132574739 + (CA)n Simple_repeat Simple_repeat 1 30 0 32 0 0 0 chr12 11709697 11709729 -132572760 + AT_rich Low_complexity Low_complexity 1 32 0 604 293 102 3 chr12 11710719 11711033 -132571456 - L1ME3A LINE L1 -208 5962 5618 637 218 78 0 chr12 11711281 11711423 -132571066 + AluJo SINE Alu 1 153 -159 1718 180 3 3 chr12 11713293 11713587 -132568902 + AluJb SINE Alu 1 294 -18 310 194 32 32 chr12 11714123 11714151 -132568338 - L1M4 LINE L1 -324 5854 5827 461 289 164 21 chr12 11714151 11714438 -132568051 - L1ME3A LINE L1 -344 6621 6294 27 49 0 0 chr12 11714597 11714638 -132567851 + AT_rich Low_complexity Low_complexity 1 41 0 207 167 0 0 chr12 11715576 11715612 -132566877 + (CA)n Simple_repeat Simple_repeat 2 37 0 385 316 53 38 chr12 11716016 11716225 -132566264 + MIR SINE MIR 1 212 -50 1588 185 3 18 chr12 11716343 11716629 -132565860 - AluJo SINE Alu -30 282 1 822 283 18 9 chr12 11716819 11717158 -132565331 + L1M4 LINE L1 4576 4917 -1229 5380 138 71 10 chr12 11717170 11718364 -132564125 + L1M1 LINE L1 2664 3920 -3645 3451 225 103 13 chr12 11718406 11719627 -132562862 - L1PBa LINE L1 -5381 1482 8 1999 160 0 10 chr12 11719695 11720008 -132562481 - AluSx SINE Alu 0 312 3 444 327 81 35 chr12 11721119 11721720 -132560769 - L1ME3A LINE L1 -1014 5927 5149 1688 168 11 3 chr12 11721720 11722005 -132560484 - AluJb SINE Alu -25 287 1 444 327 81 35 chr12 11722005 11722308 -132560181 - L1ME3A LINE L1 -1792 5149 4861 13055 28 2 0 chr12 11722308 11723872 -132558617 - L1PA3 LINE L1 -1495 4651 3085 7586 33 0 0 chr12 11723872 11725352 -132557137 + L1PA3 LINE L1 4676 6155 0 303 340 75 0 chr12 11726262 11726462 -132556027 - L1ME3A LINE L1 -2157 4784 4570 1531 15 0 46 chr12 11726597 11726793 -132555696 - L1PA4 LINE L1 -1 6154 5968 872 318 65 42 chr12 11727476 11728438 -132554051 + ERVL LTR ERVL 70 1128 -4636 23 33 0 0 chr12 11728537 11728567 -132553922 + AT_rich Low_complexity Low_complexity 1 30 0 2196 189 169 38 chr12 11728795 11729488 -132553001 - LTR48 LTR ERV1 -3 784 1 701 286 58 7 chr12 11730093 11730387 -132552102 - L1ME3A LINE L1 -224 5946 5638 358 290 128 40 chr12 11730705 11731153 -132551336 - L1MEd LINE L1 -4796 2147 1679 2176 73 0 4 chr12 11731374 11731648 -132550841 - AluY SINE Alu -14 297 25 201 147 0 0 chr12 11732335 11732369 -132550120 + (ATGGTG)n Simple_repeat Simple_repeat 5 38 0 1984 117 0 14 chr12 11734980 11735291 -132547198 - AluSg SINE Alu 0 307 1 831 273 114 17 chr12 11735490 11735842 -132546647 + MLT1J1 LTR MaLR 40 425 -21 592 210 49 0 chr12 11737129 11737272 -132545217 + MLT1J2 LTR MaLR 1 150 -300 446 236 50 29 chr12 11737435 11737575 -132544914 + L1MC4a LINE L1 5787 5929 -1879 466 92 0 15 chr12 11737616 11737681 -132544808 + U6 snRNA snRNA 1 64 -43 311 291 108 27 chr12 11737760 11737908 -132544581 + L1MC4a LINE L1 6075 6234 -1574 280 280 103 0 chr12 11738191 11738298 -132544191 - LTR67 LTR ERVL -34 523 406 1891 185 29 43 chr12 11738587 11739042 -132543447 + MLT2B2 LTR ERVL 1 414 0 315 128 135 74 chr12 11739277 11739292 -132543197 - L1MA10 LINE L1 0 6334 6320 1031 194 148 27 chr12 11739292 11739808 -132542681 - L1ME1 LINE L1 -5 6161 5467 537 307 45 14 chr12 11739827 11740114 -132542375 - L1MEd LINE L1 -5240 1701 1406 601 281 107 20 chr12 11740185 11740575 -132541914 - L1MEd LINE L1 -5143 1280 818 1760 222 90 13 chr12 11741222 11741691 -132540798 - MLT1D LTR MaLR 0 505 1 1289 274 73 12 chr12 11741694 11741973 -132540516 - L1MEd LINE L1 -5958 465 150 2153 77 0 7 chr12 11741973 11742247 -132540242 - AluY SINE Alu -13 298 27 1289 274 73 12 chr12 11742247 11742390 -132540099 - L1MEd LINE L1 -6273 150 17 902 81 17 23 chr12 11742718 11742890 -132539599 + (GAAA)n Simple_repeat Simple_repeat 2 172 0 2527 33 0 7 chr12 11744690 11744992 -132537497 + AluY SINE Alu 1 300 -11 228 298 138 0 chr12 11745390 11745484 -132537005 + MIR SINE MIR 37 143 -119 620 233 75 63 chr12 11747038 11747356 -132535133 + HAL1 LINE L1 1912 2233 -274 192 356 11 23 chr12 11747750 11747837 -132534652 + L2 LINE L2 2998 3083 -189 299 181 0 35 chr12 11748296 11748412 -132534077 + (TA)n Simple_repeat Simple_repeat 1 112 0 195 42 0 0 chr12 11748462 11748486 -132534003 + (TA)n Simple_repeat Simple_repeat 2 25 0 408 214 92 23 chr12 11748664 11748795 -132533694 + L2 LINE L2 3174 3313 0 435 284 77 0 chr12 11749190 11749345 -132533144 - MIR SINE MIR -10 252 86 2105 176 26 3 chr12 11750132 11750484 -132532005 + MLT1A1 LTR MaLR 1 360 -5 454 118 0 0 chr12 11750992 11751060 -132531429 + AluJ/FRAM SINE Alu 228 295 -17 2200 104 0 7 chr12 11752439 11752727 -132529762 + AluSp SINE Alu 3 288 -25 419 120 37 37 chr12 11752732 11752840 -132529649 + GA-rich Low_complexity Low_complexity 3 110 0 206 219 0 0 chr12 11754134 11754175 -132528314 + GA-rich Low_complexity Low_complexity 2 42 0 515 179 0 54 chr12 11756016 11756128 -132526361 - MER5B DNA MER1_type 0 178 73 271 273 10 50 chr12 11756342 11756441 -132526048 + L2 LINE L2 3215 3309 -4 862 65 36 50 chr12 11757137 11757276 -132525213 + L1PA13 LINE L1 6027 6163 0 2303 97 3 10 chr12 11757904 11758212 -132524277 + AluSx SINE Alu 1 306 -6 2280 117 7 0 chr12 11759685 11759993 -132522496 + AluSx SINE Alu 1 310 -2 24 53 0 0 chr12 11760161 11760199 -132522290 + AT_rich Low_complexity Low_complexity 1 38 0 295 216 10 10 chr12 11762771 11762868 -132519621 + GA-rich Low_complexity Low_complexity 4 100 0 481 306 165 65 chr12 11762912 11763573 -132518916 - L2 LINE L2 -695 2619 1893 460 294 110 16 chr12 11763622 11763877 -132518612 + L1M4 LINE L1 3834 4112 -2034 694 149 0 0 chr12 11763936 11764043 -132518446 + AluJb SINE Alu 1 107 -205 307 298 71 94 chr12 11764728 11764983 -132517506 - L3 LINE CR1 -1024 553 305 1577 199 94 0 chr12 11765137 11765499 -132516990 - MSTD LTR MaLR 0 396 1 2456 218 47 10 chr12 11765499 11766014 -132516475 - MSTD-int LTR MaLR 0 1735 1202 2662 239 34 32 chr12 11766019 11766747 -132515742 - MSTD-int LTR MaLR -907 828 99 1842 189 45 8 chr12 11766761 11767143 -132515346 - MSTD LTR MaLR 0 396 1 5422 109 6 1 chr12 11767271 11768053 -132514436 + L1PA13 LINE L1 5354 6139 -24 626 137 20 0 chr12 11768053 11768155 -132514334 + MLT2B1 LTR ERVL 59 162 -358 261 333 21 0 chr12 11768907 11769003 -132513486 - MIR SINE MIR -15 247 150 1524 178 30 7 chr12 11769352 11769621 -132512868 - AluJo SINE Alu -26 286 12 21 57 0 0 chr12 11770331 11770366 -132512123 + AT_rich Low_complexity Low_complexity 1 35 0 327 348 30 6 chr12 11770494 11770658 -132511831 - HAL1 LINE L1 -815 1692 1525 1946 125 38 0 chr12 11771674 11771961 -132510528 - AluSx SINE Alu -14 298 1 351 344 78 13 chr12 11772812 11772966 -132509523 - MER97c DNA MER1_type? -913 177 14 622 253 41 0 chr12 11773146 11773292 -132509197 - MIR SINE MIR 0 262 111 802 217 7 0 chr12 11773488 11773640 -132508849 + AluJo SINE Alu 3 155 -157 1624 128 157 20 chr12 11773640 11773945 -132508544 - MSTA LTR MaLR 0 428 82 957 245 82 35 chr12 11773960 11774327 -132508162 + L2 LINE L2 2582 2965 -349 2057 147 0 0 chr12 11774710 11775017 -132507472 + AluSx SINE Alu 1 307 -5 368 325 55 48 chr12 11775312 11775583 -132506906 - L2 LINE L2 -9 3304 3032 446 151 55 97 chr12 11775587 11775722 -132506767 - MLT1H LTR MaLR 0 549 445 348 157 0 14 chr12 11775977 11776047 -132506442 - MLT1D LTR MaLR 0 505 437 783 139 64 30 chr12 11776048 11776407 -132506082 + L1MB3 LINE L1 4504 5495 -685 428 181 0 11 chr12 11776412 11776506 -132505983 + GA-rich Low_complexity Low_complexity 3 95 0 2468 167 36 9 chr12 11776520 11777039 -132505450 + LTR27 LTR ERV1 2 501 0 639 39 0 0 chr12 11777039 11777117 -132505372 + (GGAA)n Simple_repeat Simple_repeat 2 79 0 2734 162 40 12 chr12 11777117 11777611 -132504878 + L1MB3 LINE L1 5496 6003 -180 346 288 23 45 chr12 11777767 11777899 -132504590 + MER5A DNA MER1_type 43 171 -18 2917 236 89 47 chr12 11778245 11778428 -132504061 + L1MC4a LINE L1 5365 5539 -2269 2016 154 75 44 chr12 11778428 11778909 -132503580 - LTR54B LTR ERV1 -2 496 1 2917 236 89 47 chr12 11778909 11779332 -132503157 + L1MC4a LINE L1 5539 5943 -1865 1941 172 7 0 chr12 11779332 11779640 -132502849 + AluSg SINE Alu 1 310 0 2917 236 89 47 chr12 11779640 11780078 -132502411 + L1MC4a LINE L1 5943 6454 -1354 2014 176 176 5 chr12 11780116 11780543 -132501946 - MER21B LTR ERV1 -363 500 1 428 181 14 0 chr12 11780565 11780637 -132501852 - MER2 DNA MER2_type -272 73 1 4309 217 80 55 chr12 11780637 11780735 -132501754 + L1MC4 LINE L1 6475 6569 -1473 1780 140 117 26 chr12 11780735 11781077 -132501412 - THE1C LTR MaLR -2 373 1 4309 217 80 55 chr12 11781077 11781943 -132500546 + L1MC4 LINE L1 6569 7412 -630 231 36 0 0 chr12 11781943 11781971 -132500518 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 4309 217 80 55 chr12 11781971 11782397 -132500092 + L1MC4 LINE L1 7412 7910 -132 210 71 0 0 chr12 11782397 11782425 -132500064 + (TG)n Simple_repeat Simple_repeat 1 28 0 4309 217 80 55 chr12 11782425 11782562 -132499927 + L1MC4 LINE L1 7910 8042 0 678 223 22 112 chr12 11783279 11783405 -132499084 - MIR SINE MIR 0 262 171 2135 110 0 17 chr12 11783405 11783706 -132498783 + AluSq SINE Alu 1 296 -17 678 223 22 112 chr12 11783706 11783848 -132498641 - MIR SINE MIR -91 171 18 5274 149 18 2 chr12 11785257 11786110 -132496379 + L1MC1 LINE L1 5459 6324 -9 3169 183 8 13 chr12 11786129 11786746 -132495743 + L1MC3 LINE L1 5320 5933 -1852 1268 107 0 6 chr12 11786749 11786927 -132495562 - L1MC/D LINE L1 -699 5634 5458 1058 177 57 34 chr12 11787027 11787292 -132495197 + L1MC3 LINE L1 5942 6212 -1573 191 61 30 0 chr12 11787304 11787337 -132495152 + (TTTTTA)n Simple_repeat Simple_repeat 1 34 0 7690 21 3 0 chr12 11787339 11788861 -132493628 - L1PA3 LINE L1 -4 6151 4628 2055 28 0 0 chr12 11788861 11789111 -132493378 + L1P LINE L1 4311 4560 -1586 * 2895 181 79 28 chr12 11789098 11789734 -132492755 + L1MC3 LINE L1 6194 6861 -924 2921 199 88 22 chr12 11789748 11790442 -132492047 + L1MC3 LINE L1 7046 7785 0 1274 161 4 12 chr12 11791760 11792002 -132490487 + L1MA9 LINE L1 6071 6310 -2 25 83 0 0 chr12 11792002 11792062 -132490427 + AT_rich Low_complexity Low_complexity 1 60 0 1478 150 73 7 chr12 11792281 11792567 -132489922 - LTR19A LTR ERV1 -181 305 1 13979 162 41 44 chr12 11792951 11798057 -132484432 + L1PB1 LINE L1 1423 6506 -361 234 217 0 48 chr12 11798074 11798157 -132484332 - L1MCa LINE L1 -4357 2069 1991 2516 110 0 5 chr12 11798170 11798542 -132483947 + L1PB1 LINE L1 6497 6866 -1 205 269 97 0 chr12 11800731 11800824 -132481665 - L3 LINE CR1 -820 757 656 719 211 68 73 chr12 11801260 11801554 -132480935 + L1MC4 LINE L1 7755 8037 -5 521 280 8 0 chr12 11801554 11801679 -132480810 + MER5B DNA MER1_type 51 176 -2 288 259 120 57 chr12 11801989 11802147 -132480342 - MLT1K LTR MaLR -9 579 412 1687 245 52 40 chr12 11803006 11803562 -132478927 - MLT1F1 LTR MaLR -4 563 1 3013 121 32 2 chr12 11805153 11805623 -132476866 - L1MA5A LINE L1 -181 6116 5633 562 192 13 46 chr12 11806213 11806364 -132476125 + L1MA10 LINE L1 6189 6334 0 279 229 34 51 chr12 11807204 11807322 -132475167 + L1MC5 LINE L1 7326 7441 -520 475 268 0 49 chr12 11807410 11807574 -132474915 - MER69A DNA AcHobo -1 176 21 2072 171 84 0 chr12 11808253 11808646 -132473843 - MSTB LTR MaLR 0 426 1 388 296 80 0 chr12 11808701 11808826 -132473663 + HAL1 LINE L1 10 144 -2363 294 385 17 6 chr12 11809039 11809218 -132473271 + MIR SINE MIR 78 258 -4 377 149 0 15 chr12 11809404 11809471 -132473018 - AluSx SINE Alu -2 300 235 1409 88 0 6 chr12 11809471 11809652 -132472837 - AluSx SINE Alu -132 180 1 1910 158 0 0 chr12 11809968 11810266 -132472223 + AluJb SINE Alu 1 298 -14 229 266 73 64 chr12 11810497 11810606 -132471883 + MIR SINE MIR 115 224 -38 611 348 80 6 chr12 11811076 11811438 -132471051 - L2 LINE L2 -526 2788 2400 556 224 72 0 chr12 11811447 11811599 -132470890 + MLT1B LTR MaLR 1 163 -227 201 121 0 0 chr12 11811641 11811674 -132470815 + (TTC)n Simple_repeat Simple_repeat 3 35 0 296 226 19 9 chr12 11811715 11811727 -132470762 - L1MA4A LINE L1 -8 6295 6284 3246 219 18 28 chr12 11811727 11811835 -132470654 - L1PB4 LINE L1 -3 6153 6046 3234 190 25 31 chr12 11811835 11812214 -132470275 - L1MA4A LINE L1 -262 6041 5662 2052 25 0 4 chr12 11812214 11812450 -132470039 - AluYa5 SINE Alu -1 310 76 3234 190 25 31 chr12 11812450 11813017 -132469472 - L1MA4A LINE L1 -641 5662 5099 349 275 0 0 chr12 11813324 11813415 -132469074 + Zaphod DNA AcHobo 3940 4030 -1 251 293 41 0 chr12 11813427 11813550 -132468939 - HAL1 LINE L1 -1160 1347 1220 285 264 118 27 chr12 11813575 11813904 -132468585 - HAL1 LINE L1 -1339 1168 810 623 349 82 11 chr12 11815107 11815462 -132467027 - L2 LINE L2 -535 2779 2400 1350 217 18 53 chr12 11815471 11815867 -132466622 + MLT1B LTR MaLR 1 382 -8 5129 197 16 4 chr12 11816672 11817777 -132464712 + HSMAR2 DNA Mariner 5 1123 -179 1414 225 7 10 chr12 11818497 11818799 -132463690 - AluJo SINE Alu -1 301 1 271 300 77 65 chr12 11818918 11819165 -132463324 + HERVL40 LTR ERVL 1368 1617 -3913 1621 259 43 49 chr12 11819285 11820214 -132462275 + L1MDb LINE L1 938 1858 -4548 2388 77 0 0 chr12 11820214 11820512 -132461977 + AluY SINE Alu 1 298 -13 1621 259 43 49 chr12 11820512 11820588 -132461901 + L1MDb LINE L1 1858 1933 -4473 1046 205 101 11 chr12 11820831 11821207 -132461282 + L1MDb LINE L1 2011 2420 -3986 720 221 248 45 chr12 11821410 11821618 -132460871 + MLT1D LTR MaLR 1 166 -339 299 25 25 0 chr12 11821618 11821658 -132460831 + (ATGTG)n Simple_repeat Simple_repeat 3 43 0 720 221 248 45 chr12 11821658 11821869 -132460620 + MLT1D LTR MaLR 166 505 0 341 200 15 0 chr12 11823807 11823872 -132458617 - MER69A DNA AcHobo -97 80 15 369 287 49 0 chr12 11824530 11824652 -132457837 + HAL1 LINE L1 23 150 -2357 367 155 113 10 chr12 11825274 11825371 -132457118 - L1MA7 LINE L1 -45 6246 6140 4806 80 1 53 chr12 11825373 11826089 -132456400 - L1PA8 LINE L1 -2 6170 5492 327 188 14 0 chr12 11826089 11826158 -132456331 - L1P LINE L1 -1570 4576 4507 1244 87 22 0 chr12 11826181 11826365 -132456124 + L1PA13 LINE L1 5971 6158 -5 484 191 65 10 chr12 11826384 11826583 -132455906 + L1 LINE L1 4233 4442 -1704 204 354 62 8 chr12 11826584 11826714 -132455775 + MIR SINE MIR 72 208 -54 890 247 75 11 chr12 11826903 11827170 -132455319 - MLT1G1 LTR MaLR -311 284 1 1541 216 10 8 chr12 11827755 11828154 -132454335 + L1M2 LINE L1 2097 2496 -4353 750 235 87 69 chr12 11828626 11829004 -132453485 - MLT1B LTR MaLR -5 385 1 474 320 90 20 chr12 11829051 11829351 -132453138 + L2 LINE L2 2444 2764 -550 375 250 190 43 chr12 11829855 11830039 -132452450 - MIR SINE MIR -49 213 3 27847 129 15 64 chr12 11830810 11836572 -132445917 + L1PA8 LINE L1 25 5491 -681 1795 155 31 7 chr12 11836572 11836863 -132445626 + AluSq SINE Alu 1 298 -15 1276 118 0 16 chr12 11836865 11837040 -132445449 + AluSc SINE Alu 126 299 -10 5187 82 0 0 chr12 11837040 11837733 -132444756 + L1PA8 LINE L1 5478 6170 -2 2622 236 27 7 chr12 11837743 11838451 -132444038 + L1PB4 LINE L1 5432 6153 -3 201 338 183 43 chr12 11838507 11838971 -132443518 - L2 LINE L2 -411 2903 2375 851 321 93 21 chr12 11838980 11839646 -132442843 - L2 LINE L2 -1242 2072 1359 310 298 32 0 chr12 11839740 11839834 -132442655 - MIR SINE MIR -93 169 73 1700 192 3 3 chr12 11840200 11840497 -132441992 + AluSx SINE Alu 1 297 -15 319 234 27 120 chr12 11841091 11841275 -132441214 + L1ME LINE L1 5711 5801 -320 319 325 32 45 chr12 11841739 11841893 -132440596 + MER5A DNA MER1_type 33 184 -5 180 370 34 63 chr12 11843942 11844293 -132438196 + L2 LINE L2 2519 2859 -455 298 216 0 27 chr12 11846782 11846856 -132435633 - MLT1B LTR MaLR -318 72 1 224 333 64 18 chr12 11846906 11847077 -132435412 + L2 LINE L2 2481 2659 -655 266 94 57 0 chr12 11847278 11847331 -132435158 + (TTATA)n Simple_repeat Simple_repeat 5 60 0 259 279 188 48 chr12 11847481 11847646 -132434843 - MIR SINE MIR -73 189 2 931 239 80 0 chr12 11848598 11848861 -132433628 + MLT1G1 LTR MaLR 1 284 -311 206 411 33 0 chr12 11849008 11849188 -132433301 - MIR SINE MIR -10 252 67 297 68 0 0 chr12 11849204 11849248 -132433241 + (GA)n Simple_repeat Simple_repeat 1 44 0 2563 45 0 0 chr12 11849384 11849694 -132432795 + L1PA5 LINE L1 5836 6145 -9 28 0 0 0 chr12 11849695 11849723 -132432766 + AT_rich Low_complexity Low_complexity 1 28 0 233 106 0 21 chr12 11849797 11849844 -132432645 + (GA)n Simple_repeat Simple_repeat 1 46 0 246 265 43 74 chr12 11850089 11850251 -132432238 - HAL1 LINE L1 -2328 179 23 293 246 0 0 chr12 11850905 11850966 -132431523 + MER69 DNA AcHobo 20 80 -97 225 213 138 0 chr12 11851519 11851613 -132430876 - L1MDa LINE L1 -4285 2255 2149 496 211 23 16 chr12 11851613 11851741 -132430748 - MLT1D LTR MaLR -56 449 321 1389 291 39 45 chr12 11851806 11852822 -132429667 - L1MDa LINE L1 -4411 2129 1120 1291 231 7 21 chr12 11853384 11853708 -132428781 + AluJo SINE Alu 3 322 0 296 316 38 19 chr12 11854256 11854414 -132428075 - HERVL40 LTR ERVL -5261 269 109 4754 193 23 28 chr12 11854416 11855540 -132426949 - HSMAR2 DNA Mariner -179 1123 5 240 289 31 10 chr12 11856249 11856346 -132426143 + L2 LINE L2 2307 2405 -909 791 265 6 74 chr12 11856349 11856700 -132425789 - MLT1B LTR MaLR -17 373 47 1098 231 10 70 chr12 11857125 11857349 -132425140 - AluJo SINE Alu -9 293 92 2477 65 7 10 chr12 11857349 11857657 -132424832 - AluY SINE Alu -4 307 1 1098 231 10 70 chr12 11857657 11857744 -132424745 - AluJo SINE Alu -210 92 1 1045 205 34 24 chr12 11858502 11858799 -132423690 - HSMAR2 DNA Mariner -2 1300 1001 1660 117 10 67 chr12 11858821 11859121 -132423368 - L1PB1 LINE L1 -3 6148 5866 942 163 17 0 chr12 11859121 11859293 -132423196 + HSMAR2 DNA Mariner 845 1019 -283 3771 190 26 32 chr12 11859301 11860208 -132422281 - HSMAR2 DNA Mariner -398 904 3 3088 74 0 0 chr12 11860979 11861383 -132421106 + L1PA6 LINE L1 5732 6135 -19 198 71 0 0 chr12 11861386 11861414 -132421075 + (TAAAA)n Simple_repeat Simple_repeat 4 31 0 12444 100 7 1 chr12 11861414 11863340 -132419149 + L1PA8 LINE L1 3051 4988 -1158 2483 40 15 0 chr12 11863344 11863669 -132418820 - L1P2 LINE L1 -1692 4454 4125 * 6617 55 3 13 chr12 11863668 11864992 -132417497 + L1P2 LINE L1 4474 5781 -373 41196 47 4 2 chr12 11864999 11871124 -132411365 + L1PA4 LINE L1 7 6145 -10 2462 94 10 0 chr12 11871129 11871634 -132410855 + L1PA8 LINE L1 4982 5491 -663 1799 144 35 3 chr12 11871634 11871918 -132410571 + AluSq SINE Alu 1 293 -20 1229 134 0 0 chr12 11871931 11872110 -132410379 + AluSg/x SINE Alu 127 305 -7 2173 77 3 0 chr12 11872110 11872410 -132410079 + L1PA8 LINE L1 5481 5781 -391 40916 33 21 1 chr12 11872419 11878448 -132404041 + L1PA2 LINE L1 2 6155 0 3047 72 0 0 chr12 11878469 11878871 -132403618 + L1PA8 LINE L1 5769 6170 -2 2546 241 17 17 chr12 11878877 11879602 -132402887 + L1PB4 LINE L1 5428 6152 -4 269 323 58 53 chr12 11879904 11880130 -132402359 - L2 LINE L2 -713 2601 2375 768 343 78 15 chr12 11880139 11880731 -132401758 - L2 LINE L2 -1242 2072 1444 278 306 91 0 chr12 11880873 11880994 -132401495 - MIR SINE MIR -58 204 73 1855 171 0 0 chr12 11881360 11881659 -132400830 + AluSx SINE Alu 1 299 -13 321 327 16 0 chr12 11882092 11882279 -132400210 + L1MC/D LINE L1 5668 5859 -316 21 36 0 0 chr12 11882292 11882320 -132400169 + AT_rich Low_complexity Low_complexity 1 28 0 302 327 39 46 chr12 11882787 11882940 -132399549 + MER5A DNA MER1_type 33 184 -5 196 339 78 43 chr12 11884745 11884975 -132397514 + L2 LINE L2 2587 2824 -490 289 216 0 27 chr12 11887352 11887426 -132395063 - MLT1B LTR MaLR -318 72 1 432 361 30 23 chr12 11887470 11887772 -132394717 + L2 LINE L2 2481 2784 -530 365 247 202 51 chr12 11888096 11888274 -132394215 - MIR SINE MIR -56 206 2 859 257 82 0 chr12 11889211 11889468 -132393021 + MLT1G1 LTR MaLR 7 284 -311 779 42 0 0 chr12 11889506 11889602 -132392887 + L1PA4 LINE L1 1 96 -6050 36729 42 1 1 chr12 11889602 11895137 -132387352 + L1PA4 LINE L1 623 6154 -1 240 276 60 85 chr12 11895690 11895889 -132386600 - HAL1 LINE L1 -2295 212 19 288 246 43 0 chr12 11896532 11896601 -132385888 + MER69 DNA AcHobo 9 80 -97 262 227 67 50 chr12 11897765 11897884 -132384605 - HERVL40 LTR ERVL -5301 229 109 4229 212 28 25 chr12 11897886 11898965 -132383524 - HSMAR2 DNA Mariner -179 1123 42 2058 113 37 7 chr12 11898966 11899266 -132383223 - AluY SINE Alu -2 309 1 192 229 48 48 chr12 11900040 11900123 -132382366 + L2 LINE L2 2308 2390 -924 697 246 13 104 chr12 11900123 11900502 -132381987 - MLT1B LTR MaLR 0 396 47 1200 236 0 45 chr12 11900928 11901237 -132381252 - AluJo SINE Alu -7 295 1 1386 189 17 0 chr12 11901993 11902290 -132380199 - HSMAR2 DNA Mariner 0 1302 1001 1831 121 11 4 chr12 11902306 11902587 -132379902 - L1PB1 LINE L1 -3 6148 5866 767 170 27 0 chr12 11902599 11902746 -132379743 + HSMAR2 DNA Mariner 869 1019 -283 3508 200 30 31 chr12 11902760 11903657 -132378832 - HSMAR2 DNA Mariner -404 898 3 222 244 37 12 chr12 11904396 11904478 -132378011 + L2 LINE L2 2307 2390 -924 573 261 23 11 chr12 11904483 11904659 -132377830 - MLT1B LTR MaLR -5 385 208 383 271 64 20 chr12 11904693 11904896 -132377593 - L1ME LINE L1 -5160 910 699 257 183 14 84 chr12 11905032 11905103 -132377386 - HERVL40 LTR ERVL -3404 2126 2061 222 220 0 34 chr12 11905614 11905673 -132376816 + L2 LINE L2 2334 2390 -924 650 250 8 108 chr12 11905690 11906042 -132376447 - MLT1B LTR MaLR -17 373 57 252 253 0 0 chr12 11906488 11906563 -132375926 + (TA)n Simple_repeat Simple_repeat 1 75 0 249 132 57 0 chr12 11906567 11906620 -132375869 - L1MCa LINE L1 -4365 2061 2006 246 239 0 0 chr12 11906620 11906691 -132375798 + (TA)n Simple_repeat Simple_repeat 2 72 0 381 93 0 0 chr12 11906696 11906750 -132375739 + (CA)n Simple_repeat Simple_repeat 1 54 0 1076 212 3 57 chr12 11906750 11907033 -132375456 - AluJo SINE Alu -36 276 9 1138 223 7 10 chr12 11907785 11908086 -132374403 - HSMAR2 DNA Mariner -2 1300 1001 1717 126 11 4 chr12 11908107 11908385 -132374104 - L1PB1 LINE L1 -1 6150 5871 878 144 0 0 chr12 11908419 11908558 -132373931 + HSMAR2 DNA Mariner 881 1019 -283 2375 179 26 43 chr12 11908566 11909148 -132373341 - HSMAR2 DNA Mariner -398 904 333 31515 80 6 9 chr12 11909176 11915311 -132367178 - L1PA5 LINE L1 -3 6151 11 1386 207 45 6 chr12 11915318 11915652 -132366837 - HSMAR2 DNA Mariner -953 349 3 187 297 33 11 chr12 11916372 11916463 -132366026 + L2 LINE L2 2298 2390 -924 1198 253 15 52 chr12 11916468 11916868 -132365621 - MLT1B LTR MaLR -5 385 1 394 322 82 46 chr12 11916912 11917241 -132365248 + L2 LINE L2 2444 2784 -530 294 247 199 60 chr12 11917709 11917875 -132364614 - MIR SINE MIR -72 190 2 1848 152 20 0 chr12 11918132 11918435 -132364054 - AluSg SINE Alu -1 309 1 4882 199 39 13 chr12 11918722 11919813 -132362676 + HSMAR2 DNA Mariner 5 1123 -179 1282 248 7 10 chr12 11920524 11920831 -132361658 - AluJo SINE Alu -6 306 1 293 296 86 66 chr12 11920952 11921195 -132361294 + HERVL40 LTR ERVL 1370 1617 -3913 292 208 52 39 chr12 11921194 11921271 -132361218 + HERVL40 LTR ERVL 2050 2127 -3403 * 1848 263 68 52 chr12 11921327 11922379 -132360110 + L1MDa LINE L1 1061 2129 -4411 412 268 31 8 chr12 11922444 11922571 -132359918 + MLT1D LTR MaLR 320 449 -56 1049 207 108 16 chr12 11922571 11922943 -132359546 + L1MDa LINE L1 2149 2554 -3986 699 200 119 117 chr12 11923146 11923650 -132358839 + MLT1D LTR MaLR 1 505 0 4097 202 18 8 chr12 11924132 11925004 -132357485 - HSMAR2 DNA Mariner -417 885 5 469 383 70 11 chr12 11925079 11925547 -132356942 - L2 LINE L2 -1453 1861 1366 405 287 84 40 chr12 11925588 11925790 -132356699 - MIR SINE MIR -34 228 18 1742 171 0 0 chr12 11926101 11926382 -132356107 + AluSx SINE Alu 1 281 -31 358 316 7 3 chr12 11926944 11927112 -132355377 + L1ME LINE L1 5668 5833 -316 219 357 32 45 chr12 11927638 11927792 -132354697 + MER5A DNA MER1_type 33 184 -5 293 230 0 27 chr12 11932681 11932755 -132349734 - MLT1B LTR MaLR -318 72 1 330 317 53 46 chr12 11932799 11933007 -132349482 + L2 LINE L2 2481 2693 -621 6637 35 1 0 chr12 11933007 11933804 -132348685 + L1PA4 LINE L1 5355 6152 -3 330 317 53 46 chr12 11933804 11933857 -132348632 + L2 LINE L2 2693 2744 -570 325 269 200 29 chr12 11934223 11934398 -132348091 - MIR SINE MIR -56 206 2 911 274 73 0 chr12 11935314 11935573 -132346916 + MLT1G1 LTR MaLR 7 284 -311 204 111 0 0 chr12 11935912 11935948 -132346541 + (GA)n Simple_repeat Simple_repeat 1 36 0 252 287 46 98 chr12 11936200 11936374 -132346115 - HAL1 LINE L1 -2324 183 19 351 217 43 0 chr12 11937015 11937084 -132345405 + MER69 DNA AcHobo 9 80 -97 402 269 25 8 chr12 11938252 11938371 -132344118 - HERVL40 LTR ERVL -5301 229 109 4547 202 37 26 chr12 11938373 11939443 -132343046 - HSMAR2 DNA Mariner -179 1123 42 2129 90 35 39 chr12 11939444 11939756 -132342733 - AluY SINE Alu 0 311 1 270 247 41 31 chr12 11940532 11940629 -132341860 + L2 LINE L2 2307 2404 -910 657 229 30 116 chr12 11940629 11940991 -132341498 - MLT1B LTR MaLR -13 377 47 1125 234 0 64 chr12 11941419 11941731 -132340758 - AluJo SINE Alu -10 292 1 1344 205 31 0 chr12 11942483 11942776 -132339713 - HSMAR2 DNA Mariner 0 1302 1001 1908 107 11 4 chr12 11942792 11943073 -132339416 - L1PB1 LINE L1 -3 6148 5866 831 175 54 0 chr12 11943073 11943239 -132339250 + HSMAR2 DNA Mariner 845 1019 -283 3601 201 32 41 chr12 11943247 11944157 -132338332 - HSMAR2 DNA Mariner -398 904 3 212 305 24 0 chr12 11944889 11944971 -132337518 + L2 LINE L2 2307 2390 -924 618 231 7 14 chr12 11944976 11945123 -132337366 - MLT1B LTR MaLR -5 385 240 301 262 77 52 chr12 11945202 11945492 -132336997 - L1MDb LINE L1 -5175 1221 934 323 250 13 0 chr12 11945527 11945603 -132336886 - HERVL40 LTR ERVL -3403 2127 2051 1258 245 3 17 chr12 11945966 11946293 -132336196 + AluJo SINE Alu 3 325 0 419 370 54 33 chr12 11946436 11946771 -132335718 - HERVL40 LTR ERVL -4123 1407 1066 411 333 19 6 chr12 11946853 11947012 -132335477 - HERVL40 LTR ERVL -5261 269 109 4772 203 27 29 chr12 11947014 11947115 -132335374 - HSMAR2 DNA Mariner -179 1123 1023 5339 111 5 68 chr12 11947115 11947997 -132334492 - LTR12 LTR ERV1 0 826 1 4772 203 27 29 chr12 11947997 11949016 -132333473 - HSMAR2 DNA Mariner -279 1023 5 752 236 14 106 chr12 11949849 11950209 -132332280 - MLT1B LTR MaLR -18 372 46 963 226 0 66 chr12 11950655 11950942 -132331547 - AluJo SINE Alu -33 279 12 1029 198 23 12 chr12 11951702 11951960 -132330529 - HSMAR2 DNA Mariner -2 1300 1040 1395 101 0 0 chr12 11951960 11952149 -132330340 + L1P LINE L1 31 219 -5927 263 280 51 0 chr12 11953526 11953622 -132328867 + L1ME LINE L1 5469 5571 -599 439 324 108 47 chr12 11954734 11955114 -132327375 + L1ME3 LINE L1 1271 1673 -4723 612 288 97 7 chr12 11955338 11955647 -132326842 + L1ME3 LINE L1 5689 6025 -206 25 0 0 0 chr12 11955899 11955924 -132326565 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr12 11956706 11956740 -132325749 + AT_rich Low_complexity Low_complexity 1 34 0 21 57 0 0 chr12 11956864 11956899 -132325590 + AT_rich Low_complexity Low_complexity 1 35 0 1085 163 10 39 chr12 11957663 11957866 -132324623 + AluJo SINE Alu 112 308 -4 223 308 105 47 chr12 11958004 11958176 -132324313 - MIR SINE MIR -79 183 2 21 57 0 0 chr12 11958368 11958403 -132324086 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr12 11959348 11959372 -132323117 + AT_rich Low_complexity Low_complexity 1 24 0 1721 148 10 36 chr12 11959717 11960021 -132322468 - AluSx SINE Alu -16 296 1 24 0 0 0 chr12 11960024 11960048 -132322441 + AT_rich Low_complexity Low_complexity 1 24 0 452 244 63 28 chr12 11960049 11960373 -132322116 + L1ME3A LINE L1 5470 5845 -333 34 96 0 0 chr12 11960582 11960686 -132321803 + AT_rich Low_complexity Low_complexity 1 104 0 29 28 0 0 chr12 11961069 11961105 -132321384 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr12 11962324 11962346 -132320143 + AT_rich Low_complexity Low_complexity 1 22 0 389 290 100 10 chr12 11963365 11963565 -132318924 + L1MEd LINE L1 924 1141 -4978 249 307 18 18 chr12 11963699 11963862 -132318627 + L1MEd LINE L1 1337 1499 -4811 583 304 25 28 chr12 11964176 11964466 -132318023 + L1ME3 LINE L1 5674 5962 -204 24 0 0 0 chr12 11964702 11964726 -132317763 + AT_rich Low_complexity Low_complexity 1 24 0 183 42 0 0 chr12 11965681 11965705 -132316784 + (TG)n Simple_repeat Simple_repeat 2 25 0 25 31 0 0 chr12 11967432 11967464 -132315025 + AT_rich Low_complexity Low_complexity 1 32 0 1892 137 3 42 chr12 11967887 11968200 -132314289 - AluSx SINE Alu -11 301 1 327 331 63 17 chr12 11968666 11968841 -132313648 + MIR SINE MIR 1 183 -79 1310 207 41 4 chr12 11968991 11969262 -132313227 - AluJo SINE Alu -31 281 1 931 246 29 20 chr12 11969443 11969785 -132312704 + L1M4 LINE L1 4576 4920 -1226 2633 122 23 54 chr12 11969794 11970310 -132312179 + L1MA2 LINE L1 2664 3163 -4402 6266 122 13 60 chr12 11970337 11976630 -132305859 + L1PA7 LINE L1 12 6151 -3 14320 177 14 19 chr12 11976630 11978380 -132304109 + L1MA2 LINE L1 3170 4928 -2795 233 29 0 29 chr12 11978380 11978415 -132304074 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 14320 177 14 19 chr12 11978415 11980680 -132301809 + L1MA2 LINE L1 4928 7173 -550 2374 75 0 7 chr12 11980680 11980987 -132301502 + AluSc SINE Alu 1 305 -4 14320 177 14 19 chr12 11980987 11981536 -132300953 + L1MA2 LINE L1 7173 7723 0 1541 255 51 16 chr12 11982261 11982712 -132299777 - L1ME LINE L1 -5598 472 6 219 271 0 0 chr12 11984030 11984078 -132298411 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 736 257 11 83 chr12 12084641 12084917 -132197572 - AluJb SINE Alu -54 258 3 1075 209 19 12 chr12 12085667 12085926 -132196563 - HSMAR2 DNA Mariner -2 1300 1040 36948 62 6 1 chr12 12085926 12090600 -132191889 + L1PA4 LINE L1 31 4730 -1416 7909 36 5 1 chr12 12090605 12091856 -132190633 + L1PA4 LINE L1 4900 6152 -3 936 259 79 20 chr12 12091871 12092265 -132190224 + L1ME3A LINE L1 5545 5961 -209 203 162 0 0 chr12 12092297 12092334 -132190155 + A-rich Low_complexity Low_complexity 4 40 0 2940 199 19 11 chr12 12092459 12093106 -132189383 - L1P LINE L1 -798 5348 4697 376 239 23 34 chr12 12093121 12093209 -132189280 + MLT1C LTR MaLR 1 87 -418 1076 181 0 0 chr12 12093209 12093375 -132189114 - FRAM SINE Alu -10 166 1 743 242 113 51 chr12 12093376 12093733 -132188756 + MLT1C LTR MaLR 80 618 -8 380 286 71 14 chr12 12094064 12094204 -132188285 - L2 LINE L2 -206 3066 2919 3604 64 2 7 chr12 12094269 12094719 -132187770 + LTR7 LTR ERV1 1 448 -2 21058 90 58 30 chr12 12094721 12097921 -132184568 + HERVH LTR ERV1 1 3290 -4423 3407 118 4 2 chr12 12097911 12098412 -132184077 + HERVH LTR ERV1 3492 3993 -3720 * 2901 138 0 2 chr12 12098414 12098835 -132183654 + HERVH LTR ERV1 4488 4907 -2806 2253 91 0 0 chr12 12099133 12099418 -132183071 + AluY SINE Alu 9 293 -18 1102 176 16 0 chr12 12100037 12100224 -132182265 - AluJb SINE Alu -2 310 121 3579 137 20 20 chr12 12100231 12100831 -132181658 - L1PA13 LINE L1 -8 6155 5556 438 185 0 0 chr12 12100831 12100896 -132181593 - AluJ/FLAM SINE Alu -237 75 11 1382 209 61 0 chr12 12100907 12101184 -132181305 - AluJo SINE Alu -18 294 1 236 277 60 0 chr12 12101261 12101344 -132181145 - L2 LINE L2 0 3313 3226 409 335 197 13 chr12 12101376 12101615 -132180874 + L3 LINE CR1 1220 1502 -75 1682 175 39 21 chr12 12101727 12102064 -132180425 + MER61A LTR ERV1 1 343 0 1741 157 7 4 chr12 12102133 12102414 -132180075 + AluJb SINE Alu 1 282 -30 33 0 0 0 chr12 12102419 12102452 -132180037 + AT_rich Low_complexity Low_complexity 1 33 0 1711 175 4 4 chr12 12103253 12103533 -132178956 + AluJo SINE Alu 3 282 -30 240 86 0 0 chr12 12103536 12103571 -132178918 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 275 311 62 50 chr12 12103573 12103734 -132178755 + MIR SINE MIR 20 182 -80 354 235 49 20 chr12 12104119 12104221 -132178268 + MIR SINE MIR 98 202 -60 203 86 0 29 chr12 12104807 12104842 -132177647 + (CCTG)n Simple_repeat Simple_repeat 4 37 0 3042 251 35 12 chr12 12106951 12107937 -132174552 + L1M4 LINE L1 2394 3402 -2744 252 284 0 0 chr12 12107957 12108063 -132174426 + L1M4 LINE L1 2915 3020 -3126 2591 52 0 0 chr12 12108086 12108394 -132174095 + AluY SINE Alu 2 309 -2 4816 201 29 25 chr12 12108396 12109469 -132173020 + HSMAR2 DNA Mariner 47 1123 -179 353 292 29 15 chr12 12109471 12109608 -132172881 + HERVL40 LTR ERVL 109 247 -5283 325 246 43 0 chr12 12110759 12110828 -132171661 - MER69 DNA AcHobo -97 80 9 26 0 0 0 chr12 12111059 12111085 -132171404 + AT_rich Low_complexity Low_complexity 1 26 0 347 310 35 105 chr12 12111478 12111678 -132170811 + HAL1 LINE L1 19 204 -2303 189 94 0 0 chr12 12111904 12111936 -132170553 + (TC)n Simple_repeat Simple_repeat 1 32 0 590 248 129 0 chr12 12112282 12112484 -132170005 - MLT1G1 LTR MaLR -311 284 57 199 297 62 0 chr12 12112713 12112777 -132169712 - MIR3 SINE MIR -40 168 101 382 272 111 19 chr12 12112802 12112964 -132169525 + MIR SINE MIR 86 262 0 3645 140 62 12 chr12 12113814 12114394 -132168095 - MER4B LTR ERV1 -1 609 1 435 138 319 0 chr12 12115229 12115323 -132167166 + MER3 DNA MER1_type 29 152 -57 2090 139 137 11 chr12 12115343 12115723 -132166766 + MSTA LTR MaLR 1 428 0 1718 181 10 23 chr12 12116130 12116440 -132166049 + AluJo SINE Alu 1 306 -6 5026 169 9 1 chr12 12116553 12117430 -132165059 - L1PA13 LINE L1 -1299 4847 3964 6432 91 31 8 chr12 12117418 12118707 -132163782 + L1PA13 LINE L1 4847 6163 0 2627 232 47 38 chr12 12119045 12119767 -132162722 + HSMAR2 DNA Mariner 205 993 -309 1996 125 11 3 chr12 12119767 12120054 -132162435 + L1PB1 LINE L1 5860 6148 -3 2627 232 47 38 chr12 12120054 12120367 -132162122 + HSMAR2 DNA Mariner 993 1302 0 26 30 0 0 chr12 12120796 12120829 -132161660 + AT_rich Low_complexity Low_complexity 1 33 0 999 231 41 19 chr12 12121137 12121250 -132161239 + AluJo SINE Alu 16 125 -187 180 0 0 0 chr12 12121250 12121270 -132161219 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 999 231 41 19 chr12 12121270 12121425 -132161064 + AluJo SINE Alu 125 290 -22 822 240 11 107 chr12 12121850 12122216 -132160273 + MLT1B LTR MaLR 47 377 -13 254 222 14 28 chr12 12122216 12122288 -132160201 - L2 LINE L2 -910 2404 2334 300 276 13 0 chr12 12123350 12123426 -132159063 - HERVL40 LTR ERVL -3403 2127 2051 1404 235 7 17 chr12 12123791 12124117 -132158372 + AluJo SINE Alu 3 325 0 417 299 22 7 chr12 12124695 12124832 -132157657 - HERVL40 LTR ERVL -5283 247 109 4780 208 22 36 chr12 12124834 12124936 -132157553 - HSMAR2 DNA Mariner -179 1123 1021 5979 97 6 68 chr12 12124936 12125817 -132156672 - LTR12 LTR ERV1 0 826 1 4780 208 22 36 chr12 12125817 12126849 -132155640 - HSMAR2 DNA Mariner -281 1021 5 225 203 0 34 chr12 12127590 12127649 -132154840 + L2 LINE L2 2334 2390 -924 833 223 11 114 chr12 12127666 12128016 -132154473 - MLT1B LTR MaLR -20 370 57 1770 241 64 11 chr12 12128611 12129047 -132153442 + L1MC4 LINE L1 7323 7781 -261 2186 134 13 0 chr12 12129057 12129364 -132153125 - AluSx SINE Alu 0 312 2 6056 81 1 13 chr12 12129365 12130194 -132152295 + L1PA14 LINE L1 5343 6161 0 990 153 59 72 chr12 12130751 12130973 -132151516 - MER20 DNA MER1_type 0 219 1 2037 133 7 10 chr12 12131120 12131421 -132151068 - AluSx SINE Alu -12 300 1 3127 166 49 53 chr12 12131423 12132172 -132150317 - L1MB2 LINE L1 -346 5825 5105 276 209 33 55 chr12 12132309 12132400 -132150089 + Zaphod DNA AcHobo 3943 4031 0 337 188 104 10 chr12 12132411 12132507 -132149982 - HAL1 LINE L1 -1160 1347 1243 800 277 115 58 chr12 12132518 12132697 -132149792 - HAL1 LINE L1 -1310 1197 1030 2327 85 0 3 chr12 12132697 12132991 -132149498 + AluSc SINE Alu 1 293 -16 800 277 115 58 chr12 12132991 12133548 -132148941 - HAL1 LINE L1 -1477 1030 419 532 285 44 13 chr12 12133999 12134227 -132148262 + L2 LINE L2 1850 2084 -1230 431 304 9 0 chr12 12134221 12134336 -132148153 - L2 LINE L2 -1 3271 3156 * 273 329 75 28 chr12 12134315 12134570 -132147919 + L2 LINE L2 2050 2316 -998 * 247 234 0 0 chr12 12134763 12134810 -132147679 + MER3 DNA MER1_type 41 87 -122 * 296 216 27 0 chr12 12134775 12134849 -132147640 - MER3 DNA MER1_type -5 204 129 31 26 0 0 chr12 12134849 12134887 -132147602 + AT_rich Low_complexity Low_complexity 1 38 0 856 206 29 29 chr12 12135017 12135255 -132147234 + L1MDa LINE L1 2322 2559 -3981 34 65 0 0 chr12 12135328 12135390 -132147099 + AT_rich Low_complexity Low_complexity 1 62 0 213 282 165 0 chr12 12135555 12135640 -132146849 + L2 LINE L2 2123 2221 -1093 252 285 97 35 chr12 12136810 12136954 -132145535 - L2 LINE L2 -675 2639 2487 3841 156 23 68 chr12 12137364 12137612 -132144877 + L1MB2 LINE L1 5415 5673 -498 1943 151 0 0 chr12 12137612 12137896 -132144593 - AluSx SINE Alu -23 289 6 3841 156 23 68 chr12 12137896 12138437 -132144052 + L1MB2 LINE L1 5673 6168 -3 650 236 16 102 chr12 12138451 12138705 -132143784 - MIR SINE MIR -1 261 30 201 268 179 36 chr12 12139601 12139713 -132142776 - L2 LINE L2 -4 3268 3141 180 337 23 35 chr12 12139865 12139951 -132142538 - L2 LINE L2 -208 3064 2980 8718 193 31 19 chr12 12140178 12141807 -132140682 + MSTB-int LTR MaLR 3 1651 0 681 190 8 0 chr12 12141807 12141928 -132140561 + MSTB LTR MaLR 1 122 -304 354 248 57 29 chr12 12142143 12142248 -132140241 + L2 LINE L2 3202 3309 -4 466 261 134 0 chr12 12142375 12142509 -132139980 + L2 LINE L2 2923 3074 -239 816 146 0 23 chr12 12142595 12142725 -132139764 - FLAM_C SINE Alu -16 127 1 340 225 225 22 chr12 12142736 12142874 -132139615 + L2 LINE L2 3148 3313 0 22 0 0 0 chr12 12142911 12142933 -132139556 + AT_rich Low_complexity Low_complexity 1 22 0 1667 170 46 0 chr12 12143402 12143684 -132138805 - AluJb SINE Alu -17 295 1 207 0 0 0 chr12 12143738 12143761 -132138728 + (T)n Simple_repeat Simple_repeat 1 23 0 1404 212 3 35 chr12 12144903 12145056 -132137433 - L1MC3 LINE L1 -1857 5928 5789 1827 149 3 44 chr12 12145056 12145371 -132137118 + AluJo SINE Alu 1 302 -10 1404 212 3 35 chr12 12145371 12145533 -132136956 - L1MC3 LINE L1 -1996 5789 5623 22 0 0 0 chr12 12145923 12145945 -132136544 + AT_rich Low_complexity Low_complexity 1 22 0 312 160 0 0 chr12 12146131 12146181 -132136308 - MIR SINE MIR -67 141 92 453 274 70 13 chr12 12146327 12146484 -132136005 - MIR3 SINE MIR -10 198 33 1552 174 7 27 chr12 12147143 12147436 -132135053 - AluJo SINE Alu -10 302 16 979 287 93 28 chr12 12148760 12149231 -132133258 + HAL1 LINE L1 1347 1848 -659 323 216 0 34 chr12 12149277 12149365 -132133124 + HAL1 LINE L1 2012 2096 -411 231 282 167 0 chr12 12149696 12149774 -132132715 - MLT1F LTR MaLR -300 267 177 528 243 39 72 chr12 12149807 12149988 -132132501 - MLT1F LTR MaLR -341 201 27 198 302 54 85 chr12 12150130 12150259 -132132230 - L2 LINE L2 -385 2928 2804 * 839 273 131 35 chr12 12150258 12150745 -132131744 - L2 LINE L2 -1385 1929 1396 729 146 0 0 chr12 12150895 12151005 -132131484 - MSTA LTR MaLR 0 428 319 661 170 0 0 chr12 12151009 12151103 -132131386 - AluS SINE Alu -217 95 2 1369 162 113 35 chr12 12151266 12151550 -132130939 + AluJo SINE Alu 1 306 -6 1338 164 0 5 chr12 12152095 12152308 -132130181 + AluJb SINE Alu 85 296 -16 187 308 15 15 chr12 12152310 12152375 -132130114 + MER5A DNA MER1_type 46 110 -79 291 381 34 0 chr12 12152718 12152865 -132129624 + L2 LINE L2 3121 3272 0 194 212 0 0 chr12 12153441 12153474 -132129015 + L2 LINE L2 3271 3303 -10 829 183 0 0 chr12 12153687 12153818 -132128671 + FLAM_C SINE Alu 1 131 -2 726 231 15 0 chr12 12153877 12154033 -132128456 - AluJb SINE Alu 0 305 148 720 202 0 0 chr12 12154192 12154311 -132128178 + FLAM_A SINE Alu 1 119 -14 417 273 51 21 chr12 12154434 12154692 -132127797 + MLT1J LTR MaLR 33 337 -174 242 135 0 0 chr12 12154738 12154775 -132127714 + MLT1J LTR MaLR 427 463 -48 217 200 20 20 chr12 12155343 12155393 -132127096 - MIR SINE MIR -81 127 78 2061 196 39 61 chr12 12155437 12155948 -132126541 - LTR54 LTR ERV1 -3 507 8 999 252 27 17 chr12 12156073 12156371 -132126118 - AluJb SINE Alu -1 301 1 4569 79 35 36 chr12 12156568 12157225 -132125264 - SVA Other Other 0 1386 731 1593 67 19 19 chr12 12159470 12159679 -132122810 - L1PA10 LINE L1 -12 6156 5948 663 156 11 22 chr12 12160389 12160569 -132121920 + CT-rich Low_complexity Low_complexity 2 179 0 344 67 0 0 chr12 12160569 12160644 -132121845 + (TTTG)n Simple_repeat Simple_repeat 1 75 0 375 268 103 56 chr12 12161474 12161687 -132120802 + MIR SINE MIR 6 228 -34 773 350 91 20 chr12 12161755 12162415 -132120074 + L2 LINE L2 1395 2101 -1213 1307 242 39 76 chr12 12162596 12162954 -132119535 - L1MDa LINE L1 -3930 2610 2283 1638 52 0 0 chr12 12162954 12163147 -132119342 + L1PA4 LINE L1 5963 6155 0 1307 242 39 76 chr12 12163147 12163407 -132119082 - L1MDa LINE L1 -4257 2283 2015 3779 182 152 17 chr12 12163432 12164502 -132117987 - L1P LINE L1 -1499 4647 3449 1800 190 0 0 chr12 12164766 12165055 -132117434 + AluJb SINE Alu 1 289 -23 560 53 13 0 chr12 12166448 12166524 -132115965 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 1740 124 0 4 chr12 12166525 12166767 -132115722 - AluSx SINE Alu -39 273 33 576 205 114 18 chr12 12166767 12166933 -132115556 - FRAM SINE Alu 0 176 1 209 250 0 0 chr12 12167530 12167574 -132114915 + C-rich Low_complexity Low_complexity 1 44 0 32 0 0 0 chr12 12167747 12167779 -132114710 + GC_rich Low_complexity Low_complexity 1 32 0 226 349 25 34 chr12 12168055 12168290 -132114199 - MLT1G1 LTR MaLR -356 239 7 290 262 204 47 chr12 12169229 12169401 -132113088 + MIR SINE MIR 8 206 -56 1203 234 155 29 chr12 12170466 12170911 -132111578 - MLT1D LTR MaLR -4 501 1 23 68 0 0 chr12 12171184 12171228 -132111261 + GC_rich Low_complexity Low_complexity 1 44 0 343 223 0 42 chr12 12171228 12171283 -132111206 + C-rich Low_complexity Low_complexity 6 62 -143 189 94 0 0 chr12 12171283 12171315 -132111174 + (CCCCCG)n Simple_repeat Simple_repeat 5 36 0 343 223 0 42 chr12 12171315 12171441 -132111048 + C-rich Low_complexity Low_complexity 62 205 0 266 229 16 64 chr12 12171373 12171561 -132110928 + (CCCG)n Simple_repeat Simple_repeat 2 180 0 * 2602 32 0 0 chr12 12171714 12172024 -132110465 - L1P LINE L1 -1001 5145 4836 411 223 29 29 chr12 12172023 12172162 -132110327 - L1ME LINE L1 -606 5556 5418 * 437 246 41 16 chr12 12172688 12172810 -132109679 + MER65A LTR ERV1 1 125 -320 327 272 92 95 chr12 12172816 12173184 -132109305 + MER65A LTR ERV1 79 445 0 316 270 56 71 chr12 12173296 12173422 -132109067 - L2 LINE L2 -5 3267 3144 2284 72 10 3 chr12 12174194 12174501 -132107988 - AluSc SINE Alu 0 309 1 605 144 34 34 chr12 12174836 12174954 -132107535 + FLAM_C SINE Alu 7 124 -19 193 284 37 12 chr12 12175882 12175963 -132106526 + L2 LINE L2 2307 2389 -925 495 219 88 22 chr12 12175969 12176106 -132106383 - MLT1B LTR MaLR -5 385 240 265 259 50 65 chr12 12176141 12176342 -132106147 - L1ME LINE L1 -5134 936 739 351 363 6 22 chr12 12176716 12176895 -132105594 + G-rich Low_complexity Low_complexity 3 178 0 202 385 11 17 chr12 12176812 12176991 -132105498 + GA-rich Low_complexity Low_complexity 1 178 0 * 2013 184 73 14 chr12 12178597 12179091 -132103398 - Charlie1b DNA MER1_type 0 523 1 1829 165 0 0 chr12 12180377 12180674 -132101815 + AluJb SINE Alu 1 297 -15 2706 13 0 0 chr12 12182580 12182887 -132099602 + AluYa5 SINE Alu 1 307 -4 315 49 0 0 chr12 12183179 12183220 -132099269 + (CA)n Simple_repeat Simple_repeat 2 42 0 311 319 28 28 chr12 12183238 12183382 -132099107 + L2 LINE L2 3123 3266 -6 296 379 63 19 chr12 12183407 12183613 -132098876 - L2 LINE L2 -527 2787 2573 190 260 240 32 chr12 12183644 12183798 -132098691 - L2 LINE L2 -902 2412 2227 253 287 30 10 chr12 12184195 12184296 -132098193 + MIR3 SINE MIR 87 189 -19 1107 73 7 0 chr12 12185602 12185753 -132096736 - AluY SINE Alu -5 306 155 977 302 205 19 chr12 12185783 12186653 -132095836 - L2 LINE L2 -660 2654 1624 489 322 29 73 chr12 12186860 12187105 -132095384 - MIR SINE MIR -9 253 20 350 182 234 0 chr12 12187433 12187510 -132094979 - MER69 DNA AcHobo -1131 95 1 21 36 0 0 chr12 12187790 12187818 -132094671 + AT_rich Low_complexity Low_complexity 1 28 0 1772 146 7 4 chr12 12187843 12188146 -132094343 - AluJb SINE Alu 0 304 1 565 326 113 34 chr12 12188250 12188578 -132093911 + L3 LINE CR1 1212 1565 -12 219 69 0 0 chr12 12189281 12189310 -132093179 + (TGG)n Simple_repeat Simple_repeat 3 31 0 572 345 0 0 chr12 12189316 12189487 -132093002 - MIR SINE MIR -3 259 89 206 357 32 45 chr12 12192714 12192868 -132089621 - MER5A DNA MER1_type -5 184 33 334 299 24 0 chr12 12193425 12193552 -132088937 - L1ME LINE L1 -316 5805 5676 1814 119 17 20 chr12 12194108 12194402 -132088087 - AluSg SINE Alu -17 293 1 270 287 238 0 chr12 12194442 12194543 -132087946 - MER5A DNA MER1_type -14 175 51 266 302 35 0 chr12 12194598 12194684 -132087805 - MER110 LTR ERV1 0 491 403 2012 153 18 12 chr12 12194702 12195035 -132087454 - MER1B DNA MER1_type -4 335 1 3066 111 125 36 chr12 12195037 12195596 -132086893 + MER4B LTR ERV1 2 610 0 897 208 161 74 chr12 12195602 12195981 -132086508 - MER110A LTR ERV1 -56 412 1 373 318 65 46 chr12 12196543 12196760 -132085729 - L2 LINE L2 -475 2839 2619 242 239 87 22 chr12 12197089 12197181 -132085308 - MLT1J1 LTR MaLR -1 445 348 * 1198 283 57 14 chr12 12197176 12197547 -132084942 - MLT1J LTR MaLR -110 401 15 254 356 177 17 chr12 12197635 12198042 -132084447 - L2 LINE L2 -708 2606 2135 3671 222 55 3 chr12 12199122 12200032 -132082457 - L1ME1 LINE L1 -27 6139 5191 806 169 0 40 chr12 12200073 12200221 -132082268 - FAM SINE Alu -43 142 1 316 184 66 0 chr12 12200286 12200362 -132082127 - L1ME1 LINE L1 -973 5173 5093 399 176 5 0 chr12 12200396 12200483 -132082006 + L1M4 LINE L1 4736 4825 -1321 2241 119 94 44 chr12 12200507 12200797 -132081692 - Ricksha DNA DNA -6 3240 2919 1559 88 14 0 chr12 12200797 12201012 -132081477 + L1PA11 LINE L1 5956 6173 -1 2241 119 94 44 chr12 12201012 12201156 -132081333 - Ricksha DNA DNA -327 2919 2784 * 2783 173 6 16 chr12 12201152 12201644 -132080845 - Ricksha DNA DNA -2656 590 104 916 260 56 54 chr12 12201653 12202137 -132080352 - L1MC5 LINE L1 -282 7679 7195 272 346 13 97 chr12 12202516 12202744 -132079745 + L3 LINE CR1 848 1056 -521 846 222 48 39 chr12 12202916 12203247 -132079242 - L1MC4 LINE L1 -1060 6982 6449 515 315 51 47 chr12 12203575 12203851 -132078638 - L2 LINE L2 -661 2653 2377 788 212 114 0 chr12 12203952 12204145 -132078344 + MER58C DNA MER1_type 1 215 0 251 346 110 15 chr12 12205202 12205338 -132077151 + L2 LINE L2 3124 3272 0 812 205 13 8 chr12 12205515 12205711 -132076778 + MLT1J LTR MaLR 5 163 -287 604 118 7 37 chr12 12205890 12206026 -132076463 + (TTTC)n Simple_repeat Simple_repeat 4 135 0 1332 185 34 14 chr12 12206042 12206334 -132076155 - L1MB3 LINE L1 -3 6180 5883 22 0 0 0 chr12 12206337 12206359 -132076130 + AT_rich Low_complexity Low_complexity 1 22 0 420 158 0 13 chr12 12206361 12206437 -132076052 - FLAM_A SINE Alu -21 121 47 2022 110 10 10 chr12 12206460 12206760 -132075729 - AluSc SINE Alu -9 300 1 600 174 0 0 chr12 12207146 12207244 -132075245 - AluJ/FLAM SINE Alu -210 102 5 206 235 153 24 chr12 12207630 12207715 -132074774 - MIR3 SINE MIR -10 198 103 213 94 0 0 chr12 12211921 12211953 -132070536 + (T)n Simple_repeat Simple_repeat 1 32 0 2388 251 74 8 chr12 12212080 12213357 -132069132 - L1MB3 LINE L1 -574 5668 4299 205 317 17 0 chr12 12215365 12215425 -132067064 - MIR SINE MIR -117 145 85 285 350 6 13 chr12 12215710 12215867 -132066622 + MER112 DNA MER1_type 1 156 -104 207 0 0 0 chr12 12215869 12215892 -132066597 + (CTATG)n Simple_repeat Simple_repeat 2 24 0 232 279 36 27 chr12 12216041 12216152 -132066337 - MER112 DNA MER1_type -143 117 6 315 0 0 0 chr12 12216197 12216232 -132066257 + (TG)n Simple_repeat Simple_repeat 1 35 0 456 77 0 0 chr12 12216232 12216297 -132066192 + (GA)n Simple_repeat Simple_repeat 2 66 0 263 296 0 14 chr12 12216624 12216695 -132065794 + (CA)n Simple_repeat Simple_repeat 1 70 0 194 247 180 45 chr12 12216822 12216911 -132065578 + MIR SINE MIR 42 142 -66 269 233 33 0 chr12 12217893 12217953 -132064536 - MIR SINE MIR -6 256 195 454 208 10 10 chr12 12218181 12218277 -132064212 - MER39 LTR ERV1 -336 371 276 397 250 75 25 chr12 12218266 12218386 -132064103 - MER39 LTR ERV1 -581 126 1 * 422 200 0 0 chr12 12218577 12218657 -132063832 + MER116 DNA Mariner 1 80 0 449 146 101 0 chr12 12219180 12219269 -132063220 + MIR SINE MIR 73 170 -92 1753 164 62 49 chr12 12219273 12219658 -132062831 - MLT1B LTR MaLR 0 390 1 181 190 35 9 chr12 12219892 12220008 -132062481 + (TA)n Simple_repeat Simple_repeat 2 120 0 240 320 60 77 chr12 12220118 12220471 -132062018 + L2 LINE L2 2556 2902 -412 2710 183 14 2 chr12 12220771 12221268 -132061221 + L1MB3 LINE L1 5681 6183 0 2286 103 3 0 chr12 12221687 12221979 -132060510 + AluSq SINE Alu 1 293 -20 211 295 0 32 chr12 12223151 12223246 -132059243 + A-rich Low_complexity Low_complexity 3 94 0 360 0 0 0 chr12 12223726 12223766 -132058723 + (TG)n Simple_repeat Simple_repeat 1 40 0 2335 81 3 0 chr12 12223970 12224268 -132058221 + AluSc SINE Alu 1 299 -10 2060 88 19 0 chr12 12225315 12225575 -132056914 - AluSx SINE Alu -11 301 37 974 192 67 10 chr12 12226383 12226557 -132055932 - AluJb SINE Alu -8 304 117 278 0 54 0 chr12 12226557 12226594 -132055895 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 974 192 67 10 chr12 12226594 12226612 -132055877 - AluJb SINE Alu -195 117 101 2437 56 3 7 chr12 12226732 12226909 -132055580 - AluY SINE Alu -10 301 124 212 0 36 0 chr12 12226909 12226937 -132055552 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 2437 56 3 7 chr12 12226937 12227061 -132055428 - AluY SINE Alu -187 124 1 28 0 0 0 chr12 12227396 12227424 -132055065 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 12227574 12227596 -132054893 + AT_rich Low_complexity Low_complexity 1 22 0 2365 76 7 3 chr12 12231298 12231600 -132050889 - AluSc SINE Alu -6 303 1 1553 194 16 32 chr12 12231929 12232238 -132050251 + AluJo SINE Alu 1 304 -8 1735 202 56 31 chr12 12232281 12232637 -132049852 + MLT1A1 LTR MaLR 1 365 0 1324 56 6 0 chr12 12232740 12232901 -132049588 - L1PA4 LINE L1 -1 6154 5993 200 188 0 0 chr12 12233067 12233099 -132049390 + (TG)n Simple_repeat Simple_repeat 1 32 0 30 69 0 0 chr12 12233194 12233252 -132049237 + AT_rich Low_complexity Low_complexity 1 58 0 22 56 0 0 chr12 12233564 12233600 -132048889 + AT_rich Low_complexity Low_complexity 1 36 0 864 228 146 24 chr12 12234651 12235020 -132047469 - L1M4 LINE L1 -1546 4994 4581 4463 242 93 26 chr12 12235163 12236752 -132045737 - L1MDa LINE L1 -974 5566 3872 294 208 26 0 chr12 12236793 12236870 -132045619 + L1M4 LINE L1 3863 3941 -2205 2477 57 0 0 chr12 12236936 12237233 -132045256 - AluY SINE Alu -13 298 2 252 284 0 0 chr12 12237256 12237362 -132045127 - L1M4 LINE L1 -3126 3020 2915 3681 247 33 55 chr12 12237382 12238922 -132043567 - L1MDa LINE L1 -2744 3796 2279 1638 52 0 0 chr12 12238922 12239115 -132043374 + L1PA4 LINE L1 5963 6155 0 3681 247 33 55 chr12 12239115 12239375 -132043114 - L1MDa LINE L1 -4261 2279 2015 16968 42 1 1 chr12 12239400 12241449 -132041040 - L1P LINE L1 -1499 4647 2599 484 229 98 49 chr12 12241566 12241781 -132040708 - MLT1A2 LTR MaLR 0 549 335 493 310 33 18 chr12 12242226 12242561 -132039928 + L1M4 LINE L1 4938 5277 -869 648 222 52 20 chr12 12242572 12242725 -132039764 + MER63 DNA MER1_type 2 785 -277 2636 132 48 10 chr12 12242853 12243269 -132039220 - MSTB1 LTR MaLR 0 432 1 1007 252 19 56 chr12 12243393 12243714 -132038775 - L1MD3 LINE L1 -1 7994 7686 1196 252 45 38 chr12 12244232 12244683 -132037806 + MER77 LTR ERV1 177 599 -6 21 71 0 0 chr12 12245512 12245554 -132036935 + AT_rich Low_complexity Low_complexity 1 42 0 7683 52 0 15 chr12 12245629 12246587 -132035902 + L1PA8 LINE L1 5221 6164 -8 565 304 92 17 chr12 12248275 12248309 -132034180 - MIR SINE MIR -4 258 228 2520 152 22 0 chr12 12248309 12248717 -132033772 - L1MB5 LINE L1 -12 6162 5746 565 304 92 17 chr12 12248717 12248922 -132033567 - MIR SINE MIR -34 228 1 273 169 0 0 chr12 12250002 12250061 -132032428 + (TG)n Simple_repeat Simple_repeat 1 59 0 612 168 11 6 chr12 12250094 12250273 -132032216 + (TG)n Simple_repeat Simple_repeat 1 180 0 194 219 0 0 chr12 12250472 12250513 -132031976 - MIR SINE MIR -103 105 65 1347 214 63 9 chr12 12250677 12251008 -132031481 - MLT1A2 LTR MaLR -25 349 1 815 101 8 214 chr12 12251170 12251408 -132031081 + MER53 DNA DNA 1 189 0 192 77 0 0 chr12 12251517 12251543 -132030946 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 1569 222 0 0 chr12 12251543 12251895 -132030594 - AluJb SINE Alu 0 354 3 218 338 0 12 chr12 12252159 12252239 -132030250 + GA-rich Low_complexity Low_complexity 6 84 0 360 315 12 42 chr12 12252341 12252506 -132029983 - MIR3 SINE MIR -7 201 42 342 330 9 0 chr12 12252528 12252640 -132029849 - MIR3 SINE MIR -11 197 85 252 0 0 0 chr12 12253047 12253075 -132029414 + (TG)n Simple_repeat Simple_repeat 2 29 0 665 100 11 0 chr12 12253577 12253667 -132028822 - FLAM_A SINE Alu -20 122 32 445 115 16 0 chr12 12255784 12255845 -132026644 + U7 snRNA snRNA 2 63 0 1284 87 5 32 chr12 12256089 12256274 -132026215 - LTR9 LTR ERV1 -432 180 1 239 241 0 0 chr12 12256359 12256413 -132026076 + MLT1C LTR MaLR 302 355 -112 4054 110 282 70 chr12 12256415 12257694 -132024795 + pTR5 LTR ERV1 743 2438 0 605 189 0 9 chr12 12257697 12257808 -132024681 + MLT1C LTR MaLR 354 463 -4 270 279 11 28 chr12 12258567 12258681 -132023808 + MLT1F LTR MaLR 25 105 -437 293 195 29 2 chr12 12258707 12258775 -132023714 - MLT1B LTR MaLR 0 390 330 2055 72 3 51 chr12 12258863 12259185 -132023304 - AluSg SINE Alu 0 308 1 352 310 67 106 chr12 12259185 12259440 -132023049 - L2 LINE L2 -10 3262 3018 246 340 122 20 chr12 12259564 12259761 -132022728 - L2 LINE L2 -456 2858 2642 4628 199 94 43 chr12 12259999 12260416 -132022073 + L1MC4 LINE L1 6458 6852 -1190 2085 99 0 4 chr12 12260416 12260711 -132021778 + AluY SINE Alu 12 305 0 4628 199 94 43 chr12 12260711 12260941 -132021548 + L1MC4 LINE L1 6852 7069 -973 1941 126 29 0 chr12 12260941 12261219 -132021270 - AluJb SINE Alu -26 286 1 4628 199 94 43 chr12 12261219 12261828 -132020661 + L1MC4 LINE L1 7069 7781 -261 1161 133 24 0 chr12 12261850 12262016 -132020473 - AluSg/x SINE Alu -3 309 140 1174 200 18 49 chr12 12262020 12262305 -132020184 + L1MC4 LINE L1 7767 8042 0 380 248 5 101 chr12 12262317 12262456 -132020033 + L1ME1 LINE L1 5927 6039 -127 1292 174 109 7 chr12 12262456 12262732 -132019757 - AluJo SINE Alu -8 304 1 380 248 5 101 chr12 12262732 12262810 -132019679 + L1ME1 LINE L1 6039 6123 -43 389 287 90 0 chr12 12263247 12263369 -132019120 + MIR3 SINE MIR 9 141 -67 199 0 0 61 chr12 12264276 12264309 -132018180 + (ATG)n Simple_repeat Simple_repeat 3 33 0 235 287 124 8 chr12 12264388 12264517 -132017972 - MIR SINE MIR -66 196 53 186 43 0 0 chr12 12264532 12264555 -132017934 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 727 114 9 44 chr12 12264558 12264672 -132017817 - FRAM SINE Alu -30 146 37 415 92 0 40 chr12 12265974 12266050 -132016439 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 341 70 18 0 chr12 12266749 12266806 -132015683 + (TG)n Simple_repeat Simple_repeat 2 59 0 313 157 0 0 chr12 12266811 12266862 -132015627 + MER53 DNA DNA 139 189 0 3274 197 66 92 chr12 12266883 12267509 -132014980 - L1MC3 LINE L1 -1109 6676 6035 1869 154 7 3 chr12 12267509 12267795 -132014694 - AluJo SINE Alu -25 287 1 3274 197 66 92 chr12 12267795 12268088 -132014401 - L1MC3 LINE L1 -1750 6035 5788 1821 149 3 48 chr12 12268088 12268404 -132014085 + AluJo SINE Alu 1 302 -10 3274 197 66 92 chr12 12268404 12268566 -132013923 - L1MC3 LINE L1 -1997 5788 5623 22 0 0 0 chr12 12268956 12268978 -132013511 + AT_rich Low_complexity Low_complexity 1 22 0 312 160 0 0 chr12 12269164 12269214 -132013275 - MIR SINE MIR -67 141 92 453 274 70 13 chr12 12269360 12269517 -132012972 - MIR3 SINE MIR -10 198 33 1627 177 3 32 chr12 12270176 12270487 -132012002 - AluJo SINE Alu -10 302 1 287 167 0 0 chr12 12271175 12271217 -132011272 + 5S rRNA rRNA 1 42 -79 1932 103 69 28 chr12 12271425 12271716 -132010773 - AluSx SINE Alu -9 303 1 417 234 102 16 chr12 12271942 12272070 -132010419 + L1ME4a LINE L1 5979 6117 -4 1766 152 9 48 chr12 12272164 12272480 -132010009 + AluJo SINE Alu 5 308 -4 309 274 135 55 chr12 12273195 12273432 -132009057 + MLT1L LTR MaLR 355 610 -5 183 42 0 0 chr12 12273726 12273750 -132008739 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 1623 192 7 0 chr12 12273750 12274031 -132008458 - AluJb SINE Alu -27 285 3 27 81 0 0 chr12 12274039 12274101 -132008388 + AT_rich Low_complexity Low_complexity 1 62 0 2150 135 18 6 chr12 12274569 12274902 -132007587 + MER1B DNA MER1_type 3 339 0 25 31 0 0 chr12 12274913 12274945 -132007544 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr12 12275084 12275112 -132007377 + AT_rich Low_complexity Low_complexity 1 28 0 2663 188 27 20 chr12 12275142 12275915 -132006574 - L1M4 LINE L1 -386 5798 5028 2313 78 10 10 chr12 12275915 12276210 -132006279 - AluSg SINE Alu -15 295 1 2663 188 27 20 chr12 12276210 12276260 -132006229 - L1M4 LINE L1 -1156 5028 4980 5103 106 11 68 chr12 12276266 12276389 -132006100 - L1PB4 LINE L1 -14 6142 6014 2517 66 0 0 chr12 12276389 12276691 -132005798 - AluY SINE Alu -9 302 1 5103 106 11 68 chr12 12276691 12276894 -132005595 - L1PB4 LINE L1 -142 6014 5801 2375 85 0 16 chr12 12276894 12277210 -132005279 - AluY SINE Alu 0 311 1 5103 106 11 68 chr12 12277210 12277758 -132004731 - L1PB4 LINE L1 -355 5801 5317 9849 229 50 25 chr12 12278246 12278406 -132004083 - L1M4 LINE L1 -814 5332 5178 2163 121 7 0 chr12 12278406 12278711 -132003778 - AluSx SINE Alu -3 309 3 9849 229 50 25 chr12 12278711 12281316 -132001173 - L1M4 LINE L1 -968 5178 2263 480 244 29 70 chr12 12281316 12281558 -132000931 - L1MC4 LINE L1 -97 8225 2725 1709 150 26 46 chr12 12282323 12282630 -131999859 - AluJo SINE Alu -11 301 1 3719 148 42 17 chr12 12282652 12282864 -131999625 - L1MC4 LINE L1 -4401 2025 1820 2405 71 10 0 chr12 12282864 12283160 -131999329 + AluSp SINE Alu 1 299 -14 3719 148 42 17 chr12 12283160 12283886 -131998603 - L1MC4 LINE L1 -4606 1820 982 22 0 0 0 chr12 12284257 12284279 -131998210 + AT_rich Low_complexity Low_complexity 1 22 0 1056 154 57 92 chr12 12284889 12285116 -131997373 - MER20 DNA MER1_type 0 219 1 399 262 110 4 chr12 12285417 12285596 -131996893 + LTR40c LTR ERVL 142 346 -119 436 209 9 35 chr12 12285724 12285839 -131996650 + MIR SINE MIR 86 197 -65 2660 146 33 12 chr12 12285911 12286330 -131996159 - MSTA LTR MaLR 0 428 1 21 36 0 0 chr12 12287472 12287500 -131994989 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr12 12287579 12287606 -131994883 + AT_rich Low_complexity Low_complexity 1 27 0 1768 157 17 3 chr12 12287614 12287901 -131994588 + AluJo SINE Alu 9 299 -13 2205 119 3 6 chr12 12288278 12288589 -131993900 - AluSx SINE Alu -2 310 1 1685 158 18 7 chr12 12290162 12290485 -131992004 + AluJo SINE Alu 1 326 0 507 139 0 0 chr12 12290544 12290630 -131991859 + L1PB2 LINE L1 6063 6148 -3 279 119 169 0 chr12 12290799 12290858 -131991631 + L2 LINE L2 3201 3269 -3 192 40 0 0 chr12 12290871 12290896 -131991593 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 25 0 0 0 chr12 12291292 12291317 -131991172 + AT_rich Low_complexity Low_complexity 1 25 0 1647 167 10 20 chr12 12291642 12291941 -131990548 + AluJo SINE Alu 1 296 -16 267 293 35 52 chr12 12291998 12292114 -131990375 + L2 LINE L2 3193 3306 -7 265 286 65 13 chr12 12292753 12292830 -131989659 + HAL1 LINE L1 5 85 -2422 780 159 56 0 chr12 12292839 12292965 -131989524 + FLAM_A SINE Alu 1 133 0 241 202 34 92 chr12 12293214 12293333 -131989156 + HAL1 LINE L1 915 1026 -1481 201 356 71 47 chr12 12293359 12293612 -131988877 + L2 LINE L2 2366 2624 -690 336 311 108 78 chr12 12293759 12294103 -131988386 + L2 LINE L2 2826 3179 -93 198 347 28 0 chr12 12294236 12294308 -131988181 - MIR SINE MIR -108 154 81 1053 117 0 7 chr12 12294551 12294696 -131987793 + AluSq/x SINE Alu 1 144 -169 2513 52 0 0 chr12 12294697 12294988 -131987501 + AluY SINE Alu 1 291 -20 35 0 0 0 chr12 12294988 12295023 -131987466 + AT_rich Low_complexity Low_complexity 1 35 0 853 180 186 6 chr12 12295023 12295206 -131987283 + AluSq SINE Alu 1 216 -97 26 0 0 0 chr12 12295223 12295249 -131987240 + AT_rich Low_complexity Low_complexity 1 26 0 427 193 220 37 chr12 12295449 12295558 -131986931 - FLAM_A SINE Alu -4 129 1 481 296 98 40 chr12 12296170 12296498 -131985991 + L2 LINE L2 2148 2494 -820 844 146 0 111 chr12 12297227 12297398 -131985091 + AluJb SINE Alu 141 292 -20 2187 132 0 22 chr12 12297418 12297737 -131984752 + AluSx SINE Alu 1 312 0 2061 140 0 16 chr12 12297998 12298312 -131984177 - AluSx SINE Alu -3 309 1 276 125 47 0 chr12 12298778 12298842 -131983647 + CT-rich Low_complexity Low_complexity 3 69 0 2513 71 0 3 chr12 12298870 12299180 -131983309 + AluY SINE Alu 1 309 -2 274 218 136 55 chr12 12300195 12300305 -131982184 + MIR SINE MIR 11 129 -133 368 162 18 90 chr12 12300594 12300705 -131981784 - L2 LINE L2 -14 3299 3197 2380 91 0 0 chr12 12300739 12301035 -131981454 + AluSp SINE Alu 1 296 -17 1548 253 62 48 chr12 12301420 12301703 -131980786 - L2 LINE L2 -254 3059 2781 1785 182 11 40 chr12 12301703 12302055 -131980434 - MER61A LTR ERV1 0 343 2 1548 253 62 48 chr12 12302055 12302443 -131980046 - L2 LINE L2 -532 2781 2368 2040 130 20 0 chr12 12302939 12303240 -131979249 + AluSx SINE Alu 1 307 -5 542 359 28 35 chr12 12303300 12303590 -131978899 + L2 LINE L2 2486 2773 -541 395 285 46 26 chr12 12303594 12303745 -131978744 - MIR SINE MIR 0 262 109 1019 322 55 21 chr12 12304368 12304902 -131977587 + L2 LINE L2 2765 3313 0 2316 90 0 0 chr12 12304927 12305216 -131977273 - AluSx SINE Alu -17 295 7 412 288 31 31 chr12 12305703 12305863 -131976626 - MIR3 SINE MIR -40 168 9 1261 180 71 59 chr12 12306174 12306513 -131975976 + MER2 DNA MER2_type 2 344 0 343 228 106 41 chr12 12306761 12306884 -131975605 + MIR SINE MIR 21 151 -57 697 261 35 39 chr12 12306959 12307189 -131975300 + MER112 DNA MER1_type 23 251 -9 227 385 31 0 chr12 12307715 12307845 -131974644 + L2 LINE L2 2685 2818 -496 622 67 90 0 chr12 12308135 12308254 -131974235 - AluSg/x SINE Alu 0 308 182 180 235 118 20 chr12 12308420 12308471 -131974018 + L2 LINE L2 3141 3196 -76 1786 126 9 82 chr12 12309226 12309543 -131972946 + AluSx SINE Alu 1 294 -18 321 246 56 24 chr12 12310039 12310165 -131972324 + L1ME4a LINE L1 5989 6118 -3 396 255 0 0 chr12 12311411 12311505 -131970984 - MIR SINE MIR 0 262 169 796 270 107 41 chr12 12311516 12311915 -131970574 - MLT1J2 LTR MaLR 0 450 59 576 186 21 103 chr12 12311915 12312109 -131970380 + MER104 DNA MER2_type 3 180 0 796 270 107 41 chr12 12312109 12312135 -131970354 - MLT1J2 LTR MaLR -391 59 36 2109 81 0 4 chr12 12312516 12312775 -131969714 + AluSg SINE Alu 1 258 -52 207 0 0 0 chr12 12312807 12312830 -131969659 + (TTG)n Simple_repeat Simple_repeat 2 24 0 562 334 80 6 chr12 12312949 12313260 -131969229 - MLT1J2 LTR MaLR -2 448 115 260 336 0 19 chr12 12313646 12313750 -131968739 - MIR SINE MIR -3 259 158 803 198 188 102 chr12 12313828 12314339 -131968150 - MER34C LTR ERV1 0 585 31 2339 93 0 7 chr12 12314566 12314866 -131967623 + AluSg SINE Alu 1 298 -12 2033 127 48 0 chr12 12315081 12315373 -131967116 - AluJo SINE Alu -6 306 1 2443 74 3 0 chr12 12315574 12315873 -131966616 + AluSq SINE Alu 1 300 -13 2253 117 0 0 chr12 12316166 12316466 -131966023 - AluSx SINE Alu -12 300 1 350 246 29 87 chr12 12316839 12316890 -131965599 - MIR3 SINE MIR -7 201 149 950 243 84 63 chr12 12316890 12317223 -131965266 + MER102b DNA MER1_type 2 341 0 350 246 29 87 chr12 12317223 12317309 -131965180 - MIR3 SINE MIR -59 149 72 2344 82 0 3 chr12 12317743 12318034 -131964455 + AluSg SINE Alu 1 290 -20 861 199 141 100 chr12 12318276 12318744 -131963745 + MER34C LTR ERV1 35 521 -64 1493 158 119 75 chr12 12319071 12319500 -131962989 - LTR7 LTR ERV1 -2 448 1 1994 90 22 1 chr12 12319500 12319847 -131962642 - HERVH LTR ERV1 0 7713 7322 1491 116 19 0 chr12 12319845 12320061 -131962428 - HERVH LTR ERV1 -1894 5819 5600 * 4239 137 31 2 chr12 12320062 12320705 -131961784 - HERVH LTR ERV1 -2564 5149 4488 3519 97 4 4 chr12 12320707 12321201 -131961288 - HERVH LTR ERV1 -3720 3993 3500 848 162 20 0 chr12 12321200 12321348 -131961141 - HERVH LTR ERV1 -4423 3290 3140 * 16642 89 34 22 chr12 12321327 12324141 -131958348 - HERVH LTR ERV1 -4718 2995 1 1217 158 88 105 chr12 12324143 12324599 -131957890 - LTR7 LTR ERV1 -2 448 1 255 213 21 0 chr12 12324727 12324774 -131957715 + MER34C-int LTR ERV1 2482 2529 -4889 1071 265 76 57 chr12 12324806 12325411 -131957078 + MER34C-int LTR ERV1 355 929 -5402 278 174 0 0 chr12 12325564 12325610 -131956879 - MSTA LTR MaLR 0 428 383 1014 33 100 0 chr12 12325610 12325730 -131956759 + AluY SINE Alu 1 132 -179 2362 94 0 3 chr12 12325733 12326040 -131956449 + AluY SINE Alu 1 306 -5 2052 169 42 16 chr12 12326040 12326424 -131956065 - MSTA LTR MaLR -34 394 1 2019 202 92 73 chr12 12326424 12327278 -131955211 + MER34C-int LTR ERV1 904 2414 -2457 1333 226 81 68 chr12 12327292 12327770 -131954719 + MER34C-int LTR ERV1 1679 2170 -2766 1639 77 0 14 chr12 12327770 12327991 -131954498 + L1PA8 LINE L1 5952 6169 -3 1333 226 81 68 chr12 12327991 12328190 -131954299 + MER34C-int LTR ERV1 2170 2365 -2571 1686 149 78 24 chr12 12328202 12328498 -131953991 + AluJo SINE Alu 1 312 0 30 59 0 0 chr12 12328498 12328549 -131953940 + AT_rich Low_complexity Low_complexity 1 51 0 708 127 73 0 chr12 12328697 12328807 -131953682 + FRAM SINE Alu 23 140 -36 7027 172 44 72 chr12 12328829 12329104 -131953385 + MER34C-int LTR ERV1 2541 2822 -2114 2100 90 19 32 chr12 12329104 12329442 -131953047 - AluSq SINE Alu 0 313 1 183 42 0 0 chr12 12329449 12329473 -131953016 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 623 171 26 17 chr12 12329477 12329594 -131952895 - FLAM_C SINE Alu -15 118 1 7027 172 44 72 chr12 12329594 12329610 -131952879 + MER34C-int LTR ERV1 2831 2846 -2090 1868 159 3 31 chr12 12329610 12329931 -131952558 - AluJb SINE Alu 0 312 1 7027 172 44 72 chr12 12329931 12330744 -131951745 + MER34C-int LTR ERV1 2846 3680 -1256 1599 172 25 11 chr12 12330744 12331029 -131951460 - AluJo SINE Alu -23 289 1 7027 172 44 72 chr12 12331029 12331256 -131951233 + MER34C-int LTR ERV1 3680 3912 -1024 3860 101 34 2 chr12 12331256 12331793 -131950696 + MER41A LTR ERV1 1 554 0 7027 172 44 72 chr12 12331793 12332202 -131950287 + MER34C-int LTR ERV1 3912 4249 -687 377 182 100 36 chr12 12332203 12332313 -131950176 + LTR37A LTR ERV1 1 117 -309 797 195 63 155 chr12 12332342 12332796 -131949693 + MER34C-int LTR ERV1 4411 4905 -1426 299 114 0 0 chr12 12332796 12332840 -131949649 + L1M2 LINE L1 5513 5556 -741 797 195 63 155 chr12 12332840 12333049 -131949440 + MER34C-int LTR ERV1 4905 6330 -1 905 180 155 126 chr12 12333058 12333581 -131948908 + MER34C LTR ERV1 46 583 -2 6678 151 20 13 chr12 12333594 12333696 -131948793 + L1MA4 LINE L1 4128 4228 -2075 783 83 0 0 chr12 12333696 12333804 -131948685 + (TA)n Simple_repeat Simple_repeat 1 108 0 6678 151 20 13 chr12 12333804 12335357 -131947132 + L1MA4 LINE L1 4228 5795 -508 442 109 16 0 chr12 12335362 12335426 -131947063 - L1MA4A LINE L1 -334 5969 5905 1041 188 0 0 chr12 12335426 12335596 -131946893 - FRAM SINE Alu -6 170 1 2649 141 30 36 chr12 12335596 12335705 -131946784 + L1MA4 LINE L1 5803 5911 -389 1863 178 0 3 chr12 12335705 12335998 -131946491 + AluJo SINE Alu 5 296 -16 2439 75 0 3 chr12 12336000 12336307 -131946182 + AluY SINE Alu 1 306 -5 2649 141 30 36 chr12 12336307 12336691 -131945798 + L1MA4 LINE L1 5912 6296 -4 210 235 45 121 chr12 12337045 12337131 -131945358 + MIR3 SINE MIR 66 140 -68 702 214 55 33 chr12 12337131 12337238 -131945251 + MER5A DNA MER1_type 4 118 -71 2322 115 0 0 chr12 12337238 12337542 -131944947 + AluSx SINE Alu 1 304 -8 702 214 55 33 chr12 12337542 12337616 -131944873 + MER5A DNA MER1_type 118 189 0 210 235 45 121 chr12 12337616 12337661 -131944828 + MIR3 SINE MIR 140 187 -21 1990 162 3 0 chr12 12338230 12338532 -131943957 - AluJo SINE Alu -9 303 1 2556 54 0 0 chr12 12338546 12338844 -131943645 - AluY SINE Alu -13 298 1 418 262 153 82 chr12 12339489 12339672 -131942817 + MER91A DNA MER1_type 1 196 0 2126 107 3 43 chr12 12341207 12341533 -131940956 + AluSp SINE Alu 1 313 0 238 286 111 58 chr12 12341715 12341886 -131940603 + L3 LINE CR1 1366 1545 -32 1780 167 0 11 chr12 12342071 12342358 -131940131 - AluJo SINE Alu -23 289 6 360 225 170 7 chr12 12342599 12342823 -131939666 + MER46C DNA MER2_type 2 306 -32 2656 40 0 7 chr12 12343021 12343325 -131939164 + AluY SINE Alu 1 302 -9 455 368 55 18 chr12 12343491 12343763 -131938726 - MLT1I LTR MaLR -2 407 126 375 279 55 58 chr12 12343917 12344264 -131938225 + L1MC5 LINE L1 2148 2493 -3653 390 121 18 0 chr12 12344286 12344351 -131938138 + MER58 DNA MER1_type 2355 2420 0 592 236 117 48 chr12 12344379 12344794 -131937695 + L1MC5 LINE L1 2759 7085 -876 552 311 7 7 chr12 12344795 12344943 -131937546 - MLT2E LTR ERVL -145 483 336 625 289 28 38 chr12 12344964 12345158 -131937331 - MLT2E LTR ERVL -402 226 28 3399 264 64 66 chr12 12345159 12345292 -131937197 - ERVL-E LTR ERVL -13 5751 5619 3294 121 84 6 chr12 12345292 12345781 -131936708 + MER1A DNA MER1_type 1 527 0 3399 264 64 66 chr12 12345781 12346362 -131936127 - ERVL-E LTR ERVL -145 5619 5038 2371 52 3 85 chr12 12346362 12346692 -131935797 - AluY SINE Alu -8 303 1 3399 264 64 66 chr12 12346692 12347013 -131935476 - ERVL-E LTR ERVL -726 5038 4716 2262 110 3 0 chr12 12347013 12347312 -131935177 + AluSq SINE Alu 1 300 -13 3399 264 64 66 chr12 12347312 12347618 -131934871 - ERVL-E LTR ERVL -1048 4716 4411 3018 251 21 6 chr12 12347616 12348324 -131934165 - ERVL-E LTR ERVL -1955 3809 3091 * 682 288 31 3 chr12 12348321 12348675 -131933814 - ERVL-E LTR ERVL -2677 2977 2624 * 2625 276 78 33 chr12 12348685 12348837 -131933652 - ERVL-E LTR ERVL -3382 2382 2238 2100 137 36 39 chr12 12348837 12349201 -131933288 + THE1B LTR MaLR 1 363 -1 2625 276 78 33 chr12 12349201 12349740 -131932749 - ERVL-E LTR ERVL -3526 2238 1633 1570 144 0 12 chr12 12349740 12350003 -131932486 - AluSx SINE Alu 0 303 44 2625 276 78 33 chr12 12350003 12350273 -131932216 - ERVL-E LTR ERVL -4131 1633 1376 222 86 57 0 chr12 12350273 12350308 -131932181 + CT-rich Low_complexity Low_complexity 2 38 0 213 175 0 0 chr12 12350311 12350351 -131932138 + C-rich Low_complexity Low_complexity 5 44 0 716 259 0 6 chr12 12350390 12350556 -131931933 - FRAM SINE Alu -1 165 1 257 297 108 9 chr12 12350559 12350670 -131931819 - ERVL-E LTR ERVL -4377 1387 1266 246 32 0 0 chr12 12350748 12350779 -131931710 + (TG)n Simple_repeat Simple_repeat 1 31 0 2856 174 11 43 chr12 12350834 12351363 -131931126 + MLT2B1 LTR ERVL 1 512 -8 1382 249 36 10 chr12 12351763 12352217 -131930272 + MLT2F LTR ERVL 1 504 -159 216 0 0 0 chr12 12352268 12352292 -131930197 + (CA)n Simple_repeat Simple_repeat 2 25 0 2145 133 0 7 chr12 12352642 12352951 -131929538 - AluSg1 SINE Alu -1 308 2 349 286 75 28 chr12 12353063 12353318 -131929171 + L1MCc LINE L1 37 303 -6120 270 276 53 79 chr12 12353709 12353937 -131928552 + L1MCc LINE L1 1129 1350 -5073 2349 80 0 39 chr12 12353941 12354253 -131928236 + AluY SINE Alu 1 300 -11 1836 95 46 8 chr12 12354284 12354546 -131927943 + AluY SINE Alu 1 272 -39 1735 280 69 28 chr12 12354546 12354647 -131927842 + L1MCc LINE L1 1783 1878 -5244 457 176 176 0 chr12 12354647 12354755 -131927734 + FLAM_C SINE Alu 4 130 -3 1735 280 69 28 chr12 12354755 12355758 -131926731 + L1MCc LINE L1 1878 2932 -4190 4951 143 47 17 chr12 12355762 12356658 -131925831 + Cheshire DNA MER1_type 1498 2420 0 319 230 63 24 chr12 12356816 12356942 -131925547 - MIR SINE MIR 0 262 132 2319 61 44 7 chr12 12357054 12357351 -131925138 + AluY SINE Alu 1 308 -3 21 0 0 0 chr12 12357876 12357897 -131924592 + AT_rich Low_complexity Low_complexity 1 21 0 34 85 0 23 chr12 12358760 12358890 -131923599 + GC_rich Low_complexity Low_complexity 1 127 0 25 31 0 0 chr12 12359089 12359121 -131923368 + GC_rich Low_complexity Low_complexity 1 32 0 184 89 22 44 chr12 12359233 12359278 -131923211 + (CCCCG)n Simple_repeat Simple_repeat 3 46 0 240 59 0 0 chr12 12359786 12359820 -131922669 + (A)n Simple_repeat Simple_repeat 1 34 0 185 316 120 8 chr12 12362807 12362924 -131919565 + L2 LINE L2 3142 3271 -1 2205 107 3 3 chr12 12363126 12363417 -131919072 - AluSx SINE Alu -20 292 2 302 296 95 28 chr12 12363578 12363757 -131918732 - MIR3 SINE MIR 0 208 18 297 167 0 0 chr12 12365316 12365370 -131917119 + CT-rich Low_complexity Low_complexity 1 54 0 624 272 30 65 chr12 12365385 12365617 -131916872 - MIR SINE MIR -9 253 30 228 367 73 7 chr12 12366471 12366621 -131915868 - MIR3 SINE MIR -30 178 19 226 231 216 15 chr12 12367247 12367381 -131915108 + MIR SINE MIR 20 180 -82 315 290 12 99 chr12 12367462 12367537 -131914952 - MIR3 SINE MIR -24 184 129 2105 129 3 0 chr12 12367537 12367839 -131914650 - AluSx SINE Alu -9 303 1 315 290 12 99 chr12 12367839 12367925 -131914564 - MIR3 SINE MIR -79 129 37 1510 149 51 4 chr12 12369231 12369507 -131912982 + L1MA4 LINE L1 6009 6297 -3 2395 78 20 0 chr12 12369627 12369921 -131912568 + AluSx SINE Alu 1 300 -12 1724 154 7 18 chr12 12370317 12370597 -131911892 - AluJo SINE Alu -35 277 1 276 30 0 0 chr12 12373062 12373095 -131909394 + (TG)n Simple_repeat Simple_repeat 2 34 0 1612 151 70 15 chr12 12374328 12374599 -131907890 - AluSx SINE Alu -22 290 5 322 318 56 8 chr12 12374772 12374898 -131907591 + L2 LINE L2 3178 3309 -4 211 258 30 15 chr12 12376453 12376519 -131905970 + L2 LINE L2 3238 3304 -9 1799 168 13 10 chr12 12376833 12377001 -131905488 - AluJo SINE Alu -8 304 133 2256 116 0 0 chr12 12377001 12377304 -131905185 - AluSg1 SINE Alu -6 303 1 1799 168 13 10 chr12 12377304 12377438 -131905051 - AluJo SINE Alu -179 133 1 630 193 18 12 chr12 12378615 12378781 -131903708 + CT-rich Low_complexity Low_complexity 3 169 0 944 217 50 4 chr12 12380689 12380929 -131901560 + L1MA4 LINE L1 6048 6298 -2 328 245 21 21 chr12 12380986 12381080 -131901409 - MIR SINE MIR -81 127 34 423 0 0 0 chr12 12383920 12383967 -131898522 + (TG)n Simple_repeat Simple_repeat 2 48 0 1731 186 0 10 chr12 12384834 12385129 -131897360 + AluJo SINE Alu 1 292 -20 274 231 7 14 chr12 12385129 12385268 -131897221 + GA-rich Low_complexity Low_complexity 1 138 0 305 255 69 29 chr12 12387012 12387114 -131895375 + MIR SINE MIR 68 173 -89 2197 164 98 39 chr12 12387909 12388391 -131894098 - MLT2B1 LTR ERVL -10 510 1 202 164 75 45 chr12 12389289 12389356 -131893133 + MIR SINE MIR 77 145 -63 7118 46 17 26 chr12 12390863 12392265 -131890224 - L1PA7 LINE L1 0 6154 4767 1865 131 44 0 chr12 12392373 12392648 -131889841 - AluSx SINE Alu -25 287 1 307 255 53 0 chr12 12393363 12393457 -131889032 + HsTC2 DNA Tc2 1583 1681 -217 735 229 62 65 chr12 12393784 12394090 -131888399 - L1MC5 LINE L1 -44 7917 7613 183 301 119 34 chr12 12394160 12394396 -131888093 - L2 LINE L2 -108 3205 2950 189 107 0 0 chr12 12394627 12394655 -131887834 + (A)n Simple_repeat Simple_repeat 1 28 0 2025 103 39 4 chr12 12395841 12396122 -131886367 - AluSx SINE Alu -21 291 1 1903 156 7 7 chr12 12396186 12396488 -131886001 - AluSx SINE Alu -6 306 5 1521 111 12 83 chr12 12396530 12396782 -131885707 - AluSx SINE Alu -77 235 2 621 284 36 40 chr12 12397203 12397453 -131885036 - MIR SINE MIR 0 262 14 315 71 0 0 chr12 12398726 12398768 -131883721 + (TTTTA)n Simple_repeat Simple_repeat 1 42 0 937 196 0 0 chr12 12399749 12399902 -131882587 + FRAM SINE Alu 1 153 -23 2089 111 7 0 chr12 12399911 12400215 -131882274 + AluSx SINE Alu 1 306 0 1731 178 31 14 chr12 12400250 12400604 -131881885 - MLT1A1 LTR MaLR -5 360 1 484 291 56 80 chr12 12400842 12401144 -131881345 - L1ME3A LINE L1 -234 5936 5665 2857 124 7 19 chr12 12401313 12401739 -131880750 + MSTC LTR MaLR 3 423 -5 1806 146 44 0 chr12 12402074 12402349 -131880140 + AluJb SINE Alu 1 287 -25 28 0 0 0 chr12 12402352 12402380 -131880109 + AT_rich Low_complexity Low_complexity 1 28 0 311 265 83 38 chr12 12403484 12403616 -131878873 + MIR SINE MIR 7 144 -118 335 315 0 9 chr12 12405212 12405320 -131877169 - MIR3 SINE MIR -1 207 101 254 181 239 36 chr12 12405324 12405462 -131877027 - MER34B LTR ERV1 0 565 400 503 217 98 27 chr12 12405482 12405666 -131876823 + L2 LINE L2 3117 3313 0 697 248 6 0 chr12 12405672 12405833 -131876656 + MIR SINE MIR 88 249 -13 1968 138 10 7 chr12 12405841 12406145 -131876344 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr12 12406153 12406174 -131876315 + AT_rich Low_complexity Low_complexity 1 21 0 279 328 101 8 chr12 12406178 12406297 -131876192 + L2 LINE L2 3143 3272 0 241 292 33 42 chr12 12406765 12406885 -131875604 + MIR3 SINE MIR 87 205 -3 1909 199 80 3 chr12 12407563 12407925 -131874564 - MLT1E LTR MaLR -1 592 203 683 220 48 48 chr12 12408094 12408303 -131874186 - MIR SINE MIR -26 236 28 2505 121 69 48 chr12 12409467 12409547 -131872942 - Tigger2 DNA MER2_type 0 2718 2641 1534 150 40 0 chr12 12409547 12409800 -131872689 - L1PB4 LINE L1 -13 6143 5881 2505 121 69 48 chr12 12409800 12410156 -131872333 - Tigger2 DNA MER2_type -77 2641 2273 397 183 28 0 chr12 12410142 12410213 -131872276 - Tigger2 DNA MER2_type -2645 73 1 * 214 195 0 0 chr12 12410373 12410414 -131872075 + T-rich Low_complexity Low_complexity 1 41 0 1890 147 49 3 chr12 12410424 12410771 -131871718 - L1MB3 LINE L1 -7 6176 5814 1747 169 0 4 chr12 12412143 12412422 -131870067 + AluJb SINE Alu 17 294 -18 189 224 17 103 chr12 12413076 12413134 -131869355 + L3 LINE CR1 1512 1564 -13 388 283 20 53 chr12 12413386 12413538 -131868951 + L2 LINE L2 3163 3309 -4 226 274 0 0 chr12 12413589 12413640 -131868849 + GA-rich Low_complexity Low_complexity 2 52 0 2164 109 17 7 chr12 12413655 12413949 -131868540 - AluSx SINE Alu -15 297 1 24 32 0 0 chr12 12413962 12413993 -131868496 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chr12 12414079 12414101 -131868388 + (TG)n Simple_repeat Simple_repeat 1 22 0 1135 197 67 47 chr12 12414143 12414442 -131868047 + L1MA9 LINE L1 5793 6097 -215 317 230 122 54 chr12 12415528 12415676 -131866813 - MIR SINE MIR -56 206 49 234 150 0 0 chr12 12418634 12418674 -131863815 + (TCTCC)n Simple_repeat Simple_repeat 4 43 0 752 199 8 0 chr12 12418674 12418805 -131863684 - FLAM_A SINE Alu -1 132 1 1873 173 53 60 chr12 12418879 12419295 -131863194 + MLT2D LTR ERVL 2 414 0 386 301 38 2 chr12 12419685 12419875 -131862614 - MIR SINE MIR -13 249 17 183 344 31 0 chr12 12421680 12421744 -131860745 + MIR SINE MIR 34 99 -109 1587 162 196 9 chr12 12421803 12422149 -131860340 - MLT2D LTR ERVL 0 414 4 693 279 47 39 chr12 12422777 12423031 -131859458 + L2 LINE L2 2882 3137 -176 692 204 52 17 chr12 12423072 12423244 -131859245 + MER5B DNA MER1_type 1 178 0 427 242 50 0 chr12 12423387 12423486 -131859003 + L2 LINE L2 3209 3312 -1 198 0 0 0 chr12 12423959 12423981 -131858508 + (A)n Simple_repeat Simple_repeat 1 22 0 205 345 24 0 chr12 12424575 12424659 -131857830 - MIR3 SINE MIR -24 184 99 517 261 106 14 chr12 12424709 12424918 -131857571 - MIR SINE MIR -33 229 4 2190 61 104 0 chr12 12425387 12425666 -131856823 + AluY SINE Alu 1 308 -3 206 325 0 0 chr12 12425961 12426038 -131856451 + MIR3 SINE MIR 125 201 -7 754 207 5 69 chr12 12427671 12427789 -131854700 - MER45A DNA AcHobo -1403 178 75 1329 149 146 38 chr12 12427789 12428050 -131854439 + AluJb SINE Alu 1 289 -23 754 207 5 69 chr12 12428050 12428119 -131854370 - MER45A DNA AcHobo -1506 75 3 353 277 71 115 chr12 12429617 12429766 -131852723 + MIR SINE MIR 15 150 -112 5185 129 56 16 chr12 12429766 12431019 -131851470 + L1PA16 LINE L1 4873 6166 0 353 277 71 115 chr12 12431019 12431122 -131851367 + MIR SINE MIR 150 256 -6 651 200 133 0 chr12 12432146 12432311 -131850178 - MER5A DNA MER1_type 0 189 3 752 247 54 31 chr12 12432332 12432555 -131849934 + MIR SINE MIR 28 255 -7 313 264 11 0 chr12 12432589 12432676 -131849813 - MIR SINE MIR -1 261 174 180 352 0 0 chr12 12432883 12432937 -131849552 + L2 LINE L2 3215 3268 -4 201 327 10 59 chr12 12433812 12433913 -131848576 - L2 LINE L2 -23 3290 3195 2758 123 14 7 chr12 12434881 12435310 -131847179 + MSTB1 LTR MaLR 1 432 0 1826 152 28 0 chr12 12435803 12436086 -131846403 + AluJo SINE Alu 1 291 -21 383 270 86 26 chr12 12436205 12436357 -131846132 - MIR SINE MIR -71 191 31 2321 100 0 3 chr12 12437118 12437428 -131845061 - AluSx SINE Alu -3 309 1 2108 133 21 6 chr12 12437602 12437933 -131844556 + MER1B DNA MER1_type 1 336 -1 565 209 27 9 chr12 12441204 12441314 -131841175 - MER81 DNA DNA 0 114 3 272 250 148 0 chr12 12441638 12441726 -131840763 + MIR3 SINE MIR 84 184 -24 213 309 106 32 chr12 12442259 12442382 -131840107 + MIR SINE MIR 29 160 -102 2488 85 0 0 chr12 12442433 12442740 -131839749 + AluY SINE Alu 1 307 -4 1288 152 0 0 chr12 12443634 12443818 -131838671 + AluJo SINE Alu 3 186 -126 246 128 0 0 chr12 12443824 12443863 -131838626 + (A)n Simple_repeat Simple_repeat 1 39 0 711 231 67 29 chr12 12443938 12444176 -131838313 - MIR SINE MIR -14 248 2 234 0 0 0 chr12 12444394 12444420 -131838069 + (T)n Simple_repeat Simple_repeat 1 26 0 271 303 112 39 chr12 12444819 12444892 -131837597 + MIR SINE MIR 10 76 -186 189 0 0 0 chr12 12444892 12444913 -131837576 + (ATG)n Simple_repeat Simple_repeat 2 22 0 2342 81 7 3 chr12 12444913 12445208 -131837281 - AluSq SINE Alu -17 296 1 271 303 112 39 chr12 12445208 12445367 -131837122 + MIR SINE MIR 75 256 -6 251 327 39 29 chr12 12445386 12445490 -131836999 + L2 LINE L2 3132 3236 -36 322 297 83 35 chr12 12445531 12445676 -131836813 - L2 LINE L2 -2 3270 3119 393 294 46 0 chr12 12446206 12446315 -131836174 - L2 LINE L2 0 3313 3200 437 140 8 0 chr12 12447482 12447603 -131834886 + CT-rich Low_complexity Low_complexity 1 121 0 1768 131 47 24 chr12 12447605 12447903 -131834586 - AluJb SINE Alu -2 310 6 250 209 76 57 chr12 12448666 12448771 -131833718 + Charlie5 DNA MER1_type 3 109 -2503 1740 186 41 3 chr12 12448780 12449145 -131833344 + Charlie5 DNA MER1_type 2244 2622 0 21 0 0 0 chr12 12449997 12450018 -131832471 + AT_rich Low_complexity Low_complexity 1 21 0 462 208 146 14 chr12 12451153 12451297 -131831192 - MER5B DNA MER1_type 0 178 16 2219 135 0 3 chr12 12452095 12452407 -131830082 - AluJb SINE Alu -1 311 1 251 316 198 24 chr12 12454519 12454858 -131827631 - L3 LINE CR1 -1 1576 1179 273 247 55 0 chr12 12455657 12455730 -131826759 + MIR SINE MIR 120 196 -66 180 0 0 0 chr12 12456090 12456110 -131826379 + (T)n Simple_repeat Simple_repeat 1 20 0 510 17 0 0 chr12 12458582 12458641 -131823848 + (CA)n Simple_repeat Simple_repeat 1 59 0 234 62 0 0 chr12 12460083 12460115 -131822374 + (T)n Simple_repeat Simple_repeat 1 32 0 510 258 0 39 chr12 12463467 12463622 -131818867 - L2 LINE L2 0 3313 3165 210 331 181 19 chr12 12463785 12463945 -131818544 + MIR3 SINE MIR 16 201 -7 654 287 44 28 chr12 12464093 12464344 -131818145 - MIR SINE MIR -1 261 7 204 40 0 0 chr12 12464374 12464399 -131818090 + (TGGA)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr12 12466757 12466779 -131815710 + AT_rich Low_complexity Low_complexity 1 22 0 249 296 82 7 chr12 12466790 12466925 -131815564 - MIR SINE MIR -52 210 66 22 35 0 0 chr12 12468450 12468479 -131814010 + AT_rich Low_complexity Low_complexity 1 29 0 381 223 0 0 chr12 12470159 12470253 -131812236 + (TATATG)n Simple_repeat Simple_repeat 1 94 0 273 274 105 0 chr12 12470306 12470401 -131812088 - MIR SINE MIR -139 123 19 277 363 44 19 chr12 12470960 12471120 -131811369 + MIR3 SINE MIR 21 184 -24 529 249 113 0 chr12 12474064 12474241 -131808248 - MIR SINE MIR 0 262 66 502 258 54 36 chr12 12476408 12476575 -131805914 + MIR SINE MIR 20 189 -73 487 311 25 20 chr12 12476789 12476985 -131805504 + MIR3 SINE MIR 2 198 -10 594 269 73 27 chr12 12477591 12477810 -131804679 - MIR SINE MIR -14 248 20 1039 144 0 13 chr12 12480053 12480206 -131802283 + FRAM SINE Alu 14 164 -12 243 263 162 10 chr12 12481138 12481237 -131801252 + MIR SINE MIR 16 129 -79 2396 95 3 0 chr12 12482199 12482504 -131799985 + AluY SINE Alu 1 306 -5 36 0 0 0 chr12 12482595 12482631 -131799858 + AT_rich Low_complexity Low_complexity 1 36 0 206 294 98 0 chr12 12484637 12484729 -131797760 - L2 LINE L2 -4 3268 3168 414 264 24 32 chr12 12484775 12484900 -131797589 - L2 LINE L2 -9 3263 3140 773 173 0 0 chr12 12485699 12485832 -131796657 - FLAM_C SINE Alu 0 133 1 294 330 18 0 chr12 12486006 12486115 -131796374 + L1ME4a LINE L1 5554 5664 -457 272 265 109 0 chr12 12486177 12486244 -131796245 + L1ME4a LINE L1 5765 5823 -298 2554 62 0 7 chr12 12486244 12486552 -131795937 + AluY SINE Alu 1 306 -5 272 265 109 0 chr12 12486552 12486631 -131795858 + L1ME4a LINE L1 5823 5927 -194 231 246 68 25 chr12 12486638 12486756 -131795733 + L1ME4a LINE L1 5961 6083 -38 199 333 103 16 chr12 12487202 12487328 -131795161 + L2 LINE L2 3136 3272 0 381 312 22 0 chr12 12487424 12487562 -131794927 + MIR SINE MIR 110 250 -12 236 222 0 100 chr12 12489699 12489789 -131792700 - LTR67 LTR ERVL -13 544 464 394 347 89 8 chr12 12490480 12490728 -131791761 - L3 LINE CR1 -12 1565 1298 457 291 171 27 chr12 12490942 12491234 -131791255 - L3 LINE CR1 -668 909 576 421 314 169 39 chr12 12492414 12493055 -131789434 - L2 LINE L2 -1116 2198 1475 266 44 0 44 chr12 12493116 12493161 -131789328 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 274 250 15 0 chr12 12493369 12493437 -131789052 - L2 LINE L2 -3 3269 3201 2140 70 9 98 chr12 12493437 12493764 -131788725 + AluSx SINE Alu 1 298 -14 583 268 79 77 chr12 12493782 12493997 -131788492 - L2 LINE L2 -312 3001 2785 1594 167 37 40 chr12 12493997 12494296 -131788193 - AluJo SINE Alu -14 298 1 583 268 79 77 chr12 12494296 12494504 -131787985 - L2 LINE L2 -528 2785 2579 * 1119 239 115 19 chr12 12494499 12494863 -131787626 + L2 LINE L2 2911 3309 -4 207 306 0 0 chr12 12495970 12496032 -131786457 + MIR3 SINE MIR 143 204 -4 191 185 0 111 chr12 12496265 12496319 -131786170 - MIR3 SINE MIR -17 191 144 1137 198 71 14 chr12 12496527 12496844 -131785645 + MER33 DNA MER1_type 1 324 0 319 279 23 0 chr12 12496888 12496974 -131785515 - MIR SINE MIR -116 146 59 3436 230 200 68 chr12 12497865 12498310 -131784179 - HAL1 LINE L1 -31 2476 2091 2074 99 0 4 chr12 12498310 12498611 -131783878 - AluSg SINE Alu 0 311 12 3436 230 200 68 chr12 12498611 12499971 -131782518 - HAL1 LINE L1 -416 2091 338 2205 103 13 10 chr12 12499971 12500271 -131782218 - AluSx SINE Alu -11 301 1 3436 230 200 68 chr12 12500271 12500619 -131781870 - HAL1 LINE L1 -2169 338 37 210 245 0 0 chr12 12501108 12501161 -131781328 + MER5B DNA MER1_type 2 54 -124 2442 88 0 0 chr12 12501700 12501995 -131780494 + AluSg SINE Alu 1 295 -15 21 0 0 0 chr12 12502363 12502384 -131780105 + AT_rich Low_complexity Low_complexity 1 21 0 575 229 28 0 chr12 12502457 12502601 -131779888 - MIR SINE MIR 0 262 115 200 226 38 113 chr12 12502832 12502938 -131779551 - MIR SINE MIR -140 122 25 22 0 0 0 chr12 12504478 12504500 -131777989 + AT_rich Low_complexity Low_complexity 1 22 0 619 260 62 10 chr12 12505034 12505226 -131777263 + MIR SINE MIR 53 254 -8 288 290 161 0 chr12 12505699 12505792 -131776697 - MIR SINE MIR -71 137 30 1122 162 0 57 chr12 12506053 12506281 -131776208 - AluJo SINE Alu 0 312 98 297 417 40 0 chr12 12507329 12507480 -131775009 - L2 LINE L2 -9 3263 3107 1020 178 51 14 chr12 12509056 12509270 -131773219 - AluJo SINE Alu -4 308 87 2105 156 92 21 chr12 12509567 12509990 -131772499 - L1MA8 LINE L1 -5 6286 5834 623 136 7 116 chr12 12510079 12510226 -131772263 + FLAM_A SINE Alu 1 131 -2 203 178 22 0 chr12 12513200 12513245 -131769244 + (CAT)n Simple_repeat Simple_repeat 2 47 0 412 273 83 0 chr12 12513380 12513501 -131768988 - L2 LINE L2 -4 3309 3179 924 296 25 15 chr12 12513537 12514014 -131768475 + L2 LINE L2 2670 3149 -164 738 245 53 67 chr12 12514446 12514728 -131767761 - HAL1 LINE L1 -2193 314 37 241 370 9 0 chr12 12514837 12514945 -131767544 - L2 LINE L2 -245 3027 2919 1468 167 84 57 chr12 12517654 12517989 -131764500 - MER2 DNA MER2_type 0 344 1 1950 145 0 7 chr12 12518173 12518470 -131764019 + AluJb SINE Alu 1 295 -17 240 342 0 26 chr12 12518520 12518675 -131763814 + GA-rich Low_complexity Low_complexity 3 153 0 2307 117 0 0 chr12 12519105 12519412 -131763077 - AluY SINE Alu -4 307 1 334 333 48 12 chr12 12520093 12520261 -131762228 - L3 LINE CR1 -16 1561 1388 432 249 193 5 chr12 12520979 12521176 -131761313 - MIR SINE MIR -6 256 23 195 129 0 0 chr12 12522875 12522906 -131759583 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 300 298 72 82 chr12 12524448 12524637 -131757852 - MIR SINE MIR -55 207 22 326 352 34 34 chr12 12524776 12524952 -131757537 + MIR SINE MIR 37 212 -50 231 311 199 0 chr12 12525356 12525517 -131756972 - L2 LINE L2 -347 2967 2775 2145 86 7 7 chr12 12525536 12525838 -131756651 - AluY SINE Alu -9 302 1 580 313 85 22 chr12 12526328 12526552 -131755937 + MIR SINE MIR 8 245 -17 197 305 106 40 chr12 12527211 12527437 -131755052 - L2 LINE L2 -224 3048 2808 1915 124 0 44 chr12 12527528 12527843 -131754646 + AluSx SINE Alu 1 301 -11 187 319 124 12 chr12 12528361 12528530 -131753959 + L2 LINE L2 1688 1875 -1439 1184 334 92 15 chr12 12528694 12529284 -131753205 + L2 LINE L2 2175 2809 -505 959 259 19 8 chr12 12529294 12529553 -131752936 - MIR SINE MIR 0 262 1 2132 245 72 44 chr12 12529575 12530374 -131752115 - L2 LINE L2 -2 3311 2455 2226 99 0 13 chr12 12530374 12530688 -131751801 + AluY SINE Alu 1 310 -1 2132 245 72 44 chr12 12530688 12530847 -131751642 - L2 LINE L2 -858 2455 2302 1459 155 23 59 chr12 12530848 12531152 -131751337 + AluJo SINE Alu 1 293 -19 188 330 47 19 chr12 12531212 12531318 -131751171 + L2 LINE L2 2862 2970 -302 1945 129 3 3 chr12 12532755 12533058 -131749431 - AluSg SINE Alu -7 303 1 2197 91 24 0 chr12 12533790 12534087 -131748402 + AluSx SINE Alu 1 304 -8 305 268 98 58 chr12 12534456 12534680 -131747809 + L1 LINE L1 3068 3300 -2846 640 211 114 57 chr12 12534761 12534988 -131747501 - MLT1D LTR MaLR -258 247 8 193 216 0 0 chr12 12534995 12535032 -131747457 - MIR SINE MIR -173 89 53 1729 169 13 7 chr12 12535127 12535429 -131747060 - AluJo SINE Alu -8 304 1 378 0 0 0 chr12 12536364 12536406 -131746083 + (CA)n Simple_repeat Simple_repeat 1 42 0 691 180 29 35 chr12 12538107 12538279 -131744210 - MER96B DNA MER1_type? -246 171 1 705 289 72 8 chr12 12538565 12538800 -131743689 - MIR SINE MIR -8 254 5 224 200 44 0 chr12 12539693 12539738 -131742751 + MIR SINE MIR 85 131 -77 294 98 0 0 chr12 12540483 12540534 -131741955 + (TG)n Simple_repeat Simple_repeat 2 52 0 2026 120 3 0 chr12 12540534 12540818 -131741671 - AluSx SINE Alu -27 285 1 392 283 114 12 chr12 12540827 12540993 -131741496 - L1ME4a LINE L1 -4 6117 5935 461 270 183 18 chr12 12541001 12541275 -131741214 - L1ME4a LINE L1 -265 5856 5538 741 366 115 35 chr12 12541621 12542422 -131740067 + L3 LINE CR1 2 866 -711 185 367 0 0 chr12 12542468 12542528 -131739961 - MIR SINE MIR -3 259 200 180 273 0 0 chr12 12542557 12542601 -131739888 - L3 LINE CR1 -863 714 671 412 225 0 0 chr12 12542632 12542712 -131739777 - MIR SINE MIR -113 149 70 954 230 48 44 chr12 12542835 12543083 -131739406 + MIR SINE MIR 12 260 -2 298 271 246 0 chr12 12543097 12543219 -131739270 + MIR SINE MIR 2 153 -109 283 341 260 0 chr12 12543271 12543479 -131739010 + L3 LINE CR1 993 1254 -323 220 329 0 12 chr12 12543783 12543865 -131738624 + MIR SINE MIR 132 212 -50 591 258 25 21 chr12 12544107 12544295 -131738194 - MIR3 SINE MIR -5 203 12 997 176 96 59 chr12 12545116 12545355 -131737134 + MIR SINE MIR 3 250 -12 2013 184 73 14 chr12 12547111 12547605 -131734884 - Charlie1b DNA MER1_type 0 523 1 1860 162 0 0 chr12 12548892 12549189 -131733300 + AluJb SINE Alu 1 297 -15 2715 13 0 0 chr12 12551094 12551402 -131731087 + AluYa5 SINE Alu 1 308 -3 359 282 39 39 chr12 12551725 12551881 -131730608 + L2 LINE L2 3152 3307 -6 296 379 63 19 chr12 12551906 12552112 -131730377 - L2 LINE L2 -527 2787 2573 199 255 248 33 chr12 12552143 12552296 -131730193 - L2 LINE L2 -902 2412 2227 253 287 30 10 chr12 12552693 12552794 -131729695 + MIR3 SINE MIR 87 189 -19 2226 99 3 0 chr12 12554103 12554406 -131728083 - AluSc SINE Alu -5 304 1 2218 101 0 3 chr12 12554988 12555296 -131727193 + AluSg SINE Alu 1 307 -3 256 338 43 7 chr12 12555766 12556006 -131726483 + L1ME4a LINE L1 5550 5802 -344 1163 71 0 0 chr12 12556143 12556298 -131726191 - AluY SINE Alu -2 309 155 1008 301 203 19 chr12 12556328 12557199 -131725290 - L2 LINE L2 -660 2654 1624 549 310 29 73 chr12 12557406 12557651 -131724838 - MIR SINE MIR -9 253 20 350 182 234 0 chr12 12557979 12558056 -131724433 - MER69 DNA AcHobo -1131 95 1 21 36 0 0 chr12 12558336 12558364 -131724125 + AT_rich Low_complexity Low_complexity 1 28 0 1772 146 7 4 chr12 12558389 12558692 -131723797 - AluJb SINE Alu 0 304 1 565 326 113 34 chr12 12558796 12559124 -131723365 + L3 LINE CR1 1212 1565 -12 219 69 0 0 chr12 12559827 12559856 -131722633 + (TGG)n Simple_repeat Simple_repeat 3 31 0 572 345 0 0 chr12 12559862 12560033 -131722456 - MIR SINE MIR -3 259 89 327 284 204 25 chr12 12560215 12560377 -131722112 - MIR SINE MIR -30 232 42 306 250 92 50 chr12 12562091 12562185 -131720304 + L1ME4a LINE L1 5993 6095 -26 1821 158 0 0 chr12 12562185 12562476 -131720013 + AluJb SINE Alu 1 291 -21 306 250 92 50 chr12 12562476 12562501 -131719988 + L1ME4a LINE L1 6095 6117 -4 221 320 97 0 chr12 12562562 12562665 -131719824 + L2 LINE L2 3155 3267 -5 217 267 0 0 chr12 12562942 12562987 -131719502 - L2 LINE L2 -5 3308 3264 3691 109 11 9 chr12 12563165 12563689 -131718800 - MER1A DNA MER1_type 0 527 3 2263 54 0 34 chr12 12564294 12564590 -131717899 + AluY SINE Alu 1 286 -25 285 146 0 0 chr12 12566231 12566279 -131716210 + (TAGG)n Simple_repeat Simple_repeat 1 48 0 313 259 0 0 chr12 12566827 12566912 -131715577 + MER94 DNA DNA 1 85 -49 392 269 94 20 chr12 12567010 12567159 -131715330 + MIR3 SINE MIR 33 192 -16 32 0 0 0 chr12 12567667 12567699 -131714790 + AT_rich Low_complexity Low_complexity 1 32 0 2562 55 0 0 chr12 12568404 12568715 -131713774 - AluY SINE Alu 0 311 1 926 253 66 12 chr12 12568737 12568978 -131713511 - MIR SINE MIR 0 262 9 567 276 69 0 chr12 12569660 12569805 -131712684 + MIR SINE MIR 39 193 -69 403 109 0 0 chr12 12569805 12569869 -131712620 + Alu SINE Alu 248 311 0 211 210 210 0 chr12 12569869 12569931 -131712558 + MIR SINE MIR 187 261 -1 495 110 99 0 chr12 12569988 12570079 -131712410 - L1MB2 LINE L1 -2 6169 6070 2475 128 73 14 chr12 12571656 12572095 -131710394 - MLT1C LTR MaLR 0 467 3 1081 213 84 60 chr12 12574054 12574243 -131708246 - L1MC5 LINE L1 -51 7910 7727 2474 57 0 0 chr12 12574243 12574543 -131707946 + AluY SINE Alu 1 300 -11 1081 213 84 60 chr12 12574543 12574771 -131707718 - L1MC5 LINE L1 -234 7727 7483 25 0 0 0 chr12 12574850 12574875 -131707614 + AT_rich Low_complexity Low_complexity 1 25 0 217 134 0 82 chr12 12574884 12575018 -131707471 + (TA)n Simple_repeat Simple_repeat 1 123 0 1358 242 103 49 chr12 12575026 12575839 -131706650 - L1MEc LINE L1 -4761 1495 659 440 308 71 16 chr12 12576311 12576493 -131705996 - L1MEc LINE L1 -5860 345 154 492 285 30 30 chr12 12576504 12576704 -131705785 - L1MC4a LINE L1 -1867 5941 5742 535 274 51 13 chr12 12577520 12577677 -131704812 + MIR SINE MIR 19 181 -81 1250 136 0 0 chr12 12577699 12577875 -131704614 - AluSg/x SINE Alu 0 312 137 207 228 0 18 chr12 12577919 12577976 -131704513 + (TTA)n Simple_repeat Simple_repeat 1 56 0 2500 70 0 0 chr12 12578228 12578530 -131703959 + AluY SINE Alu 1 302 -9 316 339 15 0 chr12 12579947 12580077 -131702412 - L2 LINE L2 -3 3310 3179 188 200 80 20 chr12 12580140 12580190 -131702299 - MIR SINE MIR -7 255 203 2293 72 31 7 chr12 12580472 12580764 -131701725 - AluY SINE Alu -12 299 1 351 265 22 81 chr12 12580940 12581125 -131701364 + L1MC5 LINE L1 7744 7917 -44 216 163 20 0 chr12 12581463 12581512 -131700977 - MIR SINE MIR -77 131 82 2214 113 13 7 chr12 12581769 12582070 -131700419 - AluSx SINE Alu -9 303 1 254 231 0 0 chr12 12582464 12582516 -131699973 + MIR3 SINE MIR 144 195 -13 194 318 80 40 chr12 12583143 12583294 -131699195 - L2 LINE L2 -213 3059 2903 2193 124 0 3 chr12 12583368 12583666 -131698823 + AluSx SINE Alu 1 297 -15 231 174 0 0 chr12 12583667 12583713 -131698776 + LTR66 LTR ERVL 394 439 -171 377 307 0 11 chr12 12583713 12583889 -131698600 + (TATATG)n Simple_repeat Simple_repeat 2 175 0 304 315 0 0 chr12 12583900 12583989 -131698500 + L1MC4 LINE L1 6615 6703 -1339 2076 17 12 0 chr12 12584067 12584308 -131698181 + L1PA4 LINE L1 5912 6155 0 1046 212 9 28 chr12 12585011 12585228 -131697261 + MER58A DNA MER1_type 12 224 0 248 203 62 16 chr12 12585534 12585598 -131696891 - L2 LINE L2 0 3313 3247 22 0 0 0 chr12 12586554 12586576 -131695913 + AT_rich Low_complexity Low_complexity 1 22 0 193 284 74 0 chr12 12587019 12587114 -131695375 + MIR SINE MIR 105 206 -56 875 171 82 0 chr12 12588141 12588311 -131694178 - MER20 DNA MER1_type 0 219 36 237 65 0 0 chr12 12589284 12589315 -131693174 + (A)n Simple_repeat Simple_repeat 1 31 0 1538 188 4 22 chr12 12590221 12590497 -131691992 - AluJo SINE Alu -41 271 1 1539 191 64 9 chr12 12590636 12590981 -131691508 - MLT1A1 LTR MaLR -1 364 1 477 326 62 4 chr12 12591654 12591881 -131690608 + MIR SINE MIR 23 262 0 306 330 31 0 chr12 12591916 12592013 -131690476 - MIR SINE MIR -84 178 79 211 171 0 24 chr12 12592195 12592236 -131690253 + MIR SINE MIR 85 124 -84 2445 96 0 3 chr12 12592537 12592850 -131689639 - AluSx SINE Alu 0 312 1 245 258 32 0 chr12 12593527 12593589 -131688900 + MIR3 SINE MIR 101 164 -44 841 239 35 31 chr12 12595651 12595906 -131686583 - MER112 DNA MER1_type 0 256 1 369 350 9 22 chr12 12596468 12596691 -131685798 + L2 LINE L2 2137 2356 -958 2586 75 0 0 chr12 12596722 12597029 -131685460 + AluSc SINE Alu 1 307 -2 995 104 6 49 chr12 12597632 12597648 -131684841 - AluJo/FRAM SINE Alu 0 312 297 1843 170 3 25 chr12 12597648 12597965 -131684524 - AluSx SINE Alu -2 310 1 995 104 6 49 chr12 12597965 12598111 -131684378 - AluJo/FRAM SINE Alu -15 297 157 398 117 0 17 chr12 12598127 12598187 -131684302 - MER46B DNA MER2_type 0 236 178 189 0 0 0 chr12 12599387 12599408 -131683081 + (T)n Simple_repeat Simple_repeat 1 21 0 1682 198 10 10 chr12 12599692 12599990 -131682499 - AluJo SINE Alu -14 298 1 216 0 0 0 chr12 12600621 12600645 -131681844 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 25 31 0 0 chr12 12600711 12600743 -131681746 + AT_rich Low_complexity Low_complexity 1 32 0 216 0 0 0 chr12 12601478 12601502 -131680987 + (T)n Simple_repeat Simple_repeat 1 24 0 1408 156 27 136 chr12 12602800 12603205 -131679284 + MER46B DNA MER2_type 1 236 0 264 327 30 10 chr12 12603975 12604076 -131678413 - MIR SINE MIR -57 151 49 207 69 0 0 chr12 12604536 12604565 -131677924 + (A)n Simple_repeat Simple_repeat 1 29 0 27 0 0 0 chr12 12604631 12604658 -131677831 + AT_rich Low_complexity Low_complexity 1 27 0 753 174 49 0 chr12 12605514 12605658 -131676831 + MER5A DNA MER1_type 39 189 0 213 188 58 29 chr12 12606037 12606106 -131676383 + L3 LINE CR1 1435 1505 -72 316 195 12 37 chr12 12606252 12606271 -131676218 - MER5A DNA MER1_type -96 93 75 2524 77 3 0 chr12 12606271 12606581 -131675908 - AluY SINE Alu 0 311 1 316 195 12 37 chr12 12606581 12606643 -131675846 - MER5A DNA MER1_type -114 75 14 188 301 159 18 chr12 12607490 12607603 -131674886 + L2 LINE L2 3184 3312 -1 2262 156 63 20 chr12 12607607 12608233 -131674256 + L1ME1 LINE L1 5054 5700 -466 1913 149 10 10 chr12 12608233 12608529 -131673960 - AluJo SINE Alu -16 296 1 2262 156 63 20 chr12 12608529 12608550 -131673939 + L1ME1 LINE L1 5700 5719 -447 1690 170 21 3 chr12 12608551 12608833 -131673656 + AluJb SINE Alu 17 303 -9 1213 97 6 0 chr12 12608834 12608999 -131673490 + AluSg/x SINE Alu 137 302 -10 708 191 0 7 chr12 12609002 12609138 -131673351 + L1ME1 LINE L1 5730 5864 -302 904 259 23 0 chr12 12609139 12609402 -131673087 + L1MB7 LINE L1 5916 6184 0 2036 141 3 0 chr12 12610126 12610423 -131672066 + AluSg SINE Alu 1 298 -12 726 233 5 34 chr12 12611175 12611381 -131671108 + MIR SINE MIR 32 231 -31 211 246 16 0 chr12 12611571 12611632 -131670857 - MIR SINE MIR -56 152 91 2319 107 0 0 chr12 12612124 12612423 -131670066 - AluSq SINE Alu -14 299 1 261 291 13 13 chr12 12613966 12614045 -131668444 + MIR SINE MIR 20 98 -164 2109 127 6 13 chr12 12614324 12614638 -131667851 + AluJo SINE Alu 1 312 0 320 319 42 14 chr12 12614777 12614921 -131667568 - MIR SINE MIR -80 182 35 327 224 224 0 chr12 12615837 12615953 -131666536 - MIR3 SINE MIR -5 203 62 256 273 31 0 chr12 12616723 12616841 -131665648 + L1MEc LINE L1 1939 2020 -4195 1299 187 23 21 chr12 12616858 12617249 -131665240 + L1MEc LINE L1 2058 2457 -3758 322 313 135 60 chr12 12617560 12617723 -131664766 - L2 LINE L2 -4 3309 3160 1824 204 0 3 chr12 12617723 12618071 -131664418 - L1PB4 LINE L1 -3 6153 5807 322 313 135 60 chr12 12618071 12618323 -131664166 - L2 LINE L2 -153 3160 2863 45221 37 1 3 chr12 12618404 12624571 -131657918 + L1PA4 LINE L1 2 6152 -3 2344 75 0 10 chr12 12625769 12626062 -131656427 + AluY SINE Alu 1 290 -21 1750 173 0 23 chr12 12626321 12626621 -131655868 - AluJb SINE Alu -15 297 5 21 0 0 0 chr12 12626626 12626647 -131655842 + AT_rich Low_complexity Low_complexity 1 21 0 2508 68 3 0 chr12 12628081 12628389 -131654100 + AluY SINE Alu 1 309 -2 1268 114 0 0 chr12 12628390 12628556 -131653933 + AluSg/x SINE Alu 128 293 -17 6421 162 26 50 chr12 12628966 12630678 -131651811 - L1MC1 LINE L1 -6 6327 4677 2253 98 0 0 chr12 12632817 12633103 -131649386 + AluSx SINE Alu 15 300 -12 474 291 115 36 chr12 12633362 12634138 -131648351 + L1MC4a LINE L1 4238 5074 -1072 251 271 29 14 chr12 12634305 12634375 -131648114 + MLT1J LTR MaLR 110 180 -331 289 241 44 84 chr12 12634484 12634670 -131647819 + MLT1J LTR MaLR 362 511 0 280 256 23 0 chr12 12634817 12634903 -131647586 + L1MC4a LINE L1 5254 5341 -2467 4214 181 5 50 chr12 12634912 12635401 -131647088 + L1 LINE L1 4125 4584 -1562 241 35 0 0 chr12 12635401 12635430 -131647059 - U6 snRNA snRNA -77 30 2 4214 181 5 50 chr12 12635430 12635841 -131646648 + L1 LINE L1 4584 5012 -1134 604 237 113 66 chr12 12635848 12636122 -131646367 + L1MC4a LINE L1 5345 5631 -2177 365 279 109 18 chr12 12636138 12636303 -131646186 + L1MC4a LINE L1 5722 5901 -1907 662 56 0 0 chr12 12636343 12636432 -131646057 + Alu SINE Alu 221 309 0 303 28 0 0 chr12 12636442 12636478 -131646011 + (TA)n Simple_repeat Simple_repeat 1 36 0 2225 213 48 10 chr12 12636578 12637081 -131645408 - MLT1G LTR MaLR 0 590 69 242 290 7 43 chr12 12637638 12637776 -131644713 + CT-rich Low_complexity Low_complexity 2 134 0 2132 168 24 40 chr12 12637944 12638397 -131644092 - L1MB3 LINE L1 0 6183 5738 356 267 29 9 chr12 12639098 12639203 -131643286 + HAL1 LINE L1 764 870 -1637 * 365 304 64 12 chr12 12639199 12639370 -131643119 + HAL1 LINE L1 2309 2488 -19 1489 179 61 32 chr12 12639398 12639678 -131642811 - AluJo SINE Alu -24 288 1 21 36 0 0 chr12 12639681 12639709 -131642780 + AT_rich Low_complexity Low_complexity 1 28 0 464 307 99 65 chr12 12639743 12640017 -131642472 + L2 LINE L2 2445 2708 -605 773 183 8 0 chr12 12640017 12640148 -131642341 + FLAM_C SINE Alu 1 132 -1 464 307 99 65 chr12 12640148 12640673 -131641816 + L2 LINE L2 2708 3270 -43 2372 113 0 0 chr12 12641335 12641644 -131640845 - AluSq SINE Alu -4 309 1 195 313 0 15 chr12 12641820 12641887 -131640602 + MIR3 SINE MIR 143 208 0 364 337 84 70 chr12 12642080 12642424 -131640065 - L2 LINE L2 0 3272 2924 262 282 89 32 chr12 12642583 12642707 -131639782 - L2 LINE L2 -593 2721 2591 2478 236 12 49 chr12 12642713 12642904 -131639585 + L1MC4a LINE L1 5375 5571 -2237 2370 103 3 0 chr12 12642904 12643206 -131639283 + AluSq SINE Alu 1 303 -10 2478 236 12 49 chr12 12643206 12643733 -131638756 + L1MC4a LINE L1 5571 6067 -1741 3822 240 35 29 chr12 12643804 12645015 -131637474 + L1MC3 LINE L1 4078 5296 -850 231 167 15 15 chr12 12645035 12645101 -131637388 + L1MA4A LINE L1 6003 6068 -235 7844 19 6 0 chr12 12645101 12646744 -131635745 - L1PA2 LINE L1 -1 6154 4507 10987 31 0 1 chr12 12646744 12648042 -131634447 + L1PA2 LINE L1 3207 4503 -1643 1235 149 45 33 chr12 12648042 12648281 -131634208 + L1MA4A LINE L1 6059 6303 0 410 209 104 41 chr12 12648282 12648502 -131633987 + Charlie7 DNA MER1_type 2313 2546 -66 4008 191 56 89 chr12 12648503 12650160 -131632329 + L1MC3 LINE L1 5316 6962 -1080 344 303 42 0 chr12 12650182 12650324 -131632165 + L1MC4 LINE L1 7194 7341 -701 440 304 15 7 chr12 12650392 12650527 -131631962 + MLT2F LTR ERVL 1 136 -527 1666 194 57 27 chr12 12650903 12651274 -131631215 + MSTD LTR MaLR 15 396 0 1954 171 0 0 chr12 12651518 12651827 -131630662 + AluJb SINE Alu 1 309 -3 189 282 42 28 chr12 12651956 12652027 -131630462 - L2 LINE L2 -17 3296 3225 249 336 109 14 chr12 12652275 12652495 -131629994 - MIR SINE MIR -2 260 20 2496 53 0 23 chr12 12652642 12652945 -131629544 + AluY SINE Alu 1 296 -15 239 293 124 25 chr12 12653894 12654136 -131628353 - L2 LINE L2 -1339 1975 1710 1840 154 0 4 chr12 12654136 12654416 -131628073 - AluJb SINE Alu -11 301 23 276 30 0 0 chr12 12655897 12655930 -131626559 + (TG)n Simple_repeat Simple_repeat 2 34 0 2185 129 12 26 chr12 12656040 12656382 -131626107 + MER1B DNA MER1_type 1 337 0 359 322 68 0 chr12 12656490 12656608 -131625881 - MER91A DNA MER1_type -27 169 44 1220 164 100 74 chr12 12657151 12657224 -131625265 - MLT1A2 LTR MaLR 0 374 304 2639 112 26 26 chr12 12657224 12657652 -131624837 - MSTA LTR MaLR 0 428 1 1220 164 100 74 chr12 12657652 12657889 -131624600 - MLT1A2 LTR MaLR -70 304 56 420 216 244 34 chr12 12658190 12658619 -131623870 - L2 LINE L2 -75 3238 2715 275 275 65 22 chr12 12660139 12660277 -131622212 + MIR SINE MIR 54 197 -65 29 60 0 0 chr12 12661051 12661101 -131621388 + AT_rich Low_complexity Low_complexity 1 50 0 254 233 113 94 chr12 12661111 12661195 -131621294 - MIR SINE MIR -48 214 124 1539 183 79 3 chr12 12661195 12661485 -131621004 + AluJo SINE Alu 1 312 0 254 233 113 94 chr12 12661485 12661559 -131620930 - MIR SINE MIR -138 124 53 2300 112 3 0 chr12 12661610 12661913 -131620576 + AluSx SINE Alu 1 304 -8 190 282 87 10 chr12 12662264 12662367 -131620122 + MIR SINE MIR 30 140 -68 192 283 0 0 chr12 12663750 12663803 -131618686 - L3 LINE CR1 -201 1376 1324 197 33 33 0 chr12 12664743 12664773 -131617716 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 340 219 67 62 chr12 12665056 12665234 -131617255 + L2 LINE L2 1677 1855 -1459 21 0 0 0 chr12 12666394 12666415 -131616074 + AT_rich Low_complexity Low_complexity 1 21 0 273 261 17 61 chr12 12666510 12666625 -131615864 + MIR SINE MIR 41 150 -112 1024 61 15 0 chr12 12666626 12666757 -131615732 + AluY SINE Alu 176 308 -3 2302 94 3 26 chr12 12666782 12667091 -131615398 + AluSc SINE Alu 1 302 -7 235 253 22 62 chr12 12667556 12667734 -131614755 + GA-rich Low_complexity Low_complexity 4 174 0 340 168 11 68 chr12 12667734 12667924 -131614565 + G-rich Low_complexity Low_complexity 2 180 0 318 360 0 0 chr12 12667938 12668038 -131614451 + G-rich Low_complexity Low_complexity 3 102 0 594 126 0 0 chr12 12668048 12668151 -131614338 + (G)n Simple_repeat Simple_repeat 1 103 0 578 211 6 14 chr12 12668153 12668293 -131614196 + L1ME1 LINE L1 5733 5872 -279 * 904 259 23 0 chr12 12668290 12668553 -131613936 + L1MB7 LINE L1 5916 6184 0 2036 141 3 0 chr12 12669277 12669574 -131612915 + AluSg SINE Alu 1 298 -12 736 228 5 34 chr12 12670326 12670532 -131611957 + MIR SINE MIR 32 231 -31 211 246 16 0 chr12 12670722 12670783 -131611706 - MIR SINE MIR -56 152 91 2328 107 0 0 chr12 12671275 12671575 -131610914 - AluSq SINE Alu -13 300 1 261 291 13 13 chr12 12673120 12673199 -131609290 + MIR SINE MIR 20 98 -164 2109 127 6 13 chr12 12673478 12673792 -131608697 + AluJo SINE Alu 1 312 0 320 319 42 14 chr12 12673931 12674075 -131608414 - MIR SINE MIR -80 182 35 327 224 224 0 chr12 12674991 12675107 -131607382 - MIR3 SINE MIR -5 203 62 256 273 31 0 chr12 12675877 12675995 -131606494 + L1MEc LINE L1 1939 2020 -4195 1299 187 23 21 chr12 12676012 12676403 -131606086 + L1MEc LINE L1 2058 2457 -3758 322 313 135 60 chr12 12676714 12676865 -131605624 - L2 LINE L2 -4 3309 3171 1211 230 0 15 chr12 12676865 12677126 -131605363 - L1PA16 LINE L1 -4 6162 5906 1824 204 0 3 chr12 12676877 12677225 -131605264 - L1PB4 LINE L1 -3 6153 5807 322 313 135 60 chr12 12677126 12677477 -131605012 - L2 LINE L2 -142 3171 2863 45102 37 1 3 chr12 12677558 12683723 -131598766 + L1PA4 LINE L1 2 6152 -3 2344 75 0 10 chr12 12684921 12685214 -131597275 + AluY SINE Alu 1 290 -21 1750 173 0 23 chr12 12685473 12685773 -131596716 - AluJb SINE Alu -15 297 5 21 0 0 0 chr12 12685778 12685799 -131596690 + AT_rich Low_complexity Low_complexity 1 21 0 2441 70 3 0 chr12 12687233 12687533 -131594956 + AluY SINE Alu 1 301 -10 316 339 15 0 chr12 12688950 12689080 -131593409 - L2 LINE L2 -3 3310 3179 188 200 80 20 chr12 12689143 12689193 -131593296 - MIR SINE MIR -7 255 203 2306 68 31 7 chr12 12689475 12689767 -131592722 - AluY SINE Alu -12 299 1 351 265 22 81 chr12 12689943 12690128 -131592361 + L1MC5 LINE L1 7744 7917 -44 216 163 20 0 chr12 12690466 12690515 -131591974 - MIR SINE MIR -77 131 82 2214 113 13 7 chr12 12690772 12691073 -131591416 - AluSx SINE Alu -9 303 1 254 231 0 0 chr12 12691467 12691519 -131590970 + MIR3 SINE MIR 144 195 -13 194 318 80 40 chr12 12692146 12692297 -131590192 - L2 LINE L2 -213 3059 2903 2185 125 0 3 chr12 12692371 12692668 -131589821 + AluSx SINE Alu 1 296 -16 231 174 0 0 chr12 12692669 12692715 -131589774 + LTR66 LTR ERVL 394 439 -171 331 300 12 12 chr12 12692715 12692885 -131589604 + (TATATG)n Simple_repeat Simple_repeat 6 175 0 301 322 0 0 chr12 12692927 12693017 -131589472 + L1MC4 LINE L1 6614 6703 -1339 3842 181 32 61 chr12 12693733 12695149 -131587340 + L1MC1 LINE L1 4677 6031 -302 2179 153 26 3 chr12 12695269 12695654 -131586835 + L1MC1 LINE L1 5934 6327 -6 1264 126 0 0 chr12 12696064 12696239 -131586250 - AluSg/x SINE Alu -17 293 119 1201 214 28 3 chr12 12696239 12696528 -131585961 - AluY SINE Alu -10 301 6 248 203 62 16 chr12 12696737 12696801 -131585688 + L2 LINE L2 3247 3313 0 1046 212 9 28 chr12 12697107 12697324 -131585165 - MER58A DNA MER1_type 0 224 12 3058 164 20 63 chr12 12698176 12698815 -131583674 + LTR9 LTR ERV1 1 612 0 1777 175 0 13 chr12 12700530 12700833 -131581656 - AluJo SINE Alu -5 307 9 2670 27 3 3 chr12 12701768 12702069 -131580420 - AluY SINE Alu -10 301 1 1157 103 0 0 chr12 12702069 12702215 -131580274 - AluSq/x SINE Alu -167 146 1 358 265 10 10 chr12 12703577 12703675 -131578814 + MER5B DNA MER1_type 81 178 0 860 164 26 20 chr12 12704707 12704859 -131577630 - FRAM SINE Alu -13 153 1 1945 226 73 18 chr12 12705194 12705686 -131576803 + LTR40a LTR ERVL 1 519 0 1595 161 65 24 chr12 12705689 12705981 -131576508 - AluJo SINE Alu -8 304 1 21 36 0 0 chr12 12705984 12706012 -131576477 + AT_rich Low_complexity Low_complexity 1 28 0 464 308 92 66 chr12 12706046 12706320 -131576169 + L2 LINE L2 2445 2710 -603 753 191 8 0 chr12 12706320 12706451 -131576038 + FLAM_C SINE Alu 1 132 -1 464 308 92 66 chr12 12706451 12706976 -131575513 + L2 LINE L2 2710 3270 -43 2372 113 0 0 chr12 12707635 12707944 -131574545 - AluSq SINE Alu -4 309 1 195 313 0 15 chr12 12708120 12708187 -131574302 + MIR3 SINE MIR 143 208 0 349 340 84 70 chr12 12708380 12708724 -131573765 - L2 LINE L2 0 3272 2924 185 183 402 0 chr12 12709419 12709501 -131572988 - L2 LINE L2 -2 3270 3156 2424 66 7 7 chr12 12710023 12710327 -131572162 - AluY SINE Alu -5 306 3 2249 118 0 3 chr12 12711158 12711463 -131571026 + AluSx SINE Alu 2 305 -7 1324 171 69 104 chr12 12711475 12711516 -131570973 + MLT1B LTR MaLR 1 42 -348 2338 82 7 0 chr12 12711516 12711808 -131570681 + AluSp SINE Alu 1 294 -19 1324 171 69 104 chr12 12711808 12712170 -131570319 + MLT1B LTR MaLR 42 390 0 3402 161 91 18 chr12 12713261 12713357 -131569132 - MER21B LTR ERV1 -85 778 690 3545 111 45 0 chr12 12713357 12713449 -131569040 - MER41A LTR ERV1 0 554 468 2528 31 3 3 chr12 12713449 12713740 -131568749 + AluY SINE Alu 1 291 -20 3545 111 45 0 chr12 12713740 12714177 -131568312 - MER41A LTR ERV1 -86 468 1 3402 161 91 18 chr12 12714177 12714750 -131567739 - MER21B LTR ERV1 -173 690 60 2470 74 0 0 chr12 12714751 12715048 -131567441 + AluY SINE Alu 1 297 -14 2508 77 0 0 chr12 12715931 12716242 -131566247 - AluY SINE Alu 0 311 1 460 252 27 41 chr12 12716483 12716630 -131565859 - MLT1J LTR MaLR -6 505 361 1926 152 7 10 chr12 12716641 12716944 -131565545 + AluSx SINE Alu 1 302 -10 654 262 120 75 chr12 12717487 12717930 -131564559 + HAL1 LINE L1 1 463 -2044 1750 173 0 23 chr12 12719079 12719379 -131563110 + AluJb SINE Alu 5 297 -15 2144 86 7 20 chr12 12719642 12719934 -131562555 - AluY SINE Alu -23 288 1 298 183 183 25 chr12 12720095 12720215 -131562274 - MER69 DNA AcHobo -10 2516 2378 1531 165 26 0 chr12 12720356 12720628 -131561861 + L1MC3 LINE L1 7500 7778 -7 642 253 96 76 chr12 12720642 12721000 -131561489 - L1M3 LINE L1 -515 5665 5289 368 201 49 69 chr12 12721114 12721258 -131561231 - L1ME4a LINE L1 -18 6103 5963 376 190 190 7 chr12 12721296 12721366 -131561123 + L1MA8 LINE L1 6121 6177 -114 1904 154 3 13 chr12 12721366 12721671 -131560818 - AluJo SINE Alu -10 302 1 376 190 190 7 chr12 12721671 12721742 -131560747 + L1MA8 LINE L1 6177 6288 -3 936 244 34 15 chr12 12721906 12722172 -131560317 + HsTC2c DNA Tc2 2 272 -457 518 251 240 0 chr12 12722181 12722360 -131560129 + HsTC2c DNA Tc2 508 729 0 1737 155 8 0 chr12 12722681 12722939 -131559550 - AluSq SINE Alu -53 260 1 4119 157 48 28 chr12 12722965 12723856 -131558633 - L1MDa LINE L1 -4152 2388 1480 748 251 69 0 chr12 12723852 12724027 -131558462 - L1MDa LINE L1 -5765 775 589 * 2053 110 13 23 chr12 12724441 12724751 -131557738 + AluSx SINE Alu 1 307 -5 21 36 0 0 chr12 12725021 12725049 -131557440 + AT_rich Low_complexity Low_complexity 1 28 0 938 278 80 91 chr12 12725439 12725894 -131556595 - L1MEc LINE L1 -4920 2202 1744 1941 123 3 27 chr12 12725894 12726186 -131556303 - AluSx SINE Alu -25 287 3 938 278 80 91 chr12 12726186 12726762 -131555727 - L1MEc LINE L1 -5378 1744 1189 2013 145 0 16 chr12 12726762 12727065 -131555424 - AluJo SINE Alu -14 298 1 938 278 80 91 chr12 12727065 12727488 -131555001 - L1MEc LINE L1 -5933 1189 763 280 261 114 35 chr12 12727490 12727636 -131554853 - MIR3 SINE MIR -35 173 17 1336 101 0 0 chr12 12727869 12728048 -131554441 - AluSx SINE Alu -121 191 13 658 139 37 0 chr12 12728061 12728169 -131554320 + MER41B LTR ERV1 524 635 0 264 264 35 11 chr12 12728185 12728272 -131554217 + MIR SINE MIR 70 158 -104 288 0 0 0 chr12 12728541 12728573 -131553916 + (CA)n Simple_repeat Simple_repeat 2 33 0 1342 149 0 2 chr12 12728763 12729006 -131553483 - AluJb SINE Alu -26 286 1 241 245 19 0 chr12 12729006 12729059 -131553430 + MER21B LTR ERV1 18 71 -792 1924 141 3 6 chr12 12729059 12729372 -131553117 - AluSx SINE Alu 0 312 1 735 256 46 15 chr12 12729393 12729655 -131552834 - L1MEc LINE L1 -6129 294 25 2899 121 5 2 chr12 12729926 12730349 -131552140 - MER41B LTR ERV1 -211 424 1 1268 131 0 70 chr12 12730731 12730904 -131551585 - AluJb SINE Alu -18 294 139 1940 108 0 59 chr12 12730904 12731210 -131551279 - AluSx SINE Alu -24 288 1 1268 131 0 70 chr12 12731210 12731265 -131551224 - AluJb SINE Alu -173 139 82 1441 150 116 45 chr12 12731569 12731950 -131550539 + MER69 DNA AcHobo 1484 1891 -635 4697 185 26 13 chr12 12732149 12733338 -131549151 - L1MB8 LINE L1 -17 6161 4960 1238 172 86 81 chr12 12733338 12733710 -131548779 + MLT1A2 LTR MaLR 1 374 0 4697 185 26 13 chr12 12733710 12733806 -131548683 - L1MB8 LINE L1 -1218 4960 4867 17214 28 0 0 chr12 12734819 12736837 -131545652 - L1P LINE L1 -924 5222 3205 6360 24 1 0 chr12 12736835 12737579 -131544910 + L1P LINE L1 4507 5251 -895 * 791 116 8 0 chr12 12737679 12737800 -131544689 + AluSp/q SINE Alu 191 312 -1 1602 153 80 0 chr12 12737813 12738100 -131544389 + AluSg SINE Alu 1 310 0 370 287 73 24 chr12 12738100 12738264 -131544225 + L1MC5 LINE L1 7492 7663 -298 694 194 0 22 chr12 12738268 12738402 -131544087 + AluJo SINE Alu 6 136 -176 1527 130 119 4 chr12 12738467 12738744 -131543745 + AluSx SINE Alu 1 309 -3 359 193 44 61 chr12 12738745 12738859 -131543630 - L1MEc LINE L1 -6242 154 43 189 260 10 125 chr12 12738877 12738981 -131543508 + MER5A DNA MER1_type 45 136 -53 * 326 325 39 132 chr12 12738975 12739406 -131543083 - L2 LINE L2 -35 3237 2847 2073 103 0 17 chr12 12739439 12739741 -131542748 + AluY SINE Alu 1 297 -14 34 24 0 0 chr12 12741544 12741585 -131540904 + AT_rich Low_complexity Low_complexity 1 41 0 1668 136 15 11 chr12 12741591 12741864 -131540625 - AluSx SINE Alu -38 274 1 267 133 0 0 chr12 12742987 12743032 -131539457 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 1617 178 0 25 chr12 12743035 12743355 -131539134 - AluJb SINE Alu 0 312 1 972 111 0 0 chr12 12743355 12743490 -131538999 - AluJb SINE Alu -177 135 1 360 209 8 23 chr12 12743496 12743625 -131538864 + CT-rich Low_complexity Low_complexity 4 130 0 241 203 174 0 chr12 12744398 12744419 -131538070 - MLT1J LTR MaLR -8 503 487 228 86 0 0 chr12 12744419 12744454 -131538035 + (CAA)n Simple_repeat Simple_repeat 3 37 0 241 203 174 0 chr12 12744454 12744501 -131537988 - MLT1J LTR MaLR -24 487 423 784 292 10 5 chr12 12744642 12744851 -131537638 - MLT1J LTR MaLR -300 211 2 538 245 93 100 chr12 12745084 12745374 -131537115 + L3 LINE CR1 1129 1416 -161 266 340 38 19 chr12 12745383 12745489 -131537000 - L2 LINE L2 -32 3240 3133 218 368 53 0 chr12 12745563 12745658 -131536831 + L3 LINE CR1 1458 1557 -20 227 248 47 147 chr12 12747477 12747556 -131534933 - MER5B DNA MER1_type 0 178 115 2075 136 0 3 chr12 12747556 12747864 -131534625 - AluSx SINE Alu -5 307 1 227 248 47 147 chr12 12747864 12747913 -131534576 - MER5B DNA MER1_type -63 115 63 242 231 13 64 chr12 12747949 12748027 -131534462 + MIR SINE MIR 29 102 -160 426 39 0 0 chr12 12748983 12749035 -131533454 + (TG)n Simple_repeat Simple_repeat 2 53 0 598 247 34 17 chr12 12750725 12750928 -131531561 - MER63 DNA MER1_type -2 1686 2 208 349 40 60 chr12 12751575 12751724 -131530765 - L2 LINE L2 0 3272 3127 2511 160 71 23 chr12 12752351 12752871 -131529618 - L1MB7 LINE L1 -13 6171 5627 2272 84 0 10 chr12 12752880 12753189 -131529300 - AluY SINE Alu -5 306 1 2184 104 0 0 chr12 12753676 12753974 -131528515 - AluSx SINE Alu -14 298 1 448 269 45 70 chr12 12754107 12754227 -131528262 - MIR SINE MIR -109 153 36 530 245 170 0 chr12 12754227 12754386 -131528103 + MER5A DNA MER1_type 4 189 0 448 269 45 70 chr12 12754386 12754421 -131528068 - MIR SINE MIR -226 36 2 770 268 75 8 chr12 12754773 12755012 -131527477 - MIR SINE MIR -6 256 2 2194 116 0 3 chr12 12755754 12756056 -131526433 - HERVH LTR ERV1 -2925 4788 4488 3479 100 6 6 chr12 12756058 12756560 -131525929 - HERVH LTR ERV1 -3720 3993 3492 886 149 20 0 chr12 12756550 12756698 -131525791 - HERVH LTR ERV1 -4423 3290 3140 * 303 263 0 66 chr12 12756677 12756814 -131525675 - HERVH LTR ERV1 -4718 2995 2868 * 795 248 58 15 chr12 12757474 12757680 -131524809 - MIR SINE MIR -46 216 2 1942 173 99 15 chr12 12757708 12758101 -131524388 + MSTB LTR MaLR 1 426 0 226 191 309 0 chr12 12758228 12758296 -131524193 + MIR SINE MIR 161 249 -13 279 256 23 0 chr12 12759465 12759551 -131522938 + L1M LINE L1 5254 5341 -2467 4175 181 5 50 chr12 12759560 12760049 -131522440 + L1MA5A LINE L1 4125 4584 -1562 242 35 0 0 chr12 12760049 12760078 -131522411 - U6 snRNA snRNA -77 30 2 4175 181 5 50 chr12 12760078 12760489 -131522000 + L1MA5A LINE L1 4584 5012 -1134 321 225 7 35 chr12 12760645 12760787 -131521702 + CT-rich Low_complexity Low_complexity 4 141 0 354 262 8 40 chr12 12760832 12760958 -131521531 + CT-rich Low_complexity Low_complexity 4 125 0 207 286 16 0 chr12 12761559 12761622 -131520867 + MIR3 SINE MIR 97 160 -48 1004 242 109 8 chr12 12761622 12761878 -131520611 + MER58 DNA MER1_type 1 282 -2138 1799 151 10 17 chr12 12763003 12763301 -131519188 - AluJo SINE Alu -16 296 1 420 292 124 22 chr12 12763383 12763561 -131518928 + MIR SINE MIR 56 251 -11 853 102 16 16 chr12 12763709 12763837 -131518652 - AluSq/x SINE Alu -183 129 2 3144 128 11 78 chr12 12763927 12764552 -131517937 - L1MA9 LINE L1 -5 6307 5725 438 262 101 13 chr12 12765373 12765522 -131516967 + MIR SINE MIR 31 192 -70 304 148 2 0 chr12 12765766 12765813 -131516676 + Alu SINE Alu 1 42 -260 374 222 120 8 chr12 12766455 12766515 -131515974 + MLT1H LTR MaLR 407 459 -90 1993 134 10 0 chr12 12766515 12766822 -131515667 - AluSp SINE Alu -2 311 2 374 222 120 8 chr12 12766822 12766878 -131515611 + MLT1H LTR MaLR 459 536 -13 216 197 14 70 chr12 12767780 12767851 -131514638 + CT-rich Low_complexity Low_complexity 1 67 0 21 0 0 0 chr12 12767857 12767878 -131514611 + AT_rich Low_complexity Low_complexity 1 21 0 6596 120 38 1 chr12 12767991 12769131 -131513358 + L1MA5A LINE L1 5114 6294 -3 303 125 0 0 chr12 12769135 12769183 -131513306 + L1MC3 LINE L1 7461 7508 -277 432 187 0 0 chr12 12769195 12769270 -131513219 + AluJ/FLAM SINE Alu 2 76 -236 572 126 102 0 chr12 12769416 12769543 -131512946 - AluY SINE Alu -170 141 2 923 174 58 29 chr12 12769628 12769835 -131512654 - AluJo SINE Alu -14 298 86 229 272 103 15 chr12 12769850 12769986 -131512503 - L1ME LINE L1 -283 5838 5691 378 47 250 0 chr12 12770077 12770141 -131512348 + MADE1 DNA Mariner 1 80 0 1605 185 23 3 chr12 12770254 12770557 -131511932 - AluJo SINE Alu -3 309 1 7630 22 10 0 chr12 12771053 12771978 -131510511 + L1PA4 LINE L1 5221 6155 0 5502 111 35 1 chr12 12772678 12773498 -131508991 - HERVH LTR ERV1 -5604 2109 1262 32 43 0 0 chr12 12773512 12773558 -131508931 + GC_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr12 12773572 12773594 -131508895 + GC_rich Low_complexity Low_complexity 1 22 0 1832 148 0 3 chr12 12773848 12774146 -131508343 + AluSx SINE Alu 1 297 -15 235 163 0 23 chr12 12774169 12774212 -131508277 - MER34B LTR ERV1 -466 99 58 1807 108 7 49 chr12 12774521 12774827 -131507662 - AluJb SINE Alu -19 293 1 235 325 26 0 chr12 12774878 12774955 -131507534 + MIR SINE MIR 1 79 -183 1713 195 142 14 chr12 12775079 12775509 -131506980 - MER31A LTR ERV1 0 485 1 1265 193 0 0 chr12 12776240 12776458 -131506031 + HERVH LTR ERV1 4932 5149 -2564 1413 126 23 0 chr12 12776459 12776674 -131505815 + HERVH LTR ERV1 5600 5819 -1894 * 2440 90 50 13 chr12 12776672 12777050 -131505439 + HERVH LTR ERV1 7322 7713 0 2120 115 154 5 chr12 12777050 12777440 -131505049 + LTR7 LTR ERV1 1 448 -2 358 206 18 13 chr12 12777442 12777539 -131504950 - AluS SINE Alu -229 74 3 2315 38 41 7 chr12 12778464 12778757 -131503732 + AluY SINE Alu 1 303 -8 366 324 103 79 chr12 12779059 12779466 -131503023 - L2 LINE L2 0 3313 2897 314 402 0 27 chr12 12780149 12780333 -131502156 + C-rich Low_complexity Low_complexity 2 180 0 272 308 15 0 chr12 12780341 12780406 -131502083 + polypyrimidine Low_complexity Low_complexity 6 71 0 381 167 45 0 chr12 12780548 12780614 -131501875 + AluS SINE Alu 1 69 -239 1211 229 14 32 chr12 12780680 12781051 -131501438 - L1M4 LINE L1 -3417 2729 2366 2039 101 0 49 chr12 12782395 12782703 -131499786 + AluSg SINE Alu 1 293 -17 208 273 0 18 chr12 12782815 12782870 -131499619 - L3 LINE CR1 -655 922 869 709 157 7 82 chr12 12783318 12783465 -131499024 + FLAM_C SINE Alu 2 137 -6 1891 112 17 10 chr12 12783478 12783772 -131498717 + AluSx SINE Alu 3 298 -14 297 186 0 0 chr12 12784050 12784120 -131498369 + G-rich Low_complexity Low_complexity 1 70 0 321 281 0 0 chr12 12784212 12784320 -131498169 + G-rich Low_complexity Low_complexity 1 108 0 23 68 0 0 chr12 12784420 12784464 -131498025 + GC_rich Low_complexity Low_complexity 1 44 0 2142 81 7 3 chr12 12784952 12785247 -131497242 - AluSx SINE Alu -16 296 1 392 353 12 42 chr12 12785424 12785591 -131496898 + L3 LINE CR1 1309 1470 -107 2829 176 36 6 chr12 12785935 12785971 -131496518 - MLT2B2 LTR ERVL 0 515 482 255 31 0 0 chr12 12785971 12786003 -131496486 + (CA)n Simple_repeat Simple_repeat 1 32 0 2829 176 36 6 chr12 12786003 12786466 -131496023 - MLT2B2 LTR ERVL -33 482 1 435 317 109 25 chr12 12786545 12786867 -131495622 + MLT1K LTR MaLR 238 586 -2 1276 62 17 0 chr12 12787174 12787352 -131495137 + L1P LINE L1 4323 4503 -1643 1211 153 45 33 chr12 12787352 12787591 -131494898 + L1MA4A LINE L1 6059 6303 0 269 234 99 45 chr12 12787592 12787814 -131494675 + Charlie7 DNA MER1_type 2313 2546 -66 534 234 43 28 chr12 12787818 12788061 -131494428 + L1MC/D LINE L1 5319 5573 -760 1703 143 80 0 chr12 12788338 12788679 -131493810 - AluSx SINE Alu 0 364 1 1753 189 46 19 chr12 12789279 12789696 -131492793 + MSTA LTR MaLR 1 428 0 425 243 139 28 chr12 12789696 12789840 -131492649 + MIR SINE MIR 77 236 -26 215 109 87 43 chr12 12790090 12790136 -131492353 - L2 LINE L2 0 3313 3266 1856 153 3 0 chr12 12790727 12791035 -131491454 + AluJb SINE Alu 1 309 -3 3204 141 46 22 chr12 12791135 12791408 -131491081 - MER7C DNA MER2_type -2426 602 337 2456 71 0 0 chr12 12791408 12791718 -131490771 + AluY SINE Alu 1 310 -1 3204 141 46 22 chr12 12791718 12792032 -131490457 - MER7C DNA MER2_type -2691 337 1 181 385 0 0 chr12 12792105 12792170 -131490319 - L2 LINE L2 -213 3059 2995 870 220 0 12 chr12 12792321 12792494 -131489995 + MER5B DNA MER1_type 7 177 -1 646 214 16 0 chr12 12792668 12792794 -131489695 + MER5A DNA MER1_type 2 129 -60 419 226 9 47 chr12 12794292 12794398 -131488091 + MIR SINE MIR 24 125 -83 4785 125 44 36 chr12 12794910 12795768 -131486721 - L1MA8 LINE L1 -25 6266 5402 189 287 223 0 chr12 12795773 12795867 -131486622 - MIR SINE MIR -54 208 94 1331 154 33 173 chr12 12796289 12796555 -131485934 + MLT1A2 LTR MaLR 11 198 -176 2255 96 0 0 chr12 12796555 12796856 -131485633 + AluSc SINE Alu 1 301 -8 1331 154 33 173 chr12 12796856 12797012 -131485477 + MLT1A2 LTR MaLR 198 374 0 347 232 20 0 chr12 12797046 12797145 -131485344 - HAL1 LINE L1 -1191 1316 1216 198 0 0 0 chr12 12797240 12797262 -131485227 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 440 233 99 80 chr12 12797344 12797570 -131484919 - MLT1L LTR MaLR -203 308 101 2100 122 0 6 chr12 12797647 12797958 -131484531 - AluSx SINE Alu -3 309 1 1101 293 123 61 chr12 12797967 12799082 -131483407 - HAL1 LINE L1 -1323 1184 1 2101 122 13 0 chr12 12799625 12799928 -131482561 - AluSx SINE Alu -5 307 1 305 333 50 28 chr12 12799939 12800080 -131482409 + L1MC/D LINE L1 5614 5757 -2051 758 251 69 0 chr12 12800344 12800519 -131481970 + L1MD1 LINE L1 589 775 -5765 * 4878 171 56 38 chr12 12800515 12801433 -131481056 + L1MD1 LINE L1 1480 2380 -4160 1954 136 7 0 chr12 12801433 12801727 -131480762 + AluSx SINE Alu 1 296 -16 4878 171 56 38 chr12 12801727 12801941 -131480548 + L1MD1 LINE L1 2380 2589 -3951 1473 174 7 24 chr12 12801941 12802228 -131480261 + AluJo SINE Alu 6 287 -25 4878 171 56 38 chr12 12802228 12802304 -131480185 + L1MD1 LINE L1 2589 2662 -3878 1970 133 0 3 chr12 12802304 12802604 -131479885 + AluSx SINE Alu 4 302 -10 4878 171 56 38 chr12 12802604 12803009 -131479480 + L1MD1 LINE L1 2662 3123 -3417 342 182 45 0 chr12 12803075 12803141 -131479348 - AluS SINE Alu -239 69 1 6325 204 32 33 chr12 12803141 12803324 -131479165 + L1MD1 LINE L1 3830 4012 -2624 1332 176 28 113 chr12 12803324 12803721 -131478768 - MLT1A1 LTR MaLR -2 363 1 6325 204 32 33 chr12 12803721 12805994 -131476495 + L1MD1 LINE L1 4012 6284 -352 2594 35 0 3 chr12 12805994 12806306 -131476183 + AluY SINE Alu 1 311 0 6325 204 32 33 chr12 12806306 12806659 -131475830 + L1MD1 LINE L1 6284 6636 0 404 214 22 129 chr12 12806716 12806894 -131475595 - MLT1H LTR MaLR -165 384 226 1659 123 0 4 chr12 12806908 12807151 -131475338 + AluSx SINE Alu 5 246 -66 2212 111 3 0 chr12 12807151 12807456 -131475033 + AluSq SINE Alu 1 307 -6 477 76 0 0 chr12 12807500 12807566 -131474923 + (CAGGA)n Simple_repeat Simple_repeat 4 69 0 209 111 83 0 chr12 12807566 12807602 -131474887 + polypurine Low_complexity Low_complexity 2 40 0 297 295 19 45 chr12 12807645 12807801 -131474688 - MLT1H LTR MaLR -375 174 23 543 206 0 0 chr12 12807968 12808143 -131474346 + (TG)n Simple_repeat Simple_repeat 2 176 0 663 169 0 0 chr12 12808163 12808335 -131474154 + (TG)n Simple_repeat Simple_repeat 2 173 0 780 175 0 0 chr12 12808352 12808625 -131473864 + (TG)n Simple_repeat Simple_repeat 1 273 0 2389 126 36 83 chr12 12808794 12809262 -131473227 - Tigger2 DNA MER2_type 0 2718 2273 462 152 0 0 chr12 12809253 12809319 -131473170 - Tigger2 DNA MER2_type -2651 67 2 * 412 311 37 0 chr12 12809503 12809638 -131472851 + MIR SINE MIR 110 249 -13 2242 76 3 3 chr12 12809721 12810023 -131472466 + AluSg SINE Alu 3 304 -6 1380 66 0 0 chr12 12810558 12810739 -131471750 + AluY SINE Alu 131 311 0 1349 64 25 136 chr12 12810973 12811208 -131471281 + MER30 DNA MER1_type 1 209 -21 495 267 181 33 chr12 12811687 12811957 -131470532 - L3 LINE CR1 -70 1507 1198 4215 134 18 1 chr12 12812373 12813035 -131469454 - L1MA7 LINE L1 0 6291 5619 897 243 7 45 chr12 12813364 12813610 -131468879 - MIR SINE MIR -7 255 15 2306 82 20 0 chr12 12813688 12813991 -131468498 - AluSp SINE Alu -4 309 1 769 329 60 7 chr12 12814012 12814295 -131468194 - L3 LINE CR1 -575 1002 705 517 274 42 99 chr12 12814307 12814497 -131467992 - MIR SINE MIR 0 262 90 2197 102 0 3 chr12 12814497 12814800 -131467689 + AluSx SINE Alu 1 302 -10 517 274 42 99 chr12 12814800 12814872 -131467617 - MIR SINE MIR -172 90 15 182 279 54 108 chr12 12814890 12814945 -131467544 - L3 LINE CR1 -894 683 627 2256 88 3 0 chr12 12814945 12815251 -131467238 + AluSg SINE Alu 1 307 -3 182 279 54 108 chr12 12815251 12815324 -131467165 - L3 LINE CR1 -950 627 562 203 358 37 0 chr12 12815352 12815433 -131467056 - MIR SINE MIR -120 142 59 296 356 205 8 chr12 12815521 12815760 -131466729 - L3 LINE CR1 -1058 519 234 1853 183 137 14 chr12 12816140 12816572 -131465917 + MER31A LTR ERV1 1 485 0 235 325 26 0 chr12 12816696 12816773 -131465716 - MIR SINE MIR -183 79 1 2200 72 3 23 chr12 12816824 12817128 -131465361 + AluSq SINE Alu 1 298 -15 791 179 98 98 chr12 12817245 12817652 -131464837 - LTR37A LTR ERV1 -1 425 19 2290 74 10 0 chr12 12817752 12818050 -131464439 + AluSp SINE Alu 1 301 -12 307 259 37 56 chr12 12818108 12818216 -131464273 + MIR SINE MIR 12 117 -145 1968 104 13 23 chr12 12818218 12818526 -131463963 - AluSx SINE Alu -5 307 3 1478 88 23 9 chr12 12818530 12818747 -131463742 - AluSx SINE Alu -11 301 82 2215 68 48 6 chr12 12818748 12819059 -131463430 + LTR7 LTR ERV1 125 448 -2 20842 89 15 23 chr12 12819061 12822080 -131460409 + HERVH LTR ERV1 1 2995 -4718 931 135 20 0 chr12 12822059 12822207 -131460282 + HERVH LTR ERV1 3140 3290 -4423 * 3512 103 4 6 chr12 12822197 12822700 -131459789 + HERVH LTR ERV1 3492 3993 -3720 4487 140 0 1 chr12 12822702 12823365 -131459124 + HERVH LTR ERV1 4488 5149 -2564 1424 130 19 0 chr12 12823366 12823582 -131458907 + HERVH LTR ERV1 5600 5819 -1894 * 2409 95 50 13 chr12 12823580 12823958 -131458531 + HERVH LTR ERV1 7322 7713 0 2394 92 148 5 chr12 12823958 12824350 -131458139 + LTR7 LTR ERV1 1 448 -2 522 137 0 0 chr12 12824352 12824425 -131458064 - AluSx SINE Alu -239 74 2 1168 134 69 56 chr12 12824428 12824659 -131457830 - AluJo SINE Alu -20 292 59 337 246 0 0 chr12 12824706 12824775 -131457714 + MIR SINE MIR 101 169 -93 1244 189 139 99 chr12 12825291 12825526 -131456963 - MER34B LTR ERV1 0 565 341 2123 110 0 13 chr12 12825526 12825836 -131456653 + AluSx SINE Alu 1 306 -6 1244 189 139 99 chr12 12825836 12826056 -131456433 - MER34B LTR ERV1 -224 341 86 2254 106 3 0 chr12 12826056 12826367 -131456122 - AluSx SINE Alu 0 312 1 1244 189 139 99 chr12 12826367 12826413 -131456076 - MER34B LTR ERV1 -479 86 43 370 274 116 0 chr12 12826832 12826978 -131455511 + L1ME LINE L1 5583 5745 -376 2355 62 17 0 chr12 12826992 12827284 -131455205 - AluY SINE Alu -12 299 3 793 114 0 0 chr12 12827339 12827453 -131455036 - AluSg/x SINE Alu -10 302 189 1968 134 0 3 chr12 12827544 12827842 -131454647 + AluSx SINE Alu 1 297 -15 235 163 0 23 chr12 12827865 12827908 -131454581 - MER34B LTR ERV1 -466 99 58 1667 131 7 44 chr12 12828217 12828515 -131453974 - AluJb SINE Alu -19 293 7 180 77 0 0 chr12 12828645 12828671 -131453818 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1070 209 178 4 chr12 12828681 12828934 -131453555 - AluJo SINE Alu -4 298 2 22 0 0 0 chr12 12828934 12828956 -131453533 + AT_rich Low_complexity Low_complexity 1 22 0 2345 194 28 20 chr12 12828975 12829482 -131453007 - MER41B LTR ERV1 -9 597 100 502 168 0 65 chr12 12829511 12829618 -131452871 - AluJb SINE Alu -207 105 6 2353 52 0 29 chr12 12829694 12830001 -131452488 + AluY SINE Alu 1 298 -13 525 259 124 11 chr12 12830550 12830679 -131451810 + MIR SINE MIR 51 209 -53 2057 87 31 3 chr12 12830679 12830967 -131451522 + AluSx SINE Alu 1 296 -16 525 259 124 11 chr12 12830967 12831022 -131451467 + MIR SINE MIR 209 256 -6 1851 121 44 3 chr12 12833153 12833450 -131449039 - AluJo SINE Alu -2 310 2 318 167 0 0 chr12 12833833 12833893 -131448596 + (CA)n Simple_repeat Simple_repeat 1 60 0 484 167 0 192 chr12 12834264 12834498 -131447991 + MER53 DNA DNA 1 189 0 287 200 55 0 chr12 12834509 12834564 -131447925 - L2 LINE L2 0 3313 3256 257 35 0 0 chr12 12834567 12834596 -131447893 + tRNA-Lys-AAA tRNA tRNA 1 29 -47 184 148 315 0 chr12 12834597 12834651 -131447838 - L2 LINE L2 -46 3267 3197 2088 125 23 0 chr12 12834710 12835015 -131447474 - AluSx SINE Alu 0 312 1 694 194 0 22 chr12 12835080 12835214 -131447275 - AluJo SINE Alu -176 136 6 358 274 65 48 chr12 12835218 12835387 -131447102 - L1MC5 LINE L1 -298 7663 7489 1602 153 80 0 chr12 12835387 12835674 -131446815 - AluSg SINE Alu 0 310 1 358 274 65 48 chr12 12835674 12835690 -131446799 - L1MC5 LINE L1 -472 7489 7475 2271 87 6 0 chr12 12835690 12836001 -131446488 - AluSp SINE Alu 0 313 1 796 211 35 31 chr12 12836002 12836230 -131446259 - L1MC5 LINE L1 -432 7529 7301 231 332 47 1 chr12 12837139 12837260 -131445229 - MIR SINE MIR -17 191 61 1681 159 24 10 chr12 12837536 12837831 -131444658 + AluJo SINE Alu 1 299 -13 411 339 54 6 chr12 12837888 12838074 -131444415 - MIR SINE MIR -32 230 38 216 263 25 38 chr12 12838362 12838442 -131444047 + L2 LINE L2 2692 2770 -544 222 322 0 22 chr12 12838522 12838612 -131443877 + GA-rich Low_complexity Low_complexity 6 93 0 2088 105 3 0 chr12 12839076 12839370 -131443119 - AluSg SINE Alu -14 296 2 2264 65 7 3 chr12 12840201 12840492 -131441997 + AluY SINE Alu 3 294 -17 2153 119 0 3 chr12 12840615 12840917 -131441572 + AluSg SINE Alu 1 301 -9 186 337 11 11 chr12 12840967 12841059 -131441430 + MIR SINE MIR 97 188 -74 1671 157 0 11 chr12 12841180 12841461 -131441028 + AluJb SINE Alu 3 280 -32 1478 168 3 28 chr12 12841461 12841750 -131440739 + AluJo SINE Alu 17 300 -12 2163 98 0 13 chr12 12841828 12842133 -131440356 - AluSg SINE Alu -9 301 1 186 207 91 91 chr12 12842368 12842489 -131440000 - MIR3 SINE MIR -44 164 44 2365 80 0 0 chr12 12843229 12843540 -131438949 - AluY SINE Alu 0 311 1 735 246 41 100 chr12 12843781 12843939 -131438550 - MLT1J LTR MaLR -6 505 395 1573 178 0 11 chr12 12843939 12844215 -131438274 + AluSx SINE Alu 1 273 -39 735 246 41 100 chr12 12844215 12844378 -131438111 - MLT1J LTR MaLR -116 395 224 800 155 31 0 chr12 12844405 12844534 -131437955 - AluJo SINE Alu -178 134 2 398 247 165 28 chr12 12844540 12844722 -131437767 - MLT1J LTR MaLR -295 216 10 1953 85 0 41 chr12 12845088 12845381 -131437108 + AluSx SINE Alu 23 303 -9 1645 178 0 13 chr12 12846316 12846619 -131435870 + AluJo SINE Alu 9 307 -5 3071 164 20 63 chr12 12848333 12848972 -131433517 - LTR9 LTR ERV1 0 612 1 244 173 19 0 chr12 12849309 12849361 -131433128 - MER4A LTR ERV1 0 664 612 2132 118 0 6 chr12 12849361 12849675 -131432814 + AluSq SINE Alu 1 312 -1 2022 105 0 7 chr12 12849692 12849968 -131432521 + AluSx SINE Alu 3 276 -36 2106 118 0 9 chr12 12850625 12850940 -131431549 + AluSq SINE Alu 2 313 0 373 276 88 119 chr12 12851920 12852399 -131430090 + L3 LINE CR1 1111 1574 -3 813 152 8 0 chr12 12853627 12853752 -131428737 + FLAM_C SINE Alu 1 126 -7 2238 113 0 0 chr12 12853790 12854099 -131428390 + AluSx SINE Alu 4 312 0 1653 157 43 17 chr12 12854110 12854410 -131428079 + AluJb SINE Alu 1 308 -4 439 244 56 56 chr12 12854412 12854572 -131427917 - MIR SINE MIR -90 172 13 241 262 252 29 chr12 12854604 12854707 -131427782 + L2 LINE L2 3146 3271 -1 21 0 0 0 chr12 12855263 12855284 -131427205 + AT_rich Low_complexity Low_complexity 1 21 0 3987 168 63 32 chr12 12856625 12857138 -131425351 + L1MB7 LINE L1 5101 5597 -587 2430 58 0 6 chr12 12857138 12857450 -131425039 + AluY SINE Alu 1 310 -1 3987 168 63 32 chr12 12857450 12857979 -131424510 + L1MB7 LINE L1 5597 6176 -8 208 349 40 60 chr12 12858601 12858750 -131423739 + L2 LINE L2 3127 3272 0 223 283 0 0 chr12 12860002 12860062 -131422427 + MIR SINE MIR 175 234 -28 2224 92 0 16 chr12 12860495 12860811 -131421678 - AluY SINE Alu 0 311 1 326 325 39 132 chr12 12860844 12861275 -131421214 + L2 LINE L2 2847 3237 -35 189 260 10 125 chr12 12861269 12861373 -131421116 - MER5A DNA MER1_type -53 136 45 * 370 239 18 26 chr12 12861391 12861504 -131420985 + L1MEc LINE L1 43 154 -6242 1118 45 0 0 chr12 12861514 12861646 -131420843 - AluY SINE Alu -179 132 1 4876 246 126 31 chr12 12861668 12862941 -131419548 + L1MEc LINE L1 167 1318 -5078 360 0 0 0 chr12 12862941 12862981 -131419508 + (CA)n Simple_repeat Simple_repeat 2 41 0 4876 246 126 31 chr12 12862981 12863383 -131419106 + L1MEc LINE L1 1318 1680 -4716 2013 123 3 0 chr12 12863383 12863675 -131418814 + AluSx SINE Alu 1 293 -19 4876 246 126 31 chr12 12863675 12864035 -131418454 + L1MEc LINE L1 1680 2396 -4000 1410 150 30 34 chr12 12864037 12864304 -131418185 + AluJb SINE Alu 37 302 -10 2563 199 129 39 chr12 12864304 12864405 -131418084 + L1MEc LINE L1 2344 2435 -3780 2130 146 97 5 chr12 12864405 12864795 -131417694 + MSTB LTR MaLR 1 426 0 2563 199 129 39 chr12 12864795 12865610 -131416879 + L1MEc LINE L1 2435 3342 -2873 559 260 81 45 chr12 12865582 12865890 -131416599 + L1MEc LINE L1 1625 1943 -4453 * 1835 133 0 4 chr12 12865893 12866171 -131416318 + AluSx SINE Alu 1 277 -35 234 196 0 0 chr12 12866171 12866217 -131416272 + AluSx SINE Alu 253 298 -4 9996 138 66 57 chr12 12866222 12867377 -131415112 + L1M4c LINE L1 8 1150 -5234 2408 62 0 3 chr12 12867377 12867683 -131414806 + AluY SINE Alu 1 305 -6 9996 138 66 57 chr12 12867683 12867702 -131414787 + L1M4c LINE L1 1150 1167 -5217 4875 179 78 27 chr12 12867702 12868672 -131413817 - LTR28 LTR ERV1 0 1020 1 9996 138 66 57 chr12 12868672 12869182 -131413307 + L1M4c LINE L1 1167 1671 -4713 2690 92 19 8 chr12 12869182 12869553 -131412936 - THE1C LTR MaLR 0 375 1 9996 138 66 57 chr12 12869553 12869739 -131412750 + L1M4c LINE L1 1671 1854 -4530 1828 130 36 11 chr12 12869739 12870016 -131412473 - AluSx SINE Alu -23 289 6 9996 138 66 57 chr12 12870016 12870060 -131412429 + L1M4c LINE L1 1854 1896 -4488 1987 117 13 16 chr12 12870060 12870369 -131412120 - AluY SINE Alu -3 308 1 2332 75 7 0 chr12 12870370 12870665 -131411824 - AluSx SINE Alu -15 297 1 9996 138 66 57 chr12 12870665 12870696 -131411793 + L1M4c LINE L1 1896 1925 -4459 2771 16 0 3 chr12 12870696 12871014 -131411475 - AluYb8 SINE Alu -1 317 1 9996 138 66 57 chr12 12871014 12871144 -131411345 + L1M4c LINE L1 1925 2110 -4274 805 157 0 0 chr12 12871144 12871259 -131411230 + AluJb SINE Alu 2 116 -196 216 100 0 25 chr12 12871315 12871355 -131411134 + (CCG)n Simple_repeat Simple_repeat 3 41 0 198 256 0 0 chr12 12871594 12871672 -131410817 + GA-rich Low_complexity Low_complexity 3 80 0 1195 167 0 9 chr12 12872466 12872702 -131409787 + AluJb SINE Alu 105 338 0 712 206 102 76 chr12 12872707 12872924 -131409565 - MER39 LTR ERV1 -82 625 415 2227 81 7 0 chr12 12872924 12873222 -131409267 - AluSx SINE Alu -12 300 1 712 206 102 76 chr12 12873222 12873442 -131409047 - MER39 LTR ERV1 -292 415 10 345 262 168 0 chr12 12873488 12873637 -131408852 + L1M4 LINE L1 3325 3498 -2648 2108 98 10 3 chr12 12874104 12874399 -131408090 + AluSc SINE Alu 1 297 -12 1735 132 0 14 chr12 12874574 12874854 -131407635 - AluSq SINE Alu -6 307 32 486 236 57 8 chr12 12874954 12875077 -131407412 - FLAM_A SINE Alu -4 129 1 182 250 0 23 chr12 12875122 12875166 -131407323 + MIR SINE MIR 213 255 -7 758 169 0 29 chr12 12876052 12876188 -131406301 - AluJb SINE Alu -26 286 155 30 0 0 0 chr12 12877225 12877255 -131405234 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr12 12879620 12879655 -131402834 + AT_rich Low_complexity Low_complexity 1 35 0 477 0 0 0 chr12 12880267 12880320 -131402169 + (TA)n Simple_repeat Simple_repeat 2 54 0 510 92 53 0 chr12 12882810 12882886 -131399603 + HY1 scRNA scRNA 33 112 0 1538 126 0 9 chr12 12882904 12883134 -131399355 + AluJo SINE Alu 81 308 -4 2309 84 7 7 chr12 12884368 12884666 -131397823 + AluSq SINE Alu 1 298 -15 27 0 0 0 chr12 12884946 12884973 -131397516 + AT_rich Low_complexity Low_complexity 1 27 0 761 316 105 32 chr12 12888289 12888850 -131393639 + L2 LINE L2 1762 2363 -951 196 382 141 5 chr12 12889060 12889259 -131393230 + L2 LINE L2 2403 2628 -686 317 259 71 0 chr12 12889259 12889344 -131393145 - MER112 DNA MER1_type -12 248 158 2391 72 3 0 chr12 12889829 12890120 -131392369 - AluSg SINE Alu -12 298 7 197 232 71 89 chr12 12890271 12890383 -131392106 - MIR SINE MIR -27 235 126 352 159 14 58 chr12 12890383 12890452 -131392037 + AluJ/FLAM SINE Alu 22 87 -215 2396 89 3 0 chr12 12890458 12890762 -131391727 - AluSx SINE Alu -7 305 1 2653 42 0 3 chr12 12891374 12891684 -131390805 - AluY SINE Alu -2 309 1 1777 219 75 38 chr12 12892700 12893207 -131389282 + Charlie1a DNA MER1_type 7 532 -923 2147 119 127 21 chr12 12893512 12893899 -131388590 + MSTA LTR MaLR 1 428 0 469 138 58 0 chr12 12894141 12894228 -131388261 - L1MB3 LINE L1 -13 6170 6079 1090 142 71 14 chr12 12895072 12895284 -131387205 + L1MA7 LINE L1 5773 5996 -295 265 222 28 14 chr12 12895583 12895655 -131386834 + GA-rich Low_complexity Low_complexity 3 75 0 1321 167 0 0 chr12 12895720 12895988 -131386501 - AluSg/x SINE Alu 0 348 81 28 0 0 0 chr12 12896076 12896104 -131386385 + AT_rich Low_complexity Low_complexity 1 28 0 2130 118 3 10 chr12 12896179 12896485 -131386004 + AluSx SINE Alu 1 304 -8 200 146 21 62 chr12 12897561 12897609 -131384880 - MIR SINE MIR -38 224 179 2124 112 0 26 chr12 12898157 12898460 -131384029 + AluSx SINE Alu 1 295 -17 433 263 233 25 chr12 12899251 12899491 -131382998 - L3 LINE CR1 -63 1514 1225 603 239 94 91 chr12 12899641 12899718 -131382771 + HAL1 LINE L1 14 89 -2418 1912 156 13 0 chr12 12899718 12900026 -131382463 + AluJb SINE Alu 1 312 0 603 239 94 91 chr12 12900026 12900300 -131382189 + HAL1 LINE L1 89 366 -2141 1073 236 128 33 chr12 12900317 12900834 -131381655 + HAL1 LINE L1 802 1367 -1140 2145 115 0 0 chr12 12900882 12901178 -131381311 - AluSg SINE Alu -14 296 1 304 256 39 31 chr12 12901268 12901397 -131381092 + L1M4 LINE L1 3960 4089 -2057 321 328 0 35 chr12 12901397 12901513 -131380976 + GA-rich Low_complexity Low_complexity 6 117 0 800 270 192 57 chr12 12901516 12902510 -131379979 + HAL1 LINE L1 1380 2507 0 1868 258 116 35 chr12 12902849 12904104 -131378385 + L1M4 LINE L1 3589 5093 -1053 531 130 71 110 chr12 12904108 12904262 -131378227 - L1PB4 LINE L1 0 6156 6009 559 271 53 14 chr12 12904265 12904472 -131378017 + L1M4 LINE L1 5084 5298 -848 427 91 0 91 chr12 12904497 12904574 -131377915 - AluJ/FRAM SINE Alu -24 288 219 1908 161 13 3 chr12 12904639 12904937 -131377552 + AluJo SINE Alu 2 302 -10 2811 59 14 0 chr12 12904989 12905345 -131377144 + L1PA6 LINE L1 5792 6152 -2 264 115 16 33 chr12 12905776 12905837 -131376652 + (TCCC)n Simple_repeat Simple_repeat 4 63 0 2144 120 6 16 chr12 12905892 12906208 -131376281 - AluSq SINE Alu 0 313 1 491 307 110 20 chr12 12906424 12906724 -131375765 - L1ME LINE L1 -399 5722 5396 1790 88 118 8 chr12 12907148 12907410 -131375079 + AluSc SINE Alu 2 292 -17 1793 171 0 11 chr12 12907968 12908255 -131374234 + AluJo SINE Alu 3 286 -26 222 248 0 0 chr12 12908255 12908380 -131374109 + (TA)n Simple_repeat Simple_repeat 2 126 0 983 186 52 9 chr12 12909782 12909992 -131372497 + MER20 DNA MER1_type 1 219 0 646 301 136 11 chr12 12911365 12911651 -131370838 - L3 LINE CR1 -872 705 384 286 298 126 10 chr12 12911769 12911902 -131370587 + MIR SINE MIR 42 185 -61 38 51 0 0 chr12 12911942 12912001 -131370488 + AT_rich Low_complexity Low_complexity 1 59 0 844 97 9 0 chr12 12912001 12912114 -131370375 - FLAM_C SINE Alu -25 118 5 25 0 0 0 chr12 12912118 12912143 -131370346 + AT_rich Low_complexity Low_complexity 1 25 0 2318 105 48 0 chr12 12912280 12912613 -131369876 + THE1A LTR MaLR 1 349 -6 1906 105 0 0 chr12 12912613 12912861 -131369628 - AluSg SINE Alu -62 248 1 649 189 0 0 chr12 12913483 12913594 -131368895 + FLAM_C SINE Alu 1 111 -32 577 315 115 0 chr12 12914200 12914365 -131368124 + MER91A DNA MER1_type 1 184 -12 1214 284 160 7 chr12 12914386 12914812 -131367677 + L2 LINE L2 2805 3295 -18 702 233 0 0 chr12 12914860 12914993 -131367496 + FLAM_A SINE Alu 1 133 0 180 283 0 0 chr12 12915144 12915190 -131367299 - MIR SINE MIR -112 150 105 2066 128 0 0 chr12 12915190 12915495 -131366994 + AluSx SINE Alu 1 305 0 223 274 0 0 chr12 12916093 12916144 -131366345 - MIR SINE MIR -148 114 64 941 266 26 117 chr12 12916178 12916814 -131365675 - L2 LINE L2 0 3313 2748 492 300 140 30 chr12 12916809 12917109 -131365380 + L2 LINE L2 1769 2101 -1213 * 593 221 23 81 chr12 12917177 12917349 -131365140 + MER58A DNA MER1_type 16 177 -47 218 299 165 10 chr12 12917367 12917464 -131365025 + L2 LINE L2 2158 2269 -1045 442 261 109 33 chr12 12917489 12917673 -131364816 + L2 LINE L2 2448 2645 -669 509 237 37 15 chr12 12917697 12917832 -131364657 - MIR SINE MIR -60 202 65 1670 179 7 3 chr12 12918603 12918888 -131363601 - AluJo SINE Alu -14 298 13 23 54 0 0 chr12 12920249 12920286 -131362203 + AT_rich Low_complexity Low_complexity 1 37 0 315 277 41 49 chr12 12920938 12921066 -131361423 - MIR SINE MIR -67 141 49 2127 110 0 17 chr12 12921546 12921847 -131360642 - AluSg SINE Alu -14 296 1 211 292 44 71 chr12 12923176 12923258 -131359231 - MIR SINE MIR -34 228 148 2159 119 0 3 chr12 12923258 12923553 -131358936 - AluSx SINE Alu -18 294 1 211 292 44 71 chr12 12923553 12923583 -131358906 - MIR SINE MIR -114 148 119 2275 85 7 0 chr12 12924128 12924422 -131358067 + AluSg SINE Alu 1 296 -14 324 0 0 0 chr12 12925196 12925232 -131357257 + (A)n Simple_repeat Simple_repeat 1 36 0 1601 181 4 8 chr12 12927092 12927357 -131355132 + AluJo SINE Alu 1 264 -48 2399 65 0 3 chr12 12927640 12927931 -131354558 + AluSc SINE Alu 3 292 -17 22 70 0 0 chr12 12928122 12928165 -131354324 + AT_rich Low_complexity Low_complexity 1 43 0 908 217 95 70 chr12 12929044 12929223 -131353266 - MER46C DNA MER2_type -1 337 144 2133 109 3 0 chr12 12929223 12929536 -131352953 + AluSq SINE Alu 1 314 0 908 217 95 70 chr12 12929536 12929682 -131352807 - MER46C DNA MER2_type -194 144 3 886 181 34 124 chr12 12930229 12930343 -131352146 - MER33 DNA MER1_type -2261 324 201 1852 134 15 0 chr12 12930343 12930612 -131351877 + AluSx SINE Alu 15 287 -25 886 181 34 124 chr12 12930612 12930851 -131351638 - MER33 DNA MER1_type -2384 201 3 369 0 0 0 chr12 12931068 12931109 -131351380 + (CA)n Simple_repeat Simple_repeat 1 41 0 2226 84 0 20 chr12 12931511 12931848 -131350641 + AluY SINE Alu 1 331 0 1741 181 0 10 chr12 12933621 12933919 -131348570 - AluJb SINE Alu -17 295 1 700 137 14 72 chr12 12933919 12934058 -131348431 - AluJo SINE Alu -177 135 5 2204 105 7 0 chr12 12934391 12934687 -131347802 - AluSx SINE Alu -14 298 1 2208 120 0 0 chr12 12935383 12935684 -131346805 + AluSx SINE Alu 1 301 -11 2160 98 6 28 chr12 12935684 12936038 -131346451 + AluY SINE Alu 1 311 0 2341 86 7 0 chr12 12937120 12937422 -131345067 - AluSq SINE Alu -9 304 1 285 128 0 0 chr12 12938154 12938201 -131344288 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 223 128 51 0 chr12 12938281 12938320 -131344169 + (TATG)n Simple_repeat Simple_repeat 2 42 0 294 147 0 0 chr12 12939640 12939708 -131342781 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 186 43 0 0 chr12 12940514 12940537 -131341952 + (T)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chr12 12941797 12941827 -131340662 + AT_rich Low_complexity Low_complexity 1 30 0 610 176 0 44 chr12 12942126 12942262 -131340227 + L1MB7 LINE L1 6044 6173 -11 362 251 301 10 chr12 12942362 12942561 -131339928 + MIR SINE MIR 6 262 0 207 0 0 0 chr12 12944666 12944689 -131337800 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1751 155 41 14 chr12 12945289 12945580 -131336909 + AluJb SINE Alu 1 299 -13 2296 88 3 10 chr12 12946117 12946423 -131336066 - AluSq SINE Alu -9 304 1 1883 133 4 4 chr12 12946659 12946930 -131335559 - AluSx SINE Alu -15 297 27 1003 92 0 0 chr12 12946935 12947066 -131335423 - AluSg/x SINE Alu -12 300 170 2418 71 3 7 chr12 12948206 12948514 -131333975 + AluSg1 SINE Alu 1 307 -2 213 279 0 33 chr12 12948625 12948686 -131333803 + GA-rich Low_complexity Low_complexity 2 60 0 256 293 194 31 chr12 12949423 12949614 -131332875 + MIR SINE MIR 11 232 -30 2267 96 3 3 chr12 12949785 12950077 -131332412 - AluSx SINE Alu -20 292 1 25 65 0 0 chr12 12952124 12952170 -131330319 + AT_rich Low_complexity Low_complexity 1 46 0 4822 253 84 31 chr12 12952212 12954521 -131327968 + L1MEc LINE L1 1734 4109 -2106 376 257 36 117 chr12 12954535 12954757 -131327732 - L1ME3 LINE L1 0 6162 5959 6376 141 28 5 chr12 12954878 12956872 -131325617 - L1MA5A LINE L1 -7 6290 4255 1837 230 93 58 chr12 12956961 12957683 -131324806 - L1MC5 LINE L1 -541 7420 6674 1486 147 4 9 chr12 12958038 12958269 -131324220 + AluJb SINE Alu 1 230 -82 1529 129 28 0 chr12 12958274 12958491 -131323998 - AluSq SINE Alu -88 225 3 2321 97 3 0 chr12 12958799 12959098 -131323391 - AluSx SINE Alu 0 312 13 28 29 0 0 chr12 12959167 12959202 -131323287 + AT_rich Low_complexity Low_complexity 1 35 0 2419 90 0 3 chr12 12959960 12960271 -131322218 + AluSg SINE Alu 1 310 0 232 237 13 53 chr12 12961466 12961542 -131320947 + (CTATT)n Simple_repeat Simple_repeat 4 76 0 616 229 137 44 chr12 12962481 12962539 -131319950 + MER58A DNA MER1_type 1 52 -2368 1705 172 4 4 chr12 12962539 12962846 -131319643 + AluJb SINE Alu 3 309 0 616 229 137 44 chr12 12962846 12962990 -131319499 + MER58A DNA MER1_type 52 224 0 382 204 94 105 chr12 12963053 12963234 -131319255 - MER20B DNA MER1_type -604 179 1 2102 113 0 11 chr12 12963761 12964079 -131318410 + AluSc SINE Alu 1 315 0 1457 267 47 64 chr12 12964135 12964779 -131317710 + L1MC4 LINE L1 7168 7800 -242 400 77 0 0 chr12 12964917 12964969 -131317520 + Alu SINE Alu 1 52 -247 2200 70 20 37 chr12 12964969 12965268 -131317221 + AluSq SINE Alu 20 313 0 2046 115 39 16 chr12 12965323 12965628 -131316861 + AluSx SINE Alu 1 312 0 499 280 80 14 chr12 12965841 12966045 -131316444 - MIR SINE MIR -23 239 27 1671 184 78 0 chr12 12966173 12966493 -131315996 + MER7A DNA MER2_type 3 345 -1 2500 63 0 3 chr12 12966537 12966840 -131315649 + AluY SINE Alu 1 302 -9 707 185 7 41 chr12 12966903 12967049 -131315440 + FLAM_C SINE Alu 1 141 -2 380 310 53 53 chr12 12967229 12967508 -131314981 + L1M4b LINE L1 97 804 -6055 1622 118 0 65 chr12 12967515 12967778 -131314711 + AluSc SINE Alu 3 248 -61 228 35 0 0 chr12 12967797 12967826 -131314663 + (TAA)n Simple_repeat Simple_repeat 2 30 0 251 233 83 42 chr12 12968237 12968357 -131314132 + L1M4b LINE L1 1239 1363 -5496 * 869 208 93 45 chr12 12968337 12968687 -131313802 + L1ME2 LINE L1 5774 6161 -5 213 315 41 14 chr12 12968730 12968803 -131313686 + L2 LINE L2 3015 3089 -183 257 374 169 24 chr12 12970021 12970358 -131312131 - L2 LINE L2 -25 3247 2862 2002 126 0 24 chr12 12971431 12971725 -131310764 + AluSg SINE Alu 1 287 -23 331 246 60 90 chr12 12972383 12972517 -131309972 + L2 LINE L2 3169 3298 -15 38 22 0 0 chr12 12973538 12973583 -131308906 + AT_rich Low_complexity Low_complexity 1 45 0 2001 174 107 9 chr12 12975014 12975433 -131307056 + LOR1b LTR ERV1 1 460 -1 853 94 0 0 chr12 12975692 12975825 -131306664 - AluSq SINE Alu 0 310 178 879 40 0 0 chr12 12975826 12975927 -131306562 - AluSq SINE Alu -212 101 1 2188 101 7 0 chr12 12976006 12976293 -131306196 + AluSq SINE Alu 1 289 -24 292 313 78 57 chr12 12976673 12976865 -131305624 - L2 LINE L2 -702 2612 2417 183 80 0 0 chr12 12976933 12976958 -131305531 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 206 103 51 0 chr12 12977096 12977135 -131305354 + C-rich Low_complexity Low_complexity 1 41 0 3612 136 4 2 chr12 12977327 12977851 -131304638 + MER1A DNA MER1_type 3 527 0 2391 206 70 39 chr12 12977885 12978469 -131304020 + L1M4 LINE L1 4714 5278 -896 1565 187 3 18 chr12 12978469 12978796 -131303693 + AluJo SINE Alu 3 325 0 2391 206 70 39 chr12 12978796 12978959 -131303530 + L1M4 LINE L1 5278 5477 -697 814 196 0 25 chr12 12978959 12979122 -131303367 + FRAM SINE Alu 1 159 -7 2391 206 70 39 chr12 12979122 12979233 -131303256 + L1M4 LINE L1 5477 5583 -591 840 74 9 0 chr12 12979233 12979341 -131303148 + AluSq/x SINE Alu 1 109 -203 364 182 0 0 chr12 12979344 12979410 -131303079 + Alu SINE Alu 228 293 -7 2155 92 10 7 chr12 12979474 12979779 -131302710 - AluSc SINE Alu -3 306 1 239 299 7 118 chr12 12979948 12980092 -131302397 + LTR67 LTR ERVL 24 151 -406 2133 124 0 3 chr12 12980281 12980580 -131301909 + AluSx SINE Alu 1 298 -14 480 250 94 44 chr12 12980681 12980861 -131301628 + LTR67 LTR ERVL 362 550 -7 1976 158 0 3 chr12 12980866 12981176 -131301313 - AluJb SINE Alu -3 309 1 583 264 11 51 chr12 12981782 12981960 -131300529 - MER5B DNA MER1_type -7 171 1 2404 84 3 6 chr12 12982560 12982871 -131299618 + AluSx SINE Alu 1 310 -2 745 108 20 0 chr12 12982887 12982989 -131299500 - Tigger7 DNA MER2_type -19 2568 2465 2441 158 17 52 chr12 12984019 12984539 -131297950 - L1MC3 LINE L1 -1203 6582 6081 2050 93 0 28 chr12 12985199 12985488 -131297001 + AluSx SINE Alu 1 281 -31 2737 263 70 58 chr12 12985510 12985872 -131296617 + L1MCa LINE L1 46 402 -6024 2118 125 0 0 chr12 12985872 12986161 -131296328 + AluSx SINE Alu 7 295 -17 2737 263 70 58 chr12 12986161 12986963 -131295526 + L1MCa LINE L1 402 1223 -5203 7828 154 136 54 chr12 12987126 12987482 -131295007 + L1MCa LINE L1 51 376 -6050 2135 124 0 0 chr12 12987482 12987773 -131294716 + AluSx SINE Alu 7 297 -15 7828 154 136 54 chr12 12987773 12988560 -131293929 + L1MCa LINE L1 376 1097 -5329 649 146 39 0 chr12 12988560 12988663 -131293826 + U6 snRNA snRNA 1 107 0 7828 154 136 54 chr12 12988663 12989286 -131293203 + L1MCa LINE L1 1097 1991 -4435 2303 110 0 3 chr12 12989286 12989595 -131292894 - AluSq SINE Alu -5 308 1 7828 154 136 54 chr12 12989595 12989743 -131292746 + L1MCa LINE L1 1991 2125 -4301 249 153 51 51 chr12 12989742 12989801 -131292688 + L1MC1 LINE L1 6275 6333 0 * 1935 119 31 7 chr12 12989975 12990269 -131292220 + AluSx SINE Alu 1 301 -11 2038 123 32 41 chr12 12990400 12990740 -131291749 + MER1B DNA MER1_type 1 337 0 2300 113 3 0 chr12 12990975 12991286 -131291203 + AluSp SINE Alu 1 312 -1 1147 261 98 89 chr12 12992577 12992787 -131289702 + L1MEd LINE L1 1 208 -5911 2451 91 0 0 chr12 12992787 12993095 -131289394 + AluSg SINE Alu 1 308 -2 1147 261 98 89 chr12 12993095 12993443 -131289046 + L1MEd LINE L1 208 564 -5555 236 189 38 0 chr12 12993489 12993509 -131288980 + AluSp SINE Alu 115 136 -167 247 154 0 0 chr12 12993509 12993548 -131288941 + Alu SINE Alu 2 40 -262 1743 170 55 0 chr12 12993625 12993914 -131288575 + AluJb SINE Alu 7 311 -1 347 133 50 0 chr12 12993914 12993974 -131288515 + L1ME2 LINE L1 6092 6154 -10 2276 97 0 3 chr12 12993988 12994287 -131288202 + AluY SINE Alu 1 298 -13 560 293 78 34 chr12 12994290 12994611 -131287878 + L1MEd LINE L1 563 897 -5222 286 273 86 78 chr12 12994931 12995074 -131287415 + L1MC5 LINE L1 7262 7402 -559 2257 100 0 3 chr12 12995074 12995365 -131287124 + AluY SINE Alu 3 292 -19 286 273 86 78 chr12 12995365 12995733 -131286756 + L1MC5 LINE L1 7402 7777 -184 659 196 43 0 chr12 12995753 12995891 -131286598 + L1MC4a LINE L1 5732 5875 -1933 2225 99 10 0 chr12 12995894 12996187 -131286302 + AluSp SINE Alu 1 296 -17 1180 125 0 0 chr12 12996187 12996347 -131286142 + AluSg/x SINE Alu 134 293 -19 263 209 35 23 chr12 12996347 12996433 -131286056 + L1MC4a LINE L1 5869 5955 -1853 2148 111 17 0 chr12 12996437 12996726 -131285763 + AluSg SINE Alu 1 294 -16 684 236 8 44 chr12 12996761 12997011 -131285478 + L1MC4a LINE L1 5930 6170 -1638 * 2485 178 20 102 chr12 12997004 12997334 -131285155 + L1MC4a LINE L1 6379 6734 -1074 2421 80 3 3 chr12 12997334 12997646 -131284843 + AluSp SINE Alu 1 312 -1 2485 178 20 102 chr12 12997646 12997830 -131284659 + L1MC4a LINE L1 6734 6831 -977 2276 56 0 7 chr12 12997830 12998148 -131284341 + AluY SINE Alu 1 316 0 2485 178 20 102 chr12 12998148 12998289 -131284200 + L1MC4a LINE L1 6831 6982 -826 2936 188 149 38 chr12 12998296 12999055 -131283434 - MER21B LTR ERV1 -2 861 19 535 149 11 11 chr12 12999080 12999167 -131283322 - MER21B LTR ERV1 -776 87 1 3149 198 84 19 chr12 12999167 12999936 -131282553 + L1MC4a LINE L1 6978 7796 -12 443 272 95 43 chr12 12999994 13000680 -131281809 + L1MEd LINE L1 910 1668 -4517 250 268 0 73 chr12 13000941 13001023 -131281466 + MIR3 SINE MIR 117 192 -16 205 167 0 0 chr12 13001914 13001950 -131280539 + (CA)n Simple_repeat Simple_repeat 2 37 0 2268 82 3 0 chr12 13002178 13002486 -131280003 + AluY SINE Alu 1 309 0 21 0 0 0 chr12 13003338 13003359 -131279130 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 13005228 13005250 -131277239 + AT_rich Low_complexity Low_complexity 1 22 0 840 110 8 39 chr12 13005518 13005645 -131276844 + AluJb SINE Alu 3 125 -187 1133 135 0 0 chr12 13005648 13005804 -131276685 - AluSg/x SINE Alu -23 289 134 835 197 13 7 chr12 13005822 13005974 -131276515 + AluJb SINE Alu 135 287 -25 2392 214 56 62 chr12 13006770 13007485 -131275004 + L1ME1 LINE L1 5452 6162 -4 877 174 38 80 chr12 13007745 13007883 -131274606 + MER3 DNA MER1_type 6 133 -76 2328 87 0 13 chr12 13007883 13008193 -131274296 - AluSq SINE Alu -7 306 1 877 174 38 80 chr12 13008193 13008266 -131274223 + MER3 DNA MER1_type 133 208 -1 1374 129 188 28 chr12 13008317 13008572 -131273917 + AluJo SINE Alu 1 296 -16 224 294 0 15 chr12 13009478 13009546 -131272943 - L3 LINE CR1 -23 1554 1488 2694 36 3 0 chr12 13010358 13010666 -131271823 - AluY SINE Alu -2 309 1 567 0 0 0 chr12 13011558 13011621 -131270868 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 212 361 130 25 chr12 13011734 13012019 -131270470 + L2 LINE L2 2350 2664 -650 2110 117 3 0 chr12 13012518 13012808 -131269681 - AluSx SINE Alu -21 291 1 2085 130 3 7 chr12 13012811 13013118 -131269371 - AluSx SINE Alu -6 306 1 2266 97 0 16 chr12 13013243 13013554 -131268935 - AluY SINE Alu -5 306 1 817 222 53 76 chr12 13013565 13013764 -131268725 + MER31-int LTR ERV1 2457 2659 -2277 1530 156 30 86 chr12 13013764 13014065 -131268424 - AluJo SINE Alu -22 290 7 817 222 53 76 chr12 13014065 13014411 -131268078 + MER31-int LTR ERV1 2659 3025 -1911 2128 123 3 0 chr12 13014869 13015171 -131267318 + AluSx SINE Alu 1 303 -9 2387 40 4 0 chr12 13015312 13015584 -131266905 - L1PA5 LINE L1 -1 6153 5881 4138 188 50 59 chr12 13015618 13015748 -131266741 + MER31-int LTR ERV1 3171 3301 -1635 2098 138 3 3 chr12 13015748 13016060 -131266429 + AluJb SINE Alu 1 312 0 4138 188 50 59 chr12 13016060 13016963 -131265526 + MER31-int LTR ERV1 3301 4195 -741 1030 260 46 65 chr12 13017023 13017439 -131265050 + MER92A LTR ERV1 1 408 -4 1971 132 16 16 chr12 13017453 13017757 -131264732 - AluSx SINE Alu -8 304 1 565 118 20 10 chr12 13018163 13018409 -131264080 + AluJb SINE Alu 1 298 -14 1984 132 11 0 chr12 13018413 13018700 -131263789 + AluSx SINE Alu 1 290 -22 1918 149 92 21 chr12 13018790 13019172 -131263317 + L1MB7 LINE L1 5776 6184 0 2480 53 3 13 chr12 13019183 13019487 -131263002 + AluY SINE Alu 1 301 -10 180 111 0 0 chr12 13019511 13019538 -131262951 + (A)n Simple_repeat Simple_repeat 1 27 0 1860 123 0 83 chr12 13019546 13019871 -131262618 + AluJb SINE Alu 1 298 -14 1461 171 80 11 chr12 13020009 13020284 -131262205 - AluJb SINE Alu -14 298 5 2126 111 0 3 chr12 13020879 13021168 -131261321 + AluSx SINE Alu 14 301 -11 23 0 0 0 chr12 13021586 13021609 -131260880 + AT_rich Low_complexity Low_complexity 1 23 0 2395 62 3 3 chr12 13021983 13022287 -131260202 + AluY SINE Alu 1 304 -7 228 273 292 13 chr12 13022505 13022659 -131259830 - MIR SINE MIR 0 262 66 2357 43 60 0 chr12 13023025 13023306 -131259183 + AluY SINE Alu 1 298 -13 538 178 10 10 chr12 13023486 13023587 -131258902 + MER103 DNA DNA 15 115 -51 185 268 196 0 chr12 13023606 13023662 -131258827 - MIR SINE MIR -112 96 30 2357 86 0 13 chr12 13023847 13023983 -131258506 + AluSx SINE Alu 1 137 -175 2170 138 0 0 chr12 13023983 13024295 -131258194 + AluSx SINE Alu 1 312 0 2357 86 0 13 chr12 13024295 13024460 -131258029 + AluSx SINE Alu 137 298 -14 287 333 139 0 chr12 13024610 13024718 -131257771 + L2 LINE L2 3150 3272 0 196 385 74 7 chr12 13024722 13024857 -131257632 + MIR3 SINE MIR 58 201 -7 2347 87 0 35 chr12 13024858 13025169 -131257320 + AluSp SINE Alu 1 300 -13 1984 69 91 4 chr12 13025180 13025454 -131257035 + AluY SINE Alu 1 298 -13 1566 177 34 0 chr12 13025466 13025731 -131256758 + AluJb SINE Alu 20 293 -19 1290 153 85 85 chr12 13025748 13026043 -131256446 + AluJo SINE Alu 1 295 -17 291 338 40 14 chr12 13026148 13026296 -131256193 - MIR SINE MIR -64 198 47 301 268 12 0 chr12 13028418 13028500 -131253989 + C-rich Low_complexity Low_complexity 1 83 0 21 0 0 0 chr12 13028773 13028794 -131253695 + GC_rich Low_complexity Low_complexity 1 21 0 406 277 36 32 chr12 13029990 13030187 -131252302 - MIR SINE MIR -51 211 20 2241 83 0 19 chr12 13030361 13030673 -131251816 + AluSg SINE Alu 1 306 -4 396 212 94 0 chr12 13030678 13030763 -131251726 + MER69 DNA AcHobo 47 139 -1087 353 91 0 0 chr12 13030798 13030842 -131251647 + MER69 DNA AcHobo 2482 2525 -1 2578 55 0 0 chr12 13030869 13031180 -131251309 + AluY SINE Alu 1 311 0 2304 104 3 0 chr12 13031304 13031611 -131250878 - AluSp SINE Alu -5 308 1 203 214 18 18 chr12 13031666 13031722 -131250767 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 359 333 31 0 chr12 13031938 13032034 -131250455 - L2 LINE L2 -25 3247 3149 2033 156 0 0 chr12 13032080 13032387 -131250102 + AluJb SINE Alu 2 308 -4 952 161 0 0 chr12 13032442 13032591 -131249898 + AluSg/x SINE Alu 137 285 -27 217 0 0 0 chr12 13032591 13032615 -131249874 + (CAAAA)n Simple_repeat Simple_repeat 2 100 0 188 419 50 15 chr12 13032618 13032816 -131249673 - L2 LINE L2 -236 3036 2832 2078 128 0 0 chr12 13033161 13033466 -131249023 + AluSx SINE Alu 1 305 -7 2353 66 0 7 chr12 13033466 13033769 -131248720 + AluY SINE Alu 1 301 -10 2263 74 7 16 chr12 13033792 13034102 -131248387 + AluSq SINE Alu 1 307 -6 2232 78 3 3 chr12 13034305 13034601 -131247888 + AluSx SINE Alu 1 296 -16 268 300 146 80 chr12 13034694 13035057 -131247432 - L2 LINE L2 -1410 1904 1518 476 204 10 19 chr12 13035125 13035228 -131247261 + MER69 DNA AcHobo 47 148 -2378 254 185 49 37 chr12 13035220 13035301 -131247188 + MER69 DNA AcHobo 2444 2525 -1 * 275 296 71 53 chr12 13035347 13035516 -131246973 - L2 LINE L2 -1890 1424 1253 1888 97 3 121 chr12 13035586 13035925 -131246564 - AluSg SINE Alu -1 299 1 2137 90 27 0 chr12 13035938 13036239 -131246250 - AluY SINE Alu -2 309 1 777 138 0 90 chr12 13036251 13036396 -131246093 - AluSq/x SINE Alu -179 133 2 2247 99 3 0 chr12 13036512 13036824 -131245665 + AluSp SINE Alu 1 313 0 2120 122 0 3 chr12 13037082 13037393 -131245096 + AluSg SINE Alu 1 310 0 379 210 0 0 chr12 13037410 13037491 -131244998 + L1MD3 LINE L1 6446 6526 -1469 4776 226 55 52 chr12 13037512 13037806 -131244683 + L1M4 LINE L1 4 296 -6279 2558 135 36 7 chr12 13037806 13038220 -131244269 - MSTB LTR MaLR 0 426 1 4776 226 55 52 chr12 13038220 13038675 -131243814 + L1M4 LINE L1 296 748 -5827 2044 117 0 7 chr12 13038675 13038973 -131243516 + AluSc SINE Alu 1 296 -13 4776 226 55 52 chr12 13038973 13039425 -131243064 + L1M4 LINE L1 748 1198 -5377 2148 125 0 0 chr12 13039425 13039728 -131242761 + AluSx SINE Alu 1 303 -9 4776 226 55 52 chr12 13039728 13040119 -131242370 + L1M4 LINE L1 1198 1587 -4988 1946 130 0 27 chr12 13040119 13040419 -131242070 - AluSx SINE Alu -20 292 1 4776 226 55 52 chr12 13040419 13040464 -131242025 + L1M4 LINE L1 1587 2050 -4525 640 219 77 41 chr12 13040466 13040662 -131241827 + L1MC4 LINE L1 6523 6725 -1317 417 183 0 0 chr12 13040665 13040736 -131241753 - LTR16B LTR ERVL 0 464 394 1726 232 124 7 chr12 13040743 13041161 -131241328 + MLT1F LTR MaLR 11 477 -65 1265 121 25 107 chr12 13041163 13041232 -131241257 - Tigger2 DNA MER2_type 0 2718 2645 1950 106 0 56 chr12 13041232 13041401 -131241088 - AluSx SINE Alu -18 294 148 2097 112 0 0 chr12 13041401 13041697 -131240792 - AluSc SINE Alu -13 296 1 1950 106 0 56 chr12 13041697 13041829 -131240660 - AluSx SINE Alu -164 148 10 1265 121 25 107 chr12 13041829 13042040 -131240449 - Tigger2 DNA MER2_type -73 2645 2461 4802 139 5 4 chr12 13042102 13042850 -131239639 - Tigger2 DNA MER2_type -1969 749 1 326 121 17 17 chr12 13042853 13042911 -131239578 + MLT1F LTR MaLR 484 541 -1 1377 259 39 19 chr12 13042915 13043278 -131239211 - LTR16B LTR ERVL -94 370 1 1794 176 6 36 chr12 13043281 13043339 -131239150 + L1MC4 LINE L1 6727 6785 -1257 2207 100 0 3 chr12 13043339 13043639 -131238850 - AluSq SINE Alu -14 299 1 1794 176 6 36 chr12 13043639 13043937 -131238552 + L1MC4 LINE L1 6785 7072 -970 255 61 0 0 chr12 13043942 13043975 -131238514 + (CATA)n Simple_repeat Simple_repeat 2 34 0 2234 246 47 4 chr12 13044021 13044557 -131237932 + L1MC4 LINE L1 7345 7903 -139 681 131 0 9 chr12 13045470 13045577 -131236912 + MER20 DNA MER1_type 39 144 -75 392 335 38 24 chr12 13045606 13045893 -131236596 + AluJb SINE Alu 1 291 -11 229 296 161 0 chr12 13046136 13046217 -131236272 - L2 LINE L2 -12 3301 3208 1537 150 7 25 chr12 13046241 13046515 -131235974 + AluJo SINE Alu 1 269 -43 1101 211 0 18 chr12 13046560 13046778 -131235711 - AluSq SINE Alu -99 214 1 328 268 0 0 chr12 13046778 13046849 -131235640 + AluJ/FRAM SINE Alu 221 291 -11 1232 193 35 48 chr12 13046855 13047171 -131235318 + AluJb SINE Alu 1 312 0 274 228 173 55 chr12 13047439 13047566 -131234923 - L2 LINE L2 -4 3309 3168 1865 94 8 4 chr12 13047599 13047853 -131234636 - AluSc SINE Alu -54 255 1 1321 78 152 0 chr12 13047853 13048003 -131234486 + MLT2A1 LTR ERVL 225 411 -33 468 0 0 0 chr12 13048003 13048055 -131234434 + (TA)n Simple_repeat Simple_repeat 2 53 0 1321 78 152 0 chr12 13048055 13048095 -131234394 + MLT2A1 LTR ERVL 411 444 0 2190 102 0 13 chr12 13048120 13048423 -131234066 + AluSq SINE Alu 1 299 -14 211 154 26 0 chr12 13048424 13048463 -131234026 - MIR SINE MIR -107 155 116 570 237 36 0 chr12 13048819 13048958 -131233531 - Charlie4a DNA MER1_type -9 499 356 4844 160 44 43 chr12 13048973 13049078 -131233411 + L1MC2 LINE L1 4461 4564 -1780 2246 65 7 0 chr12 13049078 13049368 -131233121 + AluY SINE Alu 1 292 -19 4844 160 44 43 chr12 13049368 13050101 -131232388 + L1MC2 LINE L1 4564 5295 -1049 3357 110 60 8 chr12 13050101 13050602 -131231887 - MER1A DNA MER1_type 0 527 1 4844 160 44 43 chr12 13050602 13050865 -131231624 + L1MC2 LINE L1 5295 5556 -788 2245 103 0 13 chr12 13050865 13051175 -131231314 + AluSx SINE Alu 3 308 -4 4844 160 44 43 chr12 13051175 13051786 -131230703 + L1MC2 LINE L1 5556 6155 -189 304 223 204 0 chr12 13051900 13052003 -131230486 - MIR SINE MIR -3 259 136 1053 177 181 7 chr12 13052017 13052294 -131230195 - Charlie4a DNA MER1_type -163 345 21 408 154 0 164 chr12 13053950 13054060 -131228429 + L2 LINE L2 3181 3272 0 2067 111 0 13 chr12 13054677 13054993 -131227496 - AluSx SINE Alu 0 312 1 29 79 0 11 chr12 13055057 13055115 -131227374 + AT_rich Low_complexity Low_complexity 1 59 -29 1685 167 10 35 chr12 13055115 13055291 -131227198 - AluJo SINE Alu -9 303 137 2246 103 0 0 chr12 13055291 13055593 -131226896 - AluSx SINE Alu -8 304 3 1685 167 10 35 chr12 13055593 13055727 -131226762 - AluJo SINE Alu -175 137 1 29 79 0 11 chr12 13055727 13055757 -131226732 + AT_rich Low_complexity Low_complexity 59 88 0 2225 78 0 0 chr12 13055900 13056225 -131226264 + AluY SINE Alu 1 325 0 1703 147 7 25 chr12 13056350 13056635 -131225854 + AluJo SINE Alu 1 280 -32 229 340 81 43 chr12 13056863 13057048 -131225441 - L2 LINE L2 -480 2834 2643 322 262 0 0 chr12 13057275 13057336 -131225153 + MIR SINE MIR 56 116 -146 347 312 40 32 chr12 13057596 13057721 -131224768 + L2 LINE L2 3147 3272 0 1792 134 46 65 chr12 13057749 13058033 -131224456 - L1MB8 LINE L1 -7 6171 5896 2299 63 0 10 chr12 13058033 13058335 -131224154 - AluY SINE Alu -12 299 1 1792 134 46 65 chr12 13058335 13058484 -131224005 - L1MB8 LINE L1 -282 5896 5746 223 336 78 9 chr12 13058712 13058828 -131223661 + L2 LINE L2 2946 3069 -203 2498 49 0 3 chr12 13059100 13059404 -131223085 - AluY SINE Alu -8 303 1 223 230 32 75 chr12 13059827 13059962 -131222527 + MIR SINE MIR 26 198 -64 21 0 0 0 chr12 13060215 13060236 -131222253 + GC_rich Low_complexity Low_complexity 1 21 0 556 151 25 67 chr12 13062361 13062451 -131220038 + FLAM_A SINE Alu 22 107 -204 2218 91 14 0 chr12 13062451 13062748 -131219741 - AluSx SINE Alu -11 301 1 556 151 25 67 chr12 13062748 13062776 -131219713 + FLAM_A SINE Alu 107 135 -176 222 266 64 37 chr12 13062963 13063072 -131219417 + MIR SINE MIR 77 188 -74 2098 119 3 0 chr12 13063168 13063461 -131219028 + AluSg SINE Alu 1 294 -16 1398 167 44 63 chr12 13063479 13063796 -131218693 - AluJb SINE Alu -1 311 1 2130 113 0 0 chr12 13063806 13064107 -131218382 - AluSx SINE Alu -11 301 1 907 286 119 3 chr12 13064495 13064789 -131217700 + L2 LINE L2 2967 3294 -19 1004 83 28 0 chr12 13065503 13065647 -131216842 - L1PA5 LINE L1 0 6154 6007 2110 83 16 35 chr12 13065723 13066037 -131216452 - AluSx SINE Alu -4 308 1 1354 139 109 33 chr12 13066037 13066179 -131216310 - AluSx SINE Alu -7 305 175 210 37 0 0 chr12 13066179 13066206 -131216283 + (TG)n Simple_repeat Simple_repeat 2 28 0 1354 139 109 33 chr12 13066206 13066337 -131216152 - AluSx SINE Alu -137 175 11 702 235 5 80 chr12 13066343 13066543 -131215946 + LTR39 LTR ERV1 599 783 0 2497 56 0 0 chr12 13066888 13067190 -131215299 + AluY SINE Alu 1 302 -9 274 324 78 0 chr12 13067254 13067356 -131215133 - MIR SINE MIR 0 262 153 315 226 12 36 chr12 13067661 13067745 -131214744 + L1MC3 LINE L1 6571 6652 -1133 2176 93 0 3 chr12 13067751 13068041 -131214448 - AluSc SINE Alu -20 289 1 1718 159 9 22 chr12 13068052 13068367 -131214122 - AluJo SINE Alu -1 311 1 1496 147 52 18 chr12 13068708 13068994 -131213495 + AluJb SINE Alu 1 296 -16 405 0 0 0 chr12 13068995 13069040 -131213449 + (CA)n Simple_repeat Simple_repeat 2 46 0 2410 68 0 7 chr12 13069075 13069385 -131213104 - AluY SINE Alu -3 308 1 481 257 192 24 chr12 13069389 13069829 -131212660 - L1ME4a LINE L1 -3 6118 5600 183 80 0 0 chr12 13069881 13069906 -131212583 + (T)n Simple_repeat Simple_repeat 1 25 0 1577 140 53 4 chr12 13069917 13070181 -131212308 - AluSx SINE Alu -4 308 32 608 196 7 20 chr12 13070184 13070337 -131212152 - Charlie1 DNA MER1_type -28 2733 2583 1065 93 0 0 chr12 13070664 13070803 -131211686 + AluSg1 SINE Alu 1 139 -170 2028 128 0 0 chr12 13070803 13071099 -131211390 + AluSx SINE Alu 1 296 -16 237 239 17 40 chr12 13071117 13071234 -131211255 - MIR SINE MIR -56 206 94 373 202 32 32 chr12 13071488 13071582 -131210907 + MER89 LTR ERV1 9 102 -457 1208 181 41 49 chr12 13071583 13071656 -131210833 + MER89 LTR ERV1 272 344 -215 2014 113 31 0 chr12 13071656 13071824 -131210665 - AluSg SINE Alu -8 302 120 180 0 0 0 chr12 13071824 13071844 -131210645 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 2014 113 31 0 chr12 13071844 13071968 -131210521 - AluSg SINE Alu -190 120 1 1208 181 41 49 chr12 13071968 13072160 -131210329 + MER89 LTR ERV1 344 535 -24 266 267 56 72 chr12 13072179 13072359 -131210130 - MIR SINE MIR 0 262 86 1849 147 3 25 chr12 13073227 13073546 -131208943 + AluJo SINE Alu 1 312 0 529 165 0 0 chr12 13073710 13073795 -131208694 - FLAM SINE Alu -19 124 40 3167 77 18 40 chr12 13073885 13074273 -131208216 + MLT2A1 LTR ERVL 1 379 -65 381 93 0 0 chr12 13074273 13074327 -131208162 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 3167 77 18 40 chr12 13074327 13074392 -131208097 + MLT2A1 LTR ERVL 379 444 0 396 151 41 14 chr12 13075195 13075268 -131207221 + AluJb SINE Alu 197 271 -31 322 123 46 0 chr12 13075285 13075350 -131207139 + G-rich Low_complexity Low_complexity 4 71 0 * 852 102 4 49 chr12 13075341 13075626 -131206863 + (GGGGA)n Simple_repeat Simple_repeat 1 271 0 432 299 122 66 chr12 13075986 13076364 -131206125 - L2 LINE L2 -4 3268 2870 192 336 8 55 chr12 13076645 13076773 -131205716 - L2 LINE L2 -791 2523 2402 2141 97 3 7 chr12 13076963 13077262 -131205227 + AluSx SINE Alu 1 298 -14 1871 123 10 10 chr12 13077276 13077569 -131204920 + AluSq SINE Alu 14 306 -7 1769 157 11 0 chr12 13077578 13077884 -131204605 + AluJo SINE Alu 1 309 0 496 185 141 30 chr12 13077999 13078134 -131204355 + MIR SINE MIR 85 234 -28 486 145 40 0 chr12 13078142 13078218 -131204271 - AluY SINE Alu -22 289 211 1237 60 0 0 chr12 13078219 13078369 -131204120 - AluSq/x SINE Alu -162 150 1 606 280 125 57 chr12 13078417 13078785 -131203704 - MLT1L LTR MaLR -32 583 191 1043 160 0 11 chr12 13078985 13079166 -131203323 - AluJb SINE Alu 0 312 134 2041 106 3 0 chr12 13079177 13079485 -131203004 - AluSx SINE Alu 0 309 1 218 290 14 13 chr12 13080227 13080311 -131202178 + GA-rich Low_complexity Low_complexity 1 84 0 209 294 15 59 chr12 13080447 13080515 -131201974 - MIR3 SINE MIR -54 154 90 2198 77 3 0 chr12 13080646 13080931 -131201558 - AluY SINE Alu -25 286 1 2270 58 0 0 chr12 13081082 13081360 -131201129 + AluY SINE Alu 1 278 -33 378 0 0 0 chr12 13081360 13081402 -131201087 + (CA)n Simple_repeat Simple_repeat 1 42 0 2142 107 0 7 chr12 13081979 13082279 -131200210 + AluSg SINE Alu 1 298 -12 852 147 0 0 chr12 13083435 13083564 -131198925 + FLAM_C SINE Alu 1 129 -4 762 179 37 79 chr12 13084804 13084890 -131197599 + MER58 DNA MER1_type 1 89 -252 2032 128 0 13 chr12 13084890 13085196 -131197293 - AluSx SINE Alu -10 302 1 762 179 37 79 chr12 13085196 13085299 -131197190 + MER58 DNA MER1_type 89 182 -159 273 203 68 0 chr12 13085301 13085360 -131197129 + MER58 DNA MER1_type 2358 2420 0 23 55 0 18 chr12 13085406 13085435 -131197054 + AT_rich Low_complexity Low_complexity 1 30 -24 1867 150 3 3 chr12 13085435 13085722 -131196767 - AluJb SINE Alu -25 287 1 23 55 0 18 chr12 13085722 13085747 -131196742 + AT_rich Low_complexity Low_complexity 30 54 0 1615 138 0 90 chr12 13086342 13086675 -131195814 + AluJo SINE Alu 1 303 -9 607 317 92 10 chr12 13087401 13087704 -131194785 + L2 LINE L2 2372 2699 -615 2076 98 0 0 chr12 13087715 13087991 -131194498 - AluSg SINE Alu -11 299 24 182 288 186 0 chr12 13088431 13088490 -131193999 - MIR SINE MIR -109 99 30 927 109 0 29 chr12 13088675 13088812 -131193677 + AluSq/x SINE Alu 1 133 -180 2126 36 0 0 chr12 13088816 13089068 -131193421 + AluY SINE Alu 1 252 -59 1660 225 74 50 chr12 13090406 13090909 -131191580 - LTR33 LTR ERVL -6 515 1 4093 78 11 28 chr12 13091011 13091396 -131191093 - MER41A LTR ERV1 0 554 180 2036 52 3 72 chr12 13091396 13091722 -131190767 - AluSp SINE Alu 0 305 1 4093 78 11 28 chr12 13091722 13091899 -131190590 - MER41A LTR ERV1 -374 180 1 393 261 79 20 chr12 13091899 13092101 -131190388 + L1ME LINE L1 5626 5839 -327 2414 78 0 0 chr12 13092258 13092566 -131189923 + AluSc SINE Alu 1 308 -1 2018 104 0 7 chr12 13092579 13092859 -131189630 + AluSx SINE Alu 20 297 -15 2932 177 18 25 chr12 13092951 13093003 -131189486 - MLT2B3 LTR ERVL 0 554 503 570 98 0 0 chr12 13093003 13093085 -131189404 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 2932 177 18 25 chr12 13093085 13093590 -131188899 - MLT2B3 LTR ERVL -51 503 1 390 329 54 14 chr12 13093634 13093856 -131188633 - L2 LINE L2 -157 3156 2926 1585 174 11 7 chr12 13093867 13094148 -131188341 + AluJo SINE Alu 13 294 -18 352 252 22 0 chr12 13094149 13094288 -131188201 + (TA)n Simple_repeat Simple_repeat 1 142 0 225 136 45 0 chr12 13094325 13094391 -131188098 + (TA)n Simple_repeat Simple_repeat 2 70 0 2094 127 0 0 chr12 13094405 13094705 -131187784 - AluSx SINE Alu -11 301 2 1599 184 32 18 chr12 13094718 13095061 -131187428 - L1MB5 LINE L1 -44 6130 5783 3805 113 18 55 chr12 13095083 13095243 -131187246 - L1MB3 LINE L1 -2 6181 6017 314 45 23 0 chr12 13095243 13095287 -131187202 + (TTA)n Simple_repeat Simple_repeat 2 46 0 2315 63 3 0 chr12 13095287 13095573 -131186916 - AluSp SINE Alu -26 287 1 3805 113 18 55 chr12 13095573 13095948 -131186541 - L1MB3 LINE L1 -165 6018 5673 1599 170 3 29 chr12 13095948 13096254 -131186235 - AluJb SINE Alu -14 298 1 3805 113 18 55 chr12 13096254 13096390 -131186099 - L1MB3 LINE L1 -510 5673 5533 1953 113 7 7 chr12 13096423 13096716 -131185773 - AluSx SINE Alu -19 293 1 376 45 79 135 chr12 13096863 13096952 -131185537 + MLT2B1 LTR ERVL 1 84 -431 1642 232 50 38 chr12 13097278 13097701 -131184788 + MLT2B1 LTR ERVL 85 512 -8 1786 171 0 29 chr12 13097705 13098021 -131184468 + AluJb SINE Alu 1 307 -5 3189 150 51 70 chr12 13098185 13098222 -131184267 + L1MB8 LINE L1 5457 5493 -685 2173 105 0 0 chr12 13098222 13098518 -131183971 + AluSg SINE Alu 1 296 -14 3189 150 51 70 chr12 13098518 13098649 -131183840 + L1MB8 LINE L1 5493 5625 -553 2054 115 7 0 chr12 13098649 13098937 -131183552 + AluSx SINE Alu 1 290 -22 416 35 17 0 chr12 13098938 13098996 -131183493 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 3189 150 51 70 chr12 13098996 13099489 -131183000 + L1MB8 LINE L1 5625 6110 -68 2094 118 3 3 chr12 13099489 13099793 -131182696 - AluSp SINE Alu -9 304 1 3189 150 51 70 chr12 13099793 13099814 -131182675 + L1MB8 LINE L1 6110 6130 -48 894 155 0 0 chr12 13099946 13100094 -131182395 + AluSp/q SINE Alu 157 304 -9 675 125 0 2 chr12 13100131 13100394 -131182095 + AluSx SINE Alu 1 308 -4 649 277 193 51 chr12 13100395 13100753 -131181736 + L2 LINE L2 2782 3221 -92 1693 165 21 3 chr12 13100753 13101044 -131181445 - AluJb SINE Alu -8 304 9 649 277 193 51 chr12 13101044 13101152 -131181337 + L2 LINE L2 3221 3312 -1 1966 110 3 23 chr12 13101219 13101519 -131180970 + AluSx SINE Alu 1 294 -18 2156 76 0 14 chr12 13101521 13101810 -131180679 + AluY SINE Alu 16 300 -11 326 277 183 15 chr12 13102018 13102155 -131180334 + L2 LINE L2 3150 3309 -4 320 98 0 0 chr12 13102196 13102237 -131180252 - 5S rRNA rRNA -79 42 2 336 302 62 8 chr12 13102255 13102384 -131180105 - MARNA DNA Mariner -17 569 434 336 24 0 0 chr12 13103108 13103149 -131179340 + (CA)n Simple_repeat Simple_repeat 1 41 0 1621 181 0 22 chr12 13103483 13103798 -131178691 - AluJo SINE Alu -4 308 1 1854 155 3 0 chr12 13104045 13104342 -131178147 - AluJo SINE Alu -14 298 1 1311 265 87 49 chr12 13105217 13105723 -131176766 - MER21B LTR ERV1 -113 750 226 503 172 0 54 chr12 13105784 13105870 -131176619 - MER21B LTR ERV1 -766 97 15 1684 135 7 40 chr12 13105870 13105936 -131176553 - AluJo SINE Alu -26 286 219 1719 156 0 26 chr12 13105936 13106244 -131176245 + AluSx SINE Alu 1 300 -12 1684 135 7 40 chr12 13106244 13106473 -131176016 - AluJo SINE Alu -93 219 1 229 296 161 0 chr12 13106497 13106578 -131175911 + L2 LINE L2 3208 3301 -12 206 264 44 55 chr12 13106688 13106779 -131175710 + MIR3 SINE MIR 96 185 -23 255 31 0 0 chr12 13106807 13106839 -131175650 + (T)n Simple_repeat Simple_repeat 1 32 0 2043 124 0 13 chr12 13108060 13108366 -131174123 + AluJb SINE Alu 1 302 -10 2451 87 37 39 chr12 13108470 13108706 -131173783 + MLT2A1 LTR ERVL 1 237 -207 2115 93 14 3 chr12 13108706 13108997 -131173492 - AluSc SINE Alu -15 294 1 2451 87 37 39 chr12 13108997 13109115 -131173374 + MLT2A1 LTR ERVL 237 354 -90 389 130 0 0 chr12 13109278 13109332 -131173157 - AluJ/FRAM SINE Alu -28 274 221 1157 164 14 19 chr12 13109332 13109545 -131172944 + AluJo SINE Alu 1 212 -100 785 154 95 24 chr12 13110160 13110296 -131172193 + MER20 DNA MER1_type 39 164 -55 1729 149 17 10 chr12 13110296 13110591 -131171898 + AluJo SINE Alu 1 297 -15 1498 155 35 48 chr12 13110591 13110907 -131171582 + AluJb SINE Alu 1 312 0 785 154 95 24 chr12 13110907 13110938 -131171551 + MER20 DNA MER1_type 163 219 0 274 228 173 55 chr12 13111175 13111302 -131171187 - L2 LINE L2 -4 3309 3168 1939 129 0 17 chr12 13111499 13111823 -131170666 - AluSx SINE Alu 0 312 1 517 222 198 18 chr12 13111859 13112026 -131170463 - MIR SINE MIR -64 198 2 183 333 56 0 chr12 13112053 13112125 -131170364 - MIR SINE MIR -184 78 3 1846 161 10 3 chr12 13112379 13112684 -131169805 + AluJo SINE Alu 1 307 -5 2217 81 24 0 chr12 13112767 13113062 -131169427 + AluSx SINE Alu 1 302 -10 1864 125 11 4 chr12 13113199 13113524 -131168965 - AluSx SINE Alu 0 327 1 381 229 73 10 chr12 13113772 13113868 -131168621 - MIR SINE MIR -44 218 117 211 196 304 27 chr12 13113840 13113952 -131168537 - MIR3 SINE MIR -63 145 3 * 1869 131 14 0 chr12 13114192 13114482 -131168007 + AluSx SINE Alu 1 294 -18 492 194 112 0 chr12 13114572 13114670 -131167819 + MER81 DNA DNA 5 113 -1 2267 64 0 0 chr12 13114846 13115151 -131167338 + AluY SINE Alu 1 305 0 493 122 0 0 chr12 13115194 13115284 -131167205 - AluS SINE Alu -1 311 222 223 190 51 101 chr12 13115459 13115538 -131166951 + MIR SINE MIR 124 198 -64 866 92 0 0 chr12 13115621 13115740 -131166749 + AluSg/x SINE Alu 180 298 -14 1681 97 26 102 chr12 13115749 13116091 -131166398 + AluYb8 SINE Alu 1 316 -2 525 271 137 75 chr12 13116449 13116902 -131165587 + MLT1J LTR MaLR 1 481 -30 3440 130 12 2 chr12 13116954 13117461 -131165028 - MER41E LTR ERV1 0 512 1 253 283 25 68 chr12 13117536 13117701 -131164788 - MLT1K LTR MaLR -437 151 14 2017 147 0 0 chr12 13117708 13118015 -131164474 + AluSx SINE Alu 1 307 -5 904 223 79 0 chr12 13118035 13118237 -131164252 - MER20 DNA MER1_type -1 218 1 205 307 72 46 chr12 13118463 13118580 -131163909 + L2 LINE L2 2843 2966 -306 1982 138 44 33 chr12 13118580 13118650 -131163839 - MER47A DNA MER2_type -1957 366 298 2234 107 0 3 chr12 13118650 13118959 -131163530 + AluSc SINE Alu 1 308 -1 1982 138 44 33 chr12 13118959 13119250 -131163239 - MER47A DNA MER2_type -2025 298 1 205 307 72 46 chr12 13119250 13119285 -131163204 + L2 LINE L2 2966 2999 -273 2329 68 14 0 chr12 13119292 13119587 -131162902 - AluSp SINE Alu -14 299 1 265 276 0 0 chr12 13119772 13119830 -131162659 + L2 LINE L2 3215 3272 0 1637 196 7 0 chr12 13120427 13120733 -131161756 + AluJo SINE Alu 1 308 -4 2372 65 0 0 chr12 13120952 13121246 -131161243 - AluY SINE Alu -17 294 1 333 225 138 43 chr12 13121443 13121581 -131160908 + MER5B DNA MER1_type 1 151 -27 2187 104 0 3 chr12 13121849 13122147 -131160342 - AluSq SINE Alu -16 297 1 1946 134 7 3 chr12 13122201 13122491 -131159998 - AluSx SINE Alu -19 293 3 2306 92 0 0 chr12 13122493 13122798 -131159691 - AluSx SINE Alu -7 305 1 2958 153 34 77 chr12 13123160 13123322 -131159167 + LTR39 LTR ERV1 3 170 -613 2470 44 0 0 chr12 13123322 13123615 -131158874 + AluY SINE Alu 5 297 -14 2958 153 34 77 chr12 13123615 13123722 -131158767 + LTR39 LTR ERV1 170 280 -503 2146 83 0 0 chr12 13123722 13124025 -131158464 - AluSc SINE Alu 0 306 4 2958 153 34 77 chr12 13124025 13124365 -131158124 + LTR39 LTR ERV1 280 588 -195 2084 104 3 3 chr12 13124365 13124663 -131157826 - AluY SINE Alu -13 298 1 2958 153 34 77 chr12 13124663 13124690 -131157799 + LTR39 LTR ERV1 588 615 -168 2018 138 0 0 chr12 13124698 13124989 -131157500 + AluSx SINE Alu 1 291 -21 257 0 30 0 chr12 13124989 13125022 -131157467 + (TA)n Simple_repeat Simple_repeat 2 35 0 * 354 23 0 0 chr12 13125021 13125064 -131157425 + (TG)n Simple_repeat Simple_repeat 2 44 0 26 0 0 0 chr12 13125064 13125090 -131157399 + AT_rich Low_complexity Low_complexity 1 26 0 745 114 29 0 chr12 13125090 13125195 -131157294 - FLAM_C SINE Alu -25 118 11 622 220 16 89 chr12 13125201 13125392 -131157097 + LTR39 LTR ERV1 599 775 -8 714 206 37 0 chr12 13125740 13125876 -131156613 + MER3 DNA MER1_type 6 146 -63 198 0 0 0 chr12 13125878 13125900 -131156589 + (T)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr12 13125901 13125922 -131156567 + AT_rich Low_complexity Low_complexity 1 21 0 730 146 8 0 chr12 13127075 13127198 -131155291 + FRAM SINE Alu 52 175 -1 2148 92 0 3 chr12 13127209 13127493 -131154996 + AluSc SINE Alu 1 283 -26 243 310 23 18 chr12 13128335 13128506 -131153983 + G-rich Low_complexity Low_complexity 6 177 0 52 30 0 0 chr12 13128506 13128572 -131153917 + GC_rich Low_complexity Low_complexity 1 66 0 227 94 47 47 chr12 13128572 13128678 -131153811 + (CGGG)n Simple_repeat Simple_repeat 4 109 0 * 262 267 0 0 chr12 13128677 13128722 -131153767 + C-rich Low_complexity Low_complexity 1 45 0 1324 91 0 34 chr12 13128725 13128934 -131153555 + AluSg/x SINE Alu 109 310 0 2505 45 0 13 chr12 13128942 13129255 -131153234 + AluY SINE Alu 1 309 -2 652 286 56 13 chr12 13129258 13129489 -131153000 - MLT1L LTR MaLR -31 584 344 2036 120 3 0 chr12 13129533 13129825 -131152664 - AluSx SINE Alu -19 293 1 2342 79 0 0 chr12 13129934 13130238 -131152251 - AluSx SINE Alu -8 304 1 1024 172 40 0 chr12 13130479 13130653 -131151836 + MER5A DNA MER1_type 3 183 -6 933 224 34 64 chr12 13131268 13131533 -131150956 - MLT1A1 LTR MaLR -12 361 164 2107 116 7 0 chr12 13131533 13131836 -131150653 - AluSc SINE Alu 0 309 5 933 224 34 64 chr12 13131836 13131987 -131150502 - MLT1A1 LTR MaLR -209 164 10 664 105 38 19 chr12 13132019 13132114 -131150375 + U6 snRNA snRNA 1 100 -7 1858 98 54 4 chr12 13132114 13132391 -131150098 - AluSc SINE Alu -18 291 1 1589 175 9 22 chr12 13132402 13132717 -131149772 - AluJo SINE Alu -1 311 1 308 244 70 31 chr12 13133042 13133144 -131149345 + AluY SINE Alu 2 89 -212 23 54 0 0 chr12 13133691 13133728 -131148761 + GC_rich Low_complexity Low_complexity 1 37 0 743 108 20 0 chr12 13133885 13133987 -131148502 + Tigger7 DNA MER2_type 2369 2472 -19 2539 68 0 0 chr12 13134003 13134312 -131148177 - AluY SINE Alu -2 309 1 353 91 0 0 chr12 13134339 13134383 -131148106 - MER69 DNA AcHobo -1 2525 2482 401 212 94 0 chr12 13134418 13134503 -131147986 - MER69 DNA AcHobo -2387 139 47 1345 204 0 22 chr12 13134508 13134821 -131147668 - AluSg SINE Alu 0 310 1 182 266 64 37 chr12 13135350 13135459 -131147030 - MIR SINE MIR -74 188 77 961 239 20 3 chr12 13135677 13135970 -131146519 + AluSq SINE Alu 5 302 -1 2082 139 0 0 chr12 13136367 13136654 -131145835 - AluSx SINE Alu -25 287 1 724 184 21 0 chr12 13136661 13136802 -131145687 - L1MEc LINE L1 -5330 1212 1069 647 196 29 23 chr12 13137292 13137447 -131145042 - L1MC4 LINE L1 -95 7713 7652 927 155 6 18 chr12 13137911 13138079 -131144410 + FRAM SINE Alu 1 40 0 395 210 94 105 chr12 13138959 13139140 -131143349 + MER20B DNA MER1_type 1 179 -604 561 236 118 0 chr12 13139203 13139347 -131143142 - MER58B DNA MER1_type 0 341 181 877 160 0 0 chr12 13139347 13139500 -131142989 - AluSg/x SINE Alu 0 307 155 358 294 70 40 chr12 13139503 13139617 -131142872 - L1MEc LINE L1 -6022 803 679 1775 182 11 32 chr12 13139617 13139990 -131142499 + MLT1A1 LTR MaLR 1 365 0 358 294 70 40 chr12 13139990 13140076 -131142413 - L1MEc LINE L1 -6146 679 597 683 135 0 18 chr12 13140777 13140888 -131141601 + AluSp/q SINE Alu 194 302 -11 692 275 73 8 chr12 13140899 13141255 -131141234 + L1MEc LINE L1 953 1331 -5065 1226 229 46 39 chr12 13141284 13141673 -131140816 + L1MC4 LINE L1 7345 7736 -306 506 161 191 89 chr12 13142109 13142277 -131140212 + MER21B LTR ERV1 677 861 -2 708 171 31 0 chr12 13142284 13142413 -131140076 - L1MD3 LINE L1 -959 7036 6904 230 181 42 42 chr12 13142417 13142489 -131140000 - L1MEc LINE L1 -6233 592 521 228 299 94 8 chr12 13142631 13142748 -131139741 - L2 LINE L2 0 3272 3146 349 329 7 20 chr12 13142953 13143099 -131139390 + CT-rich Low_complexity Low_complexity 1 144 0 328 264 28 44 chr12 13143121 13143303 -131139186 + CT-rich Low_complexity Low_complexity 2 180 0 276 313 15 0 chr12 13143304 13143371 -131139118 + polypyrimidine Low_complexity Low_complexity 1 68 0 284 296 11 28 chr12 13143387 13143566 -131138923 + C-rich Low_complexity Low_complexity 5 180 0 1209 177 11 57 chr12 13143891 13144173 -131138316 - L1MC3 LINE L1 -1384 6401 6133 1556 159 0 90 chr12 13145489 13145822 -131136667 - AluJo SINE Alu -9 303 1 1377 138 0 5 chr12 13146801 13146997 -131135492 - AluSx SINE Alu -117 195 1 1518 87 0 50 chr12 13148105 13148324 -131134165 - AluSq SINE Alu -105 208 1 1862 175 0 3 chr12 13148391 13148688 -131133801 + AluJb SINE Alu 5 300 -12 1061 98 0 0 chr12 13148691 13148824 -131133665 + AluSq/x SINE Alu 1 133 -180 2215 117 0 0 chr12 13148828 13149119 -131133370 + AluSx SINE Alu 1 291 -21 1299 106 14 48 chr12 13149120 13149327 -131133162 - Tigger2a DNA MER2_type -234 200 1 2006 153 0 0 chr12 13149419 13149713 -131132776 + AluSx SINE Alu 1 294 -18 1508 134 4 45 chr12 13149967 13150214 -131132275 - AluJb SINE Alu -75 237 1 315 270 11 11 chr12 13150492 13150581 -131131908 - MIR SINE MIR -107 155 67 1646 185 19 26 chr12 13153168 13153481 -131129008 - AluJo SINE Alu -1 311 1 1564 244 94 42 chr12 13153631 13154447 -131128042 - L1MEc LINE L1 -3444 2771 1939 2224 128 0 0 chr12 13154447 13154753 -131127736 - AluSx SINE Alu -6 306 1 1564 244 94 42 chr12 13154753 13155096 -131127393 - L1MEc LINE L1 -4276 1939 1615 1942 222 119 46 chr12 13155100 13155464 -131127025 - L1MC4 LINE L1 -733 7309 6973 2423 68 0 3 chr12 13155464 13155757 -131126732 - AluY SINE Alu -19 292 1 1942 222 119 46 chr12 13155757 13156022 -131126467 - L1MC4 LINE L1 -1069 6973 6626 1868 139 4 7 chr12 13156022 13156302 -131126187 - AluJb SINE Alu -33 279 1 1942 222 119 46 chr12 13156302 13156343 -131126146 - L1MC4 LINE L1 -1416 6626 6589 733 293 71 3 chr12 13156354 13156733 -131125756 - L1MEc LINE L1 -5039 1357 953 2017 117 0 7 chr12 13156744 13157026 -131125463 - AluSq SINE Alu -11 302 23 952 184 0 6 chr12 13157055 13157218 -131125271 - AluJb SINE Alu -14 298 137 1294 280 96 28 chr12 13157218 13157694 -131124795 - L1MEc LINE L1 -5627 769 238 1817 177 11 32 chr12 13157694 13158067 -131124422 + MLT1A1 LTR MaLR 1 365 0 1294 280 96 28 chr12 13158067 13158225 -131124264 - L1MEc LINE L1 -6158 238 92 418 322 41 62 chr12 13158367 13158659 -131123830 - L2 LINE L2 0 3272 2987 2673 45 0 13 chr12 13158690 13159003 -131123486 - AluY SINE Alu -2 309 1 1595 166 40 25 chr12 13159063 13159364 -131123125 + AluJb SINE Alu 1 305 0 2059 122 17 0 chr12 13159388 13159682 -131122807 + AluSx SINE Alu 1 299 -13 2121 126 16 3 chr12 13159715 13160024 -131122465 - AluSq SINE Alu 0 313 1 1630 188 18 0 chr12 13160053 13160330 -131122159 + AluJo SINE Alu 1 282 -30 2103 123 26 0 chr12 13160512 13160814 -131121675 - AluSg SINE Alu 0 310 1 2553 61 0 0 chr12 13160947 13161244 -131121245 - AluY SINE Alu -14 297 1 2172 123 3 7 chr12 13161880 13162190 -131120299 - AluSx SINE Alu -3 309 1 250 324 0 0 chr12 13162202 13162273 -131120216 + L2 LINE L2 3184 3254 -18 2297 93 0 0 chr12 13162801 13163091 -131119398 + AluSx SINE Alu 1 290 -22 1148 221 58 7 chr12 13163231 13163508 -131118981 + L1MD3 LINE L1 7444 7874 -58 1558 157 4 20 chr12 13163508 13163763 -131118726 - AluJb SINE Alu -57 255 5 1148 221 58 7 chr12 13163763 13163797 -131118692 + L1MD3 LINE L1 7874 7905 -27 2018 132 20 7 chr12 13163818 13164121 -131118368 - AluSx SINE Alu 0 312 6 3700 136 116 34 chr12 13164364 13165070 -131117419 - Tigger1 DNA MER2_type -1653 765 2 1451 182 194 30 chr12 13165143 13165723 -131116766 - L1ME1 LINE L1 -154 6012 5528 1609 95 54 0 chr12 13165723 13165944 -131116545 - AluSg/x SINE Alu -12 298 66 1451 182 194 30 chr12 13165944 13166266 -131116223 - L1ME1 LINE L1 -638 5528 4795 582 267 6 0 chr12 13166269 13166434 -131116055 - L1M4 LINE L1 -1014 5943 5778 1876 259 75 36 chr12 13166435 13166792 -131115697 - L1M4c LINE L1 -3441 3516 3175 2522 161 29 2 chr12 13166792 13167207 -131115282 - MSTB LTR MaLR 0 426 1 1876 259 75 36 chr12 13167207 13167246 -131115243 - L1M4c LINE L1 -3782 3175 3139 2141 115 17 10 chr12 13167246 13167542 -131114947 - AluSx SINE Alu -12 300 3 1876 259 75 36 chr12 13167542 13168834 -131113655 - L1M4c LINE L1 -3818 3139 1605 870 146 8 0 chr12 13168863 13168993 -131113496 - FLAM_C SINE Alu -12 131 1 958 241 86 31 chr12 13169011 13169397 -131113092 - L1M4c LINE L1 -5244 1615 1209 474 187 149 15 chr12 13169423 13169557 -131112932 - MLT1F1 LTR MaLR -52 515 364 191 177 51 101 chr12 13169883 13169962 -131112527 + L2 LINE L2 2984 3058 -255 252 254 40 98 chr12 13170158 13170223 -131112266 - L1M4c LINE L1 -6621 238 171 2211 125 0 0 chr12 13170223 13170519 -131111970 - AluSg SINE Alu -14 296 1 252 254 40 98 chr12 13170519 13170677 -131111812 - L1M4c LINE L1 -6688 171 28 2140 135 0 0 chr12 13170716 13171012 -131111477 - AluSx SINE Alu -16 296 1 304 272 68 30 chr12 13171041 13171165 -131111324 - L1MEc LINE L1 -4054 2342 2224 1803 130 41 54 chr12 13171165 13171481 -131111008 - AluSx SINE Alu 0 312 1 304 272 68 30 chr12 13171481 13171591 -131110898 - L1MEc LINE L1 -4172 2224 2099 1264 222 4 19 chr12 13171621 13171878 -131110611 - AluJo SINE Alu -58 254 2 542 193 117 0 chr12 13171879 13172031 -131110458 - L1ME1 LINE L1 -311 5855 5690 700 277 131 9 chr12 13172249 13172664 -131109825 - L3 LINE CR1 -444 1133 617 2360 99 0 0 chr12 13173847 13174149 -131108340 - AluSq SINE Alu -11 302 1 2076 137 0 0 chr12 13174363 13174655 -131107834 - AluSx SINE Alu -20 292 1 459 205 116 0 chr12 13174875 13174987 -131107502 - L2 LINE L2 -1 3312 3188 1403 179 47 51 chr12 13175216 13175512 -131106977 + AluJo SINE Alu 1 295 -17 482 153 0 0 chr12 13175545 13175617 -131106872 - AluS SINE Alu -239 73 2 452 244 24 71 chr12 13176001 13176106 -131106383 + L3 LINE CR1 657 753 -824 2228 103 0 7 chr12 13176106 13176398 -131106091 - AluSx SINE Alu -21 291 2 452 244 24 71 chr12 13176398 13176460 -131106029 + L3 LINE CR1 753 816 -761 2023 129 0 47 chr12 13176461 13176779 -131105710 + AluSx SINE Alu 1 303 -9 521 278 75 0 chr12 13176908 13177081 -131105408 - MIR SINE MIR -75 187 2 209 294 78 29 chr12 13177091 13177193 -131105296 - L3 LINE CR1 -56 1521 1415 * 469 321 25 21 chr12 13177190 13177430 -131105059 + MIR SINE MIR 8 248 -14 518 285 81 62 chr12 13177450 13177659 -131104830 - L3 LINE CR1 -192 1385 1164 1809 159 3 24 chr12 13177659 13177954 -131104535 + AluJb SINE Alu 1 289 -23 518 285 81 62 chr12 13177954 13178113 -131104376 - L3 LINE CR1 -413 1164 1010 325 284 0 11 chr12 13178135 13178230 -131104259 - L3 LINE CR1 -681 896 803 2255 116 0 0 chr12 13178231 13178532 -131103957 - AluSx SINE Alu -11 301 1 2278 124 0 0 chr12 13178755 13179062 -131103427 + AluSx SINE Alu 1 307 -5 481 229 105 0 chr12 13179269 13179374 -131103115 - FLAM_A SINE Alu -17 116 1 329 310 56 21 chr12 13179507 13179649 -131102840 - MIR SINE MIR -24 238 92 1945 117 3 60 chr12 13179976 13180297 -131102192 - AluSx SINE Alu 0 305 2 236 304 123 12 chr12 13180464 13180635 -131101854 - L2 LINE L2 -656 2658 2469 2129 111 27 0 chr12 13180698 13180996 -131101493 - AluSx SINE Alu -4 308 3 1176 271 53 27 chr12 13185586 13186037 -131096452 - L1ME3A LINE L1 -223 5947 5485 868 202 209 39 chr12 13186230 13186487 -131096002 - L1ME4a LINE L1 0 6121 5909 2486 52 0 26 chr12 13186487 13186795 -131095694 + AluY SINE Alu 1 300 -11 868 202 209 39 chr12 13186795 13186953 -131095536 - L1ME4a LINE L1 -212 5909 5635 189 355 53 59 chr12 13187257 13187426 -131095063 - L3 LINE CR1 -75 1502 1335 693 261 85 0 chr12 13187792 13187980 -131094509 - MIR SINE MIR -50 212 9 1188 153 171 78 chr12 13188982 13189316 -131093173 - MLT1A1 LTR MaLR 0 365 1 2106 108 16 29 chr12 13189395 13189711 -131092778 - AluSq SINE Alu -1 312 1 209 265 78 29 chr12 13190249 13190351 -131092138 + MIR SINE MIR 156 262 0 699 289 70 33 chr12 13190554 13190883 -131091606 - LTR67 LTR ERVL -42 515 175 2879 168 33 33 chr12 13192189 13192410 -131090079 - L1MB4 LINE L1 -12 6168 5948 2176 110 3 13 chr12 13192410 13192719 -131089770 - AluJb SINE Alu -6 306 1 2879 168 33 33 chr12 13192719 13193073 -131089416 - L1MB4 LINE L1 -231 5949 5593 6190 180 24 61 chr12 13193096 13193934 -131088555 - L1MB3 LINE L1 -10 6409 5541 11983 34 5 0 chr12 13193934 13196065 -131086424 - L1PA4 LINE L1 -3 6152 4023 6190 180 24 61 chr12 13196065 13197610 -131084879 - L1MB3 LINE L1 -878 5541 4120 5940 68 37 37 chr12 13197616 13197819 -131084670 - SVA Other Other 0 1386 433 5940 72 42 46 chr12 13197819 13198920 -131083569 - SVA Other Other -590 1385 433 1405 96 9 60 chr12 13198934 13199269 -131083220 - SVA Other Other -520 866 549 5545 39 1 160 chr12 13199286 13200257 -131082232 - SVA Other Other -520 866 50 216 0 0 0 chr12 13200267 13200291 -131082198 + (AGGGGG)n Simple_repeat Simple_repeat 6 29 0 12642 175 31 63 chr12 13200302 13201143 -131081346 - L1MB3 LINE L1 -2260 4122 3256 1631 164 9 59 chr12 13201143 13201467 -131081022 - AluJo SINE Alu 0 312 5 12642 175 31 63 chr12 13201467 13201490 -131080999 - L1MB3 LINE L1 -3126 3256 3234 2192 109 0 29 chr12 13201490 13201801 -131080688 - AluSx SINE Alu -10 302 1 12642 175 31 63 chr12 13201801 13202377 -131080112 - L1MB3 LINE L1 -3148 3234 2641 1596 167 52 0 chr12 13202377 13202646 -131079843 - AluSx SINE Alu -23 289 7 12642 175 31 63 chr12 13202646 13202698 -131079791 - L1MB3 LINE L1 -3741 2641 2589 2059 97 3 54 chr12 13202698 13203048 -131079441 - AluY SINE Alu 0 335 1 12642 175 31 63 chr12 13203048 13203123 -131079366 - L1MB3 LINE L1 -3793 2589 2513 1717 171 4 7 chr12 13203123 13203398 -131079091 + AluJo SINE Alu 10 283 -29 12642 175 31 63 chr12 13203398 13203751 -131078738 - L1MB3 LINE L1 -3869 2513 2150 19307 59 5 4 chr12 13203751 13206897 -131075592 - L1PA6 LINE L1 0 6154 3009 12642 175 31 63 chr12 13206897 13207009 -131075480 - L1MB3 LINE L1 -4232 2150 2036 322 113 48 0 chr12 13207009 13207042 -131075447 - MER41A LTR ERV1 -88 466 436 2057 126 44 0 chr12 13207042 13207336 -131075153 + AluSx SINE Alu 1 307 -5 322 113 48 0 chr12 13207336 13207364 -131075125 - MER41A LTR ERV1 -118 436 402 12642 175 31 63 chr12 13207364 13207695 -131074794 - L1MB3 LINE L1 -4346 2036 1696 2360 69 0 20 chr12 13207695 13207998 -131074491 - AluY SINE Alu 0 311 15 12642 175 31 63 chr12 13207998 13208401 -131074088 - L1MB3 LINE L1 -4686 1696 1282 2043 144 0 3 chr12 13208401 13208700 -131073789 - AluSx SINE Alu -14 298 1 12642 175 31 63 chr12 13208700 13210120 -131072369 - L1MB3 LINE L1 -5100 1282 2 1527 161 62 19 chr12 13210108 13210432 -131072057 - L1M3 LINE L1 -578 5602 5265 * 318 323 164 23 chr12 13210642 13210862 -131071627 - MIR SINE MIR -6 256 6 484 227 0 31 chr12 13210962 13211059 -131071430 - FLAM_A SINE Alu -27 115 22 440 278 26 0 chr12 13211408 13211523 -131070966 - MIR SINE MIR -89 173 56 2429 80 0 3 chr12 13211878 13212190 -131070299 - AluY SINE Alu 0 311 1 1827 198 14 32 chr12 13212331 13212700 -131069789 - MLT1A1 LTR MaLR 0 365 4 244 232 160 33 chr12 13213406 13213587 -131068902 + L1MC4 LINE L1 7837 8040 -2 233 361 72 0 chr12 13214744 13214827 -131067662 - L2 LINE L2 -27 3245 3157 2525 60 0 3 chr12 13214862 13215161 -131067328 - AluY SINE Alu -13 298 1 24 0 0 0 chr12 13215327 13215351 -131067138 + AT_rich Low_complexity Low_complexity 1 24 0 1524 266 65 41 chr12 13215437 13216111 -131066378 - L1MC4a LINE L1 -1805 6003 5310 2412 74 3 0 chr12 13216111 13216410 -131066079 - AluSc SINE Alu -9 300 1 1524 266 65 41 chr12 13216410 13216438 -131066051 - L1MC4a LINE L1 -2498 5310 5284 1749 127 0 0 chr12 13216467 13216704 -131065785 - AluSx SINE Alu -75 237 1 3581 169 28 53 chr12 13217148 13217762 -131064727 + L1MD2 LINE L1 5555 6183 -176 1820 141 50 14 chr12 13217762 13218059 -131064430 + AluSx SINE Alu 1 308 -4 751 206 0 0 chr12 13218069 13218195 -131064294 + FLAM_A SINE Alu 2 127 -6 3581 169 28 53 chr12 13218195 13218321 -131064168 + L1MD2 LINE L1 6192 6287 -72 1719 130 24 0 chr12 13218762 13219015 -131063474 + AluJo SINE Alu 47 305 -7 2062 166 89 11 chr12 13219110 13219581 -131062908 + Charlie1b DNA MER1_type 16 523 0 27 0 0 0 chr12 13219902 13219929 -131062560 + AT_rich Low_complexity Low_complexity 1 27 0 688 253 39 11 chr12 13220013 13220195 -131062294 + MIR SINE MIR 70 256 -6 530 253 86 19 chr12 13220615 13220777 -131061712 + MIR SINE MIR 2 174 -88 2991 93 0 0 chr12 13221783 13222147 -131060342 + THE1B LTR MaLR 1 364 0 255 253 0 63 chr12 13222286 13222381 -131060108 - MER103 DNA DNA -47 119 31 1343 193 133 15 chr12 13222475 13222739 -131059750 - AluJo SINE Alu -7 295 1 1722 120 0 0 chr12 13222864 13223098 -131059391 + AluSg/x SINE Alu 74 307 -3 199 354 0 0 chr12 13223112 13223194 -131059295 - MIR3 SINE MIR -49 159 78 608 275 34 14 chr12 13223364 13223571 -131058918 - L1MC5 LINE L1 -66 7895 7685 * 903 196 14 27 chr12 13223556 13223776 -131058713 - L1MD3 LINE L1 -1 7994 7778 467 236 33 121 chr12 13223841 13224023 -131058466 + MER5B DNA MER1_type 13 178 0 1694 136 45 21 chr12 13224059 13224346 -131058143 + AluJb SINE Alu 4 297 -15 519 226 30 38 chr12 13225481 13225614 -131056875 - MIR3 SINE MIR -7 201 70 223 342 77 0 chr12 13225622 13225777 -131056712 - L2 LINE L2 -1574 1740 1574 854 297 21 0 chr12 13226007 13226243 -131056246 + MIR SINE MIR 1 241 -21 25 0 0 0 chr12 13226422 13226447 -131056042 + AT_rich Low_complexity Low_complexity 1 25 0 373 179 90 0 chr12 13228784 13228851 -131053638 + L2 LINE L2 3236 3308 -5 952 235 122 19 chr12 13228933 13229305 -131053184 - MLT1J2 LTR MaLR 0 450 47 1170 148 66 0 chr12 13229550 13229746 -131052743 + MER30 DNA MER1_type 1 209 -21 1582 169 14 35 chr12 13229759 13230049 -131052440 - AluJo SINE Alu -25 287 4 275 248 28 28 chr12 13230103 13230212 -131052277 + L1ME4a LINE L1 5997 6105 -16 225 0 0 0 chr12 13230241 13230266 -131052223 + (T)n Simple_repeat Simple_repeat 1 25 0 277 254 0 0 chr12 13230268 13230327 -131052162 - MER5A DNA MER1_type -55 134 76 1674 168 3 44 chr12 13230337 13230653 -131051836 - AluJo SINE Alu -8 304 2 240 35 0 0 chr12 13230653 13230682 -131051807 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 607 269 69 33 chr12 13230799 13231074 -131051415 - L2 LINE L2 -19 3294 3010 2224 112 3 3 chr12 13232914 13233226 -131049263 - AluSq SINE Alu -1 312 1 2210 103 13 0 chr12 13233236 13233538 -131048951 - AluSg SINE Alu -4 306 1 367 216 52 17 chr12 13234872 13234988 -131047501 + MIR SINE MIR 33 152 -56 22 0 0 0 chr12 13235212 13235234 -131047255 + AT_rich Low_complexity Low_complexity 1 22 0 554 314 53 10 chr12 13235411 13235618 -131046871 + MIR SINE MIR 34 249 -13 2314 49 0 111 chr12 13236313 13236657 -131045832 + AluSc SINE Alu 1 306 -3 21 0 0 0 chr12 13236803 13236824 -131045665 + AT_rich Low_complexity Low_complexity 1 21 0 535 192 68 10 chr12 13237786 13237950 -131044539 + L1MA9 LINE L1 6130 6299 -1 258 290 130 22 chr12 13238216 13238354 -131044135 + MER117 DNA MER1_type 10 162 -35 4474 174 20 0 chr12 13238394 13239203 -131043286 - L1MB7 LINE L1 -19 6165 5341 381 229 114 69 chr12 13239482 13239657 -131042832 - MIR SINE MIR -43 219 37 2193 118 3 0 chr12 13240209 13240506 -131041983 + AluSx SINE Alu 1 298 -14 1785 155 14 3 chr12 13240863 13241153 -131041336 + AluJo SINE Alu 1 293 -19 579 284 14 30 chr12 13241823 13242039 -131040450 - MIR SINE MIR -12 250 40 2166 36 0 4 chr12 13242099 13242352 -131040137 + AluY SINE Alu 1 252 -59 261 0 0 0 chr12 13242831 13242860 -131039629 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 773 131 16 0 chr12 13243280 13243402 -131039087 - AluSg/x SINE Alu 0 312 189 2271 103 0 10 chr12 13243402 13243702 -131038787 + AluSg SINE Alu 1 297 -13 1469 87 5 10 chr12 13243713 13243908 -131038581 - AluSp SINE Alu -119 194 1 4781 225 59 26 chr12 13243908 13244025 -131038464 - L1MB7 LINE L1 -957 5189 5077 2087 128 7 7 chr12 13244025 13244323 -131038166 - AluSq SINE Alu -15 298 1 4781 225 59 26 chr12 13244323 13245607 -131036882 - L1MB7 LINE L1 -1069 5077 3741 1564 220 0 13 chr12 13245872 13246185 -131036304 - AluJb SINE Alu -3 309 1 463 241 143 92 chr12 13246197 13246567 -131035922 - MLT1J LTR MaLR -2 509 121 * 934 169 97 48 chr12 13246551 13246799 -131035690 - MER110A LTR ERV1 -208 260 1 215 197 0 98 chr12 13246807 13246868 -131035621 + L2 LINE L2 3207 3261 -11 426 283 14 21 chr12 13246877 13247022 -131035467 - MIR SINE MIR -2 260 117 438 243 108 0 chr12 13247036 13247147 -131035342 - L2 LINE L2 0 3313 3191 219 347 53 21 chr12 13247147 13247242 -131035247 - MIR SINE MIR -159 103 6 2048 114 34 3 chr12 13247364 13247661 -131034828 - AluSx SINE Alu -6 306 1 414 262 78 0 chr12 13248031 13248172 -131034317 + MER113 DNA MER1_type? 345 496 -25 1083 173 5 0 chr12 13249685 13249870 -131032619 - AluJb SINE Alu -12 300 115 28 29 0 0 chr12 13250765 13250800 -131031689 + AT_rich Low_complexity Low_complexity 1 35 0 948 175 0 0 chr12 13251657 13251811 -131030678 - FRAM SINE Alu -27 149 1 21 0 0 0 chr12 13251811 13251832 -131030657 + AT_rich Low_complexity Low_complexity 1 21 0 1368 216 163 41 chr12 13252382 13252971 -131029518 + MLT2F LTR ERVL 1 661 -2 377 263 51 17 chr12 13253167 13253285 -131029204 + MIR3 SINE MIR 87 208 0 2183 98 0 11 chr12 13253784 13254069 -131028420 + AluSq SINE Alu 1 282 -31 1713 143 0 60 chr12 13254675 13254796 -131027693 + Charlie3 DNA MER1_type 1 128 -2584 2303 81 3 0 chr12 13254796 13255081 -131027408 - AluSg SINE Alu -24 286 1 1713 143 0 60 chr12 13255081 13255362 -131027127 + Charlie3 DNA MER1_type 128 2712 0 4000 123 121 102 chr12 13256335 13257691 -131024798 - pTR5 LTR ERV1 0 2438 734 2139 117 21 0 chr12 13257694 13257985 -131024504 - AluSq SINE Alu -16 297 1 1865 130 20 37 chr12 13263050 13263349 -131019140 - AluJo SINE Alu -18 294 1 565 241 116 19 chr12 13263606 13263813 -131018676 - MIR SINE MIR -29 233 7 2047 111 21 0 chr12 13265452 13265732 -131016757 - AluSx SINE Alu -26 286 1 245 234 226 24 chr12 13267003 13267127 -131015362 + L1ME4a LINE L1 5967 6115 -6 1713 140 15 11 chr12 13267435 13267700 -131014789 - AluJo SINE Alu -20 292 27 220 216 0 0 chr12 13268072 13268123 -131014366 + T-rich Low_complexity Low_complexity 1 51 0 627 282 45 10 chr12 13268123 13268325 -131014164 - MIR SINE MIR -53 209 1 202 193 35 0 chr12 13268664 13268721 -131013768 + A-rich Low_complexity Low_complexity 1 59 0 2114 107 40 7 chr12 13269326 13269625 -131012864 - AluSx SINE Alu -3 309 1 2379 82 0 7 chr12 13269724 13270015 -131012474 - AluSx SINE Alu -13 299 11 1282 181 127 8 chr12 13270232 13270492 -131011997 - AluSg SINE Alu -19 291 1 2429 92 0 0 chr12 13270500 13270806 -131011683 - AluY SINE Alu -5 306 1 333 0 0 0 chr12 13271195 13271232 -131011257 + (TG)n Simple_repeat Simple_repeat 1 37 0 276 325 98 49 chr12 13272298 13272646 -131009843 + L2 LINE L2 2155 2519 -795 2229 105 3 7 chr12 13273510 13273816 -131008673 + AluSp SINE Alu 1 305 -8 466 214 9 0 chr12 13274598 13274710 -131007779 - MIR SINE MIR 0 262 150 1248 170 0 19 chr12 13274710 13274922 -131007567 - AluJo SINE Alu -95 217 10 26 0 0 0 chr12 13275867 13275893 -131006596 + AT_rich Low_complexity Low_complexity 1 26 0 763 194 0 15 chr12 13275929 13276063 -131006426 - FLAM_A SINE Alu -1 132 1 21 36 0 0 chr12 13276182 13276210 -131006279 + AT_rich Low_complexity Low_complexity 1 28 0 5210 230 143 22 chr12 13276407 13278754 -131003735 + L2 LINE L2 705 3313 0 396 274 32 24 chr12 13279706 13279830 -131002659 + MIR SINE MIR 60 184 -78 325 104 0 0 chr12 13279907 13279955 -131002534 + L1MB8 LINE L1 6131 6178 0 237 342 171 5 chr12 13280633 13280832 -131001657 - MIR SINE MIR -29 233 2 1592 153 41 25 chr12 13281688 13282002 -131000487 + MER33 DNA MER1_type 6 324 0 2343 78 0 0 chr12 13282404 13282717 -130999772 + AluSc SINE Alu 1 313 0 261 333 8 25 chr12 13282942 13283062 -130999427 + MIR3 SINE MIR 76 193 -15 1625 177 0 11 chr12 13283093 13283421 -130999068 - AluJb SINE Alu 0 336 12 23 0 0 0 chr12 13285409 13285432 -130997057 + AT_rich Low_complexity Low_complexity 1 23 0 2449 72 10 0 chr12 13286424 13286729 -130995760 + AluSq SINE Alu 1 308 -5 2010 100 4 0 chr12 13287265 13287524 -130994965 - AluSp SINE Alu -12 301 42 712 252 88 17 chr12 13287698 13287936 -130994553 + MIR SINE MIR 5 259 -3 2135 73 4 0 chr12 13287938 13288198 -130994291 - AluSx SINE Alu -11 301 41 346 269 45 32 chr12 13288402 13288558 -130993931 - MER103 DNA DNA -8 158 1 1842 142 24 7 chr12 13288980 13289275 -130993214 - AluJb SINE Alu -12 300 1 1176 141 0 101 chr12 13289370 13289597 -130992892 + AluJb SINE Alu 86 289 -23 515 286 103 17 chr12 13289734 13289909 -130992580 - MIR SINE MIR -13 249 60 2336 86 3 0 chr12 13292318 13292622 -130989867 - AluSp SINE Alu -8 305 1 212 306 32 0 chr12 13293925 13293987 -130988502 + L2 LINE L2 2875 2938 -334 229 217 66 19 chr12 13294073 13294179 -130988310 + MER112 DNA MER1_type 11 121 -139 357 323 57 16 chr12 13294338 13294462 -130988027 + L2 LINE L2 3136 3264 -8 588 327 70 49 chr12 13295292 13295934 -130986555 - L2 LINE L2 -9 3263 2596 227 323 88 93 chr12 13296108 13296551 -130985938 + L2 LINE L2 2831 3271 -1 2626 141 83 4 chr12 13296913 13297404 -130985085 - L1MA9 LINE L1 0 6312 5783 221 304 54 22 chr12 13298234 13298326 -130984163 + MIR3 SINE MIR 88 182 -26 237 290 125 62 chr12 13298817 13298993 -130983496 - MIR SINE MIR -56 206 20 1654 169 45 10 chr12 13299381 13299671 -130982818 - AluJo SINE Alu -11 301 2 22 56 0 0 chr12 13299830 13299866 -130982623 + AT_rich Low_complexity Low_complexity 1 36 0 2333 95 3 3 chr12 13300044 13300340 -130982149 - AluSp SINE Alu -17 296 1 2230 122 0 0 chr12 13300491 13300786 -130981703 - AluSx SINE Alu -15 297 3 965 166 25 0 chr12 13300854 13301017 -130981472 - FRAM SINE Alu -10 166 1 2202 118 7 0 chr12 13302945 13303249 -130979240 + AluSx SINE Alu 1 306 -6 25 31 0 0 chr12 13303996 13304028 -130978461 + AT_rich Low_complexity Low_complexity 1 32 0 2192 122 0 0 chr12 13307280 13307576 -130974913 - AluJb SINE Alu -16 296 1 459 264 28 21 chr12 13307846 13307990 -130974499 + MIR SINE MIR 64 208 -54 246 145 29 58 chr12 13309533 13309602 -130972887 + L1MA10 LINE L1 6265 6331 -3 21 36 0 0 chr12 13309632 13309660 -130972829 + AT_rich Low_complexity Low_complexity 1 28 0 327 260 101 66 chr12 13309664 13309891 -130972598 - L1MC4a LINE L1 -1725 6083 5849 2334 72 21 0 chr12 13309984 13310275 -130972214 - AluSp SINE Alu -15 298 2 900 158 8 0 chr12 13310303 13310436 -130972053 + AluJo SINE Alu 1 134 -178 279 0 0 0 chr12 13310444 13310475 -130972014 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr12 13310947 13310969 -130971520 + AT_rich Low_complexity Low_complexity 1 22 0 666 58 0 11 chr12 13312228 13312315 -130970174 + L1PA7 LINE L1 6057 6142 -12 299 253 133 0 chr12 13313304 13313379 -130969110 - L2 LINE L2 0 3313 3229 506 284 98 30 chr12 13313427 13313691 -130968798 - L2 LINE L2 -74 3239 2958 1960 159 7 3 chr12 13313821 13314122 -130968367 - AluJo SINE Alu -10 302 1 4735 160 48 12 chr12 13314126 13315271 -130967218 - L1MA8 LINE L1 -4 6287 5102 285 125 0 0 chr12 13316133 13316173 -130966316 + AluSx SINE Alu 1 40 -260 1805 125 4 0 chr12 13316338 13316586 -130965903 + AluSx SINE Alu 38 286 -26 2741 16 0 0 chr12 13316589 13316896 -130965593 + AluYb8 SINE Alu 1 307 -11 226 224 32 83 chr12 13316941 13317097 -130965392 + L1ME LINE L1 5724 5871 -250 2302 102 0 3 chr12 13317380 13317683 -130964806 + AluSx SINE Alu 3 304 -8 293 339 8 31 chr12 13318435 13318565 -130963924 + MIR SINE MIR 19 145 -63 1781 65 9 0 chr12 13368840 13369056 -130913433 - AluSg/x SINE Alu -9 301 84 291 53 0 0 chr12 13369057 13369095 -130913394 + AluS SINE Alu 62 99 -203 596 233 59 68 chr12 13369174 13369373 -130913116 + L1ME LINE L1 5448 5646 -475 2226 83 0 48 chr12 13369373 13369686 -130912803 + AluSg SINE Alu 1 298 -12 596 233 59 68 chr12 13369686 13369722 -130912767 + L1ME LINE L1 5646 5681 -440 1776 135 3 57 chr12 13369832 13369977 -130912512 + AluJo SINE Alu 5 127 -185 2087 109 29 26 chr12 13369977 13370288 -130912201 + AluSp SINE Alu 1 312 -1 1776 135 3 57 chr12 13370288 13370439 -130912050 + AluJo SINE Alu 127 285 -27 469 329 132 29 chr12 13370628 13370999 -130911490 - L2 LINE L2 -786 2528 2197 2297 100 0 0 chr12 13370999 13371290 -130911199 + AluSq SINE Alu 1 291 -22 469 329 132 29 chr12 13371290 13371651 -130910838 - L2 LINE L2 -1117 2197 1720 21 36 0 0 chr12 13371953 13371981 -130910508 + AT_rich Low_complexity Low_complexity 1 28 0 2057 128 20 0 chr12 13372097 13372394 -130910095 - AluJb SINE Alu -9 303 1 1326 206 10 45 chr12 13372534 13372853 -130909636 + AluJo SINE Alu 1 309 0 2335 113 3 0 chr12 13372922 13373233 -130909256 - AluSx SINE Alu 0 312 1 1726 151 21 28 chr12 13373333 13373624 -130908865 - AluJo SINE Alu -23 289 1 2219 126 3 0 chr12 13374016 13374317 -130908172 + AluSg SINE Alu 1 302 -8 486 248 68 0 chr12 13374457 13374590 -130907899 - MIR SINE MIR -74 188 47 430 259 167 12 chr12 13374814 13374976 -130907513 + MIR SINE MIR 55 241 -21 236 100 25 0 chr12 13375310 13375350 -130907139 - L1ME4a LINE L1 -11 6110 6070 461 116 4 24 chr12 13375352 13375595 -130906894 + AluSx SINE Alu 1 310 0 764 133 19 38 chr12 13375717 13375875 -130906614 - L1MA9 LINE L1 0 6312 6158 26 64 0 0 chr12 13376154 13376201 -130906288 + AT_rich Low_complexity Low_complexity 1 47 0 539 186 97 0 chr12 13376561 13376685 -130905804 + MIR SINE MIR 83 218 -44 494 269 54 21 chr12 13377095 13377281 -130905208 + MIR SINE MIR 1 192 -70 2059 127 0 13 chr12 13377295 13377616 -130904873 + AluSq SINE Alu 1 313 0 342 0 0 0 chr12 13377623 13377661 -130904828 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 1413 164 56 19 chr12 13377662 13377931 -130904558 - AluJb SINE Alu -33 279 1 2288 181 31 43 chr12 13378198 13378706 -130903783 - MLT1D LTR MaLR 0 505 4 1548 83 5 0 chr12 13378956 13379148 -130903341 + AluSg SINE Alu 1 193 -117 1671 184 24 10 chr12 13379243 13379416 -130903073 - AluJb SINE Alu -15 297 117 477 0 0 0 chr12 13379416 13379469 -130903020 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 1671 184 24 10 chr12 13379469 13379588 -130902901 - AluJb SINE Alu -195 117 1 666 101 92 18 chr12 13379683 13379792 -130902697 + FRAM SINE Alu 21 137 -39 2363 92 3 0 chr12 13380136 13380430 -130902059 - AluSp SINE Alu -16 297 3 605 287 79 9 chr12 13380620 13380836 -130901653 - MIR SINE MIR -8 254 24 262 258 30 0 chr12 13380866 13380932 -130901557 + MIR3 SINE MIR 118 185 -23 1567 161 20 40 chr12 13382547 13382846 -130899643 + AluJo SINE Alu 1 293 -19 788 230 30 45 chr12 13382899 13383164 -130899325 - MIR SINE MIR -1 261 1 342 274 89 7 chr12 13383196 13383331 -130899158 - MIR SINE MIR -91 171 26 183 80 0 0 chr12 13383773 13383798 -130898691 + (A)n Simple_repeat Simple_repeat 1 25 0 374 121 15 0 chr12 13384356 13384422 -130898067 + L1MB4 LINE L1 6108 6174 -6 278 327 18 18 chr12 13385067 13385180 -130897309 - MIR SINE MIR -59 149 37 274 307 23 0 chr12 13385889 13385977 -130896512 - MIR3 SINE MIR 0 208 119 449 322 84 23 chr12 13385992 13386253 -130896236 - L3 LINE CR1 -563 1014 738 219 88 0 0 chr12 13386321 13386355 -130896134 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1573 134 69 33 chr12 13386358 13386634 -130895855 - AluJb SINE Alu -26 286 1 2056 137 0 13 chr12 13387090 13387396 -130895093 - AluSx SINE Alu -10 302 1 204 300 0 0 chr12 13387600 13387660 -130894829 + L2 LINE L2 2440 2499 -815 459 291 137 17 chr12 13387663 13387897 -130894592 - MIR SINE MIR 0 262 1 243 277 15 0 chr12 13387900 13387965 -130894524 - LTR16B LTR ERVL -110 354 289 277 312 0 0 chr12 13388013 13388170 -130894319 + (TTGG)n Simple_repeat Simple_repeat 1 157 0 266 316 0 0 chr12 13388193 13388370 -130894119 + (TTGG)n Simple_repeat Simple_repeat 1 177 0 300 311 0 0 chr12 13388393 13388570 -130893919 + (TTGG)n Simple_repeat Simple_repeat 1 177 0 252 307 6 0 chr12 13389332 13389569 -130892920 + (TTGG)n Simple_repeat Simple_repeat 1 238 0 355 251 28 22 chr12 13389578 13389757 -130892732 + (TGGG)n Simple_repeat Simple_repeat 1 180 0 936 282 37 0 chr12 13389763 13390004 -130892485 - LTR16B LTR ERVL -167 297 48 230 391 40 6 chr12 13390081 13390255 -130892234 + L2 LINE L2 2564 2743 -571 2052 136 0 7 chr12 13390263 13390396 -130892093 + AluSx SINE Alu 2 134 -178 2523 68 0 0 chr12 13390396 13390692 -130891797 + AluY SINE Alu 1 296 -15 2052 136 0 7 chr12 13390692 13390853 -130891636 + AluSx SINE Alu 134 294 -18 215 227 0 0 chr12 13391364 13391408 -130891081 - L3 LINE CR1 -34 1543 1500 1905 136 3 57 chr12 13391680 13391997 -130890492 + AluSx SINE Alu 1 300 -12 23 68 0 0 chr12 13392661 13392705 -130889784 + AT_rich Low_complexity Low_complexity 1 44 0 680 108 117 33 chr12 13392912 13393032 -130889457 + FLAM_C SINE Alu 9 138 -5 569 265 61 85 chr12 13393045 13393089 -130889400 + L1MC4a LINE L1 4730 4774 -1558 2572 53 7 0 chr12 13393089 13393392 -130889097 + AluY SINE Alu 1 305 -6 569 265 61 85 chr12 13393392 13393911 -130888578 + L1MC4a LINE L1 4774 5304 -1028 1890 147 0 23 chr12 13393911 13394218 -130888271 + AluSx SINE Alu 1 300 -12 569 265 61 85 chr12 13394218 13394262 -130888227 + L1MC4a LINE L1 5304 5348 -984 2069 101 17 20 chr12 13394262 13394558 -130887931 + AluSp SINE Alu 1 295 -18 569 265 61 85 chr12 13394558 13394818 -130887671 + L1MC4a LINE L1 5348 5588 -744 1522 150 80 29 chr12 13394836 13395150 -130887339 - LTR10A LTR ERV1 -99 510 181 243 258 16 48 chr12 13395205 13395329 -130887160 - LTR10A LTR ERV1 -309 300 181 344 215 9 0 chr12 13395566 13395673 -130886816 + CT-rich Low_complexity Low_complexity 1 108 0 2982 63 0 0 chr12 13395846 13396213 -130886276 + L1PA5 LINE L1 5783 6149 -5 349 248 62 31 chr12 13396379 13396508 -130885981 + L1MC4a LINE L1 5810 5942 -1866 1761 161 16 29 chr12 13396750 13397060 -130885429 - AluJo SINE Alu -6 306 1 2155 108 0 41 chr12 13397073 13397388 -130885101 - AluSx SINE Alu -6 306 5 24 53 0 0 chr12 13398047 13398085 -130884404 + AT_rich Low_complexity Low_complexity 1 38 0 304 287 42 14 chr12 13398130 13398273 -130884216 + L2 LINE L2 2712 2858 -456 291 290 73 40 chr12 13398552 13398676 -130883813 + L2 LINE L2 3145 3272 0 200 111 28 0 chr12 13399815 13399851 -130882638 + (CACAA)n Simple_repeat Simple_repeat 4 40 0 2216 113 10 0 chr12 13400576 13400876 -130881613 + AluSx SINE Alu 1 303 -9 26 50 0 0 chr12 13401246 13401286 -130881203 + AT_rich Low_complexity Low_complexity 1 40 0 1120 161 0 0 chr12 13401318 13401486 -130881003 - AluJb SINE Alu -16 296 129 2268 91 0 26 chr12 13401505 13401813 -130880676 + AluSg SINE Alu 1 300 -10 692 151 92 164 chr12 13401822 13402060 -130880429 + AluJo SINE Alu 41 261 -51 2282 96 7 0 chr12 13402122 13402413 -130880076 + AluSp SINE Alu 1 293 -20 1541 127 26 136 chr12 13402790 13403136 -130879353 + AluYb8 SINE Alu 1 308 0 2379 98 0 13 chr12 13403338 13403654 -130878835 + AluSx SINE Alu 1 312 0 2504 64 0 13 chr12 13404723 13405037 -130877452 - AluY SINE Alu -1 310 1 2272 93 30 3 chr12 13405478 13405779 -130876710 + AluSx SINE Alu 1 309 -3 2519 67 3 0 chr12 13406876 13407176 -130875313 - AluY SINE Alu -10 301 1 2224 117 3 0 chr12 13407351 13407649 -130874840 + AluSx SINE Alu 1 299 -13 2361 79 3 0 chr12 13408401 13408692 -130873797 + AluY SINE Alu 6 297 -14 401 237 21 0 chr12 13408698 13408791 -130873698 - MER53 DNA DNA -94 95 1 1633 142 19 111 chr12 13408988 13409122 -130873367 - L1MB7 LINE L1 0 6184 6039 2317 97 7 0 chr12 13409122 13409432 -130873057 - AluSp SINE Alu -1 312 1 1633 142 19 111 chr12 13409432 13409721 -130872768 - L1MB7 LINE L1 -145 6039 5800 1096 152 34 0 chr12 13409721 13409899 -130872590 - AluJo SINE Alu -12 300 117 228 23 0 68 chr12 13409954 13409998 -130872491 + (TTC)n Simple_repeat Simple_repeat 1 41 0 919 192 149 18 chr12 13410003 13410024 -130872465 - L1ME3A LINE L1 -345 5825 5808 1952 155 3 3 chr12 13410024 13410333 -130872156 - AluJb SINE Alu -3 309 1 919 192 149 18 chr12 13410333 13410558 -130871931 - L1ME3A LINE L1 -362 5808 5547 2458 59 7 7 chr12 13411940 13412243 -130870246 - AluSp SINE Alu -10 303 1 2192 99 16 22 chr12 13413055 13413368 -130869121 - AluSx SINE Alu -1 311 1 1132 157 45 10 chr12 13413536 13413734 -130868755 - AluJo SINE Alu -7 305 101 1683 108 0 54 chr12 13413931 13414098 -130868391 - AluSx SINE Alu -12 300 150 1828 110 6 113 chr12 13414098 13414424 -130868065 - AluSx SINE Alu -21 291 1 1683 108 0 54 chr12 13414424 13414514 -130867975 - AluSx SINE Alu -162 150 57 2115 119 14 0 chr12 13414570 13414865 -130867624 - AluSc SINE Alu -10 299 1 422 274 115 0 chr12 13416487 13416644 -130865845 + MIR SINE MIR 88 262 0 195 42 0 0 chr12 13416714 13416738 -130865751 + (T)n Simple_repeat Simple_repeat 1 24 0 10547 59 18 42 chr12 13416738 13418158 -130864331 - SVA Other Other 0 1386 1 1748 164 13 17 chr12 13418401 13418699 -130863790 + AluSx SINE Alu 1 297 -15 1709 173 29 10 chr12 13419297 13419603 -130862886 - AluJb SINE Alu 0 312 1 366 327 74 25 chr12 13419799 13419961 -130862528 - L2 LINE L2 0 3272 3103 746 215 117 44 chr12 13420157 13420310 -130862179 - MER58A DNA MER1_type -2197 223 50 2477 88 3 0 chr12 13420310 13420618 -130861871 + AluSp SINE Alu 1 309 -4 746 215 117 44 chr12 13420618 13420669 -130861820 - MER58A DNA MER1_type -2370 50 4 305 314 0 39 chr12 13420798 13420900 -130861589 + MER5A DNA MER1_type 89 186 -3 321 272 40 32 chr12 13420913 13421038 -130861451 - L2 LINE L2 -557 2757 2632 418 349 52 15 chr12 13421039 13421286 -130861203 + MIR SINE MIR 3 255 -7 312 329 90 22 chr12 13421321 13421598 -130860891 - L2 LINE L2 -1046 2268 1973 288 318 38 15 chr12 13422272 13422404 -130860085 - L2 LINE L2 -1 3271 3137 1269 204 136 50 chr12 13422744 13423209 -130859280 + MLT1D LTR MaLR 1 505 0 2181 190 161 101 chr12 13423503 13424348 -130858141 - LTR28 LTR ERV1 0 1020 1 184 314 79 36 chr12 13424864 13425004 -130857485 + L2 LINE L2 3168 3313 0 256 306 66 8 chr12 13425007 13425128 -130857361 + MIR SINE MIR 114 241 -21 866 152 6 13 chr12 13425616 13425774 -130856715 - L1MB7 LINE L1 0 6184 6028 324 226 0 0 chr12 13425776 13425838 -130856651 + L1MC2 LINE L1 5767 5828 -516 865 142 0 0 chr12 13425843 13425970 -130856519 + FLAM_A SINE Alu 16 142 0 2241 131 117 13 chr12 13425981 13426439 -130856050 + L1MC2 LINE L1 5816 6344 0 4337 132 81 17 chr12 13426443 13426968 -130855521 - L1MB7 LINE L1 -145 6039 5549 2185 85 21 7 chr12 13426968 13427251 -130855238 - AluSc SINE Alu -21 288 2 4337 132 81 17 chr12 13427251 13427679 -130854810 - L1MB7 LINE L1 -635 5549 5005 872 177 16 47 chr12 13427679 13427871 -130854618 - AluJb SINE Alu -10 302 117 7625 211 40 27 chr12 13427871 13429916 -130852573 - L1MB7 LINE L1 -1170 4976 2905 229 183 0 118 chr12 13429920 13430013 -130852476 - L1MB7 LINE L1 -3200 2946 2865 2926 10 0 0 chr12 13431138 13431449 -130851040 - AluYa5 SINE Alu 0 311 1 21 0 0 0 chr12 13431831 13431852 -130850637 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr12 13431960 13431993 -130850496 + AT_rich Low_complexity Low_complexity 1 33 0 2162 130 0 9 chr12 13431993 13432309 -130850180 - AluSq SINE Alu 0 313 1 1109 127 0 0 chr12 13432373 13432531 -130849958 + AluSq SINE Alu 149 306 -7 952 282 113 28 chr12 13432857 13433354 -130849135 - MARNA DNA Mariner -39 547 9 23 68 0 0 chr12 13433616 13433660 -130848829 + AT_rich Low_complexity Low_complexity 1 44 0 1778 137 16 49 chr12 13433848 13434154 -130848335 + AluJo SINE Alu 3 298 -14 1683 169 26 30 chr12 13434158 13434460 -130848029 + AluJb SINE Alu 1 301 -11 180 0 0 0 chr12 13434534 13434554 -130847935 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 25 65 0 0 chr12 13434597 13434643 -130847846 + AT_rich Low_complexity Low_complexity 1 46 0 499 263 74 16 chr12 13435037 13435463 -130847026 + L1ME4a LINE L1 5350 5887 -234 2339 104 3 7 chr12 13435484 13435793 -130846696 - AluY SINE Alu -3 308 1 284 287 62 31 chr12 13436109 13436238 -130846251 + L2 LINE L2 3172 3304 -9 41 21 0 0 chr12 13436587 13436635 -130845854 + AT_rich Low_complexity Low_complexity 1 48 0 1573 146 0 8 chr12 13436831 13437070 -130845419 + AluJb SINE Alu 1 237 -75 2117 144 13 0 chr12 13437231 13437530 -130844959 + AluSx SINE Alu 1 303 -9 355 248 62 31 chr12 13437757 13437886 -130844603 - MIR SINE MIR -112 150 18 4392 155 79 13 chr12 13437892 13438736 -130843753 - L1MB5 LINE L1 0 6174 5275 6700 49 140 66 chr12 13438736 13439827 -130842662 - MER11A LTR ERVK 0 1266 1 1561 195 43 16 chr12 13439827 13440201 -130842288 - L1MB5 LINE L1 -866 5280 4897 261 0 0 0 chr12 13440299 13440328 -130842161 + (TTA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr12 13440328 13440351 -130842138 + AT_rich Low_complexity Low_complexity 1 23 0 2288 100 0 3 chr12 13440387 13440677 -130841812 - AluSx SINE Alu -19 293 5 584 138 0 0 chr12 13440770 13440864 -130841625 + L1PB3 LINE L1 6054 6147 -7 288 0 0 0 chr12 13442733 13442765 -130839724 + (CTAGT)n Simple_repeat Simple_repeat 5 36 0 269 227 127 18 chr12 13444019 13444129 -130838360 + MIR SINE MIR 74 195 -67 514 237 15 157 chr12 13444509 13444707 -130837782 + MER91A DNA MER1_type 1 170 -26 752 221 0 32 chr12 13444763 13444917 -130837572 - MER63A DNA MER1_type -2 208 60 2024 121 0 7 chr12 13445215 13445504 -130836985 - AluSx SINE Alu -25 287 1 255 128 0 0 chr12 13446139 13446178 -130836311 - MSTA LTR MaLR 0 428 390 782 69 0 0 chr12 13446178 13446279 -130836210 + AluY SINE Alu 211 311 0 2045 98 126 28 chr12 13446285 13446641 -130835848 - MSTA LTR MaLR -37 391 1 10359 156 32 2 chr12 13446641 13448244 -130834245 - MSTA-int LTR MaLR 0 1651 1 2107 134 161 13 chr12 13448244 13448617 -130833872 - MSTA LTR MaLR 0 428 1 1075 180 5 0 chr12 13449005 13449194 -130833295 - AluSg/x SINE Alu -5 307 118 839 132 25 0 chr12 13449242 13449363 -130833126 - FLAM_C SINE Alu -19 124 1 574 217 81 30 chr12 13449585 13449780 -130832709 + MER63 DNA MER1_type 1 1685 -3 366 171 299 0 chr12 13449810 13449927 -130832562 - MLT1L LTR MaLR -2 613 462 * 1527 87 9 39 chr12 13449901 13450085 -130832404 + MER41A LTR ERV1 244 421 -133 2357 110 0 0 chr12 13450085 13450393 -130832096 - AluSx SINE Alu -2 310 3 1527 87 9 39 chr12 13450393 13450438 -130832051 + MER41A LTR ERV1 421 466 -88 1360 244 111 28 chr12 13450452 13450608 -130831881 - MLT1L LTR MaLR -148 467 325 2575 82 102 3 chr12 13450608 13450951 -130831538 - MER51B LTR ERV1 0 377 1 1360 244 111 28 chr12 13450951 13451225 -130831264 - MLT1L LTR MaLR -290 325 1 1956 134 25 32 chr12 13451633 13451947 -130830542 - AluJb SINE Alu 0 312 1 2195 96 7 4 chr12 13451959 13452291 -130830198 - AluSx SINE Alu 0 333 1 2082 116 0 23 chr12 13452375 13452709 -130829780 + AluSx SINE Alu 1 327 0 1194 226 135 69 chr12 13452797 13453288 -130829201 + MLT1F1 LTR MaLR 1 525 -42 195 42 0 0 chr12 13453304 13453328 -130829161 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 835 213 0 52 chr12 13453331 13453505 -130828984 + FRAM SINE Alu 1 165 -1 608 140 83 102 chr12 13453505 13453662 -130828827 + MLT2C2 LTR ERVL 303 456 -8 454 278 113 0 chr12 13453662 13453813 -130828676 - MIR SINE MIR -94 168 1 794 171 16 0 chr12 13454489 13454618 -130827871 + FLAM_C SINE Alu 1 131 -2 21 0 0 0 chr12 13454618 13454639 -130827850 + AT_rich Low_complexity Low_complexity 1 21 0 1195 65 0 19 chr12 13455367 13455522 -130826967 + AluSg/x SINE Alu 83 234 -76 873 110 96 14 chr12 13455549 13455695 -130826794 - AluJo SINE Alu -125 187 30 2164 104 0 0 chr12 13455734 13456013 -130826476 + AluSg SINE Alu 1 279 -31 201 39 0 0 chr12 13456021 13456047 -130826442 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 2612 37 0 40 chr12 13456086 13456410 -130826079 + AluY SINE Alu 1 311 0 280 291 29 0 chr12 13456465 13456568 -130825921 + MIR3 SINE MIR 103 208 0 1966 133 31 0 chr12 13457442 13457735 -130824754 + AluSx SINE Alu 1 302 -10 2467 83 0 10 chr12 13458438 13458751 -130823738 + AluSx SINE Alu 1 310 -2 489 250 109 27 chr12 13458878 13459062 -130823427 + MIR SINE MIR 20 218 -44 772 197 8 0 chr12 13462387 13462514 -130819975 + FLAM_A SINE Alu 1 128 -5 2014 114 17 0 chr12 13463071 13463361 -130819128 - AluSx SINE Alu -17 295 1 30 0 0 0 chr12 13463552 13463582 -130818907 + AT_rich Low_complexity Low_complexity 1 30 0 2462 80 0 0 chr12 13463711 13464022 -130818467 + AluY SINE Alu 1 311 0 2318 48 62 0 chr12 13464628 13464920 -130817569 + AluY SINE Alu 1 310 -1 297 273 33 33 chr12 13465054 13465175 -130817314 - L2 LINE L2 -213 3059 2939 771 216 18 30 chr12 13465469 13465636 -130816853 - MER5B DNA MER1_type -6 172 8 212 352 48 24 chr12 13465663 13465788 -130816701 + L2 LINE L2 3137 3264 -8 2276 97 7 13 chr12 13466480 13466788 -130815701 + AluSx SINE Alu 1 306 -6 434 294 192 0 chr12 13466844 13466990 -130815499 + L2 LINE L2 3099 3272 0 1939 183 62 16 chr12 13467006 13467443 -130815046 + LTR37B LTR ERV1 9 465 -3 307 220 451 12 chr12 13467879 13468052 -130814437 - MIR SINE MIR -3 259 11 782 201 101 50 chr12 13468609 13468808 -130813681 - MER63A DNA MER1_type 0 210 2 960 132 0 0 chr12 13468973 13469102 -130813387 - FLAM_C SINE Alu -14 129 1 747 109 286 7 chr12 13469234 13469381 -130813108 - MER53 DNA DNA -1 188 1 620 278 84 0 chr12 13469447 13469638 -130812851 + MIR SINE MIR 9 215 -47 1916 121 0 25 chr12 13470108 13470390 -130812099 + AluSx SINE Alu 21 295 -17 2239 133 0 0 chr12 13471536 13471836 -130810653 + AluSx SINE Alu 1 300 -12 536 258 26 53 chr12 13471918 13472108 -130810381 - L2 LINE L2 -26 3287 3103 229 182 52 130 chr12 13472274 13472351 -130810138 + MLT1L LTR MaLR 217 287 -328 245 266 128 0 chr12 13472525 13472619 -130809870 + MLT1L LTR MaLR 510 615 0 434 295 175 66 chr12 13472619 13473030 -130809459 - L2 LINE L2 -234 3079 2616 2115 99 7 0 chr12 13473030 13473303 -130809186 + AluSx SINE Alu 30 304 -8 824 144 46 110 chr12 13473311 13473484 -130809005 + AluJo SINE Alu 86 247 -65 589 248 241 4 chr12 13473485 13473751 -130808738 - L2 LINE L2 -714 2600 2272 325 291 64 81 chr12 13473787 13474021 -130808468 - L2 LINE L2 0 3313 3084 3610 163 45 8 chr12 13474480 13475083 -130807406 + MLT1E2 LTR MaLR 2 626 0 184 242 0 0 chr12 13475228 13475261 -130807228 + MIR SINE MIR 30 62 -146 431 278 125 7 chr12 13475269 13475413 -130807076 + MIR3 SINE MIR 25 185 -23 243 197 113 28 chr12 13475889 13475960 -130806529 - L2 LINE L2 0 3272 3196 1420 109 5 0 chr12 13476276 13476468 -130806021 - AluSx SINE Alu -10 302 110 832 102 0 0 chr12 13476540 13476648 -130805841 - AluSx SINE Alu -204 108 1 2497 91 0 0 chr12 13476863 13477172 -130805317 + AluSx SINE Alu 1 309 -3 189 107 0 0 chr12 13477770 13477798 -130804691 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 532 105 13 0 chr12 13477799 13477875 -130804614 - MADE1 DNA Mariner -3 77 1 1809 179 0 0 chr12 13477877 13478168 -130804321 - AluSx SINE Alu -21 291 1 887 212 0 0 chr12 13478234 13478380 -130804109 + MER20 DNA MER1_type 2 147 -72 1091 179 0 36 chr12 13478384 13478579 -130803910 + AluJo SINE Alu 5 192 -120 619 191 19 0 chr12 13478636 13478741 -130803748 + AluJo SINE Alu 192 298 -14 418 85 32 106 chr12 13478746 13478840 -130803649 + MER20 DNA MER1_type 133 219 0 589 289 55 37 chr12 13478840 13479058 -130803431 + MIR SINE MIR 31 252 -10 657 230 0 18 chr12 13479073 13479238 -130803251 + L1ME4a LINE L1 5955 6116 -5 539 258 90 0 chr12 13479288 13479443 -130803046 + MIR SINE MIR 20 188 -74 1619 158 44 37 chr12 13479578 13479766 -130802723 - AluJb SINE Alu -12 300 108 2171 116 0 0 chr12 13479766 13480060 -130802429 - AluSx SINE Alu -18 294 1 1619 158 44 37 chr12 13480060 13480169 -130802320 - AluJb SINE Alu -204 108 1 211 340 110 0 chr12 13481538 13481638 -130800851 - L2 LINE L2 -5 3267 3157 1094 199 57 16 chr12 13482483 13482729 -130799760 + MIR SINE MIR 2 257 -5 25 0 0 0 chr12 13484125 13484150 -130798339 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr12 13485072 13485106 -130797383 + AT_rich Low_complexity Low_complexity 1 34 0 538 240 178 18 chr12 13485567 13485792 -130796697 - MIR SINE MIR 0 262 2 707 290 49 11 chr12 13486439 13486725 -130795764 + Charlie2 DNA MER1_type 23 319 -2463 499 228 31 16 chr12 13486732 13486859 -130795630 + Charlie2 DNA MER1_type 1855 1983 -879 981 171 0 13 chr12 13486884 13487042 -130795447 + FRAM SINE Alu 2 157 -9 780 254 132 31 chr12 13487042 13487397 -130795092 + L1MC4 LINE L1 7105 7495 -547 282 235 71 10 chr12 13487468 13487566 -130794923 + L1MC4 LINE L1 7492 7595 -447 2129 179 66 2 chr12 13487989 13488385 -130794104 - MSTA LTR MaLR 0 428 8 1771 181 136 78 chr12 13488686 13489172 -130793317 + MLT1F1 LTR MaLR 1 514 -53 240 267 0 0 chr12 13489208 13489268 -130793221 + MLT1F1 LTR MaLR 481 540 -2 227 104 21 0 chr12 13490221 13490269 -130792220 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 783 169 0 0 chr12 13491485 13491603 -130790886 - FLAM_C SINE Alu -14 119 2 2258 101 0 0 chr12 13492786 13493072 -130789417 - AluSg SINE Alu -24 286 1 789 194 61 6 chr12 13493091 13493256 -130789233 - MER5B DNA MER1_type 0 178 5 2548 57 0 25 chr12 13493260 13493577 -130788912 - AluY SINE Alu -2 309 1 355 257 193 7 chr12 13493680 13493820 -130788669 - MIR SINE MIR -62 200 35 315 0 0 0 chr12 13495411 13495446 -130787043 + (T)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chr12 13496224 13496248 -130786241 + (A)n Simple_repeat Simple_repeat 1 24 0 2234 96 7 3 chr12 13497688 13497980 -130784509 - AluSg SINE Alu -17 293 1 2392 85 0 3 chr12 13498131 13498424 -130784065 + AluSg SINE Alu 1 292 -18 664 176 0 0 chr12 13498585 13498693 -130783796 + FLAM_A SINE Alu 13 120 -22 324 269 103 0 chr12 13498950 13499028 -130783461 - MLT1L LTR MaLR -226 389 304 835 165 0 0 chr12 13499050 13499183 -130783306 - FLAM_C SINE Alu 0 133 1 231 167 0 0 chr12 13499203 13499245 -130783244 + CT-rich Low_complexity Low_complexity 2 43 0 1100 192 0 0 chr12 13499250 13499432 -130783057 - AluJb SINE Alu -4 308 127 300 265 13 29 chr12 13499435 13499572 -130782917 - MLT1J LTR MaLR -310 305 106 828 144 85 44 chr12 13499772 13500033 -130782456 + MER33 DNA MER1_type 5 363 0 1644 180 41 3 chr12 13500719 13501014 -130781475 + AluJb SINE Alu 1 306 -6 188 33 0 33 chr12 13501305 13501335 -130781154 + (AATAG)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr12 13501335 13501364 -130781125 + AT_rich Low_complexity Low_complexity 1 29 0 366 264 28 111 chr12 13502103 13502247 -130780242 + L2 LINE L2 3140 3271 -1 2292 116 0 0 chr12 13503290 13503592 -130778897 + AluSx SINE Alu 1 302 -10 485 88 0 0 chr12 13504184 13504252 -130778237 - Alu SINE Alu -12 299 232 1183 101 0 0 chr12 13504252 13504400 -130778089 + AluSp SINE Alu 148 295 -18 2015 141 0 13 chr12 13504621 13504920 -130777569 - AluJo SINE Alu -17 295 1 3059 260 87 23 chr12 13505184 13506571 -130775918 + L2 LINE L2 1826 3313 0 978 186 0 6 chr12 13506786 13506969 -130775520 - AluJo SINE Alu -9 303 122 1926 117 4 0 chr12 13507060 13507326 -130775163 - AluJo SINE Alu -2 310 44 185 245 133 41 chr12 13507701 13507799 -130774690 + MIR SINE MIR 84 190 -72 2312 94 0 7 chr12 13507837 13508134 -130774355 + AluSg1 SINE Alu 1 295 -14 1768 161 11 3 chr12 13508519 13508805 -130773684 - AluJo SINE Alu -20 292 5 2311 103 0 3 chr12 13509140 13509441 -130773048 + AluSq SINE Alu 1 300 -13 1550 190 38 14 chr12 13509621 13509911 -130772578 - AluJo SINE Alu -15 297 1 2157 101 39 0 chr12 13510093 13510379 -130772110 + AluSc SINE Alu 1 297 -12 873 232 52 69 chr12 13510417 13510729 -130771760 - MLT1J1 LTR MaLR -143 368 21 362 217 0 0 chr12 13510738 13510798 -130771691 + FRAM/FAM SINE Alu 31 90 -76 973 161 19 0 chr12 13511748 13511903 -130770586 - FRAM SINE Alu -19 157 1 949 245 98 60 chr12 13512029 13512128 -130770361 + L2 LINE L2 2730 2824 -489 2353 101 3 7 chr12 13512128 13512434 -130770055 - AluSx SINE Alu -7 305 1 949 245 98 60 chr12 13512434 13512607 -130769882 + L2 LINE L2 2824 2989 -324 2048 132 3 0 chr12 13512607 13512902 -130769587 - AluSx SINE Alu -16 296 1 949 245 98 60 chr12 13512902 13513191 -130769298 + L2 LINE L2 2989 3312 -1 498 297 34 11 chr12 13514762 13514937 -130767552 + MIR3 SINE MIR 15 193 -15 21 36 0 0 chr12 13515901 13515929 -130766560 + GC_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr12 13519571 13519611 -130762878 + AT_rich Low_complexity Low_complexity 1 40 0 1305 132 18 27 chr12 13519682 13519902 -130762587 - MER20 DNA MER1_type -1 218 1 23 33 0 0 chr12 13520983 13521013 -130761476 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chr12 13522358 13522382 -130760107 + (T)n Simple_repeat Simple_repeat 1 24 0 26 50 0 0 chr12 13523109 13523149 -130759340 + GC_rich Low_complexity Low_complexity 1 40 0 26 93 0 0 chr12 13523387 13523462 -130759027 + GC_rich Low_complexity Low_complexity 1 75 0 24 0 0 0 chr12 13523511 13523535 -130758954 + GC_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr12 13524081 13524103 -130758386 + GC_rich Low_complexity Low_complexity 1 22 0 26 74 0 0 chr12 13524304 13524358 -130758131 + GC_rich Low_complexity Low_complexity 1 54 0 237 196 0 0 chr12 13524429 13524480 -130758009 + (TG)n Simple_repeat Simple_repeat 2 52 0 42 48 0 0 chr12 13524704 13524767 -130757722 + GC_rich Low_complexity Low_complexity 1 63 0 228 163 0 0 chr12 13525227 13525270 -130757219 + A-rich Low_complexity Low_complexity 1 43 0 434 285 14 54 chr12 13525946 13526167 -130756322 + L3 LINE CR1 1364 1575 -2 1378 138 62 4 chr12 13526235 13526510 -130755979 + MER33 DNA MER1_type 34 324 0 1307 214 27 17 chr12 13526653 13526970 -130755519 - AluJo SINE Alu 0 321 2 198 0 0 0 chr12 13527026 13527048 -130755441 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1641 166 14 10 chr12 13527048 13527338 -130755151 - AluJo SINE Alu -21 291 1 2026 143 10 10 chr12 13527455 13527763 -130754726 + AluJb SINE Alu 1 308 -4 296 257 14 0 chr12 13527963 13528037 -130754452 + L1ME4a LINE L1 4502 4576 -1570 784 172 0 15 chr12 13528496 13528630 -130753859 - FLAM_C SINE Alu 0 133 2 714 164 153 63 chr12 13528631 13528820 -130753669 + AluJo SINE Alu 54 259 -53 193 29 59 0 chr12 13528832 13528866 -130753623 + (TAA)n Simple_repeat Simple_repeat 2 37 0 246 154 0 0 chr12 13528875 13528927 -130753562 + L1MB4 LINE L1 6129 6180 0 1549 171 107 0 chr12 13528948 13529098 -130753391 - AluJo SINE Alu -21 291 158 468 0 0 0 chr12 13529098 13529150 -130753339 + (TG)n Simple_repeat Simple_repeat 1 52 0 183 42 0 0 chr12 13529149 13529173 -130753316 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 1549 171 107 0 chr12 13529150 13529285 -130753204 - AluJo SINE Alu -154 158 1 292 311 73 46 chr12 13529369 13529470 -130753019 + MIR SINE MIR 12 109 -153 2282 121 0 0 chr12 13529470 13529783 -130752706 + AluSq SINE Alu 1 313 0 292 311 73 46 chr12 13529783 13529900 -130752589 + MIR SINE MIR 109 236 -26 2470 43 0 0 chr12 13529931 13530247 -130752242 + AluY SINE Alu 1 316 0 270 133 100 0 chr12 13530396 13530456 -130752033 + L1MB4 LINE L1 6113 6178 -2 376 230 90 22 chr12 13530573 13530751 -130751738 + L1ME4a LINE L1 5209 5398 -748 2206 107 0 17 chr12 13531530 13531829 -130750660 + AluSx SINE Alu 17 310 -2 1759 152 10 40 chr12 13532103 13532406 -130750083 + AluJb SINE Alu 1 294 -18 234 221 129 57 chr12 13532449 13532589 -130749900 + L1ME4a LINE L1 5881 6030 -91 2363 96 0 3 chr12 13532674 13532975 -130749514 - AluSx SINE Alu -12 300 1 215 239 45 30 chr12 13533585 13533652 -130748837 + MIR3 SINE MIR 134 201 -7 691 163 8 0 chr12 13534200 13534323 -130748166 + FLAM_A SINE Alu 19 142 0 239 314 145 17 chr12 13534380 13534703 -130747786 - L2 LINE L2 -171 3101 2737 1103 188 82 78 chr12 13534716 13534847 -130747642 + AluJo SINE Alu 4 133 -169 225 0 0 0 chr12 13534847 13534872 -130747617 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1103 188 82 78 chr12 13534872 13535033 -130747456 + AluJo SINE Alu 133 297 -5 1752 148 49 18 chr12 13535036 13535145 -130747344 + AluJb SINE Alu 15 119 -193 2167 115 20 3 chr12 13535145 13535449 -130747040 + AluSq SINE Alu 1 309 -4 1752 148 49 18 chr12 13535449 13535623 -130746866 + AluJb SINE Alu 119 307 -5 250 246 0 0 chr12 13537004 13537061 -130745428 - MIR SINE MIR -16 246 190 1854 159 10 13 chr12 13537274 13537575 -130744914 - AluJo SINE Alu -10 302 3 556 243 133 32 chr12 13537868 13538086 -130744403 + MLT1J LTR MaLR 272 511 0 2214 118 0 13 chr12 13538888 13539055 -130743434 - AluSx SINE Alu -12 300 137 2250 114 0 0 chr12 13539055 13539352 -130743137 - AluY SINE Alu -14 297 1 2214 118 0 13 chr12 13539352 13539488 -130743001 - AluSx SINE Alu -175 137 1 450 69 0 0 chr12 13539927 13539985 -130742504 + AluJ/FLAM SINE Alu 2 59 -253 1806 153 7 31 chr12 13540291 13540585 -130741904 - AluJo SINE Alu -25 287 1 220 254 260 34 chr12 13540793 13540970 -130741519 - MIR SINE MIR 0 262 46 1398 81 0 6 chr12 13541556 13541730 -130740759 + AluSg1 SINE Alu 1 173 -136 2476 78 3 0 chr12 13542313 13542619 -130739870 - AluSc SINE Alu -2 307 1 2583 57 7 0 chr12 13542854 13543155 -130739334 + AluY SINE Alu 1 303 -8 1882 167 16 0 chr12 13543732 13544038 -130738451 - AluJb SINE Alu -1 311 1 233 54 71 36 chr12 13544392 13544448 -130738041 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 2104 140 13 0 chr12 13544468 13544775 -130737714 - AluSx SINE Alu -1 311 1 1706 155 6 44 chr12 13545406 13545722 -130736767 + AluJo SINE Alu 1 304 -8 681 206 97 151 chr12 13546052 13546221 -130736268 - L2 LINE L2 0 3313 3137 926 129 0 0 chr12 13546221 13546353 -130736136 + FLAM_C SINE Alu 2 133 0 681 206 97 151 chr12 13546353 13546406 -130736083 - L2 LINE L2 -176 3137 3083 1818 194 53 55 chr12 13546406 13546912 -130735577 - MLT1D LTR MaLR 0 505 1 681 206 97 151 chr12 13546912 13547120 -130735369 - L2 LINE L2 -230 3083 2905 2160 110 20 10 chr12 13547129 13547428 -130735061 - AluSx SINE Alu -10 302 1 853 101 0 164 chr12 13547430 13547589 -130734900 - AluSq/x SINE Alu -180 133 1 3065 221 110 92 chr12 13547589 13548243 -130734246 - L2 LINE L2 -601 2713 2073 606 88 0 0 chr12 13548243 13548323 -130734166 + AluSc SINE Alu 2 81 -228 1981 117 0 0 chr12 13548323 13548588 -130733901 + AluSg1 SINE Alu 36 300 -9 3065 221 110 92 chr12 13548588 13548601 -130733888 - L2 LINE L2 -1241 2073 2062 1521 118 25 0 chr12 13548601 13548827 -130733662 + AluSc SINE Alu 72 302 0 3065 221 110 92 chr12 13548827 13549096 -130733393 - L2 LINE L2 -1252 2062 1800 2466 75 3 0 chr12 13549096 13549402 -130733087 - AluSc SINE Alu -2 307 1 3065 221 110 92 chr12 13549402 13549822 -130732667 - L2 LINE L2 -1514 1800 1247 627 148 0 0 chr12 13549873 13549974 -130732515 + FLAM_A SINE Alu 38 138 -4 2248 114 0 3 chr12 13549977 13550275 -130732214 + AluSx SINE Alu 1 297 -15 1339 296 84 18 chr12 13550314 13550828 -130731661 - LTR67 LTR ERVL -7 550 3 1988 108 54 11 chr12 13551033 13551312 -130731177 + AluSx SINE Alu 1 291 -21 192 347 97 48 chr12 13551932 13552056 -130730433 - L2 LINE L2 0 3272 3143 255 326 0 11 chr12 13552078 13552167 -130730322 - L2 LINE L2 -726 2588 2501 853 165 0 0 chr12 13552451 13552584 -130729905 + FLAM_C SINE Alu 1 133 0 2135 90 14 0 chr12 13552595 13552902 -130729587 + AluSg SINE Alu 1 311 0 388 331 137 23 chr12 13553022 13553409 -130729080 + L2 LINE L2 2354 2784 -530 2352 78 0 14 chr12 13553642 13553963 -130728526 + AluSq SINE Alu 11 313 0 960 221 32 47 chr12 13554496 13554597 -130727892 - ORSL DNA AcHobo -9 266 165 1680 132 117 8 chr12 13554597 13554862 -130727627 + AluSg1 SINE Alu 1 294 -15 802 166 25 25 chr12 13554869 13555032 -130727457 + FRAM SINE Alu 4 166 0 960 221 32 47 chr12 13555032 13555175 -130727314 - ORSL DNA AcHobo -116 159 18 2242 126 0 0 chr12 13556154 13556455 -130726034 - AluSx SINE Alu -11 301 1 312 91 0 0 chr12 13556942 13556986 -130725503 + (TA)n Simple_repeat Simple_repeat 1 44 0 2143 126 0 0 chr12 13557003 13557288 -130725201 - AluSx SINE Alu -27 285 1 4041 93 4 20 chr12 13557484 13558041 -130724448 - LTR14 LTR ERVK 0 548 1 2985 133 114 0 chr12 13558046 13558519 -130723970 + MER1A DNA MER1_type 1 527 0 450 224 119 48 chr12 13558519 13558729 -130723760 + L2 LINE L2 2626 2850 -464 2273 111 3 0 chr12 13558891 13559188 -130723301 - AluSx SINE Alu -14 298 1 354 303 201 15 chr12 13559622 13559797 -130722692 + L2 LINE L2 2925 3066 -247 1646 145 14 18 chr12 13559797 13560079 -130722410 - AluJb SINE Alu -21 291 11 354 303 201 15 chr12 13560079 13560227 -130722262 + L2 LINE L2 3066 3308 -5 664 272 65 23 chr12 13560944 13561161 -130721328 + MIR SINE MIR 28 253 -9 291 250 10 48 chr12 13561832 13561852 -130720637 + L3 LINE CR1 771 790 -787 2155 103 16 41 chr12 13561852 13562172 -130720317 - AluSx SINE Alu 0 312 1 291 250 10 48 chr12 13562172 13562255 -130720234 + L3 LINE CR1 790 870 -707 223 221 19 39 chr12 13562359 13562463 -130720026 + (TTA)n Simple_repeat Simple_repeat 2 103 0 298 233 0 0 chr12 13562479 13562539 -130719950 + L3 LINE CR1 1251 1310 -267 227 241 51 101 chr12 13562760 13562918 -130719571 - L2 LINE L2 -233 3039 2890 1499 149 58 0 chr12 13563405 13563681 -130718808 + L1MA7 LINE L1 5995 6286 -5 365 287 48 8 chr12 13564417 13564564 -130717925 - MIR SINE MIR -64 144 37 674 171 0 0 chr12 13564630 13564741 -130717748 + FLAM_C SINE Alu 5 115 -28 211 299 37 56 chr12 13564794 13564901 -130717588 - L2 LINE L2 -19 3294 3190 2499 65 0 0 chr12 13565435 13565729 -130716760 + AluY SINE Alu 1 294 -17 2310 124 11 8 chr12 13565844 13566198 -130716291 - THE1A LTR MaLR 0 355 1 295 292 132 7 chr12 13566275 13566419 -130716070 + L2 LINE L2 1948 2109 -1205 306 266 12 68 chr12 13566526 13566664 -130715825 + MER5A DNA MER1_type 27 167 -22 231 292 34 22 chr12 13566693 13566782 -130715707 + L2 LINE L2 2221 2310 -1004 2240 92 3 20 chr12 13567693 13567996 -130714493 - AluSp SINE Alu -15 298 1 233 182 0 0 chr12 13568292 13568336 -130714153 - L2 LINE L2 -9 3304 3261 1645 130 146 21 chr12 13570015 13570345 -130712144 - THE1C LTR MaLR -4 371 1 22 0 0 0 chr12 13571550 13571572 -130710917 + AT_rich Low_complexity Low_complexity 1 22 0 2173 57 23 66 chr12 13572161 13572462 -130710027 - AluY SINE Alu -23 288 1 953 206 37 32 chr12 13572488 13572706 -130709783 - MER20 DNA MER1_type 0 219 1 347 324 47 29 chr12 13572749 13572919 -130709570 - MIR SINE MIR -70 192 20 246 287 64 0 chr12 13573395 13573489 -130709000 + MIR SINE MIR 134 233 -29 1595 169 40 33 chr12 13573642 13573944 -130708545 - AluSx SINE Alu -8 304 1 1878 180 3 7 chr12 13573946 13574252 -130708237 - AluJo SINE Alu -7 305 1 351 326 37 7 chr12 13574637 13574772 -130707717 - MIR SINE MIR -75 187 49 335 246 32 63 chr12 13574861 13574987 -130707502 + MIR SINE MIR 79 200 -62 1802 141 10 87 chr12 13575008 13575060 -130707429 + MER46B DNA MER2_type 3 57 -2674 2170 82 65 0 chr12 13575060 13575352 -130707137 - AluSp SINE Alu -1 312 2 1802 141 10 87 chr12 13575352 13575688 -130706801 + MER46B DNA MER2_type 57 236 0 341 230 89 37 chr12 13575856 13575991 -130706498 - L1ME4a LINE L1 -3 6118 5977 615 273 128 54 chr12 13576016 13576500 -130705989 - L1ME4a LINE L1 -251 5870 5351 26 0 0 0 chr12 13577149 13577175 -130705314 + AT_rich Low_complexity Low_complexity 1 26 0 2199 79 7 39 chr12 13577366 13577671 -130704818 + AluY SINE Alu 1 295 -16 1938 159 10 0 chr12 13577825 13578120 -130704369 - AluJb SINE Alu -14 298 1 2196 127 7 0 chr12 13578122 13578429 -130704060 - AluSx SINE Alu -3 309 1 2182 118 3 0 chr12 13578431 13578720 -130703769 - AluSx SINE Alu -22 290 1 2379 45 18 0 chr12 13579215 13579501 -130702988 + AluY SINE Alu 1 291 -20 1499 231 56 31 chr12 13580444 13580854 -130701635 - MLT1C LTR MaLR -1 466 43 2335 100 39 30 chr12 13580854 13581215 -130701274 + THE1B LTR MaLR 1 364 0 1499 231 56 31 chr12 13581215 13581254 -130701235 - MLT1C LTR MaLR -424 43 6 2535 53 0 3 chr12 13581576 13581877 -130700612 + AluY SINE Alu 1 300 -11 317 181 0 28 chr12 13583140 13583212 -130699277 + MIR SINE MIR 80 149 -113 2151 123 24 0 chr12 13583242 13583535 -130698954 - AluSx SINE Alu -12 300 1 340 259 292 0 chr12 13583881 13584066 -130698423 + MIR SINE MIR 23 261 -1 210 330 62 9 chr12 13584090 13584202 -130698287 - MIR SINE MIR -144 118 1 195 129 0 0 chr12 13584208 13584239 -130698250 + (TG)n Simple_repeat Simple_repeat 2 32 0 1715 183 3 7 chr12 13585368 13585652 -130696837 + AluJo SINE Alu 5 287 -25 2489 76 3 0 chr12 13585829 13586131 -130696358 - AluSp SINE Alu -9 304 2 2227 108 3 3 chr12 13586597 13586892 -130695597 + AluSx SINE Alu 1 295 -17 1540 114 0 0 chr12 13587671 13587881 -130694608 + AluSg/x SINE Alu 85 294 -18 2040 125 3 3 chr12 13588501 13588788 -130693701 - AluSc SINE Alu -22 287 1 2186 127 0 0 chr12 13588792 13589092 -130693397 - AluSc SINE Alu -9 300 1 713 146 0 0 chr12 13589092 13589202 -130693287 - AluSg/x SINE Alu -5 307 198 445 152 25 0 chr12 13589675 13589754 -130692735 - L1ME LINE L1 -621 5541 5461 373 163 22 0 chr12 13589783 13589875 -130692614 + CT-rich Low_complexity Low_complexity 1 94 0 875 134 0 0 chr12 13589924 13590051 -130692438 + FLAM_C SINE Alu 5 131 -2 646 195 14 109 chr12 13590068 13590289 -130692200 - L1ME1 LINE L1 -58 6108 5909 1055 186 0 0 chr12 13590289 13590456 -130692033 - AluSp SINE Alu -13 300 134 714 175 21 0 chr12 13590456 13590599 -130691890 - L1ME1 LINE L1 -257 5909 5764 492 189 0 0 chr12 13590589 13590684 -130691805 - L1ME1 LINE L1 -2439 3707 3613 * 1551 99 5 24 chr12 13590684 13590896 -130691593 + AluSp SINE Alu 1 208 -105 898 111 16 0 chr12 13591014 13591169 -130691320 + AluSg/x SINE Alu 154 310 0 262 136 23 0 chr12 13591173 13591217 -130691272 + L1MC5 LINE L1 7023 7067 -894 3859 151 23 2 chr12 13591242 13591846 -130690643 - Tigger7 DNA MER2_type -1869 618 2 662 137 16 99 chr12 13591854 13592036 -130690453 - L1MC5 LINE L1 -995 6966 6800 186 103 0 0 chr12 13592146 13592175 -130690314 + (TTG)n Simple_repeat Simple_repeat 1 29 0 281 234 106 21 chr12 13592312 13592406 -130690083 + MLT1L LTR MaLR 167 268 -347 1591 147 43 0 chr12 13592665 13592946 -130689543 + AluJb SINE Alu 15 306 0 2204 96 0 3 chr12 13592952 13593255 -130689234 + AluSq SINE Alu 1 302 -11 321 308 29 58 chr12 13593286 13593458 -130689031 + L1ME LINE L1 5254 5420 -2388 262 219 143 0 chr12 13593458 13593563 -130688926 - L1MC/D LINE L1 -1993 5815 5696 466 292 23 41 chr12 13594075 13594294 -130688195 + L1ME LINE L1 5582 5796 -325 219 167 0 0 chr12 13594385 13594427 -130688062 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 288 0 0 0 chr12 13594427 13594459 -130688030 + (GA)n Simple_repeat Simple_repeat 2 33 0 1120 144 0 36 chr12 13594459 13594654 -130687835 - AluJo SINE Alu -39 273 86 419 285 100 102 chr12 13594654 13594948 -130687541 - LTR33A LTR ERVL -40 481 176 2138 120 0 3 chr12 13594948 13595249 -130687240 - AluSg SINE Alu -10 300 1 419 285 100 102 chr12 13595249 13595381 -130687108 - LTR33A LTR ERVL -345 176 45 1431 160 89 7 chr12 13595462 13595731 -130686758 + AluJb SINE Alu 3 293 -19 943 130 51 17 chr12 13595734 13595911 -130686578 - L1MA8 LINE L1 -5 6286 6104 555 262 0 8 chr12 13595913 13596039 -130686450 + MER2 DNA MER2_type 7 131 -214 1244 177 129 45 chr12 13596040 13596351 -130686138 - MER2 DNA MER2_type -1 344 8 420 133 36 0 chr12 13596358 13596441 -130686048 + MER2 DNA MER2_type 128 213 -132 2018 117 0 0 chr12 13596551 13596859 -130685630 - AluSx SINE Alu 0 308 1 640 112 65 0 chr12 13596859 13596966 -130685523 - L1MA8 LINE L1 -183 6108 5995 27 0 0 0 chr12 13597179 13597206 -130685283 + AT_rich Low_complexity Low_complexity 1 27 0 549 255 97 33 chr12 13597424 13597673 -130684816 - MLT1J2 LTR MaLR -11 427 169 574 190 10 0 chr12 13597699 13597799 -130684690 - MSTB1 LTR MaLR -77 355 255 797 153 0 0 chr12 13597830 13597948 -130684541 - FLAM_A SINE Alu -15 118 1 1864 151 3 10 chr12 13598185 13598496 -130683993 + AluJb SINE Alu 1 309 -3 1835 132 26 16 chr12 13599158 13599461 -130683028 + AluSx SINE Alu 1 306 -6 1967 143 0 0 chr12 13599560 13599853 -130682636 + AluSx SINE Alu 1 293 -19 1342 183 78 48 chr12 13599857 13599976 -130682513 - MER2 DNA MER2_type -1 343 229 1860 139 20 0 chr12 13599976 13600278 -130682211 + AluSx SINE Alu 1 308 -4 1342 183 78 48 chr12 13600278 13600392 -130682097 - MER2 DNA MER2_type -115 229 120 2092 97 7 3 chr12 13600392 13600681 -130681808 - AluSg SINE Alu -20 290 1 1342 183 78 48 chr12 13600681 13600779 -130681710 - MER2 DNA MER2_type -224 120 1 1506 191 20 7 chr12 13600947 13601075 -130681414 + AluJo SINE Alu 1 126 -186 216 0 0 0 chr12 13601075 13601099 -130681390 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1506 191 20 7 chr12 13601099 13601269 -130681220 + AluJo SINE Alu 126 303 -9 198 300 86 0 chr12 13601271 13601341 -130681148 - MIR SINE MIR -82 126 51 8857 128 89 25 chr12 13601476 13601542 -130680947 + L1MC1 LINE L1 4 64 -6362 1801 176 0 3 chr12 13601542 13601848 -130680641 + AluJb SINE Alu 1 305 -7 8857 128 89 25 chr12 13601848 13602724 -130679765 + L1MC1 LINE L1 64 883 -5543 2071 106 10 0 chr12 13602724 13603017 -130679472 + AluSg SINE Alu 1 296 -14 8857 128 89 25 chr12 13603017 13603839 -130678650 + L1MC1 LINE L1 883 1975 -4451 2883 207 44 9 chr12 13604304 13605532 -130676957 + L1MC1 LINE L1 1956 3229 -3197 1029 144 25 0 chr12 13605532 13605692 -130676797 + FRAM SINE Alu 1 163 -13 864 207 20 59 chr12 13605700 13605875 -130676614 + L1MC1 LINE L1 3228 3387 -3039 1480 188 4 7 chr12 13605875 13606146 -130676343 + AluJo SINE Alu 1 270 -42 864 207 20 59 chr12 13606146 13606274 -130676215 + L1MC1 LINE L1 3387 3519 -2907 5997 171 22 35 chr12 13606275 13606859 -130675630 + L1MC1 LINE L1 5006 5596 -1017 2101 131 0 3 chr12 13606859 13607171 -130675318 + AluSx SINE Alu 1 311 -1 5997 171 22 35 chr12 13607171 13608205 -130674284 + L1MC1 LINE L1 5596 6605 -8 1760 174 0 13 chr12 13608318 13608623 -130673866 + AluJo SINE Alu 5 305 -7 322 357 68 20 chr12 13609332 13609581 -130672908 + L1ME4a LINE L1 4689 4949 -1197 1014 137 23 137 chr12 13610098 13610361 -130672128 - MER46A DNA MER2_type 0 236 4 1653 152 9 61 chr12 13610495 13610824 -130671665 - AluJb SINE Alu 0 312 1 1715 158 0 35 chr12 13610905 13611222 -130671267 - AluJo SINE Alu -6 306 1 266 242 77 22 chr12 13611222 13611313 -130671176 + MLT1H LTR MaLR 110 205 -344 629 327 131 44 chr12 13611320 13612015 -130670474 + L2 LINE L2 2515 3267 -5 610 266 106 47 chr12 13612079 13612418 -130670071 + L1ME4a LINE L1 5534 5892 -229 21 71 0 0 chr12 13612645 13612687 -130669802 + AT_rich Low_complexity Low_complexity 1 42 0 185 193 88 35 chr12 13612727 13612784 -130669705 - L2 LINE L2 -8 3264 3205 911 122 6 45 chr12 13612844 13613000 -130669489 - AluJb SINE Alu -17 295 146 401 140 0 0 chr12 13613004 13613061 -130669428 - AluS SINE Alu -252 58 2 1772 152 16 10 chr12 13613168 13613478 -130669011 - AluJb SINE Alu 0 312 1 2086 102 27 3 chr12 13613755 13614050 -130668439 + AluSq SINE Alu 1 302 -11 868 93 93 47 chr12 13614968 13615140 -130667349 - AluSq SINE Alu -53 260 81 187 154 0 0 chr12 13615165 13615204 -130667285 + MIR SINE MIR 166 204 -58 225 214 0 0 chr12 13615205 13615247 -130667242 - Tigger5 DNA MER2_type -1 2322 2281 234 0 0 0 chr12 13615699 13615725 -130666764 + (TG)n Simple_repeat Simple_repeat 1 26 0 1422 199 28 92 chr12 13615741 13615965 -130666524 - MLT1A2 LTR MaLR 0 374 184 453 50 0 0 chr12 13615965 13616025 -130666464 + (GA)n Simple_repeat Simple_repeat 1 60 0 1422 199 28 92 chr12 13616025 13616192 -130666297 - MLT1A2 LTR MaLR -190 184 8 1211 83 10 57 chr12 13616328 13616543 -130665946 + AluY SINE Alu 99 304 0 1788 114 0 94 chr12 13616553 13616895 -130665594 + AluJo SINE Alu 1 310 -2 360 318 85 39 chr12 13616964 13617093 -130665396 + MIR SINE MIR 5 140 -68 337 269 130 19 chr12 13617220 13617328 -130665161 - MIR SINE MIR -110 152 33 1339 143 64 57 chr12 13618018 13618138 -130664351 + AluJb SINE Alu 1 119 -193 2173 100 3 0 chr12 13618138 13618427 -130664062 + AluSp SINE Alu 1 290 -23 1339 143 64 57 chr12 13618427 13618586 -130663903 + AluJb SINE Alu 119 282 -30 2389 71 0 0 chr12 13619138 13619448 -130663041 + AluY SINE Alu 1 310 -1 2084 105 26 0 chr12 13619960 13620264 -130662225 + AluSx SINE Alu 1 312 0 1570 110 42 4 chr12 13620605 13620842 -130661647 + AluSx SINE Alu 51 296 -16 224 296 68 11 chr12 13621018 13621106 -130661383 - MIR SINE MIR -46 216 124 1156 201 108 24 chr12 13621900 13622188 -130660301 - MLT1C LTR MaLR -17 450 139 207 304 79 95 chr12 13622312 13622343 -130660146 + L2 LINE L2 2851 2881 -391 1488 170 49 10 chr12 13622343 13622631 -130659858 - AluJo SINE Alu -11 301 3 207 304 79 95 chr12 13622631 13622852 -130659637 + L2 LINE L2 2881 3099 -173 2344 70 0 16 chr12 13622897 13623213 -130659276 - AluY SINE Alu 0 311 1 2162 112 0 7 chr12 13623268 13623572 -130658917 - AluSq SINE Alu -11 302 1 194 283 50 0 chr12 13624432 13624492 -130657997 - MIR3 SINE MIR -139 69 7 512 204 277 0 chr12 13624695 13624832 -130657657 + MER96 DNA MER1_type 1 175 0 852 142 14 0 chr12 13624939 13625087 -130657402 + FAM SINE Alu 1 47 -2 1247 154 34 44 chr12 13625431 13625724 -130656765 + MER33 DNA MER1_type 4 293 -31 1312 173 143 8 chr12 13625724 13625990 -130656499 + AluJo SINE Alu 1 302 0 782 212 24 18 chr12 13625995 13626160 -130656329 + FRAM SINE Alu 1 166 0 220 315 55 0 chr12 13626220 13626293 -130656196 - MIR3 SINE MIR -49 159 83 205 262 16 0 chr12 13627522 13627583 -130654906 + CT-rich Low_complexity Low_complexity 1 62 0 2245 84 3 0 chr12 13628434 13628731 -130653758 - AluSp SINE Alu -15 298 1 306 247 143 45 chr12 13629538 13629692 -130652797 - L1 LINE L1 -3279 2867 2699 569 219 138 109 chr12 13629739 13629799 -130652690 + MER58A DNA MER1_type 9 66 -2354 1995 79 11 29 chr12 13629799 13630115 -130652374 - AluSq SINE Alu 0 322 12 569 219 138 109 chr12 13630115 13630263 -130652226 + MER58A DNA MER1_type 66 224 0 349 281 18 82 chr12 13630359 13630479 -130652010 - L1 LINE L1 -3535 2611 2504 1712 180 0 0 chr12 13630479 13630773 -130651716 - AluJb SINE Alu -18 294 1 349 281 18 82 chr12 13630773 13630823 -130651666 - L1 LINE L1 -3642 2504 2452 488 181 65 7 chr12 13630837 13630975 -130651514 - AluSg/x SINE Alu -8 301 156 1897 144 0 0 chr12 13631292 13631577 -130650912 + AluSx SINE Alu 1 285 -27 210 37 0 0 chr12 13631584 13631611 -130650878 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 349 273 141 8 chr12 13631627 13631748 -130650741 + MER5B DNA MER1_type 1 137 -41 621 180 0 0 chr12 13631882 13632004 -130650485 + AluJb SINE Alu 183 304 0 2190 112 0 0 chr12 13632239 13632543 -130649946 + AluSx SINE Alu 1 304 -8 1928 129 0 7 chr12 13632618 13632928 -130649561 - AluSx SINE Alu 0 308 1 1794 161 13 7 chr12 13632939 13633249 -130649240 - AluJo SINE Alu 0 312 1 285 255 234 21 chr12 13637726 13637871 -130644618 + MIR SINE MIR 21 196 -66 879 230 5 11 chr12 13637891 13638078 -130644411 + MER5A DNA MER1_type 4 189 0 30 45 0 0 chr12 13638401 13638445 -130644044 + AT_rich Low_complexity Low_complexity 1 44 0 2161 100 0 7 chr12 13639320 13639620 -130642869 - AluSx SINE Alu -14 298 1 200 260 20 0 chr12 13639958 13640008 -130642481 + L2 LINE L2 3257 3307 -6 273 209 44 44 chr12 13641170 13641261 -130641228 - MLT1J LTR MaLR -383 128 38 599 261 156 18 chr12 13642304 13642522 -130639967 - MIR SINE MIR 0 262 15 2072 95 16 33 chr12 13642522 13642826 -130639663 - AluSx SINE Alu -9 303 5 2044 126 0 0 chr12 13642850 13643144 -130639345 - AluSq SINE Alu -19 294 1 1568 164 0 15 chr12 13643144 13643418 -130639071 + AluJb SINE Alu 27 296 -16 2205 94 17 0 chr12 13643602 13643900 -130638589 + AluSx SINE Alu 1 303 -9 599 261 156 18 chr12 13643900 13644118 -130638371 + MIR SINE MIR 15 262 0 1189 163 8 17 chr12 13644394 13644633 -130637856 + AluSx SINE Alu 17 253 -59 1343 142 58 0 chr12 13645065 13645290 -130637199 - AluJb SINE Alu -74 238 1 576 225 8 23 chr12 13645488 13645617 -130636872 + FLAM_A SINE Alu 1 127 -6 431 233 25 75 chr12 13645617 13645768 -130636721 + MLT1E2 LTR MaLR 95 239 -266 1877 196 35 51 chr12 13645817 13646270 -130636219 + MLT1D LTR MaLR 1 446 -59 1873 123 27 0 chr12 13646272 13646564 -130635925 + AluJo SINE Alu 1 300 -12 1895 95 0 0 chr12 13646565 13646818 -130635671 + AluSq SINE Alu 1 253 -60 1686 133 50 0 chr12 13647498 13647777 -130634712 + AluSx SINE Alu 1 293 -19 2207 81 0 0 chr12 13648452 13648776 -130633713 + AluSq SINE Alu 1 324 0 2014 147 28 17 chr12 13648879 13649234 -130633255 - L1PA16 LINE L1 -5 6161 5803 807 222 20 0 chr12 13649360 13649513 -130632976 - FRAM SINE Alu -10 156 1 842 102 177 0 chr12 13650735 13650882 -130631607 - L1MA4 LINE L1 -14 6286 6114 3713 140 44 16 chr12 13651541 13652149 -130630340 + MER51A LTR ERV1 1 625 -9 2303 91 3 0 chr12 13652329 13652638 -130629851 + AluSp SINE Alu 1 310 -3 1754 156 0 44 chr12 13653012 13653327 -130629162 - AluJb SINE Alu -11 301 1 1542 201 0 3 chr12 13653592 13653885 -130628604 - AluJb SINE Alu -16 296 5 2043 195 87 9 chr12 13653924 13654386 -130628103 + MLT1D LTR MaLR 1 498 -7 388 277 190 40 chr12 13655369 13655622 -130626867 + HAL1 LINE L1 821 1111 -1396 1607 144 10 48 chr12 13655622 13655935 -130626554 + AluJo SINE Alu 1 301 -11 275 257 92 9 chr12 13656042 13656151 -130626338 + HAL1 LINE L1 1405 1522 -985 1512 118 54 0 chr12 13656171 13656392 -130626097 + AluSx SINE Alu 1 233 -79 1512 169 4 4 chr12 13656573 13656845 -130625644 - AluSg SINE Alu -37 273 2 1822 98 48 41 chr12 13656878 13657173 -130625316 + AluSc SINE Alu 4 300 -9 438 206 0 0 chr12 13657226 13657294 -130625195 - Tigger7 DNA MER2_type 0 2487 2420 562 167 0 0 chr12 13657333 13657429 -130625060 + L1MB8 LINE L1 6077 6172 -6 417 231 103 51 chr12 13657445 13657640 -130624849 + L1ME3A LINE L1 5963 6167 -3 2178 110 0 0 chr12 13658024 13658323 -130624166 + AluSx SINE Alu 1 299 -13 1272 124 112 27 chr12 13658333 13658592 -130623897 + L1MB4 LINE L1 5894 6174 -6 895 133 17 69 chr12 13659066 13659239 -130623250 - MLT2C2 LTR ERVL 0 464 301 1696 179 3 3 chr12 13659244 13659552 -130622937 - AluJb SINE Alu -4 308 1 694 275 128 25 chr12 13659566 13660049 -130622440 - L1M4 LINE L1 -866 5280 4748 1833 133 3 23 chr12 13660051 13660353 -130622136 - AluJo SINE Alu -16 296 1 1828 116 67 0 chr12 13660380 13660665 -130621824 + AluSx SINE Alu 1 304 -8 311 226 21 0 chr12 13660746 13660826 -130621663 + AluJ/monomer SINE Alu 1 53 -249 213 121 0 0 chr12 13660875 13660908 -130621581 + (T)n Simple_repeat Simple_repeat 1 33 0 1948 141 0 0 chr12 13661217 13661514 -130620975 - AluSq SINE Alu -16 297 1 1962 109 0 0 chr12 13661655 13661922 -130620567 - AluSq SINE Alu -46 267 1 1783 157 0 17 chr12 13661922 13662221 -130620268 - AluJb SINE Alu -18 294 1 2029 137 0 3 chr12 13662620 13662926 -130619563 - AluSx SINE Alu -7 305 1 373 218 0 0 chr12 13663245 13663323 -130619166 - L1MCc LINE L1 -2554 4387 4310 1670 188 0 25 chr12 13663337 13663657 -130618832 - AluJo SINE Alu 0 312 1 1729 248 80 50 chr12 13663657 13663822 -130618667 - L1MCc LINE L1 -3167 3774 3615 1985 147 0 0 chr12 13663822 13664134 -130618355 + AluSx SINE Alu 1 312 0 1729 248 80 50 chr12 13664134 13664561 -130617928 - L1MCc LINE L1 -3326 3615 3202 2283 84 0 0 chr12 13664561 13664860 -130617629 + AluSg SINE Alu 1 299 -11 1729 248 80 50 chr12 13664860 13664907 -130617582 - L1MCc LINE L1 -3739 3202 3158 1868 168 3 0 chr12 13664907 13665210 -130617279 - AluSx SINE Alu -8 304 1 1729 248 80 50 chr12 13665210 13665369 -130617120 - L1MCc LINE L1 -3783 3158 2950 1256 176 0 9 chr12 13665373 13665595 -130616894 - AluJo SINE Alu -12 300 81 390 233 110 80 chr12 13665595 13665699 -130616790 - L1MCc LINE L1 -4130 2992 2893 2348 121 69 55 chr12 13665699 13665878 -130616611 + MSTA LTR MaLR 1 176 -252 2472 74 0 0 chr12 13665878 13666190 -130616299 + AluSx SINE Alu 1 312 0 2348 121 69 55 chr12 13666190 13666432 -130616057 + MSTA LTR MaLR 176 428 0 390 233 110 80 chr12 13666432 13666742 -130615747 - L1MCc LINE L1 -4229 2893 2594 1632 165 7 20 chr12 13666742 13667045 -130615444 + AluJo SINE Alu 1 299 -13 390 233 110 80 chr12 13667045 13667235 -130615254 - L1MCc LINE L1 -4528 2594 2343 2173 104 0 0 chr12 13667235 13667542 -130614947 + AluY SINE Alu 1 307 -4 390 233 110 80 chr12 13667542 13667597 -130614892 - L1MCc LINE L1 -4779 2343 2291 509 81 0 27 chr12 13667632 13667706 -130614783 - THE1B LTR MaLR 0 364 293 1023 76 0 0 chr12 13667706 13667837 -130614652 + AluY SINE Alu 1 131 -180 1008 130 37 0 chr12 13667844 13668006 -130614483 - THE1B LTR MaLR -58 306 139 1165 103 39 0 chr12 13668772 13668928 -130613561 - THE1B LTR MaLR -202 162 1 854 272 77 6 chr12 13668944 13669313 -130613176 - L1MCc LINE L1 -4840 2282 1678 1977 150 24 45 chr12 13669319 13669693 -130612796 + Tigger3b DNA MER2_type 1 366 -865 3997 106 41 26 chr12 13669693 13669729 -130612760 + Tigger3b DNA MER2_type 561 595 -2434 2054 129 10 3 chr12 13669729 13670039 -130612450 + AluSx SINE Alu 1 312 0 3997 106 41 26 chr12 13670039 13670229 -130612260 + Tigger3b DNA MER2_type 595 781 -2248 1934 124 11 0 chr12 13670229 13670544 -130611945 + AluSp SINE Alu 1 318 0 3997 106 41 26 chr12 13670544 13670975 -130611514 + Tigger3b DNA MER2_type 781 1230 -2 489 273 53 78 chr12 13670977 13671066 -130611423 - L1MCc LINE L1 -4889 1534 1444 2488 44 0 0 chr12 13671066 13671362 -130611127 - AluY SINE Alu -15 296 1 2181 106 0 3 chr12 13671369 13671671 -130610818 - AluSq SINE Alu -12 301 1 489 273 53 78 chr12 13671671 13671703 -130610786 - L1MCc LINE L1 -4985 1438 1407 2374 61 3 0 chr12 13671703 13671998 -130610491 - AluY SINE Alu -15 296 1 489 273 53 78 chr12 13671998 13672269 -130610220 - L1MCc LINE L1 -5016 1407 1272 772 198 48 210 chr12 13672537 13672870 -130609619 - L1MC4 LINE L1 -1134 6759 6396 222 250 0 97 chr12 13673612 13673684 -130608805 - L2 LINE L2 -2 3311 3247 2255 87 0 0 chr12 13673829 13674115 -130608374 + AluSg SINE Alu 1 286 -24 313 323 16 24 chr12 13674166 13674290 -130608199 + L2 LINE L2 33 155 -3159 1502 158 74 28 chr12 13674344 13674481 -130608008 + AluJb SINE Alu 1 130 -182 1942 117 3 3 chr12 13674481 13674799 -130607690 + AluSq SINE Alu 3 320 0 1502 158 74 28 chr12 13674799 13674945 -130607544 + AluJb SINE Alu 130 298 -14 186 43 0 0 chr12 13675142 13675165 -130607324 + (TA)n Simple_repeat Simple_repeat 2 24 0 196 350 51 51 chr12 13675181 13675298 -130607191 - L2 LINE L2 -18 3254 3138 2128 92 14 3 chr12 13675389 13675681 -130606808 - AluSg SINE Alu -15 295 1 21 0 0 0 chr12 13675714 13675735 -130606754 + AT_rich Low_complexity Low_complexity 1 21 0 2200 106 0 10 chr12 13675871 13676182 -130606307 - AluSx SINE Alu -2 310 3 600 228 55 0 chr12 13676265 13676431 -130606058 - L1ME1 LINE L1 -6 6160 6001 1302 187 15 89 chr12 13676457 13676650 -130605839 - AluJo SINE Alu 0 302 96 185 62 0 31 chr12 13676650 13676682 -130605807 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1875 145 0 0 chr12 13676682 13676965 -130605524 - AluJo SINE Alu -29 283 1 1302 187 15 89 chr12 13676965 13677096 -130605393 - AluJo SINE Alu -204 98 1 334 344 0 0 chr12 13677102 13677192 -130605297 - L1MC4 LINE L1 -1339 6703 6614 * 377 300 0 0 chr12 13677158 13677248 -130605241 + L1MC4 LINE L1 6614 6703 -1339 359 244 8 89 chr12 13677206 13677272 -130605217 - L1MC3 LINE L1 -1139 6646 6593 * 2108 88 0 14 chr12 13677272 13677555 -130604934 - AluSg SINE Alu -31 279 1 359 244 8 89 chr12 13677555 13677611 -130604878 - L1MC3 LINE L1 -1192 6593 6534 1321 83 78 29 chr12 13678457 13678661 -130603828 - AluSg/x SINE Alu -18 292 79 187 154 0 0 chr12 13678686 13678725 -130603764 + MIR SINE MIR 166 204 -58 269 203 0 17 chr12 13678726 13678785 -130603704 - Tigger5 DNA MER2_type -1 2322 2265 232 241 0 0 chr12 13678768 13678822 -130603667 - Tigger5 DNA MER2_type -2269 54 1 * 1692 152 30 10 chr12 13678906 13679203 -130603286 - AluJb SINE Alu 0 312 10 2315 57 0 0 chr12 13679382 13679687 -130602802 + AluY SINE Alu 1 305 0 627 263 98 24 chr12 13679935 13680140 -130602349 - MIR SINE MIR 0 262 43 2395 112 102 37 chr12 13680146 13680386 -130602103 - MSTA LTR MaLR 0 428 150 2155 112 0 0 chr12 13680386 13680689 -130601800 + AluSx SINE Alu 1 303 -9 2395 112 102 37 chr12 13680689 13680850 -130601639 - MSTA LTR MaLR -278 150 1 2383 53 7 3 chr12 13680867 13681168 -130601321 + AluY SINE Alu 1 302 -9 840 300 17 101 chr12 13681433 13681750 -130600739 + L2 LINE L2 2886 3161 -111 2724 3 0 0 chr12 13681750 13682052 -130600437 + AluYa8 SINE Alu 1 302 -8 840 300 17 101 chr12 13682052 13682151 -130600338 + L2 LINE L2 3161 3267 -5 25 31 0 0 chr12 13682552 13682584 -130599905 + AT_rich Low_complexity Low_complexity 1 32 0 1746 194 50 31 chr12 13682709 13682889 -130599600 + MLT1C LTR MaLR 1 176 -291 1760 118 0 0 chr12 13682889 13683135 -130599354 + AluSc SINE Alu 39 284 -25 189 0 0 0 chr12 13683135 13683156 -130599333 + (GA)n Simple_repeat Simple_repeat 2 22 0 1746 194 50 31 chr12 13683156 13683432 -130599057 + MLT1C LTR MaLR 175 467 0 1010 165 0 0 chr12 13683444 13683608 -130598881 - AluJb SINE Alu -14 298 135 2125 89 0 35 chr12 13684169 13684483 -130598006 - AluSx SINE Alu -9 303 1 1289 86 6 0 chr12 13684494 13684669 -130597820 + AluSq SINE Alu 130 305 -8 736 204 80 11 chr12 13684704 13684880 -130597609 + LTR41 LTR ERVL 1 188 -585 341 307 83 44 chr12 13685250 13685478 -130597011 + LTR41 LTR ERVL 508 744 -29 247 154 19 19 chr12 13685500 13685552 -130596937 + LTR33A LTR ERVL 472 523 0 279 291 13 0 chr12 13686015 13686094 -130596395 + MIR SINE MIR 164 243 -19 471 35 0 0 chr12 13686113 13686170 -130596319 + (TTCA)n Simple_repeat Simple_repeat 3 59 0 288 295 116 0 chr12 13686173 13686268 -130596221 - L2 LINE L2 -22 3250 3145 2180 103 0 0 chr12 13686619 13686921 -130595568 - AluSq SINE Alu -10 303 2 2293 81 11 73 chr12 13686921 13687069 -130595420 - L1P4 LINE L1 -553 5612 5456 2137 84 7 10 chr12 13687069 13687367 -130595122 + AluSx SINE Alu 2 298 -14 2293 81 11 73 chr12 13687367 13687588 -130594901 - L1P4 LINE L1 -709 5456 5266 521 274 29 39 chr12 13687588 13687792 -130594697 - MLT1F LTR MaLR -338 204 3 357 243 35 69 chr12 13687806 13687950 -130594539 - L2 LINE L2 -207 3065 2927 * 492 267 61 14 chr12 13687946 13688131 -130594358 + MIR SINE MIR 18 212 -40 188 213 106 0 chr12 13688195 13688242 -130594247 + MIR SINE MIR 211 262 0 2071 92 61 0 chr12 13688322 13688616 -130593873 + AluSx SINE Alu 1 312 0 315 314 31 71 chr12 13688617 13688739 -130593750 - L2 LINE L2 -453 2861 2736 1789 148 3 0 chr12 13688739 13689029 -130593460 - AluJb SINE Alu -21 291 1 315 314 31 71 chr12 13689029 13689231 -130593258 - L2 LINE L2 -578 2736 2550 1854 130 41 0 chr12 13690243 13690535 -130591954 - AluSx SINE Alu -8 304 1 181 280 40 0 chr12 13690644 13690694 -130591795 - MIR SINE MIR -123 139 88 420 292 84 7 chr12 13690743 13690897 -130591592 - MIR SINE MIR -49 213 48 199 351 99 9 chr12 13690973 13691084 -130591405 + L2 LINE L2 3149 3269 -3 392 297 23 8 chr12 13691482 13691610 -130590879 + MIR SINE MIR 90 219 -43 2046 124 0 3 chr12 13691720 13692018 -130590471 - AluSx SINE Alu -15 297 1 2495 69 25 3 chr12 13692194 13692512 -130589977 + LTR8 LTR ERV1 1 325 -366 180 0 0 0 chr12 13693171 13693191 -130589298 + (A)n Simple_repeat Simple_repeat 1 20 0 2904 85 11 0 chr12 13693191 13693566 -130588923 + LTR8 LTR ERV1 313 691 0 2511 78 0 0 chr12 13693735 13694043 -130588446 + AluY SINE Alu 1 308 -3 217 250 87 54 chr12 13694077 13694169 -130588320 + L2 LINE L2 3201 3295 -18 369 247 59 0 chr12 13695182 13695267 -130587222 + MIR SINE MIR 99 188 -74 2230 124 0 0 chr12 13695496 13695803 -130586686 + AluSx SINE Alu 1 307 -5 186 203 116 58 chr12 13695856 13695925 -130586564 - L3 LINE CR1 -847 730 658 1064 211 59 30 chr12 13696064 13696221 -130586268 - AluJo SINE Alu -9 303 135 2338 89 0 13 chr12 13696221 13696534 -130585955 - AluSg SINE Alu -1 309 1 1064 211 59 30 chr12 13696534 13696613 -130585876 - AluJo SINE Alu -177 135 60 234 0 0 0 chr12 13696670 13696696 -130585793 + (TG)n Simple_repeat Simple_repeat 1 26 0 1319 201 28 92 chr12 13696712 13696936 -130585553 - MLT1A2 LTR MaLR 0 374 184 453 50 0 0 chr12 13696936 13696996 -130585493 + (GA)n Simple_repeat Simple_repeat 1 60 0 1319 201 28 92 chr12 13696996 13697163 -130585326 - MLT1A2 LTR MaLR -190 184 8 1297 88 10 62 chr12 13697298 13697514 -130584975 + AluSg/x SINE Alu 100 305 0 1936 114 0 94 chr12 13697524 13697866 -130584623 + AluJo SINE Alu 1 310 -2 365 318 85 39 chr12 13697935 13698064 -130584425 + MIR SINE MIR 5 140 -68 336 269 130 19 chr12 13698191 13698299 -130584190 - MIR SINE MIR -110 152 33 1463 143 64 57 chr12 13698989 13699109 -130583380 + AluJb SINE Alu 1 119 -193 2317 100 3 0 chr12 13699109 13699398 -130583091 + AluSp SINE Alu 1 290 -23 1463 143 64 57 chr12 13699398 13699557 -130582932 + AluJb SINE Alu 119 282 -30 2537 71 0 0 chr12 13700109 13700419 -130582070 + AluY SINE Alu 1 310 -1 2234 105 26 0 chr12 13700931 13701235 -130581254 + AluSx SINE Alu 1 312 0 1686 110 42 4 chr12 13701576 13701813 -130580676 + AluSx SINE Alu 51 296 -16 225 296 68 11 chr12 13701989 13702077 -130580412 - MIR SINE MIR -46 216 124 1076 201 108 24 chr12 13702871 13703159 -130579330 - MLT1C LTR MaLR -17 450 139 224 304 79 95 chr12 13703283 13703314 -130579175 + L2 LINE L2 2851 2881 -391 1632 170 49 10 chr12 13703314 13703602 -130578887 - AluJo SINE Alu -11 301 3 224 304 79 95 chr12 13703602 13703823 -130578666 + L2 LINE L2 2881 3099 -173 2494 70 0 16 chr12 13703868 13704184 -130578305 - AluY SINE Alu 0 311 1 2315 112 0 7 chr12 13704239 13704543 -130577946 - AluSq SINE Alu -11 302 1 195 283 50 0 chr12 13705403 13705463 -130577026 - MIR3 SINE MIR -139 69 7 535 204 277 0 chr12 13705666 13705803 -130576686 + MER96 DNA MER1_type 1 175 0 926 142 14 0 chr12 13705910 13706058 -130576431 + FAM SINE Alu 1 47 -2 1179 154 34 44 chr12 13706402 13706695 -130575794 + MER33 DNA MER1_type 4 293 -31 1343 184 139 4 chr12 13706695 13706961 -130575528 + AluJo SINE Alu 1 302 0 811 212 24 18 chr12 13706966 13707131 -130575358 + FRAM SINE Alu 1 166 0 225 315 55 0 chr12 13707191 13707264 -130575225 - MIR3 SINE MIR -49 159 83 205 262 16 0 chr12 13708493 13708554 -130573935 + CT-rich Low_complexity Low_complexity 1 62 0 2389 84 3 0 chr12 13709405 13709702 -130572787 - AluSp SINE Alu -15 298 1 180 238 167 12 chr12 13710144 13710228 -130572261 + MIR SINE MIR 37 133 -75 310 247 143 45 chr12 13710509 13710663 -130571826 - L1 LINE L1 -3279 2867 2699 513 219 138 109 chr12 13710710 13710770 -130571719 + MER58A DNA MER1_type 9 66 -2354 2126 79 11 29 chr12 13710770 13711086 -130571403 - AluSq SINE Alu 0 322 12 513 219 138 109 chr12 13711086 13711234 -130571255 + MER58A DNA MER1_type 66 224 0 536 251 12 176 chr12 13711330 13711447 -130571042 - L1 LINE L1 -3535 2611 2477 1864 182 0 0 chr12 13711447 13711744 -130570745 - AluJb SINE Alu -15 297 1 536 251 12 176 chr12 13711744 13711808 -130570681 - L1 LINE L1 -3669 2477 2404 2675 52 0 0 chr12 13711808 13712113 -130570376 - AluY SINE Alu -6 305 1 536 251 12 176 chr12 13712113 13712420 -130570069 - L1 LINE L1 -3742 2404 2202 186 320 120 20 chr12 13712544 13712644 -130569845 - L2 LINE L2 -865 2449 2340 2451 63 3 50 chr12 13712732 13713051 -130569438 + AluY SINE Alu 1 304 -7 1959 173 0 3 chr12 13713982 13714283 -130568206 + AluSx SINE Alu 3 302 -10 2107 132 0 3 chr12 13714642 13714945 -130567544 - AluSx SINE Alu -10 302 1 319 250 74 9 chr12 13715020 13715128 -130567361 + L2 LINE L2 2175 2289 -1025 555 240 147 5 chr12 13715132 13715286 -130567203 + MIR SINE MIR 17 217 -45 2009 136 16 13 chr12 13715286 13715594 -130566895 + AluJo SINE Alu 1 309 -3 555 240 147 5 chr12 13715594 13715627 -130566862 + MIR SINE MIR 217 244 -18 225 357 159 0 chr12 13715656 13715813 -130566676 + L2 LINE L2 2298 2479 -835 22 0 0 0 chr12 13715910 13715932 -130566557 + AT_rich Low_complexity Low_complexity 1 22 0 1775 149 6 43 chr12 13716051 13716374 -130566115 - AluJo SINE Alu -1 311 1 305 269 69 91 chr12 13716540 13716715 -130565774 + MIR SINE MIR 73 243 -19 314 266 129 48 chr12 13717374 13717498 -130564991 - MIR3 SINE MIR -16 192 59 279 314 0 0 chr12 13717554 13717624 -130564865 + polypyrimidine Low_complexity Low_complexity 5 74 0 2458 69 26 3 chr12 13717651 13717957 -130564532 + AluSp SINE Alu 1 313 0 300 296 126 37 chr12 13718578 13718713 -130563776 - L2 LINE L2 -2 3270 3124 189 0 0 0 chr12 13718798 13718819 -130563670 + (A)n Simple_repeat Simple_repeat 1 21 0 626 221 100 48 chr12 13719393 13719516 -130562973 + L1MC5 LINE L1 7586 7701 -260 1726 168 3 30 chr12 13719516 13719820 -130562669 + AluJo SINE Alu 1 296 -16 2418 94 3 0 chr12 13719821 13720130 -130562359 + AluSp SINE Alu 1 310 -3 626 221 100 48 chr12 13720130 13720294 -130562195 + L1MC5 LINE L1 7700 7890 -71 1715 177 0 35 chr12 13720305 13720622 -130561867 - AluJo SINE Alu -6 306 1 365 256 132 25 chr12 13721534 13721655 -130560834 + L2 LINE L2 3137 3270 -2 207 197 13 26 chr12 13721765 13721841 -130560648 + (TA)n Simple_repeat Simple_repeat 2 76 0 2326 91 17 0 chr12 13721920 13722216 -130560273 - AluSx SINE Alu -11 301 1 243 218 36 0 chr12 13723014 13723069 -130559420 + GA-rich Low_complexity Low_complexity 2 58 0 923 234 40 5 chr12 13723110 13723311 -130559178 + MIR SINE MIR 9 216 -46 1712 123 56 15 chr12 13723323 13723591 -130558898 + AluJb SINE Alu 1 279 -33 2263 83 16 22 chr12 13723808 13724120 -130558369 + AluSp SINE Alu 1 310 -3 1774 84 0 17 chr12 13724229 13724466 -130558023 + AluY SINE Alu 79 311 0 1760 177 18 0 chr12 13724685 13724962 -130557527 - AluJo SINE Alu -30 282 1 279 358 93 0 chr12 13726257 13726408 -130556081 - MIR3 SINE MIR -7 201 37 927 132 0 22 chr12 13726852 13726988 -130555501 + FLAM_C SINE Alu 1 133 0 2320 104 0 7 chr12 13727908 13728206 -130554283 - AluSg SINE Alu -14 296 1 2564 72 0 0 chr12 13728518 13728823 -130553666 - AluY SINE Alu -6 305 1 255 253 315 14 chr12 13728915 13729061 -130553428 - L2 LINE L2 0 3313 3124 922 201 0 0 chr12 13729857 13730021 -130552468 - AluJo SINE Alu -2 300 137 2126 122 0 14 chr12 13731551 13731955 -130550534 - AluSx SINE Alu 0 400 1 1309 128 21 0 chr12 13732053 13732240 -130550249 - AluJo SINE Alu -9 303 113 743 117 83 17 chr12 13732410 13732530 -130549959 - AluJo SINE Alu -183 129 2 243 88 0 0 chr12 13732643 13732677 -130549812 + (TCC)n Simple_repeat Simple_repeat 3 36 0 964 86 0 149 chr12 13732677 13732851 -130549638 - AluSg SINE Alu -162 148 1 438 69 0 0 chr12 13734248 13734306 -130548183 + (TG)n Simple_repeat Simple_repeat 1 58 0 209 309 36 82 chr12 13734376 13734486 -130548003 - MIR3 SINE MIR -15 193 89 207 293 0 40 chr12 13734599 13734674 -130547815 + CT-rich Low_complexity Low_complexity 2 73 0 28 0 0 0 chr12 13735101 13735129 -130547360 + AT_rich Low_complexity Low_complexity 1 28 0 1725 151 34 40 chr12 13735133 13735431 -130547058 - AluJb SINE Alu -16 296 1 1948 150 3 19 chr12 13735526 13735833 -130546656 - AluJo SINE Alu -6 306 5 2439 84 3 7 chr12 13736459 13736769 -130545720 - AluSp SINE Alu -4 309 1 1241 321 153 13 chr12 13736772 13737470 -130545019 + L3 LINE CR1 466 1261 -316 650 265 11 95 chr12 13737457 13737509 -130544980 - MIR SINE MIR -4 258 203 * 2368 74 3 0 chr12 13737509 13737828 -130544661 - AluSq SINE Alu 0 320 1 650 265 11 95 chr12 13737828 13737886 -130544603 - MIR SINE MIR -59 203 142 2510 54 3 3 chr12 13737886 13738180 -130544309 - AluSp SINE Alu -19 294 1 650 265 11 95 chr12 13738180 13738331 -130544158 - MIR SINE MIR -120 142 17 318 67 0 0 chr12 13739170 13739215 -130543274 + (A)n Simple_repeat Simple_repeat 1 45 0 2339 99 0 16 chr12 13739603 13739915 -130542574 + AluSg SINE Alu 1 307 -3 496 147 0 0 chr12 13740367 13740434 -130542055 + (TCCC)n Simple_repeat Simple_repeat 2 71 -5 2312 97 7 0 chr12 13740434 13740742 -130541747 - AluY SINE Alu -1 310 1 496 147 0 0 chr12 13740742 13740749 -130541740 + (TCCC)n Simple_repeat Simple_repeat 70 76 0 1167 83 0 17 chr12 13740757 13740844 -130541645 + (TTCC)n Simple_repeat Simple_repeat 1 263 0 1167 83 0 17 chr12 13740844 13741025 -130541464 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 1048 181 9 62 chr12 13741111 13741321 -130541168 - AluJo SINE Alu -113 199 1 731 172 0 0 chr12 13741713 13741835 -130540654 - FLAM_A SINE Alu -1 141 20 2040 107 43 17 chr12 13741857 13742157 -130540332 - AluSg SINE Alu -2 308 1 392 241 89 9 chr12 13742225 13742337 -130540152 + L2 LINE L2 3158 3278 -35 2096 125 26 10 chr12 13742850 13743153 -130539336 - AluSq SINE Alu -3 310 3 464 284 49 19 chr12 13743603 13743765 -130538724 - MER5A DNA MER1_type 0 189 23 2341 137 20 29 chr12 13744202 13744611 -130537878 + MER50 LTR ERV1 1 405 -329 265 74 19 74 chr12 13744635 13744689 -130537800 + MER50 LTR ERV1 355 405 -329 1730 115 18 25 chr12 13744713 13744992 -130537497 + MER50 LTR ERV1 355 631 -103 316 123 41 27 chr12 13744995 13745068 -130537421 + MER96B DNA MER1_type? 103 176 -241 267 152 0 0 chr12 13745210 13745256 -130537233 + (TA)n Simple_repeat Simple_repeat 2 47 0 315 311 0 0 chr12 13745260 13745350 -130537139 + L1MC4 LINE L1 6614 6703 -1339 309 279 35 0 chr12 13745327 13745413 -130537076 - L1MC4 LINE L1 -1340 6702 6614 * 472 149 21 0 chr12 13745416 13745510 -130536979 + (TA)n Simple_repeat Simple_repeat 1 96 0 225 200 21 53 chr12 13745510 13745605 -130536884 + L1MC4 LINE L1 6612 6703 -1339 267 130 0 0 chr12 13745607 13745653 -130536836 - L1MC4 LINE L1 -1339 6703 6658 858 225 0 0 chr12 13745709 13745869 -130536620 - AluJ SINE Alu -22 290 131 1881 154 3 3 chr12 13745889 13746174 -130536315 - AluJo SINE Alu -27 285 1 847 130 23 8 chr12 13746195 13746326 -130536163 - AluJ SINE Alu -169 133 1 288 0 0 0 chr12 13746380 13746412 -130536077 + (TA)n Simple_repeat Simple_repeat 1 32 0 2164 128 0 7 chr12 13746413 13746717 -130535772 - AluSx SINE Alu -10 302 1 242 211 0 19 chr12 13746816 13746868 -130535621 + MER96B DNA MER1_type? 193 243 -174 287 318 54 16 chr12 13747115 13747244 -130535245 + MER91A DNA MER1_type 28 161 -35 382 286 0 9 chr12 13747448 13747553 -130534936 - MER5C DNA MER1_type -212 112 9 852 288 125 14 chr12 13747830 13748198 -130534291 - MLT1I LTR MaLR 0 409 1 23 0 0 0 chr12 13748500 13748523 -130533966 + AT_rich Low_complexity Low_complexity 1 23 0 315 85 0 0 chr12 13748523 13748570 -130533919 + (TG)n Simple_repeat Simple_repeat 2 48 0 2063 101 36 26 chr12 13748844 13749152 -130533337 - AluSq SINE Alu -2 311 1 2255 113 0 3 chr12 13749254 13749554 -130532935 - AluSg SINE Alu -11 299 1 1730 158 28 14 chr12 13749783 13750068 -130532421 + AluJo SINE Alu 1 289 -23 2403 63 3 0 chr12 13750396 13750683 -130531806 + AluY SINE Alu 15 302 -9 3853 156 21 8 chr12 13750825 13751487 -130531002 - LTR51 LTR ERV1 0 671 1 239 268 205 9 chr12 13751529 13751641 -130530848 + MARNA DNA Mariner 400 533 -53 2109 130 58 14 chr12 13751659 13752021 -130530468 - MER83B LTR ERV1 0 378 1 258 158 0 0 chr12 13752642 13752680 -130529809 - tRNA-Ile-ATT tRNA tRNA -38 39 2 23 0 0 0 chr12 13752699 13752722 -130529767 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr12 13752811 13752835 -130529654 + AT_rich Low_complexity Low_complexity 1 24 0 914 127 0 0 chr12 13752893 13753011 -130529478 + AluJb SINE Alu 1 118 -194 2232 113 3 7 chr12 13753011 13753320 -130529169 - AluSx SINE Alu -4 308 1 751 163 57 0 chr12 13753425 13753566 -130528923 - FRAM SINE Alu 0 176 28 1546 136 147 0 chr12 13753696 13753947 -130528542 + AluJo SINE Alu 3 290 -12 31 0 0 0 chr12 13753955 13753986 -130528503 + AT_rich Low_complexity Low_complexity 1 31 0 2423 64 0 0 chr12 13754428 13754733 -130527756 + AluSc SINE Alu 1 305 0 2256 95 0 49 chr12 13755327 13755652 -130526837 + AluSx SINE Alu 1 309 -3 325 295 0 19 chr12 13755663 13755768 -130526721 + MIR3 SINE MIR 14 116 -92 217 250 0 0 chr12 13755877 13755925 -130526564 + L2 LINE L2 3214 3261 -11 317 309 145 0 chr12 13756112 13756264 -130526225 + MIR3 SINE MIR 8 181 -27 4035 128 45 25 chr12 13756720 13757429 -130525060 + L1MB2 LINE L1 5448 6170 -1 2093 137 3 0 chr12 13757953 13758246 -130524243 - AluSx SINE Alu -18 294 1 2257 87 0 0 chr12 13759488 13759763 -130522726 + AluSx SINE Alu 1 275 -37 531 176 44 0 chr12 13760036 13760127 -130522362 - AluJ/FLAM SINE Alu -212 100 6 268 313 15 0 chr12 13760216 13760283 -130522206 + L2 LINE L2 3123 3190 -82 401 253 94 74 chr12 13760372 13760574 -130521915 + MIR SINE MIR 17 222 -40 21 0 0 0 chr12 13760660 13760681 -130521808 + AT_rich Low_complexity Low_complexity 1 21 0 725 186 16 16 chr12 13761190 13761319 -130521170 - AluJo SINE Alu -63 249 121 1148 103 0 6 chr12 13761771 13761946 -130520543 + (TTCC)n Simple_repeat Simple_repeat 1 174 0 352 181 24 0 chr12 13761947 13762030 -130520459 + T-rich Low_complexity Low_complexity 5 89 0 1973 135 23 3 chr12 13762037 13762340 -130520149 - AluSq SINE Alu -4 309 1 310 310 150 9 chr12 13763102 13763315 -130519174 - L3b LINE CR1 -127 1456 1214 1078 121 0 11 chr12 13763328 13763510 -130518979 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2072 121 0 0 chr12 13763510 13763790 -130518699 - AluSx SINE Alu -32 280 1 236 286 33 0 chr12 13764043 13764134 -130518355 - L3b LINE CR1 -381 1202 1109 374 98 0 16 chr12 13764536 13764597 -130517892 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 1877 138 27 14 chr12 13764597 13764893 -130517596 - AluJb SINE Alu -12 300 1 395 74 0 0 chr12 13767506 13767560 -130514929 - MADE1 DNA Mariner 0 80 27 2272 112 0 0 chr12 13767560 13767855 -130514634 + AluSx SINE Alu 1 295 -17 2206 115 0 26 chr12 13767858 13768170 -130514319 + AluSx SINE Alu 1 304 -8 257 139 0 0 chr12 13768182 13768225 -130514264 - MADE1 DNA Mariner -37 43 1 2264 96 34 3 chr12 13769596 13769889 -130512600 - AluSg SINE Alu -8 302 1 2339 96 0 3 chr12 13770208 13770510 -130511979 - AluSx SINE Alu -11 301 1 223 224 69 0 chr12 13772038 13772096 -130510393 - L3 LINE CR1 -7 1570 1509 1318 275 9 15 chr12 13772469 13772800 -130509689 + MER45C DNA AcHobo 1 329 -624 1072 82 11 22 chr12 13772893 13772931 -130509558 + (TTTC)n Simple_repeat Simple_repeat 1 217 0 1072 82 11 22 chr12 13772931 13773113 -130509376 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 895 112 12 18 chr12 13773157 13773326 -130509163 + (TTTC)n Simple_repeat Simple_repeat 1 168 0 978 86 29 11 chr12 13773327 13773391 -130509098 + (TTTC)n Simple_repeat Simple_repeat 1 242 0 978 86 29 11 chr12 13773391 13773565 -130508924 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 2197 134 0 0 chr12 13773588 13773886 -130508603 - AluSx SINE Alu -14 298 1 2039 130 3 0 chr12 13774516 13774800 -130507689 + AluJb SINE Alu 1 285 -27 22 35 0 0 chr12 13774954 13774983 -130507506 + AT_rich Low_complexity Low_complexity 1 29 0 2094 112 3 17 chr12 13775476 13775788 -130506701 - AluSq SINE Alu 0 308 1 4103 102 2 3 chr12 13775873 13776454 -130506035 - L1PA14 LINE L1 -4 6157 5578 703 130 0 9 chr12 13776856 13776971 -130505518 - FRAM SINE Alu -1 175 62 29 0 0 0 chr12 13777008 13777037 -130505452 + AT_rich Low_complexity Low_complexity 1 29 0 1362 124 0 0 chr12 13777037 13777215 -130505274 + AluSg SINE Alu 1 178 -132 474 33 16 0 chr12 13777215 13777276 -130505213 + AluSc SINE Alu 228 289 -20 2054 138 7 16 chr12 13777281 13777586 -130504903 + AluSx SINE Alu 1 302 -10 663 198 33 0 chr12 13777586 13777707 -130504782 - AluJo/FLAM SINE Alu -187 125 1 1246 246 40 57 chr12 13777765 13778119 -130504370 + MLT1H1 LTR MaLR 12 359 -196 443 176 6 139 chr12 13778143 13778308 -130504181 - LTR37A LTR ERV1 -231 195 53 1726 157 50 13 chr12 13778626 13778926 -130503563 - AluJb SINE Alu -1 311 1 313 173 53 90 chr12 13779303 13779436 -130503053 - MER112 DNA MER1_type -123 137 10 2380 89 0 13 chr12 13779436 13779740 -130502749 + AluSp SINE Alu 1 300 -13 2267 125 0 0 chr12 13780023 13780335 -130502154 - AluSx SINE Alu 0 312 1 225 301 24 0 chr12 13780493 13780576 -130501913 - L2 LINE L2 -1 3312 3228 784 333 85 30 chr12 13780990 13781751 -130500738 - L2 LINE L2 0 3313 2518 1438 264 92 52 chr12 13781801 13782720 -130499769 + L2 LINE L2 2372 3312 -1 282 275 52 52 chr12 13783128 13783321 -130499168 - L2 LINE L2 -850 2464 2272 1915 127 3 37 chr12 13783793 13784092 -130498397 + AluSx SINE Alu 1 289 -23 519 258 46 55 chr12 13785642 13785859 -130496630 + MIR SINE MIR 46 260 -2 2430 88 0 7 chr12 13786217 13786522 -130495967 + AluSx SINE Alu 1 303 -9 1908 149 7 0 chr12 13787176 13787491 -130494998 - AluSx SINE Alu 0 317 1 2370 103 6 3 chr12 13788063 13788374 -130494115 + AluSx SINE Alu 1 312 0 454 232 17 122 chr12 13788573 13788811 -130493678 + MLT1L LTR MaLR 98 392 -202 274 202 96 75 chr12 13788833 13788927 -130493562 + MLT1L LTR MaLR 386 586 -29 308 333 0 0 chr12 13788956 13789043 -130493446 - L2 LINE L2 -49 3223 3137 189 0 0 0 chr12 13789043 13789064 -130493425 + (A)n Simple_repeat Simple_repeat 1 21 0 597 292 155 29 chr12 13789203 13789703 -130492786 - L2 LINE L2 -181 3132 2560 291 376 75 0 chr12 13789785 13790051 -130492438 + L2 LINE L2 2033 2318 -996 1342 245 47 71 chr12 13790080 13790570 -130491919 - MER34 LTR ERV1 -61 481 4 444 319 130 17 chr12 13790578 13790879 -130491610 + L2 LINE L2 2470 2804 -510 296 296 78 0 chr12 13790938 13791053 -130491436 + MIR SINE MIR 118 241 -21 283 225 32 5 chr12 13792666 13792790 -130489699 + MIR SINE MIR 102 230 -32 279 82 61 0 chr12 13793084 13793133 -130489356 + Alu SINE Alu 251 302 0 214 284 124 41 chr12 13793772 13793941 -130488548 + L3b LINE CR1 1230 1412 -171 525 322 35 26 chr12 13794150 13794377 -130488112 + MIR SINE MIR 34 262 0 1003 195 6 0 chr12 13794464 13794638 -130487851 + FAM SINE Alu 1 175 0 516 231 18 106 chr12 13794684 13794957 -130487532 + L2 LINE L2 3022 3270 -43 225 279 50 91 chr12 13795112 13795235 -130487254 - L2 LINE L2 -455 2859 2747 2404 92 26 0 chr12 13795235 13795538 -130486951 - AluSx SINE Alu -1 311 1 225 279 50 91 chr12 13795538 13795633 -130486856 - L2 LINE L2 -567 2747 2650 215 252 47 84 chr12 13798693 13798800 -130483689 + L2 LINE L2 3211 3313 0 872 151 0 0 chr12 13799025 13799151 -130483338 - FLAM_C SINE Alu -10 133 8 499 271 61 11 chr12 13799194 13799375 -130483114 - L2 LINE L2 -86 3227 3038 400 296 0 0 chr12 13799713 13799811 -130482678 - MIR SINE MIR -118 144 47 570 284 56 0 chr12 13799905 13800102 -130482387 - MIR SINE MIR -8 254 47 2342 208 31 81 chr12 13800832 13801576 -130480913 + L1MC5 LINE L1 6712 7418 -543 1046 168 0 12 chr12 13801677 13801850 -130480639 + FRAM SINE Alu 1 167 -9 726 230 77 55 chr12 13801860 13801905 -130480584 + L1MC5 LINE L1 7549 7592 -369 2130 103 14 7 chr12 13801905 13802196 -130480293 + AluSg SINE Alu 1 293 -17 726 230 77 55 chr12 13802196 13802529 -130479960 + L1MC5 LINE L1 7592 7935 -26 286 274 53 11 chr12 13802816 13802911 -130479578 - MIR SINE MIR -111 151 53 539 167 149 0 chr12 13802990 13803104 -130479385 - MER96 DNA MER1_type? -33 142 12 326 201 77 0 chr12 13804542 13804614 -130477875 + L1ME LINE L1 5527 5595 -526 408 40 0 0 chr12 13804620 13804670 -130477819 + (TC)n Simple_repeat Simple_repeat 1 50 0 1935 136 10 27 chr12 13804670 13804971 -130477518 - AluSx SINE Alu -16 296 1 465 90 0 0 chr12 13805463 13805530 -130476959 - MER41A LTR ERV1 -93 461 395 705 168 87 34 chr12 13806656 13806864 -130475625 + HAL1 LINE L1 974 1192 -1315 1344 197 44 47 chr12 13806952 13807152 -130475337 + MER2 DNA MER2_type 7 206 -139 381 22 0 0 chr12 13807152 13807198 -130475291 + (CA)n Simple_repeat Simple_repeat 1 46 0 1518 158 34 50 chr12 13807202 13807500 -130474989 - AluJo SINE Alu -8 304 12 3304 166 15 75 chr12 13807503 13808238 -130474251 + LTR8 LTR ERV1 1 691 0 1344 197 44 47 chr12 13808238 13808368 -130474121 + MER2 DNA MER2_type 211 345 0 231 299 87 39 chr12 13808687 13808814 -130473675 + MER112 DNA MER1_type 23 155 -105 2091 138 0 0 chr12 13809243 13809539 -130472950 - AluSx SINE Alu -16 296 1 345 373 56 0 chr12 13809869 13810030 -130472459 - MIR3 SINE MIR -8 200 31 264 194 32 0 chr12 13810095 13810157 -130472332 + CT-rich Low_complexity Low_complexity 2 65 0 345 140 0 0 chr12 13810160 13810217 -130472272 + (TCCC)n Simple_repeat Simple_repeat 3 59 0 1361 172 18 72 chr12 13810217 13810496 -130471993 - AluJb SINE Alu -14 298 35 239 143 0 0 chr12 13810504 13810522 -130471967 - Alu SINE Alu 0 133 116 294 29 0 0 chr12 13810522 13810557 -130471932 + (TC)n Simple_repeat Simple_repeat 1 35 0 239 143 0 0 chr12 13810557 13810587 -130471902 - Alu SINE Alu -16 117 85 252 306 0 0 chr12 13810771 13810833 -130471656 - L2 LINE L2 -1 3271 3210 237 263 25 12 chr12 13811717 13811797 -130470692 - MIR3 SINE MIR -6 202 122 * 311 324 29 0 chr12 13811795 13811931 -130470558 - L2 LINE L2 -1010 2304 2165 536 304 146 27 chr12 13812076 13812445 -130470044 + L2 LINE L2 2888 3300 -13 674 301 41 0 chr12 13813107 13813326 -130469163 - MIR SINE MIR -1 261 34 235 215 15 46 chr12 13813740 13813805 -130468684 - MIR SINE MIR -109 153 91 214 289 149 0 chr12 13813883 13814004 -130468485 - MIR SINE MIR -66 196 58 812 260 151 43 chr12 13814294 13814759 -130467730 - LTR33A LTR ERVL 0 523 9 630 236 109 26 chr12 13815126 13815355 -130467134 + L2 LINE L2 3058 3305 -8 553 231 95 107 chr12 13815356 13815599 -130466890 + MER102a DNA MER1_type 91 330 0 2413 164 87 8 chr12 13816179 13816660 -130465829 - MER44D DNA MER2_type 0 605 32 278 211 68 27 chr12 13817189 13817336 -130465153 + (CGG)n Simple_repeat Simple_repeat 2 154 0 273 172 31 115 chr12 13817271 13817463 -130465026 + (CGGGG)n Simple_repeat Simple_repeat 2 177 0 * 2179 121 0 13 chr12 13820938 13821245 -130461244 - AluSx SINE Alu -9 303 1 299 278 52 19 chr12 13821836 13821968 -130460521 - MIR SINE MIR -70 138 5 1776 163 42 0 chr12 13822168 13822456 -130460033 - AluJb SINE Alu -12 300 1 1499 176 31 10 chr12 13822458 13822747 -130459742 - AluJo SINE Alu -17 295 1 728 200 47 24 chr12 13823052 13823222 -130459267 - MER104 DNA Tc2 -1 179 6 267 229 46 120 chr12 13823513 13823591 -130458898 + MIR SINE MIR 50 109 -153 907 118 0 22 chr12 13823591 13823727 -130458762 - FLAM_C SINE Alu 0 133 1 267 229 46 120 chr12 13823727 13823823 -130458666 + MIR SINE MIR 109 211 -51 2056 84 45 74 chr12 13823958 13824269 -130458220 - AluSx SINE Alu -10 302 1 1943 106 48 7 chr12 13824364 13824657 -130457832 + MER4D LTR ERV1 1 305 -598 2186 128 0 10 chr12 13824660 13824973 -130457516 + AluSx SINE Alu 2 311 -1 2362 91 3 3 chr12 13825499 13825807 -130456682 - AluSg SINE Alu -2 308 1 4605 139 29 85 chr12 13825841 13826869 -130455620 - L1MA6 LINE L1 0 6300 5216 2308 101 3 0 chr12 13826869 13827166 -130455323 - AluSx SINE Alu -14 298 1 2116 125 10 13 chr12 13827176 13827489 -130455000 - AluSx SINE Alu 0 312 1 4605 139 29 85 chr12 13827489 13827703 -130454786 - L1MA6 LINE L1 -1093 5207 5108 28 29 0 0 chr12 13827957 13827992 -130454497 + AT_rich Low_complexity Low_complexity 1 35 0 846 271 156 19 chr12 13828006 13828416 -130454073 - L2 LINE L2 -4 3309 2844 * 962 206 78 0 chr12 13828407 13828625 -130453864 + MIR SINE MIR 16 250 -12 1210 238 55 46 chr12 13828625 13829041 -130453448 + L1MC4 LINE L1 7480 7899 -143 760 309 148 25 chr12 13829071 13829504 -130452985 + L2 LINE L2 2825 3310 -3 201 152 0 0 chr12 13829504 13829537 -130452952 + (GGATG)n Simple_repeat Simple_repeat 3 35 0 1782 126 87 4 chr12 13829823 13830100 -130452389 - AluSq SINE Alu -13 300 1 234 228 208 17 chr12 13830391 13830524 -130451965 + MER5A DNA MER1_type 1 141 -37 2134 123 10 3 chr12 13830651 13830952 -130451537 - AluSx SINE Alu -9 303 1 968 289 59 30 chr12 13830971 13831411 -130451078 - L1MC4a LINE L1 -1799 6289 5837 * 2044 245 66 0 chr12 13831408 13832012 -130450477 - L1MC4a LINE L1 -2591 3835 3192 23 0 0 0 chr12 13832241 13832264 -130450225 + AT_rich Low_complexity Low_complexity 1 23 0 2336 90 0 10 chr12 13832315 13832616 -130449873 - AluSx SINE Alu -14 298 1 2265 210 120 39 chr12 13832700 13833428 -130449061 - L1MCa LINE L1 -3215 3211 2375 1904 148 3 32 chr12 13833428 13833738 -130448751 - AluJb SINE Alu -11 301 1 2265 210 120 39 chr12 13833738 13834002 -130448487 - L1MCa LINE L1 -4051 2375 2134 355 306 91 19 chr12 13834163 13834372 -130448117 - L1M4 LINE L1 -3668 2478 2255 2118 153 79 29 chr12 13834994 13835438 -130447051 - MLT1C LTR MaLR -1 466 1 331 329 82 14 chr12 13835528 13835674 -130446815 - HAL1b LINE L1 -437 911 756 2319 112 0 0 chr12 13836026 13836331 -130446158 - AluSx SINE Alu -7 305 1 2323 229 66 22 chr12 13837004 13837550 -130444939 + MLT1G LTR MaLR 19 588 -2 756 310 49 4 chr12 13837632 13837877 -130444612 + MLT2F LTR ERVL 6 261 -402 2424 53 0 0 chr12 13837959 13838288 -130444201 + AluY SINE Alu 1 311 0 253 206 44 29 chr12 13838656 13838724 -130443765 + MLT2F LTR ERVL 275 343 -320 1723 320 55 14 chr12 13839049 13839793 -130442696 - HERV16 LTR ERVL -2625 2371 1658 368 406 0 0 chr12 13839791 13839951 -130442538 - HERV16 LTR ERVL -3464 1532 1373 * 1998 132 42 73 chr12 13840303 13840729 -130441760 - L1MA8 LINE L1 -91 6200 5788 551 305 79 32 chr12 13840752 13841067 -130441422 - LTR16C LTR ERVL -4 487 158 781 241 105 96 chr12 13841084 13841604 -130440885 - L1MC5 LINE L1 -817 6991 6477 1930 131 144 25 chr12 13841604 13841964 -130440525 - MER57A LTR ERV1 0 403 1 781 241 105 96 chr12 13841964 13842456 -130440033 - L1MC5 LINE L1 -1331 6477 5985 905 213 0 18 chr12 13842456 13842625 -130439864 - FRAM SINE Alu 0 166 1 781 241 105 96 chr12 13842625 13842833 -130439656 - L1MC5 LINE L1 -1823 5985 5780 794 254 24 10 chr12 13842887 13843092 -130439397 - L2 LINE L2 -879 2435 2228 234 226 0 0 chr12 13844292 13844345 -130438144 - L1ME4a LINE L1 -100 6021 5969 26 0 0 0 chr12 13844525 13844551 -130437938 + AT_rich Low_complexity Low_complexity 1 26 0 696 169 32 0 chr12 13844593 13844769 -130437720 + AluJb SINE Alu 156 335 0 22 35 0 0 chr12 13844786 13844815 -130437674 + AT_rich Low_complexity Low_complexity 1 29 0 1148 176 14 32 chr12 13845617 13845833 -130436656 - AluJo SINE Alu -15 297 86 207 347 0 10 chr12 13845896 13845994 -130436495 + L3 LINE CR1 1251 1347 -230 210 259 0 0 chr12 13846114 13846172 -130436317 + L3b LINE CR1 1526 1583 0 2276 266 79 71 chr12 13848679 13849627 -130432862 + L2 LINE L2 1927 2904 -409 2078 132 0 25 chr12 13849627 13849946 -130432543 + AluSq SINE Alu 1 311 -2 2276 266 79 71 chr12 13849946 13850358 -130432131 + L2 LINE L2 2904 3311 -2 1867 134 39 23 chr12 13850358 13850664 -130431825 - AluSx SINE Alu -1 311 1 1085 163 0 11 chr12 13851414 13851592 -130430897 + AluJb SINE Alu 137 312 0 2443 95 0 0 chr12 13851772 13852078 -130430411 + AluY SINE Alu 1 306 -5 2153 139 3 0 chr12 13852207 13852517 -130429972 - AluSx SINE Alu -1 311 1 1724 152 42 7 chr12 13852519 13852802 -130429687 - AluJo SINE Alu -11 301 9 253 258 0 0 chr12 13853295 13853357 -130429132 + L2 LINE L2 2628 2689 -625 2291 101 13 3 chr12 13853489 13853795 -130428694 - AluSx SINE Alu -3 309 1 272 324 76 38 chr12 13853844 13854106 -130428383 + L2 LINE L2 2982 3253 -60 2144 103 4 0 chr12 13854221 13854522 -130427967 - AluSq SINE Alu 0 302 1 1756 166 3 7 chr12 13854816 13855127 -130427362 + AluJb SINE Alu 1 310 0 500 292 65 0 chr12 13855820 13856005 -130426484 + MER117 DNA MER1_type 1 197 0 21 0 0 0 chr12 13856308 13856329 -130426160 + GC_rich Low_complexity Low_complexity 1 21 0 685 247 93 14 chr12 13857386 13857765 -130424724 + MLT1J2 LTR MaLR 1 441 -9 192 40 0 0 chr12 13859006 13859031 -130423458 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 764 224 0 7 chr12 13859031 13859178 -130423311 - FRAM SINE Alu -19 147 2 795 231 32 42 chr12 13859743 13859959 -130422530 - MIR SINE MIR -28 234 21 330 293 19 19 chr12 13860112 13860218 -130422271 + MIR3 SINE MIR 85 190 -18 458 330 87 0 chr12 13860937 13861143 -130421346 - MIR SINE MIR -15 247 24 244 237 35 0 chr12 13861185 13861267 -130421222 - MIR SINE MIR -60 148 95 279 275 47 47 chr12 13861964 13862113 -130420376 - MIR3 SINE MIR -59 149 1 183 80 0 0 chr12 13862246 13862271 -130420218 + (T)n Simple_repeat Simple_repeat 1 25 0 825 0 0 0 chr12 13863187 13863277 -130419212 + 5S rRNA rRNA 1 90 -31 2276 79 7 0 chr12 13863474 13863794 -130418695 - AluSp SINE Alu 0 322 1 275 202 180 10 chr12 13863838 13863939 -130418550 + MIR SINE MIR 12 144 -64 206 92 46 46 chr12 13864476 13864541 -130417948 + (TATAG)n Simple_repeat Simple_repeat 2 66 0 731 242 47 94 chr12 13865165 13865652 -130416837 - HAL1b LINE L1 -796 552 89 492 228 53 92 chr12 13865693 13865760 -130416729 + MIR SINE MIR 24 92 -170 2215 128 36 28 chr12 13865760 13866120 -130416369 - THE1B LTR MaLR 0 364 2 492 228 53 92 chr12 13866120 13866224 -130416265 + MIR SINE MIR 92 188 -74 2073 134 0 0 chr12 13866224 13866515 -130415974 - AluSx SINE Alu -21 291 1 492 228 53 92 chr12 13866515 13866548 -130415941 + MIR SINE MIR 188 221 -41 532 139 0 12 chr12 13867155 13867241 -130415248 + LTR41 LTR ERVL 3 87 -686 358 223 0 58 chr12 13867287 13867408 -130415081 + LTR41 LTR ERVL 655 768 -5 798 223 92 26 chr12 13867616 13867757 -130414732 + MIR SINE MIR 3 166 -96 189 0 0 0 chr12 13867757 13867778 -130414711 + (TAA)n Simple_repeat Simple_repeat 3 23 0 798 223 92 26 chr12 13867778 13867865 -130414624 + MIR SINE MIR 166 246 -16 760 311 109 20 chr12 13868425 13868827 -130413662 + L3 LINE CR1 789 1226 -351 497 325 66 4 chr12 13868881 13869124 -130413365 - MIR SINE MIR 0 262 5 181 265 0 0 chr12 13869132 13869181 -130413308 + L3 LINE CR1 1239 1287 -290 21 0 0 0 chr12 13869458 13869479 -130413010 + AT_rich Low_complexity Low_complexity 1 21 0 2150 151 52 0 chr12 13869481 13869865 -130412624 - L1MB2 LINE L1 -2 6169 5766 22 56 0 0 chr12 13870316 13870352 -130412137 + AT_rich Low_complexity Low_complexity 1 36 0 4796 158 65 46 chr12 13870401 13871452 -130411037 - MER11C LTR ERVK 0 1071 1 23 0 0 0 chr12 13873391 13873414 -130409075 + AT_rich Low_complexity Low_complexity 1 23 0 1167 246 11 71 chr12 13873953 13874014 -130408475 - L1ME3A LINE L1 -218 5952 5889 2130 130 0 0 chr12 13874014 13874313 -130408176 - AluSx SINE Alu -13 299 1 1167 246 11 71 chr12 13874313 13874703 -130407786 - L1ME3A LINE L1 -281 5889 5528 2619 198 101 30 chr12 13874745 13875411 -130407078 - L1MDa LINE L1 -5826 714 2 185 197 203 6 chr12 13875769 13875862 -130406627 - MIR SINE MIR -9 199 83 882 258 131 36 chr12 13876020 13876493 -130405996 + LTR33 LTR ERVL 4 521 0 802 264 40 12 chr12 13877021 13877271 -130405218 - MIR SINE MIR -4 258 2 479 321 47 11 chr12 13880227 13880417 -130402072 + MIR SINE MIR 28 224 -38 1515 314 187 8 chr12 13881986 13882943 -130399546 - L3 LINE CR1 -21 1556 429 1154 246 5 0 chr12 13883004 13883224 -130399265 + MER58A DNA MER1_type 3 223 -1 23 0 0 0 chr12 13884732 13884755 -130397734 + AT_rich Low_complexity Low_complexity 1 23 0 193 325 0 24 chr12 13886461 13886544 -130395945 - L2 LINE L2 -8 3264 3184 542 272 52 26 chr12 13886997 13887188 -130395301 + MIR SINE MIR 1 196 -66 351 0 0 0 chr12 13887208 13887247 -130395242 + (TA)n Simple_repeat Simple_repeat 2 40 0 222 202 71 36 chr12 13887956 13888040 -130394449 + MIR3 SINE MIR 97 183 -25 190 219 0 94 chr12 13889073 13889137 -130393352 - L2 LINE L2 -12 3260 3203 217 343 0 0 chr12 13889338 13889408 -130393081 + MIR SINE MIR 45 114 -94 3195 90 26 2 chr12 13889426 13889485 -130393004 - HSMAR2 DNA Mariner -1 1301 1245 2297 113 0 0 chr12 13889485 13889786 -130392703 + AluSg SINE Alu 1 301 -9 3195 90 26 2 chr12 13889786 13890182 -130392307 - HSMAR2 DNA Mariner -57 1245 835 785 157 0 8 chr12 13890196 13890330 -130392159 - FLAM_C SINE Alu 0 133 1 5356 128 7 8 chr12 13890453 13891274 -130391215 - HSMAR2 DNA Mariner -481 821 2 2107 106 6 61 chr12 13892461 13892791 -130389698 - AluSx SINE Alu 0 312 1 341 221 78 0 chr12 13893451 13893528 -130388961 - L2 LINE L2 -3 3269 3187 275 198 116 0 chr12 13893655 13893741 -130388748 - L1ME4a LINE L1 -37 6084 5989 22 35 0 0 chr12 13894279 13894308 -130388181 + AT_rich Low_complexity Low_complexity 1 29 0 7882 18 0 0 chr12 13894308 13895454 -130387035 - L1PA3 LINE L1 -3 6152 5005 8356 29 0 0 chr12 13895454 13896416 -130386073 + L1PA3 LINE L1 4020 4981 -1165 479 310 30 35 chr12 13897225 13897422 -130385067 + MER20 DNA MER1_type 1 196 -23 2369 76 0 19 chr12 13898985 13899300 -130383189 - AluSq SINE Alu -4 309 1 4577 52 16 0 chr12 13900579 13901140 -130381349 - L1PA5 LINE L1 0 6154 5585 220 215 0 77 chr12 13901385 13901450 -130381039 - L2 LINE L2 -8 3264 3205 207 347 71 10 chr12 13901602 13901700 -130380789 + L2 LINE L2 3149 3252 -20 329 318 66 71 chr12 13906698 13906804 -130375685 - MIR3 SINE MIR -6 202 96 2220 95 7 0 chr12 13906804 13907100 -130375389 + AluSp SINE Alu 1 298 -15 329 318 66 71 chr12 13907100 13907191 -130375298 - MIR3 SINE MIR -112 96 6 3819 123 51 47 chr12 13908059 13908454 -130374035 + MER39B LTR ERV1 6 407 -246 1670 154 20 20 chr12 13908454 13908747 -130373742 + AluJo SINE Alu 1 293 -19 3819 123 51 47 chr12 13908747 13908996 -130373493 + MER39B LTR ERV1 407 653 0 238 313 61 61 chr12 13909614 13909761 -130372728 + L2 LINE L2 3122 3268 -4 2348 77 0 16 chr12 13909819 13910132 -130372357 - AluSq SINE Alu -5 308 1 34 42 0 0 chr12 13910157 13910205 -130372284 + AT_rich Low_complexity Low_complexity 1 48 0 202 267 0 0 chr12 13912734 13912779 -130369710 + C-rich Low_complexity Low_complexity 6 50 0 2368 72 0 3 chr12 13913228 13913532 -130368957 + AluY SINE Alu 2 304 -7 2020 115 3 10 chr12 13913841 13914137 -130368352 + AluSx SINE Alu 1 294 -18 274 328 47 26 chr12 13914180 13914372 -130368117 + L2 LINE L2 2887 3082 -190 1047 87 0 0 chr12 13914406 13914544 -130367945 - FLAM_C SINE Alu -5 138 1 311 265 59 52 chr12 13914630 13914766 -130367723 - MER5B DNA MER1_type 0 178 42 356 332 119 5 chr12 13914888 13915081 -130367408 - L3 LINE CR1 -693 884 670 23 0 0 0 chr12 13915340 13915363 -130367126 + AT_rich Low_complexity Low_complexity 1 23 0 1351 227 111 32 chr12 13915799 13916231 -130366258 + LTR33 LTR ERVL 1 466 -55 1264 262 30 41 chr12 13917500 13917867 -130364622 + MLT1J LTR MaLR 147 509 -2 25 95 0 0 chr12 13918714 13918788 -130363701 + GC_rich Low_complexity Low_complexity 1 74 0 810 274 80 94 chr12 13918994 13919778 -130362711 + HAL1 LINE L1 1093 1865 -642 386 276 39 8 chr12 13919839 13919966 -130362523 - MIR SINE MIR -131 131 1 374 242 30 104 chr12 13920043 13920312 -130362177 + HAL1 LINE L1 2247 2495 -12 292 318 81 47 chr12 13920481 13920739 -130361750 - L2 LINE L2 -432 2882 2616 246 303 41 49 chr12 13921002 13921124 -130361365 + L2 LINE L2 3146 3266 -6 2306 72 10 0 chr12 13921271 13921564 -130360925 - AluSx SINE Alu -16 296 1 547 276 91 49 chr12 13923202 13923466 -130359023 - L3 LINE CR1 -7 1570 1296 237 132 0 0 chr12 13923580 13923618 -130358871 + (TTC)n Simple_repeat Simple_repeat 2 39 0 206 346 67 19 chr12 13923809 13924057 -130358432 + L2 LINE L2 2703 2970 -302 1786 127 53 14 chr12 13924217 13924500 -130357989 - AluSx SINE Alu -18 294 1 3596 145 44 0 chr12 13924648 13925267 -130357222 - L1MC1 LINE L1 -5 6328 5683 344 351 48 34 chr12 13925401 13925609 -130356880 + HAL1 LINE L1 1447 1657 -850 358 309 114 29 chr12 13926128 13926478 -130356011 + L1ME LINE L1 5256 5635 -486 332 326 57 17 chr12 13927862 13928037 -130354452 - MIR SINE MIR -34 228 47 244 261 29 14 chr12 13928386 13928455 -130354034 - L2 LINE L2 -239 3074 3005 275 222 181 0 chr12 13930070 13930142 -130352347 - MIR SINE MIR -14 248 164 40 73 0 0 chr12 13931676 13931758 -130350731 + GC_rich Low_complexity Low_complexity 1 82 0 67 103 0 0 chr12 13931774 13932016 -130350473 + GC_rich Low_complexity Low_complexity 1 242 0 259 202 71 36 chr12 13932940 13933024 -130349465 - MIR3 SINE MIR -25 183 97 180 401 15 15 chr12 13933948 13934080 -130348409 + MIR3 SINE MIR 10 141 -67 2093 117 0 7 chr12 13934416 13934723 -130347766 + AluSx SINE Alu 1 305 -7 343 195 253 78 chr12 13935148 13935302 -130347187 + MIR SINE MIR 82 262 0 1931 153 0 0 chr12 13936437 13936732 -130345757 + AluSx SINE Alu 1 295 -17 225 224 0 17 chr12 13936732 13936781 -130345708 + (TA)n Simple_repeat Simple_repeat 2 51 -7 216 0 0 0 chr12 13936781 13936805 -130345684 + (CA)n Simple_repeat Simple_repeat 2 25 0 225 224 0 17 chr12 13936805 13936813 -130345676 + (TA)n Simple_repeat Simple_repeat 51 58 0 237 222 0 0 chr12 13938202 13938265 -130344224 + (TG)n Simple_repeat Simple_repeat 2 64 0 225 0 0 0 chr12 13939149 13939174 -130343315 + (TG)n Simple_repeat Simple_repeat 2 26 0 1062 99 0 0 chr12 13939530 13939672 -130342817 - AluSq/x SINE Alu -170 142 1 3887 195 32 15 chr12 13939672 13940558 -130341931 - L1 LINE L1 -1830 4316 3416 1966 227 60 69 chr12 13940550 13941202 -130341287 + L1MC4 LINE L1 6412 7057 -985 * 8002 60 2 8 chr12 13941314 13942323 -130340166 + MER11C LTR ERVK 69 1071 0 1868 167 53 12 chr12 13943206 13943548 -130338941 + MLT1A1 LTR MaLR 10 365 0 698 237 40 0 chr12 13944175 13944348 -130338141 + LTR40b LTR ERVL 1 180 -282 428 248 31 8 chr12 13944358 13944487 -130338002 + FLAM_C SINE Alu 2 133 0 789 36 20 52 chr12 13948130 13948332 -130334157 + (TAGA)n Simple_repeat Simple_repeat 1 195 0 229 262 78 48 chr12 13948421 13948524 -130333965 + MIR3 SINE MIR 10 115 -93 242 274 11 63 chr12 13948824 13948919 -130333570 - MIR SINE MIR 0 262 173 230 352 0 23 chr12 13949103 13949191 -130333298 + GA-rich Low_complexity Low_complexity 5 90 0 262 289 48 46 chr12 13949813 13949998 -130332491 + MIR SINE MIR 8 192 -64 376 252 107 19 chr12 13951481 13951584 -130330905 - L2 LINE L2 -3 3269 3158 282 209 116 0 chr12 13951684 13951770 -130330719 - L1ME4a LINE L1 -37 6084 5989 22 35 0 0 chr12 13952308 13952337 -130330152 + AT_rich Low_complexity Low_complexity 1 29 0 706 231 14 21 chr12 13952337 13952568 -130329921 - L1PA3 LINE L1 -3 6152 5924 286 269 141 0 chr12 13953195 13953273 -130329216 - MIR3 SINE MIR -11 197 109 189 0 0 0 chr12 13953788 13953809 -130328680 + (A)n Simple_repeat Simple_repeat 1 21 0 245 338 20 47 chr12 13955421 13955569 -130326920 - MIR SINE MIR -62 200 57 351 253 56 39 chr12 13956665 13956843 -130325646 + AluJo SINE Alu 27 207 -95 819 239 41 0 chr12 13958139 13958336 -130324153 - MER58A DNA MER1_type -1 223 19 249 336 136 20 chr12 13958628 13958923 -130323566 + L3b LINE CR1 1109 1437 -146 792 166 0 14 chr12 13959410 13959555 -130322934 + (TTAG)n Simple_repeat Simple_repeat 3 145 0 21 57 0 0 chr12 13959856 13959891 -130322598 + GC_rich Low_complexity Low_complexity 1 35 0 1373 73 6 0 chr12 13960068 13960245 -130322244 - AluSp SINE Alu -118 195 18 286 247 27 0 chr12 13961874 13961947 -130320542 + MER94 DNA DNA 4 78 -56 616 291 138 19 chr12 13961985 13962304 -130320185 - L3 LINE CR1 -156 1421 1065 228 284 29 39 chr12 13962584 13962686 -130319803 + MIR SINE MIR 35 135 -127 1839 134 0 0 chr12 13964494 13964769 -130317720 - AluSx SINE Alu -37 275 1 991 242 35 102 chr12 13964769 13965199 -130317290 - L1ME3A LINE L1 -284 5894 5494 418 187 9 75 chr12 13965200 13965307 -130317182 - L1MDa LINE L1 -5826 714 615 22 99 0 0 chr12 13965690 13965761 -130316728 + GC_rich Low_complexity Low_complexity 1 71 0 518 108 0 32 chr12 13966361 13966454 -130316035 + L1PA5 LINE L1 6065 6154 0 537 321 15 11 chr12 13966462 13966730 -130315759 + L1MC/D LINE L1 4762 5030 -1116 1607 153 7 35 chr12 13966741 13967028 -130315461 + AluJb SINE Alu 26 304 -8 568 277 77 18 chr12 13967053 13967327 -130315162 + L1MC/D LINE L1 5365 5654 -2154 454 313 100 60 chr12 13967962 13968243 -130314246 - L2 LINE L2 -2 3270 2979 230 300 0 56 chr12 13968568 13968658 -130313831 + MIR3 SINE MIR 97 181 -27 811 165 0 8 chr12 13969599 13969756 -130312733 + FLAM_C SINE Alu 2 157 0 945 232 84 21 chr12 13971316 13971611 -130310878 + MLT1F LTR MaLR 5 388 -154 710 181 36 31 chr12 13971612 13971805 -130310684 - L1MB8 LINE L1 -19 6159 5966 229 271 76 0 chr12 13971800 13971918 -130310571 - L1M4 LINE L1 -1563 4583 4457 * 195 330 148 11 chr12 13972810 13972898 -130309591 + L2 LINE L2 3163 3262 -10 455 229 101 53 chr12 13973086 13973274 -130309215 + MLT1D LTR MaLR 1 197 -308 36 53 0 0 chr12 13973291 13973348 -130309141 + GC_rich Low_complexity Low_complexity 1 57 0 430 273 45 8 chr12 13974310 13974442 -130308047 + MIR SINE MIR 118 254 -8 219 169 52 104 chr12 13975108 13975262 -130307227 + (CATCC)n Simple_repeat Simple_repeat 1 146 0 246 327 180 40 chr12 13975281 13975553 -130306936 + L2 LINE L2 2478 2787 -527 375 232 21 32 chr12 13975619 13975714 -130306775 + MLT1J LTR MaLR 147 240 -271 292 311 111 0 chr12 13977461 13977596 -130304893 - MIR SINE MIR -15 247 98 576 165 85 160 chr12 13985635 13985823 -130296666 - MLT2D LTR ERVL 0 414 241 194 283 101 40 chr12 13986634 13986733 -130295756 - L2 LINE L2 -34 3279 3175 1709 112 8 0 chr12 13987193 13987443 -130295046 - MSTA-int LTR MaLR -1326 254 3 524 128 0 0 chr12 13987445 13987523 -130294966 - MSTA LTR MaLR 0 428 351 2115 133 47 8 chr12 13988136 13988497 -130293992 - THE1C LTR MaLR 0 375 1 1707 121 45 28 chr12 13989196 13989485 -130293004 - AluSx SINE Alu -18 294 1 1415 288 90 42 chr12 13989705 13990340 -130292149 - MER115 DNA AcHobo -22 671 7 203 307 21 57 chr12 13990351 13990491 -130291998 + L2 LINE L2 1814 1948 -1366 430 367 92 20 chr12 13990656 13991057 -130291432 + L2 LINE L2 2351 2780 -534 351 302 75 19 chr12 13991354 13991460 -130291029 + L2 LINE L2 3139 3250 -22 261 220 11 99 chr12 13991739 13991830 -130290659 + MER115 DNA AcHobo 2 84 -609 385 344 100 33 chr12 13991921 13992442 -130290047 - L2 LINE L2 -449 2865 2310 228 314 91 58 chr12 13993145 13993266 -130289223 + L3 LINE CR1 967 1091 -486 1278 225 0 29 chr12 13994624 13994931 -130287558 - AluJo SINE Alu -13 299 2 209 271 51 0 chr12 13996508 13996567 -130285922 - L2 LINE L2 -562 2752 2691 185 253 81 46 chr12 13997786 13997873 -130284616 + MIR3 SINE MIR 112 201 -7 185 276 0 52 chr12 13998490 13998548 -130283941 + L2 LINE L2 3258 3312 -1 226 315 54 33 chr12 13998619 13998711 -130283778 - L3 LINE CR1 -174 1403 1310 1621 282 111 26 chr12 14000241 14001111 -130281378 + L2 LINE L2 2208 3152 -161 397 204 50 62 chr12 14001121 14001303 -130281186 - MLT1H LTR MaLR -11 614 439 685 288 132 3 chr12 14001541 14001829 -130280660 + L2 LINE L2 2986 3310 -3 23 33 0 0 chr12 14002419 14002449 -130280040 + AT_rich Low_complexity Low_complexity 1 30 0 196 337 32 0 chr12 14002533 14002638 -130279851 - MIR SINE MIR -69 139 41 273 253 44 22 chr12 14003846 14003937 -130278552 - MER117 DNA MER1_type -60 137 45 662 114 9 19 chr12 14006482 14006587 -130275902 - FLAM_A SINE Alu -9 133 30 3119 158 53 23 chr12 14006604 14007180 -130275309 - MER6A DNA MER2_type -19 586 -4 599 75 37 9 chr12 14008465 14008572 -130273917 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 842 139 0 8 chr12 14009158 14009280 -130273209 + AluJb SINE Alu 5 125 -187 634 220 38 13 chr12 14009426 14009585 -130272904 - MIR SINE MIR -23 239 77 262 269 103 32 chr12 14009704 14009860 -130272629 + MIR SINE MIR 29 195 -67 2241 200 82 21 chr12 14009902 14010102 -130272387 + MLT1F LTR MaLR 1 187 -355 2725 90 0 0 chr12 14010102 14010457 -130272032 + THE1A LTR MaLR 1 355 0 2241 200 82 21 chr12 14010457 14010767 -130271722 + MLT1F LTR MaLR 187 542 0 199 314 42 8 chr12 14011167 14011285 -130271204 + L2 LINE L2 2771 2892 -422 311 0 0 25 chr12 14011289 14011329 -130271160 + (TCCCC)n Simple_repeat Simple_repeat 3 41 0 425 318 17 12 chr12 14011393 14011730 -130270759 + CT-rich Low_complexity Low_complexity 1 338 0 254 319 14 21 chr12 14012724 14012868 -130269621 + CT-rich Low_complexity Low_complexity 1 143 0 1933 154 3 3 chr12 14013865 14014170 -130268319 + AluJb SINE Alu 1 305 -7 253 338 38 56 chr12 14015837 14016103 -130266386 - L2 LINE L2 -337 2977 2717 405 313 70 57 chr12 14016811 14017194 -130265295 - L2 LINE L2 -50 3263 2873 1893 171 0 0 chr12 14017194 14017492 -130264997 + AluJo SINE Alu 1 298 -14 405 313 70 57 chr12 14017492 14017511 -130264978 - L2 LINE L2 -440 2873 2856 245 234 0 0 chr12 14017520 14017584 -130264905 + C-rich Low_complexity Low_complexity 1 64 0 196 329 0 21 chr12 14017721 14017861 -130264628 + C-rich Low_complexity Low_complexity 2 138 0 223 241 0 17 chr12 14017887 14017945 -130264544 + C-rich Low_complexity Low_complexity 4 60 0 26 30 0 0 chr12 14018572 14018605 -130263884 + AT_rich Low_complexity Low_complexity 1 33 0 775 304 77 19 chr12 14018696 14019127 -130263362 - L1MC4a LINE L1 -1723 6085 5630 2732 154 59 62 chr12 14019503 14020013 -130262476 + MER61D LTR ERV1 1 793 -1 185 324 14 14 chr12 14020203 14020274 -130262215 + MIR SINE MIR 23 93 -115 646 116 11 5 chr12 14020754 14020943 -130261546 + AluSg1 SINE Alu 16 296 -14 800 273 181 3 chr12 14021010 14021380 -130261109 - LTR33A LTR ERVL 0 523 88 349 300 6 69 chr12 14021943 14022103 -130260386 - MIR3 SINE MIR -6 202 53 292 236 28 28 chr12 14022741 14022847 -130259642 + GA-rich Low_complexity Low_complexity 3 108 0 1704 162 3 43 chr12 14023363 14023666 -130258823 + AluJb SINE Alu 22 312 0 2278 113 0 0 chr12 14023879 14024188 -130258301 - AluY SINE Alu -2 309 1 1622 192 19 33 chr12 14024766 14025125 -130257364 + MLT1A1 LTR MaLR 10 363 -2 237 234 0 0 chr12 14025506 14025570 -130256919 + GA-rich Low_complexity Low_complexity 2 65 0 511 138 0 0 chr12 14027463 14027543 -130254946 + MER116 DNA Mariner 1 80 0 265 331 115 13 chr12 14027550 14027707 -130254782 + MIR SINE MIR 20 192 -70 298 312 34 56 chr12 14027771 14027950 -130254539 - MIR SINE MIR -60 202 29 261 83 0 0 chr12 14027955 14027991 -130254498 + (T)n Simple_repeat Simple_repeat 1 36 0 2144 121 3 3 chr12 14028162 14028469 -130254020 - AluSx SINE Alu -5 307 1 210 292 198 0 chr12 14028830 14028926 -130253563 + MIR SINE MIR 28 142 -66 1571 174 3 81 chr12 14030738 14030871 -130251618 + AluJo SINE Alu 1 143 -169 7284 39 2 5 chr12 14030871 14031751 -130250738 + L1PA5 LINE L1 5277 6154 0 1571 174 3 81 chr12 14031751 14031938 -130250551 + AluJo SINE Alu 143 296 -16 221 264 82 64 chr12 14032553 14032663 -130249826 + L2 LINE L2 3167 3278 -35 727 268 59 107 chr12 14032789 14033330 -130249159 + MLT1K LTR MaLR 66 580 -8 908 237 139 8 chr12 14033630 14034136 -130248353 + L1ME3A LINE L1 5023 5581 -581 511 195 41 0 chr12 14034167 14034290 -130248199 + L1ME3A LINE L1 6030 6157 -13 332 175 0 0 chr12 14034441 14034498 -130247991 + LTR67 LTR ERVL 501 557 0 687 276 87 5 chr12 14034706 14034902 -130247587 + MIR SINE MIR 7 218 -44 6375 88 31 0 chr12 14035054 14036254 -130246235 - L1PB1 LINE L1 -1 6150 4932 265 366 69 17 chr12 14037427 14037602 -130244887 + MIR3 SINE MIR 8 191 -17 454 322 105 45 chr12 14038158 14038677 -130243812 - L2 LINE L2 -4 3268 2730 215 244 67 0 chr12 14039416 14039506 -130242983 + (CATA)n Simple_repeat Simple_repeat 4 99 0 366 123 0 0 chr12 14039552 14039609 -130242880 + (CA)n Simple_repeat Simple_repeat 2 58 0 2216 178 2 65 chr12 14039652 14040146 -130242343 + MLT1D LTR MaLR 43 505 0 540 299 34 20 chr12 14040215 14040419 -130242070 - LTR67 LTR ERVL -4 553 347 234 245 20 92 chr12 14040685 14040783 -130241706 + MER102a DNA MER1_type 221 311 -19 384 358 101 33 chr12 14040874 14041660 -130240829 - L2 LINE L2 -342 2972 2134 1724 163 72 40 chr12 14042014 14042327 -130240162 - MLT1A1 LTR MaLR -5 360 33 2350 90 3 0 chr12 14042327 14042617 -130239872 + AluSg SINE Alu 1 291 -19 1724 163 72 40 chr12 14042617 14042652 -130239837 - MLT1A1 LTR MaLR -332 33 1 2324 102 0 0 chr12 14043165 14043460 -130239029 + AluSx SINE Alu 1 295 -17 2140 124 0 7 chr12 14044537 14044843 -130237646 + AluSx SINE Alu 1 304 -8 564 220 64 69 chr12 14045963 14046026 -130236463 + MER5A DNA MER1_type 13 75 -114 1476 197 61 10 chr12 14046026 14046149 -130236340 + AluJo SINE Alu 1 116 -196 201 39 0 0 chr12 14046149 14046175 -130236314 + (TTAAA)n Simple_repeat Simple_repeat 3 28 0 1476 197 61 10 chr12 14046175 14046346 -130236143 + AluJo SINE Alu 116 310 -2 564 220 64 69 chr12 14046346 14046455 -130236034 + MER5A DNA MER1_type 75 184 -5 241 292 31 0 chr12 14047055 14047120 -130235369 - L2 LINE L2 -1 3312 3246 21 0 0 0 chr12 14047251 14047272 -130235217 + AT_rich Low_complexity Low_complexity 1 21 0 258 241 35 0 chr12 14047280 14047338 -130235151 - MER91 DNA MER1_type -1 189 130 824 257 8 34 chr12 14048015 14048252 -130234237 - MIR SINE MIR -20 242 12 226 276 0 0 chr12 14048907 14048965 -130233524 + L1ME4a LINE L1 5871 5928 -1880 447 290 83 10 chr12 14048987 14049180 -130233309 + L2 LINE L2 2707 2913 -401 390 64 0 0 chr12 14049184 14049231 -130233258 + 5S rRNA rRNA 1 47 -74 1094 264 47 107 chr12 14049525 14050007 -130232482 - MER77 LTR ERV1 -11 594 154 225 154 0 0 chr12 14050234 14050273 -130232216 + (CA)n Simple_repeat Simple_repeat 2 40 0 263 200 0 0 chr12 14050273 14050328 -130232161 - MER4-int LTR ERV1 -5433 1165 1111 378 195 0 0 chr12 14050331 14050413 -130232076 + (CATA)n Simple_repeat Simple_repeat 1 82 0 4411 195 32 18 chr12 14050470 14051992 -130230497 - L1MA9 LINE L1 -30 6282 4739 255 322 34 34 chr12 14052946 14053123 -130229366 + L1ME4a LINE L1 5944 6120 -1 1419 143 4 13 chr12 14053564 14053802 -130228687 + MER46A DNA MER2_type 1 236 0 826 206 95 106 chr12 14054007 14054376 -130228113 + MLT1A1 LTR MaLR 1 365 0 3075 303 82 40 chr12 14054683 14056537 -130225952 - L2 LINE L2 -41 3272 1318 1796 148 148 34 chr12 14056713 14057097 -130225392 + MSTA LTR MaLR 1 428 0 194 350 78 17 chr12 14057229 14057409 -130225080 + L2 LINE L2 2848 3038 -234 204 125 0 0 chr12 14057542 14057574 -130224915 + (GGAA)n Simple_repeat Simple_repeat 3 34 0 352 349 47 6 chr12 14059119 14059291 -130223198 + MIR SINE MIR 2 180 -82 262 313 0 0 chr12 14060278 14060361 -130222128 + (TTCA)n Simple_repeat Simple_repeat 3 85 0 414 276 257 0 chr12 14061642 14061794 -130220695 - L2 LINE L2 0 3272 3082 406 253 77 82 chr12 14061777 14061959 -130220530 + MIR SINE MIR 13 193 -69 * 252 252 9 90 chr12 14062085 14062196 -130220293 - L2 LINE L2 -269 3003 2902 26 74 0 0 chr12 14063393 14063447 -130219042 + AT_rich Low_complexity Low_complexity 1 54 0 440 315 34 13 chr12 14063530 14063679 -130218810 - MIR SINE MIR -80 182 31 628 222 7 26 chr12 14064126 14064279 -130218210 - L1MA10 LINE L1 0 6334 6185 186 118 0 0 chr12 14067385 14067419 -130215070 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 833 163 14 14 chr12 14067423 14067570 -130214919 - FRAM SINE Alu -30 146 1 428 339 89 6 chr12 14067716 14067889 -130214600 - MIR SINE MIR -43 219 31 416 250 0 46 chr12 14068454 14068562 -130213927 + MIR SINE MIR 19 121 -87 2383 115 120 5 chr12 14068753 14069137 -130213352 + MSTA LTR MaLR 1 428 0 463 286 193 26 chr12 14069184 14069495 -130212994 - MLT1L LTR MaLR -4 611 249 1257 249 50 69 chr12 14069679 14070200 -130212289 + MLT1J LTR MaLR 1 511 0 513 283 33 7 chr12 14070291 14070443 -130212046 + MIR SINE MIR 32 187 -75 327 178 42 119 chr12 14070510 14070628 -130211861 - MIR3 SINE MIR -10 198 90 2832 68 120 0 chr12 14071443 14071843 -130210646 + LTR7 LTR ERV1 1 448 -2 24050 94 8 13 chr12 14071845 14075679 -130206810 + HERVH LTR ERV1 1 3993 -3720 4450 145 0 1 chr12 14075681 14076344 -130206145 + HERVH LTR ERV1 4488 5149 -2564 1442 130 19 0 chr12 14076345 14076561 -130205928 + HERVH LTR ERV1 5600 5819 -1894 2304 102 59 13 chr12 14076561 14076934 -130205555 + HERVH LTR ERV1 7324 7713 0 2645 69 149 0 chr12 14076934 14077324 -130205165 + LTR7 LTR ERV1 1 448 -2 250 246 58 0 chr12 14077633 14077702 -130204787 - MIR SINE MIR -108 154 82 * 362 258 62 23 chr12 14077698 14077826 -130204663 - MIR3 SINE MIR -6 202 70 191 303 91 45 chr12 14080163 14080295 -130202194 + MIR3 SINE MIR 5 142 -66 * 462 252 0 26 chr12 14080270 14080385 -130202104 + MIR SINE MIR 117 228 -34 229 242 0 55 chr12 14080945 14081036 -130201453 + C-rich Low_complexity Low_complexity 2 87 0 23 33 0 0 chr12 14081195 14081225 -130201264 + AT_rich Low_complexity Low_complexity 1 30 0 556 281 143 9 chr12 14081838 14082062 -130200427 - MIR SINE MIR -6 256 3 427 88 0 0 chr12 14082137 14082194 -130200295 + MER57A LTR ERV1 1 57 -346 1764 120 108 22 chr12 14082324 14082640 -130199849 + MER57A LTR ERV1 61 403 0 1964 141 0 0 chr12 14083277 14083574 -130198915 + AluSx SINE Alu 1 297 -15 248 331 15 59 chr12 14083626 14083762 -130198727 - MIR SINE MIR -72 190 61 352 323 67 73 chr12 14083995 14084265 -130198224 - L2 LINE L2 -23 3249 2980 2070 179 42 17 chr12 14084265 14084668 -130197821 + MLT2D LTR ERVL 2 414 0 352 323 67 73 chr12 14084668 14084725 -130197764 - L2 LINE L2 -292 2980 2924 883 169 43 60 chr12 14085089 14085273 -130197216 - MLT2D LTR ERVL 0 414 234 1107 127 35 6 chr12 14085275 14085448 -130197041 + AluSx SINE Alu 1 178 -134 328 217 171 70 chr12 14086097 14086226 -130196263 - L2 LINE L2 -20 3293 3152 2803 186 22 32 chr12 14086227 14086757 -130195732 + MLT2B3 LTR ERVL 1 525 -29 2932 188 18 99 chr12 14086757 14086832 -130195657 - MER72 LTR ERV1 0 722 642 3662 50 0 11 chr12 14086832 14087296 -130195193 + L1PA8 LINE L1 5713 6171 -1 2932 188 18 99 chr12 14087296 14087844 -130194645 - MER72 LTR ERV1 -80 642 172 1582 156 4 19 chr12 14087844 14088114 -130194375 + AluJo SINE Alu 7 272 -40 2932 188 18 99 chr12 14088114 14088264 -130194225 - MER72 LTR ERV1 -550 172 11 16809 166 30 20 chr12 14088289 14091176 -130191313 + ERVL-B3-B3 LTR ERVL 2 2918 -2846 9487 138 25 1 chr12 14091173 14092597 -130189892 + ERVL-B3-B3 LTR ERVL 3049 4507 -1257 * 357 67 0 33 chr12 14092597 14092657 -130189832 + MER65A LTR ERV1 1 58 -387 1994 141 3 0 chr12 14092657 14092954 -130189535 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr12 14092965 14092987 -130189502 + AT_rich Low_complexity Low_complexity 1 22 0 2308 159 23 5 chr12 14092987 14093383 -130189106 + MER65A LTR ERV1 43 445 0 4856 139 34 3 chr12 14093384 14094569 -130187920 + ERVL-B3-B3 LTR ERVL 4505 5758 -6 2810 173 10 89 chr12 14094574 14095170 -130187319 + MLT2B3 LTR ERVL 6 554 0 644 226 28 83 chr12 14095481 14095733 -130186756 - MER112 DNA MER1_type -6 254 17 2058 55 4 0 chr12 14095878 14096134 -130186355 + AluY SINE Alu 43 299 -12 515 327 65 54 chr12 14096145 14096589 -130185900 - L2 LINE L2 -1046 2268 1820 247 309 12 0 chr12 14097369 14097450 -130185039 - MIR SINE MIR -2 260 179 251 331 8 15 chr12 14097452 14097582 -130184907 + CT-rich Low_complexity Low_complexity 1 129 0 719 214 34 87 chr12 14097617 14097823 -130184666 - MIR SINE MIR -61 201 7 1138 285 54 29 chr12 14098642 14099161 -130183328 - HAL1 LINE L1 -1245 1262 731 1205 300 115 4 chr12 14099169 14099649 -130182840 - HAL1 LINE L1 -1972 535 3 401 313 48 12 chr12 14100278 14100444 -130182045 + MIR SINE MIR 33 204 -58 1438 229 132 24 chr12 14100587 14101042 -130181447 - MER74A LTR ERVL 0 558 55 942 159 0 7 chr12 14101143 14101294 -130181195 - MLT1A1 LTR MaLR -215 150 1 504 238 30 145 chr12 14101294 14101629 -130180860 + HAL1 LINE L1 2086 2458 -49 2796 143 0 36 chr12 14101629 14102076 -130180413 + Tigger2a DNA MER2_type 1 431 -3 311 65 22 0 chr12 14102077 14102123 -130180366 + (TG)n Simple_repeat Simple_repeat 2 48 0 504 238 30 145 chr12 14102123 14102255 -130180234 + HAL1 LINE L1 2457 2501 -6 915 129 0 29 chr12 14102279 14102418 -130180071 - FLAM_C SINE Alu -8 135 1 1809 218 32 13 chr12 14102994 14103370 -130179119 + MSTD LTR MaLR 1 383 -13 184 319 0 0 chr12 14104075 14104122 -130178367 + MIR3 SINE MIR 151 197 -11 189 282 7 74 chr12 14104168 14104275 -130178214 - MIR SINE MIR -105 103 12 1195 240 81 53 chr12 14104855 14105066 -130177423 - MLT1I LTR MaLR 0 409 180 2369 92 0 7 chr12 14105066 14105372 -130177117 - AluY SINE Alu -7 304 1 1195 240 81 53 chr12 14105372 14105556 -130176933 - MLT1I LTR MaLR -229 180 3 450 274 48 0 chr12 14105596 14105720 -130176769 + L2 LINE L2 3143 3272 0 2168 62 0 0 chr12 14105872 14106131 -130176358 + AluY SINE Alu 31 289 -22 417 194 10 20 chr12 14107584 14107682 -130174807 - MER58C DNA MER1_type -13 202 106 402 205 2 105 chr12 14107717 14107786 -130174703 - MER58 DNA MER1_type -122 93 55 2509 66 0 0 chr12 14107786 14108088 -130174401 + AluY SINE Alu 1 302 -9 402 205 2 105 chr12 14108088 14108138 -130174351 - MER58 DNA MER1_type -160 55 1 330 280 80 0 chr12 14109319 14109419 -130173070 - L2 LINE L2 -4 3268 3161 229 231 0 0 chr12 14110413 14110465 -130172024 - L2 LINE L2 0 3313 3262 2246 180 25 0 chr12 14110569 14110925 -130171564 + MLT1A1 LTR MaLR 1 365 0 331 198 74 25 chr12 14110928 14111009 -130171480 + L2 LINE L2 3188 3272 0 905 304 8 4 chr12 14112129 14112372 -130170117 - MLT1I LTR MaLR -4 405 162 470 288 94 0 chr12 14113166 14113336 -130169153 + MER112 DNA MER1_type 66 251 -9 279 0 0 0 chr12 14113379 14113410 -130169079 + (A)n Simple_repeat Simple_repeat 1 31 0 902 290 87 29 chr12 14113736 14114293 -130168196 - L1MEd LINE L1 -4862 1257 744 820 185 6 13 chr12 14114624 14114781 -130167708 - L1MA4 LINE L1 -9 6291 6136 358 328 22 8 chr12 14115059 14115193 -130167296 - L1MEd LINE L1 -5423 696 561 229 271 103 19 chr12 14115398 14115505 -130166984 - L1MEd LINE L1 -5993 126 11 375 248 168 18 chr12 14115523 14115636 -130166853 + L2 LINE L2 3139 3268 -4 408 330 50 17 chr12 14117078 14117257 -130165232 - MIR SINE MIR -74 188 4 324 83 0 0 chr12 14117508 14117556 -130164933 + (CA)n Simple_repeat Simple_repeat 2 49 0 219 368 56 0 chr12 14118153 14118278 -130164211 - L2 LINE L2 -3 3310 3179 614 218 60 68 chr12 14118948 14119262 -130163227 - LTR45B LTR ERV1 0 594 309 25 0 0 0 chr12 14119357 14119382 -130163107 + AT_rich Low_complexity Low_complexity 1 25 0 201 260 0 40 chr12 14120352 14120402 -130162087 + polypurine Low_complexity Low_complexity 1 48 0 1544 174 0 8 chr12 14120431 14120678 -130161811 - AluSx SINE Alu -65 247 3 528 16 0 0 chr12 14120760 14120821 -130161668 + (TA)n Simple_repeat Simple_repeat 1 61 0 873 137 0 58 chr12 14120825 14120964 -130161525 - FLAM_C SINE Alu -1 132 2 474 285 135 32 chr12 14121544 14121856 -130160633 + L1MEd LINE L1 895 1238 -4881 2391 103 0 3 chr12 14122166 14122476 -130160013 - AluSq SINE Alu -4 309 1 809 240 125 0 chr12 14122482 14122674 -130159815 + MER20 DNA MER1_type 3 218 -1 1103 196 22 48 chr12 14122823 14123094 -130159395 - L1MA10 LINE L1 -18 6316 6053 835 22 0 0 chr12 14123197 14123289 -130159200 - L1PA3 LINE L1 -4 6151 6060 21 71 0 0 chr12 14123466 14123508 -130158981 + AT_rich Low_complexity Low_complexity 1 42 0 1832 167 3 3 chr12 14124019 14124319 -130158170 + AluJo SINE Alu 1 300 -12 218 233 0 0 chr12 14125456 14125499 -130156990 + (TA)n Simple_repeat Simple_repeat 1 43 0 658 260 117 17 chr12 14125932 14126163 -130156326 - MIR SINE MIR -2 260 7 303 288 86 61 chr12 14126280 14126478 -130156011 - L1ME3A LINE L1 -5 6165 5963 1057 246 96 11 chr12 14126579 14126932 -130155557 - L1MC5 LINE L1 -433 7528 7146 1240 233 23 68 chr12 14126941 14127476 -130155013 - L1MC5 LINE L1 -832 6976 6488 1765 217 37 17 chr12 14127556 14127966 -130154523 + LTR52 LTR ERVL 1 418 -3 248 361 26 16 chr12 14128192 14128386 -130154103 - HAL1b LINE L1 -708 640 445 351 305 52 44 chr12 14128577 14128984 -130153505 - HAL1b LINE L1 -901 447 38 333 315 57 47 chr12 14130005 14130389 -130152100 - HAL1b LINE L1 -908 440 53 287 225 47 152 chr12 14131024 14131300 -130151189 - LTR41 LTR ERVL 0 773 527 511 228 76 35 chr12 14131611 14131756 -130150733 - LTR41 LTR ERVL -622 151 1 236 262 19 37 chr12 14132503 14132610 -130149879 - MLT-int LTR MaLR -30 1705 1601 2347 97 3 0 chr12 14132734 14133044 -130149445 - AluSp SINE Alu -2 311 1 300 247 41 0 chr12 14133955 14134065 -130148424 - MLT1F LTR MaLR 0 542 280 2460 38 41 0 chr12 14135599 14135889 -130146600 - AluY SINE Alu -9 302 1 286 310 69 0 chr12 14136480 14136596 -130145893 + L2 LINE L2 3136 3259 -13 767 239 45 0 chr12 14137735 14137911 -130144578 - MIR SINE MIR -10 252 69 205 179 0 0 chr12 14137937 14137976 -130144513 + L2 LINE L2 3275 3313 0 1078 223 50 88 chr12 14137996 14138372 -130144117 - MLT1A1 LTR MaLR 0 365 4 190 229 0 0 chr12 14139419 14139454 -130143035 - L2 LINE L2 -3 3310 3276 3289 131 3 74 chr12 14139613 14140247 -130142242 - L1MA5 LINE L1 0 6300 5712 231 392 150 7 chr12 14140357 14140510 -130141979 - L2 LINE L2 -54 3218 3044 569 296 47 6 chr12 14140527 14140696 -130141793 - MIR3 SINE MIR -13 195 20 795 112 0 0 chr12 14141376 14141492 -130140997 - L1MA3 LINE L1 -21 6284 6169 195 236 139 0 chr12 14142851 14142923 -130139566 + MIR3 SINE MIR 104 185 -23 665 258 167 65 chr12 14144359 14144743 -130137746 + MLT1J1 LTR MaLR 53 475 -36 246 330 70 0 chr12 14145319 14145434 -130137055 - MIR3 SINE MIR -48 160 38 2579 139 131 36 chr12 14145465 14145940 -130136549 - MLT2B1 LTR ERVL 0 520 1 555 209 6 52 chr12 14146090 14146262 -130136227 - LTR7 LTR ERV1 -17 433 270 1771 196 115 79 chr12 14146472 14147053 -130135436 - MLT1E2 LTR MaLR -24 602 1 423 0 0 0 chr12 14147845 14147892 -130134597 + (TG)n Simple_repeat Simple_repeat 1 47 0 393 223 29 0 chr12 14149505 14149644 -130132845 + CT-rich Low_complexity Low_complexity 2 144 0 382 345 103 30 chr12 14149652 14150293 -130132196 + L2 LINE L2 2554 3251 -21 223 282 29 94 chr12 14150787 14150957 -130131532 - MIR SINE MIR -1 261 103 307 188 130 0 chr12 14151295 14151364 -130131125 + L2 LINE L2 3200 3277 -36 806 219 97 25 chr12 14151527 14152109 -130130380 - MER4C LTR ERV1 0 695 1 465 119 0 60 chr12 14152148 14152163 -130130326 + MER96 DNA MER1_type? 1 15 -160 2623 178 78 98 chr12 14152163 14152905 -130129584 + LTR8A LTR ERV1 1 727 0 465 119 0 60 chr12 14152905 14152973 -130129516 + MER96 DNA MER1_type? 15 79 -96 1247 207 54 34 chr12 14153210 14153563 -130128926 - L1MD2 LINE L1 0 6359 6000 399 350 34 25 chr12 14153808 14154045 -130128444 + MARNA DNA Mariner 317 555 -31 2392 97 3 0 chr12 14154183 14154483 -130128006 - AluSx SINE Alu -10 302 2 776 288 56 84 chr12 14154898 14155360 -130127129 + MER115 DNA AcHobo 1 449 -244 299 250 39 90 chr12 14155701 14155815 -130126674 - MER5B DNA MER1_type -2 176 71 1053 166 17 0 chr12 14155815 14155990 -130126499 - MER5B DNA MER1_type 0 178 1 299 250 39 90 chr12 14155990 14156031 -130126458 - MER5B DNA MER1_type -107 71 29 902 324 141 34 chr12 14157040 14157971 -130124518 + L3 LINE CR1 198 1227 -350 3386 115 6 12 chr12 14158070 14158277 -130124212 + MER1A DNA MER1_type 53 260 -2442 2230 104 16 3 chr12 14158277 14158584 -130123905 + AluSx SINE Alu 1 311 -1 3386 115 6 12 chr12 14158584 14158856 -130123633 + MER1A DNA MER1_type 260 529 0 197 32 0 32 chr12 14160626 14160657 -130121832 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 44049 31 21 1 chr12 14160658 14166684 -130115805 - L1PA3 LINE L1 -4 6151 4 8240 17 0 0 chr12 14166686 14167734 -130114755 + L1PA2 LINE L1 5134 6181 0 14966 27 1 0 chr12 14167736 14169463 -130113026 - L1P LINE L1 -999 5147 3420 1941 162 0 0 chr12 14169465 14169761 -130112728 - AluSx SINE Alu -16 296 1 2056 193 56 40 chr12 14169823 14170320 -130112169 + MLT1D LTR MaLR 1 505 0 468 274 110 18 chr12 14170477 14170696 -130111793 + MIR SINE MIR 23 261 -1 325 294 184 0 chr12 14170789 14170925 -130111564 - MIR SINE MIR 0 262 102 2102 70 0 0 chr12 14170929 14171187 -130111302 + AluY SINE Alu 1 258 -53 2462 138 45 8 chr12 14171187 14171587 -130110902 + MSTA LTR MaLR 14 428 0 200 236 77 4 chr12 14171588 14171659 -130110830 - MIR SINE MIR -112 96 32 2160 122 7 0 chr12 14172527 14172830 -130109659 - AluSx SINE Alu -7 305 1 301 356 5 16 chr12 14174684 14174872 -130107617 + L2 LINE L2 2560 2745 -569 205 320 27 13 chr12 14174956 14175031 -130107458 - MER5A DNA MER1_type -85 104 29 22 0 0 0 chr12 14175387 14175409 -130107080 + AT_rich Low_complexity Low_complexity 1 22 0 190 300 40 0 chr12 14175947 14175997 -130106492 + L2 LINE L2 3196 3247 -25 28 48 0 0 chr12 14176096 14176138 -130106351 + AT_rich Low_complexity Low_complexity 1 42 0 1817 211 34 5 chr12 14176465 14176853 -130105636 - MLT1C LTR MaLR 0 467 69 2194 125 3 3 chr12 14176853 14177158 -130105331 - THE1B LTR MaLR 0 364 60 25 31 0 0 chr12 14178455 14178487 -130104002 + AT_rich Low_complexity Low_complexity 1 32 0 16664 177 30 20 chr12 14178694 14178822 -130103667 + L1MA4 LINE L1 6 131 -6351 1627 175 39 29 chr12 14178822 14179130 -130103359 + AluJo SINE Alu 1 311 -1 16664 177 30 20 chr12 14179130 14185301 -130097188 + L1MA4 LINE L1 131 6477 -5 656 297 131 50 chr12 14185358 14185779 -130096710 - L2 LINE L2 -669 2645 2191 333 329 98 14 chr12 14186737 14186880 -130095609 + MER5A DNA MER1_type 9 163 -26 367 269 199 13 chr12 14186922 14187078 -130095411 - MER5A DNA MER1_type -4 185 1 180 0 0 0 chr12 14187505 14187525 -130094964 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2514 60 0 25 chr12 14188637 14188951 -130093538 + AluY SINE Alu 1 306 -5 343 68 0 0 chr12 14188984 14189028 -130093461 + MADE1 DNA Mariner 35 78 -2 276 297 62 31 chr12 14189263 14189391 -130093098 + MIR SINE MIR 126 257 -5 836 269 149 36 chr12 14189944 14190192 -130092297 + L2 LINE L2 2851 3070 -243 320 0 25 0 chr12 14190192 14190232 -130092257 + (TG)n Simple_repeat Simple_repeat 1 41 0 836 269 149 36 chr12 14190232 14190399 -130092090 + L2 LINE L2 3070 3313 0 377 245 58 36 chr12 14190405 14190544 -130091945 - MIR3 SINE MIR -63 145 4 397 330 154 0 chr12 14190671 14190853 -130091636 + L2 LINE L2 2855 3064 -249 1950 131 125 12 chr12 14190853 14191181 -130091308 + MLT1A1 LTR MaLR 1 365 0 302 365 43 26 chr12 14192093 14192208 -130090281 - L2 LINE L2 -17 3255 3139 1587 75 0 75 chr12 14192743 14192982 -130089507 + AluSp SINE Alu 91 311 -2 223 352 14 28 chr12 14193247 14193318 -130089171 - L2 LINE L2 -18 3254 3185 250 363 48 8 chr12 14193851 14193975 -130088514 + L3 LINE CR1 1407 1535 -42 195 316 38 13 chr12 14194623 14194702 -130087787 + L3b LINE CR1 1353 1433 -150 536 303 65 22 chr12 14196022 14196274 -130086215 + MIR SINE MIR 3 262 0 210 200 15 31 chr12 14196522 14196587 -130085902 + (TG)n Simple_repeat Simple_repeat 2 65 0 201 176 0 0 chr12 14196582 14196616 -130085873 + (CATATA)n Simple_repeat Simple_repeat 1 34 0 * 1589 209 103 32 chr12 14197093 14197529 -130084960 + MLT1C LTR MaLR 1 467 0 1373 201 14 7 chr12 14198761 14199040 -130083449 - L1PA16 LINE L1 -4 6162 5882 509 341 130 24 chr12 14199040 14199491 -130082998 + L2 LINE L2 2097 2599 -715 1014 211 82 5 chr12 14199648 14199856 -130082633 + MER58A DNA MER1_type 1 224 0 320 349 0 0 chr12 14200197 14200306 -130082183 + L2 LINE L2 2624 2732 -582 390 306 150 60 chr12 14200497 14200863 -130081626 + L2 LINE L2 2874 3272 0 267 378 30 43 chr12 14201146 14201376 -130081113 + L2 LINE L2 2819 3045 -227 306 0 0 0 chr12 14201439 14201473 -130081016 + (T)n Simple_repeat Simple_repeat 1 34 0 222 213 115 33 chr12 14201507 14201568 -130080921 + L2 LINE L2 3168 3233 -39 707 206 0 32 chr12 14201683 14201809 -130080680 + AluJo SINE Alu 5 126 -186 26 30 0 0 chr12 14201809 14201842 -130080647 + AT_rich Low_complexity Low_complexity 1 33 0 2078 65 0 0 chr12 14201870 14202116 -130080373 - L1PA7 LINE L1 -5 6149 5904 1091 166 5 26 chr12 14202116 14202309 -130080180 + AluJo SINE Alu 116 304 -8 296 258 67 0 chr12 14203414 14203503 -130078986 + L1ME4a LINE L1 5518 5612 -509 295 350 78 16 chr12 14203590 14203847 -130078642 + MLT1K LTR MaLR 81 353 -235 1117 228 176 24 chr12 14203875 14204335 -130078154 + L1ME4a LINE L1 5589 6118 -3 253 221 0 23 chr12 14205038 14205124 -130077365 + CT-rich Low_complexity Low_complexity 1 84 0 384 294 96 37 chr12 14206471 14206689 -130075800 - MIR SINE MIR -8 254 24 724 279 77 0 chr12 14206941 14207163 -130075326 + MIR SINE MIR 2 240 -22 991 279 110 7 chr12 14207197 14207505 -130074984 + L1ME3A LINE L1 5537 5876 -294 8177 121 10 43 chr12 14207516 14208852 -130073637 - THE1C-int LTR MaLR -286 1294 3 2065 153 38 19 chr12 14208854 14209220 -130073269 - THE1C LTR MaLR 0 375 3 2988 194 36 23 chr12 14209324 14209936 -130072553 + MLT1E3 LTR MaLR 2 621 -3 691 76 0 11 chr12 14209961 14210053 -130072436 - 5S rRNA rRNA -30 91 1 1487 222 48 52 chr12 14211149 14211671 -130070818 - L1MC4 LINE L1 -25 8017 7498 266 275 147 18 chr12 14211747 14211856 -130070633 - L2 LINE L2 -213 3059 2937 291 247 22 0 chr12 14212038 14212127 -130070362 - L1ME LINE L1 -325 5796 5706 208 158 26 0 chr12 14212141 14212179 -130070310 - L2 LINE L2 -20 3252 3214 * 241 320 99 33 chr12 14212178 14212359 -130070130 - MIR SINE MIR -20 242 50 181 200 29 57 chr12 14212589 14212659 -130069830 - L2 LINE L2 -524 2790 2723 961 244 133 4 chr12 14212732 14213002 -130069487 - L1MC4 LINE L1 -531 7511 7207 6272 167 44 32 chr12 14213096 14213459 -130069030 - L1MB1 LINE L1 -1 6167 5810 1946 102 113 0 chr12 14213459 14213734 -130068755 - AluSq SINE Alu -7 306 1 6272 167 44 32 chr12 14213734 14215563 -130066926 - L1MB1 LINE L1 -358 5810 3951 2050 237 70 15 chr12 14215569 14216165 -130066324 - L1MC4a LINE L1 -840 6968 6340 2035 189 88 16 chr12 14216178 14216664 -130065825 - L1ME2 LINE L1 -34 6130 5610 297 219 0 16 chr12 14216664 14216728 -130065761 + MLT1G1 LTR MaLR 1 63 -532 243 353 210 8 chr12 14216919 14217418 -130065071 + L2 LINE L2 2263 2862 -452 237 342 99 30 chr12 14217513 14217776 -130064713 + L2 LINE L2 3021 3301 -12 446 349 109 16 chr12 14218219 14218649 -130063840 + L2 LINE L2 2327 2796 -518 190 256 0 128 chr12 14218813 14218969 -130063520 + L2 LINE L2 2924 3059 -213 375 337 85 67 chr12 14219835 14220283 -130062206 + L2 LINE L2 2810 3265 -7 23 33 0 0 chr12 14221179 14221209 -130061280 + AT_rich Low_complexity Low_complexity 1 30 0 980 108 2 6 chr12 14221753 14221922 -130060567 - THE1C LTR MaLR -189 166 1 378 0 0 0 chr12 14222601 14222643 -130059846 + (TG)n Simple_repeat Simple_repeat 2 43 0 2471 97 44 36 chr12 14222912 14223273 -130059216 + THE1B LTR MaLR 1 364 0 201 329 12 0 chr12 14224063 14224145 -130058344 + (CACCAT)n Simple_repeat Simple_repeat 1 83 0 1742 189 96 23 chr12 14224846 14225242 -130057247 + MLT1C LTR MaLR 1 425 -42 1946 165 0 10 chr12 14226320 14226629 -130055860 - AluJo SINE Alu -6 306 1 308 205 12 72 chr12 14227296 14227379 -130055110 - L2 LINE L2 -10 3303 3226 21 36 0 0 chr12 14228198 14228226 -130054263 + AT_rich Low_complexity Low_complexity 1 28 0 326 286 109 26 chr12 14228384 14228650 -130053839 + L1ME3A LINE L1 2220 2507 -3639 770 118 0 0 chr12 14228726 14228828 -130053661 - U6 snRNA snRNA -5 102 1 504 293 100 20 chr12 14228834 14229234 -130053255 + L1ME3A LINE L1 2539 2970 -3176 476 232 61 67 chr12 14229235 14229399 -130053090 - MER63A DNA MER1_type -5 205 43 2983 284 100 14 chr12 14229434 14231039 -130051450 + L1ME3A LINE L1 2962 4704 -1442 329 259 84 23 chr12 14231056 14231187 -130051302 + L1ME3A LINE L1 4869 5007 -1139 1043 248 104 60 chr12 14231211 14231948 -130050541 + L1ME3A LINE L1 5174 5949 -221 447 294 247 9 chr12 14232462 14232782 -130049707 - L2 LINE L2 -6 3266 2871 187 295 49 16 chr12 14232965 14233026 -130049463 - L2 LINE L2 -10 3262 3200 480 253 34 13 chr12 14233589 14233741 -130048748 + MIR SINE MIR 38 192 -62 1843 117 19 0 chr12 14235313 14235569 -130046920 + AluSq SINE Alu 1 261 -52 288 53 0 0 chr12 14235583 14235621 -130046868 + (TG)n Simple_repeat Simple_repeat 1 38 0 2341 93 0 7 chr12 14236028 14236330 -130046159 - AluSc SINE Alu -9 300 1 213 275 43 0 chr12 14236896 14236965 -130045524 + MIR SINE MIR 104 175 -87 184 290 0 32 chr12 14236945 14237007 -130045482 + L2 LINE L2 3242 3301 -12 * 235 247 52 13 chr12 14237366 14237443 -130045046 - L2 LINE L2 -1 3312 3233 348 64 0 0 chr12 14238253 14238300 -130044189 + (TG)n Simple_repeat Simple_repeat 2 48 0 312 242 167 25 chr12 14238648 14238768 -130043721 - MIR SINE MIR -55 153 17 683 228 142 27 chr12 14238965 14239184 -130043305 + MIR SINE MIR 2 245 -17 318 233 116 0 chr12 14240340 14240426 -130042063 - MIR SINE MIR -76 186 91 200 209 134 15 chr12 14241281 14241348 -130041141 + L2 LINE L2 2889 2963 -350 262 226 220 30 chr12 14242087 14242255 -130040234 - MIR SINE MIR -62 200 1 279 315 72 55 chr12 14242265 14242446 -130040043 - L2 LINE L2 -21 3251 3068 1195 204 68 34 chr12 14243486 14243780 -130038709 + MER93b LTR ERV1 1 304 -69 194 184 92 53 chr12 14243988 14244064 -130038425 - MER5A DNA MER1_type -1 188 110 190 279 29 0 chr12 14244008 14244076 -130038413 + MER5A DNA MER1_type 33 102 -87 * 311 299 68 0 chr12 14246092 14246209 -130036280 + L1M4 LINE L1 4062 4186 -1960 899 139 0 22 chr12 14246209 14246346 -130036143 + FLAM_C SINE Alu 1 134 -9 2236 264 59 53 chr12 14246346 14246592 -130035897 + L1M4 LINE L1 4176 4419 -1727 1487 109 33 0 chr12 14246592 14246802 -130035687 + AluSg/x SINE Alu 83 299 -11 2236 264 59 53 chr12 14246802 14247767 -130034722 + L1M4 LINE L1 4419 5395 -751 212 311 104 9 chr12 14248227 14248333 -130034156 - L2 LINE L2 -8 3264 3149 2442 110 52 25 chr12 14249224 14249589 -130032900 - THE1C LTR MaLR 0 375 1 755 73 257 0 chr12 14249679 14249788 -130032701 - MER85 DNA T2_type 0 139 3 1985 140 13 13 chr12 14251640 14251947 -130030542 - AluSx SINE Alu -5 307 1 2975 223 115 43 chr12 14252245 14253402 -130029087 + L1MC4 LINE L1 6808 8042 0 593 213 148 35 chr12 14253582 14253784 -130028705 - MIR SINE MIR -11 251 27 2269 115 0 0 chr12 14253786 14254082 -130028407 - AluSx SINE Alu -16 296 1 634 265 18 84 chr12 14254827 14255006 -130027483 + MIR SINE MIR 1 166 -63 1852 175 83 35 chr12 14257208 14257556 -130024933 + MLT1A1 LTR MaLR 1 365 0 1348 148 49 9 chr12 14257908 14258131 -130024358 + AluSg/x SINE Alu 81 312 0 1377 168 0 50 chr12 14258355 14258593 -130023896 + Tigger5 DNA MER2_type 1 226 -2097 * 2803 152 50 12 chr12 14258576 14259056 -130023433 + Tigger5 DNA MER2_type 1826 2323 0 365 152 65 54 chr12 14259549 14259641 -130022848 + MLT1I LTR MaLR 68 160 -249 232 286 24 0 chr12 14259710 14259794 -130022695 + MLT1J2 LTR MaLR 365 450 0 188 228 130 54 chr12 14259833 14259925 -130022564 + L2 LINE L2 2685 2783 -531 6955 119 30 8 chr12 14262387 14264124 -130018365 - L1MA1 LINE L1 -4 6298 4525 446 272 56 44 chr12 14264241 14264421 -130018068 - MIR3 SINE MIR -23 185 4 827 206 120 5 chr12 14264570 14264754 -130017735 + MER3 DNA MER1_type 1 205 -4 304 289 48 0 chr12 14265243 14265326 -130017163 - L2 LINE L2 -1 3271 3185 1436 235 77 14 chr12 14265817 14266246 -130016243 - HsTC2 DNA Tc2 0 1900 1269 1336 267 42 25 chr12 14266259 14266739 -130015750 - HsTC2 DNA Tc2 -1410 488 1 302 244 199 15 chr12 14267133 14267264 -130015225 - L2 LINE L2 0 3313 3159 1111 262 93 21 chr12 14269203 14269284 -130013205 + MLT1C LTR MaLR 17 91 -376 1969 56 0 0 chr12 14269284 14269515 -130012974 + AluY SINE Alu 70 300 -11 1111 262 93 21 chr12 14269515 14269853 -130012636 + MLT1C LTR MaLR 91 466 -1 1462 230 75 107 chr12 14270376 14270936 -130011553 - MLT1F1 LTR MaLR 0 567 1 630 294 32 37 chr12 14271160 14271378 -130011111 + MIR SINE MIR 38 254 -8 497 352 65 51 chr12 14274013 14274398 -130008091 - L2 LINE L2 -446 2868 2473 935 174 26 62 chr12 14274398 14274593 -130007896 + MER5A DNA MER1_type 1 188 -1 497 352 65 51 chr12 14274593 14274713 -130007776 - L2 LINE L2 -841 2473 2356 652 202 0 0 chr12 14276184 14276293 -130006196 + AluJb SINE Alu 154 262 -50 359 258 23 154 chr12 14276889 14277110 -130005379 + MIR SINE MIR 59 250 -12 766 189 112 39 chr12 14277124 14277330 -130005159 + MIR SINE MIR 12 232 -30 256 289 44 59 chr12 14277527 14277662 -130004827 + MER5A DNA MER1_type 56 188 -1 257 328 63 32 chr12 14278113 14278302 -130004187 - L2 LINE L2 -527 2787 2593 2254 304 128 27 chr12 14278457 14280176 -130002313 - L2 LINE L2 -6 3307 1413 11186 194 38 25 chr12 14280193 14281132 -130001357 - L1MB3 LINE L1 -6 6410 5485 640 162 36 0 chr12 14281132 14281243 -130001246 - L1MC1 LINE L1 0 6333 6219 11186 194 38 25 chr12 14281243 14285594 -129996895 - L1MB3 LINE L1 -931 5485 976 2122 99 72 77 chr12 14285594 14285969 -129996520 + THE1C LTR MaLR 3 375 0 11186 194 38 25 chr12 14285969 14286477 -129996012 - L1MB3 LINE L1 -5440 976 476 240 59 0 0 chr12 14286577 14286611 -129995878 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1799 161 7 3 chr12 14286614 14286900 -129995589 - AluSx SINE Alu -25 287 1 14802 153 19 3 chr12 14286934 14290117 -129992372 - L1PA11 LINE L1 0 6174 2938 2584 183 62 7 chr12 14290117 14290566 -129991923 - L1MB3 LINE L1 -5909 475 2 740 175 15 44 chr12 14290574 14290711 -129991778 - FLAM_A SINE Alu 0 133 1 486 275 68 48 chr12 14290810 14291017 -129991472 - MIR SINE MIR 0 262 52 887 289 135 33 chr12 14291031 14291512 -129990977 - L2 LINE L2 -1988 1326 797 40 0 0 0 chr12 14292143 14292183 -129990306 + AT_rich Low_complexity Low_complexity 1 40 0 701 262 43 19 chr12 14292340 14292550 -129989939 + MER112 DNA MER1_type 6 220 -40 288 332 47 25 chr12 14293683 14293918 -129988571 - L2 LINE L2 -888 2426 2187 320 189 0 103 chr12 14295389 14295747 -129986742 + GA-rich Low_complexity Low_complexity 1 321 0 291 351 24 6 chr12 14295441 14295609 -129986880 + (GAATG)n Simple_repeat Simple_repeat 1 171 0 * 349 386 0 6 chr12 14295602 14295850 -129986639 + (GAGTG)n Simple_repeat Simple_repeat 1 246 0 414 299 0 17 chr12 14296000 14296117 -129986372 - L2 LINE L2 -1 3312 3198 540 308 48 0 chr12 14296126 14296334 -129986155 + MIR SINE MIR 40 257 -5 445 308 99 19 chr12 14296888 14297099 -129985390 + MIR SINE MIR 25 252 -10 2234 105 7 0 chr12 14297101 14297405 -129985084 - AluSx SINE Alu -1 311 6 885 247 135 29 chr12 14298376 14298761 -129983728 + L2 LINE L2 2887 3312 -1 181 270 70 30 chr12 14298957 14299057 -129983432 - L2 LINE L2 -190 3123 3020 207 298 142 52 chr12 14299254 14299563 -129982926 - L2 LINE L2 -557 2757 2421 184 286 13 26 chr12 14299818 14299895 -129982594 + MIR SINE MIR 88 163 -99 180 0 0 0 chr12 14301158 14301178 -129981311 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 384 254 91 48 chr12 14302249 14302414 -129980075 + MIR SINE MIR 41 212 -50 480 190 15 102 chr12 14302807 14302944 -129979545 + L2 LINE L2 3189 3313 0 31 58 0 0 chr12 14303216 14303268 -129979221 + AT_rich Low_complexity Low_complexity 1 52 0 481 256 100 0 chr12 14303987 14304147 -129978342 - LTR50 LTR ERVL -619 176 1 350 326 11 45 chr12 14304540 14304718 -129977771 + MIR SINE MIR 81 252 -10 320 271 226 28 chr12 14305072 14305249 -129977240 + MIR SINE MIR 48 259 -3 543 214 89 36 chr12 14306700 14306868 -129975621 + MER5B DNA MER1_type 2 178 0 1723 174 10 3 chr12 14307588 14307918 -129974571 + AluJb SINE Alu 5 312 0 837 215 92 33 chr12 14308710 14309101 -129973388 + L1MC5 LINE L1 7393 7806 -155 250 254 0 0 chr12 14310057 14310112 -129972377 + (CA)n Simple_repeat Simple_repeat 2 56 0 5581 267 140 23 chr12 14311593 14314509 -129967980 + L2 LINE L2 41 3296 -17 306 164 0 0 chr12 14316979 14317034 -129965455 + (TA)n Simple_repeat Simple_repeat 2 56 0 31 0 0 0 chr12 14318739 14318770 -129963719 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 14323143 14323164 -129959325 + AT_rich Low_complexity Low_complexity 1 21 0 209 386 33 26 chr12 14323164 14323317 -129959172 - L2 LINE L2 -14 3258 3105 210 334 168 14 chr12 14323819 14324625 -129957864 - L2 LINE L2 -788 2526 1597 292 343 29 0 chr12 14336319 14336459 -129946030 + GA-rich Low_complexity Low_complexity 1 144 0 2373 185 12 51 chr12 14338255 14338741 -129943748 + MLT1C LTR MaLR 1 467 0 237 167 0 0 chr12 14341019 14341073 -129941416 + GA-rich Low_complexity Low_complexity 1 54 0 750 258 21 42 chr12 14342028 14342221 -129940268 + MIR SINE MIR 18 207 -55 2382 72 0 0 chr12 14342221 14342511 -129939978 + AluY SINE Alu 1 290 -21 750 258 21 42 chr12 14342511 14342557 -129939932 + MIR SINE MIR 207 252 -10 318 341 61 12 chr12 14343102 14343266 -129939223 - MIR3 SINE MIR -25 183 12 28 29 0 0 chr12 14343717 14343752 -129938737 + AT_rich Low_complexity Low_complexity 1 35 0 1995 218 91 11 chr12 14343803 14344339 -129938150 + L1M4 LINE L1 4656 5234 -912 2004 146 0 7 chr12 14344428 14344766 -129937723 + AluJb SINE Alu 1 312 0 251 345 3 6 chr12 14344780 14344890 -129937599 + MIR SINE MIR 13 121 -87 21 36 0 0 chr12 14345475 14345503 -129936986 + AT_rich Low_complexity Low_complexity 1 28 0 1911 170 0 19 chr12 14345586 14345904 -129936585 - AluSx SINE Alu 0 312 1 218 298 58 19 chr12 14346031 14346135 -129936354 - MIR SINE MIR -117 145 38 286 281 74 30 chr12 14346782 14346917 -129935572 - L2 LINE L2 0 3313 3173 238 206 0 32 chr12 14346917 14346980 -129935509 + (TTCA)n Simple_repeat Simple_repeat 4 64 0 233 295 74 25 chr12 14346985 14347107 -129935382 - L2 LINE L2 -7 3306 3179 420 253 0 0 chr12 14347145 14347232 -129935257 - FLAM SINE Alu -17 126 40 2189 214 57 9 chr12 14347235 14347762 -129934727 + MLT1H1 LTR MaLR 4 555 0 544 300 33 33 chr12 14347768 14348011 -129934478 - L2 LINE L2 -164 3149 2907 838 251 57 16 chr12 14348360 14348607 -129933882 + MIR SINE MIR 6 262 0 249 180 0 0 chr12 14348610 14348660 -129933829 + (CAT)n Simple_repeat Simple_repeat 2 51 0 2021 217 69 11 chr12 14349783 14350249 -129932240 - L1ME1 LINE L1 -62 6104 5612 2246 134 0 0 chr12 14350679 14350978 -129931511 + AluSx SINE Alu 1 299 -13 277 355 11 21 chr12 14351002 14351095 -129931394 + MIR SINE MIR 19 110 -152 630 226 102 0 chr12 14352337 14352514 -129929975 - MIR SINE MIR -21 241 47 333 215 141 7 chr12 14353170 14353319 -129929170 + L2 LINE L2 2835 3003 -310 423 250 38 30 chr12 14353333 14353465 -129929024 + L2 LINE L2 3158 3290 -23 186 118 0 0 chr12 14353465 14353499 -129928990 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 326 229 90 16 chr12 14354587 14354709 -129927780 - MER103 DNA DNA -32 134 4 183 343 29 0 chr12 14354788 14354858 -129927631 - MIR SINE MIR -56 152 81 190 284 0 74 chr12 14354891 14354972 -129927517 - L2 LINE L2 -1 3312 3238 201 184 26 0 chr12 14355204 14355242 -129927247 - L2 LINE L2 -6 3266 3228 489 247 42 18 chr12 14355993 14356159 -129926330 - L2 LINE L2 0 3313 3144 2032 152 10 0 chr12 14356371 14356706 -129925783 - AluJb SINE Alu 0 338 1 503 30 0 242 chr12 14356931 14357030 -129925459 - MADE1 DNA Mariner -3 77 3 220 353 45 45 chr12 14357444 14357733 -129924756 + L3 LINE CR1 646 934 -643 530 168 10 0 chr12 14358090 14358191 -129924298 - MER53 DNA DNA -80 109 8 4467 64 4 20 chr12 14359273 14359833 -129922656 - L1PA8 LINE L1 0 6172 5622 661 233 35 6 chr12 14360422 14360594 -129921895 - MIR SINE MIR -7 255 79 233 298 140 18 chr12 14360571 14360685 -129921804 + MIR SINE MIR 87 214 -48 * 336 289 104 52 chr12 14361044 14361217 -129921272 - L2 LINE L2 -18 3254 3073 1681 185 28 71 chr12 14361234 14361629 -129920860 + MER83B LTR ERV1 1 378 0 7563 53 10 0 chr12 14362132 14363736 -129918753 + L1PA7 LINE L1 4525 6154 0 507 247 62 104 chr12 14366053 14366251 -129916238 + MIR SINE MIR 2 188 -74 4617 93 30 3 chr12 14366251 14366874 -129915615 + MER51C LTR ERV1 1 640 0 507 247 62 104 chr12 14366874 14366934 -129915555 + MIR SINE MIR 188 249 -13 201 147 0 0 chr12 14369243 14369277 -129913212 + (TCCC)n Simple_repeat Simple_repeat 1 34 0 237 65 0 0 chr12 14369539 14369570 -129912919 + (TG)n Simple_repeat Simple_repeat 2 32 0 1117 210 98 88 chr12 14370202 14370659 -129911830 - MLT1C LTR MaLR 0 467 6 334 271 209 0 chr12 14372498 14372627 -129909862 + MIR SINE MIR 93 248 -14 235 261 0 14 chr12 14372656 14372725 -129909764 + (TAA)n Simple_repeat Simple_repeat 3 70 0 458 312 16 8 chr12 14372868 14372993 -129909496 + MIR SINE MIR 29 154 -108 250 365 10 19 chr12 14374332 14374436 -129908053 - L2 LINE L2 -217 3055 2953 279 0 0 0 chr12 14374572 14374603 -129907886 + (TC)n Simple_repeat Simple_repeat 2 32 0 288 0 0 0 chr12 14374604 14374636 -129907853 + (CA)n Simple_repeat Simple_repeat 2 33 0 2470 139 37 51 chr12 14375217 14375649 -129906840 - MSTB1 LTR MaLR -4 428 3 573 52 102 0 chr12 14376203 14376535 -129905954 + (TA)n Simple_repeat Simple_repeat 1 365 0 2621 47 0 0 chr12 14378543 14378843 -129903646 + AluY SINE Alu 1 300 -11 355 280 193 33 chr12 14379687 14379837 -129902652 - MER5B DNA MER1_type -3 175 2 369 309 65 16 chr12 14379838 14379961 -129902528 + MER5B DNA MER1_type 46 174 -4 264 372 25 40 chr12 14381726 14381925 -129900564 - L3 LINE CR1 -444 1133 938 282 323 126 0 chr12 14382419 14382586 -129899903 - MIR SINE MIR -73 189 2 510 286 136 28 chr12 14382651 14382864 -129899625 + MIR SINE MIR 21 256 -6 201 94 0 0 chr12 14383068 14383100 -129899389 + (A)n Simple_repeat Simple_repeat 1 32 0 300 322 125 7 chr12 14383293 14383445 -129899044 - MIR3 SINE MIR -20 188 19 397 352 28 22 chr12 14383766 14383948 -129898541 - MIR3 SINE MIR -7 201 19 766 234 62 4 chr12 14384932 14385158 -129897331 - L1ME3A LINE L1 -1 6169 5931 310 305 130 0 chr12 14385920 14386051 -129896438 - L2 LINE L2 -2 3270 3123 223 350 109 42 chr12 14387456 14387767 -129894722 + L2 LINE L2 2492 2823 -491 713 327 92 53 chr12 14387838 14388499 -129893990 + L3 LINE CR1 320 1080 -497 242 286 0 14 chr12 14388641 14388711 -129893778 - L2 LINE L2 -1 3271 3203 488 269 185 23 chr12 14388723 14388939 -129893550 - MIR SINE MIR -10 252 2 517 242 72 41 chr12 14389367 14389561 -129892928 - MER63A DNA MER1_type -10 200 1 213 315 0 0 chr12 14389661 14389734 -129892755 + MIR SINE MIR 68 140 -122 213 213 131 0 chr12 14389704 14389765 -129892724 + MIR3 SINE MIR 112 180 -28 264 30 0 0 chr12 14390659 14390692 -129891797 + (T)n Simple_repeat Simple_repeat 1 33 0 2155 168 36 36 chr12 14391610 14392002 -129890487 - MSTD LTR MaLR -4 392 1 248 267 47 12 chr12 14392228 14392314 -129890175 - L1ME3A LINE L1 -303 5818 5730 548 293 82 33 chr12 14392347 14392826 -129889663 - L1ME3A LINE L1 -751 5395 5158 272 169 0 108 chr12 14394499 14394564 -129887925 + MIR SINE MIR 72 129 -133 326 311 19 28 chr12 14395679 14395785 -129886704 + MIR SINE MIR 10 114 -148 201 121 0 0 chr12 14395856 14395889 -129886600 + (C)n Simple_repeat Simple_repeat 1 33 0 267 254 16 0 chr12 14396348 14396411 -129886078 + MLT1K LTR MaLR 522 585 -3 342 287 61 0 chr12 14396423 14396538 -129885951 + MIR SINE MIR 129 250 -12 377 240 0 0 chr12 14397037 14397112 -129885377 - MIR SINE MIR -184 78 4 202 307 172 17 chr12 14398455 14398693 -129883796 + L2 LINE L2 2600 2874 -440 395 332 46 98 chr12 14398730 14399209 -129883280 + L2 LINE L2 2817 3270 -2 326 276 41 24 chr12 14399272 14399395 -129883094 - MIR SINE MIR 0 262 138 567 257 120 68 chr12 14399465 14399874 -129882615 + MLT1H LTR MaLR 107 536 -13 1688 154 74 40 chr12 14399874 14400225 -129882264 - THE1C LTR MaLR -12 363 1 384 323 24 16 chr12 14400663 14400790 -129881699 - MIR SINE MIR -128 134 7 376 230 296 7 chr12 14401849 14401984 -129880505 + MER5B DNA MER1_type 3 176 -2 637 216 167 0 chr12 14402264 14402426 -129880063 + MER5A DNA MER1_type 1 189 0 243 373 59 25 chr12 14403204 14403322 -129879167 - L2 LINE L2 -19 3253 3132 1483 246 73 26 chr12 14403352 14403778 -129878711 - MLT1J1 LTR MaLR 0 446 1 1611 281 91 12 chr12 14404918 14405765 -129876724 - L2 LINE L2 -1 3312 2380 848 260 39 5 chr12 14405797 14406005 -129876484 + MIR SINE MIR 39 253 -9 527 310 75 19 chr12 14406001 14406214 -129876275 - L2 LINE L2 -900 2414 2190 * 279 257 168 18 chr12 14408106 14408219 -129874270 - MIR SINE MIR -113 149 20 280 343 102 6 chr12 14408463 14408629 -129873860 - L3b LINE CR1 -295 1288 1107 347 296 22 22 chr12 14408805 14408984 -129873505 + CT-rich Low_complexity Low_complexity 2 180 0 1132 161 0 0 chr12 14409157 14409325 -129873164 + FRAM SINE Alu 2 169 -7 243 0 0 0 chr12 14410124 14410151 -129872338 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1894 139 29 4 chr12 14410151 14410424 -129872065 - AluSx SINE Alu -32 280 1 501 373 18 9 chr12 14410544 14410761 -129871728 - L3 LINE CR1 -753 824 606 2015 127 3 7 chr12 14410957 14411275 -129871214 + AluSx SINE Alu 1 317 0 370 256 66 16 chr12 14411400 14411521 -129870968 + MIR SINE MIR 17 143 -65 365 332 100 14 chr12 14411758 14411978 -129870511 - MIR SINE MIR -18 244 6 15984 123 8 3 chr12 14412270 14414675 -129867814 - Tigger1 DNA MER2_type 0 2418 1 355 181 176 21 chr12 14415510 14415625 -129866864 + MLT1E LTR MaLR 45 160 -433 269 197 49 0 chr12 14415612 14415673 -129866816 + MLT1E LTR MaLR 121 184 -409 * 348 161 0 0 chr12 14415673 14415735 -129866754 + CT-rich Low_complexity Low_complexity 3 64 0 860 152 8 0 chr12 14415747 14415879 -129866610 - FLAM_C SINE Alu 0 133 1 1373 243 35 50 chr12 14415908 14416307 -129866182 + MLT1E LTR MaLR 201 593 0 189 320 0 40 chr12 14416380 14416455 -129866034 - MIR SINE MIR -103 105 34 214 338 101 36 chr12 14417284 14417423 -129865066 - L2 LINE L2 -10 3262 3115 540 311 81 5 chr12 14418038 14418260 -129864229 + MIR SINE MIR 6 244 -18 371 250 56 7 chr12 14418506 14418650 -129863839 + MER103 DNA DNA 6 156 -10 368 231 48 48 chr12 14418799 14418946 -129863543 + MIR3 SINE MIR 58 204 -4 545 257 68 99 chr12 14419674 14419997 -129862492 + L2 LINE L2 3001 3313 0 434 296 42 42 chr12 14420841 14420983 -129861506 + MIR SINE MIR 51 192 -70 280 282 126 0 chr12 14420999 14421102 -129861387 - L2 LINE L2 -1 3312 3197 240 339 11 85 chr12 14421126 14421303 -129861186 + L2 LINE L2 2896 3059 -213 354 329 41 70 chr12 14421448 14421691 -129860798 - L2 LINE L2 -213 3059 2824 450 336 168 23 chr12 14421972 14422705 -129859784 - L2 LINE L2 -530 2784 1946 654 248 33 33 chr12 14424618 14424828 -129857661 + MIR SINE MIR 23 232 -30 252 242 11 84 chr12 14425110 14425205 -129857284 + L2 LINE L2 3223 3310 -3 511 232 19 57 chr12 14425858 14426015 -129856474 - MIR3 SINE MIR -6 202 47 2255 91 3 7 chr12 14426975 14427271 -129855218 + AluSp SINE Alu 1 295 -18 300 213 25 0 chr12 14427308 14427388 -129855101 + L1ME4a LINE L1 5967 6048 -73 582 202 69 35 chr12 14428895 14429068 -129853421 - MLT1E LTR MaLR -2 591 413 496 244 111 70 chr12 14429076 14429347 -129853142 - MLT1E LTR MaLR -260 282 1 229 262 84 65 chr12 14429409 14429516 -129852973 + L2 LINE L2 3163 3271 -1 644 263 140 47 chr12 14430691 14430991 -129851498 - MER102a DNA MER1_type -1 329 2 667 240 6 44 chr12 14431574 14431757 -129850732 + L2 LINE L2 3137 3312 -1 697 188 109 0 chr12 14432048 14432176 -129850313 - MER5A DNA MER1_type -47 142 1 571 191 15 73 chr12 14432946 14433097 -129849392 - MIR SINE MIR -21 241 101 300 222 14 0 chr12 14433400 14433472 -129849017 + MER113 DNA MER1_type? 2 74 -447 212 217 0 29 chr12 14433709 14433778 -129848711 + T-rich Low_complexity Low_complexity 5 71 0 447 35 0 0 chr12 14434186 14434243 -129848246 + (TG)n Simple_repeat Simple_repeat 1 57 0 224 200 0 55 chr12 14434280 14434335 -129848154 + CT-rich Low_complexity Low_complexity 2 53 0 368 261 37 52 chr12 14434577 14434711 -129847778 + MIR SINE MIR 9 141 -67 28 0 0 0 chr12 14435608 14435636 -129846853 + AT_rich Low_complexity Low_complexity 1 28 0 456 293 37 30 chr12 14436612 14436912 -129845577 + L1ME4a LINE L1 5744 6045 -76 192 231 0 19 chr12 14437902 14437954 -129844535 + L2 LINE L2 3262 3312 -1 217 123 37 49 chr12 14437998 14438079 -129844410 + G-rich Low_complexity Low_complexity 3 82 0 849 275 73 31 chr12 14438138 14438465 -129844024 - L3b LINE CR1 -92 1491 1151 194 217 72 96 chr12 14438694 14438777 -129843712 - L2 LINE L2 -18 3254 3174 201 300 44 22 chr12 14440255 14440345 -129842144 - MIR SINE MIR -6 256 165 416 310 101 45 chr12 14440809 14441077 -129841412 - L2 LINE L2 -1 3312 3030 364 298 57 8 chr12 14441210 14441334 -129841155 - MIR3 SINE MIR -9 199 70 286 268 54 18 chr12 14442002 14442114 -129840375 - L2 LINE L2 -2 3311 3196 241 284 60 35 chr12 14442491 14442607 -129839882 - L2 LINE L2 -573 2741 2623 1860 184 0 7 chr12 14443129 14443434 -129839055 + AluJo SINE Alu 1 303 -9 280 349 13 0 chr12 14443821 14443970 -129838519 + MER103 DNA DNA 2 152 -14 648 267 141 0 chr12 14444108 14444299 -129838190 - MIR SINE MIR -10 252 35 23 0 0 0 chr12 14445120 14445143 -129837346 + AT_rich Low_complexity Low_complexity 1 23 0 1838 97 8 0 chr12 14445153 14445412 -129837077 + L1PA10 LINE L1 5905 6165 -3 535 291 11 28 chr12 14445443 14445622 -129836867 + MIR SINE MIR 77 252 -10 661 299 74 66 chr12 14446585 14446963 -129835526 - L3 LINE CR1 -4 1573 1193 2315 163 70 9 chr12 14447026 14447456 -129835033 + LTR32 LTR ERVL 15 470 -1 207 281 126 37 chr12 14447552 14447687 -129834802 - L3 LINE CR1 -363 1214 1068 384 213 25 31 chr12 14448008 14448168 -129834321 + GA-rich Low_complexity Low_complexity 2 160 0 651 222 12 12 chr12 14448239 14448401 -129834088 + MARNA DNA Mariner 363 524 -62 197 214 170 71 chr12 14448856 14448968 -129833521 + MIR SINE MIR 69 191 -71 441 0 0 0 chr12 14449488 14449537 -129832952 + (TG)n Simple_repeat Simple_repeat 2 50 0 455 324 88 0 chr12 14449620 14449790 -129832699 - MIR3 SINE MIR -4 204 20 324 307 175 15 chr12 14450303 14450440 -129832049 - MIR3 SINE MIR -46 162 4 192 307 13 40 chr12 14450581 14450656 -129831833 + MIR SINE MIR 79 151 -57 305 229 42 10 chr12 14450758 14450854 -129831635 - L1MA9 LINE L1 -40 6272 6174 690 244 29 80 chr12 14452384 14452594 -129829895 + MIR SINE MIR 2 196 -66 903 119 0 182 chr12 14452594 14452830 -129829659 + 7SK RNA RNA 1 193 0 690 244 29 80 chr12 14452830 14452894 -129829595 + MIR SINE MIR 196 262 0 1737 177 92 13 chr12 14455867 14456257 -129826232 + MSTB1 LTR MaLR 12 432 0 254 306 157 39 chr12 14456326 14456663 -129825826 + L2 LINE L2 1974 2350 -964 208 200 158 84 chr12 14457035 14457130 -129825359 - MIR SINE MIR -12 250 149 217 341 23 23 chr12 14457267 14457355 -129825134 - MIR SINE MIR -171 91 4 391 190 0 38 chr12 14458362 14458441 -129824048 + MIR SINE MIR 187 262 0 338 61 20 0 chr12 14459332 14459381 -129823108 + (CA)n Simple_repeat Simple_repeat 1 50 0 198 0 0 0 chr12 14459425 14459447 -129823042 + (CA)n Simple_repeat Simple_repeat 1 22 0 23 68 0 0 chr12 14459496 14459540 -129822949 + AT_rich Low_complexity Low_complexity 1 44 0 3298 153 23 28 chr12 14461433 14461807 -129820682 + MER6A DNA MER2_type 1 372 -493 2440 90 3 0 chr12 14461807 14462119 -129820370 - AluSp SINE Alu 0 313 1 3298 153 23 28 chr12 14462119 14462352 -129820137 + MER6A DNA MER2_type 372 605 0 27 49 0 0 chr12 14462403 14462444 -129820045 + AT_rich Low_complexity Low_complexity 1 41 0 242 293 121 7 chr12 14462634 14462774 -129819715 - MER5B DNA MER1_type -19 159 4 246 233 83 0 chr12 14463408 14463468 -129819021 - L2 LINE L2 -5 3308 3244 415 245 64 28 chr12 14463527 14463670 -129818819 - MIR3 SINE MIR -46 162 12 423 0 0 0 chr12 14463708 14463755 -129818734 + (TA)n Simple_repeat Simple_repeat 2 48 0 2179 112 0 0 chr12 14467739 14468034 -129814455 - AluSx SINE Alu -17 295 1 2189 113 3 3 chr12 14468645 14468938 -129813551 - AluSg SINE Alu -17 293 1 415 221 14 114 chr12 14469443 14469583 -129812906 + MLT1G1 LTR MaLR 9 134 -421 705 302 133 7 chr12 14469595 14469896 -129812593 + MLT1G1 LTR MaLR 255 593 -2 1868 153 18 49 chr12 14469953 14470340 -129812149 - THE1C LTR MaLR 0 375 1 245 344 16 62 chr12 14470502 14470630 -129811859 - L2 LINE L2 -4 3268 3147 468 285 32 19 chr12 14471965 14472123 -129810366 + MER91B DNA MER1_type 19 178 -12 302 252 148 0 chr12 14472660 14472795 -129809694 - L1ME LINE L1 -295 5826 5672 425 235 22 44 chr12 14473748 14473884 -129808605 + MIR SINE MIR 130 262 0 195 254 36 18 chr12 14474168 14474223 -129808266 + L2 LINE L2 3201 3256 -16 765 322 70 23 chr12 14474788 14475173 -129807316 + L3b LINE CR1 1103 1505 -78 204 355 0 16 chr12 14475709 14475771 -129806718 + L2 LINE L2 3005 3065 -207 243 200 75 50 chr12 14477328 14477408 -129805081 - MIR SINE MIR -81 181 100 213 227 288 38 chr12 14477664 14477796 -129804693 - MIR SINE MIR -14 248 84 433 211 88 88 chr12 14477870 14478017 -129804472 - L2 LINE L2 -1 3312 3166 225 331 15 15 chr12 14478091 14478221 -129804268 + L1ME LINE L1 466 595 -5935 1160 230 61 18 chr12 14478265 14478657 -129803832 + L1ME LINE L1 1009 1417 -5123 288 234 11 53 chr12 14478665 14478759 -129803730 + LTR50 LTR ERVL 489 578 -217 2078 189 25 96 chr12 14478856 14479258 -129803231 + L1ME2 LINE L1 5523 5863 -301 11809 33 1 1 chr12 14479258 14481441 -129801048 + L1PA4 LINE L1 3968 6152 -3 2078 189 25 96 chr12 14481441 14481682 -129800807 + L1ME2 LINE L1 5863 6120 -44 496 224 0 42 chr12 14483786 14483929 -129798560 - L1PB4 LINE L1 0 6156 6020 228 212 15 30 chr12 14484126 14484192 -129798297 + (ATG)n Simple_repeat Simple_repeat 1 65 0 295 271 0 0 chr12 14484571 14484641 -129797848 + (TGAA)n Simple_repeat Simple_repeat 1 70 0 209 379 24 40 chr12 14485161 14485285 -129797204 + L2 LINE L2 3148 3269 -3 216 228 18 0 chr12 14485634 14485691 -129796798 + GA-rich Low_complexity Low_complexity 3 60 0 280 298 74 88 chr12 14486070 14486118 -129796371 - MIR SINE MIR -21 241 194 324 0 0 0 chr12 14486118 14486154 -129796335 + (TG)n Simple_repeat Simple_repeat 2 37 0 280 298 74 88 chr12 14486154 14486320 -129796169 - MIR SINE MIR -68 194 30 282 218 18 0 chr12 14486599 14486654 -129795835 + L2 LINE L2 3211 3266 -6 2569 319 125 41 chr12 14489881 14491837 -129790652 - L2 LINE L2 -5 3308 1178 1382 25 0 0 chr12 14492191 14492351 -129790138 - L1PA7 LINE L1 0 6154 5995 292 331 19 0 chr12 14493709 14493863 -129788626 + LTR16C LTR ERVL 286 442 -49 259 219 37 24 chr12 14494323 14494405 -129788084 + GA-rich Low_complexity Low_complexity 3 85 0 28 0 0 0 chr12 14495277 14495305 -129787184 + AT_rich Low_complexity Low_complexity 1 28 0 2219 112 10 0 chr12 14495305 14495599 -129786890 + AluSq SINE Alu 2 298 -15 275 65 22 0 chr12 14495599 14495645 -129786844 + (TA)n Simple_repeat Simple_repeat 1 47 0 1927 75 11 4 chr12 14495722 14495987 -129786502 - L1PB1 LINE L1 -1 6150 5884 431 221 24 144 chr12 14495992 14496200 -129786289 - MIR SINE MIR -64 198 16 418 352 90 7 chr12 14496197 14496342 -129786147 - MIR3 SINE MIR -36 172 16 * 308 311 133 15 chr12 14497076 14497211 -129785278 + L2 LINE L2 3122 3272 0 216 111 0 0 chr12 14497775 14497811 -129784678 + (TGGA)n Simple_repeat Simple_repeat 3 38 0 24 0 0 0 chr12 14499033 14499057 -129783432 + AT_rich Low_complexity Low_complexity 1 24 0 444 308 47 6 chr12 14499451 14499620 -129782869 - MIR SINE MIR -29 233 58 180 317 43 86 chr12 14499906 14500231 -129782258 + L2 LINE L2 1948 2258 -1056 2119 87 0 8 chr12 14500385 14500682 -129781807 + AluY SINE Alu 17 311 0 188 343 29 14 chr12 14501204 14501274 -129781215 - MIR SINE MIR -55 153 83 491 311 15 0 chr12 14501923 14502058 -129780431 - L2 LINE L2 0 3272 3136 360 336 24 28 chr12 14502080 14502291 -129780198 - L2 LINE L2 -767 2547 2338 190 341 23 34 chr12 14502844 14502932 -129779557 - L3 LINE CR1 -3 1574 1488 * 441 243 16 68 chr12 14502931 14503067 -129779422 - MIR SINE MIR -64 144 1 377 335 69 35 chr12 14503786 14503989 -129778500 - L2 LINE L2 -173 3099 2890 2193 98 16 32 chr12 14505794 14506110 -129776379 + AluSq SINE Alu 1 311 -2 2366 97 0 0 chr12 14506262 14506562 -129775927 - AluY SINE Alu -11 300 1 490 266 0 73 chr12 14507812 14508004 -129774485 + MER5B DNA MER1_type 1 178 0 2384 82 23 0 chr12 14508150 14508454 -129774035 + AluSp SINE Alu 1 311 -2 194 191 88 73 chr12 14509106 14509174 -129773315 - L3 LINE CR1 -1135 442 374 189 0 0 0 chr12 14510090 14510111 -129772378 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 2040 83 41 8 chr12 14510113 14510379 -129772110 - AluSg1 SINE Alu -32 277 3 1606 163 53 23 chr12 14510595 14510896 -129771593 - AluJb SINE Alu 0 312 3 2181 134 0 0 chr12 14511483 14511782 -129770707 - AluSx SINE Alu -13 299 1 915 259 92 45 chr12 14511782 14512118 -129770371 + MLT1J LTR MaLR 58 409 -102 302 283 38 94 chr12 14514563 14514775 -129767714 + MIR3 SINE MIR 3 202 -6 646 209 121 70 chr12 14514961 14515234 -129767255 - L2 LINE L2 -5 3308 3022 2418 152 49 2 chr12 14515679 14516087 -129766402 + MSTB1 LTR MaLR 1 427 -5 252 338 0 0 chr12 14516119 14516196 -129766293 + GA-rich Low_complexity Low_complexity 2 78 0 936 128 43 32 chr12 14517845 14518032 -129764457 + MER53 DNA DNA 1 189 0 203 323 71 10 chr12 14519822 14519921 -129762568 - L2 LINE L2 -32 3281 3177 849 363 100 26 chr12 14520133 14521012 -129761477 - L2 LINE L2 -341 2973 2030 21 0 0 0 chr12 14521232 14521253 -129761236 + AT_rich Low_complexity Low_complexity 1 21 0 306 250 36 79 chr12 14521439 14521579 -129760910 + HAL1b LINE L1 1193 1326 -22 592 313 39 10 chr12 14521983 14522191 -129760298 + MIR SINE MIR 46 259 -3 26 0 0 0 chr12 14523107 14523133 -129759356 + AT_rich Low_complexity Low_complexity 1 26 0 673 204 36 7 chr12 14523236 14523373 -129759116 - MER46C DNA MER2_type -118 220 80 234 240 0 0 chr12 14523373 14523423 -129759066 + (CA)n Simple_repeat Simple_repeat 2 51 0 1509 196 65 3 chr12 14524790 14525081 -129757408 + MLT1A1 LTR MaLR 3 311 -54 2147 89 4 0 chr12 14525091 14525361 -129757128 - AluSg1 SINE Alu -34 275 5 275 175 211 0 chr12 14525365 14525422 -129757067 + MLT1A1 LTR MaLR 297 365 0 1100 333 25 7 chr12 14526992 14527395 -129755094 + LTR16A LTR ERVL 33 442 -8 645 309 80 34 chr12 14527423 14527747 -129754742 + L3 LINE CR1 1216 1554 -23 2355 100 0 10 chr12 14528050 14528360 -129754129 - AluSc SINE Alu -2 307 1 729 242 61 9 chr12 14528501 14528732 -129753757 + L2 LINE L2 1748 1990 -1324 889 254 107 70 chr12 14528732 14529380 -129753109 + L2 LINE L2 2617 3299 -14 2348 88 0 0 chr12 14531060 14531354 -129751135 - AluY SINE Alu -17 294 1 405 281 31 119 chr12 14534370 14534697 -129747792 - L3b LINE CR1 -118 1465 1168 295 312 129 6 chr12 14534699 14534869 -129747620 - MIR SINE MIR -9 253 63 189 162 0 0 chr12 14534927 14534964 -129747525 - L3b LINE CR1 -424 1159 1123 214 298 94 47 chr12 14535634 14535805 -129746684 - L3 LINE CR1 -1134 443 265 2322 62 3 13 chr12 14536026 14536331 -129746158 + AluY SINE Alu 1 302 -9 2262 82 3 0 chr12 14537805 14538114 -129744375 + AluY SINE Alu 1 310 0 629 40 0 0 chr12 14539734 14539810 -129742679 - L1PA8A LINE L1 -142 5989 5914 232 186 0 23 chr12 14539807 14539850 -129742639 + L1PA8A LINE L1 5853 5894 -260 * 2659 127 6 0 chr12 14540048 14540410 -129742079 + THE1B LTR MaLR 1 364 0 523 317 79 5 chr12 14540541 14540743 -129741746 + MIR SINE MIR 20 236 -26 255 140 0 0 chr12 14544031 14544081 -129738408 + (ATG)n Simple_repeat Simple_repeat 2 51 0 465 304 121 19 chr12 14544345 14544552 -129737937 + MIR SINE MIR 22 249 -13 314 315 127 5 chr12 14544709 14544907 -129737582 - L1MC/D LINE L1 -637 5484 5341 4420 95 31 0 chr12 14544911 14545492 -129736997 + L1PA11 LINE L1 5576 6174 0 21 36 0 0 chr12 14545906 14545934 -129736555 + AT_rich Low_complexity Low_complexity 1 28 0 2154 114 17 0 chr12 14548097 14548395 -129734094 - AluSx SINE Alu -9 303 1 1464 204 32 3 chr12 14548487 14548800 -129733689 - MER33 DNA MER1_type -2 322 1 546 273 137 19 chr12 14548801 14549006 -129733483 + MIR SINE MIR 34 262 0 955 326 176 30 chr12 14550054 14550959 -129731530 + L3 LINE CR1 436 1558 -19 210 184 0 20 chr12 14551349 14551398 -129731091 + CT-rich Low_complexity Low_complexity 2 49 0 225 0 0 0 chr12 14552483 14552508 -129729981 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2662 55 0 3 chr12 14552993 14553305 -129729184 + AluY SINE Alu 1 311 0 188 406 16 0 chr12 14553321 14553385 -129729104 + L2 LINE L2 3115 3179 -93 1954 200 56 70 chr12 14553543 14554059 -129728430 + MLT1H LTR MaLR 41 549 0 195 346 74 56 chr12 14554287 14554625 -129727864 + L2 LINE L2 2627 2970 -344 401 243 54 127 chr12 14554705 14554964 -129727525 - MIR SINE MIR 0 262 23 292 274 44 53 chr12 14555009 14555122 -129727367 - MIR SINE MIR -81 127 16 233 297 59 20 chr12 14557527 14557628 -129724861 - MIR3 SINE MIR -6 202 98 390 316 23 18 chr12 14558616 14558787 -129723702 + MIR SINE MIR 91 262 0 2308 51 44 7 chr12 14560233 14560527 -129721962 + AluY SINE Alu 1 305 -6 1651 211 52 0 chr12 14560738 14561146 -129721343 - L1MA4 LINE L1 -5 6295 5867 2009 113 0 52 chr12 14562176 14562485 -129720004 + AluSg SINE Alu 1 293 -17 1696 157 44 63 chr12 14562971 14563353 -129719136 + AluJb SINE Alu 1 376 0 361 291 38 51 chr12 14564498 14564598 -129717891 + MIR SINE MIR 103 202 -60 4276 66 2 0 chr12 14564598 14565146 -129717343 + L1PA6 LINE L1 5606 6154 0 361 291 38 51 chr12 14565146 14565203 -129717286 + MIR SINE MIR 202 258 -4 533 296 62 6 chr12 14565795 14565957 -129716532 - MIR3 SINE MIR -24 184 14 2126 136 48 11 chr12 14566097 14566449 -129716040 - MLT1A1 LTR MaLR 0 365 1 187 331 48 48 chr12 14567003 14567127 -129715362 + MER5A DNA MER1_type 43 166 -23 * 380 257 14 0 chr12 14567078 14567152 -129715337 - MER5A DNA MER1_type -105 84 10 284 344 62 20 chr12 14567437 14567632 -129714857 + MIR SINE MIR 59 261 -1 220 316 26 13 chr12 14569469 14569545 -129712944 - L3 LINE CR1 -402 1175 1099 221 338 120 23 chr12 14571045 14571178 -129711311 - L2 LINE L2 0 3313 3168 482 347 11 4 chr12 14571382 14571644 -129710845 + L1ME LINE L1 5509 5772 -349 21 36 0 0 chr12 14571721 14571749 -129710740 + AT_rich Low_complexity Low_complexity 1 28 0 2622 135 7 27 chr12 14571942 14572385 -129710104 + Tigger2a DNA MER2_type 1 434 0 383 319 212 8 chr12 14573647 14573888 -129708601 + L2 LINE L2 3021 3310 -3 269 293 20 50 chr12 14574208 14574307 -129708182 - MIR SINE MIR -93 169 74 5748 139 23 6 chr12 14574649 14575961 -129706528 - L1MA8 LINE L1 0 6291 4960 220 324 0 0 chr12 14576238 14576309 -129706180 + MIR3 SINE MIR 138 208 0 234 0 0 0 chr12 14576761 14576787 -129705702 + (T)n Simple_repeat Simple_repeat 1 26 0 579 15 0 0 chr12 14577503 14577570 -129704919 - L1PA5 LINE L1 -263 5891 5825 1898 51 0 0 chr12 14577570 14577804 -129704685 + L1PA5 LINE L1 5917 6150 -4 204 40 0 0 chr12 14577804 14577829 -129704660 + (TA)n Simple_repeat Simple_repeat 1 25 0 794 198 171 0 chr12 14578063 14578250 -129704239 - MER20 DNA MER1_type 0 219 1 314 322 101 35 chr12 14578349 14578576 -129703913 + MIR SINE MIR 20 261 -1 361 308 148 38 chr12 14578790 14579255 -129703234 + L2 LINE L2 2607 3135 -178 979 119 0 0 chr12 14579271 14579405 -129703084 - AluSg/x SINE Alu -16 296 163 284 274 169 8 chr12 14579428 14579552 -129702937 + L2 LINE L2 3167 3310 -3 231 343 57 29 chr12 14579699 14579804 -129702685 + L2 LINE L2 3125 3232 -40 1428 176 13 83 chr12 14580328 14580630 -129701859 + AluJo SINE Alu 1 281 -31 2218 89 13 20 chr12 14581982 14582286 -129700203 - AluSg SINE Alu -8 302 1 358 254 246 0 chr12 14582579 14582721 -129699768 - MIR SINE MIR 0 262 86 1092 169 9 28 chr12 14583695 14583908 -129698581 + MER3 DNA MER1_type 1 209 0 251 200 31 15 chr12 14584079 14584144 -129698345 - MER116 DNA Mariner -12 68 3 202 224 20 0 chr12 14584221 14584270 -129698219 + (TGAA)n Simple_repeat Simple_repeat 2 51 0 1823 168 33 48 chr12 14588024 14588418 -129694071 + MLT1B LTR MaLR 3 390 0 809 273 3 72 chr12 14588541 14588889 -129693600 - MER46C DNA MER2_type -14 324 1 381 276 48 0 chr12 14589426 14589531 -129692958 - L2 LINE L2 -4 3309 3200 246 331 121 16 chr12 14589614 14589738 -129692751 + L2 LINE L2 3136 3272 0 427 322 64 75 chr12 14589816 14590339 -129692150 + L2 LINE L2 2563 3089 -183 219 287 46 58 chr12 14590740 14590827 -129691662 - L2 LINE L2 -39 3233 3148 6471 241 55 24 chr12 14591928 14593624 -129688865 - L1MEc LINE L1 -1182 5033 3248 2536 65 0 10 chr12 14593624 14593930 -129688559 + AluSg SINE Alu 1 303 -7 6471 241 55 24 chr12 14593930 14594501 -129687988 - L1MEc LINE L1 -2967 3248 2696 238 26 51 0 chr12 14594507 14594546 -129687943 + (TA)n Simple_repeat Simple_repeat 2 42 0 339 25 0 0 chr12 14594548 14594588 -129687901 + (TG)n Simple_repeat Simple_repeat 1 40 0 2079 114 0 0 chr12 14594588 14594868 -129687621 - AluSq SINE Alu -33 280 1 1400 253 91 112 chr12 14594874 14595240 -129687249 - L1MEc LINE L1 -4009 2387 2015 2244 108 7 0 chr12 14595240 14595535 -129686954 + AluSp SINE Alu 1 297 -16 1400 253 91 112 chr12 14595535 14596751 -129685738 - L1MEc LINE L1 -4381 2015 868 2154 104 0 0 chr12 14596751 14597031 -129685458 - AluSg SINE Alu -30 280 1 1400 253 91 112 chr12 14597031 14597847 -129684642 - L1MEc LINE L1 -5528 868 37 780 297 99 37 chr12 14597872 14598441 -129684048 + L2 LINE L2 2709 3305 -8 2295 136 64 33 chr12 14599943 14600362 -129682127 + MSTB1 LTR MaLR 1 432 0 470 250 83 0 chr12 14601514 14601622 -129680867 + L2 LINE L2 3146 3262 -10 744 251 116 13 chr12 14601623 14602002 -129680487 - L1ME4a LINE L1 -219 5902 5485 290 243 63 36 chr12 14602786 14602897 -129679592 - MIR SINE MIR -62 146 33 2338 85 0 22 chr12 14603072 14603388 -129679101 - AluY SINE Alu -2 309 1 812 214 17 17 chr12 14603846 14604024 -129678465 + MER5B DNA MER1_type 1 178 0 231 36 0 0 chr12 14604823 14604851 -129677638 + (A)n Simple_repeat Simple_repeat 1 28 0 341 242 150 17 chr12 14606611 14606731 -129675758 - MIR SINE MIR -112 150 15 383 260 4 13 chr12 14608614 14608723 -129673766 - MIR SINE MIR -61 147 44 451 280 48 0 chr12 14609483 14609608 -129672881 + MIR SINE MIR 45 175 -87 400 290 66 2 chr12 14610235 14610372 -129672117 - MIR SINE MIR -63 145 3 193 217 188 14 chr12 14611837 14611906 -129670583 + MIR SINE MIR 175 255 -7 231 36 0 0 chr12 14611963 14611991 -129670498 + (T)n Simple_repeat Simple_repeat 1 28 0 327 106 0 188 chr12 14612045 14612078 -129670411 - L1PA10 LINE L1 0 6168 6159 260 27 27 0 chr12 14612078 14612115 -129670374 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 327 106 0 188 chr12 14612115 14612166 -129670323 - L1PA10 LINE L1 -9 6159 6100 230 93 0 23 chr12 14612272 14612315 -129670174 + (CA)n Simple_repeat Simple_repeat 1 42 0 31 26 0 0 chr12 14612432 14612470 -129670019 + AT_rich Low_complexity Low_complexity 1 38 0 283 342 34 2 chr12 14613665 14613795 -129668694 + MIR SINE MIR 25 123 -85 561 224 35 0 chr12 14614634 14614750 -129667739 + MIR3 SINE MIR 85 204 -4 394 292 66 51 chr12 14615132 14615269 -129667220 - MIR3 SINE MIR -55 153 15 23 0 0 0 chr12 14615384 14615407 -129667082 + AT_rich Low_complexity Low_complexity 1 23 0 373 250 71 9 chr12 14616047 14616159 -129666330 - MIR SINE MIR -105 157 39 247 206 0 41 chr12 14616191 14616264 -129666225 + L1MD2 LINE L1 6289 6358 -1 218 354 7 14 chr12 14616663 14616810 -129665679 + GA-rich Low_complexity Low_complexity 2 147 0 369 280 80 40 chr12 14619836 14620036 -129662453 + MIR SINE MIR 3 210 -52 235 374 0 11 chr12 14620553 14620644 -129661845 + MER5B DNA MER1_type 37 126 -52 282 303 82 62 chr12 14621623 14621867 -129660622 - MIR SINE MIR -12 250 2 778 278 155 30 chr12 14621984 14622383 -129660106 + L2 LINE L2 2863 3311 -2 459 308 31 15 chr12 14622906 14623036 -129659453 - L2 LINE L2 0 3272 3141 1984 157 0 0 chr12 14623282 14623588 -129658901 + AluSg SINE Alu 2 307 -3 1960 142 6 25 chr12 14623980 14624298 -129658191 + AluSx SINE Alu 1 312 0 517 250 37 15 chr12 14624327 14624463 -129658026 - MIR SINE MIR -107 155 17 1238 208 124 44 chr12 14624472 14624900 -129657589 - MLT1C LTR MaLR 0 467 6 346 346 112 32 chr12 14624963 14625507 -129656982 - L2 LINE L2 -35 3237 2643 525 324 21 28 chr12 14625685 14625972 -129656517 + L2 LINE L2 2034 2318 -996 250 265 110 31 chr12 14626078 14626302 -129656187 - L2 LINE L2 -1331 1983 1665 247 371 0 21 chr12 14626325 14626421 -129656068 - MER20B DNA MER1_type -604 179 85 300 70 0 0 chr12 14626421 14626464 -129656025 + (CA)n Simple_repeat Simple_repeat 1 43 0 247 371 0 21 chr12 14626464 14626507 -129655982 - MER20B DNA MER1_type -698 85 43 302 333 33 0 chr12 14627136 14627256 -129655233 + MIR SINE MIR 91 214 -48 381 363 144 0 chr12 14628079 14628280 -129654209 - MIR SINE MIR -12 250 21 435 320 26 13 chr12 14628701 14628854 -129653635 + MIR SINE MIR 34 188 -74 2147 119 16 0 chr12 14629372 14629675 -129652814 - AluSx SINE Alu -4 308 1 272 337 35 13 chr12 14630267 14630385 -129652104 + MIR SINE MIR 2 119 -89 429 287 94 17 chr12 14630970 14631151 -129651338 - MIR SINE MIR -50 212 18 183 42 0 0 chr12 14631716 14631740 -129650749 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 747 280 37 18 chr12 14632482 14632700 -129649789 + MIR SINE MIR 21 242 -20 847 148 94 0 chr12 14633845 14633994 -129648495 + MER5B DNA MER1_type 1 163 -15 2234 117 0 0 chr12 14634407 14634707 -129647782 + AluSq SINE Alu 7 306 -7 259 313 44 73 chr12 14635890 14636078 -129646411 - MIR SINE MIR -65 197 23 627 157 0 26 chr12 14636499 14636614 -129645875 + L1PB4 LINE L1 6043 6154 -2 362 356 38 6 chr12 14636618 14636778 -129645711 - MIR SINE MIR -12 250 86 225 0 0 0 chr12 14637507 14637532 -129644957 + (CA)n Simple_repeat Simple_repeat 2 26 0 297 75 0 0 chr12 14638270 14638310 -129644179 + (T)n Simple_repeat Simple_repeat 1 40 0 417 103 147 0 chr12 14638493 14638561 -129643928 + MER116 DNA Mariner 1 78 -2 497 286 120 26 chr12 14638566 14638758 -129643731 - MIR SINE MIR -33 229 20 231 36 0 0 chr12 14638792 14638820 -129643669 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 298 233 111 89 chr12 14638832 14639012 -129643477 + MIR SINE MIR 37 220 -42 302 269 0 43 chr12 14639895 14639988 -129642501 + L1ME LINE L1 5507 5595 -526 228 244 117 44 chr12 14639987 14640167 -129642322 + L1M4 LINE L1 2335 2527 -3619 * 676 263 183 44 chr12 14640267 14640856 -129641633 + L1M4 LINE L1 2676 3359 -2787 1264 122 0 6 chr12 14641271 14641522 -129640967 + AluSc SINE Alu 2 295 -14 369 243 39 25 chr12 14641538 14641733 -129640756 + L1M4 LINE L1 3765 3955 -2191 408 283 97 27 chr12 14641838 14642096 -129640393 + L1M4 LINE L1 4411 4686 -1460 22 35 0 0 chr12 14642176 14642205 -129640284 + AT_rich Low_complexity Low_complexity 1 29 0 1256 111 5 15 chr12 14644014 14644212 -129638277 - L1PA11 LINE L1 -60 6114 5919 616 40 0 0 chr12 14644212 14644284 -129638205 + L1PA11 LINE L1 6100 6173 -1 2341 87 0 10 chr12 14644295 14644604 -129637885 + AluSc SINE Alu 1 306 -3 249 322 116 10 chr12 14644742 14644903 -129637586 + MIR SINE MIR 20 203 -59 * 265 308 68 38 chr12 14644886 14645019 -129637470 - L2 LINE L2 -4 3309 3173 434 282 72 36 chr12 14645196 14645391 -129637098 + MIR SINE MIR 21 222 -40 330 253 81 50 chr12 14645852 14645951 -129636538 + L2 LINE L2 3171 3272 0 306 313 263 19 chr12 14646639 14646799 -129635690 + MIR3 SINE MIR 3 201 -7 1169 287 39 48 chr12 14646801 14646832 -129635657 + LTR33 LTR ERVL 12 42 -479 2301 107 0 3 chr12 14646832 14647140 -129635349 + AluSx SINE Alu 1 307 -5 1169 287 39 48 chr12 14647140 14647623 -129634866 + LTR33 LTR ERVL 42 521 0 1902 164 7 0 chr12 14648156 14648454 -129634035 - MER7A DNA MER2_type 0 346 49 192 77 0 0 chr12 14650046 14650072 -129632417 + (TG)n Simple_repeat Simple_repeat 1 26 0 354 271 53 30 chr12 14651559 14651692 -129630797 + MIR SINE MIR 81 216 -46 3148 212 85 48 chr12 14651814 14653397 -129629092 - L1ME1 LINE L1 -5 6161 4535 1491 219 104 15 chr12 14653399 14653860 -129628629 - L1ME1 LINE L1 -1709 4437 3936 409 366 27 11 chr12 14654901 14655087 -129627402 + MER5A DNA MER1_type 1 189 0 245 232 285 20 chr12 14655174 14655325 -129627164 - MER112 DNA MER1_type -66 194 4 995 235 24 36 chr12 14655896 14656147 -129626342 - MIR SINE MIR -10 252 5 3630 131 75 82 chr12 14657206 14657503 -129624986 - Tigger3(Golem) DNA MER2_type 0 3029 2732 2218 114 0 0 chr12 14657503 14657800 -129624689 + AluSx SINE Alu 1 297 -15 3630 131 75 82 chr12 14657800 14658259 -129624230 - Tigger3(Golem) DNA MER2_type -297 2732 2278 615 119 0 136 chr12 14658247 14658365 -129624124 - Tigger3(Golem) DNA MER2_type -2918 111 10 * 262 244 158 24 chr12 14658519 14658646 -129623843 - MIR SINE MIR -21 241 98 207 171 0 0 chr12 14660817 14660852 -129621637 + (CACCAT)n Simple_repeat Simple_repeat 1 35 0 202 258 150 33 chr12 14660913 14661033 -129621456 - L2 LINE L2 -8 3305 3172 * 218 345 0 12 chr12 14661024 14661165 -129621324 - MIR SINE MIR -3 259 53 21 36 0 0 chr12 14661430 14661458 -129621031 + AT_rich Low_complexity Low_complexity 1 28 0 1145 267 46 20 chr12 14662971 14663709 -129618780 + L1ME4a LINE L1 5330 6119 -2 444 257 21 86 chr12 14664150 14664290 -129618199 - MIR3 SINE MIR -16 192 62 796 241 41 20 chr12 14665869 14666064 -129616425 + MIR SINE MIR 63 261 -1 432 302 16 8 chr12 14666645 14666771 -129615718 + MIR3 SINE MIR 75 201 -7 217 140 20 40 chr12 14666811 14666861 -129615628 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 398 65 0 16 chr12 14666988 14667087 -129615402 + L1PA2 LINE L1 6089 6155 0 435 232 27 19 chr12 14667332 14667520 -129614969 - MIR SINE MIR 0 262 14 2224 95 14 0 chr12 14667681 14667965 -129614524 + AluSp SINE Alu 1 288 -25 225 132 0 0 chr12 14667982 14668020 -129614469 + (CTA)n Simple_repeat Simple_repeat 3 40 0 221 283 87 22 chr12 14668078 14668170 -129614319 - MIR SINE MIR -116 146 49 189 0 0 0 chr12 14668291 14668312 -129614177 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 2219 104 0 3 chr12 14669243 14669540 -129612949 + AluSp SINE Alu 1 296 -17 975 274 117 45 chr12 14669788 14670431 -129612058 - L1ME3A LINE L1 -225 6014 5326 589 172 55 7 chr12 14670522 14670667 -129611822 + MER3 DNA MER1_type 53 204 -5 704 283 91 20 chr12 14670678 14671138 -129611351 - L1ME3A LINE L1 -886 5329 4837 493 332 75 12 chr12 14671189 14671442 -129611047 - L1ME3A LINE L1 -1381 4834 4566 921 291 67 37 chr12 14671535 14671581 -129610908 - L1ME3A LINE L1 -2531 3684 3641 2109 125 3 0 chr12 14671581 14671877 -129610612 + AluSq SINE Alu 2 298 -15 921 291 67 37 chr12 14671877 14672818 -129609671 - L1ME3A LINE L1 -2574 3641 2668 371 284 128 30 chr12 14673000 14673960 -129608529 - L1ME3A LINE L1 -3786 2429 1409 303 269 0 106 chr12 14674044 14674185 -129608304 - L1M4 LINE L1 -3617 2529 2404 340 239 65 45 chr12 14674294 14674449 -129608040 - L1ME3A LINE L1 -5067 1138 981 304 327 19 0 chr12 14674685 14674789 -129607700 - L1ME3A LINE L1 -5480 725 620 28 61 0 0 chr12 14675857 14675906 -129606583 + AT_rich Low_complexity Low_complexity 1 49 0 1083 203 21 57 chr12 14676202 14676260 -129606229 + L1ME3 LINE L1 5834 5893 -269 2004 146 3 7 chr12 14676260 14676562 -129605927 + AluSx SINE Alu 1 301 -11 1083 203 21 57 chr12 14676562 14676838 -129605651 + L1ME3 LINE L1 5893 6156 -6 509 312 24 18 chr12 14677462 14677632 -129604857 - MIR SINE MIR -83 179 9 671 287 116 7 chr12 14677634 14677944 -129604545 - L3 LINE CR1 -194 1383 1040 358 353 29 58 chr12 14679575 14679887 -129602602 + L2 LINE L2 2554 2856 -458 239 321 71 12 chr12 14680162 14680246 -129602243 + L2 LINE L2 3176 3264 -49 295 282 68 10 chr12 14681753 14681856 -129600633 + MIR SINE MIR 102 210 -52 237 276 13 0 chr12 14682534 14682610 -129599879 + MIR SINE MIR 68 144 -64 891 237 0 5 chr12 14682851 14683045 -129599444 + MIR SINE MIR 70 262 0 4523 169 30 5 chr12 14683388 14684245 -129598244 + L1MA4 LINE L1 5408 6286 -14 827 207 61 5 chr12 14684579 14684777 -129597712 + MER3 DNA MER1_type 1 209 0 769 145 8 0 chr12 14685618 14685735 -129596754 + FLAM_C SINE Alu 1 118 -15 237 132 0 0 chr12 14685749 14685787 -129596702 + (CA)n Simple_repeat Simple_repeat 1 38 0 207 0 0 0 chr12 14685789 14685812 -129596677 + (TG)n Simple_repeat Simple_repeat 2 24 0 262 303 27 65 chr12 14685921 14686106 -129596383 - L2 LINE L2 -181 3091 2914 216 0 0 0 chr12 14686941 14686965 -129595524 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 362 301 46 75 chr12 14687115 14687288 -129595201 + MIR SINE MIR 20 187 -75 997 189 6 0 chr12 14687304 14687468 -129595021 + FRAM SINE Alu 1 158 -18 930 143 0 0 chr12 14689169 14689302 -129593187 + FLAM_A SINE Alu 1 133 0 321 127 152 51 chr12 14689888 14689967 -129592522 + LTR33A LTR ERVL 437 523 0 1955 145 0 26 chr12 14690168 14690478 -129592011 + AluSx SINE Alu 3 304 -8 225 211 78 125 chr12 14690781 14690909 -129591580 + L2 LINE L2 3188 3309 -4 443 285 31 57 chr12 14690994 14691187 -129591302 + MIR SINE MIR 74 261 -1 230 311 46 61 chr12 14691758 14691954 -129590535 + MLT1K LTR MaLR 2 194 -394 1313 243 87 23 chr12 14693281 14693763 -129588726 - LTR33 LTR ERVL -1 520 8 2382 81 3 0 chr12 14695723 14696031 -129586458 + AluY SINE Alu 1 309 -2 1221 168 5 28 chr12 14696421 14696635 -129585854 - MER58A DNA MER1_type -15 209 1 1984 132 0 42 chr12 14696723 14697034 -129585455 + AluJb SINE Alu 1 298 -14 2134 116 31 0 chr12 14697081 14697374 -129585115 + AluSx SINE Alu 1 302 -10 708 307 56 0 chr12 14697949 14698180 -129584309 - MIR SINE MIR 0 262 19 327 330 79 60 chr12 14698182 14698449 -129584040 + L3 LINE CR1 71 342 -1235 350 273 31 103 chr12 14698734 14698928 -129583561 + MIR SINE MIR 39 218 -44 2047 117 0 4 chr12 14698955 14699266 -129583223 + AluSc SINE Alu 1 310 0 438 325 30 18 chr12 14699308 14699474 -129583015 + L3 LINE CR1 373 540 -1037 710 294 126 68 chr12 14699708 14700137 -129582352 + L3 LINE CR1 642 1095 -482 26 30 0 0 chr12 14700176 14700209 -129582280 + AT_rich Low_complexity Low_complexity 1 33 0 2083 316 119 14 chr12 14700288 14701564 -129580925 + L2 LINE L2 1868 3299 -14 474 49 0 0 chr12 14702004 14702065 -129580424 + (TG)n Simple_repeat Simple_repeat 1 61 0 803 221 19 37 chr12 14702068 14702339 -129580150 + LTR33 LTR ERVL 256 521 0 209 320 41 57 chr12 14703057 14703179 -129579310 + L2 LINE L2 3184 3303 -10 406 283 12 57 chr12 14703419 14703636 -129578853 - MIR SINE MIR -56 206 3 865 300 12 4 chr12 14704547 14704790 -129577699 + MIR SINE MIR 18 262 0 626 298 54 30 chr12 14704796 14705128 -129577361 + L1MEc LINE L1 190 529 -6034 608 239 127 80 chr12 14705629 14706030 -129576459 + L1MEc LINE L1 851 1270 -5102 436 258 114 90 chr12 14706158 14706647 -129575842 + L1MEc LINE L1 1192 1840 -4692 436 293 46 36 chr12 14706655 14706935 -129575554 + L1MEc LINE L1 1889 2171 -4392 955 260 34 22 chr12 14706983 14707429 -129575060 + L1MEc LINE L1 2116 2566 -3997 1178 203 141 30 chr12 14707439 14707808 -129574681 + L1ME1 LINE L1 5606 6015 -149 234 128 0 0 chr12 14707808 14707847 -129574642 + MER3 DNA MER1_type 11 49 -160 253 214 55 0 chr12 14707868 14707949 -129574540 + L1ME1 LINE L1 6074 6161 -5 1734 159 19 12 chr12 14708275 14708595 -129573894 + MSTB LTR MaLR 1 322 -104 1344 153 36 14 chr12 14708595 14708818 -129573671 - AluJb SINE Alu -1 311 84 627 62 115 0 chr12 14708822 14708918 -129573571 + MSTB1 LTR MaLR 326 432 0 225 94 0 0 chr12 14709490 14709522 -129572967 + (CA)n Simple_repeat Simple_repeat 1 32 0 198 0 0 0 chr12 14710119 14710141 -129572348 + (CA)n Simple_repeat Simple_repeat 1 22 0 183 258 106 0 chr12 14711838 14711904 -129570585 - L2 LINE L2 -2 3311 3239 451 277 26 19 chr12 14712227 14712382 -129570107 - MIR SINE MIR -71 191 36 1352 281 48 9 chr12 14712462 14713048 -129569441 + L2 LINE L2 2709 3313 0 350 274 128 12 chr12 14713625 14713789 -129568700 - MIR SINE MIR -52 210 28 1931 188 59 48 chr12 14715196 14715786 -129566703 - Charlie2 DNA MER1_type -5 2857 2261 1148 244 109 6 chr12 14715905 14716225 -129566264 - Charlie2 DNA MER1_type -2499 363 11 666 297 57 8 chr12 14719371 14719617 -129562872 + MIR SINE MIR 5 262 0 848 119 91 40 chr12 14720123 14720299 -129562190 - MER53 DNA DNA -4 185 1 203 416 0 0 chr12 14720746 14720823 -129561666 + L2 LINE L2 3117 3193 -79 311 175 66 58 chr12 14721772 14721909 -129560580 + Charlie7 DNA MER1_type 2401 2538 -74 1825 231 126 15 chr12 14721923 14722489 -129560000 - MLT1G LTR MaLR -2 588 5 305 335 40 44 chr12 14722511 14722762 -129559727 + LTR33 LTR ERVL 30 279 -242 366 261 39 28 chr12 14722792 14722972 -129559517 + LTR33A LTR ERVL 328 509 -14 231 291 234 0 chr12 14723074 14723215 -129559274 + MIR3 SINE MIR 30 203 -5 1997 118 11 7 chr12 14723601 14723881 -129558608 + AluSx SINE Alu 23 303 -9 21 0 0 0 chr12 14724186 14724207 -129558282 + AT_rich Low_complexity Low_complexity 1 21 0 261 164 0 119 chr12 14727016 14727083 -129555406 + MER3 DNA MER1_type 146 204 -5 * 557 183 0 0 chr12 14727042 14727135 -129555354 - MER3 DNA MER1_type -116 93 1 366 195 0 0 chr12 14727742 14727829 -129554660 + CT-rich Low_complexity Low_complexity 1 87 0 258 105 0 0 chr12 14728799 14728837 -129553652 + (T)n Simple_repeat Simple_repeat 1 38 0 718 253 103 0 chr12 14729064 14729258 -129553231 - MER20 DNA MER1_type -2 217 4 571 294 65 20 chr12 14729269 14729517 -129552972 - MIR SINE MIR -2 260 2 282 250 0 15 chr12 14730968 14731036 -129551453 + MER5B DNA MER1_type 2 68 -110 309 51 0 0 chr12 14731134 14731173 -129551316 + (CA)n Simple_repeat Simple_repeat 1 39 0 262 271 203 28 chr12 14732599 14732776 -129549713 - MIR SINE MIR -45 217 10 215 307 165 24 chr12 14734337 14734464 -129548025 - L3 LINE CR1 -1340 237 93 221 0 35 0 chr12 14734603 14734632 -129547857 + (CA)n Simple_repeat Simple_repeat 2 31 0 267 276 0 136 chr12 14735077 14735276 -129547213 + MIR SINE MIR 20 191 -71 458 306 111 14 chr12 14735784 14736000 -129546489 - MIR SINE MIR -4 258 22 553 253 99 5 chr12 14736412 14736614 -129545875 + MIR SINE MIR 5 225 -37 205 331 149 37 chr12 14736639 14736935 -129545554 - L2 LINE L2 -18 3254 2926 260 244 47 23 chr12 14737468 14737554 -129544935 - MIR SINE MIR -117 145 58 219 283 224 33 chr12 14738403 14738555 -129543934 + MIR SINE MIR 20 200 -62 1736 108 0 0 chr12 14738943 14739166 -129543323 - AluSg SINE Alu -51 259 37 184 384 0 20 chr12 14739185 14739284 -129543205 - L2 LINE L2 -213 3059 2963 233 295 63 32 chr12 14739555 14739650 -129542839 - L2 LINE L2 -11 3261 3164 22 0 0 0 chr12 14739651 14739673 -129542816 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr12 14739738 14739777 -129542712 + (CA)n Simple_repeat Simple_repeat 2 40 0 387 304 8 8 chr12 14741129 14741254 -129541235 - MER5B DNA MER1_type 0 178 54 180 163 0 0 chr12 14741264 14741307 -129541182 + T-rich Low_complexity Low_complexity 4 46 0 231 352 32 0 chr12 14743586 14743711 -129538778 + L2 LINE L2 2933 3061 -211 207 288 0 40 chr12 14743887 14744012 -129538477 + A-rich Low_complexity Low_complexity 4 123 0 398 265 204 0 chr12 14744270 14744417 -129538072 + MER5A DNA MER1_type 13 189 0 384 314 42 0 chr12 14744499 14744617 -129537872 + MIR3 SINE MIR 81 203 -5 389 344 39 30 chr12 14744704 14744934 -129537555 - L2 LINE L2 -1 3271 3040 245 169 17 0 chr12 14749658 14749717 -129532772 + GA-rich Low_complexity Low_complexity 2 61 0 242 273 11 11 chr12 14749945 14750033 -129532456 + (CACG)n Simple_repeat Simple_repeat 2 89 0 192 40 0 0 chr12 14750935 14750960 -129531529 + (CA)n Simple_repeat Simple_repeat 1 25 0 26 0 0 0 chr12 14752557 14752583 -129529906 + AT_rich Low_complexity Low_complexity 1 26 0 235 169 0 96 chr12 14753065 14753148 -129529341 + MER116 DNA Mariner 6 80 0 260 347 48 8 chr12 14753171 14753295 -129529194 + L2 LINE L2 3138 3266 -6 2220 109 10 3 chr12 14753530 14753834 -129528655 + AluSp SINE Alu 1 306 -7 2312 201 114 24 chr12 14754189 14754926 -129527563 - MER69 DNA AcHobo -21 2505 1703 878 119 0 0 chr12 14754938 14755072 -129527417 - LTR1 LTR ERV1 -642 143 10 964 270 30 4 chr12 14755321 14755554 -129526935 - MER69 DNA AcHobo -842 384 146 1469 153 0 0 chr12 14755563 14755779 -129526710 + AluSx SINE Alu 53 268 -44 22 0 0 0 chr12 14755783 14755805 -129526684 + AT_rich Low_complexity Low_complexity 1 22 0 597 243 88 0 chr12 14755805 14755953 -129526536 - MER69 DNA AcHobo -2364 162 2 2416 89 7 0 chr12 14756448 14756751 -129525738 - AluSg SINE Alu -5 305 1 258 156 0 0 chr12 14757932 14757977 -129524512 + (CA)n Simple_repeat Simple_repeat 1 45 0 361 247 0 0 chr12 14758093 14758166 -129524323 + L2 LINE L2 3197 3269 -44 30 77 0 0 chr12 14758382 14758447 -129524042 + AT_rich Low_complexity Low_complexity 1 65 0 564 258 67 86 chr12 14758447 14758819 -129523670 - HAL1 LINE L1 0 2507 2143 1132 262 51 16 chr12 14758840 14759214 -129523275 - L1MC4 LINE L1 -387 7655 7269 795 225 46 41 chr12 14759492 14759923 -129522566 + MLT1H LTR MaLR 23 409 0 470 297 42 6 chr12 14760283 14760448 -129522041 - MIR SINE MIR -44 218 48 806 241 103 5 chr12 14760855 14761079 -129521410 - MIR SINE MIR 0 262 17 239 265 96 0 chr12 14761142 14761225 -129521264 - MLT1I LTR MaLR 0 409 319 494 281 75 6 chr12 14761377 14761537 -129520952 - MLT1I LTR MaLR -230 179 9 2066 122 0 53 chr12 14762028 14762347 -129520142 + AluSx SINE Alu 1 302 -10 1256 169 13 42 chr12 14762380 14762513 -129519976 + AluJb SINE Alu 1 125 -187 2260 107 0 23 chr12 14762513 14762823 -129519666 + AluSx SINE Alu 1 303 -9 1256 169 13 42 chr12 14762823 14762926 -129519563 + AluJb SINE Alu 125 230 -82 511 143 45 26 chr12 14762950 14763104 -129519385 + GA-rich Low_complexity Low_complexity 3 159 0 2333 48 7 14 chr12 14764027 14764320 -129518169 - AluY SINE Alu -9 302 12 301 295 125 52 chr12 14764471 14764759 -129517730 - L1ME LINE L1 -265 5856 5548 255 314 0 0 chr12 14765738 14765808 -129516681 + L2 LINE L2 2169 2238 -1076 245 350 70 0 chr12 14765857 14766000 -129516489 + L2 LINE L2 2617 2769 -545 2107 113 27 87 chr12 14766242 14766612 -129515877 + MER7A DNA MER2_type 1 346 0 1993 135 40 30 chr12 14767308 14767679 -129514810 + THE1C LTR MaLR 1 375 0 2422 74 0 3 chr12 14768778 14769090 -129513399 - AluY SINE Alu 0 311 1 2546 101 8 3 chr12 14771061 14771427 -129511062 - L1PB1 LINE L1 -3 6148 5781 256 128 5 97 chr12 14771427 14771623 -129510866 + (TA)n Simple_repeat Simple_repeat 2 179 0 240 226 88 29 chr12 14771642 14771744 -129510745 + L1MC4 LINE L1 6614 6721 -1321 * 11323 155 73 23 chr12 14771717 14776691 -129505798 - L1P5 LINE L1 -363 6504 1101 396 303 69 11 chr12 14777280 14777455 -129505034 + L3b LINE CR1 1161 1345 -238 239 261 15 0 chr12 14777475 14777540 -129504949 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 22 0 0 0 chr12 14777815 14777837 -129504652 + AT_rich Low_complexity Low_complexity 1 22 0 264 306 43 104 chr12 14778209 14778624 -129503865 - L2 LINE L2 -337 2977 2588 1006 193 0 38 chr12 14778773 14779011 -129503478 + L1MB8 LINE L1 5934 6162 -16 674 203 54 20 chr12 14779025 14779173 -129503316 + MLT2C1 LTR ERVL 189 341 -56 195 181 0 48 chr12 14779173 14779278 -129503211 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 2458 224 22 27 chr12 14779318 14780081 -129502408 + MLT1C-int LTR MaLR 1 875 -496 1659 243 90 0 chr12 14780292 14780670 -129501819 + MLT1C-int LTR MaLR 960 1371 0 1360 219 98 36 chr12 14780670 14780999 -129501490 + MLT1C LTR MaLR 1 365 -102 13937 129 48 18 chr12 14780999 14782379 -129500110 - Tigger1 DNA MER2_type 0 2418 939 2117 129 0 19 chr12 14782379 14782689 -129499800 - AluSx SINE Alu -8 304 1 13937 129 48 18 chr12 14782689 14783657 -129498832 - Tigger1 DNA MER2_type -1479 939 1 1360 219 98 36 chr12 14783657 14783766 -129498723 + MLT1C LTR MaLR 365 466 -1 32 57 0 0 chr12 14784320 14784373 -129498116 + AT_rich Low_complexity Low_complexity 1 53 0 770 289 127 52 chr12 14784943 14785406 -129497083 - MLT1J LTR MaLR -8 503 6 21 0 0 0 chr12 14785586 14785607 -129496882 + AT_rich Low_complexity Low_complexity 1 21 0 255 235 111 12 chr12 14786677 14786758 -129495731 - L2 LINE L2 0 3313 3225 180 0 0 0 chr12 14786864 14786884 -129495605 + (A)n Simple_repeat Simple_repeat 1 20 0 5893 282 86 20 chr12 14786990 14790697 -129491792 - L1ME1 LINE L1 -9 6655 2700 1343 272 65 59 chr12 14790709 14791020 -129491469 - L1ME1 LINE L1 -4153 2491 2184 2623 49 0 0 chr12 14791020 14791328 -129491161 - AluY SINE Alu -3 308 1 1343 272 65 59 chr12 14791328 14791485 -129491004 - L1ME1 LINE L1 -4460 2184 2030 1477 170 27 82 chr12 14791485 14791815 -129490674 - AluJo SINE Alu 0 312 1 1343 272 65 59 chr12 14791815 14792410 -129490079 - L1ME1 LINE L1 -4614 2030 1311 1272 235 15 0 chr12 14792459 14792800 -129489689 - L1ME1 LINE L1 -5190 1356 1011 24 0 0 0 chr12 14792805 14792829 -129489660 + AT_rich Low_complexity Low_complexity 1 24 0 295 307 52 26 chr12 14792963 14793116 -129489373 - L1ME1 LINE L1 -5667 875 719 225 0 0 0 chr12 14793484 14793509 -129488980 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr12 14794032 14794054 -129488435 + AT_rich Low_complexity Low_complexity 1 22 0 2077 113 3 13 chr12 14794060 14794193 -129488296 + AluSx SINE Alu 3 136 -176 2501 68 0 0 chr12 14794193 14794503 -129487986 + AluY SINE Alu 1 310 -1 2077 113 3 13 chr12 14794503 14794660 -129487829 + AluSx SINE Alu 136 292 -20 2359 82 3 19 chr12 14794660 14794978 -129487511 + AluSq SINE Alu 1 313 0 23 0 0 0 chr12 14796176 14796199 -129486290 + AT_rich Low_complexity Low_complexity 1 23 0 2071 123 3 3 chr12 14796761 14797061 -129485428 + AluJb SINE Alu 5 304 -8 1175 176 49 59 chr12 14797191 14797515 -129484974 - MER33 DNA MER1_type -3 321 1 225 320 90 0 chr12 14798792 14798914 -129483575 - L3b LINE CR1 -338 1245 1113 251 244 167 0 chr12 14799773 14799863 -129482626 + MER103 DNA DNA 14 118 -48 2065 116 3 3 chr12 14800406 14800712 -129481777 + AluSq SINE Alu 1 306 0 2441 190 39 16 chr12 14800742 14801236 -129481253 + MLT1D LTR MaLR 1 505 0 2452 84 0 3 chr12 14801360 14801669 -129480820 - AluSp SINE Alu -2 311 4 2656 196 20 46 chr12 14802781 14803342 -129479147 + MLT2B3 LTR ERVL 1 546 -8 792 225 19 9 chr12 14803643 14803856 -129478633 + L1MB2 LINE L1 5117 5331 -815 1108 121 21 32 chr12 14803859 14804049 -129478440 + L1PA16 LINE L1 5970 6157 -9 2324 103 0 0 chr12 14804074 14804376 -129478113 + AluSx SINE Alu 1 302 -10 483 181 72 36 chr12 14804386 14804524 -129477965 + L1MB2 LINE L1 5287 5429 -751 31949 105 11 56 chr12 14804536 14810971 -129471518 + L1PA7 LINE L1 12 6141 -13 3968 145 20 29 chr12 14810984 14811743 -129470746 + L1MB2 LINE L1 5417 6168 -3 275 351 50 18 chr12 14813120 14813293 -129469196 + MIR SINE MIR 32 208 -54 2010 142 7 0 chr12 14813302 14813598 -129468891 - AluSx SINE Alu -14 298 1 845 168 69 0 chr12 14814067 14814240 -129468249 + MER3 DNA MER1_type 4 188 -21 240 35 0 0 chr12 14815951 14815980 -129466509 + (CA)n Simple_repeat Simple_repeat 1 29 0 233 343 96 61 chr12 14817821 14818325 -129464164 - L2 LINE L2 0 3272 2754 616 333 116 35 chr12 14818849 14819198 -129463291 - L2 LINE L2 -609 2705 2386 1802 158 24 30 chr12 14819198 14819496 -129462993 + AluJb SINE Alu 3 298 -14 616 333 116 35 chr12 14819496 14819774 -129462715 - L2 LINE L2 -928 2386 2027 393 156 126 52 chr12 14820265 14820400 -129462089 - MER112 DNA MER1_type -49 211 67 1768 143 91 96 chr12 14820451 14820879 -129461610 + MSTB LTR MaLR 1 426 0 731 271 52 61 chr12 14820969 14821202 -129461287 - LTR16C LTR ERVL -4 487 256 1072 219 37 0 chr12 14821202 14821417 -129461072 - MER58A DNA MER1_type -1 223 1 731 271 52 61 chr12 14821417 14821493 -129460996 - LTR16C LTR ERVL -235 256 181 27 0 0 0 chr12 14821607 14821634 -129460855 + AT_rich Low_complexity Low_complexity 1 27 0 213 356 74 22 chr12 14822151 14822286 -129460203 - MIR3 SINE MIR -46 162 21 792 235 169 86 chr12 14822476 14822978 -129459511 + MLT1H LTR MaLR 6 549 0 341 248 64 40 chr12 14825412 14825537 -129456952 - L2 LINE L2 -5 3308 3181 252 387 43 35 chr12 14825592 14825822 -129456667 + L2 LINE L2 2553 2784 -530 666 245 68 59 chr12 14825836 14826100 -129456389 - MIR SINE MIR -4 258 5 1686 139 70 22 chr12 14826366 14826639 -129455850 - AluSx SINE Alu -26 286 1 186 298 0 0 chr12 14827690 14827737 -129454752 - MIR SINE MIR -109 99 53 2209 114 18 47 chr12 14828319 14828705 -129453784 - THE1C LTR MaLR 0 375 1 391 278 309 11 chr12 14829537 14829728 -129452761 - MIR SINE MIR -8 254 7 4144 122 12 12 chr12 14829751 14830401 -129452088 + MER39B LTR ERV1 4 653 0 616 291 133 22 chr12 14831323 14831728 -129450761 - MLT1K LTR MaLR -17 571 122 637 249 17 28 chr12 14832288 14832465 -129450024 + LTR33 LTR ERVL 9 183 -338 497 209 22 22 chr12 14832575 14832714 -129449775 + LTR33 LTR ERVL 383 521 0 2511 46 0 3 chr12 14833712 14834019 -129448470 + AluY SINE Alu 1 306 -5 454 175 72 10 chr12 14835137 14835234 -129447255 + MLT1K LTR MaLR 480 582 -6 182 241 0 56 chr12 14835324 14835378 -129447111 + MER5A DNA MER1_type 19 69 -120 306 276 48 38 chr12 14835786 14835996 -129446493 + L1ME1 LINE L1 5613 5824 -297 434 192 231 19 chr12 14836060 14836216 -129446273 + MER53 DNA DNA 1 189 0 3746 156 50 1 chr12 14836306 14836972 -129445517 + MER50 LTR ERV1 13 710 -24 314 239 11 0 chr12 14837205 14837297 -129445192 + CT-rich Low_complexity Low_complexity 4 96 0 1470 213 195 24 chr12 14837823 14838284 -129444205 + MLT1F LTR MaLR 1 540 -2 358 239 73 40 chr12 14838284 14838457 -129444032 + L1ME LINE L1 534 695 -5375 487 254 83 16 chr12 14838483 14838676 -129443813 - L1M4 LINE L1 -1715 4431 4226 358 219 193 82 chr12 14838680 14838950 -129443539 + L1ME1 LINE L1 5863 6162 -4 22 0 0 0 chr12 14839188 14839210 -129443279 + AT_rich Low_complexity Low_complexity 1 22 0 227 211 77 19 chr12 14839256 14839308 -129443181 - MIR SINE MIR -75 133 79 240 397 19 6 chr12 14839398 14839554 -129442935 - L2 LINE L2 -211 3061 2904 1373 290 105 18 chr12 14840154 14840725 -129441764 + MLT1G LTR MaLR 1 577 -13 315 204 0 0 chr12 14841265 14841319 -129441170 - L2 LINE L2 -1 3312 3259 283 291 31 0 chr12 14841830 14841957 -129440532 - L1ME LINE L1 -710 5452 5322 189 284 68 27 chr12 14842263 14842337 -129440152 - L3 LINE CR1 -582 995 919 285 173 27 0 chr12 14843423 14843498 -129438991 + L1MEc LINE L1 1265 1341 -5055 1933 149 0 0 chr12 14843507 14843789 -129438700 + AluSx SINE Alu 5 286 -26 282 116 0 0 chr12 14843789 14843832 -129438657 + (TA)n Simple_repeat Simple_repeat 2 44 0 216 0 0 0 chr12 14843831 14843855 -129438634 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 858 283 75 21 chr12 14843856 14844585 -129437904 + L1MEc LINE L1 2556 3324 -2891 * 2385 218 24 30 chr12 14844578 14845276 -129437213 + L1M4 LINE L1 4285 4978 -1168 584 213 0 0 chr12 14845276 14845384 -129437105 + Tigger3(Golem) DNA MER2_type 1 108 -2921 4482 112 30 3 chr12 14845385 14846109 -129436380 + Tigger3(Golem) DNA MER2_type 2285 3028 -1 3607 258 71 18 chr12 14846109 14847243 -129435246 - L1M3de LINE L1 -4575 2078 458 976 206 49 111 chr12 14847304 14847692 -129434797 - MLT2B1 LTR ERVL -50 364 1 1162 284 75 16 chr12 14847701 14848399 -129434090 - L1M4 LINE L1 -1816 4330 3592 2277 81 3 17 chr12 14848460 14848758 -129433731 - AluY SINE Alu -17 294 1 326 218 30 0 chr12 14848788 14848889 -129433600 + (TA)n Simple_repeat Simple_repeat 1 104 0 46 33 0 0 chr12 14848913 14848973 -129433516 + AT_rich Low_complexity Low_complexity 1 60 0 731 61 0 0 chr12 14849019 14849117 -129433372 + L1PA6 LINE L1 1 98 -6048 * 34735 60 6 2 chr12 14849115 14854617 -129427872 + L1PA6 LINE L1 623 6147 -7 3651 190 60 12 chr12 14854780 14855935 -129426554 - L1MB7 LINE L1 0 6184 4977 6222 136 59 20 chr12 14855935 14856466 -129426023 - Tigger3b DNA MER2_type -1797 1231 722 2251 98 3 7 chr12 14856466 14856762 -129425727 - AluSq SINE Alu -18 295 1 6222 136 59 20 chr12 14856762 14857403 -129425086 - Tigger3b DNA MER2_type -2306 722 14 1356 264 45 38 chr12 14857407 14858874 -129423615 + L1M4c LINE L1 1582 3150 -3494 437 192 75 41 chr12 14858885 14859031 -129423458 + L1M4c LINE L1 1580 1708 -4834 8331 45 1 0 chr12 14859069 14860868 -129421621 - L1PA5 LINE L1 -3 6151 4352 2770 211 55 40 chr12 14860868 14861763 -129420726 + L1M4c LINE L1 3139 4046 -2598 725 220 62 100 chr12 14861883 14862192 -129420297 + MLT1A1 LTR MaLR 6 302 -63 234 183 267 0 chr12 14862193 14862253 -129420236 - L1M4c LINE L1 -5833 551 476 1830 157 7 7 chr12 14862353 14862677 -129419812 - AluSx SINE Alu 0 324 1 2160 101 44 6 chr12 14862711 14863028 -129419461 - L1PA11 LINE L1 0 6174 5846 587 135 0 0 chr12 14863029 14863118 -129419371 + L1MA2 LINE L1 6196 6284 -20 811 138 8 31 chr12 14865219 14865349 -129417140 + AluSg/x SINE Alu 172 298 -14 290 228 9 138 chr12 14865354 14865578 -129416911 + L1M4c LINE L1 4391 4585 -2059 327 283 90 21 chr12 14865702 14865847 -129416642 + L1M4c LINE L1 4668 4822 -1822 34323 78 21 14 chr12 14966203 14969693 -129312796 - HERVL-A1 LTR ERVL -1112 4542 1079 1985 141 0 33 chr12 14969693 14969999 -129312490 + AluSx SINE Alu 1 296 -16 34323 78 21 14 chr12 14969999 14970665 -129311824 - HERVL-A1 LTR ERVL -4575 1079 348 2109 76 4 8 chr12 14970665 14970929 -129311560 - AluY SINE Alu -20 291 29 34323 78 21 14 chr12 14970929 14971280 -129311209 - HERVL-A1 LTR ERVL -5306 348 1 2860 111 23 20 chr12 14971280 14971723 -129310766 - MLT2A1 LTR ERVL 0 444 1 10928 169 8 28 chr12 14971746 14973542 -129308947 + L1P4 LINE L1 3275 5015 -1146 2221 75 0 7 chr12 14973542 14973820 -129308669 + AluY SINE Alu 36 311 0 10928 169 8 28 chr12 14973820 14974268 -129308221 + L1P4 LINE L1 5015 5470 -691 418 192 0 0 chr12 14974268 14974341 -129308148 + AluSp SINE Alu 116 188 -115 2117 112 7 0 chr12 14974341 14974627 -129307862 + AluSq SINE Alu 18 305 -8 2470 79 3 0 chr12 14974648 14974952 -129307537 + AluSc SINE Alu 1 305 -4 1317 210 104 22 chr12 14975053 14975419 -129307070 - MSTD LTR MaLR 0 396 1 189 0 0 0 chr12 14975504 14975525 -129306964 + (T)n Simple_repeat Simple_repeat 1 21 0 1124 239 17 3 chr12 14975555 14975844 -129306645 + L1MA4 LINE L1 6005 6297 -3 230 183 17 17 chr12 14975840 14975900 -129306589 + L1M4c LINE L1 5142 5201 -1443 * 2351 50 4 0 chr12 14975904 14976184 -129306305 + AluY SINE Alu 1 281 -30 951 230 261 46 chr12 14976199 14976492 -129305997 + LTR50 LTR ERVL 150 378 -417 2033 136 0 7 chr12 14976492 14976786 -129305703 + AluSx SINE Alu 1 292 -20 951 230 261 46 chr12 14976786 14976802 -129305687 + LTR50 LTR ERVL 378 389 -406 2384 59 3 3 chr12 14976802 14977092 -129305397 - AluY SINE Alu -19 292 3 951 230 261 46 chr12 14977092 14977263 -129305226 + LTR50 LTR ERVL 389 735 -60 565 237 0 66 chr12 14977310 14977402 -129305087 - Tigger6a DNA MER2_type -516 1081 1001 859 87 24 0 chr12 14977402 14977529 -129304960 + L1MB2 LINE L1 6042 6171 0 565 237 0 66 chr12 14977529 14977588 -129304901 - Tigger6a DNA MER2_type -596 1001 940 881 145 0 22 chr12 14977588 14977726 -129304763 + FLAM_C SINE Alu 1 135 -8 3832 154 31 114 chr12 14977727 14978196 -129304293 - Tigger6a DNA MER2_type -647 950 443 2722 42 0 0 chr12 14978196 14978507 -129303982 - AluY SINE Alu 0 311 1 3832 154 31 114 chr12 14978507 14979004 -129303485 - Tigger6a DNA MER2_type -1154 443 -94 1876 133 25 0 chr12 14979004 14979283 -129303206 - AluSg SINE Alu -24 286 1 3832 154 31 114 chr12 14979283 14979315 -129303174 - Tigger6a DNA MER2_type -1691 4294967202 56 1547 198 144 5 chr12 14979315 14979725 -129302764 + MLT1C LTR MaLR 1 467 0 3832 154 31 114 chr12 14979725 14979777 -129302712 - Tigger6a DNA MER2_type -1540 57 2 31 0 0 0 chr12 14979785 14979816 -129302673 + AT_rich Low_complexity Low_complexity 1 31 0 2177 108 20 7 chr12 14979820 14980116 -129302373 - AluSg SINE Alu -10 300 1 22 0 0 0 chr12 14980564 14980586 -129301903 + AT_rich Low_complexity Low_complexity 1 22 0 2118 108 0 57 chr12 14980650 14980964 -129301525 - AluSg SINE Alu -12 298 3 2249 123 0 3 chr12 14980965 14981267 -129301222 - AluSx SINE Alu -11 301 1 2432 222 31 56 chr12 14981448 14981560 -129300929 + L1 LINE L1 2804 2917 -3229 1973 110 59 0 chr12 14981560 14981850 -129300639 + AluY SINE Alu 5 311 0 2432 222 31 56 chr12 14981850 14982712 -129299777 + L1 LINE L1 2917 3695 -2451 238 151 70 12 chr12 14982740 14982826 -129299663 + L1 LINE L1 3663 3753 -2393 1647 106 5 0 chr12 14982844 14983062 -129299427 + AluSq SINE Alu 3 221 -92 689 129 0 0 chr12 14983065 14983166 -129299323 - AluS SINE Alu -210 102 2 2220 84 20 13 chr12 14983177 14983475 -129299014 - AluSx SINE Alu -12 300 1 2348 85 13 0 chr12 14983557 14983864 -129298625 - AluY SINE Alu 0 311 1 2148 117 0 0 chr12 14984628 14984943 -129297546 - AluSg SINE Alu 0 315 1 650 347 48 3 chr12 14985344 14985696 -129296793 + ERVL LTR ERVL 4704 5071 -693 349 214 51 26 chr12 14985880 14985997 -129296492 + ERVL LTR ERVL 5261 5380 -384 746 225 41 103 chr12 14986056 14986118 -129296371 + MLT1J LTR MaLR 9 73 -438 1932 133 14 7 chr12 14986118 14986411 -129296078 - AluJb SINE Alu -17 295 1 746 225 41 103 chr12 14986411 14986619 -129295870 + MLT1J LTR MaLR 73 262 -249 920 124 16 0 chr12 14986767 14986896 -129295593 + AluSq/x SINE Alu 1 131 -181 1118 201 11 49 chr12 14986899 14987162 -129295327 + MLT1E3 LTR MaLR 372 624 0 1976 155 0 0 chr12 14987572 14987876 -129294613 - AluSx SINE Alu -8 304 1 2065 124 0 17 chr12 14987881 14988198 -129294291 - AluSx SINE Alu 0 312 1 789 224 54 85 chr12 14988349 14988608 -129293881 + MLT1J LTR MaLR 261 511 0 1782 164 28 3 chr12 14988883 14989169 -129293320 + AluJb SINE Alu 1 293 -19 897 230 123 109 chr12 14989271 14989750 -129292739 - MLT1D LTR MaLR 0 505 20 189 0 0 0 chr12 14989828 14989849 -129292640 + (TA)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr12 14989864 14989899 -129292590 + AT_rich Low_complexity Low_complexity 1 35 0 324 70 0 0 chr12 14989921 14989964 -129292525 + (TG)n Simple_repeat Simple_repeat 2 44 0 1055 127 0 7 chr12 14989965 14990115 -129292374 - AluSg/x SINE Alu -17 295 147 279 286 126 39 chr12 14990648 14990768 -129291721 + MIR SINE MIR 53 196 -66 2418 86 0 3 chr12 14990768 14991071 -129291418 + AluSg SINE Alu 1 302 -8 279 286 126 39 chr12 14991071 14991132 -129291357 + MIR SINE MIR 196 250 -12 239 204 0 0 chr12 14991251 14991295 -129291194 - MLT1A1 LTR MaLR 0 365 322 799 157 0 0 chr12 14991296 14991417 -129291072 + AluJo SINE Alu 1 121 -181 6095 135 150 99 chr12 14991417 14993027 -129289462 + pTR5 LTR ERV1 748 2438 0 988 175 68 0 chr12 14993028 14993205 -129289284 + AluJo SINE Alu 111 299 -13 1083 224 78 59 chr12 14993317 14993675 -129288814 - MLT1A1 LTR MaLR 0 365 1 347 89 0 0 chr12 14994740 14994785 -129287704 + Alu SINE Alu 1 45 -256 1294 92 0 6 chr12 14994785 14994958 -129287531 + AluSg/x SINE Alu 137 308 -4 2233 107 10 0 chr12 14995254 14995554 -129286935 + AluSx SINE Alu 1 303 -9 263 371 43 0 chr12 14995607 14995723 -129286766 + L2 LINE L2 3150 3270 -2 1445 143 103 8 chr12 14995801 14996053 -129286436 - AluJo SINE Alu -14 298 23 2308 148 8 23 chr12 14996079 14996484 -129286005 - L1MA5 LINE L1 -172 6012 5674 2162 89 0 18 chr12 14996484 14996766 -129285723 - AluSq SINE Alu -36 277 1 2308 148 8 23 chr12 14996766 14996781 -129285708 - L1MA5 LINE L1 -510 5674 5660 471 18 0 0 chr12 14996825 14996881 -129285608 + (TATG)n Simple_repeat Simple_repeat 2 57 0 2136 122 0 0 chr12 14996881 14997167 -129285322 - AluSx SINE Alu -26 286 1 1469 204 27 7 chr12 14997204 14997498 -129284991 + AluJo SINE Alu 6 305 -7 336 218 182 24 chr12 14997501 14997666 -129284823 - L1MC5 LINE L1 -510 7451 7261 2407 63 7 3 chr12 14997667 14997968 -129284521 - AluY SINE Alu -7 304 3 2331 91 3 0 chr12 14997971 14998267 -129284222 - AluSg SINE Alu -13 297 1 2527 57 0 16 chr12 14998730 14999046 -129283443 + AluY SINE Alu 1 311 0 545 343 164 18 chr12 14999056 14999441 -129283048 - MLT1K LTR MaLR -91 497 57 1165 315 83 12 chr12 14999441 14999983 -129282506 + MLT2E LTR ERVL 1 627 -1 1576 155 37 37 chr12 15000071 15000395 -129282094 + AluJo SINE Alu 1 312 0 2239 155 72 42 chr12 15000395 15000660 -129281829 + L1MA8 LINE L1 5777 6033 -258 2433 70 7 13 chr12 15000660 15000960 -129281529 + AluY SINE Alu 2 299 -12 2239 155 72 42 chr12 15000960 15001010 -129281479 + L1MA8 LINE L1 6033 6080 -211 2064 135 0 7 chr12 15001010 15001314 -129281175 + AluSx SINE Alu 1 302 -10 2239 155 72 42 chr12 15001314 15001494 -129280995 + L1MA8 LINE L1 6080 6288 -3 2427 45 41 7 chr12 15001510 15001800 -129280689 + AluY SINE Alu 1 300 -11 2445 83 0 0 chr12 15001855 15002156 -129280333 + AluY SINE Alu 6 306 -5 713 354 50 20 chr12 15002176 15002572 -129279917 + ERVL-E LTR ERVL 287 694 -5070 2941 88 23 5 chr12 15002676 15003073 -129279416 + MLT2A1 LTR ERVL 1 404 -40 272 97 21 69 chr12 15003073 15003217 -129279272 + (TA)n Simple_repeat Simple_repeat 2 138 0 396 42 0 0 chr12 15003227 15003275 -129279214 + MLT2A1 LTR ERVL 406 453 0 43920 75 8 10 chr12 15003275 15004272 -129278217 + HERVL-A1-A1 LTR ERVL 1 998 -4656 2246 110 7 7 chr12 15004272 15004572 -129277917 - AluSx SINE Alu -12 300 1 43920 75 8 10 chr12 15004572 15006865 -129275624 + HERVL-A1-A1 LTR ERVL 998 3294 -2360 2246 116 0 7 chr12 15006865 15007175 -129275314 - AluSg SINE Alu -2 308 1 43920 75 8 10 chr12 15007175 15009547 -129272942 + HERVL-A1-A1 LTR ERVL 3294 5654 0 2511 101 35 11 chr12 15009547 15009913 -129272576 + MLT2A1 LTR ERVL 1 375 -69 180 0 0 0 chr12 15009913 15009933 -129272556 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 21 0 0 0 chr12 15010115 15010136 -129272353 + AT_rich Low_complexity Low_complexity 1 21 0 344 56 33 22 chr12 15010136 15010196 -129272293 + MLT2A1 LTR ERVL 391 442 -2 1999 269 80 2 chr12 15010198 15010712 -129271777 + ERVL LTR ERVL 2940 3493 -2271 3230 269 71 25 chr12 15010762 15011801 -129270688 + ERVL LTR ERVL 3576 4662 -1102 2054 232 167 16 chr12 15011811 15012571 -129269918 - L1MCa LINE L1 -4489 1937 1063 2081 127 10 16 chr12 15012574 15012882 -129269607 - AluSx SINE Alu -6 306 1 2442 82 3 16 chr12 15012893 15013208 -129269281 - AluY SINE Alu 0 311 1 1884 128 0 66 chr12 15013278 15013413 -129269076 + AluSx SINE Alu 1 143 -181 2300 107 3 3 chr12 15013413 15013723 -129268766 + AluSg SINE Alu 1 310 0 1884 128 0 66 chr12 15013723 15013931 -129268558 + AluSx SINE Alu 143 324 0 1089 125 36 24 chr12 15013934 15014102 -129268387 + AluSg/x SINE Alu 127 296 -16 224 138 64 32 chr12 15014103 15014197 -129268292 + (TA)n Simple_repeat Simple_repeat 1 97 0 6537 78 30 34 chr12 15014939 15016178 -129266311 - L1PA12 LINE L1 0 6168 4931 471 277 78 102 chr12 15016182 15016724 -129265765 - HAL1 LINE L1 -167 2340 1819 2517 68 0 0 chr12 15016724 15017033 -129265456 - AluY SINE Alu -2 309 1 471 277 78 102 chr12 15017033 15017237 -129265252 - HAL1 LINE L1 -688 1819 1612 786 208 7 7 chr12 15017245 15017394 -129265095 - FRAM SINE Alu -26 150 2 566 249 82 85 chr12 15017398 15017715 -129264774 - HAL1 LINE L1 -880 1627 1312 1624 214 84 65 chr12 15017722 15018259 -129264230 + MLT2B3 LTR ERVL 1 547 -7 2264 91 3 0 chr12 15018339 15018650 -129263839 + AluSp SINE Alu 1 312 0 2353 89 0 0 chr12 15018652 15018944 -129263545 + AluSc SINE Alu 1 292 -17 2895 159 18 34 chr12 15019046 15019091 -129263398 - L1MB4 LINE L1 0 6180 6136 2234 126 0 3 chr12 15019091 15019401 -129263088 - AluSx SINE Alu -3 309 1 2895 159 18 34 chr12 15019401 15019977 -129262512 - L1MB4 LINE L1 -44 6136 5569 472 193 8 34 chr12 15019979 15020098 -129262391 - L1MB4 LINE L1 -660 5518 5403 418 225 40 46 chr12 15020103 15020254 -129262235 - L1MB4 LINE L1 -1616 4530 4381 2234 104 3 22 chr12 15020429 15020746 -129261743 + AluSx SINE Alu 1 311 -1 1258 217 92 32 chr12 15020799 15021356 -129261133 - Zaphod DNA AcHobo -189 3842 3253 1738 199 20 35 chr12 15021488 15021886 -129260603 + MSTD LTR MaLR 1 392 -4 5296 247 50 48 chr12 15021892 15022218 -129260271 + MSTD-int LTR MaLR 2 326 -1409 2482 108 27 14 chr12 15022218 15022588 -129259901 - THE1C LTR MaLR 0 375 1 9950 116 38 17 chr12 15022588 15023309 -129259180 - THE1C-int LTR MaLR 0 1580 875 1665 144 8 0 chr12 15023309 15023559 -129258930 - AluSq SINE Alu -19 294 43 9950 116 38 17 chr12 15023559 15023986 -129258503 - THE1C-int LTR MaLR -705 875 458 2201 96 13 23 chr12 15023986 15024288 -129258201 - AluSq SINE Alu -14 299 1 9950 116 38 17 chr12 15024288 15024686 -129257803 - THE1C-int LTR MaLR -1122 458 1 1962 107 45 117 chr12 15024686 15025089 -129257400 - THE1C LTR MaLR 0 375 2 5296 247 50 48 chr12 15025089 15025537 -129256952 + MSTD-int LTR MaLR 326 772 -963 7170 62 8 9 chr12 15025537 15027041 -129255448 + SVA Other Other 1 1386 0 5296 247 50 48 chr12 15027041 15027883 -129254606 + MSTD-int LTR MaLR 772 1625 -110 453 192 25 8 chr12 15027897 15028017 -129254472 + CT-rich Low_complexity Low_complexity 3 124 0 2243 102 6 6 chr12 15028017 15028330 -129254159 - AluSp SINE Alu 0 313 1 2273 105 0 0 chr12 15028634 15028938 -129253551 - AluSc SINE Alu -5 304 1 1081 176 21 0 chr12 15029110 15029298 -129253191 + AluSg/x SINE Alu 121 312 0 552 250 29 0 chr12 15029298 15029470 -129253019 + Zaphod DNA AcHobo 1119 1295 -2736 1703 178 48 55 chr12 15029470 15029685 -129252804 - MSTD LTR MaLR 0 396 184 2235 113 0 0 chr12 15029685 15029978 -129252511 - AluSg SINE Alu -17 293 1 1703 178 48 55 chr12 15029978 15030161 -129252328 - MSTD LTR MaLR -212 184 1 544 171 45 0 chr12 15030161 15030272 -129252217 - MSTD-int LTR MaLR 0 1735 1620 929 114 0 8 chr12 15030273 15030404 -129252085 + AluJb SINE Alu 4 133 -179 2443 94 0 0 chr12 15030406 15030714 -129251775 + AluY SINE Alu 1 308 -3 1309 195 128 137 chr12 15031003 15031645 -129250844 - MLT1E1 LTR MaLR 0 654 19 186 118 0 0 chr12 15031825 15031859 -129250630 + (CTA)n Simple_repeat Simple_repeat 2 35 0 344 274 87 149 chr12 15031866 15031965 -129250524 - MIR SINE MIR -10 252 148 2183 94 0 17 chr12 15031965 15032263 -129250226 - AluSg SINE Alu -17 293 1 1674 166 10 14 chr12 15032266 15032433 -129250056 - AluJb SINE Alu -10 302 135 207 0 0 0 chr12 15032440 15032463 -129250026 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 2108 123 0 0 chr12 15032463 15032748 -129249741 - AluSx SINE Alu -24 288 1 1674 166 10 14 chr12 15032748 15032869 -129249620 - AluJb SINE Alu -177 135 15 344 274 87 149 chr12 15032869 15033006 -129249483 - MIR SINE MIR -116 146 27 2064 114 45 0 chr12 15033093 15033382 -129249107 - AluSq SINE Alu -11 302 1 190 354 92 0 chr12 15034138 15034203 -129248286 + L2 LINE L2 3243 3313 0 2186 121 10 3 chr12 15034426 15034732 -129247757 + AluSx SINE Alu 1 308 -4 2278 111 0 0 chr12 15034732 15035029 -129247460 + AluSg SINE Alu 1 297 -13 26 0 0 0 chr12 15035204 15035230 -129247259 + AT_rich Low_complexity Low_complexity 1 26 0 219 250 39 19 chr12 15035417 15035469 -129247020 + L2 LINE L2 3022 3074 -198 2281 82 0 29 chr12 15035472 15035778 -129246711 - AluSc SINE Alu -12 297 1 206 286 0 18 chr12 15035890 15035946 -129246543 + L2 LINE L2 3168 3222 -91 2172 113 0 22 chr12 15036088 15036406 -129246083 - AluSx SINE Alu -1 311 1 213 257 164 24 chr12 15036416 15036564 -129245925 - MIR SINE MIR -58 204 39 200 86 29 0 chr12 15037188 15037223 -129245266 + (CGG)n Simple_repeat Simple_repeat 3 38 0 300 237 129 50 chr12 15037397 15037536 -129244953 - L1M2 LINE L1 -6167 682 533 273 216 54 0 chr12 15039796 15039870 -129242619 - L1ME LINE L1 -254 5867 5790 406 322 14 34 chr12 15039873 15040081 -129242408 - L1ME4a LINE L1 -269 5852 5649 315 267 156 37 chr12 15040155 15040290 -129242199 - L1ME4a LINE L1 -2345 5463 5313 1420 206 20 30 chr12 15040457 15040753 -129241736 - AluJb SINE Alu -19 293 1 1686 149 62 0 chr12 15040848 15041137 -129241352 - AluSx SINE Alu -5 307 1 2341 88 7 0 chr12 15041440 15041736 -129240753 - AluSp SINE Alu -15 298 1 21 36 0 0 chr12 15042476 15042504 -129239985 + AT_rich Low_complexity Low_complexity 1 28 0 413 348 118 10 chr12 15044866 15045162 -129237327 - MLT1J LTR MaLR -183 328 1 21 0 0 0 chr12 15045320 15045341 -129237148 + AT_rich Low_complexity Low_complexity 1 21 0 1849 127 3 63 chr12 15045598 15045914 -129236575 - AluJo SINE Alu -15 297 1 204 200 0 0 chr12 15047033 15047088 -129235401 + A-rich Low_complexity Low_complexity 1 55 0 385 230 118 15 chr12 15047143 15047278 -129235211 + MIR SINE MIR 84 232 -30 941 120 0 0 chr12 15048316 15048441 -129234048 + AluSg/x SINE Alu 173 297 -15 1991 147 0 0 chr12 15048485 15048795 -129233694 - AluSx SINE Alu 0 310 1 1979 67 4 4 chr12 15048858 15049112 -129233377 - AluY SINE Alu -14 297 44 2089 117 6 44 chr12 15049112 15049428 -129233061 - AluSx SINE Alu -7 305 1 2367 107 0 0 chr12 15049589 15049898 -129232591 - AluSx SINE Alu -3 309 1 2351 244 144 57 chr12 15050458 15050528 -129231961 - HAL1 LINE L1 -629 1878 1816 2492 131 36 17 chr12 15050528 15050948 -129231541 + MSTA LTR MaLR 1 428 0 2351 244 144 57 chr12 15050948 15052117 -129230372 - HAL1 LINE L1 -691 1816 751 2166 122 10 0 chr12 15052117 15052420 -129230069 - AluSx SINE Alu -6 306 1 2351 244 144 57 chr12 15052420 15052738 -129229751 - HAL1 LINE L1 -1756 751 462 1816 157 7 3 chr12 15052738 15053031 -129229458 - AluSx SINE Alu -18 294 1 2351 244 144 57 chr12 15053031 15053108 -129229381 - HAL1 LINE L1 -2045 462 99 21 36 0 0 chr12 15053217 15053245 -129229244 + AT_rich Low_complexity Low_complexity 1 28 0 935 201 0 34 chr12 15053502 15053681 -129228808 + AluJo SINE Alu 86 258 -54 240 141 35 0 chr12 15054672 15054719 -129227770 - Tigger4(Zombi) DNA MER2_type -2679 52 -1 1506 171 20 47 chr12 15055064 15055362 -129227127 - AluJo SINE Alu -22 290 1 326 236 47 39 chr12 15055548 15055675 -129226814 - L1MC5 LINE L1 -44 7917 7790 765 143 0 0 chr12 15059508 15059634 -129222855 - AluSp/q SINE Alu -7 306 181 1640 111 0 0 chr12 15059634 15059850 -129222639 - AluSp SINE Alu -97 216 1 2284 108 0 0 chr12 15059852 15060147 -129222342 - AluSx SINE Alu -17 295 1 1850 163 24 0 chr12 15060147 15060436 -129222053 - AluSx SINE Alu -12 300 5 2474 56 13 0 chr12 15061120 15061424 -129221065 - AluSp SINE Alu -5 308 1 391 245 185 10 chr12 15061433 15061633 -129220856 + MER102b DNA MER1_type 91 325 -16 185 306 83 0 chr12 15062988 15063060 -129219429 + MIR SINE MIR 67 144 -118 183 281 47 31 chr12 15063072 15063136 -129219353 + MIR SINE MIR 20 84 -178 2193 99 3 0 chr12 15063215 15063521 -129218968 - AluSq SINE Alu 0 307 1 267 257 73 28 chr12 15063547 15063656 -129218833 + MIR SINE MIR 94 207 -55 254 270 180 42 chr12 15064008 15064197 -129218292 - L2 LINE L2 -8 3305 3091 821 250 117 4 chr12 15064211 15064459 -129218030 + MER5C DNA MER1_type 2 277 -47 30 0 0 0 chr12 15067308 15067338 -129215151 + AT_rich Low_complexity Low_complexity 1 30 0 2370 87 0 10 chr12 15068382 15068694 -129213795 + AluSq SINE Alu 4 312 -1 634 318 134 59 chr12 15068850 15069476 -129213013 - L3 LINE CR1 -2 1575 903 336 271 100 59 chr12 15069537 15070113 -129212376 - L1MDa LINE L1 -2838 3702 3033 228 264 39 39 chr12 15070323 15070452 -129212037 - L1MDa LINE L1 -3823 2717 2589 463 299 72 45 chr12 15070705 15071137 -129211352 - L1MDa LINE L1 -869 2032 1633 392 346 108 9 chr12 15071808 15072022 -129210467 - MIR SINE MIR -10 252 18 328 295 70 26 chr12 15072405 15072561 -129209928 - L1M4 LINE L1 -779 5367 5205 2089 125 0 3 chr12 15072694 15072997 -129209492 - AluSq SINE Alu -11 302 1 2131 101 14 0 chr12 15073215 15073512 -129208977 - AluSg SINE Alu -9 301 1 245 109 22 0 chr12 15073562 15073608 -129208881 + CT-rich Low_complexity Low_complexity 2 48 0 1832 186 3 3 chr12 15073616 15073928 -129208561 - AluJo SINE Alu 0 312 1 1832 135 42 3 chr12 15074109 15074398 -129208091 - AluSx SINE Alu -12 300 1 1948 157 0 13 chr12 15076904 15077217 -129205272 - AluJb SINE Alu -1 311 3 1972 127 7 0 chr12 15077600 15077899 -129204590 - AluSq SINE Alu -12 301 1 525 105 0 0 chr12 15078166 15078242 -129204247 - AluSg1 SINE Alu -13 297 222 1101 101 0 7 chr12 15078242 15078390 -129204099 - AluSg1 SINE Alu -160 149 3 220 220 0 0 chr12 15078859 15078909 -129203580 + T-rich Low_complexity Low_complexity 1 50 0 198 0 0 0 chr12 15078909 15078931 -129203558 + (GTTTG)n Simple_repeat Simple_repeat 3 24 0 198 261 0 0 chr12 15079276 15079322 -129203167 - L2 LINE L2 -5 3308 3263 234 0 0 0 chr12 15079617 15079643 -129202846 + (CA)n Simple_repeat Simple_repeat 1 26 0 1102 204 26 30 chr12 15081404 15081668 -129200821 - L1MB7 LINE L1 0 6184 5922 2726 195 39 36 chr12 15081668 15082245 -129200244 + Tigger7 DNA MER2_type 1 574 -2013 198 0 0 0 chr12 15082245 15082267 -129200222 + (TATG)n Simple_repeat Simple_repeat 2 23 0 2726 195 39 36 chr12 15082267 15082365 -129200124 + Tigger7 DNA MER2_type 574 2587 0 4686 195 45 31 chr12 15082365 15082910 -129199579 - L1MB7 LINE L1 -255 5923 5388 1054 49 0 28 chr12 15082910 15083054 -129199435 + L1PA7 LINE L1 6015 6154 0 4686 195 45 31 chr12 15083054 15084232 -129198257 - L1MB7 LINE L1 -790 5388 4165 2054 134 0 0 chr12 15084232 15084530 -129197959 + AluSx SINE Alu 1 298 -14 4686 195 45 31 chr12 15084530 15084742 -129197747 - L1MB7 LINE L1 -2013 4165 3958 24 32 0 0 chr12 15085418 15085449 -129197040 + AT_rich Low_complexity Low_complexity 1 31 0 464 304 34 34 chr12 15085470 15085618 -129196871 - MIR3 SINE MIR -24 184 37 353 242 34 153 chr12 15085777 15085868 -129196621 + MLT1I LTR MaLR 80 143 -266 1044 152 141 0 chr12 15085868 15086066 -129196423 - MER30 DNA MER1_type -1 229 4 353 242 34 153 chr12 15086066 15086183 -129196306 + MLT1I LTR MaLR 143 272 -137 629 212 8 15 chr12 15086436 15086568 -129195921 - FLAM_A SINE Alu -2 131 1 1155 194 0 15 chr12 15087264 15087470 -129195019 - MER2 DNA MER2_type -137 208 6 27 62 0 0 chr12 15089602 15089650 -129192839 + AT_rich Low_complexity Low_complexity 1 48 0 28 0 0 0 chr12 15090381 15090409 -129192080 + AT_rich Low_complexity Low_complexity 1 28 0 580 262 76 40 chr12 15090587 15090812 -129191677 - MIR SINE MIR -12 250 18 1609 224 91 37 chr12 15091523 15091848 -129190641 - MER90 LTR ERV1 -6 569 202 2448 75 0 0 chr12 15091848 15092153 -129190336 + AluY SINE Alu 1 305 -6 1609 224 91 37 chr12 15092153 15092367 -129190122 - MER90 LTR ERV1 -373 202 1 785 223 120 24 chr12 15092542 15092834 -129189655 - L1M4 LINE L1 -1986 4160 3841 1385 178 122 36 chr12 15092858 15093247 -129189242 - MLT1C LTR MaLR -56 411 1 234 337 0 12 chr12 15093344 15093427 -129189062 - L1M4 LINE L1 -2292 3854 3773 * 935 221 54 26 chr12 15093423 15093813 -129188676 + L1M4 LINE L1 2863 3263 -2883 405 0 0 0 chr12 15093813 15093858 -129188631 + (CA)n Simple_repeat Simple_repeat 2 46 0 4300 177 46 7 chr12 15093882 15094771 -129187718 - L1MB8 LINE L1 0 6178 5255 346 151 86 11 chr12 15094818 15094911 -129187578 - L1MB8 LINE L1 -873 5273 5174 216 0 0 0 chr12 15095075 15095099 -129187390 + (T)n Simple_repeat Simple_repeat 1 24 0 180 313 167 21 chr12 15097389 15097533 -129184956 + L2 LINE L2 2362 2526 -788 2036 134 10 0 chr12 15098045 15098351 -129184138 + AluJb SINE Alu 1 309 -3 1130 207 0 0 chr12 15098612 15098829 -129183660 - AluJo SINE Alu -1 311 95 2206 90 0 10 chr12 15098863 15099164 -129183325 - AluSg SINE Alu -12 298 1 692 222 123 6 chr12 15099178 15099349 -129183140 + L2 LINE L2 2410 2600 -714 337 202 11 75 chr12 15099316 15099410 -129183079 + L2 LINE L2 3226 3313 0 * 204 333 93 46 chr12 15099349 15099565 -129182924 - L2 LINE L2 -424 2890 2665 * 1435 237 89 59 chr12 15101432 15101960 -129180529 - L2 LINE L2 -1022 2292 1749 352 203 30 36 chr12 15102049 15102194 -129180295 - L1P LINE L1 -731 5420 5270 259 216 0 81 chr12 15102248 15102322 -129180167 + MER58A DNA MER1_type 35 102 -5 322 274 27 0 chr12 15102415 15102488 -129180001 + MER58A DNA MER1_type 149 223 -1 2313 94 0 0 chr12 15102896 15103193 -129179296 - AluY SINE Alu -13 298 2 2308 84 0 19 chr12 15104587 15104725 -129177764 + AluSq SINE Alu 1 140 -173 2138 122 0 0 chr12 15104725 15105021 -129177468 + AluSc SINE Alu 1 296 -13 2308 84 0 19 chr12 15105021 15105193 -129177296 + AluSq SINE Alu 140 305 -8 25 75 0 0 chr12 15105562 15105615 -129176874 + AT_rich Low_complexity Low_complexity 1 53 0 1591 193 0 7 chr12 15106304 15106584 -129175905 + AluJo SINE Alu 1 278 -34 318 127 42 0 chr12 15106597 15106668 -129175821 + GA-rich Low_complexity Low_complexity 2 75 0 271 264 23 58 chr12 15106730 15106817 -129175672 + MIR SINE MIR 20 103 -105 2089 128 0 0 chr12 15107910 15108221 -129174268 + AluSx SINE Alu 1 311 0 184 281 125 0 chr12 15109017 15109081 -129173408 + MER5C DNA MER1_type 1 72 -252 2657 10 0 0 chr12 15109272 15109565 -129172924 + AluYa5 SINE Alu 1 293 -18 2576 156 33 15 chr12 15109897 15110351 -129172138 - MLT1C LTR MaLR -4 463 2 240 364 49 28 chr12 15110781 15110924 -129171565 - MIR3 SINE MIR -62 146 1 1891 152 0 7 chr12 15111049 15111338 -129171151 + AluSx SINE Alu 1 287 -25 432 0 0 0 chr12 15111341 15111389 -129171100 + (TCCA)n Simple_repeat Simple_repeat 2 49 0 25 0 0 0 chr12 15111902 15111927 -129170562 + AT_rich Low_complexity Low_complexity 1 25 0 4309 159 52 54 chr12 15112111 15112988 -129169501 - L1MB5 LINE L1 0 6174 5289 2360 63 10 10 chr12 15112988 15113289 -129169200 - AluY SINE Alu -10 301 1 4309 159 52 54 chr12 15113289 15113436 -129169053 - L1MB5 LINE L1 -885 5289 5143 1169 232 60 6 chr12 15113434 15113783 -129168706 - L1M4c LINE L1 -3911 2473 2106 * 2158 118 0 0 chr12 15114373 15114661 -129167828 + AluSx SINE Alu 1 288 -24 459 351 96 6 chr12 15114917 15115250 -129167239 + L1M4 LINE L1 3803 4165 -1981 363 335 138 18 chr12 15115291 15115631 -129166858 + L1M4 LINE L1 4258 4638 -1508 2313 94 3 0 chr12 15116491 15116789 -129165700 - AluSg SINE Alu -11 299 1 246 140 0 0 chr12 15116884 15116929 -129165560 - Alu SINE Alu -2 306 264 416 148 0 0 chr12 15116929 15116990 -129165499 - AluS SINE Alu -250 61 1 2413 97 0 0 chr12 15117638 15117948 -129164541 - AluSx SINE Alu -2 310 1 2173 119 10 0 chr12 15118779 15119081 -129163408 - AluSx SINE Alu -7 305 1 22 35 0 0 chr12 15119559 15119588 -129162901 + AT_rich Low_complexity Low_complexity 1 29 0 863 192 17 109 chr12 15119724 15120026 -129162463 - L1MD2 LINE L1 -56 6303 6030 6650 191 55 40 chr12 15120050 15122309 -129160180 - L1M3 LINE L1 -410 5585 3286 1174 161 124 5 chr12 15122314 15122532 -129159957 - AluSx SINE Alu -25 287 44 3523 245 63 28 chr12 15122532 15125130 -129157359 - L1M3 LINE L1 -2624 3346 634 2167 112 0 0 chr12 15125130 15125425 -129157064 - AluSq SINE Alu -18 295 1 3523 245 63 28 chr12 15125425 15125675 -129156814 - L1M3 LINE L1 -5336 634 394 257 345 47 35 chr12 15126020 15126252 -129156237 - L1M3 LINE L1 -5649 242 8 2101 105 10 23 chr12 15126397 15126702 -129155787 + AluSx SINE Alu 1 301 -11 1757 167 0 13 chr12 15127083 15127389 -129155100 - AluJo SINE Alu -10 302 1 285 259 0 0 chr12 15127654 15127712 -129154777 + L2 LINE L2 3256 3313 0 571 228 39 31 chr12 15128945 15129072 -129153417 + FLAM_A SINE Alu 2 129 -4 4454 191 61 82 chr12 15129131 15129313 -129153176 - Charlie1a DNA MER1_type -1307 1454 1270 2082 119 3 7 chr12 15129313 15129607 -129152882 + AluSx SINE Alu 1 293 -19 4454 191 61 82 chr12 15129607 15130046 -129152443 - Charlie1a DNA MER1_type -1491 1270 823 1676 181 0 3 chr12 15130046 15130338 -129152151 + AluJb SINE Alu 7 297 -15 4454 191 61 82 chr12 15130338 15131200 -129151289 - Charlie1a DNA MER1_type -1938 823 1 21 71 0 0 chr12 15131643 15131685 -129150804 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr12 15183260 15183295 -129099194 + AT_rich Low_complexity Low_complexity 1 35 0 631 187 45 32 chr12 15183417 15183572 -129098917 + MER103 DNA DNA 1 157 -9 482 83 0 0 chr12 15183658 15183718 -129098771 + AluJb SINE Alu 79 138 -174 315 230 26 44 chr12 15184626 15184739 -129097750 - MER103 DNA DNA -43 123 13 1181 129 56 35 chr12 15185892 15186124 -129096365 + L1MA8 LINE L1 6051 6287 -4 2125 114 41 6 chr12 15186844 15187161 -129095328 - MLT2A1 LTR ERVL -10 434 107 1268 103 71 0 chr12 15187159 15187343 -129095146 - MLT2A2 LTR ERVL -256 197 1 * 12911 74 21 2 chr12 15187343 15189009 -129093480 - HERVL-A2 LTR ERVL 0 5654 3958 * 23974 89 10 3 chr12 15189005 15192730 -129089759 - HERVL-A2 LTR ERVL -1798 3856 1 275 152 0 0 chr12 15192732 15192781 -129089708 - MLT2A1 LTR ERVL -6 447 390 2581 102 32 25 chr12 15192830 15193231 -129089258 - MLT2A1 LTR ERVL -40 404 1 42413 89 11 1 chr12 15193231 15198829 -129083660 - HERVL-A1 LTR ERVL 0 5654 1 332 122 0 0 chr12 15198831 15198880 -129083609 - MLT2A1 LTR ERVL -6 438 390 287 200 0 0 chr12 15198883 15198953 -129083536 + L1MC4 LINE L1 6640 6709 -1333 347 149 39 61 chr12 15198965 15199146 -129083343 + (TA)n Simple_repeat Simple_repeat 1 177 0 2828 71 22 51 chr12 15199171 15199231 -129083258 - MLT2A1 LTR ERVL -45 399 339 2274 115 0 0 chr12 15199231 15199536 -129082953 + AluSx SINE Alu 1 305 -7 2828 71 22 51 chr12 15199536 15199886 -129082603 - MLT2A1 LTR ERVL -105 339 1 869 282 49 51 chr12 15200345 15200735 -129081754 - HAL1 LINE L1 -589 1918 1530 2292 102 3 0 chr12 15203432 15203726 -129078763 - AluSq SINE Alu -18 295 1 1206 110 6 0 chr12 15204254 15204418 -129078071 + AluSp SINE Alu 132 296 -17 22 56 0 0 chr12 15205285 15205321 -129077168 + AT_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr12 15206828 15206855 -129075634 + AT_rich Low_complexity Low_complexity 1 27 0 192 97 0 0 chr12 15207109 15207140 -129075349 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 23 0 0 0 chr12 15207202 15207225 -129075264 + AT_rich Low_complexity Low_complexity 1 23 0 219 69 0 0 chr12 15207369 15207398 -129075091 + (TG)n Simple_repeat Simple_repeat 2 30 0 495 201 144 33 chr12 15207878 15208095 -129074394 - MLT1J2 LTR MaLR -174 276 23 2214 113 0 0 chr12 15208638 15208930 -129073559 - AluSq SINE Alu -21 292 1 474 286 174 15 chr12 15209063 15209259 -129073230 + MIR SINE MIR 34 260 -2 21 0 0 0 chr12 15209687 15209708 -129072781 + AT_rich Low_complexity Low_complexity 1 21 0 486 228 296 0 chr12 15210025 15210187 -129072302 + MER63A DNA MER1_type 1 210 0 533 268 132 24 chr12 15210407 15210612 -129071877 - MIR SINE MIR -11 251 25 203 348 98 9 chr12 15212135 15212247 -129070242 + MIR SINE MIR 20 141 -67 665 294 69 10 chr12 15212758 15212962 -129069527 + MIR SINE MIR 26 241 -21 1750 183 0 3 chr12 15213067 15213367 -129069122 + AluSx SINE Alu 1 299 -13 307 253 85 69 chr12 15213373 15213527 -129068962 - MIR SINE MIR -58 150 42 311 315 75 34 chr12 15213626 15213772 -129068717 + MIR SINE MIR 91 242 -20 239 203 174 14 chr12 15214304 15214373 -129068116 + L2 LINE L2 2596 2675 -639 647 255 65 10 chr12 15214507 15214707 -129067782 - MER46C DNA MER2_type -1 337 127 1770 108 27 12 chr12 15214730 15214988 -129067501 + AluSx SINE Alu 35 296 -16 359 226 122 70 chr12 15215190 15215305 -129067184 - MIR SINE MIR -122 140 20 191 280 240 10 chr12 15215444 15215544 -129066945 + L2 LINE L2 3142 3264 -8 2091 129 7 0 chr12 15216733 15217028 -129065461 - AluSx SINE Alu -15 297 1 1220 206 21 4 chr12 15217368 15217606 -129064883 + MLT1A1 LTR MaLR 122 363 -2 317 205 98 36 chr12 15217609 15217721 -129064768 + MER113 DNA MER1_type? 8 126 -395 470 186 25 17 chr12 15217755 15217873 -129064616 - L1MA7 LINE L1 -3 6288 6170 365 221 165 25 chr12 15218140 15218298 -129064191 + MIR3 SINE MIR 23 202 -6 2580 50 0 0 chr12 15218361 15218659 -129063830 - AluY SINE Alu -13 298 1 209 310 17 0 chr12 15218684 15218742 -129063747 - MER91 DNA MER1_type 0 196 138 884 143 0 0 chr12 15219323 15219449 -129063040 - FLAM_C SINE Alu -3 130 5 1812 84 98 40 chr12 15220351 15220626 -129061863 + AluSx SINE Alu 1 291 -21 2389 89 0 0 chr12 15220629 15220932 -129061557 + AluSg SINE Alu 1 303 -7 223 262 214 29 chr12 15221022 15221125 -129061364 + MER5B DNA MER1_type 22 143 -35 2117 125 0 0 chr12 15221337 15221632 -129060857 + AluSx SINE Alu 1 295 -17 1765 161 7 7 chr12 15221723 15222028 -129060461 - AluJo SINE Alu -7 305 1 209 270 0 127 chr12 15222417 15222479 -129060010 + MIR SINE MIR 150 190 -72 2297 107 0 16 chr12 15222479 15222796 -129059693 + AluSx SINE Alu 1 312 0 209 270 0 127 chr12 15222796 15222859 -129059630 + MIR SINE MIR 190 259 -3 232 295 26 0 chr12 15223283 15223361 -129059128 - L2 LINE L2 -2 3311 3232 224 306 56 14 chr12 15223390 15223462 -129059027 - L2 LINE L2 -167 3105 3031 345 293 113 58 chr12 15223587 15223743 -129058746 + L1ME LINE L1 928 1074 -5873 2053 167 55 39 chr12 15223743 15223919 -129058570 + MLT1B LTR MaLR 1 173 -217 2247 107 3 0 chr12 15223919 15224218 -129058271 + AluY SINE Alu 1 300 -11 2053 167 55 39 chr12 15224218 15224425 -129058064 + MLT1B LTR MaLR 173 390 0 345 293 113 58 chr12 15224425 15224668 -129057821 + L1ME LINE L1 1074 1349 -5598 288 290 33 90 chr12 15224822 15225067 -129057422 + L1ME LINE L1 1207 1437 -5510 1818 305 20 49 chr12 15225068 15225767 -129056722 + L1MA6 LINE L1 4 682 -6486 3011 213 72 20 chr12 15226063 15226809 -129055680 + L1MA6 LINE L1 1762 2546 -4622 8464 164 30 6 chr12 15226810 15228378 -129054111 + L1MA6 LINE L1 4380 5984 -1183 4148 147 18 3 chr12 15228378 15229033 -129053456 + L1MA6 LINE L1 6652 7321 0 646 170 0 0 chr12 15229120 15229232 -129053257 + L1MA6 LINE L1 6093 6204 -96 327 200 0 0 chr12 15229229 15229289 -129053200 - L1MA6 LINE L1 -61 6239 6180 * 930 261 24 75 chr12 15229287 15229561 -129052928 + L1ME LINE L1 1396 1682 -5275 2151 122 3 0 chr12 15229561 15229894 -129052595 + AluSq SINE Alu 1 313 0 930 261 24 75 chr12 15229894 15230224 -129052265 + L1ME LINE L1 1682 2142 -4815 375 23 0 0 chr12 15230263 15230307 -129052182 + (CA)n Simple_repeat Simple_repeat 2 45 0 947 261 42 70 chr12 15230310 15230878 -129051611 + L1ME LINE L1 2579 3130 -4008 2355 95 3 0 chr12 15231271 15231575 -129050914 + AluSp SINE Alu 1 305 -8 2545 251 89 88 chr12 15232407 15233622 -129048867 + L1ME LINE L1 3082 4294 -2663 915 191 0 0 chr12 15233622 15233774 -129048715 + FRAM SINE Alu 1 145 -31 239 0 0 31 chr12 15233778 15233810 -129048679 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2545 251 89 88 chr12 15233810 15234518 -129047971 + L1ME LINE L1 4296 5166 -1791 1767 241 90 28 chr12 15234518 15235050 -129047439 + MLT1F1 LTR MaLR 1 565 -2 2545 251 89 88 chr12 15235050 15235271 -129047218 + L1ME LINE L1 5166 5385 -1572 212 0 36 0 chr12 15235575 15235603 -129046886 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1536 166 18 14 chr12 15236214 15236497 -129045992 - AluSx SINE Alu -15 297 14 1601 198 3 17 chr12 15238443 15238741 -129043748 + AluJo SINE Alu 1 294 -18 2451 58 3 0 chr12 15239114 15239408 -129043081 - AluY SINE Alu -2 309 15 293 267 89 10 chr12 15239784 15239885 -129042604 - L2 LINE L2 0 3313 3205 206 338 0 13 chr12 15239914 15239991 -129042498 + L2 LINE L2 3234 3309 -4 2021 134 0 10 chr12 15240594 15240899 -129041590 + AluSx SINE Alu 1 302 -10 2287 102 0 0 chr12 15241387 15241690 -129040799 + AluSx SINE Alu 1 303 -9 1074 201 53 5 chr12 15241869 15242078 -129040411 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr12 15242356 15242377 -129040112 + AT_rich Low_complexity Low_complexity 1 21 0 678 282 93 53 chr12 15242635 15242755 -129039734 - L1MC4a LINE L1 -1884 5924 5810 2104 112 3 3 chr12 15242755 15243074 -129039415 - AluSq SINE Alu 0 319 1 678 282 93 53 chr12 15243074 15243307 -129039182 - L1MC4a LINE L1 -1998 5810 5556 1949 130 18 0 chr12 15243324 15243625 -129038864 + AluSx SINE Alu 1 306 0 305 250 83 0 chr12 15243632 15243728 -129038761 - L1MC4a LINE L1 -2301 5507 5404 33 56 0 0 chr12 15243989 15244043 -129038446 + AT_rich Low_complexity Low_complexity 1 54 0 2113 140 0 0 chr12 15244084 15244377 -129038112 + AluSx SINE Alu 1 293 -19 236 186 82 52 chr12 15244409 15244506 -129037983 - L1MEd LINE L1 -4320 1809 1710 * 306 244 23 0 chr12 15244461 15244547 -129037942 + L1MC4 LINE L1 6615 6702 -1340 229 65 0 0 chr12 15244596 15244642 -129037847 - LTR66 LTR ERVL -171 439 394 232 48 48 0 chr12 15244671 15244713 -129037776 + (TA)n Simple_repeat Simple_repeat 1 44 0 1903 62 0 0 chr12 15247346 15247573 -129034916 + AluY SINE Alu 1 227 -84 23 33 0 0 chr12 15247576 15247606 -129034883 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr12 15247815 15247864 -129034625 + AT_rich Low_complexity Low_complexity 1 49 0 28 29 0 0 chr12 15247978 15248013 -129034476 + AT_rich Low_complexity Low_complexity 1 35 0 1903 132 7 30 chr12 15248018 15248322 -129034167 + AluSg SINE Alu 1 297 -13 440 319 86 41 chr12 15248420 15248765 -129033724 - L1MEd LINE L1 -790 1700 1372 2105 128 0 0 chr12 15248765 15249054 -129033435 - AluSx SINE Alu -23 289 1 440 319 86 41 chr12 15249054 15249570 -129032919 - L1MEd LINE L1 -1118 1372 689 225 132 0 0 chr12 15249585 15249623 -129032866 + (TC)n Simple_repeat Simple_repeat 2 39 0 1917 157 16 0 chr12 15250621 15250927 -129031562 + AluSx SINE Alu 1 311 -1 1049 209 47 14 chr12 15251114 15251325 -129031164 + MER20 DNA MER1_type 1 218 -1 2231 126 3 0 chr12 15251451 15251760 -129030729 - AluSx SINE Alu -2 310 1 387 0 0 0 chr12 15251761 15251804 -129030685 + (TG)n Simple_repeat Simple_repeat 2 44 0 236 403 104 13 chr12 15251995 15252149 -129030340 + MIR SINE MIR 2 169 -93 711 283 73 0 chr12 15252459 15252678 -129029811 + MIR SINE MIR 27 261 -1 2430 100 0 0 chr12 15252755 15253066 -129029423 + AluSx SINE Alu 1 311 -1 2161 114 3 0 chr12 15254250 15254548 -129027941 - AluSp SINE Alu -14 299 1 207 0 0 0 chr12 15254976 15254999 -129027490 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1166 168 10 20 chr12 15255126 15255178 -129027311 + AluJo SINE Alu 84 135 -171 2318 88 7 0 chr12 15255178 15255474 -129027015 + AluSp SINE Alu 1 298 -15 1166 168 10 20 chr12 15255474 15255646 -129026843 + AluJo SINE Alu 135 306 0 2111 117 7 0 chr12 15255663 15255953 -129026536 + AluSg SINE Alu 1 292 -18 823 182 0 8 chr12 15257200 15257332 -129025157 + AluJo SINE Alu 2 132 -180 950 160 21 0 chr12 15257462 15257606 -129024883 + AluJo SINE Alu 137 283 -19 1096 93 0 182 chr12 15258314 15258550 -129023939 - 7SK RNA RNA 0 193 1 294 292 52 0 chr12 15259060 15259156 -129023333 - L2 LINE L2 -6 3266 3166 205 331 160 14 chr12 15259156 15259443 -129023046 + L2 LINE L2 1776 2104 -1210 2061 106 3 3 chr12 15259837 15260147 -129022342 + AluSp SINE Alu 2 311 0 506 325 159 31 chr12 15260167 15260582 -129021907 + L2 LINE L2 2804 3271 -1 358 257 62 28 chr12 15260723 15260867 -129021622 - L2 LINE L2 -832 2482 2334 1218 144 6 0 chr12 15260958 15261138 -129021351 - AluSg/x SINE Alu -20 290 110 202 331 8 87 chr12 15261542 15261669 -129020820 + L2 LINE L2 3136 3252 -20 24 53 0 0 chr12 15261753 15261791 -129020698 + AT_rich Low_complexity Low_complexity 1 38 0 1514 163 4 4 chr12 15261812 15262070 -129020419 - AluSq SINE Alu -53 260 3 729 300 57 12 chr12 15262219 15262625 -129019864 + L1ME2 LINE L1 5422 5853 -311 1933 88 19 0 chr12 15262932 15263195 -129019294 - AluY SINE Alu -22 289 22 270 170 4 178 chr12 15263528 15263787 -129018702 + L1MA3 LINE L1 5837 6050 -255 957 89 0 0 chr12 15263916 15264039 -129018450 - AluSp SINE Alu -190 123 1 2172 111 3 16 chr12 15264073 15264380 -129018109 + AluSp SINE Alu 1 303 -10 5432 106 20 30 chr12 15264391 15265220 -129017269 + L1PA13 LINE L1 5343 6163 0 1603 113 0 0 chr12 15265202 15265431 -129017058 + L1P4 LINE L1 5594 5822 -346 * 203 0 37 0 chr12 15266688 15266715 -129015774 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 755 156 0 0 chr12 15266715 15266824 -129015665 - FRAM SINE Alu -28 148 40 28 0 0 0 chr12 15267171 15267199 -129015290 + AT_rich Low_complexity Low_complexity 1 28 0 2382 84 3 10 chr12 15267219 15267530 -129014959 - AluSp SINE Alu -4 309 1 283 256 91 16 chr12 15268136 15268257 -129014232 - LTR16C LTR ERVL -63 428 299 2237 98 3 7 chr12 15268929 15269226 -129013263 - AluSp SINE Alu -17 296 1 2059 135 3 7 chr12 15269547 15269850 -129012639 + AluSx SINE Alu 1 302 -10 1992 146 7 0 chr12 15270608 15270909 -129011580 + AluSx SINE Alu 1 303 -9 580 294 25 0 chr12 15271038 15271198 -129011291 - MIR SINE MIR -79 183 20 1003 214 159 31 chr12 15271327 15271584 -129010905 + AluJo SINE Alu 1 290 -12 1922 113 4 0 chr12 15272556 15272813 -129009676 + AluSx SINE Alu 3 260 -52 186 73 36 73 chr12 15272816 15272871 -129009618 + (TAAAAA)n Simple_repeat Simple_repeat 3 55 0 205 331 8 87 chr12 15272956 15273083 -129009406 - L2 LINE L2 -20 3252 3136 207 0 0 0 chr12 15273942 15273965 -129008524 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 270 260 125 10 chr12 15274056 15274160 -129008329 + MIR SINE MIR 60 175 -87 23 0 0 0 chr12 15274160 15274183 -129008306 + AT_rich Low_complexity Low_complexity 1 23 0 2050 112 3 0 chr12 15274185 15274481 -129008008 + AluSx SINE Alu 2 298 -14 21 36 0 0 chr12 15274915 15274943 -129007546 + GC_rich Low_complexity Low_complexity 1 28 0 234 192 0 0 chr12 15274983 15275035 -129007454 + (CAG)n Simple_repeat Simple_repeat 1 52 0 21 36 0 0 chr12 15275035 15275063 -129007426 + GC_rich Low_complexity Low_complexity 1 28 0 2352 49 7 0 chr12 15275967 15276277 -129006212 + AluY SINE Alu 1 312 0 643 193 0 0 chr12 15276594 15276708 -129005781 + FLAM_C SINE Alu 3 116 -17 23 0 0 0 chr12 15276708 15276731 -129005758 + AT_rich Low_complexity Low_complexity 1 23 0 392 162 190 92 chr12 15277170 15277312 -129005177 - L2 LINE L2 0 3313 3158 831 123 198 27 chr12 15277317 15277504 -129004985 - MER20 DNA MER1_type 0 219 1 2811 92 2 8 chr12 15277590 15278184 -129004305 + MER4A LTR ERV1 7 664 0 2145 129 0 3 chr12 15278526 15278828 -129003661 + AluSx SINE Alu 5 305 -7 252 285 31 23 chr12 15278884 15279014 -129003475 + HERVL LTR ERVL 5206 5336 -318 873 117 8 16 chr12 15279181 15279309 -129003180 - FLAM_C SINE Alu -3 140 14 642 278 16 21 chr12 15279621 15279815 -129002674 - MLT1J2 LTR MaLR 0 450 258 555 180 31 23 chr12 15279815 15279943 -129002546 - MER119 DNA MER1_type 0 583 455 225 264 97 0 chr12 15279944 15280016 -129002473 - MER119 DNA MER1_type -449 134 56 25 31 0 0 chr12 15280191 15280223 -129002266 + AT_rich Low_complexity Low_complexity 1 32 0 2004 116 7 27 chr12 15280223 15280515 -129001974 - AluSx SINE Alu -26 286 1 281 252 19 84 chr12 15280531 15280686 -129001803 - MLT1J LTR MaLR -305 180 1 2140 118 0 0 chr12 15281468 15281776 -129000713 + AluSg SINE Alu 3 310 0 757 163 0 16 chr12 15281916 15282045 -129000444 + FLAM_C SINE Alu 1 127 -6 1532 184 7 39 chr12 15283086 15283202 -128999287 + AluJo SINE Alu 1 119 -193 186 43 0 0 chr12 15283202 15283225 -128999264 + (CA)n Simple_repeat Simple_repeat 2 24 0 1532 184 7 39 chr12 15283225 15283417 -128999072 + AluJo SINE Alu 119 299 -13 468 250 19 0 chr12 15284284 15284388 -128998101 + MER45 DNA AcHobo 3 108 -932 660 210 48 0 chr12 15284388 15284512 -128997977 - AluJb SINE Alu -52 260 131 285 102 0 0 chr12 15284547 15284596 -128997893 + Alu SINE Alu 253 301 0 2044 101 49 7 chr12 15285093 15285244 -128997245 - AluSg SINE Alu -10 300 157 180 0 0 0 chr12 15285244 15285264 -128997225 + (TA)n Simple_repeat Simple_repeat 1 20 0 2044 101 49 7 chr12 15285264 15285400 -128997089 - AluSg SINE Alu -153 157 1 2011 127 25 0 chr12 15285771 15286055 -128996434 + AluSx SINE Alu 1 291 -21 24 0 0 0 chr12 15286055 15286079 -128996410 + AT_rich Low_complexity Low_complexity 1 24 0 624 152 0 0 chr12 15286291 15286396 -128996093 + FRAM SINE Alu 68 172 -4 646 165 0 0 chr12 15286699 15286796 -128995693 - FLAM_A SINE Alu -44 98 2 25 0 0 0 chr12 15286841 15286866 -128995623 + AT_rich Low_complexity Low_complexity 1 25 0 2035 117 43 0 chr12 15286936 15287218 -128995271 - AluSx SINE Alu -18 294 1 1989 121 13 48 chr12 15287218 15287396 -128995093 - AluSx SINE Alu -9 303 139 1887 124 10 14 chr12 15287396 15287686 -128994803 - AluSq SINE Alu -24 289 1 1989 121 13 48 chr12 15287686 15287821 -128994668 - AluSx SINE Alu -173 139 1 640 179 60 7 chr12 15287873 15288024 -128994465 + MER76 LTR ERV 530 688 0 22 0 0 0 chr12 15288060 15288082 -128994407 + AT_rich Low_complexity Low_complexity 1 22 0 346 351 123 32 chr12 15288088 15288339 -128994150 - L2 LINE L2 -5 3267 2994 16372 126 43 55 chr12 15288429 15288901 -128993588 - Tigger3(Golem) DNA MER2_type 0 3029 2553 1911 125 36 4 chr12 15288901 15289180 -128993309 + AluSq SINE Alu 1 288 -25 207 0 0 0 chr12 15289183 15289206 -128993283 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 16372 126 43 55 chr12 15289206 15289717 -128992772 - Tigger3(Golem) DNA MER2_type -478 2551 2036 2184 118 0 3 chr12 15289717 15290021 -128992468 - AluSq SINE Alu -10 303 1 16372 126 43 55 chr12 15290021 15290770 -128991719 - Tigger3(Golem) DNA MER2_type -993 2036 1280 2120 113 30 3 chr12 15290770 15291070 -128991419 - AluSq SINE Alu -5 308 1 16372 126 43 55 chr12 15291070 15291461 -128991028 - Tigger3(Golem) DNA MER2_type -1749 1280 886 2168 111 3 0 chr12 15291461 15291750 -128990739 - AluSp SINE Alu -23 290 1 16372 126 43 55 chr12 15291750 15292340 -128990149 - Tigger3(Golem) DNA MER2_type -2143 886 347 2230 102 0 0 chr12 15292340 15292625 -128989864 - AluSx SINE Alu -27 285 1 16372 126 43 55 chr12 15292625 15292968 -128989521 - Tigger3(Golem) DNA MER2_type -2682 347 1 279 246 15 15 chr12 15292975 15293040 -128989449 - MER2 DNA MER2_type -1 344 280 1007 150 10 45 chr12 15293066 15293266 -128989223 - MER2 DNA MER2_type -134 211 19 305 276 46 0 chr12 15293289 15293376 -128989113 - L1MC4 LINE L1 -1339 6703 6613 264 234 0 0 chr12 15293377 15293441 -128989048 + (TA)n Simple_repeat Simple_repeat 2 65 0 310 221 0 63 chr12 15293448 15293543 -128988946 - L1MC4 LINE L1 -1340 6702 6614 282 292 0 0 chr12 15293549 15293727 -128988762 + (TA)n Simple_repeat Simple_repeat 2 179 0 314 276 46 0 chr12 15293733 15293820 -128988669 - L1MC4 LINE L1 -1339 6703 6613 347 262 37 19 chr12 15293851 15293958 -128988531 - L1MC4 LINE L1 -1339 6703 6595 363 241 46 0 chr12 15293999 15294086 -128988403 - L1MC4 LINE L1 -1339 6703 6613 261 226 26 0 chr12 15294089 15294204 -128988285 + (TA)n Simple_repeat Simple_repeat 1 118 0 2023 134 3 0 chr12 15294341 15294652 -128987837 + AluSx SINE Alu 1 312 0 1020 156 0 0 chr12 15294962 15295122 -128987367 - AluSg/x SINE Alu -13 299 140 1819 168 7 0 chr12 15295482 15295768 -128986721 - AluJb SINE Alu -24 288 1 707 176 0 16 chr12 15295782 15295907 -128986582 - FLAM_C SINE Alu -9 134 12 5656 142 100 40 chr12 15296043 15297248 -128985241 - MER52C LTR ERV1 0 1278 1 2004 103 0 0 chr12 15297493 15297755 -128984734 + AluSx SINE Alu 35 296 -16 187 211 0 0 chr12 15298390 15298428 -128984061 + MER5C DNA MER1_type 87 124 -200 312 168 84 42 chr12 15298451 15298546 -128983943 + MER5C DNA MER1_type 226 324 0 2162 101 10 3 chr12 15298558 15298855 -128983634 - AluSc SINE Alu -10 299 1 21 0 0 0 chr12 15299390 15299411 -128983078 + AT_rich Low_complexity Low_complexity 1 21 0 301 281 39 51 chr12 15299787 15300043 -128982446 - HAL1 LINE L1 -10 2497 2245 398 205 0 0 chr12 15300212 15300290 -128982199 - L1MD3 LINE L1 -348 7647 7570 1799 103 22 7 chr12 15300293 15300565 -128981924 - L1PA13 LINE L1 -3 6811 6536 18511 175 17 25 chr12 15300567 15300779 -128981710 - L1PA13 LINE L1 -458 6354 6142 2026 148 6 3 chr12 15300779 15301090 -128981399 - AluSx SINE Alu 0 312 1 18511 175 17 25 chr12 15301090 15301561 -128980928 - L1PA13 LINE L1 -670 6142 5669 2163 120 0 10 chr12 15301561 15301869 -128980620 + AluSx SINE Alu 1 305 -7 18511 175 17 25 chr12 15301869 15302453 -128980036 - L1PA13 LINE L1 -1143 5669 5082 2072 140 14 0 chr12 15302453 15302745 -128979744 - AluSx SINE Alu -16 296 1 18511 175 17 25 chr12 15302745 15306057 -128976432 - L1PA13 LINE L1 -1730 5082 1817 2294 125 0 0 chr12 15306057 15306361 -128976128 - AluSx SINE Alu 0 312 9 18511 175 17 25 chr12 15306361 15306429 -128976060 - L1PA13 LINE L1 -4995 1817 1750 1499 151 34 0 chr12 15306424 15306662 -128975827 - L1PA13 LINE L1 -6540 247 2 * 3366 233 60 42 chr12 15306673 15307348 -128975141 - L1MC4a LINE L1 -404 7404 6742 1650 154 39 51 chr12 15307348 15307660 -128974829 + AluJb SINE Alu 1 308 -4 3366 233 60 42 chr12 15307660 15308360 -128974129 - L1MC4a LINE L1 -1066 6742 6035 1844 180 0 10 chr12 15308360 15308671 -128973818 - AluJb SINE Alu -2 310 3 3366 233 60 42 chr12 15308671 15308873 -128973616 - L1MC4a LINE L1 -1773 6035 5838 6332 213 70 8 chr12 15308896 15311262 -128971227 - L1MA4 LINE L1 -5 6295 3602 183 42 0 0 chr12 15311262 15311286 -128971203 + (TGG)n Simple_repeat Simple_repeat 3 26 0 6332 213 70 8 chr12 15311286 15312050 -128970439 - L1MA4 LINE L1 -2698 3602 2887 1072 282 59 14 chr12 15312050 15312540 -128969949 - L1ME1 LINE L1 -316 6244 5733 830 249 76 30 chr12 15312629 15313149 -128969340 - L1ME1 LINE L1 -4467 2136 1446 * 993 180 15 0 chr12 15313148 15313354 -128969135 - L1 LINE L1 -1193 4953 4745 315 265 42 21 chr12 15313353 15313542 -128968947 - L1ME1 LINE L1 -4954 1586 1394 * 1062 135 11 0 chr12 15313568 15313753 -128968736 - L1M2 LINE L1 -691 7028 6842 12588 197 40 58 chr12 15313786 15313933 -128968556 - L1M2 LINE L1 -746 6819 6671 243 0 0 0 chr12 15313933 15313960 -128968529 + (TG)n Simple_repeat Simple_repeat 2 28 0 12588 197 40 58 chr12 15313960 15317204 -128965285 - L1M2 LINE L1 -894 6671 3783 2284 123 3 0 chr12 15317204 15317506 -128964983 - AluSx SINE Alu -9 303 1 12588 197 40 58 chr12 15317506 15319061 -128963428 - L1M2 LINE L1 -3782 3783 2202 399 412 15 0 chr12 15319328 15319600 -128962889 - L1M2 LINE L1 -5797 1699 1424 191 288 119 0 chr12 15320751 15320810 -128961679 - L2 LINE L2 -49 3223 3158 210 176 40 14 chr12 15322937 15323011 -128959478 + (TA)n Simple_repeat Simple_repeat 2 77 0 429 322 47 6 chr12 15323376 15323547 -128958942 - MER5A DNA MER1_type -1 188 11 1967 161 77 20 chr12 15324246 15324649 -128957840 + MSTB LTR MaLR 1 426 0 203 327 73 74 chr12 15325058 15325321 -128957168 - MIR3 SINE MIR 0 262 1 1588 192 7 33 chr12 15325572 15325879 -128956610 + AluJo SINE Alu 1 299 -13 1689 173 0 0 chr12 15325904 15326176 -128956313 + AluJo SINE Alu 37 308 -4 886 208 126 95 chr12 15327488 15327877 -128954612 + MER57B LTR ERV1 3 434 0 532 305 40 30 chr12 15330380 15330580 -128951909 - MIR3 SINE MIR 0 208 7 1914 154 133 13 chr12 15330959 15331341 -128951148 + MSTA LTR MaLR 1 428 0 2371 95 0 0 chr12 15331508 15331804 -128950685 + AluSq SINE Alu 1 296 -17 31 0 0 0 chr12 15331804 15331835 -128950654 + AT_rich Low_complexity Low_complexity 1 31 0 268 237 87 11 chr12 15332541 15332636 -128949853 + MIR SINE MIR 5 106 -102 2286 89 0 20 chr12 15332677 15332981 -128949508 - AluY SINE Alu -12 299 2 375 253 53 21 chr12 15333256 15333409 -128949080 + L1ME LINE L1 5244 5403 -743 1959 113 67 0 chr12 15333409 15333691 -128948798 + AluSx SINE Alu 3 303 -9 578 255 80 12 chr12 15333771 15334022 -128948467 + L1ME LINE L1 5537 5804 -317 330 249 6 133 chr12 15334579 15334744 -128947745 + MER5A DNA MER1_type 18 161 -28 202 270 6 126 chr12 15334597 15334771 -128947718 - MER5A DNA MER1_type -19 170 18 * 845 189 35 0 chr12 15334852 15335021 -128947468 + MER5B DNA MER1_type 1 175 -3 539 321 64 5 chr12 15335285 15335472 -128947017 - MIR3 SINE MIR -7 201 4 205 311 160 8 chr12 15335643 15335762 -128946727 + MER5A DNA MER1_type 43 179 -10 4434 63 51 5 chr12 15336412 15337019 -128945470 + PABL_A LTR ERV1 26 660 0 308 245 19 38 chr12 15337076 15337182 -128945307 - MER5B DNA MER1_type -3 175 72 589 149 9 0 chr12 15337191 15337298 -128945191 + MER53 DNA DNA 1 108 -81 194 224 52 35 chr12 15337302 15337360 -128945129 - MER5B DNA MER1_type -113 65 7 1926 171 9 6 chr12 15337736 15338076 -128944413 - MER2 DNA MER2_type -2 342 2 7654 23 11 0 chr12 15338580 15339712 -128942777 - L1PA3 LINE L1 0 6155 5019 14291 154 39 17 chr12 15340029 15344156 -128938333 + L1MA4A LINE L1 841 5139 -1866 2110 105 0 14 chr12 15344156 15344451 -128938038 + AluSx SINE Alu 1 291 -21 14291 154 39 17 chr12 15344451 15346338 -128936151 + L1MA4A LINE L1 5139 6983 -22 2151 106 0 26 chr12 15346359 15346671 -128935818 + AluSx SINE Alu 1 304 -8 1261 238 139 26 chr12 15346742 15347195 -128935294 + MLT1D LTR MaLR 1 504 -1 1886 143 19 19 chr12 15347534 15347842 -128934647 + AluJb SINE Alu 5 312 0 209 300 62 25 chr12 15347946 15348026 -128934463 + L2 LINE L2 3189 3271 -1 208 296 19 0 chr12 15348867 15348921 -128933568 + L2 LINE L2 3255 3309 -4 2276 103 0 0 chr12 15349006 15349297 -128933192 + AluSg SINE Alu 1 291 -19 35 0 0 0 chr12 15349315 15349350 -128933139 + AT_rich Low_complexity Low_complexity 1 35 0 365 303 0 0 chr12 15350558 15350647 -128931842 + MIR3 SINE MIR 113 201 -7 187 290 129 32 chr12 15351349 15351442 -128931047 + MIR SINE MIR 59 160 -102 1080 106 0 95 chr12 15351558 15351737 -128930752 + AluSg/x SINE Alu 143 304 -8 1076 146 12 0 chr12 15352090 15352255 -128930234 - AluSg/x SINE Alu -9 303 137 534 176 77 94 chr12 15352351 15352521 -128929968 - MIR SINE MIR 0 262 96 1986 134 0 0 chr12 15353174 15353485 -128929004 - AluSx SINE Alu 0 311 1 241 211 101 9 chr12 15353982 15354091 -128928398 - L1ME4a LINE L1 -125 5996 5878 246 293 236 28 chr12 15354118 15354436 -128928053 - L2 LINE L2 0 3313 2930 368 192 85 67 chr12 15354806 15354984 -128927505 + MER63 DNA MER1_type 27 1061 0 21 36 0 0 chr12 15355089 15355117 -128927372 + AT_rich Low_complexity Low_complexity 1 28 0 395 261 57 90 chr12 15355186 15355292 -128927197 - L1M4 LINE L1 -1820 4326 4218 2062 113 0 3 chr12 15355292 15355609 -128926880 - AluSg SINE Alu 0 316 1 395 261 57 90 chr12 15355609 15355648 -128926841 - L1M4 LINE L1 -1928 4218 4179 2293 138 43 36 chr12 15355648 15356090 -128926399 + MER65A LTR ERV1 1 445 0 395 261 57 90 chr12 15356090 15356153 -128926336 - L1M4 LINE L1 -1967 4179 4123 299 333 54 0 chr12 15356399 15356510 -128925979 + L2 LINE L2 2958 3074 -239 405 269 145 16 chr12 15356830 15357023 -128925466 + L1M4 LINE L1 3693 3910 -2236 21 0 0 0 chr12 15357242 15357263 -128925226 + AT_rich Low_complexity Low_complexity 1 21 0 2277 99 0 0 chr12 15357603 15357895 -128924594 - AluSc SINE Alu -17 292 1 336 215 83 83 chr12 15359446 15359506 -128922983 + L2 LINE L2 3170 3229 -84 2069 136 0 7 chr12 15359506 15359824 -128922665 - AluSx SINE Alu 0 312 1 336 215 83 83 chr12 15359824 15359907 -128922582 + L2 LINE L2 3228 3313 0 243 192 19 0 chr12 15359907 15359959 -128922530 + GA-rich Low_complexity Low_complexity 1 53 0 346 301 16 72 chr12 15360817 15361010 -128921479 - Charlie8 DNA MER1_type -2235 182 1 188 388 41 0 chr12 15361101 15361199 -128921290 + MIR SINE MIR 160 261 -1 858 250 130 61 chr12 15362196 15362572 -128919917 + MER57A LTR ERV1 1 403 0 364 224 60 17 chr12 15363255 15363371 -128919118 + MIR SINE MIR 72 192 -70 1902 121 80 3 chr12 15364172 15364485 -128918004 - MER1B DNA MER1_type 0 337 1 2026 114 59 31 chr12 15364845 15365169 -128917320 + MER1B DNA MER1_type 5 337 0 395 300 53 60 chr12 15365177 15365557 -128916932 - L1ME LINE L1 -524 5638 5262 369 291 137 11 chr12 15365558 15365740 -128916749 - L1ME LINE L1 -885 5261 5057 1973 146 3 0 chr12 15365744 15366038 -128916451 + AluSx SINE Alu 1 295 -17 206 103 0 26 chr12 15366193 15366232 -128916257 + (TATAA)n Simple_repeat Simple_repeat 5 42 0 2307 93 7 3 chr12 15366392 15366692 -128915797 - AluSg SINE Alu -9 301 1 549 317 35 25 chr12 15367711 15367913 -128914576 + MIR3 SINE MIR 2 205 -3 376 262 0 99 chr12 15368024 15368172 -128914317 - MIR SINE MIR -72 136 3 28 0 0 0 chr12 15368514 15368542 -128913947 + AT_rich Low_complexity Low_complexity 1 28 0 2029 138 21 0 chr12 15368791 15369082 -128913407 - AluSx SINE Alu -15 297 1 2247 98 7 7 chr12 15369743 15370048 -128912441 + AluSx SINE Alu 1 305 -7 260 217 70 26 chr12 15370418 15370533 -128911956 + HAL1 LINE L1 2240 2359 -148 2224 109 3 3 chr12 15370630 15370932 -128911557 - AluSq SINE Alu -11 302 1 205 254 73 91 chr12 15371048 15371158 -128911331 + L2 LINE L2 3189 3296 -17 210 286 0 0 chr12 15371586 15371635 -128910854 + (CCA)n Simple_repeat Simple_repeat 1 49 0 33 43 0 0 chr12 15371828 15371875 -128910614 + AT_rich Low_complexity Low_complexity 1 47 0 215 343 97 22 chr12 15372040 15372174 -128910315 - MIR3 SINE MIR -11 197 54 321 26 0 0 chr12 15372197 15372235 -128910254 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 2228 93 0 13 chr12 15372285 15372587 -128909902 + AluSg SINE Alu 5 302 -8 273 346 127 16 chr12 15372596 15373012 -128909477 - L2 LINE L2 -240 3032 2575 * 333 258 113 21 chr12 15373002 15373099 -128909390 + L2 LINE L2 3207 3312 -1 2217 204 27 94 chr12 15373218 15373802 -128908687 - LTR9 LTR ERV1 0 612 75 2241 108 0 6 chr12 15373802 15374116 -128908373 + AluSx SINE Alu 1 312 0 2217 204 27 94 chr12 15374116 15374187 -128908302 - LTR9 LTR ERV1 -537 75 1 544 16 0 0 chr12 15374348 15374409 -128908080 + L1P1 LINE L1 5519 5579 -576 810 221 139 13 chr12 15375041 15375344 -128907145 - L1ME4a LINE L1 -5 6116 5776 1917 142 6 55 chr12 15375344 15375533 -128906956 - AluJo SINE Alu -3 309 141 2241 105 0 0 chr12 15375533 15375818 -128906671 - AluSg SINE Alu -25 285 1 1917 142 6 55 chr12 15375818 15375953 -128906536 - AluJo SINE Alu -171 141 1 1884 166 3 34 chr12 15376545 15376865 -128905624 - AluJb SINE Alu -2 310 1 237 284 45 11 chr12 15377447 15377535 -128904954 - MIR3 SINE MIR -33 175 85 1879 106 31 7 chr12 15377866 15378158 -128904331 + THE1A LTR MaLR 1 299 -56 2386 78 10 0 chr12 15378188 15378494 -128903995 - THE1A LTR MaLR -46 309 1 1710 116 0 0 chr12 15378562 15378787 -128903702 - AluSx SINE Alu -87 225 1 268 333 7 41 chr12 15380634 15380781 -128901708 + MIR SINE MIR 7 148 -114 492 270 81 27 chr12 15380841 15381026 -128901463 - MIR SINE MIR -1 261 67 2181 110 13 7 chr12 15382277 15382587 -128899902 + AluSx SINE Alu 1 312 0 239 250 18 0 chr12 15383672 15383728 -128898761 + MER94 DNA DNA 78 134 0 31 44 0 0 chr12 15384152 15384197 -128898292 + AT_rich Low_complexity Low_complexity 1 45 0 321 260 77 10 chr12 15384756 15384860 -128897629 + L2 LINE L2 3181 3291 -22 2303 99 0 28 chr12 15384907 15385229 -128897260 - AluSq SINE Alu 0 313 1 794 194 0 8 chr12 15385340 15385464 -128897025 - FLAM_A SINE Alu -10 123 1 368 307 45 40 chr12 15385464 15385666 -128896823 - MIR SINE MIR -11 251 49 884 163 0 15 chr12 15386580 15386715 -128895774 - FLAM_C SINE Alu 0 133 1 292 248 158 65 chr12 15387264 15387446 -128895043 - MIR3 SINE MIR -1 207 2 1032 81 0 7 chr12 15388022 15388158 -128894331 - L1PB1 LINE L1 -2 6149 6015 2405 119 5 39 chr12 15389525 15389911 -128892578 + THE1C LTR MaLR 1 373 -2 222 171 24 0 chr12 15390773 15390814 -128891675 - L2 LINE L2 -8 3264 3223 * 234 208 21 0 chr12 15390780 15390828 -128891661 - MIR SINE MIR -10 252 204 217 257 135 14 chr12 15391003 15391077 -128891412 + L2 LINE L2 3189 3271 -1 656 114 0 50 chr12 15391873 15392013 -128890476 + (TTCC)n Simple_repeat Simple_repeat 1 133 0 1457 204 6 22 chr12 15392013 15392326 -128890163 - AluJo SINE Alu -4 308 1 185 275 100 38 chr12 15392420 15392500 -128889989 + L2 LINE L2 3170 3254 -18 214 198 81 47 chr12 15393018 15393104 -128889385 - MIR SINE MIR -39 223 135 188 288 0 15 chr12 15394562 15394628 -128887861 + MER5A DNA MER1_type 97 161 -28 1950 153 3 3 chr12 15394687 15394987 -128887502 + AluJb SINE Alu 1 300 -12 183 188 0 0 chr12 15395578 15395626 -128886863 + CT-rich Low_complexity Low_complexity 1 48 0 571 221 0 15 chr12 15395626 15395757 -128886732 - L1MB7 LINE L1 -10 6174 6046 252 216 0 0 chr12 15395948 15395999 -128886490 - MIR SINE MIR -6 256 206 1705 271 104 12 chr12 15396071 15396792 -128885697 - L2 LINE L2 -239 3074 2281 2417 84 3 0 chr12 15397882 15398190 -128884299 - AluY SINE Alu -2 309 1 285 309 36 18 chr12 15398222 15398332 -128884157 + MIR SINE MIR 35 146 -62 267 198 86 49 chr12 15399123 15399204 -128883285 + MIR3 SINE MIR 84 167 -41 * 671 282 19 19 chr12 15399195 15399408 -128883081 - MIR SINE MIR -18 244 32 2011 192 54 54 chr12 15399427 15399915 -128882574 + Charlie1b DNA MER1_type 1 491 -2270 2338 102 0 3 chr12 15399915 15400218 -128882271 + AluSp SINE Alu 1 302 -11 2011 192 54 54 chr12 15400218 15400251 -128882238 + Charlie1b DNA MER1_type 490 522 -1 381 324 22 7 chr12 15401120 15401256 -128881233 - MIR SINE MIR -119 143 6 216 274 16 0 chr12 15401288 15401350 -128881139 + (CAA)n Simple_repeat Simple_repeat 2 64 0 500 331 28 12 chr12 15401350 15401604 -128880885 - MIR SINE MIR -3 259 2 216 326 188 7 chr12 15401685 15401829 -128880660 + MIR SINE MIR 81 250 -12 208 382 65 8 chr12 15401827 15401950 -128880539 - MIR3 SINE MIR -76 132 3 * 21 0 0 0 chr12 15402646 15402667 -128879822 + AT_rich Low_complexity Low_complexity 1 21 0 1687 61 0 0 chr12 15402773 15402970 -128879519 + AluY SINE Alu 105 301 -10 832 174 8 0 chr12 15403174 15403306 -128879183 - FLAM_C SINE Alu 0 133 1 955 56 0 31 chr12 15404270 15404431 -128878058 + (TA)n Simple_repeat Simple_repeat 1 156 0 7562 51 10 0 chr12 15404431 15405361 -128877128 - L1PA7 LINE L1 -19 6135 5204 2487 57 0 25 chr12 15405498 15405850 -128876639 - AluY SINE Alu 0 345 2 571 311 83 14 chr12 15405972 15406435 -128876054 - L2 LINE L2 -199 3073 2561 347 89 0 54 chr12 15406465 15406521 -128875968 + FLAM_A SINE Alu 80 132 -1 1672 181 0 30 chr12 15406523 15406826 -128875663 + AluJo SINE Alu 1 294 -18 347 326 144 6 chr12 15406840 15407021 -128875468 - L2 LINE L2 -786 2528 2323 327 357 67 8 chr12 15407676 15407914 -128874575 - L2 LINE L2 -2532 782 531 22 0 0 0 chr12 15407929 15407951 -128874538 + AT_rich Low_complexity Low_complexity 1 22 0 186 339 16 16 chr12 15408566 15408628 -128873861 - MIR SINE MIR -131 77 16 1207 193 10 82 chr12 15409021 15409326 -128873163 + MLT1A2 LTR MaLR 2 284 -90 476 139 0 47 chr12 15409595 15409681 -128872808 + MLT1A2 LTR MaLR 284 365 0 2266 120 0 3 chr12 15409728 15410036 -128872453 + AluSx SINE Alu 1 307 -5 2347 79 6 13 chr12 15410721 15411036 -128871453 + AluSq SINE Alu 1 313 0 21 0 0 0 chr12 15411197 15411218 -128871271 + AT_rich Low_complexity Low_complexity 1 21 0 519 183 0 0 chr12 15411358 15411440 -128871049 + AluJ/FLAM SINE Alu 6 87 -225 2380 81 0 0 chr12 15411644 15411951 -128870538 + AluY SINE Alu 1 307 -4 326 269 157 0 chr12 15412018 15412126 -128870363 - L2 LINE L2 -1 3312 3188 2494 152 34 7 chr12 15412360 15412767 -128869722 - MSTB LTR MaLR 0 426 9 3591 44 0 70 chr12 15412770 15413252 -128869237 - LTR7 LTR ERV1 -2 448 1 2449 84 50 16 chr12 15413252 15413631 -128868858 - HERVH LTR ERV1 0 7713 7322 1364 119 20 0 chr12 15413629 15413830 -128868659 - HERVH LTR ERV1 -1894 5819 5615 * 2504 175 0 2 chr12 15413858 15414269 -128868220 - HERVH LTR ERV1 -2564 5149 4740 999 149 0 7 chr12 15414268 15414422 -128868067 - HERVH LTR ERV1 -4069 3644 3492 * 874 131 41 0 chr12 15414412 15414557 -128867932 - HERVH LTR ERV1 -4423 3290 3140 * 20819 88 21 13 chr12 15414536 15417506 -128864983 - HERVH LTR ERV1 -4718 2995 1 3629 39 0 70 chr12 15417508 15417990 -128864499 - LTR7 LTR ERV1 -2 448 1 287 337 0 11 chr12 15418877 15418972 -128863517 + MIR SINE MIR 48 141 -121 218 160 0 100 chr12 15419587 15419637 -128862852 + MIR SINE MIR 218 262 0 2690 62 103 0 chr12 15420321 15420660 -128861829 + MER51B LTR ERV1 4 377 0 1880 229 31 84 chr12 15421646 15422288 -128860201 - LTR9 LTR ERV1 0 612 5 473 173 135 0 chr12 15422410 15422514 -128859975 - Charlie1a DNA MER1_type -912 543 426 438 157 10 59 chr12 15422519 15422586 -128859903 - Charlie1a DNA MER1_type -2524 237 175 4796 80 23 42 chr12 15422586 15422724 -128859765 - LTR30 LTR ERV1 0 722 583 2489 54 0 10 chr12 15422724 15423038 -128859451 + AluY SINE Alu 1 311 0 4796 80 23 42 chr12 15423038 15423635 -128858854 - LTR30 LTR ERV1 -139 583 1 438 157 10 59 chr12 15423635 15423669 -128858820 - Charlie1a DNA MER1_type -2586 175 141 1625 132 16 76 chr12 15423669 15424034 -128858455 - MER4A LTR ERV1 0 664 263 517 111 89 0 chr12 15424034 15424124 -128858365 - MER4A LTR ERV1 -566 98 1 452 252 54 34 chr12 15424124 15424260 -128858229 - Charlie1a DNA MER1_type -1315 140 2 501 281 278 7 chr12 15424344 15424646 -128857843 + L2 LINE L2 2930 3313 0 678 257 47 100 chr12 15424990 15425716 -128856773 - L1M4 LINE L1 -1571 4575 3923 2015 134 0 17 chr12 15425716 15426015 -128856474 - AluSx SINE Alu -14 298 5 678 257 47 100 chr12 15426015 15426365 -128856124 - L1M4 LINE L1 -2223 3923 3556 438 256 98 42 chr12 15426371 15426586 -128855903 + L1M4 LINE L1 5079 5305 -841 353 253 23 75 chr12 15426747 15426791 -128855698 - L1MC/D LINE L1 -2262 5940 5895 1722 166 48 20 chr12 15426791 15427086 -128855403 - AluJo SINE Alu -9 303 1 353 253 23 75 chr12 15427086 15427215 -128855274 - L1MC/D LINE L1 -2307 5895 5776 28 0 0 0 chr12 15427244 15427272 -128855217 + AT_rich Low_complexity Low_complexity 1 28 0 542 296 66 0 chr12 15427322 15427623 -128854866 - L1MEc LINE L1 -4823 1573 1253 701 209 44 18 chr12 15427656 15427670 -128854819 - L1MC/D LINE L1 -1438 5102 5090 1461 152 11 19 chr12 15427670 15427933 -128854556 - L1PA16 LINE L1 -4 6162 5902 701 209 44 18 chr12 15427933 15428143 -128854346 - L1MC/D LINE L1 -1450 5090 4872 * 5003 132 25 65 chr12 15428139 15428681 -128853808 - L1MA6 LINE L1 -5 6295 5733 1997 141 0 46 chr12 15428681 15428987 -128853502 + AluSx SINE Alu 1 292 -20 5003 132 25 65 chr12 15428987 15429102 -128853387 - L1MA6 LINE L1 -567 5733 5615 2849 13 0 0 chr12 15429102 15429411 -128853078 - AluYa5 SINE Alu -2 309 1 5003 132 25 65 chr12 15429411 15430050 -128852439 - L1MA6 LINE L1 -685 5615 4952 528 59 0 0 chr12 15430050 15430118 -128852371 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 2019 127 36 0 chr12 15430119 15430395 -128852094 - AluSx SINE Alu -26 286 1 5003 132 25 65 chr12 15430395 15430444 -128852045 - L1MA6 LINE L1 -1348 4952 4903 698 164 15 67 chr12 15430444 15430578 -128851911 - FLAM_A SINE Alu -6 127 1 5003 132 25 65 chr12 15430578 15430947 -128851542 - L1MA6 LINE L1 -1397 4903 4644 940 254 48 7 chr12 15430955 15431246 -128851243 - L1M1 LINE L1 -5365 2200 1898 762 306 47 69 chr12 15431809 15432231 -128850258 - L1M1 LINE L1 -5532 1954 1542 2286 127 50 27 chr12 15432240 15432680 -128849809 - LTR7 LTR ERV1 0 450 1 5049 227 45 73 chr12 15432688 15434112 -128848377 - L1MC/D LINE L1 -1662 4878 3537 1797 188 0 7 chr12 15434112 15434421 -128848068 - AluJo SINE Alu -5 307 1 5049 227 45 73 chr12 15434421 15435228 -128847261 - L1MC/D LINE L1 -3003 3537 2709 2179 102 0 3 chr12 15435726 15436047 -128846442 - AluSg SINE Alu 0 320 1 2168 103 10 0 chr12 15436115 15436406 -128846083 - AluSg SINE Alu -16 294 1 24 0 0 0 chr12 15436509 15436533 -128845956 + AT_rich Low_complexity Low_complexity 1 24 0 1659 151 78 9 chr12 15436614 15436958 -128845531 - L1MA7 LINE L1 -28 6263 5896 * 9276 205 54 35 chr12 15436955 15438362 -128844127 - L1MDa LINE L1 -3829 2711 1231 1925 150 10 0 chr12 15438362 15438676 -128843813 - L1MC1 LINE L1 0 6333 6017 9276 205 54 35 chr12 15438676 15439918 -128842571 - L1MDa LINE L1 -5309 1231 14 1907 133 7 0 chr12 15440721 15441000 -128841489 - AluSx SINE Alu -8 304 24 396 0 0 0 chr12 15441344 15441388 -128841101 + (TG)n Simple_repeat Simple_repeat 2 45 0 263 351 54 27 chr12 15441792 15441903 -128840586 - MER5A DNA MER1_type -68 121 8 2911 275 147 31 chr12 15441907 15443214 -128839275 + L2 LINE L2 1460 2917 -397 1583 193 3 69 chr12 15443215 15443604 -128838885 + MLT1A2 LTR MaLR 1 363 -11 634 305 81 38 chr12 15443617 15443774 -128838715 + L2 LINE L2 2917 3066 -247 2266 105 3 0 chr12 15443774 15444070 -128838419 + AluSq SINE Alu 2 298 -15 634 305 81 38 chr12 15444070 15444143 -128838346 + L2 LINE L2 3066 3134 -179 297 75 0 0 chr12 15444143 15444183 -128838306 + (CA)n Simple_repeat Simple_repeat 1 40 0 634 305 81 38 chr12 15444183 15444295 -128838194 + L2 LINE L2 3134 3275 -38 687 68 0 19 chr12 15444343 15444446 -128838043 - L1PA8 LINE L1 0 6172 6072 348 214 0 31 chr12 15444460 15444558 -128837931 - MER31A LTR ERV1 -38 447 353 2129 87 4 51 chr12 15446360 15446840 -128835649 + MER84-int LTR ERV1 4440 4953 -1 3327 106 6 6 chr12 15446840 15447341 -128835148 + MER84 LTR ERVI 1 501 -6 2553 164 56 42 chr12 15447385 15447853 -128834636 + Charlie5 DNA MER1_type 1951 2432 -192 2115 112 7 0 chr12 15447853 15448138 -128834351 - AluSx SINE Alu -13 299 13 2553 164 56 42 chr12 15448138 15448334 -128834155 + Charlie5 DNA MER1_type 2432 2624 0 420 314 130 0 chr12 15448477 15448646 -128833843 + MIR SINE MIR 48 238 -24 861 171 18 30 chr12 15448684 15448848 -128833641 + FRAM SINE Alu 1 162 -14 320 350 36 75 chr12 15449020 15449288 -128833201 - L2 LINE L2 -943 2371 2120 1768 150 0 8 chr12 15449288 15449578 -128832911 + AluSx SINE Alu 18 305 0 320 350 36 75 chr12 15449578 15449697 -128832792 - L2 LINE L2 -1194 2120 1998 3671 85 58 7 chr12 15450574 15451126 -128831363 - LTR19B LTR ERV1 0 580 1 313 256 37 24 chr12 15451543 15451625 -128830864 + MIR3 SINE MIR 109 191 -17 771 294 82 79 chr12 15452044 15452992 -128829497 + HAL1 LINE L1 2 956 -1551 8055 75 4 12 chr12 15452992 15454072 -128828417 - MER11C LTR ERVK 0 1071 1 771 294 82 79 chr12 15454072 15454274 -128828215 + HAL1 LINE L1 956 1156 -1351 24 0 0 0 chr12 15454286 15454310 -128828179 + AT_rich Low_complexity Low_complexity 1 24 0 734 225 132 28 chr12 15454374 15454545 -128827944 + HAL1 LINE L1 1342 1494 -1013 2289 148 75 5 chr12 15454545 15454943 -128827546 + MSTB LTR MaLR 1 426 0 734 225 132 28 chr12 15454943 15455060 -128827429 + HAL1 LINE L1 1494 1660 -847 1003 246 79 27 chr12 15455159 15455602 -128826887 + HAL1 LINE L1 2037 2502 -5 2287 72 48 0 chr12 15455627 15455920 -128826569 + AluY SINE Alu 1 307 -4 228 393 7 7 chr12 15456068 15456218 -128826271 - L2 LINE L2 -1016 2298 2149 409 379 6 12 chr12 15456708 15456877 -128825612 + MIR SINE MIR 13 180 -82 2266 74 17 7 chr12 15457074 15457370 -128825119 - AluSg SINE Alu -11 299 1 288 304 65 28 chr12 15457476 15457690 -128824799 + HAL1 LINE L1 1544 1765 -742 1813 142 6 66 chr12 15457835 15458153 -128824336 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr12 15458153 15458175 -128824314 + AT_rich Low_complexity Low_complexity 1 22 0 247 267 0 0 chr12 15458240 15458315 -128824174 + T-rich Low_complexity Low_complexity 1 75 0 572 279 0 0 chr12 15458336 15458465 -128824024 - FLAM_A SINE Alu -4 129 1 2144 123 0 13 chr12 15458467 15458776 -128823713 - AluSx SINE Alu -7 305 1 225 306 41 20 chr12 15458777 15458875 -128823614 + L2 LINE L2 2698 2797 -517 354 198 12 12 chr12 15459726 15459812 -128822677 + MLT1J2 LTR MaLR 344 429 -21 2190 76 7 16 chr12 15459947 15460251 -128822238 + AluY SINE Alu 1 301 -10 2354 103 0 0 chr12 15460260 15460571 -128821918 + AluSx SINE Alu 1 311 -1 2310 116 0 3 chr12 15461359 15461669 -128820820 - AluSx SINE Alu -3 309 1 185 111 28 0 chr12 15461742 15461778 -128820711 - L2 LINE L2 -2 3311 3275 439 270 132 21 chr12 15461905 15462194 -128820295 + L1ME4a LINE L1 5563 5883 -238 2104 112 20 3 chr12 15462695 15463000 -128819489 + AluSg SINE Alu 1 310 0 359 133 0 0 chr12 15463316 15463376 -128819113 - L1MA4 LINE L1 -8 6292 6233 528 160 0 0 chr12 15463476 15463570 -128818919 - L1MA4 LINE L1 -70 6230 6137 313 312 69 53 chr12 15464127 15464316 -128818173 + HAL1b LINE L1 586 777 -571 473 322 25 29 chr12 15464716 15464961 -128817528 - MLT1J LTR MaLR -29 482 239 1937 152 3 7 chr12 15465171 15465474 -128817015 + AluJb SINE Alu 6 307 -5 524 105 0 53 chr12 15465942 15466008 -128816481 - MSTC LTR MaLR 0 428 367 2281 114 0 16 chr12 15466008 15466323 -128816166 - AluSq SINE Alu -3 310 1 524 105 0 53 chr12 15466323 15466351 -128816138 - MSTC LTR MaLR -61 367 339 312 120 0 0 chr12 15466353 15466403 -128816086 - MSTC LTR MaLR -378 50 1 2143 125 0 0 chr12 15466621 15466917 -128815572 + AluSg1 SINE Alu 1 296 -13 2062 144 30 25 chr12 15467038 15467400 -128815089 + THE1B LTR MaLR 1 364 0 10485 104 22 29 chr12 15467401 15468991 -128813498 + THE1B-int LTR MaLR 2 1580 0 2279 122 37 8 chr12 15468991 15469345 -128813144 + THE1B LTR MaLR 1 364 0 387 312 95 5 chr12 15469879 15470068 -128812421 - MIR SINE MIR -48 214 9 250 268 37 12 chr12 15470229 15470311 -128812178 + L2 LINE L2 3191 3274 -39 366 291 147 50 chr12 15470953 15471239 -128811250 + L1M4 LINE L1 2734 2991 -3155 1860 126 43 7 chr12 15471239 15471516 -128810973 - AluJb SINE Alu -25 287 1 366 291 147 50 chr12 15471516 15471747 -128810742 + L1M4 LINE L1 2991 3301 -2845 2084 102 27 0 chr12 15471750 15472044 -128810445 + AluSq SINE Alu 1 302 -11 869 142 0 8 chr12 15472387 15472521 -128809968 - FLAM_C SINE Alu 0 133 1 3965 125 15 21 chr12 15472686 15473156 -128809333 + L1PA16 LINE L1 5513 5979 -187 4780 45 9 0 chr12 15473156 15473739 -128808750 + LTR10C LTR ERV1 4 591 0 3965 125 15 21 chr12 15473739 15473926 -128808563 + L1PA16 LINE L1 5979 6166 0 313 278 61 0 chr12 15474065 15474180 -128808309 + L1MEd LINE L1 604 725 -5394 865 218 161 59 chr12 15474267 15474592 -128807897 - L1ME LINE L1 -383 5787 5404 1757 132 52 14 chr12 15474592 15474879 -128807610 - AluSx SINE Alu -14 298 1 865 218 161 59 chr12 15474879 15474993 -128807496 - L1ME LINE L1 -766 5404 5303 650 161 23 8 chr12 15475486 15475616 -128806873 - AluJo SINE Alu -176 136 5 1948 106 36 30 chr12 15476536 15476838 -128805651 + AluSx SINE Alu 1 304 -8 200 143 48 0 chr12 15479019 15479061 -128803428 + C-rich Low_complexity Low_complexity 5 48 0 2621 27 0 3 chr12 15479804 15480104 -128802385 + AluY SINE Alu 1 299 -12 321 269 64 0 chr12 15480421 15480499 -128801990 - MIR SINE MIR -148 114 32 184 368 0 0 chr12 15480530 15480587 -128801902 - L2 LINE L2 -15 3298 3242 332 302 21 10 chr12 15483572 15483668 -128798821 - L2 LINE L2 -19 3253 3157 183 42 0 0 chr12 15484675 15484699 -128797790 + (CA)n Simple_repeat Simple_repeat 2 25 0 585 273 120 10 chr12 15484954 15485163 -128797326 + MIR SINE MIR 31 262 0 215 324 99 55 chr12 15485735 15485988 -128796501 - L2 LINE L2 -1020 2294 2031 22 35 0 0 chr12 15486304 15486333 -128796156 + AT_rich Low_complexity Low_complexity 1 29 0 2114 125 3 19 chr12 15486672 15486985 -128795504 - AluJb SINE Alu 0 312 5 2199 164 173 4 chr12 15487913 15488438 -128794051 - MER90 LTR ERV1 0 614 1 469 286 75 6 chr12 15488807 15488968 -128793521 - LTR33 LTR ERVL -326 195 24 287 141 0 26 chr12 15489700 15489822 -128792667 + LTR41 LTR ERVL 1 172 -601 462 148 62 0 chr12 15489883 15489964 -128792525 + MER58B DNA MER1_type 256 341 0 359 267 139 10 chr12 15491256 15491357 -128791132 + L2 LINE L2 3158 3271 -1 1381 158 57 0 chr12 15492391 15492619 -128789870 + AluJo SINE Alu 42 282 -30 2289 91 3 10 chr12 15495304 15495600 -128786889 + AluSq SINE Alu 1 294 -19 293 212 15 0 chr12 15495761 15495827 -128786662 - HsTC2 DNA Tc2 -4 1894 1828 2277 102 0 3 chr12 15496652 15496945 -128785544 + AluY SINE Alu 1 292 -19 456 333 81 10 chr12 15498273 15498471 -128784018 + MIR SINE MIR 3 214 -48 2904 119 15 7 chr12 15499036 15499491 -128782998 + L1PB2 LINE L1 5691 6149 -2 422 222 93 9 chr12 15499726 15499834 -128782655 + L2 LINE L2 3193 3309 -4 2352 103 10 0 chr12 15499901 15500211 -128782278 + AluSq SINE Alu 1 313 0 2199 132 0 0 chr12 15502799 15503109 -128779380 + AluSg SINE Alu 1 310 0 226 216 252 36 chr12 15503130 15503269 -128779220 + MIR SINE MIR 1 169 -93 679 233 47 57 chr12 15503358 15503658 -128778831 - L1ME2 LINE L1 -144 6020 5724 275 271 0 0 chr12 15503660 15503745 -128778744 - L1ME2 LINE L1 -501 5663 5579 1349 133 167 31 chr12 15503796 15504113 -128778376 + MER46B DNA MER2_type 2 236 0 241 380 73 0 chr12 15504687 15504824 -128777665 + MIR SINE MIR 84 230 -32 320 309 37 53 chr12 15504962 15505150 -128777339 + MLT1K LTR MaLR 163 347 -241 596 250 91 43 chr12 15505577 15505785 -128776704 + MIR SINE MIR 42 259 -3 24 32 0 0 chr12 15507455 15507486 -128775003 + AT_rich Low_complexity Low_complexity 1 31 0 200 170 38 0 chr12 15507666 15507719 -128774770 + (TA)n Simple_repeat Simple_repeat 1 55 0 462 246 90 0 chr12 15508204 15508326 -128774163 - MER20 DNA MER1_type -38 181 49 208 296 91 0 chr12 15509840 15509928 -128772561 + MIR SINE MIR 111 206 -56 2080 110 3 10 chr12 15514190 15514481 -128768008 - AluSx SINE Alu -23 289 1 2227 109 3 0 chr12 15515233 15515527 -128766962 + AluSx SINE Alu 1 295 -17 248 319 36 87 chr12 15517750 15517888 -128764601 - L2 LINE L2 0 3272 3142 313 282 45 0 chr12 15518475 15518585 -128763904 + Tigger8 DNA MER2_type 132 246 -420 232 353 32 5 chr12 15518895 15519082 -128763407 + Tigger8 DNA MER2_type 388 579 -87 2483 51 0 0 chr12 15519512 15519807 -128762682 + AluY SINE Alu 1 295 -16 231 232 23 90 chr12 15519872 15520049 -128762440 - L1ME LINE L1 -403 6112 5948 635 176 17 0 chr12 15520103 15520222 -128762267 - L1PA16 LINE L1 -6 6160 6040 730 196 35 30 chr12 15520301 15520531 -128761958 + L1MC5 LINE L1 7701 7931 -30 425 320 143 26 chr12 15522201 15522432 -128760057 + MIR SINE MIR 2 259 -3 224 355 79 32 chr12 15522735 15522924 -128759565 - L2 LINE L2 -352 2962 2765 248 345 78 39 chr12 15523847 15524079 -128758410 + L2 LINE L2 1744 1984 -1330 2067 104 11 4 chr12 15524089 15524369 -128758120 - AluSx SINE Alu -7 305 24 4501 223 119 61 chr12 15524423 15524701 -128757788 - L1ME LINE L1 -1003 5537 5276 6417 70 42 6 chr12 15524701 15525787 -128756702 - L1PA8A LINE L1 -3 6128 5035 4501 223 119 61 chr12 15525787 15525848 -128756641 - L1ME LINE L1 -1264 5276 5220 2024 126 3 17 chr12 15525848 15526150 -128756339 + AluSc SINE Alu 1 298 -11 4501 223 119 61 chr12 15526150 15528025 -128754464 - L1ME LINE L1 -1320 5220 3194 1190 220 25 22 chr12 15528052 15528411 -128754078 - L1M4 LINE L1 -1523 4623 4264 370 149 36 113 chr12 15528417 15528585 -128753904 - L1ME LINE L1 -3993 2547 2393 664 244 93 9 chr12 15528596 15528821 -128753668 - MLT1C LTR MaLR 0 467 224 419 266 37 37 chr12 15528843 15529057 -128753432 - L1ME LINE L1 -4179 2361 2148 219 156 0 22 chr12 15529342 15529387 -128753102 + G-rich Low_complexity Low_complexity 3 46 0 267 31 0 0 chr12 15529663 15529695 -128752794 + (CAA)n Simple_repeat Simple_repeat 2 33 0 344 376 5 5 chr12 15529715 15529904 -128752585 - L1ME LINE L1 -6330 210 22 22 35 0 0 chr12 15530081 15530110 -128752379 + AT_rich Low_complexity Low_complexity 1 29 0 282 56 0 0 chr12 15532158 15532194 -128750295 + (CA)n Simple_repeat Simple_repeat 1 36 0 567 238 105 41 chr12 15533748 15533920 -128748569 - MER5A DNA MER1_type 0 189 7 191 248 171 26 chr12 15534440 15534557 -128747932 + L2 LINE L2 3167 3300 -13 2276 99 0 7 chr12 15534747 15535050 -128747439 - AluSg SINE Alu -8 302 2 809 308 47 37 chr12 15536035 15536525 -128745964 - MLT1K LTR MaLR -36 552 58 33 25 0 0 chr12 15536663 15536703 -128745786 + AT_rich Low_complexity Low_complexity 1 40 0 316 290 21 11 chr12 15536961 15537054 -128745435 - MIR3 SINE MIR -49 159 66 300 253 0 0 chr12 15537065 15537140 -128745349 + (CAT)n Simple_repeat Simple_repeat 1 75 0 704 325 29 0 chr12 15537141 15537384 -128745105 - MIR SINE MIR -1 261 12 324 0 0 0 chr12 15537469 15537505 -128744984 + (TG)n Simple_repeat Simple_repeat 2 37 0 378 0 0 0 chr12 15537886 15537928 -128744561 + (TG)n Simple_repeat Simple_repeat 2 43 0 480 35 0 0 chr12 15537991 15538049 -128744440 + (TA)n Simple_repeat Simple_repeat 1 58 0 241 170 0 19 chr12 15538055 15538108 -128744381 - AluSc SINE Alu -2 297 246 277 231 90 13 chr12 15538366 15538444 -128744045 - MIR SINE MIR -148 114 31 2945 260 119 12 chr12 15538465 15538621 -128743868 + L2 LINE L2 1918 2056 -1257 1823 154 34 14 chr12 15538621 15538914 -128743575 - AluJb SINE Alu -13 299 1 2945 260 119 12 chr12 15538914 15540032 -128742457 + L2 LINE L2 2056 3313 0 375 309 9 29 chr12 15540437 15540647 -128741842 - MER112 DNA MER1_type -6 254 49 391 343 35 20 chr12 15540758 15540929 -128741560 + MIR SINE MIR 40 212 -50 417 245 177 7 chr12 15541409 15541556 -128740933 - MIR SINE MIR -82 180 9 22 0 0 0 chr12 15541711 15541733 -128740756 + AT_rich Low_complexity Low_complexity 1 22 0 301 262 12 12 chr12 15541754 15541838 -128740651 - MIR SINE MIR -18 244 161 204 67 0 0 chr12 15542888 15542918 -128739571 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2218 92 10 0 chr12 15542960 15543252 -128739237 - AluSg SINE Alu -15 295 1 437 188 0 118 chr12 15543313 15543457 -128739032 - Tigger7 DNA MER2_type 0 2487 2361 * 2558 147 123 4 chr12 15543452 15543941 -128738548 - Tigger7 DNA MER2_type -1940 547 1 1187 165 74 0 chr12 15544238 15544468 -128738021 - Tigger7 DNA MER2_type -309 424 178 225 157 39 20 chr12 15544748 15544799 -128737690 - L2 LINE L2 0 3272 3221 368 313 123 33 chr12 15544804 15544858 -128737631 - MIR SINE MIR 0 262 214 2062 150 0 3 chr12 15544858 15545164 -128737325 - AluSx SINE Alu -7 305 1 368 313 123 33 chr12 15545164 15545320 -128737169 - MIR SINE MIR -48 214 33 181 317 37 99 chr12 15546065 15546226 -128736263 - L2 LINE L2 -674 2640 2490 1562 220 30 28 chr12 15546714 15547109 -128735380 - MSTD LTR MaLR 0 396 1 180 111 0 0 chr12 15549813 15549840 -128732649 + (CAAGC)n Simple_repeat Simple_repeat 2 28 0 267 274 139 36 chr12 15551544 15551847 -128730642 - L1ME4a LINE L1 -4 6117 5784 808 262 86 13 chr12 15551906 15552139 -128730350 + MIR SINE MIR 13 262 0 209 345 44 53 chr12 15552384 15552497 -128729992 + MIR SINE MIR 21 132 -76 188 289 99 33 chr12 15552550 15552671 -128729818 - MIR SINE MIR -37 225 97 651 188 0 18 chr12 15552907 15553077 -128729412 + GA-rich Low_complexity Low_complexity 2 168 0 335 320 47 13 chr12 15553356 15553506 -128728983 + MIR SINE MIR 37 191 -71 1827 216 121 2 chr12 15553983 15554530 -128727959 - L1MC4 LINE L1 0 8042 7431 192 77 0 0 chr12 15554819 15554845 -128727644 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 230 278 120 37 chr12 15555105 15555213 -128727276 - L2 LINE L2 -1 3312 3196 1194 278 116 65 chr12 15557008 15557735 -128724754 - L3 LINE CR1 -310 1267 504 232 182 0 0 chr12 15557882 15557926 -128724563 + Charlie8 DNA MER1_type 1377 1420 -997 1636 269 5 5 chr12 15557943 15558375 -128724114 + L1MCc LINE L1 25 456 -5967 2006 234 76 48 chr12 15558426 15559084 -128723405 + L1MCc LINE L1 669 1354 -5069 1876 183 3 3 chr12 15559084 15559384 -128723105 + AluJo SINE Alu 1 300 -12 2006 234 76 48 chr12 15559384 15559501 -128722988 + L1MCc LINE L1 1354 1466 -4957 196 182 0 0 chr12 15559508 15559541 -128722948 - L3 LINE CR1 -1114 463 431 300 178 0 0 chr12 15559757 15559830 -128722659 + C-rich Low_complexity Low_complexity 2 74 0 1812 172 14 3 chr12 15559830 15560120 -128722369 - AluJo SINE Alu -19 293 1 236 273 34 23 chr12 15560212 15560300 -128722189 - MIR SINE MIR -6 256 168 565 319 56 14 chr12 15560773 15561018 -128721471 + MIR SINE MIR 14 262 0 870 206 75 9 chr12 15561377 15561605 -128720884 - AluJo SINE Alu -4 308 66 315 215 13 142 chr12 15562964 15563063 -128719426 - MIR SINE MIR -62 146 117 1996 132 24 0 chr12 15563063 15563359 -128719130 - AluJb SINE Alu -9 303 1 315 215 13 142 chr12 15563359 15563427 -128719062 - MIR SINE MIR -91 117 42 17378 151 27 17 chr12 15563462 15564087 -128718402 - L1PA11 LINE L1 0 6454 5837 1864 129 86 0 chr12 15564087 15564365 -128718124 - AluSx SINE Alu -10 302 1 17378 151 27 17 chr12 15564365 15567507 -128714982 - L1PA11 LINE L1 -617 5837 2201 2066 145 0 37 chr12 15567507 15567831 -128714658 - AluSx SINE Alu 0 312 1 17378 151 27 17 chr12 15567831 15568387 -128714102 - L1PA11 LINE L1 -4253 2201 1652 36269 85 10 10 chr12 15568390 15568735 -128713754 - L1PA6 LINE L1 0 6154 5811 2384 93 0 0 chr12 15568735 15569036 -128713453 - AluY SINE Alu -10 301 1 36269 85 10 10 chr12 15569036 15574828 -128707661 - L1PA6 LINE L1 -343 5811 11 5470 231 41 20 chr12 15574838 15577549 -128704940 - L1PA12 LINE L1 -4288 3296 1 505 330 124 35 chr12 15578125 15578586 -128703903 - L3 LINE CR1 -5 1572 1071 22 35 0 0 chr12 15579541 15579570 -128702919 + AT_rich Low_complexity Low_complexity 1 29 0 921 213 76 105 chr12 15580732 15581140 -128701349 + MER57A LTR ERV1 3 398 -5 685 341 148 14 chr12 15581724 15582231 -128700258 + L3 LINE CR1 618 1192 -385 188 211 0 0 chr12 15582419 15582457 -128700032 + L2 LINE L2 3269 3306 -7 450 0 0 0 chr12 15582687 15582737 -128699752 + (TA)n Simple_repeat Simple_repeat 2 51 0 355 336 0 35 chr12 15583839 15583982 -128698507 - LTR16A LTR ERVL -220 230 93 228 35 0 0 chr12 15585440 15585469 -128697020 + (CTA)n Simple_repeat Simple_repeat 1 29 0 1021 257 20 4 chr12 15585806 15586055 -128696434 - MIR SINE MIR -3 259 7 313 274 17 68 chr12 15586455 15586572 -128695917 + MIR3 SINE MIR 87 197 -11 505 299 81 15 chr12 15586668 15586865 -128695624 - LTR16A LTR ERVL 0 450 241 2506 256 152 53 chr12 15586937 15588538 -128693951 + L1MEc LINE L1 73 1831 -4565 358 209 79 3 chr12 15588542 15588651 -128693838 - AluJ/FRAM SINE Alu 0 302 223 326 258 50 58 chr12 15588652 15588772 -128693717 + L1MEc LINE L1 1819 1937 -4459 325 179 52 67 chr12 15588782 15588916 -128693573 - L1MEc LINE L1 -4111 2285 2154 1588 126 170 0 chr12 15589766 15590013 -128692476 + AluSx SINE Alu 1 289 -23 2269 118 0 9 chr12 15590866 15591181 -128691308 + AluSx SINE Alu 1 312 0 203 243 0 0 chr12 15592978 15593015 -128689474 + polypurine Low_complexity Low_complexity 6 42 0 203 254 0 56 chr12 15594009 15594080 -128688409 - L2 LINE L2 -20 3252 3186 200 303 0 15 chr12 15595678 15595744 -128686745 + A-rich Low_complexity Low_complexity 3 67 0 276 102 0 0 chr12 15596334 15596383 -128686106 + (TCCA)n Simple_repeat Simple_repeat 3 51 0 356 245 102 0 chr12 15596388 15596486 -128686003 - L2 LINE L2 0 3313 3206 628 357 34 4 chr12 15597609 15597844 -128684645 - MIR SINE MIR -12 250 9 202 293 20 91 chr12 15599496 15599536 -128682953 + MIR SINE MIR 34 75 -133 2185 124 0 16 chr12 15599536 15599851 -128682638 - AluSx SINE Alu -2 310 1 202 293 20 91 chr12 15599851 15599909 -128682580 + MIR SINE MIR 75 125 -83 190 333 16 16 chr12 15600251 15600314 -128682175 + MIR SINE MIR 57 119 -89 510 250 13 26 chr12 15601589 15601745 -128680744 + MIR SINE MIR 109 262 0 256 329 89 0 chr12 15601767 15601913 -128680576 + MIR SINE MIR 98 256 -6 2132 108 18 0 chr12 15602194 15602509 -128679980 - AluSx SINE Alu 0 320 1 305 313 40 40 chr12 15602821 15602920 -128679569 + L2 LINE L2 3149 3247 -25 32 43 0 0 chr12 15604805 15604851 -128677638 + AT_rich Low_complexity Low_complexity 1 46 0 316 313 53 40 chr12 15604963 15605113 -128677376 + L2 LINE L2 3158 3309 -4 329 303 9 9 chr12 15605473 15605582 -128676907 - L1MEc LINE L1 -2457 3758 3650 28 0 0 0 chr12 15605590 15605618 -128676871 + AT_rich Low_complexity Low_complexity 1 28 0 871 331 68 35 chr12 15605619 15606256 -128676233 - L1MEc LINE L1 -3241 2974 2317 844 225 0 28 chr12 15606492 15606674 -128675815 - FRAM SINE Alu -7 169 1 391 343 34 59 chr12 15606888 15607127 -128675362 - L1MEc LINE L1 -861 1715 1509 418 351 124 53 chr12 15607347 15608214 -128674275 - L2 LINE L2 -77 3195 2225 213 94 0 0 chr12 15608501 15608533 -128673956 + L2 LINE L2 3271 3302 -11 230 314 19 0 chr12 15610146 15610251 -128672238 + T-rich Low_complexity Low_complexity 1 107 0 306 0 0 0 chr12 15610417 15610451 -128672038 + (CA)n Simple_repeat Simple_repeat 2 35 0 594 279 119 9 chr12 15611081 15611300 -128671189 - MIR SINE MIR -17 245 3 3833 119 94 20 chr12 15611541 15612255 -128670234 + LTR1 LTR ERV1 18 784 -1 2332 104 0 0 chr12 15613222 15613520 -128668969 - AluSg SINE Alu -12 298 1 1126 141 23 23 chr12 15613779 15613956 -128668533 + FRAM SINE Alu 1 176 0 180 320 53 27 chr12 15614001 15614076 -128668413 - MIR SINE MIR -96 112 36 1331 188 5 0 chr12 15616404 15616622 -128665867 - AluJb SINE Alu -93 219 1 189 184 0 0 chr12 15616652 15616690 -128665799 + L2 LINE L2 3276 3313 0 761 285 71 45 chr12 15616914 15617338 -128665151 + LTR16A LTR ERVL 16 450 0 22 35 0 0 chr12 15617343 15617372 -128665117 + AT_rich Low_complexity Low_complexity 1 29 0 2498 184 19 35 chr12 15618502 15619041 -128663448 + MER74A LTR ERVL 26 555 -3 1921 101 0 104 chr12 15619625 15619952 -128662537 - AluSg SINE Alu -13 297 5 24 0 0 0 chr12 15620154 15620178 -128662311 + AT_rich Low_complexity Low_complexity 1 24 0 399 157 0 0 chr12 15621908 15621978 -128660511 + (TG)n Simple_repeat Simple_repeat 1 70 0 21 36 0 0 chr12 15622425 15622453 -128660036 + AT_rich Low_complexity Low_complexity 1 28 0 1639 134 24 3 chr12 15622462 15622754 -128659735 - L1MA5 LINE L1 -1 6299 6002 2253 125 14 3 chr12 15623180 15623532 -128658957 + L1PA14 LINE L1 5805 6160 -1 590 255 194 5 chr12 15623642 15623858 -128658631 + MIR SINE MIR 3 259 -3 350 363 19 32 chr12 15623863 15624020 -128658469 - L3 LINE CR1 -42 1535 1381 2254 217 28 17 chr12 15624773 15625303 -128657186 + MLT1F LTR MaLR 7 542 0 654 241 203 5 chr12 15625408 15625615 -128656874 - MIR SINE MIR -13 249 2 279 300 0 0 chr12 15627073 15627143 -128655346 + MIR SINE MIR 74 143 -119 215 319 50 71 chr12 15627185 15627326 -128655163 + MIR SINE MIR 54 191 -71 330 345 17 0 chr12 15627660 15627779 -128654710 + MER5C DNA MER1_type 4 124 -200 970 181 0 6 chr12 15627861 15628021 -128654468 - AluJo SINE Alu -153 159 1 364 353 111 27 chr12 15628441 15628936 -128653553 - L2 LINE L2 -1 3271 2739 1563 233 92 68 chr12 15628970 15630115 -128652374 - L1ME3A LINE L1 -15 6224 5049 2177 94 23 17 chr12 15630143 15630442 -128652047 + AluSx SINE Alu 1 301 -11 856 236 81 32 chr12 15630509 15630755 -128651734 + MLT2B1 LTR ERVL 229 486 -34 496 52 13 13 chr12 15630822 15630899 -128651590 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 4629 132 17 36 chr12 15631090 15631953 -128650536 - L1MA6 LINE L1 -26 6274 5428 3760 92 6 0 chr12 15632035 15632577 -128649912 + MER41A LTR ERV1 1 545 -9 469 226 60 5 chr12 15632770 15632969 -128649520 - L1ME3A LINE L1 -3132 3083 2874 800 279 117 30 chr12 15632991 15633137 -128649352 - L1MEc LINE L1 -3444 2771 2639 2151 109 0 7 chr12 15633137 15633431 -128649058 + AluSc SINE Alu 1 292 -17 800 279 117 30 chr12 15633431 15634574 -128647915 - L1MEc LINE L1 -3576 2639 1429 315 164 0 0 chr12 15634637 15634698 -128647791 + (TG)n Simple_repeat Simple_repeat 2 62 0 372 103 0 0 chr12 15635094 15635152 -128647337 + (CA)n Simple_repeat Simple_repeat 1 58 0 193 279 0 0 chr12 15635843 15635886 -128646603 - L2 LINE L2 0 3272 3230 25 31 0 0 chr12 15637283 15637315 -128645174 + AT_rich Low_complexity Low_complexity 1 32 0 1301 101 5 0 chr12 15637322 15637560 -128644929 + L1PA8 LINE L1 5950 6188 0 414 246 94 49 chr12 15638392 15638595 -128643894 + MIR SINE MIR 2 213 -49 275 372 67 74 chr12 15639442 15640180 -128642309 - L2 LINE L2 -14 3258 2511 196 331 205 8 chr12 15640228 15640355 -128642134 - L2 LINE L2 -925 2389 2238 296 64 21 0 chr12 15640423 15640470 -128642019 + (TTCA)n Simple_repeat Simple_repeat 2 49 0 408 220 99 0 chr12 15640472 15640563 -128641926 - L2 LINE L2 -12 3301 3202 475 360 92 10 chr12 15640648 15640951 -128641538 - L2 LINE L2 -1258 2056 1729 291 358 58 47 chr12 15641159 15641522 -128640967 + L2 LINE L2 2540 2906 -408 566 318 23 17 chr12 15641851 15642024 -128640465 - MIR3 SINE MIR -15 193 20 1077 224 32 44 chr12 15642842 15643079 -128639410 + MER87 LTR ERV1 168 401 -140 1657 181 31 10 chr12 15643079 15643371 -128639118 - AluSx SINE Alu -14 298 1 1077 224 32 44 chr12 15643371 15643472 -128639017 + MER87 LTR ERV1 401 502 -39 1944 138 58 19 chr12 15643897 15644258 -128638231 + THE1C LTR MaLR 1 375 0 222 304 138 36 chr12 15646095 15646342 -128636147 - L2 LINE L2 -38 3275 3004 2594 62 0 0 chr12 15646402 15646710 -128635779 + AluY SINE Alu 1 308 -3 347 329 12 42 chr12 15646761 15646928 -128635561 - L2 LINE L2 -444 2870 2709 5129 196 18 10 chr12 15647035 15648474 -128634015 + L1PA16 LINE L1 4125 5577 -589 2961 161 69 12 chr12 15648586 15649150 -128633339 + L1PA16 LINE L1 5567 6162 -4 2317 98 3 0 chr12 15650222 15650517 -128631972 - AluSp SINE Alu -17 296 1 21 57 0 0 chr12 15650527 15650562 -128631927 + AT_rich Low_complexity Low_complexity 1 35 0 314 343 22 15 chr12 15650564 15650698 -128631791 - MER5A DNA MER1_type -37 152 18 210 238 303 41 chr12 15650808 15650930 -128631559 + MIR3 SINE MIR 44 197 -11 201 283 19 0 chr12 15654272 15654325 -128628164 + L2 LINE L2 3255 3308 -5 746 196 111 54 chr12 15655392 15655450 -128627039 + MER69 DNA AcHobo 1927 1980 -546 333 0 0 0 chr12 15655450 15655487 -128627002 + (CA)n Simple_repeat Simple_repeat 1 37 0 746 196 111 54 chr12 15655487 15655937 -128626552 + MER69 DNA AcHobo 1980 2524 -2 195 163 61 82 chr12 15657464 15657513 -128624976 - L2 LINE L2 -16 3256 3209 288 241 181 17 chr12 15659139 15659255 -128623234 - MIR3 SINE MIR -6 202 68 183 129 0 0 chr12 15659627 15659658 -128622831 + (A)n Simple_repeat Simple_repeat 1 31 0 229 321 0 45 chr12 15660317 15660451 -128622038 + MIR SINE MIR 19 146 -62 620 124 9 0 chr12 15661168 15661273 -128621216 + (TC)n Simple_repeat Simple_repeat 2 107 0 417 59 0 0 chr12 15661273 15661324 -128621165 + (TTCC)n Simple_repeat Simple_repeat 1 51 0 1681 175 3 3 chr12 15661324 15661609 -128620880 - AluSx SINE Alu -8 304 20 235 295 33 41 chr12 15661884 15662006 -128620483 + MIR3 SINE MIR 48 168 -40 539 225 33 13 chr12 15662153 15662304 -128620185 + L1MA9 LINE L1 6121 6274 -38 25 0 0 0 chr12 15662323 15662348 -128620141 + AT_rich Low_complexity Low_complexity 1 25 0 209 33 33 0 chr12 15662375 15662405 -128620084 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 364 257 88 68 chr12 15662471 15662619 -128619870 - MIR SINE MIR 0 262 112 734 147 94 12 chr12 15662805 15662975 -128619514 - L1MA9 LINE L1 -38 6274 6091 453 279 158 21 chr12 15663273 15663463 -128619026 - MIR SINE MIR -45 217 2 388 254 61 48 chr12 15663563 15663728 -128618761 + MIR3 SINE MIR 12 178 -30 364 295 152 29 chr12 15664456 15664666 -128617823 + MIR SINE MIR 21 256 -6 396 106 64 0 chr12 15665172 15665266 -128617223 + GA-rich Low_complexity Low_complexity 1 100 0 582 160 10 10 chr12 15666378 15666478 -128616011 + AluJb SINE Alu 190 289 -23 1353 137 5 0 chr12 15666486 15666691 -128615798 + AluJb SINE Alu 1 206 -106 252 245 0 0 chr12 15666839 15666892 -128615597 + MIR SINE MIR 204 256 -6 2228 109 3 0 chr12 15667858 15668152 -128614337 - AluSq SINE Alu -18 295 1 364 279 44 44 chr12 15670273 15670431 -128612058 - L2 LINE L2 0 3313 3156 271 283 74 111 chr12 15670733 15671030 -128611459 - L2 LINE L2 -50 3222 2937 339 356 86 26 chr12 15671362 15671713 -128610776 - L2 LINE L2 -748 2566 2195 * 615 222 99 41 chr12 15671712 15671883 -128610606 + MER5A DNA MER1_type 9 189 0 308 366 93 12 chr12 15671953 15672199 -128610290 + L2 LINE L2 2509 2774 -540 1657 209 171 9 chr12 15672238 15672693 -128609796 + MLT1F LTR MaLR 1 529 -13 1148 302 106 17 chr12 15672708 15673172 -128609317 + L2 LINE L2 2807 3311 -2 3888 234 46 53 chr12 15673451 15673570 -128608919 - L1MD2 LINE L1 -86 6273 6155 327 25 0 0 chr12 15673570 15673610 -128608879 + (TG)n Simple_repeat Simple_repeat 2 41 0 3888 234 46 53 chr12 15673610 15673816 -128608673 - L1MD2 LINE L1 -204 6155 5949 2695 81 21 55 chr12 15673816 15674236 -128608253 + L1PA13 LINE L1 5755 6160 -3 3888 234 46 53 chr12 15674236 15675430 -128607059 - L1MD2 LINE L1 -410 5949 4781 1654 178 28 10 chr12 15675460 15675847 -128606642 - L1MD2 LINE L1 -2161 3985 3592 852 279 29 21 chr12 15676274 15676614 -128605875 - L1ME1 LINE L1 0 6166 5824 5979 191 61 29 chr12 15677199 15678203 -128604286 - ERVL-B3 LTR ERVL -4388 1376 318 886 173 0 19 chr12 15678203 15678359 -128604130 - L1PB4 LINE L1 -12 6144 5992 5979 191 61 29 chr12 15678359 15678687 -128603802 - ERVL-B3 LTR ERVL -5446 318 2 1760 207 42 68 chr12 15678688 15679257 -128603232 - MLT2B3 LTR ERVL 0 554 1 344 310 14 41 chr12 15679487 15679632 -128602857 - L2 LINE L2 0 3313 3173 255 340 41 0 chr12 15679630 15679727 -128602762 - L2 LINE L2 -621 2693 2593 * 216 290 178 28 chr12 15679957 15680064 -128602425 - MIR SINE MIR -15 247 125 862 156 95 0 chr12 15680102 15680281 -128602208 - L1 LINE L1 -1004 5142 4947 814 124 22 58 chr12 15680282 15680419 -128602070 - FLAM_C SINE Alu -11 132 1 2897 172 5 7 chr12 15680420 15680977 -128601512 - L1 LINE L1 -1191 4955 4400 * 35426 92 15 7 chr12 15680971 15687079 -128595410 - L1PA14 LINE L1 -2 6159 11 2589 188 37 25 chr12 15687089 15687878 -128594611 - L1PA13 LINE L1 -4288 3296 2488 3554 178 1 3 chr12 15687982 15688685 -128593804 - L1P LINE L1 -1330 4816 4115 3463 148 24 14 chr12 15688683 15689258 -128593231 - L1PA13 LINE L1 -6989 592 12 * 1215 188 61 0 chr12 15689261 15689538 -128592951 - L1 LINE L1 -1735 4411 4118 5485 131 25 4 chr12 15689538 15691002 -128591487 - L1PA16 LINE L1 -16 6150 4672 230 294 0 20 chr12 15691091 15691193 -128591296 + L1MC4a LINE L1 5313 5412 -2396 336 300 100 11 chr12 15691313 15691593 -128590896 + L1MC4a LINE L1 5626 5930 -1878 293 352 28 28 chr12 15692102 15692247 -128590242 - MIR3 SINE MIR -26 182 38 206 367 0 37 chr12 15693309 15693418 -128589071 - MER5A DNA MER1_type -5 184 80 825 300 71 57 chr12 15693767 15693848 -128588641 + LTR33 LTR ERVL 1 79 -442 1343 118 20 0 chr12 15693848 15694052 -128588437 - L1PA10 LINE L1 -15 6153 5946 825 300 71 57 chr12 15694052 15694476 -128588013 + LTR33 LTR ERVL 79 513 -8 2227 110 0 31 chr12 15694680 15694999 -128587490 - AluSc SINE Alu 0 309 1 403 313 94 38 chr12 15695054 15695214 -128587275 - L3 LINE CR1 -302 1275 1107 338 339 24 31 chr12 15695652 15695779 -128586710 - MIR3 SINE MIR -79 129 4 2424 66 0 3 chr12 15696299 15696600 -128585889 + AluY SINE Alu 1 300 -11 235 326 102 0 chr12 15697777 15697875 -128584614 - MIR SINE MIR -108 154 47 2851 155 67 49 chr12 15698165 15698836 -128583653 + L1MC2 LINE L1 5654 6336 -8 837 276 41 22 chr12 15698985 15699300 -128583189 - L1MDa LINE L1 -6179 361 41 311 202 154 6 chr12 15699597 15699693 -128582796 - MIR3 SINE MIR -54 154 31 460 267 161 19 chr12 15699693 15699854 -128582635 - MER5A DNA MER1_type 0 189 6 222 394 0 0 chr12 15700381 15700452 -128582037 + MIR SINE MIR 45 115 -93 192 273 61 15 chr12 15703232 15703298 -128579191 - MIR SINE MIR -64 144 76 416 158 53 26 chr12 15703447 15703561 -128578928 - MER53 DNA DNA 0 189 73 2125 246 48 40 chr12 15703851 15704810 -128577679 - L1M4 LINE L1 -1443 4703 3737 6049 199 15 6 chr12 15705214 15707357 -128575132 - L1PA15 LINE L1 -3 6162 4031 306 335 176 6 chr12 15708611 15708793 -128573696 - L2 LINE L2 -2 3270 3058 211 305 17 0 chr12 15708772 15708831 -128573658 - L2 LINE L2 -26 3287 3228 * 336 48 0 0 chr12 15709080 15709122 -128573367 + (CA)n Simple_repeat Simple_repeat 2 43 0 260 260 10 67 chr12 15709537 15709641 -128572848 - MER102b DNA MER1_type 0 341 244 467 271 91 29 chr12 15710549 15710759 -128571730 + L2 LINE L2 3091 3313 0 205 306 9 0 chr12 15711521 15711629 -128570860 + (CACCC)n Simple_repeat Simple_repeat 3 111 0 806 278 120 32 chr12 15712270 15713396 -128569093 + L1MEc LINE L1 1446 2639 -3576 2177 105 0 7 chr12 15713396 15713690 -128568799 - AluSc SINE Alu -17 292 1 806 278 120 32 chr12 15713690 15713836 -128568653 + L1MEc LINE L1 2639 2771 -3444 469 226 60 5 chr12 15713858 15714057 -128568432 + L1MEc LINE L1 2874 3083 -3132 311 117 325 0 chr12 15714164 15714241 -128568248 - MER41A-int LTR ERV1 -7654 102 1 3746 93 6 0 chr12 15714250 15714790 -128567699 - MER41A LTR ERV1 -9 545 3 1371 148 13 0 chr12 15714874 15715110 -128567379 + L1M2 LINE L1 5428 5666 -634 192 77 0 0 chr12 15715974 15716000 -128566489 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1865 212 121 2 chr12 15716289 15716836 -128565653 + L1MC4 LINE L1 7431 8042 0 314 327 47 13 chr12 15717313 15717463 -128565026 - MIR SINE MIR -71 191 37 391 343 34 59 chr12 15718500 15718739 -128563750 - L1MEc LINE L1 -861 1715 1509 418 337 164 34 chr12 15719207 15719827 -128562662 - L2 LINE L2 -389 2925 2225 213 94 0 0 chr12 15720114 15720146 -128562343 + L2 LINE L2 3271 3302 -11 212 246 22 17 chr12 15721243 15721422 -128561067 + (TA)n Simple_repeat Simple_repeat 1 180 0 2038 215 96 19 chr12 15721519 15722146 -128560343 - L1MD1 LINE L1 -2 6240 5566 1501 241 18 65 chr12 15722146 15722375 -128560114 - L1MD1 LINE L1 -894 5252 5014 1646 193 25 0 chr12 15722375 15722660 -128559829 + AluJo SINE Alu 1 292 -20 1501 241 18 65 chr12 15722660 15723095 -128559394 - L1MD1 LINE L1 -1132 5014 4619 301 290 34 80 chr12 15723687 15723863 -128558626 + L1M2 LINE L1 756 923 -5926 462 88 0 0 chr12 15723863 15723931 -128558558 + (C)n Simple_repeat Simple_repeat 1 68 0 184 255 21 21 chr12 15724602 15724649 -128557840 - MER5A DNA MER1_type -136 53 7 832 276 208 36 chr12 15725879 15726437 -128556052 + HAL1 LINE L1 814 1467 -1040 247 258 21 43 chr12 15726458 15726551 -128555938 + HAL1 LINE L1 1825 1915 -592 2567 197 19 20 chr12 15727296 15727365 -128555124 - L1MCa LINE L1 -3707 2719 2651 2066 145 0 37 chr12 15727365 15727689 -128554800 - AluSx SINE Alu 0 312 1 2567 197 19 20 chr12 15727689 15728245 -128554244 - L1MCa LINE L1 -3775 2651 1652 1507 60 0 15 chr12 15728248 15728449 -128554040 - L1PA6 LINE L1 0 6154 5957 317 284 115 113 chr12 15728765 15729287 -128553202 + L1M2 LINE L1 537 1059 -5790 2139 215 40 34 chr12 15729413 15730060 -128552429 - L1MDa LINE L1 -4477 2063 1413 868 175 0 57 chr12 15730626 15730803 -128551686 - FRAM SINE Alu -11 165 1 204 270 217 43 chr12 15731087 15731202 -128551287 + L2 LINE L2 3138 3272 0 2564 71 0 0 chr12 15731224 15731535 -128550954 + AluY SINE Alu 1 311 0 688 175 31 25 chr12 15731952 15732112 -128550377 + PABL_B LTR ERV1 507 667 0 5705 75 83 19 chr12 15732112 15733006 -128549483 + HUERS-P1 LTR ERV1 2697 3647 -2616 3012 171 12 11 chr12 15734301 15734875 -128547614 - L1MA8 LINE L1 -3 6288 5714 223 374 7 14 chr12 15736971 15737110 -128545379 + CT-rich Low_complexity Low_complexity 5 142 0 321 298 22 50 chr12 15737175 15737356 -128545133 + CT-rich Low_complexity Low_complexity 2 177 0 25 0 0 0 chr12 15738209 15738234 -128544255 + AT_rich Low_complexity Low_complexity 1 25 0 210 373 37 15 chr12 15739273 15739407 -128543082 + MIR3 SINE MIR 71 207 -1 307 383 68 41 chr12 15740054 15740349 -128542140 - L2 LINE L2 -1 3271 2969 297 75 0 0 chr12 15741626 15741666 -128540823 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 1323 96 5 0 chr12 15741666 15741864 -128540625 - L1PA8 LINE L1 -24 6148 5950 25 31 0 0 chr12 15741871 15741903 -128540586 + AT_rich Low_complexity Low_complexity 1 32 0 213 251 0 53 chr12 15742867 15742961 -128539528 + GA-rich Low_complexity Low_complexity 1 89 0 200 333 54 62 chr12 15743665 15743794 -128538695 - MIR SINE MIR -123 139 12 301 281 156 0 chr12 15743980 15744076 -128538413 + L2 LINE L2 3203 3313 0 252 130 22 0 chr12 15744348 15744394 -128538095 - MLT1K LTR MaLR -18 570 524 821 246 33 6 chr12 15744597 15744780 -128537709 + MER5A DNA MER1_type 1 188 -1 3192 101 15 4 chr12 15745666 15746131 -128536358 + L1PA11 LINE L1 5705 6174 0 23 54 0 0 chr12 15746256 15746293 -128536196 + AT_rich Low_complexity Low_complexity 1 37 0 339 264 208 0 chr12 15746305 15746430 -128536059 - MIR SINE MIR 0 262 112 287 376 32 32 chr12 15747688 15747813 -128534676 - L2 LINE L2 -15 3257 3133 515 335 23 17 chr12 15747838 15748014 -128534475 - MIR SINE MIR -27 235 59 244 311 22 74 chr12 15747986 15748121 -128534368 - MIR SINE MIR -65 143 16 * 1608 209 43 45 chr12 15748866 15749329 -128533160 - MLT1C LTR MaLR 0 467 6 203 282 184 0 chr12 15749782 15749885 -128532604 + MIR SINE MIR 67 188 -74 411 38 0 0 chr12 15751504 15751557 -128530932 + (CA)n Simple_repeat Simple_repeat 2 54 0 360 88 0 0 chr12 15751557 15751614 -128530875 + (GA)n Simple_repeat Simple_repeat 1 57 0 811 121 141 78 chr12 15752885 15753091 -128529398 - MER20 DNA MER1_type 0 219 1 195 283 167 42 chr12 15753407 15753527 -128528962 + MIR3 SINE MIR 32 166 -42 1811 136 44 0 chr12 15755225 15755542 -128526947 + L1MB2 LINE L1 5839 6169 -2 187 308 39 13 chr12 15755797 15755875 -128526614 - L2 LINE L2 0 3313 3234 567 368 147 28 chr12 15755935 15756853 -128525636 + L2 LINE L2 1947 2973 -341 5065 157 18 28 chr12 15756954 15757361 -128525128 + L1MC2 LINE L1 5314 5723 -621 1650 183 161 0 chr12 15757361 15757727 -128524762 + MSTA LTR MaLR 4 428 0 5065 157 18 28 chr12 15757727 15758350 -128524139 + L1MC2 LINE L1 5723 6334 -10 219 268 14 0 chr12 15758709 15758780 -128523709 + (TAA)n Simple_repeat Simple_repeat 2 73 0 320 224 289 46 chr12 15758781 15758933 -128523556 - MIR SINE MIR -1 261 73 1135 176 0 0 chr12 15758943 15759119 -128523370 + AluJb SINE Alu 132 307 -5 181 283 58 58 chr12 15759910 15760030 -128522459 - MIR SINE MIR -73 189 70 706 266 96 13 chr12 15760246 15760475 -128522014 - LTR16C LTR ERVL -5 486 239 245 240 22 17 chr12 15760589 15760768 -128521721 + (TA)n Simple_repeat Simple_repeat 1 180 0 2220 217 93 14 chr12 15760865 15761491 -128520998 - L1MD1 LINE L1 -2 6240 5566 * 3784 254 31 42 chr12 15761489 15761721 -128520768 - L1MD1 LINE L1 -891 5255 5022 1660 189 25 0 chr12 15761721 15762006 -128520483 + AluJo SINE Alu 1 292 -20 3784 254 31 42 chr12 15762006 15763308 -128519181 - L1MD1 LINE L1 -1124 5022 3737 15636 197 20 22 chr12 15763712 15768979 -128513510 - L1PA15 LINE L1 -3 6813 1555 3380 155 16 76 chr12 15768979 15769714 -128512775 - LTR8 LTR ERV1 0 691 1 23261 78 33 15 chr12 15769764 15773245 -128509244 - HUERS-P1 LTR ERV1 -22 6241 2697 769 287 69 60 chr12 15773245 15773883 -128508606 - PABL_B LTR ERV1 0 667 24 18333 86 20 11 chr12 15773962 15774338 -128508151 - HUERS-P1 LTR ERV1 -3564 2699 2328 203 79 26 0 chr12 15774338 15774376 -128508113 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 18333 86 20 11 chr12 15774376 15776673 -128505816 - HUERS-P1 LTR ERV1 -3935 2328 1 3216 161 20 75 chr12 15776673 15777404 -128505085 - LTR8 LTR ERV1 0 691 1 2772 273 44 26 chr12 15777404 15778480 -128504009 - L1PA15 LINE L1 -5229 1558 2 196 376 71 7 chr12 15779368 15779509 -128502980 + MIR SINE MIR 2 151 -111 387 283 0 0 chr12 15779677 15779769 -128502720 - MER5A DNA MER1_type -85 104 13 2349 86 0 13 chr12 15780253 15780556 -128501933 - AluSp SINE Alu -12 301 3 627 226 9 91 chr12 15780574 15780769 -128501720 + L1MA4 LINE L1 5995 6171 -129 1609 135 92 8 chr12 15780769 15781052 -128501437 + AluSg SINE Alu 1 305 0 627 226 9 91 chr12 15781052 15781085 -128501404 + L1MA4 LINE L1 6171 6205 -95 329 337 96 27 chr12 15782112 15782299 -128500190 - L1ME LINE L1 -367 5803 5604 274 296 56 19 chr12 15782306 15782522 -128499967 - L1ME LINE L1 -822 5324 5101 * 709 224 57 0 chr12 15782516 15782708 -128499781 + L1MA4 LINE L1 6087 6289 -11 268 327 55 21 chr12 15782739 15783054 -128499435 - L1ME LINE L1 -1077 5069 4733 435 308 100 16 chr12 15783101 15783351 -128499138 + L1M4 LINE L1 4574 4844 -1302 1192 175 68 5 chr12 15783421 15783627 -128498862 + MLT2B2 LTR ERVL 1 219 -296 1005 297 35 10 chr12 15783916 15784309 -128498180 + L1MC4 LINE L1 6500 6977 -895 975 89 0 0 chr12 15784429 15784576 -128497913 + AluSc SINE Alu 158 304 0 425 271 49 74 chr12 15784615 15784899 -128497590 + L1MC5 LINE L1 7640 7916 -45 441 153 22 44 chr12 15785745 15785882 -128496607 + CT-rich Low_complexity Low_complexity 3 136 0 288 214 107 38 chr12 15786664 15786795 -128495694 - HAL1 LINE L1 -127 2380 2241 404 216 49 0 chr12 15786871 15786973 -128495516 - HAL1 LINE L1 -398 2109 2003 519 295 54 6 chr12 15789092 15789258 -128493231 - MER5B DNA MER1_type -1 177 4 288 305 110 8 chr12 15789483 15789601 -128492888 - MIR SINE MIR -114 148 19 340 219 101 59 chr12 15789811 15789930 -128492559 + MIR SINE MIR 9 132 -130 764 256 46 25 chr12 15791558 15791796 -128490693 + MIR SINE MIR 2 244 -18 267 339 104 0 chr12 15793596 15793711 -128488778 + MIR SINE MIR 21 147 -115 3927 151 12 29 chr12 15793880 15794158 -128488331 - LTR51 LTR ERV1 -1 670 389 553 91 0 0 chr12 15794158 15794235 -128488254 - MADE1 DNA Mariner -3 77 1 3927 151 12 29 chr12 15794235 15794638 -128487851 - LTR51 LTR ERV1 -282 389 1 2318 96 3 0 chr12 15796288 15796591 -128485898 + AluSp SINE Alu 1 304 -9 2738 245 69 9 chr12 15796791 15797727 -128484762 - L1ME2 LINE L1 -10 6223 5233 280 186 127 0 chr12 15797748 15797866 -128484623 - L1ME2 LINE L1 -2906 3309 3177 452 283 46 85 chr12 15797913 15798196 -128484293 - L1ME2 LINE L1 -3329 2886 2615 853 246 46 4 chr12 15798631 15798911 -128483578 - L1ME2 LINE L1 -3638 2577 2286 13617 185 36 25 chr12 15798927 15799855 -128482634 - L1MA4A LINE L1 -6 6999 6083 2293 78 0 0 chr12 15799855 15800138 -128482351 - AluSc SINE Alu -24 285 3 13617 185 36 25 chr12 15800138 15800201 -128482288 - L1MA4A LINE L1 -922 6083 6022 228 35 0 0 chr12 15800201 15800230 -128482259 + (TTG)n Simple_repeat Simple_repeat 2 30 0 13617 185 36 25 chr12 15800230 15801360 -128481129 - L1MA4A LINE L1 -983 6022 4906 749 43 0 0 chr12 15801360 15801452 -128481037 - L1PA5 LINE L1 -9 6145 6054 13617 185 36 25 chr12 15801452 15805680 -128476809 - L1MA4A LINE L1 -2099 4906 568 284 301 55 27 chr12 15805699 15805845 -128476644 - L1ME2 LINE L1 -6140 256 107 396 199 81 99 chr12 15806071 15806232 -128476257 + MER5A DNA MER1_type 21 178 -11 1569 186 100 0 chr12 15807393 15807704 -128474785 + MER7A DNA MER2_type 2 341 -5 1555 218 29 35 chr12 15808035 15808094 -128474395 - MLT1A2 LTR MaLR 0 374 316 3840 113 6 2 chr12 15808094 15808617 -128473872 + MER1A DNA MER1_type 3 527 0 1555 218 29 35 chr12 15808617 15808933 -128473556 - MLT1A2 LTR MaLR -58 316 1 6803 70 7 1 chr12 15810133 15811529 -128470960 + L1PA7 LINE L1 4753 6154 0 315 309 27 18 chr12 15811557 15811667 -128470822 + MIR3 SINE MIR 85 195 -13 2238 161 84 0 chr12 15812651 15813068 -128469421 + LTR47A LTR ERVL 1 452 0 184 320 141 0 chr12 15813627 15813705 -128468784 + L2 LINE L2 3137 3225 -47 652 165 0 47 chr12 15814206 15814333 -128468156 + AluSq/x SINE Alu 1 121 -191 9029 165 32 13 chr12 15814333 15815941 -128466548 + L1PBa LINE L1 1107 2682 -4180 4982 37 2 0 chr12 15815941 15816540 -128465949 + L1PA4 LINE L1 5555 6154 -1 9029 165 32 13 chr12 15816540 15817868 -128464621 + L1PBa LINE L1 2682 4264 -2598 239 231 93 56 chr12 15817872 15817980 -128464509 - L1ME LINE L1 -5120 950 839 32 0 0 0 chr12 15818172 15818204 -128464285 + AT_rich Low_complexity Low_complexity 1 32 0 1092 148 20 30 chr12 15818219 15818272 -128464217 - L1MA4 LINE L1 -44 6256 6204 1988 94 3 28 chr12 15818272 15818558 -128463931 + AluSp SINE Alu 23 301 -12 1092 148 20 30 chr12 15818558 15818706 -128463783 - L1MA4 LINE L1 -96 6204 6057 1111 219 27 10 chr12 15819429 15819754 -128462735 + MLT1A1 LTR MaLR 1 363 -2 2138 108 0 53 chr12 15820796 15821119 -128461370 + AluSx SINE Alu 1 306 -6 824 240 22 0 chr12 15821415 15821598 -128460891 - MER5A DNA MER1_type -1 188 2 245 298 24 24 chr12 15821718 15821802 -128460687 + MIR SINE MIR 47 130 -78 349 280 51 8 chr12 15823020 15823138 -128459351 - MER94 DNA DNA -7 127 5 32 43 0 0 chr12 15823960 15824006 -128458483 + AT_rich Low_complexity Low_complexity 1 46 0 186 267 50 17 chr12 15824101 15824161 -128458328 + MER5B DNA MER1_type 65 126 -52 1725 197 54 8 chr12 15824174 15824545 -128457944 - MLT1B LTR MaLR -2 388 1 23 0 0 0 chr12 15825049 15825072 -128457417 + AT_rich Low_complexity Low_complexity 1 23 0 800 189 0 0 chr12 15825073 15825195 -128457294 - FLAM_C SINE Alu -19 124 3 458 336 47 32 chr12 15825401 15825654 -128456835 + MIR SINE MIR 5 261 -1 977 211 112 74 chr12 15825929 15826252 -128456237 - MLT1D LTR MaLR -113 392 58 1454 198 160 7 chr12 15826382 15826807 -128455682 - LTR54B LTR ERV1 -2 496 7 2248 181 2 5 chr12 15826996 15827393 -128455096 - MER57A LTR ERV1 0 403 8 242 269 11 32 chr12 15827449 15827542 -128454947 + GA-rich Low_complexity Low_complexity 4 94 0 401 262 113 85 chr12 15828563 15828845 -128453644 - L1ME4a LINE L1 -201 5920 5631 1162 184 0 34 chr12 15829064 15829303 -128453186 - AluJb SINE Alu -7 305 75 229 182 36 0 chr12 15829534 15829589 -128452900 + A-rich Low_complexity Low_complexity 5 61 0 323 341 15 15 chr12 15830157 15830292 -128452197 + MLT1K LTR MaLR 115 249 -339 226 0 59 0 chr12 15830356 15830390 -128452099 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 266 277 227 21 chr12 15830406 15830547 -128451942 + MLT1K LTR MaLR 419 588 0 397 291 18 9 chr12 15831970 15832080 -128450409 - MER5A DNA MER1_type -31 158 48 2012 152 45 20 chr12 15832651 15833006 -128449483 + THE1B LTR MaLR 1 364 0 2251 88 0 13 chr12 15833721 15834028 -128448461 - AluY SINE Alu -8 303 1 198 339 0 31 chr12 15834157 15834222 -128448267 + MIR SINE MIR 21 83 -125 927 164 32 25 chr12 15834343 15834530 -128447959 + MER33 DNA MER1_type 1 169 -86 4440 64 40 0 chr12 15834544 15835121 -128447368 - LTR17 LTR ERV1 0 780 181 6988 61 0 1 chr12 15835129 15836733 -128445756 - L1PA5 LINE L1 -2 6152 4550 4469 32 0 4 chr12 15836733 15837260 -128445229 + L1PA5 LINE L1 4010 4536 -1610 1500 55 0 0 chr12 15837260 15837443 -128445046 - LTR17 LTR ERV1 -597 183 1 1325 151 0 13 chr12 15837524 15837756 -128444733 - L1PA16 LINE L1 0 6166 5938 21 0 0 0 chr12 15837769 15837790 -128444699 + AT_rich Low_complexity Low_complexity 1 21 0 281 151 38 0 chr12 15837825 15837878 -128444611 + MER33 DNA MER1_type 308 362 -1 321 318 23 8 chr12 15838054 15838183 -128444306 - MER103 DNA DNA -4 162 32 2174 104 0 13 chr12 15839066 15839373 -128443116 - AluSq SINE Alu -10 303 1 32 67 0 0 chr12 15839644 15839704 -128442785 + AT_rich Low_complexity Low_complexity 1 60 0 4960 233 73 40 chr12 15839821 15842109 -128440380 - L1ME1 LINE L1 -11 6224 3825 306 50 0 0 chr12 15842109 15842149 -128440340 + (TG)n Simple_repeat Simple_repeat 1 40 0 4960 233 73 40 chr12 15842149 15842284 -128440205 - L1ME1 LINE L1 -2410 3825 3696 2106 267 66 13 chr12 15842294 15843458 -128439031 - L1ME1 LINE L1 -3102 3113 1916 2209 285 57 50 chr12 15843464 15843720 -128438769 - L1ME1 LINE L1 -4671 1725 1472 2028 150 0 3 chr12 15843720 15844033 -128438456 - AluSx SINE Alu 0 312 1 2209 285 57 50 chr12 15844033 15845223 -128437266 - L1ME1 LINE L1 -4924 1472 269 180 0 0 0 chr12 15845229 15845249 -128437240 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1849 158 0 0 chr12 15845258 15845536 -128436953 - AluSx SINE Alu -32 280 3 757 89 28 39 chr12 15845562 15845741 -128436748 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 809 244 5 24 chr12 15845764 15845973 -128436516 - L1ME1 LINE L1 -6143 253 49 264 367 22 11 chr12 15846641 15846731 -128435758 + L2 LINE L2 2941 3031 -241 517 285 59 54 chr12 15846856 15847077 -128435412 + MIR SINE MIR 3 224 -38 212 211 19 0 chr12 15847339 15847391 -128435098 + (TA)n Simple_repeat Simple_repeat 2 54 0 2491 64 0 6 chr12 15849910 15850223 -128432266 - AluY SINE Alu 0 311 1 535 217 77 0 chr12 15850355 15850498 -128431991 - MER103 DNA DNA -10 156 3 1936 126 37 3 chr12 15851127 15851421 -128431068 - AluSx SINE Alu -8 304 1 574 328 48 61 chr12 15852035 15852495 -128429994 + HAL1 LINE L1 1071 1524 -983 407 278 156 35 chr12 15852659 15852947 -128429542 + L1ME LINE L1 3038 3360 -2786 341 307 90 71 chr12 15853337 15853604 -128428885 + L1ME LINE L1 4741 5012 -1134 342 300 120 51 chr12 15853799 15854175 -128428314 + L1ME LINE L1 5255 5659 -503 843 150 169 0 chr12 15854196 15854356 -128428133 + MER5A DNA MER1_type 1 187 -2 39 22 0 0 chr12 15854544 15854590 -128427899 + AT_rich Low_complexity Low_complexity 1 46 0 954 254 62 0 chr12 15854622 15854862 -128427627 - MIR SINE MIR 0 262 8 183 176 24 153 chr12 15854797 15854882 -128427607 - L2 LINE L2 -923 2391 2318 * 243 0 0 0 chr12 15855060 15855087 -128427402 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 316 321 164 0 chr12 15856692 15856832 -128425657 + MIR3 SINE MIR 46 208 0 360 103 0 0 chr12 15857111 15857169 -128425320 + (CA)n Simple_repeat Simple_repeat 1 58 0 2185 145 57 5 chr12 15857962 15858369 -128424120 + MSTA LTR MaLR 1 428 0 22 35 0 0 chr12 15858892 15858921 -128423568 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr12 15859014 15859046 -128423443 + AT_rich Low_complexity Low_complexity 1 32 0 337 290 84 19 chr12 15859093 15859355 -128423134 + L1M4 LINE L1 4421 4699 -1447 645 248 73 24 chr12 15859657 15859863 -128422626 + L2 LINE L2 3098 3313 0 630 295 6 0 chr12 15861111 15861294 -128421195 - MIR SINE MIR -39 223 40 22 0 0 0 chr12 15861466 15861488 -128421001 + AT_rich Low_complexity Low_complexity 1 22 0 2276 84 13 7 chr12 15862234 15862542 -128419947 - AluSg SINE Alu 0 310 1 103 66 0 13 chr12 15862914 15863141 -128419348 + AT_rich Low_complexity Low_complexity 1 224 0 21 36 0 0 chr12 15863774 15863802 -128418687 + AT_rich Low_complexity Low_complexity 1 28 0 312 159 16 16 chr12 15864100 15864163 -128418326 - MLT1G LTR MaLR -12 578 516 29 0 0 0 chr12 15865182 15865211 -128417278 + AT_rich Low_complexity Low_complexity 1 29 0 272 159 0 16 chr12 15865566 15865629 -128416860 + (TA)n Simple_repeat Simple_repeat 1 62 0 2368 68 16 3 chr12 15866156 15866463 -128416026 - AluY SINE Alu 0 311 1 267 326 95 0 chr12 15866657 15866752 -128415737 + L2 LINE L2 3208 3311 -2 389 292 70 22 chr12 15867315 15867500 -128414989 - MIR SINE MIR -66 196 3 217 159 136 0 chr12 15868928 15868972 -128413517 - L2 LINE L2 0 3313 3264 275 338 107 28 chr12 15869078 15869395 -128413094 - L2 LINE L2 -340 2974 2633 235 220 20 0 chr12 15869532 15869582 -128412907 + (TCCA)n Simple_repeat Simple_repeat 1 51 0 266 227 80 13 chr12 15869582 15869657 -128412832 - L2 LINE L2 -2 3311 3232 23 86 0 0 chr12 15870743 15870801 -128411688 + AT_rich Low_complexity Low_complexity 1 58 0 372 356 22 40 chr12 15871394 15871669 -128410820 - L2 LINE L2 -446 2868 2599 3035 172 25 20 chr12 15871724 15872330 -128410159 - L1MC3 LINE L1 -1861 6342 5734 * 10629 198 48 34 chr12 15872326 15872592 -128409897 - L1MC1 LINE L1 0 6613 6352 270 81 0 0 chr12 15872592 15872629 -128409860 + (TA)n Simple_repeat Simple_repeat 2 38 0 10629 198 48 34 chr12 15872629 15874048 -128408441 - L1MC1 LINE L1 -261 6352 4955 1994 153 13 0 chr12 15874048 15874356 -128408133 - AluSx SINE Alu 0 312 1 10629 198 48 34 chr12 15874356 15878078 -128404411 - L1MC1 LINE L1 -1658 4955 942 4063 249 21 27 chr12 15878073 15879388 -128403101 - L1MC3 LINE L1 -812 5752 4445 * 251 237 214 0 chr12 15879377 15879522 -128402967 - L1MC3 LINE L1 -2462 4102 3928 * 1069 239 12 16 chr12 15879530 15879773 -128402716 + MLT1A1 LTR MaLR 1 242 -123 2247 215 49 63 chr12 15879774 15880598 -128401891 - L1MC3 LINE L1 -4433 2312 1302 1479 118 0 0 chr12 15880598 15880802 -128401687 - AluY SINE Alu -9 302 99 2247 215 49 63 chr12 15880802 15881010 -128401479 - L1MC3 LINE L1 -5443 1302 1093 555 248 16 33 chr12 15881022 15881244 -128401245 - L1MC3 LINE L1 -5846 343 1 345 247 36 0 chr12 15882718 15882884 -128399605 + (TA)n Simple_repeat Simple_repeat 2 173 0 267 261 15 0 chr12 15882939 15883004 -128399485 - L2 LINE L2 0 3272 3207 1566 232 45 49 chr12 15883021 15883509 -128398980 - L2 LINE L2 -1 3312 2827 1813 268 113 6 chr12 15883519 15884157 -128398332 - L2 LINE L2 -818 2496 1791 438 267 33 0 chr12 15885788 15885908 -128396581 - MER94 DNA DNA -10 124 1 399 319 30 24 chr12 15885938 15886104 -128396385 - MIR SINE MIR -95 167 1 22 0 0 0 chr12 15886513 15886535 -128395954 + AT_rich Low_complexity Low_complexity 1 22 0 2555 58 0 3 chr12 15888302 15888614 -128393875 - AluY SINE Alu 0 311 1 22 70 0 0 chr12 15888785 15888828 -128393661 + AT_rich Low_complexity Low_complexity 1 43 0 198 335 72 26 chr12 15888873 15889025 -128393464 - L2 LINE L2 -39 3233 3075 282 284 49 0 chr12 15889313 15889394 -128393095 - MER117 DNA MER1_type -36 161 77 27 0 0 0 chr12 15889686 15889713 -128392776 + AT_rich Low_complexity Low_complexity 1 27 0 515 269 82 12 chr12 15889806 15889977 -128392512 + MIR SINE MIR 49 231 -31 441 284 222 0 chr12 15889994 15890195 -128392294 - MIR SINE MIR 0 262 19 1899 179 89 21 chr12 15893207 15893644 -128388845 + MLT1C LTR MaLR 1 467 0 1313 199 63 102 chr12 15895247 15895372 -128387117 - Charlie4a DNA MER1_type -1456 505 377 620 13 0 0 chr12 15895372 15895448 -128387041 + L1PA2 LINE L1 6074 6149 -6 1313 199 63 102 chr12 15895448 15895844 -128386645 - Charlie4a DNA MER1_type -1584 377 4 545 272 77 35 chr12 15896229 15896398 -128386091 + MIR SINE MIR 27 202 -60 3382 197 44 95 chr12 15897238 15897721 -128384768 - L1MC4 LINE L1 -6 8036 7530 1918 176 0 0 chr12 15897721 15898027 -128384462 - AluJo SINE Alu -6 306 1 3382 197 44 95 chr12 15898027 15898293 -128384196 - L1MC4 LINE L1 -512 7530 7252 180 0 0 0 chr12 15898293 15898313 -128384176 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 3382 197 44 95 chr12 15898313 15898741 -128383748 - L1MC4 LINE L1 -790 7252 6918 2409 66 0 3 chr12 15898987 15899288 -128383201 + AluY SINE Alu 1 300 -11 240 274 52 89 chr12 15899943 15900078 -128382411 + MIR SINE MIR 83 212 -50 21 0 0 0 chr12 15900086 15900107 -128382382 + AT_rich Low_complexity Low_complexity 1 21 0 1962 138 0 3 chr12 15900302 15900675 -128381814 + AluSc SINE Alu 3 374 0 382 340 13 13 chr12 15901051 15901201 -128381288 - L2 LINE L2 0 3313 3164 * 213 39 0 0 chr12 15901208 15901234 -128381255 + (TAA)n Simple_repeat Simple_repeat 2 27 0 569 286 85 5 chr12 15901234 15901423 -128381066 - MIR SINE MIR -7 255 48 467 305 46 0 chr12 15902191 15902322 -128380167 - MIR3 SINE MIR -33 175 39 614 275 138 4 chr12 15902996 15903243 -128379246 - LTR33A LTR ERVL 0 523 244 530 256 55 24 chr12 15903375 15903539 -128378950 - LTR33A LTR ERVL -337 186 18 186 329 12 24 chr12 15905855 15905937 -128376552 + MIR SINE MIR 73 153 -109 603 112 0 0 chr12 15905939 15906037 -128376452 + (TGG)n Simple_repeat Simple_repeat 1 98 0 718 0 0 0 chr12 15906299 15906383 -128376106 - L1PA2 LINE L1 -3 6152 6069 801 183 61 17 chr12 15906817 15906997 -128375492 - MER5A DNA MER1_type -1 188 1 340 298 46 71 chr12 15907757 15907960 -128374529 + MIR SINE MIR 16 212 -50 238 300 136 0 chr12 15908239 15908349 -128374140 - MIR SINE MIR -75 187 63 207 95 71 0 chr12 15908425 15908467 -128374022 + T-rich Low_complexity Low_complexity 2 46 0 1872 193 95 25 chr12 15908670 15909156 -128373333 + MLT2B1 LTR ERVL 1 520 0 423 0 0 0 chr12 15909366 15909413 -128373076 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr12 15909610 15909633 -128372856 + AT_rich Low_complexity Low_complexity 1 23 0 903 162 21 90 chr12 15909662 15909896 -128372593 + L1MC1 LINE L1 6116 6333 0 4888 183 34 18 chr12 15911412 15913395 -128369094 - L1MB8 LINE L1 -6 6670 4658 5438 228 55 47 chr12 15913414 15913921 -128368568 - L1MB8 LINE L1 -4550 2096 1595 198 0 0 0 chr12 15913921 15913943 -128368546 + (TG)n Simple_repeat Simple_repeat 2 23 0 5438 228 55 47 chr12 15913943 15914779 -128367710 - L1MB8 LINE L1 -5051 1595 765 495 0 0 0 chr12 15914779 15914834 -128367655 + (TG)n Simple_repeat Simple_repeat 2 56 0 5438 228 55 47 chr12 15914834 15915591 -128366898 - L1MB8 LINE L1 -5881 765 16 300 373 4 66 chr12 15915751 15915995 -128366494 - L3 LINE CR1 -364 1213 985 28 61 0 0 chr12 15916193 15916242 -128366247 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr12 15916363 15916384 -128366105 + AT_rich Low_complexity Low_complexity 1 21 0 2065 142 0 0 chr12 15916616 15916912 -128365577 + AluSx SINE Alu 1 296 -16 183 42 0 0 chr12 15917281 15917305 -128365184 + (T)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr12 15917416 15917444 -128365045 + AT_rich Low_complexity Low_complexity 1 28 0 443 224 0 90 chr12 15917963 15918097 -128364392 + MIR SINE MIR 31 152 -110 21 0 0 0 chr12 15918285 15918306 -128364183 + AT_rich Low_complexity Low_complexity 1 21 0 917 232 50 9 chr12 15920920 15921140 -128361349 + MIR SINE MIR 34 262 0 2174 117 3 0 chr12 15921503 15921803 -128360686 - AluSp SINE Alu -12 301 1 1612 180 3 22 chr12 15922238 15922554 -128359935 + AluJo SINE Alu 1 310 -2 21 36 0 0 chr12 15922834 15922862 -128359627 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr12 15923139 15923168 -128359321 + AT_rich Low_complexity Low_complexity 1 29 0 302 239 28 14 chr12 15924742 15924813 -128357676 - MER5B DNA MER1_type -106 72 1 950 147 82 27 chr12 15925107 15925291 -128357198 + L1PA16 LINE L1 5973 6166 0 358 280 108 19 chr12 15925301 15925515 -128356974 + L1M4 LINE L1 3221 3453 -2693 37 23 0 0 chr12 15925658 15925702 -128356787 + AT_rich Low_complexity Low_complexity 1 44 0 23 78 0 0 chr12 15925826 15925877 -128356612 + AT_rich Low_complexity Low_complexity 1 51 0 304 179 26 0 chr12 15925990 15926068 -128356421 + GA-rich Low_complexity Low_complexity 3 82 0 2108 129 0 0 chr12 15927009 15927304 -128355185 - AluSq SINE Alu -18 295 1 343 337 65 35 chr12 15927468 15927637 -128354852 - MIR3 SINE MIR -11 197 24 930 287 125 34 chr12 15928495 15929158 -128353331 + L2 LINE L2 2602 3310 -3 1446 132 45 0 chr12 15929658 15929878 -128352611 + MER30 DNA MER1_type 1 230 0 983 285 96 0 chr12 15930181 15930462 -128352027 - MLT1E LTR MaLR 0 593 286 491 222 0 20 chr12 15930476 15930575 -128351914 - MLT1E LTR MaLR -430 163 67 286 340 123 33 chr12 15930857 15931069 -128351420 + L2 LINE L2 2651 2881 -433 2356 156 57 0 chr12 15931452 15931857 -128350632 + MSTA LTR MaLR 1 428 0 3166 216 102 42 chr12 15931929 15932964 -128349525 - L1MC4a LINE L1 0 7808 6711 507 33 0 0 chr12 15934997 15935058 -128347431 + (TG)n Simple_repeat Simple_repeat 2 62 0 423 275 36 99 chr12 15936456 15936678 -128345811 - MIR SINE MIR -18 244 37 532 290 9 55 chr12 15936886 15937103 -128345386 + MIR SINE MIR 32 238 -24 1521 234 76 39 chr12 15938032 15938493 -128343996 - MLT1D LTR MaLR -27 478 1 424 193 45 142 chr12 15938493 15938669 -128343820 - MLT1D-int LTR MaLR 0 1371 1213 183 204 0 0 chr12 15939104 15939153 -128343336 + (CA)n Simple_repeat Simple_repeat 2 50 0 513 291 92 39 chr12 15940754 15940960 -128341529 + MIR SINE MIR 23 239 -23 263 147 0 77 chr12 15940993 15941163 -128341326 + (TAA)n Simple_repeat Simple_repeat 1 157 0 329 286 38 53 chr12 15941219 15941352 -128341137 - MIR SINE MIR -62 200 70 5472 172 5 44 chr12 15941540 15942831 -128339658 - L1MA10 LINE L1 -1 6333 5086 5034 187 25 20 chr12 15942834 15943956 -128338533 + L1MA10 LINE L1 3953 5079 -1067 632 212 67 12 chr12 15944395 15944560 -128337929 + L1MD3 LINE L1 7812 7985 -10 339 271 74 8 chr12 15945735 15945857 -128336632 + L2 LINE L2 3161 3290 -23 879 249 0 0 chr12 15945941 15946130 -128336359 + MER5A DNA MER1_type 1 189 0 1021 345 98 23 chr12 15946685 15946883 -128335606 + L3 LINE CR1 692 874 -703 243 0 0 0 chr12 15946883 15946910 -128335579 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1021 345 98 23 chr12 15946910 15947364 -128335125 + L3 LINE CR1 874 1393 -184 1691 183 66 29 chr12 15947376 15947753 -128334736 + MLT2C1 LTR ERVL 7 397 0 190 325 13 26 chr12 15947776 15947853 -128334636 + L3 LINE CR1 1409 1484 -93 290 302 52 10 chr12 15947947 15948043 -128334446 - L2 LINE L2 -18 3295 3196 187 200 0 0 chr12 15948090 15948125 -128334364 + L2 LINE L2 3274 3308 -5 191 100 0 50 chr12 15948169 15948209 -128334280 + (CATA)n Simple_repeat Simple_repeat 2 39 0 182 316 18 0 chr12 15949285 15949342 -128333147 + MIR SINE MIR 37 94 -114 2889 184 21 10 chr12 15950625 15950730 -128331759 + L1MA7 LINE L1 5681 5783 -508 396 0 0 0 chr12 15950730 15950774 -128331715 + (CA)n Simple_repeat Simple_repeat 2 45 0 2889 184 21 10 chr12 15950774 15951272 -128331217 + L1MA7 LINE L1 5783 6291 0 2918 6 0 0 chr12 15951488 15951804 -128330685 - AluYb8 SINE Alu -2 316 1 432 55 0 0 chr12 15953439 15953494 -128328995 + (TG)n Simple_repeat Simple_repeat 1 55 0 377 216 240 0 chr12 15953639 15953764 -128328725 - MIR SINE MIR -18 244 90 944 171 0 13 chr12 15954145 15954303 -128328186 + FRAM SINE Alu 1 155 -21 258 266 38 25 chr12 15954596 15954675 -128327814 - MIR3 SINE MIR -16 192 113 533 325 68 46 chr12 15954692 15955191 -128327298 - L2 LINE L2 -1096 2218 1709 198 383 32 21 chr12 15956443 15956537 -128325952 - L2 LINE L2 -4 3268 3174 274 303 56 0 chr12 15957093 15957182 -128325307 - MIR SINE MIR -6 256 163 612 296 152 76 chr12 15957884 15958675 -128323814 - L3 LINE CR1 -37 1540 690 283 301 169 0 chr12 15961124 15961260 -128321229 - MIR SINE MIR -52 210 52 263 278 42 62 chr12 15961432 15961576 -128320913 - MIR SINE MIR -31 231 91 358 307 31 110 chr12 15961967 15962195 -128320294 + L2 LINE L2 3063 3272 0 269 314 32 24 chr12 15962263 15962387 -128320102 - L2 LINE L2 -1012 2302 2178 21 0 0 0 chr12 15962501 15962522 -128319967 + AT_rich Low_complexity Low_complexity 1 21 0 312 131 0 33 chr12 15962600 15962661 -128319828 + AluSp SINE Alu 75 133 -170 2050 140 0 0 chr12 15962664 15962956 -128319533 + AluSx SINE Alu 1 292 -20 1236 255 117 47 chr12 15963507 15964252 -128318237 - HAL1b LINE L1 -17 1331 535 228 286 14 0 chr12 15965068 15965138 -128317351 + L1ME LINE L1 196 266 -5939 6416 18 0 36 chr12 15965419 15966205 -128316284 + L1PA2 LINE L1 5396 6153 -2 758 286 46 44 chr12 15966462 15966561 -128315928 + L1ME LINE L1 655 752 -5463 1141 187 107 64 chr12 15966561 15966935 -128315554 - MLT1B LTR MaLR 0 390 1 758 286 46 44 chr12 15966935 15967698 -128314791 + L1ME LINE L1 752 1495 -4720 2455 82 3 0 chr12 15967946 15968252 -128314237 + AluSp SINE Alu 3 309 -4 1009 251 60 36 chr12 15968252 15968782 -128313707 + L1ME LINE L1 1889 2431 -3965 207 179 0 0 chr12 15970330 15970369 -128312120 + (CA)n Simple_repeat Simple_repeat 2 40 0 22 89 0 0 chr12 15970884 15970929 -128311560 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr12 15972044 15972067 -128310422 + AT_rich Low_complexity Low_complexity 1 23 0 1186 229 53 15 chr12 15972685 15973025 -128309464 + MLT1B LTR MaLR 33 385 -5 5390 120 16 27 chr12 15974544 15975428 -128307061 - L1PB1 LINE L1 -4 6147 5274 1943 144 10 10 chr12 15975654 15975952 -128306537 - AluSx SINE Alu -14 298 1 188 294 88 0 chr12 15976838 15976906 -128305583 - MIR SINE MIR -58 150 77 442 326 15 0 chr12 15977009 15977141 -128305348 - L2 LINE L2 -1 3271 3138 306 284 60 17 chr12 15978394 15978510 -128303979 - MLT1J2 LTR MaLR -272 178 58 370 250 11 0 chr12 15978601 15978689 -128303800 - MIR SINE MIR -111 151 63 198 143 0 0 chr12 15980604 15980639 -128301850 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 225 363 55 14 chr12 15980984 15981130 -128301359 + L2 LINE L2 2094 2245 -1069 1514 201 0 34 chr12 15981505 15981798 -128300691 - AluJo SINE Alu -21 291 9 684 362 37 28 chr12 15982407 15982871 -128299618 + L2 LINE L2 2225 2692 -622 231 267 67 38 chr12 15983689 15983794 -128298695 + MLT1K LTR MaLR 481 588 0 318 239 122 52 chr12 15983981 15984194 -128298295 + MER5C DNA MER1_type 58 285 -39 285 220 20 10 chr12 15984219 15984319 -128298170 + GA-rich Low_complexity Low_complexity 5 105 0 299 184 0 0 chr12 15984431 15984480 -128298009 - Alu SINE Alu -254 49 1 209 279 16 126 chr12 15984632 15984886 -128297603 - L2 LINE L2 -649 2665 2440 610 328 84 42 chr12 15984937 15985245 -128297244 - MLT1K LTR MaLR -109 479 159 244 258 15 30 chr12 15985347 15985413 -128297076 + MER91A DNA MER1_type 35 99 -97 328 153 33 20 chr12 15985611 15985761 -128296728 + (TA)n Simple_repeat Simple_repeat 1 152 0 2575 41 0 0 chr12 15985761 15986055 -128296434 - AluY SINE Alu -17 294 1 236 204 60 17 chr12 15986417 15986500 -128295989 - MIR SINE MIR -67 141 91 701 169 29 7 chr12 15987050 15987186 -128295303 + MER5B DNA MER1_type 1 139 -39 407 301 24 8 chr12 15987208 15987331 -128295158 - MER5A DNA MER1_type 0 189 65 22 0 0 0 chr12 15987797 15987819 -128294670 + AT_rich Low_complexity Low_complexity 1 22 0 1766 120 66 15 chr12 15988162 15988436 -128294053 - AluSx SINE Alu -1 311 24 350 277 102 23 chr12 15989871 15990048 -128292441 + MIR SINE MIR 72 262 0 393 133 0 0 chr12 15990436 15990511 -128291978 + (TG)n Simple_repeat Simple_repeat 2 76 0 965 252 37 8 chr12 15991366 15991608 -128290881 - MIR SINE MIR -8 254 6 279 284 14 0 chr12 15992620 15992694 -128289795 + LTR16A1 LTR ERVL 5 79 -378 806 270 42 12 chr12 15992770 15993029 -128289460 + LTR16A1 LTR ERVL 191 457 0 25 31 0 0 chr12 15993615 15993647 -128288842 + AT_rich Low_complexity Low_complexity 1 32 0 537 265 55 32 chr12 15994777 15994996 -128287493 + Charlie7 DNA MER1_type 51 274 -2338 764 251 170 19 chr12 15995015 15995338 -128287151 + Charlie7 DNA MER1_type 407 778 -1834 633 197 14 20 chr12 15995348 15995495 -128286994 + Charlie7 DNA MER1_type 1644 1789 -823 6369 6 0 1 chr12 15995501 15996213 -128286276 - L1PA2 LINE L1 -3 6152 5442 3720 23 1 0 chr12 15996213 15996700 -128285789 + L1P LINE L1 4940 5427 -728 1219 264 63 9 chr12 15996700 15997163 -128285326 + Charlie7 DNA MER1_type 1773 2260 -352 6304 259 65 20 chr12 15997163 16000098 -128282391 + L1MEc LINE L1 37 3214 -3001 1053 187 9 57 chr12 16000098 16000328 -128282161 + MER20 DNA MER1_type 1 219 0 6304 259 65 20 chr12 16000328 16000946 -128281543 + L1MEc LINE L1 3214 3802 -2413 2392 254 67 7 chr12 16000978 16001784 -128280705 + L1M4 LINE L1 4519 5372 -774 969 161 52 35 chr12 16001786 16001918 -128280571 - MER44D DNA MER2_type -1987 504 376 357 24 0 0 chr12 16001918 16001960 -128280529 + (CA)n Simple_repeat Simple_repeat 1 42 0 969 161 52 35 chr12 16001960 16002057 -128280432 - MER44D DNA MER2_type -2115 376 1 562 168 15 84 chr12 16002537 16002668 -128279821 + L1PA16 LINE L1 6044 6165 -1 1958 244 25 17 chr12 16002708 16003224 -128279265 - L1ME1 LINE L1 -5 6161 5642 5186 124 50 25 chr12 16003224 16003493 -128278996 - Tigger3b DNA MER2_type -1813 1215 954 2002 123 0 40 chr12 16003493 16003793 -128278696 + AluSx SINE Alu 1 288 -24 5186 124 50 25 chr12 16003793 16004442 -128278047 - Tigger3b DNA MER2_type -2074 954 274 440 213 9 65 chr12 16004440 16004548 -128277941 - Tigger3b DNA MER2_type -1129 102 1 * 404 200 12 12 chr12 16004548 16004623 -128277866 + MER44D DNA MER2_type 526 600 -9 791 306 65 40 chr12 16004658 16005279 -128277210 + HERVL LTR ERVL 2158 4687 -1077 1046 186 83 21 chr12 16005381 16005671 -128276818 + MER69 DNA AcHobo 2194 2501 -25 5513 183 44 11 chr12 16006804 16008277 -128274212 + L1MA3 LINE L1 15 2200 -5365 1316 222 149 16 chr12 16008284 16008654 -128273835 + MSTB LTR MaLR 9 426 0 15041 166 44 15 chr12 16008654 16011347 -128271142 + L1MA3 LINE L1 2195 4809 -2915 1618 178 67 28 chr12 16011347 16011706 -128270783 - THE1C LTR MaLR 0 375 3 9624 119 43 21 chr12 16011708 16013255 -128269234 - THE1C-int LTR MaLR 0 1580 1 1713 154 70 22 chr12 16013255 16013613 -128268876 - THE1C LTR MaLR 0 375 1 15041 166 44 15 chr12 16013613 16015375 -128267114 + L1MA3 LINE L1 4809 6846 -878 1120 60 13 0 chr12 16015375 16015524 -128266965 + L1PA4 LINE L1 6002 6152 -3 15041 166 44 15 chr12 16015524 16016430 -128266059 + L1MA3 LINE L1 6846 7724 0 1823 36 3 2 chr12 16016595 16016819 -128265670 + L1PA5 LINE L1 5764 5991 -163 19791 176 18 18 chr12 16016820 16020552 -128261937 - L1 LINE L1 -3816 3749 17 1901 164 14 8 chr12 16020636 16020989 -128261500 - L1MA6 LINE L1 -5 6295 5941 227 67 0 0 chr12 16020995 16021025 -128261464 + L1M4 LINE L1 5844 5873 -311 2023 188 59 5 chr12 16021082 16021486 -128261003 + MSTB LTR MaLR 1 426 0 911 252 33 4 chr12 16023235 16023477 -128259012 + L2 LINE L2 2135 2383 -931 664 202 0 17 chr12 16023509 16023628 -128258861 - FRAM SINE Alu -24 152 36 196 276 66 13 chr12 16023637 16023713 -128258776 + L2 LINE L2 2404 2483 -831 680 115 36 14 chr12 16023713 16023852 -128258637 + CT-rich Low_complexity Low_complexity 3 144 0 5740 221 37 2 chr12 16023853 16025258 -128257231 - L1 LINE L1 -2452 5113 3660 * 7189 202 36 10 chr12 16025253 16026686 -128255803 - L1 LINE L1 -6082 1483 13 1267 261 37 8 chr12 16026755 16027130 -128255359 - L1ME1 LINE L1 -25 6141 5756 699 327 100 66 chr12 16027641 16027814 -128254675 - L2 LINE L2 -331 2982 2816 2079 132 10 0 chr12 16027814 16028118 -128254371 - AluSq SINE Alu -6 307 1 699 327 100 66 chr12 16028118 16029170 -128253319 - L2 LINE L2 -497 2816 1715 357 24 0 0 chr12 16032423 16032465 -128250024 + (TA)n Simple_repeat Simple_repeat 2 43 0 441 254 23 11 chr12 16033208 16033385 -128249104 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 2385 137 48 17 chr12 16033885 16034300 -128248189 - Tigger2a DNA MER2_type -2 432 5 28 79 0 0 chr12 16036461 16036524 -128245965 + AT_rich Low_complexity Low_complexity 1 63 0 214 288 61 0 chr12 16037199 16037265 -128245224 - MIR SINE MIR -13 249 180 447 63 0 0 chr12 16039472 16039535 -128242954 + (TG)n Simple_repeat Simple_repeat 2 64 0 333 172 0 0 chr12 16040912 16040976 -128241513 + (TG)n Simple_repeat Simple_repeat 2 65 0 204 262 66 16 chr12 16041754 16041815 -128240674 + MIR SINE MIR 26 89 -119 421 227 8 34 chr12 16042038 16042157 -128240332 + L2 LINE L2 1894 2009 -1305 283 329 0 46 chr12 16042255 16042407 -128240082 + L2 LINE L2 3168 3312 -1 514 351 50 29 chr12 16042584 16042863 -128239626 + L1MCc LINE L1 315 599 -5824 28 61 0 0 chr12 16042961 16043010 -128239479 + AT_rich Low_complexity Low_complexity 1 49 0 627 262 81 61 chr12 16043177 16043722 -128238767 + L1MCc LINE L1 1517 2072 -4869 2421 259 58 40 chr12 16043796 16044950 -128237539 + L1MCc LINE L1 2307 3451 -3490 2238 121 0 6 chr12 16044950 16045264 -128237225 + AluSx SINE Alu 1 312 0 2421 259 58 40 chr12 16045264 16045846 -128236643 + L1MCc LINE L1 3451 4021 -2920 6187 183 45 2 chr12 16045862 16047138 -128235351 + L1MCc LINE L1 4304 5635 -1306 1118 244 61 46 chr12 16047153 16047498 -128234991 + MLT1A1 LTR MaLR 16 365 0 397 247 11 0 chr12 16047498 16047587 -128234902 + L1MCc LINE L1 5639 5728 -1213 659 287 148 37 chr12 16047594 16048652 -128233837 + L1ME3A LINE L1 4178 5117 -1053 2174 202 33 2 chr12 16048652 16049102 -128233387 + MLT1C LTR MaLR 1 464 -3 659 287 148 37 chr12 16049102 16049496 -128232993 + L1ME3A LINE L1 5117 5466 -704 876 177 32 170 chr12 16049496 16049773 -128232716 - MER8 DNA MER2_type 0 239 1 659 287 148 37 chr12 16049773 16049845 -128232644 + L1ME3A LINE L1 5466 5873 -297 1892 133 136 24 chr12 16051072 16051455 -128231034 - MSTA LTR MaLR -2 426 1 1861 121 26 11 chr12 16051665 16051937 -128230552 - AluSx SINE Alu -34 278 3 198 313 187 20 chr12 16051956 16052106 -128230383 + MIR SINE MIR 88 262 0 182 333 189 18 chr12 16052302 16052413 -128230076 + MIR3 SINE MIR 47 176 -32 1679 110 38 19 chr12 16052857 16053121 -128229368 - AluSx SINE Alu -15 297 29 21 0 0 0 chr12 16053692 16053713 -128228776 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr12 16054764 16054803 -128227686 + AT_rich Low_complexity Low_complexity 1 39 0 184 100 50 33 chr12 16054822 16054882 -128227607 + (TAA)n Simple_repeat Simple_repeat 2 62 0 1139 243 35 49 chr12 16055069 16055434 -128227055 + MLT1D LTR MaLR 34 393 -112 1368 120 14 10 chr12 16055434 16055800 -128226689 - MSTA LTR MaLR 0 428 1 547 220 0 8 chr12 16055800 16055918 -128226571 + MLT1D LTR MaLR 389 505 0 229 208 0 0 chr12 16056257 16056310 -128226179 + LTR66 LTR ERVL 394 446 -164 200 351 14 0 chr12 16056310 16056384 -128226105 + (CATATA)n Simple_repeat Simple_repeat 6 80 0 248 233 137 0 chr12 16056827 16056900 -128225589 + MIR SINE MIR 16 98 -164 240 143 0 0 chr12 16057035 16057077 -128225412 + (GGAGA)n Simple_repeat Simple_repeat 1 42 0 206 200 25 0 chr12 16057078 16057118 -128225371 + MER5C DNA MER1_type 284 324 0 24 53 0 0 chr12 16058041 16058079 -128224410 + AT_rich Low_complexity Low_complexity 1 38 0 6114 206 40 15 chr12 16058098 16061397 -128221092 + L1MA4 LINE L1 3 3386 -2942 1575 168 7 7 chr12 16061398 16061690 -128220799 - AluSq SINE Alu -8 305 14 261 235 12 0 chr12 16061968 16062053 -128220436 - L1 LINE L1 -2951 3195 3110 2074 124 3 7 chr12 16062053 16062359 -128220130 - AluSq SINE Alu -8 305 1 9863 168 33 31 chr12 16062361 16064989 -128217500 + L1MA4 LINE L1 3385 6016 -466 1096 177 51 9 chr12 16064989 16065204 -128217285 + THE1C LTR MaLR 1 224 -151 233 253 0 72 chr12 16066843 16066926 -128215563 - L2 LINE L2 -359 2913 2837 2262 87 3 0 chr12 16066999 16067286 -128215203 + AluSq SINE Alu 11 298 -15 512 302 114 67 chr12 16068784 16069142 -128213347 - L2 LINE L2 -1 3271 2897 731 284 126 30 chr12 16069596 16070071 -128212418 + LTR33 LTR ERVL 1 521 0 534 287 60 31 chr12 16070536 16070761 -128211728 + MIR SINE MIR 15 252 -10 341 287 32 0 chr12 16071001 16071095 -128211394 + MER103 DNA DNA 66 162 -4 1622 133 8 16 chr12 16071112 16071361 -128211128 - AluSx SINE Alu -2 310 64 216 208 21 0 chr12 16072297 16072345 -128210144 + MIR SINE MIR 213 261 -1 * 791 275 45 38 chr12 16072340 16072653 -128209836 + L2 LINE L2 2999 3313 0 433 254 102 0 chr12 16076503 16076621 -128205868 + MER94 DNA DNA 2 131 -3 2345 252 60 9 chr12 16076719 16077404 -128205085 + L1MD2 LINE L1 5646 6357 -2 293 333 106 0 chr12 16079222 16079354 -128203135 - MIR SINE MIR -8 254 109 328 282 19 10 chr12 16081030 16081133 -128201356 + MIR SINE MIR 127 230 -32 246 281 0 0 chr12 16081574 16081631 -128200858 - L2 LINE L2 0 3272 3216 1648 196 3 3 chr12 16082558 16082849 -128199640 + AluJo SINE Alu 1 291 -21 2065 40 61 29 chr12 16082859 16083137 -128199352 - AluY SINE Alu -24 287 1 3666 65 23 0 chr12 16084440 16084913 -128197576 + L1PA7 LINE L1 5671 6154 0 472 354 23 40 chr12 16085919 16086280 -128196209 + L2 LINE L2 2704 3058 -214 319 294 83 0 chr12 16086684 16086793 -128195696 + L2 LINE L2 3155 3272 0 196 244 0 134 chr12 16087125 16087172 -128195317 - L2 LINE L2 -9 3304 3271 1442 233 93 92 chr12 16087172 16087629 -128194860 + MLT1E2 LTR MaLR 3 463 -163 2154 43 6 93 chr12 16087629 16087953 -128194536 + AluY SINE Alu 1 296 -15 1442 233 93 92 chr12 16087953 16088118 -128194371 + MLT1E2 LTR MaLR 463 626 0 196 244 0 134 chr12 16088118 16088152 -128194337 - L2 LINE L2 -42 3271 3234 266 317 102 61 chr12 16088663 16088909 -128193580 - MIR SINE MIR -1 261 6 438 346 107 7 chr12 16088952 16089241 -128193248 - L2 LINE L2 -782 2532 2215 522 268 132 26 chr12 16090654 16090926 -128191563 + MLT1K LTR MaLR 267 567 -21 2462 74 3 3 chr12 16091521 16091832 -128190657 + AluY SINE Alu 1 311 0 201 109 0 65 chr12 16092344 16092390 -128190099 + (CCCA)n Simple_repeat Simple_repeat 3 45 0 7820 128 20 24 chr12 16092393 16093696 -128188793 - HSMAR2 DNA Mariner -2 1300 3 247 361 65 0 chr12 16093866 16093974 -128188515 - MIR SINE MIR -49 213 99 181 269 0 90 chr12 16095834 16095901 -128186588 + MIR SINE MIR 84 144 -118 7564 25 5 1 chr12 16096655 16097551 -128184938 + L1PA3 LINE L1 5257 6155 0 294 358 88 20 chr12 16097726 16097874 -128184615 - MIR3 SINE MIR -34 174 17 369 272 75 101 chr12 16098348 16098565 -128183924 - L1 LINE L1 -1552 4594 4388 1578 139 92 31 chr12 16098565 16098723 -128183766 - AluSx SINE Alu 0 312 165 180 0 0 0 chr12 16098723 16098743 -128183746 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1578 139 92 31 chr12 16098743 16098878 -128183611 - AluSx SINE Alu -147 165 1 369 272 75 101 chr12 16098878 16099006 -128183483 - L1 LINE L1 -1758 4388 4258 489 333 128 41 chr12 16099013 16099379 -128183110 + L2 LINE L2 2825 3222 -91 186 43 0 0 chr12 16099748 16099771 -128182718 + (TC)n Simple_repeat Simple_repeat 2 24 0 210 171 0 0 chr12 16099771 16099806 -128182683 + (TA)n Simple_repeat Simple_repeat 1 35 0 198 263 0 0 chr12 16099972 16100029 -128182460 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 2315 105 0 10 chr12 16100198 16100511 -128181978 + AluSg SINE Alu 1 310 0 23 0 0 0 chr12 16101801 16101824 -128180665 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr12 16101993 16102028 -128180461 + AT_rich Low_complexity Low_complexity 1 35 0 712 315 17 40 chr12 16102450 16102748 -128179741 + L3 LINE CR1 716 1006 -571 1326 277 92 66 chr12 16106562 16107496 -128174993 + L2 LINE L2 2229 3198 -115 182 33 67 0 chr12 16107496 16107526 -128174963 + (ATTG)n Simple_repeat Simple_repeat 1 32 0 1326 277 92 66 chr12 16107526 16107642 -128174847 + L2 LINE L2 3198 3310 -3 2115 121 0 0 chr12 16108815 16109105 -128173384 + AluSx SINE Alu 1 290 -22 327 229 67 0 chr12 16109750 16109855 -128172634 + L1ME4a LINE L1 5573 5684 -437 294 261 80 0 chr12 16109892 16109980 -128172509 + L1ME4a LINE L1 5696 5790 -2018 240 200 0 0 chr12 16110147 16110197 -128172292 + L1ME4a LINE L1 6068 6117 -4 2235 99 3 3 chr12 16110283 16110577 -128171912 - AluSx SINE Alu -17 295 2 2245 144 13 13 chr12 16110716 16111091 -128171398 + THE1C LTR MaLR 1 375 0 198 229 0 0 chr12 16112683 16112731 -128169758 - L2 LINE L2 -3 3310 3263 5398 211 84 40 chr12 16113308 16114522 -128167967 + L1MB3 LINE L1 1 1160 -5799 2181 127 0 16 chr12 16114522 16114837 -128167652 + AluSg SINE Alu 1 310 0 5398 211 84 40 chr12 16114837 16115588 -128166901 + L1MB3 LINE L1 1160 2393 -4566 1944 187 17 14 chr12 16115593 16115951 -128166538 - MLT1A1 LTR MaLR -1 364 6 3774 220 17 58 chr12 16115972 16117812 -128164677 + L1MB3 LINE L1 2506 4513 -2444 1712 243 126 24 chr12 16117782 16118286 -128164203 + L1MB3 LINE L1 5987 6438 -556 * 1953 128 3 38 chr12 16118286 16118599 -128163890 + AluSx SINE Alu 3 304 -8 1712 243 126 24 chr12 16118599 16119014 -128163475 + L1MB3 LINE L1 6438 6994 0 252 302 85 31 chr12 16119114 16119243 -128163246 + MIR SINE MIR 49 184 -78 240 59 0 0 chr12 16121206 16121240 -128161249 + (TA)n Simple_repeat Simple_repeat 2 35 0 2890 169 26 35 chr12 16121876 16122481 -128160008 - L1MA7 LINE L1 -3 6288 5689 1896 154 10 3 chr12 16122520 16122826 -128159663 - MER4D LTR ERV1 0 903 596 2926 128 15 19 chr12 16122826 16123287 -128159202 - MER4D LTR ERV1 -413 459 1 377 127 7 7 chr12 16123287 16123359 -128159130 - L1MA7 LINE L1 -512 5668 5600 1416 234 29 35 chr12 16123383 16123759 -128158730 - MLT1A2 LTR MaLR 0 374 1 2251 108 3 3 chr12 16124579 16124886 -128157603 + AluSc SINE Alu 1 307 -2 212 0 36 0 chr12 16124902 16124930 -128157559 + (TAGA)n Simple_repeat Simple_repeat 1 29 0 521 312 108 25 chr12 16125133 16125495 -128156994 + L1MEd LINE L1 627 1018 -5101 186 43 0 0 chr12 16125498 16125521 -128156968 + (CATATA)n Simple_repeat Simple_repeat 2 24 0 385 162 14 0 chr12 16125586 16125660 -128156829 - MER116 DNA Mariner -4 76 2 208 332 252 7 chr12 16126494 16126768 -128155721 + L2 LINE L2 2932 3272 0 413 162 0 0 chr12 16128083 16128151 -128154338 + AluJ/FRAM SINE Alu 231 298 -14 2460 63 0 13 chr12 16128151 16128453 -128154036 - AluY SINE Alu -13 298 1 2226 116 69 17 chr12 16129310 16129656 -128152833 - THE1B LTR MaLR 0 364 1 1675 216 27 16 chr12 16129848 16130218 -128152271 - MLT1A2 LTR MaLR 0 374 1 1828 342 68 40 chr12 16130346 16131487 -128151002 - ERVL LTR ERVL -381 5383 4104 2133 147 0 0 chr12 16131487 16131799 -128150690 + AluSx SINE Alu 1 312 0 1828 342 68 40 chr12 16131799 16132537 -128149952 - ERVL LTR ERVL -1660 4104 3388 951 357 32 42 chr12 16132718 16132803 -128149686 - ERVL LTR ERVL -2913 2851 2767 2084 156 23 59 chr12 16132803 16133246 -128149243 - MSTC LTR MaLR 0 428 2 951 357 32 42 chr12 16133246 16133948 -128148541 - ERVL LTR ERVL -2997 2767 2072 405 374 55 24 chr12 16133993 16134415 -128148074 - L2 LINE L2 -1177 2137 1703 279 0 0 0 chr12 16134858 16134889 -128147600 + (CA)n Simple_repeat Simple_repeat 1 31 0 285 287 74 8 chr12 16136322 16136444 -128146045 - MIR SINE MIR -14 248 119 272 214 265 31 chr12 16136706 16136804 -128145685 - L2 LINE L2 -1 3312 3192 1502 112 0 0 chr12 16137837 16138034 -128144455 - AluSx SINE Alu -115 197 1 316 264 132 25 chr12 16138170 16138291 -128144198 - L2 LINE L2 -1 3312 3179 821 276 0 10 chr12 16138351 16138554 -128143935 + MIR SINE MIR 28 228 -34 568 96 0 12 chr12 16139406 16139489 -128143000 + Alu SINE Alu 220 301 -11 1581 84 5 5 chr12 16139502 16139704 -128142785 - AluSx SINE Alu -105 207 6 274 359 51 18 chr12 16139711 16139928 -128142561 + L2 LINE L2 2754 2977 -337 458 264 23 58 chr12 16140102 16140276 -128142213 - L2 LINE L2 0 3313 3146 289 260 16 94 chr12 16140344 16140471 -128142018 - MLT1I LTR MaLR -4 405 289 25 0 0 0 chr12 16141257 16141282 -128141207 + AT_rich Low_complexity Low_complexity 1 25 0 2248 117 0 0 chr12 16141527 16141826 -128140663 + AluSc SINE Alu 1 299 -10 313 308 49 42 chr12 16142517 16142660 -128139829 + L2 LINE L2 2760 2903 -411 2281 93 0 0 chr12 16142720 16143022 -128139467 + AluSx SINE Alu 1 302 -10 204 402 12 0 chr12 16143253 16143335 -128139154 + L2 LINE L2 3189 3271 -42 2366 67 27 0 chr12 16143335 16143632 -128138857 + AluY SINE Alu 1 305 -6 348 300 130 20 chr12 16143712 16143912 -128138577 - L1ME LINE L1 -636 5485 5264 1650 189 71 14 chr12 16144231 16144585 -128137904 - MLT1A2 LTR MaLR 0 374 1 32 43 0 0 chr12 16145428 16145474 -128137015 + AT_rich Low_complexity Low_complexity 1 46 0 201 273 0 45 chr12 16145483 16145549 -128136940 - MIR SINE MIR -98 110 48 2135 99 3 0 chr12 16147832 16148147 -128134342 - AluSx SINE Alu 0 316 1 182 263 0 0 chr12 16148248 16148286 -128134203 + MIR SINE MIR 109 146 -62 249 359 51 0 chr12 16148300 16148417 -128134072 + L2 LINE L2 3171 3293 -20 30 27 0 0 chr12 16148481 16148518 -128133971 + AT_rich Low_complexity Low_complexity 1 37 0 2397 156 14 35 chr12 16148942 16149377 -128133112 - MSTA LTR MaLR -2 426 1 2101 218 51 22 chr12 16149625 16150074 -128132415 + MLT2B1 LTR ERVL 1 462 -58 2185 119 3 0 chr12 16152202 16152512 -128129977 - AluSx SINE Alu -1 311 1 1838 138 0 24 chr12 16152515 16152804 -128129685 - AluJb SINE Alu -17 295 14 1887 166 0 0 chr12 16152952 16153236 -128129253 + AluSx SINE Alu 1 284 -28 186 43 0 0 chr12 16153239 16153262 -128129227 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 278 255 0 0 chr12 16153710 16153761 -128128728 - MER5A DNA MER1_type -130 59 9 25 0 0 0 chr12 16154047 16154072 -128128417 + AT_rich Low_complexity Low_complexity 1 25 0 2503 57 0 3 chr12 16154806 16155104 -128127385 - AluY SINE Alu -14 297 1 276 355 89 10 chr12 16155191 16155394 -128127095 + L3 LINE CR1 1188 1406 -171 281 228 309 0 chr12 16155440 16155576 -128126913 + L2 LINE L2 3126 3303 -10 2520 64 0 0 chr12 16155741 16156038 -128126451 - AluY SINE Alu -14 297 1 255 233 211 0 chr12 16156601 16156691 -128125798 - Tigger5 DNA MER2_type 0 2323 2215 * 344 164 0 0 chr12 16156683 16156738 -128125751 - Tigger5 DNA MER2_type -2268 55 1 520 224 161 12 chr12 16156914 16157075 -128125414 + MER5A DNA MER1_type 4 188 -1 207 310 28 14 chr12 16157345 16157416 -128125073 + MER5C DNA MER1_type 3 74 -250 224 170 85 0 chr12 16157768 16157815 -128124674 + L2 LINE L2 3221 3271 -1 2451 69 0 0 chr12 16159285 16159591 -128122898 + AluY SINE Alu 1 306 -5 198 310 56 0 chr12 16159996 16160067 -128122422 + MIR SINE MIR 162 236 -26 720 264 89 17 chr12 16160111 16160346 -128122143 + MIR SINE MIR 1 252 -10 461 219 60 49 chr12 16160389 16160572 -128121917 - L1MC5 LINE L1 -49 7912 7728 216 218 36 0 chr12 16160786 16160841 -128121648 + GA-rich Low_complexity Low_complexity 2 58 0 475 237 224 0 chr12 16161248 16161400 -128121089 + MIR SINE MIR 76 261 -1 221 362 38 0 chr12 16162005 16162110 -128120379 - MIR SINE MIR -63 145 37 345 346 38 6 chr12 16162575 16162734 -128119755 + MIR3 SINE MIR 42 205 -3 21 0 0 0 chr12 16163622 16163643 -128118846 + AT_rich Low_complexity Low_complexity 1 21 0 291 327 123 89 chr12 16163864 16164280 -128118209 - L2 LINE L2 0 3272 2843 621 242 110 41 chr12 16164661 16164880 -128117609 - MIR SINE MIR -21 241 8 1197 317 103 38 chr12 16164888 16165924 -128116565 - L1M4 LINE L1 -1002 5144 4041 245 190 17 0 chr12 16166188 16166246 -128116243 - MER53 DNA DNA -3 186 128 25 31 0 0 chr12 16166312 16166344 -128116145 + AT_rich Low_complexity Low_complexity 1 32 0 302 247 82 75 chr12 16166581 16166727 -128115762 - L1MEd LINE L1 -4952 1167 1021 243 262 73 37 chr12 16166807 16166998 -128115491 - L1M4 LINE L1 -1786 4360 4163 320 300 17 25 chr12 16167117 16167237 -128115252 - HAL1 LINE L1 -1381 1126 1008 297 176 59 0 chr12 16167923 16167991 -128114498 + L1MC4 LINE L1 7971 8042 0 1065 270 65 39 chr12 16168035 16168420 -128114069 - MLT1J LTR MaLR -8 503 109 733 344 104 61 chr12 16168570 16169747 -128112742 - L2 LINE L2 -2 3270 2050 1538 115 56 4 chr12 16170005 16170275 -128112214 + L1MA8 LINE L1 6002 6285 -6 5779 120 11 16 chr12 16171408 16172399 -128110090 - L1PA13 LINE L1 -1 6162 5168 252 100 0 0 chr12 16172399 16172439 -128110050 + (TTG)n Simple_repeat Simple_repeat 3 42 0 5779 120 11 16 chr12 16172439 16172590 -128109899 - L1PA13 LINE L1 -995 5168 5018 2208 100 0 29 chr12 16172590 16172901 -128109588 - AluY SINE Alu -9 302 1 5779 120 11 16 chr12 16172901 16173328 -128109161 - L1PA13 LINE L1 -1145 5018 4601 434 260 8 0 chr12 16174181 16174304 -128108185 + L1MB3 LINE L1 5668 5791 -330 204 231 0 0 chr12 16175336 16175375 -128107114 - MER5C DNA MER1_type -3 321 283 2618 36 0 0 chr12 16175411 16175746 -128106743 + L1P LINE L1 2855 3189 -2957 264 202 53 32 chr12 16175758 16175852 -128106637 - MER5C DNA MER1_type -126 198 103 11206 166 32 27 chr12 16175853 16178928 -128103561 + L1PA16 LINE L1 169 2920 -3929 12028 207 27 16 chr12 16179864 16180005 -128102484 + L1PA16 LINE L1 2900 3038 -3831 726 182 0 8 chr12 16180005 16180137 -128102352 + FLAM_C SINE Alu 3 133 0 12028 207 27 16 chr12 16180137 16183931 -128098558 + L1PA16 LINE L1 3038 6869 0 1071 223 64 11 chr12 16184007 16184294 -128098195 + MLT1A1 LTR MaLR 24 360 -5 203 315 0 0 chr12 16184307 16184361 -128098128 - MER5C DNA MER1_type -270 54 1 239 243 57 0 chr12 16184539 16184609 -128097880 + L1MB3 LINE L1 5906 5979 -204 * 274 223 27 45 chr12 16184596 16184708 -128097781 + L1ME4a LINE L1 5998 6107 -14 21 0 0 0 chr12 16185097 16185118 -128097371 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr12 16185919 16185959 -128096530 + AT_rich Low_complexity Low_complexity 1 40 0 48 0 0 0 chr12 16186179 16186227 -128096262 + AT_rich Low_complexity Low_complexity 1 48 0 189 0 0 0 chr12 16187764 16187785 -128094704 + (A)n Simple_repeat Simple_repeat 1 21 0 3478 196 52 19 chr12 16187900 16188408 -128094081 + L1MA9 LINE L1 5444 5990 -322 2734 120 14 9 chr12 16188408 16188840 -128093649 - MER57B LTR ERV1 0 434 1 3478 196 52 19 chr12 16188840 16189135 -128093354 + L1MA9 LINE L1 5990 6274 -38 923 143 13 0 chr12 16189138 16189292 -128093197 + L1MD3 LINE L1 7826 7981 -14 210 290 0 81 chr12 16189336 16189398 -128093091 + MIR3 SINE MIR 144 200 -8 1705 194 3 0 chr12 16189916 16190205 -128092284 + AluJb SINE Alu 1 290 -22 8387 177 34 8 chr12 16190224 16192170 -128090319 + L1PBa LINE L1 2607 4603 -2259 952 140 0 0 chr12 16192574 16192710 -128089779 - AluSq/x SINE Alu -172 141 6 186 43 0 0 chr12 16192743 16192766 -128089723 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 6045 208 44 75 chr12 16192999 16195311 -128087178 - L1MB1 LINE L1 0 5992 3946 1000 62 8 0 chr12 16195311 16195440 -128087049 + L1PA7 LINE L1 6023 6152 -2 6045 208 44 75 chr12 16195440 16196489 -128086000 - L1MB1 LINE L1 -2046 3946 2866 1336 179 24 72 chr12 16196490 16196828 -128085661 + MLT2B3 LTR ERVL 236 554 0 4279 248 68 35 chr12 16196857 16199128 -128083361 - L1MB1 LINE L1 -3945 2025 2 385 243 0 0 chr12 16199682 16199756 -128082733 + MER5A DNA MER1_type 26 99 -90 189 301 48 24 chr12 16199685 16199768 -128082721 - MER5A DNA MER1_type -16 173 89 * 22 0 0 0 chr12 16199902 16199924 -128082565 + AT_rich Low_complexity Low_complexity 1 22 0 303 352 28 28 chr12 16200130 16200312 -128082177 + MIR3 SINE MIR 20 201 -7 2610 153 26 12 chr12 16200340 16200932 -128081557 + MER4E LTR ERV1 1 766 0 186 328 97 46 chr12 16200933 16200991 -128081498 + L2 LINE L2 2553 2607 -707 2354 89 7 0 chr12 16200991 16201294 -128081195 - AluSc SINE Alu -4 305 1 186 328 97 46 chr12 16201294 16201430 -128081059 + L2 LINE L2 2607 2757 -557 2066 123 3 7 chr12 16201559 16201851 -128080638 - AluSq SINE Alu -19 294 4 206 355 56 0 chr12 16202105 16202212 -128080277 + MIR SINE MIR 148 260 -2 197 336 52 43 chr12 16202705 16202821 -128079668 - L3 LINE CR1 -50 1527 1411 2053 102 22 41 chr12 16203771 16204086 -128078403 - AluSx SINE Alu -3 309 1 33 43 0 0 chr12 16204323 16204370 -128078119 + AT_rich Low_complexity Low_complexity 1 47 0 372 297 76 0 chr12 16205386 16205531 -128076958 - MIR SINE MIR -13 249 94 357 309 36 29 chr12 16206011 16206150 -128076339 - MIR SINE MIR -17 245 106 557 292 91 18 chr12 16206354 16206573 -128075916 + MIR SINE MIR 17 251 -11 541 261 83 22 chr12 16206601 16206781 -128075708 + L2 LINE L2 2185 2375 -939 234 62 0 0 chr12 16206833 16206865 -128075624 + (TG)n Simple_repeat Simple_repeat 2 33 0 313 275 9 37 chr12 16207711 16207820 -128074669 + L2 LINE L2 2708 2813 -501 184 290 151 54 chr12 16209328 16209514 -128072975 - MIR SINE MIR -56 206 3 358 287 99 39 chr12 16209663 16209844 -128072645 + MIR SINE MIR 21 212 -50 2931 6 0 0 chr12 16209916 16210234 -128072255 - AluYb8 SINE Alu 0 318 1 1372 163 0 5 chr12 16210882 16211103 -128071386 + AluJb SINE Alu 39 258 -54 219 225 0 0 chr12 16211348 16211388 -128071101 + (CAT)n Simple_repeat Simple_repeat 3 42 0 212 330 56 42 chr12 16211957 16212172 -128070317 + L2 LINE L2 2570 2787 -527 2172 101 0 10 chr12 16213242 16213538 -128068951 + AluSx SINE Alu 12 304 -8 390 320 34 29 chr12 16213632 16213807 -128068682 - MIR SINE MIR -72 190 15 325 266 169 0 chr12 16213795 16213919 -128068570 + MIR SINE MIR 86 230 -32 * 263 326 171 8 chr12 16214196 16214325 -128068164 + MIR3 SINE MIR 10 159 -49 2652 47 0 3 chr12 16216106 16216450 -128066039 - L1PA2 LINE L1 -787 5359 5017 7053 15 0 1 chr12 16216450 16217259 -128065230 + L1PA2 LINE L1 5344 6151 -4 27 0 0 26 chr12 16218409 16218423 -128064066 + AT_rich Low_complexity Low_complexity 1 14 -23 2470 58 0 0 chr12 16218423 16218718 -128063771 - AluY SINE Alu -16 295 1 27 0 0 26 chr12 16218718 16218741 -128063748 + AT_rich Low_complexity Low_complexity 14 37 0 1644 248 118 71 chr12 16219867 16220469 -128062020 - L1ME LINE L1 -5199 871 218 462 65 0 0 chr12 16220469 16220531 -128061958 + (TGGA)n Simple_repeat Simple_repeat 3 64 0 1644 248 118 71 chr12 16220531 16220755 -128061734 - L1ME LINE L1 -5852 218 6 265 304 49 20 chr12 16221311 16221413 -128061076 - L2 LINE L2 -27 3286 3182 3968 135 39 43 chr12 16221638 16222409 -128060080 + L1MA5 LINE L1 5531 6298 -2 621 225 7 40 chr12 16222618 16222769 -128059720 + MIR SINE MIR 81 226 -36 194 296 19 0 chr12 16222808 16222862 -128059627 - MIR SINE MIR -61 147 93 2290 243 67 12 chr12 16225523 16226256 -128056233 - L1MCc LINE L1 -3212 3729 2957 616 156 69 31 chr12 16226259 16226419 -128056070 - MER3 DNA MER1_type 0 2585 2420 397 231 0 0 chr12 16226467 16226545 -128055944 - MER3 DNA MER1_type -91 118 41 37 39 0 0 chr12 16226546 16226597 -128055892 + AT_rich Low_complexity Low_complexity 1 51 0 353 271 85 34 chr12 16226624 16226742 -128055747 - L1MCc LINE L1 -5190 1233 1110 1270 281 116 63 chr12 16226748 16227462 -128055027 - L1MCc LINE L1 -5345 1078 327 364 172 25 42 chr12 16227462 16227618 -128054871 + MER3 DNA MER1_type 1 208 -1 1064 208 48 24 chr12 16227634 16227927 -128054562 - L1MCc LINE L1 -6105 318 19 250 284 9 64 chr12 16228084 16228193 -128054296 + MIR3 SINE MIR 85 187 -21 186 298 122 38 chr12 16228814 16228945 -128053544 - L2 LINE L2 -18 3295 3154 3215 108 13 5 chr12 16228953 16229511 -128052978 - MER41B LTR ERV1 0 635 1 1474 211 37 12 chr12 16230021 16230348 -128052141 - MER58B DNA MER1_type -1 340 6 241 340 0 10 chr12 16230663 16230760 -128051729 - L2 LINE L2 -657 2657 2562 297 0 0 0 chr12 16231675 16231708 -128050781 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 562 205 0 39 chr12 16232183 16232310 -128050179 + FLAM_A SINE Alu 18 139 -3 45 34 0 0 chr12 16232327 16232386 -128050103 + AT_rich Low_complexity Low_complexity 1 59 0 364 278 32 94 chr12 16232592 16233131 -128049358 + L1MEc LINE L1 1233 1687 -839 498 276 78 6 chr12 16233191 16233447 -128049042 + L1ME LINE L1 5283 5556 -606 190 225 0 0 chr12 16235118 16235158 -128047331 + L2 LINE L2 3269 3308 -5 1325 206 63 69 chr12 16235304 16235808 -128046681 - LTR24B LTR ERV1 -6 570 70 2079 104 21 0 chr12 16235873 16236161 -128046328 - AluSp SINE Alu 0 313 20 2055 104 0 11 chr12 16238011 16238298 -128044191 + AluSx SINE Alu 1 284 -28 234 0 0 0 chr12 16238298 16238324 -128044165 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 26 0 0 0 chr12 16238520 16238546 -128043943 + AT_rich Low_complexity Low_complexity 1 26 0 627 94 0 0 chr12 16239779 16239875 -128042614 + (TGGA)n Simple_repeat Simple_repeat 2 97 0 209 277 18 98 chr12 16239942 16240054 -128042435 + L3 LINE CR1 1472 1574 -3 2235 109 0 7 chr12 16240378 16240681 -128041808 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr12 16243138 16243159 -128039330 + AT_rich Low_complexity Low_complexity 1 21 0 282 240 10 52 chr12 16245668 16245764 -128036725 - MIR SINE MIR -85 177 86 255 191 0 0 chr12 16245981 16246028 -128036461 - MIR SINE MIR -59 203 157 520 256 95 42 chr12 16246042 16246154 -128036335 + MIR3 SINE MIR 23 148 -60 1946 143 55 27 chr12 16246154 16246519 -128035970 - THE1C LTR MaLR 0 375 1 520 256 95 42 chr12 16246519 16246574 -128035915 + MIR3 SINE MIR 148 199 -9 339 320 13 11 chr12 16246577 16246709 -128035780 - MIR SINE MIR -65 143 15 490 234 234 7 chr12 16246726 16246867 -128035622 + MIR SINE MIR 16 188 -74 2056 114 11 0 chr12 16246869 16247191 -128035298 + AluSx SINE Alu 1 325 0 278 154 0 77 chr12 16247625 16247690 -128034799 - MIR SINE MIR 0 262 203 361 348 141 0 chr12 16248728 16248863 -128033626 - L2 LINE L2 0 3272 3119 2368 77 34 0 chr12 16249153 16249450 -128033039 + AluSx SINE Alu 1 307 -5 188 255 20 0 chr12 16250559 16250610 -128031879 - MIR3 SINE MIR -18 190 139 967 148 0 0 chr12 16250626 16250761 -128031728 + FLAM_C SINE Alu 4 138 -5 2109 98 0 24 chr12 16251291 16251602 -128030887 - AluSc SINE Alu 0 304 1 2177 121 0 22 chr12 16251838 16252153 -128030336 - AluSx SINE Alu -4 308 1 25 0 0 0 chr12 16252362 16252387 -128030102 + AT_rich Low_complexity Low_complexity 1 25 0 1893 169 0 25 chr12 16252450 16252770 -128029719 + AluSx SINE Alu 1 312 0 1251 51 17 6 chr12 16252780 16252802 -128029687 + (GAAA)n Simple_repeat Simple_repeat 1 200 0 1251 51 17 6 chr12 16252802 16252978 -128029511 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 383 303 38 43 chr12 16253545 16253730 -128028759 - MIR SINE MIR -78 184 1 2317 109 0 3 chr12 16253907 16254219 -128028270 + AluSx SINE Alu 1 311 -1 182 261 22 0 chr12 16254295 16254319 -128028170 + L2 LINE L2 3191 3215 -57 384 297 148 0 chr12 16254319 16254474 -128028015 + MIR3 SINE MIR 2 179 -29 235 0 28 28 chr12 16254474 16254510 -128027979 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1989 122 7 10 chr12 16254513 16254801 -128027688 - AluSx SINE Alu -23 289 3 590 226 17 90 chr12 16255609 16255717 -128026772 + FRAM SINE Alu 1 4294967240 -400 2303 110 10 0 chr12 16255717 16256025 -128026464 - AluY SINE Alu 0 311 1 590 226 17 90 chr12 16256025 16256273 -128026216 + FRAM SINE Alu -57 208 0 456 165 26 9 chr12 16256278 16256393 -128026096 + GA-rich Low_complexity Low_complexity 2 118 0 2113 138 48 20 chr12 16256811 16257165 -128025324 - THE1B LTR MaLR 0 364 1 11258 87 17 21 chr12 16257165 16258752 -128023737 - THE1B-int LTR MaLR 0 1580 1 2204 122 48 17 chr12 16258752 16259105 -128023384 - THE1B LTR MaLR 0 364 1 21 36 0 0 chr12 16259733 16259761 -128022728 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr12 16259837 16259866 -128022623 + AT_rich Low_complexity Low_complexity 1 29 0 292 306 96 41 chr12 16260483 16260702 -128021787 + MIR SINE MIR 18 248 -14 189 269 64 26 chr12 16261317 16261395 -128021094 + MIR SINE MIR 60 140 -122 392 265 41 27 chr12 16261472 16261619 -128020870 - MER110 LTR ERV1 -87 404 256 220 211 0 0 chr12 16261805 16261857 -128020632 + MIR SINE MIR 117 168 -94 1537 40 25 5 chr12 16261987 16262186 -128020303 - L1PA8 LINE L1 0 6172 5970 23 0 0 0 chr12 16263200 16263223 -128019266 + AT_rich Low_complexity Low_complexity 1 23 0 1833 188 0 0 chr12 16263231 16263539 -128018950 + AluJo SINE Alu 1 308 -4 1657 154 15 7 chr12 16263543 16263816 -128018673 - AluJo SINE Alu -19 293 19 22 0 0 0 chr12 16263823 16263845 -128018644 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr12 16263896 16263916 -128018573 + (A)n Simple_repeat Simple_repeat 1 20 0 276 237 17 0 chr12 16263946 16264005 -128018484 - L2 LINE L2 -4 3268 3209 325 292 25 50 chr12 16264767 16264887 -128017602 - L2 LINE L2 -7 3306 3190 387 284 120 67 chr12 16265138 16265480 -128017009 - MLT1J LTR MaLR -43 468 109 186 222 22 0 chr12 16266246 16266291 -128016198 - MIR3 SINE MIR -9 199 154 499 232 73 16 chr12 16266292 16266538 -128015951 - MER20B DNA MER1_type 0 783 524 6531 195 56 22 chr12 16266804 16267973 -128014516 + L1M3f LINE L1 17 1146 -5182 2224 77 10 33 chr12 16267973 16268273 -128014216 + AluY SINE Alu 1 293 -18 6531 195 56 22 chr12 16268273 16269110 -128013379 + L1M3f LINE L1 1146 1954 -4374 1366 161 79 69 chr12 16269110 16269414 -128013075 + AluJo SINE Alu 1 307 -5 6531 195 56 22 chr12 16269414 16271099 -128011390 + L1M3f LINE L1 1954 3824 -2504 31 26 0 0 chr12 16271969 16272007 -128010482 + AT_rich Low_complexity Low_complexity 1 38 0 489 288 44 34 chr12 16272137 16272342 -128010147 - MER20B DNA MER1_type -573 210 4 245 356 62 25 chr12 16272451 16272611 -128009878 - L3 LINE CR1 -203 1374 1209 191 231 39 19 chr12 16273214 16273266 -128009223 + L2 LINE L2 3257 3309 -4 209 194 0 0 chr12 16274023 16274059 -128008430 + A-rich Low_complexity Low_complexity 3 38 0 209 307 14 100 chr12 16274116 16274256 -128008233 - L2 LINE L2 -4 3309 3182 1197 293 108 72 chr12 16274330 16275160 -128007329 - L2 LINE L2 -407 2907 2048 216 0 0 0 chr12 16275160 16275184 -128007305 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 257 333 81 0 chr12 16275260 16275347 -128007142 - MIR3 SINE MIR -8 200 107 1358 265 83 27 chr12 16275800 16276438 -128006051 - L2 LINE L2 0 3313 2627 225 167 0 100 chr12 16276537 16276597 -128005892 - MER94 DNA DNA -80 54 1 2247 303 131 23 chr12 16276620 16277702 -128004787 - L2 LINE L2 -703 2611 1413 2193 84 28 0 chr12 16277975 16278261 -128004228 - AluSg SINE Alu -16 294 1 471 340 38 0 chr12 16278546 16278705 -128003784 + MIR3 SINE MIR 31 195 -13 761 238 0 0 chr12 16278883 16279051 -128003438 + L1PB4 LINE L1 5982 6149 -7 2290 118 0 3 chr12 16279217 16279530 -128002959 + AluSx SINE Alu 1 312 0 21 0 0 0 chr12 16279583 16279604 -128002885 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 16280026 16280047 -128002442 + AT_rich Low_complexity Low_complexity 1 21 0 1850 166 47 36 chr12 16281164 16281470 -128001019 - MLT1B LTR MaLR 0 390 78 2151 117 3 0 chr12 16281470 16281760 -128000729 + AluSx SINE Alu 3 293 -19 1850 166 47 36 chr12 16281760 16281839 -128000650 - MLT1B LTR MaLR -312 78 1 1220 119 92 37 chr12 16281970 16282188 -128000301 + MER30 DNA MER1_type 1 230 0 1523 161 29 6 chr12 16282317 16282628 -127999861 - MER33 DNA MER1_type 0 324 7 2325 77 0 39 chr12 16283954 16284266 -127998223 + AluSc SINE Alu 1 300 -9 1727 147 68 4 chr12 16285490 16285769 -127996720 + AluJb SINE Alu 1 297 -15 21 0 0 0 chr12 16286270 16286291 -127996198 + AT_rich Low_complexity Low_complexity 1 21 0 464 266 73 49 chr12 16287871 16288157 -127994332 + L1MC4a LINE L1 5337 5629 -2179 208 295 16 0 chr12 16288180 16288241 -127994248 + (TA)n Simple_repeat Simple_repeat 2 63 0 354 183 0 0 chr12 16288241 16288312 -127994177 + (TG)n Simple_repeat Simple_repeat 2 72 0 589 290 21 21 chr12 16288318 16288564 -127993925 + L1MC4a LINE L1 5681 5826 -352 22 0 0 0 chr12 16288767 16288789 -127993700 + AT_rich Low_complexity Low_complexity 1 22 0 414 285 81 12 chr12 16289058 16289230 -127993259 + MIR SINE MIR 31 214 -48 184 115 0 58 chr12 16289642 16289694 -127992795 + (TTTTTG)n Simple_repeat Simple_repeat 2 50 0 2511 144 14 23 chr12 16289777 16290215 -127992274 - Tigger2a DNA MER2_type 0 434 1 304 261 86 39 chr12 16290265 16290408 -127992081 - MIR3 SINE MIR -68 140 4 2298 125 0 0 chr12 16292534 16292838 -127989651 - AluSx SINE Alu -8 304 1 2053 271 74 28 chr12 16292927 16293673 -127988816 - L2 LINE L2 -67 3246 2456 1939 91 76 0 chr12 16293673 16293936 -127988553 + AluSp SINE Alu 23 305 -8 2053 271 74 28 chr12 16293936 16294056 -127988433 - L2 LINE L2 -857 2456 2343 304 105 0 35 chr12 16294056 16294113 -127988376 - MLT2A1 LTR ERVL 0 453 399 214 149 21 21 chr12 16294121 16294168 -127988321 + (TA)n Simple_repeat Simple_repeat 2 48 0 2795 68 25 8 chr12 16294187 16294584 -127987905 - MLT2A1 LTR ERVL -40 404 1 872 254 88 58 chr12 16294584 16294704 -127987785 - L2 LINE L2 -967 2347 2232 2141 90 21 14 chr12 16294704 16294992 -127987497 + AluSq SINE Alu 7 296 -17 872 254 88 58 chr12 16294992 16295233 -127987256 - L2 LINE L2 -1082 2232 1975 1013 228 135 20 chr12 16295456 16295908 -127986581 - Charlie4a DNA MER1_type -4 504 1 23 0 0 0 chr12 16296556 16296579 -127985910 + AT_rich Low_complexity Low_complexity 1 23 0 2274 96 36 0 chr12 16296767 16297068 -127985421 - AluSx SINE Alu 0 312 1 23 0 0 0 chr12 16297637 16297660 -127984829 + AT_rich Low_complexity Low_complexity 1 23 0 1824 150 13 19 chr12 16297660 16297967 -127984522 - AluJb SINE Alu -2 310 6 25 31 0 0 chr12 16299372 16299404 -127983085 + AT_rich Low_complexity Low_complexity 1 32 0 317 305 150 20 chr12 16300453 16300653 -127981836 - MIR SINE MIR -16 246 21 190 344 0 0 chr12 16300923 16300984 -127981505 + L3b LINE CR1 1108 1168 -415 243 205 102 102 chr12 16301055 16301182 -127981307 + L3b LINE CR1 1286 1412 -171 210 223 0 117 chr12 16304146 16304240 -127978249 - L2 LINE L2 -1 3271 3189 26 0 0 0 chr12 16304364 16304390 -127978099 + AT_rich Low_complexity Low_complexity 1 26 0 187 54 54 0 chr12 16306237 16306274 -127976215 + T-rich Low_complexity Low_complexity 2 40 0 2118 128 0 0 chr12 16306277 16306559 -127975930 - AluSx SINE Alu -30 282 1 327 306 11 38 chr12 16307099 16307282 -127975207 + CT-rich Low_complexity Low_complexity 3 180 0 343 346 60 16 chr12 16307491 16307676 -127974813 + MIR SINE MIR 13 205 -57 2116 125 0 0 chr12 16307886 16308202 -127974287 + AluSx SINE Alu 1 316 0 226 336 121 0 chr12 16308687 16308811 -127973678 - MIR SINE MIR -57 151 36 277 191 0 44 chr12 16310710 16310778 -127971711 - MLT1K LTR MaLR -13 575 511 2061 114 7 0 chr12 16311020 16311324 -127971165 - AluSg SINE Alu 0 306 1 228 214 0 0 chr12 16312480 16312522 -127969967 + MIR3 SINE MIR 119 160 -48 499 273 22 49 chr12 16312522 16312705 -127969784 + MER20B DNA MER1_type 1 178 -605 2057 166 16 51 chr12 16312777 16313206 -127969283 - MLT2D LTR ERVL 0 414 1 247 203 0 47 chr12 16314413 16314477 -127968012 + MLT1K LTR MaLR 511 571 -17 743 198 249 20 chr12 16314679 16314820 -127967669 + MLT1A2 LTR MaLR 2 109 -256 1902 130 61 21 chr12 16314820 16315150 -127967339 - MER61A LTR ERV1 0 343 1 743 198 249 20 chr12 16315150 16315301 -127967188 + MLT1A2 LTR MaLR 109 361 -4 790 222 68 17 chr12 16315392 16315777 -127966712 - MLT1C LTR MaLR -1 466 1 238 329 43 43 chr12 16316448 16316588 -127965901 - MIR SINE MIR -65 197 58 301 243 54 27 chr12 16317521 16317595 -127964894 - MER91C DNA MER1_type -21 119 44 2211 133 3 13 chr12 16320649 16321033 -127961456 - MER65C LTR ERV1 -2 459 80 1153 56 0 7 chr12 16321033 16321176 -127961313 - AluSg/x SINE Alu -6 306 165 394 236 34 0 chr12 16321176 16321265 -127961224 - MER65C LTR ERV1 -369 92 1 3240 106 47 4 chr12 16321585 16322075 -127960414 - MER9 LTR ERVK 0 511 1 185 95 0 48 chr12 16322442 16322484 -127960005 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1317 194 56 22 chr12 16322840 16322940 -127959549 + MER58B DNA MER1_type 10 105 -2315 1641 211 10 0 chr12 16322940 16323218 -127959271 + AluSp SINE Alu 3 286 -27 180 0 0 0 chr12 16323218 16323238 -127959251 + (CA)n Simple_repeat Simple_repeat 1 20 0 1641 211 10 0 chr12 16323238 16323258 -127959231 + AluSp SINE Alu 286 304 -9 1317 194 56 22 chr12 16323258 16323477 -127959012 + MER58B DNA MER1_type 105 340 -1 190 319 31 105 chr12 16323737 16323928 -127958561 + L2 LINE L2 3009 3185 -87 269 221 93 0 chr12 16325800 16325886 -127956603 - MIR SINE MIR -59 203 110 869 271 86 46 chr12 16325886 16326318 -127956171 - LTR16A1 LTR ERVL -8 449 1 224 292 46 0 chr12 16326322 16326387 -127956102 - MIR SINE MIR -155 107 40 475 309 48 24 chr12 16326973 16327141 -127955348 - MIR SINE MIR -90 172 1 2217 117 0 19 chr12 16328832 16329149 -127953340 + AluSx SINE Alu 1 311 -1 2248 103 0 7 chr12 16330825 16331126 -127951363 + AluSx SINE Alu 1 299 -13 1719 72 0 0 chr12 16331403 16331610 -127950879 + AluSc SINE Alu 83 289 -20 43 20 0 0 chr12 16331614 16331664 -127950825 + AT_rich Low_complexity Low_complexity 1 50 0 210 253 172 10 chr12 16332365 16332464 -127950025 + MIR SINE MIR 38 152 -110 327 301 73 70 chr12 16333119 16333461 -127949028 - L1ME4a LINE L1 -63 6058 5716 713 72 0 0 chr12 16334147 16334244 -127948245 + L1MA9 LINE L1 6063 6159 -153 330 153 0 0 chr12 16334255 16334314 -127948175 + (TA)n Simple_repeat Simple_repeat 1 59 0 748 112 60 22 chr12 16334314 16334448 -127948041 + L1MA9 LINE L1 6174 6312 0 2221 102 0 29 chr12 16338394 16338707 -127943782 - AluSx SINE Alu -8 304 1 258 341 18 43 chr12 16339569 16339733 -127942756 + L3 LINE CR1 1066 1225 -352 180 318 0 16 chr12 16339792 16339855 -127942634 - L2 LINE L2 0 3272 3211 208 292 35 80 chr12 16340532 16340645 -127941844 - MIR SINE MIR -115 147 40 251 345 106 0 chr12 16340819 16340932 -127941557 - L2 LINE L2 -18 3295 3171 511 299 96 0 chr12 16341530 16341697 -127940792 + MLT1J2 LTR MaLR 266 448 -2 1872 162 82 12 chr12 16342583 16342923 -127939566 - MLT1A1 LTR MaLR -1 364 1 377 246 136 0 chr12 16343572 16343682 -127938807 + MIR SINE MIR 102 226 -36 294 314 159 23 chr12 16343694 16343914 -127938575 + MIR SINE MIR 1 250 -12 2077 102 7 36 chr12 16344164 16344468 -127938021 + AluSx SINE Alu 1 295 -17 456 74 0 0 chr12 16344870 16344924 -127937565 - Alu SINE Alu -29 283 230 263 291 116 0 chr12 16345654 16345740 -127936749 + MIR SINE MIR 49 144 -118 324 120 0 0 chr12 16345904 16345954 -127936535 + (TG)n Simple_repeat Simple_repeat 1 50 0 913 280 96 43 chr12 16348189 16349094 -127933395 + L1ME LINE L1 531 1466 -4614 3133 247 32 29 chr12 16349097 16349293 -127933196 + L1MEc LINE L1 38 232 -6164 776 143 118 0 chr12 16349293 16349412 -127933077 + FLAM_C SINE Alu 1 133 0 3133 247 32 29 chr12 16349412 16350109 -127932380 + L1MEc LINE L1 232 934 -5462 815 174 35 23 chr12 16350122 16350294 -127932195 - L1MB4 LINE L1 0 6180 6007 1566 253 65 17 chr12 16350295 16350754 -127931735 - L1M4 LINE L1 -883 5263 4783 * 7977 173 33 29 chr12 16350749 16351263 -127931226 - L1PA16 LINE L1 0 6166 5656 1769 96 100 4 chr12 16351263 16351513 -127930976 - AluSp SINE Alu -39 274 1 7977 173 33 29 chr12 16351513 16351846 -127930643 - L1PA16 LINE L1 -510 5656 5326 2383 103 3 0 chr12 16351846 16352158 -127930331 - AluSp SINE Alu 0 313 1 7977 173 33 29 chr12 16352158 16353908 -127928581 - L1PA16 LINE L1 -840 5326 3541 607 174 78 30 chr12 16454215 16454382 -127828107 + MER5B DNA MER1_type 2 176 -2 324 102 0 0 chr12 16455777 16455826 -127826663 + (CA)n Simple_repeat Simple_repeat 1 49 0 2015 107 0 0 chr12 16456114 16456376 -127826113 - AluSc SINE Alu -8 301 40 670 242 38 16 chr12 16456491 16456677 -127825812 - MER91B DNA MER1_type 0 190 1 224 119 0 24 chr12 16456797 16456839 -127825650 + (TA)n Simple_repeat Simple_repeat 1 41 0 188 337 23 0 chr12 16457253 16457339 -127825150 + MIR SINE MIR 54 141 -67 247 297 55 0 chr12 16458522 16458613 -127823876 - MLT1H LTR MaLR 0 549 454 342 283 17 8 chr12 16458665 16458785 -127823704 - LTR28 LTR ERV1 0 1020 900 1079 211 201 59 chr12 16458825 16459522 -127822967 - LTR1B LTR ERV1 -37 983 19 254 214 18 0 chr12 16459516 16459572 -127822917 - LTR28 LTR ERV1 -963 57 1 * 992 269 70 30 chr12 16459585 16459916 -127822573 - MLT1H LTR MaLR -198 351 8 458 287 111 55 chr12 16461259 16461663 -127820826 + MLT1H LTR MaLR 123 549 0 195 42 0 0 chr12 16461799 16461823 -127820666 + (CAATT)n Simple_repeat Simple_repeat 5 28 0 26 0 0 0 chr12 16462290 16462316 -127820173 + AT_rich Low_complexity Low_complexity 1 26 0 838 129 50 14 chr12 16463051 16463229 -127819260 - AluJb SINE Alu 0 350 168 22 80 0 0 chr12 16464760 16464810 -127817679 + AT_rich Low_complexity Low_complexity 1 50 0 183 42 0 0 chr12 16466442 16466466 -127816023 + (A)n Simple_repeat Simple_repeat 1 24 0 1335 266 104 34 chr12 16466801 16467130 -127815359 + HAL1 LINE L1 811 1116 -1391 192 77 0 0 chr12 16467130 16467156 -127815333 + (CA)n Simple_repeat Simple_repeat 2 27 0 1335 266 104 34 chr12 16467156 16467669 -127814820 + HAL1 LINE L1 1116 1712 -795 1495 141 19 48 chr12 16468000 16468269 -127814220 + MER1B DNA MER1_type 79 339 0 184 111 44 0 chr12 16468392 16468437 -127814052 + (TA)n Simple_repeat Simple_repeat 2 48 0 380 290 77 73 chr12 16468794 16469053 -127813436 + HAL1 LINE L1 2245 2504 -3 304 274 27 41 chr12 16469187 16469333 -127813156 + MIR SINE MIR 119 262 0 2393 199 20 61 chr12 16469514 16470169 -127812320 - L1ME1 LINE L1 -5 6161 5534 1489 195 27 7 chr12 16470746 16471038 -127811451 - AluJo SINE Alu -14 298 1 586 322 89 0 chr12 16471712 16471926 -127810563 - MIR SINE MIR -8 254 22 2014 168 37 0 chr12 16472137 16472489 -127810000 + MLT1A1 LTR MaLR 1 365 0 381 294 42 8 chr12 16475347 16475466 -127807023 - L2 LINE L2 -1 3271 3149 2396 197 4 17 chr12 16475676 16476193 -127806296 + L1MB7 LINE L1 5540 6049 -135 2376 191 104 55 chr12 16476193 16476953 -127805536 - LTR1B LTR ERV1 0 826 30 575 155 8 39 chr12 16476972 16477101 -127805388 + L1MB7 LINE L1 6052 6176 -8 2333 91 0 3 chr12 16477270 16477567 -127804922 + AluSq SINE Alu 1 296 -17 492 244 360 0 chr12 16478066 16478238 -127804251 + MIR SINE MIR 19 252 -10 204 216 0 0 chr12 16478269 16478320 -127804169 + (TAG)n Simple_repeat Simple_repeat 1 51 0 1854 118 4 0 chr12 16478533 16478779 -127803710 + AluSx SINE Alu 2 248 -64 22 0 0 0 chr12 16478779 16478801 -127803688 + AT_rich Low_complexity Low_complexity 1 22 0 243 175 70 0 chr12 16479064 16479121 -127803368 + LTR58 LTR ERV1 359 419 -260 226 293 64 42 chr12 16479639 16479844 -127802645 - MIR SINE MIR -37 225 46 255 322 34 62 chr12 16480144 16480290 -127802199 - L2 LINE L2 -1 3312 3171 253 327 26 18 chr12 16482263 16482376 -127800113 + MIR SINE MIR 26 139 -69 212 360 112 12 chr12 16485372 16485533 -127796956 + L2 LINE L2 3092 3268 -4 623 296 128 32 chr12 16488014 16488419 -127794070 + L2 LINE L2 2851 3294 -19 35159 36 1 1 chr12 16488877 16494377 -127788112 + L1PA2 LINE L1 523 6150 -5 1553 219 175 16 chr12 16494377 16494925 -127787564 - L1MEc LINE L1 -3123 3417 2783 462 235 62 8 chr12 16494924 16495088 -127787401 - L1MEc LINE L1 -5044 1496 1320 * 2023 180 171 35 chr12 16495091 16495663 -127786826 - L1MA9 LINE L1 -38 6274 5625 870 235 56 42 chr12 16495668 16496089 -127786400 - L1MEc LINE L1 -5168 1362 986 292 316 39 96 chr12 16496340 16496568 -127785921 - L1MEc LINE L1 -6017 704 499 2345 100 0 3 chr12 16496568 16496878 -127785611 + AluSg SINE Alu 1 309 -1 292 316 39 96 chr12 16496878 16496981 -127785508 - L1MEc LINE L1 -6222 499 392 263 91 0 23 chr12 16497829 16497873 -127784616 + (GGA)n Simple_repeat Simple_repeat 3 45 0 237 341 12 0 chr12 16497895 16497977 -127784512 - MIR SINE MIR -30 232 150 248 257 14 0 chr12 16498315 16498385 -127784104 + MLT1J1 LTR MaLR 374 444 -2 240 98 122 0 chr12 16498408 16498449 -127784040 - MIR SINE MIR -108 154 109 223 74 0 0 chr12 16500650 16500677 -127781812 + (A)n Simple_repeat Simple_repeat 1 27 0 207 327 188 0 chr12 16500680 16500781 -127781708 - MIR3 SINE MIR -25 183 64 1307 221 62 15 chr12 16501111 16501436 -127781053 - MER2 DNA MER2_type -4 340 1 241 293 13 0 chr12 16501547 16501622 -127780867 - MIR SINE MIR 0 262 187 21 0 0 0 chr12 16503187 16503208 -127779281 + AT_rich Low_complexity Low_complexity 1 21 0 187 354 0 15 chr12 16503683 16503748 -127778741 + L3 LINE CR1 1514 1577 0 804 244 44 36 chr12 16505639 16505889 -127776600 + MIR SINE MIR 11 262 0 531 284 115 0 chr12 16506035 16506243 -127776246 - MIR SINE MIR -2 260 29 190 222 89 0 chr12 16507285 16507330 -127775159 - L2 LINE L2 0 3313 3265 417 348 88 48 chr12 16507790 16508144 -127774345 + L2 LINE L2 2886 3253 -19 2322 179 58 52 chr12 16508297 16508801 -127773688 + MLT2B2 LTR ERVL 1 507 -8 253 229 49 0 chr12 16511077 16511138 -127771351 - L2 LINE L2 0 3272 3209 781 285 29 42 chr12 16511688 16511997 -127770492 - MLT1H LTR MaLR -178 371 67 22 56 0 0 chr12 16512146 16512182 -127770307 + GC_rich Low_complexity Low_complexity 1 36 0 2202 110 36 36 chr12 16512491 16512855 -127769634 + THE1B LTR MaLR 1 364 0 211 343 10 20 chr12 16514180 16514282 -127768207 - L2 LINE L2 -306 2966 2866 341 306 150 38 chr12 16514530 16514929 -127767560 - L2 LINE L2 -802 2512 2069 1987 151 0 3 chr12 16515334 16515633 -127766856 + AluJb SINE Alu 1 298 -14 208 155 86 35 chr12 16517130 16517188 -127765301 + MIR SINE MIR 112 172 -90 246 309 103 0 chr12 16518048 16518145 -127764344 + L2 LINE L2 3163 3269 -3 193 173 24 0 chr12 16518245 16518281 -127764208 - MIR SINE MIR -64 149 94 201 200 25 0 chr12 16518892 16518932 -127763557 - L2 LINE L2 -83 3230 3190 21 0 0 0 chr12 16519400 16519421 -127763068 + AT_rich Low_complexity Low_complexity 1 21 0 206 213 0 0 chr12 16520412 16520459 -127762030 + A-rich Low_complexity Low_complexity 3 49 0 186 264 0 0 chr12 16522430 16522483 -127760006 - MIR SINE MIR -137 125 73 314 271 187 0 chr12 16522504 16522659 -127759830 + L2 LINE L2 3119 3302 -11 402 312 89 47 chr12 16523377 16523758 -127758731 + L2 LINE L2 2877 3273 -40 199 234 78 16 chr12 16523817 16523881 -127758608 + L2 LINE L2 3241 3308 -5 366 184 0 0 chr12 16524312 16524388 -127758101 + (TA)n Simple_repeat Simple_repeat 2 77 0 3511 134 18 3 chr12 16524388 16525105 -127757384 - L1P5 LINE L1 -359 5792 5068 3018 188 5 6 chr12 16525123 16525768 -127756721 + L1P5 LINE L1 4406 5049 -1097 241 317 297 0 chr12 16526261 16526362 -127756127 + L2 LINE L2 3138 3268 -4 275 302 88 50 chr12 16527145 16527304 -127755185 - L2 LINE L2 0 3313 3149 2014 176 45 50 chr12 16527890 16527938 -127754551 - MSTB LTR MaLR 0 426 379 1611 152 64 72 chr12 16527938 16528313 -127754176 + THE1C LTR MaLR 1 372 -3 2014 176 45 50 chr12 16528313 16528684 -127753805 - MSTB LTR MaLR -47 379 9 622 151 40 7 chr12 16528840 16528992 -127753497 + GA-rich Low_complexity Low_complexity 3 159 0 287 103 0 0 chr12 16528996 16529035 -127753454 + (GAA)n Simple_repeat Simple_repeat 2 40 0 539 151 41 29 chr12 16529035 16529207 -127753282 + GA-rich Low_complexity Low_complexity 4 177 0 633 210 43 27 chr12 16529502 16529688 -127752801 - MER53 DNA DNA 0 189 1 225 239 159 74 chr12 16530636 16530799 -127751690 - L3b LINE CR1 -284 1299 1123 239 333 23 0 chr12 16530924 16531011 -127751478 + MIR SINE MIR 60 148 -114 201 74 0 0 chr12 16531392 16531419 -127751070 + (A)n Simple_repeat Simple_repeat 1 27 0 21 36 0 0 chr12 16531458 16531486 -127751003 + AT_rich Low_complexity Low_complexity 1 28 0 2268 102 0 7 chr12 16531795 16532098 -127750391 - AluSx SINE Alu -11 301 1 225 0 0 0 chr12 16532132 16532157 -127750332 + (A)n Simple_repeat Simple_repeat 1 25 0 1569 231 61 16 chr12 16533684 16534125 -127748364 + MLT1C LTR MaLR 7 467 0 216 420 23 0 chr12 16537525 16537613 -127744876 - L2 LINE L2 -54 3218 3129 190 186 0 34 chr12 16538316 16538375 -127744114 + GA-rich Low_complexity Low_complexity 4 60 0 432 301 0 13 chr12 16539086 16539239 -127743250 - AluSx SINE Alu -159 153 3 1898 63 0 0 chr12 16539289 16539528 -127742961 - L1PA5 LINE L1 -11 6143 5905 219 257 129 0 chr12 16540976 16541046 -127741443 + L2 LINE L2 3230 3308 -5 308 254 85 46 chr12 16541522 16541652 -127740837 + L2 LINE L2 3178 3312 -1 1652 144 7 3 chr12 16542867 16543152 -127739337 + L1MA4A LINE L1 6018 6303 0 209 281 35 0 chr12 16543209 16543266 -127739223 - L2 LINE L2 -246 3026 2968 231 303 13 33 chr12 16543561 16543713 -127738776 + CT-rich Low_complexity Low_complexity 1 149 0 2082 98 0 32 chr12 16544327 16544612 -127737877 - AluSx SINE Alu -1 311 36 1725 146 62 46 chr12 16544692 16545061 -127737428 - THE1C LTR MaLR 0 375 1 488 289 37 6 chr12 16545952 16546135 -127736354 + L1 LINE L1 4392 4578 -1568 170 47 0 0 chr12 16546151 16546366 -127736123 + AT_rich Low_complexity Low_complexity 1 215 0 196 101 73 37 chr12 16546366 16546475 -127736014 + (TTA)n Simple_repeat Simple_repeat 1 113 0 52 19 0 0 chr12 16546475 16546529 -127735960 + AT_rich Low_complexity Low_complexity 1 54 0 1942 270 75 65 chr12 16547225 16547834 -127734655 + L2 LINE L2 63 665 -2649 1970 161 0 3 chr12 16547834 16548144 -127734345 - AluJo SINE Alu 0 312 4 1942 270 75 65 chr12 16548144 16548408 -127734081 + L2 LINE L2 665 948 -2366 2113 113 0 0 chr12 16548408 16548683 -127733806 - AluSg SINE Alu -35 275 1 1942 270 75 65 chr12 16548683 16548759 -127733730 + L2 LINE L2 948 1022 -2292 378 186 12 35 chr12 16549217 16549303 -127733186 - L2 LINE L2 -203 3069 2986 1387 203 10 26 chr12 16550107 16550413 -127732076 + AluJb SINE Alu 1 301 -11 1710 232 59 18 chr12 16550575 16551019 -127731470 + LTR40b LTR ERVL 1 462 0 1350 194 46 55 chr12 16551431 16551468 -127731021 + MLT1D LTR MaLR 1 37 -468 1778 202 11 30 chr12 16551468 16551834 -127730655 + MLT1A1 LTR MaLR 5 363 -2 1350 194 46 55 chr12 16551834 16552049 -127730440 + MLT1D LTR MaLR 37 252 -253 447 35 0 0 chr12 16552049 16552106 -127730383 + (GA)n Simple_repeat Simple_repeat 2 58 0 1350 194 46 55 chr12 16552106 16552197 -127730292 + MLT1D LTR MaLR 252 342 -163 1540 150 0 37 chr12 16552197 16552497 -127729992 - L1PA13 LINE L1 -1286 4860 4572 6491 85 3 1 chr12 16552498 16553795 -127728694 + L1PA13 LINE L1 4857 6162 -1 381 141 206 43 chr12 16553795 16553887 -127728602 + MLT1D LTR MaLR 327 433 -72 189 250 206 0 chr12 16554073 16554165 -127728324 - L2 LINE L2 -1880 1434 1324 541 250 77 92 chr12 16554963 16555511 -127726978 + MLT1G LTR MaLR 18 558 -9 739 234 104 9 chr12 16555518 16555740 -127726749 + MIR SINE MIR 20 262 0 325 314 34 8 chr12 16555954 16556072 -127726417 + MIR SINE MIR 122 242 -20 222 37 0 0 chr12 16556517 16556544 -127725945 + (CA)n Simple_repeat Simple_repeat 1 27 0 211 303 0 30 chr12 16557258 16557324 -127725165 - MIR3 SINE MIR -6 202 139 272 341 0 0 chr12 16557359 16557444 -127725045 + MIR SINE MIR 63 147 -115 37 72 0 36 chr12 16557602 16557685 -127724804 + GC_rich Low_complexity Low_complexity 1 80 0 723 46 37 0 chr12 16557886 16557994 -127724495 - L1P LINE L1 -6032 114 3 2036 260 74 61 chr12 16558125 16560504 -127721985 + L1ME3 LINE L1 3205 5954 -208 * 3427 59 6 2 chr12 16560498 16560989 -127721500 - L1P LINE L1 -2553 3593 3101 21 36 0 0 chr12 16561343 16561371 -127721118 + GC_rich Low_complexity Low_complexity 1 28 0 180 193 0 45 chr12 16561522 16561610 -127720879 + G-rich Low_complexity Low_complexity 2 85 0 2190 233 56 11 chr12 16561716 16561912 -127720577 + L1ME LINE L1 4501 4687 -1477 1835 114 0 19 chr12 16561912 16562198 -127720291 + AluSc SINE Alu 22 302 0 2190 233 56 11 chr12 16562198 16563202 -127719287 + L1ME LINE L1 4687 5766 -398 24 32 0 0 chr12 16564938 16564969 -127717520 + AT_rich Low_complexity Low_complexity 1 31 0 705 205 53 25 chr12 16565301 16565568 -127716921 + MLT1A2 LTR MaLR 79 369 -5 564 219 19 19 chr12 16566228 16566388 -127716101 + GA-rich Low_complexity Low_complexity 2 161 0 1185 112 6 6 chr12 16566513 16566682 -127715807 + AluSg/x SINE Alu 133 301 -11 181 200 44 22 chr12 16566938 16566983 -127715506 + L2 LINE L2 3239 3284 -29 28 29 0 0 chr12 16568770 16568805 -127713684 + GC_rich Low_complexity Low_complexity 1 35 0 2215 149 69 9 chr12 16569229 16569665 -127712824 - ERVL LTR ERVL -35 5729 5268 538 206 237 0 chr12 16569813 16569944 -127712545 + MIR SINE MIR 45 206 -56 26 74 0 0 chr12 16570729 16570783 -127711706 + AT_rich Low_complexity Low_complexity 1 54 0 547 104 67 0 chr12 16570787 16570951 -127711538 + (TA)n Simple_repeat Simple_repeat 2 176 0 480 103 48 24 chr12 16570971 16571136 -127711353 + (TA)n Simple_repeat Simple_repeat 2 170 0 2019 137 0 0 chr12 16571230 16571559 -127710930 + L1PB1 LINE L1 5784 6112 -39 444 306 18 14 chr12 16572257 16572418 -127710071 + MIR SINE MIR 2 171 -37 305 163 65 11 chr12 16572500 16572592 -127709897 + L1M LINE L1 5254 5350 -814 556 335 73 11 chr12 16572594 16572881 -127709608 - L2 LINE L2 -634 2680 2376 214 211 0 35 chr12 16572893 16572950 -127709539 + MIR SINE MIR 196 250 -12 1783 170 37 49 chr12 16575227 16575777 -127706712 - MLT2A2 LTR ERVL -8 546 1 210 339 0 0 chr12 16575972 16576031 -127706458 + MIR SINE MIR 91 149 -59 1485 205 66 88 chr12 16576087 16576585 -127705904 + MLT1H LTR MaLR 14 500 -49 1128 144 65 5 chr12 16576585 16576786 -127705703 + MER58A DNA MER1_type 2 214 -10 284 196 0 0 chr12 16576797 16576853 -127705636 + MLT1H LTR MaLR 494 549 0 509 293 112 24 chr12 16576929 16577363 -127705126 - MLT1H1 LTR MaLR -36 519 42 381 93 0 0 chr12 16577512 16577556 -127704933 + (TG)n Simple_repeat Simple_repeat 1 98 0 381 93 0 0 chr12 16577556 16577610 -127704879 + (TG)n Simple_repeat Simple_repeat 2 55 0 1901 255 85 2 chr12 16577952 16578764 -127703725 - L1M4 LINE L1 -1191 4955 4077 372 256 73 80 chr12 16579026 16579163 -127703326 + L2 LINE L2 3137 3272 0 425 303 19 49 chr12 16580303 16580465 -127702024 - MIR3 SINE MIR -10 198 42 2282 96 0 3 chr12 16581099 16581401 -127701088 - AluSg1 SINE Alu -8 301 1 237 33 0 0 chr12 16582614 16582644 -127699845 + (TG)n Simple_repeat Simple_repeat 1 30 0 494 313 70 41 chr12 16583603 16584018 -127698471 - L2 LINE L2 -126 3187 2761 362 349 33 13 chr12 16585147 16585299 -127697190 + MIR SINE MIR 13 167 -95 180 0 0 0 chr12 16585588 16585608 -127696881 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 28 29 0 0 chr12 16585870 16585905 -127696584 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr12 16587519 16587542 -127694947 + AT_rich Low_complexity Low_complexity 1 23 0 1657 147 48 20 chr12 16587895 16588015 -127694474 + AluJo SINE Alu 1 116 -196 180 0 0 0 chr12 16588015 16588035 -127694454 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1657 147 48 20 chr12 16588035 16588207 -127694282 + AluJo SINE Alu 116 301 -11 1810 157 20 10 chr12 16588427 16588720 -127693769 - AluJo SINE Alu -16 296 1 47 33 0 0 chr12 16589618 16589679 -127692810 + AT_rich Low_complexity Low_complexity 1 61 0 802 127 0 8 chr12 16589680 16589798 -127692691 - FLAM_C SINE Alu -22 121 5 183 80 0 0 chr12 16589820 16589845 -127692644 + (TG)n Simple_repeat Simple_repeat 2 26 0 308 235 0 0 chr12 16589845 16589913 -127692576 + L1MC4 LINE L1 6636 6703 -1339 214 202 35 9 chr12 16589918 16590032 -127692457 + (TA)n Simple_repeat Simple_repeat 1 117 0 1754 309 132 26 chr12 16590076 16590142 -127692347 - L2 LINE L2 -33 3280 3222 1752 127 0 12 chr12 16590142 16590394 -127692095 + AluSx SINE Alu 64 312 0 1754 309 132 26 chr12 16590394 16591632 -127690857 - L2 LINE L2 -91 3222 1835 23 0 0 0 chr12 16593515 16593538 -127688951 + AT_rich Low_complexity Low_complexity 1 23 0 401 0 20 0 chr12 16593918 16593967 -127688522 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 546 295 120 13 chr12 16594689 16594923 -127687566 + MIR SINE MIR 2 260 -2 207 162 0 0 chr12 16595425 16595462 -127687027 + (TG)n Simple_repeat Simple_repeat 1 37 0 518 132 37 31 chr12 16595676 16595922 -127686567 + CT-rich Low_complexity Low_complexity 1 247 0 330 132 0 0 chr12 16595956 16596009 -127686480 + (TA)n Simple_repeat Simple_repeat 2 54 0 239 194 69 0 chr12 16596076 16596148 -127686341 + L1MCa LINE L1 1992 2068 -4358 333 118 0 0 chr12 16596148 16596199 -127686290 + (TA)n Simple_repeat Simple_repeat 1 51 0 26 30 0 0 chr12 16598142 16598175 -127684314 + AT_rich Low_complexity Low_complexity 1 33 0 219 88 0 0 chr12 16598361 16598395 -127684094 + (CA)n Simple_repeat Simple_repeat 1 34 0 285 75 0 0 chr12 16600945 16600985 -127681504 + (TG)n Simple_repeat Simple_repeat 1 40 0 255 227 62 86 chr12 16601154 16601282 -127681207 + MIR SINE MIR 30 154 -108 205 95 24 24 chr12 16602980 16603022 -127679467 + (TTCC)n Simple_repeat Simple_repeat 2 43 0 668 163 62 31 chr12 16603022 16603151 -127679338 - FLAM_C SINE Alu 0 133 1 502 337 49 0 chr12 16603393 16603556 -127678933 - MIR SINE MIR -86 176 6 952 259 41 4 chr12 16603580 16603823 -127678666 - MIR SINE MIR -3 259 8 206 213 0 82 chr12 16604373 16604434 -127678055 + L2 LINE L2 2564 2619 -695 452 249 67 84 chr12 16604449 16604674 -127677815 + MER102a DNA MER1_type 2 222 -108 402 241 9 18 chr12 16604766 16604878 -127677611 + MER102a DNA MER1_type 214 324 -6 200 214 18 0 chr12 16604963 16605019 -127677470 + (TATG)n Simple_repeat Simple_repeat 4 60 0 2827 10 0 0 chr12 16605087 16605396 -127677093 + AluYa5 SINE Alu 1 309 -2 1899 272 152 36 chr12 16606142 16607386 -127675103 - L2 LINE L2 0 3313 1917 318 307 73 20 chr12 16607395 16607545 -127674944 - L2 LINE L2 -1638 1676 1519 926 201 11 32 chr12 16607558 16607747 -127674742 + MER5A DNA MER1_type 3 187 -2 3034 240 60 20 chr12 16607896 16608931 -127673558 - MER69 DNA AcHobo 0 2526 1451 1116 285 85 8 chr12 16609300 16609665 -127672824 - MER69 DNA AcHobo -2133 393 1 1148 198 87 5 chr12 16610003 16610455 -127672034 + MER34 LTR ERV1 27 542 0 868 190 145 5 chr12 16611094 16611294 -127671195 + MER34 LTR ERV1 315 542 0 26 0 0 0 chr12 16612370 16612396 -127670093 + AT_rich Low_complexity Low_complexity 1 26 0 1259 282 127 25 chr12 16613822 16614525 -127667964 - L1MDa LINE L1 -772 5768 4951 252 0 0 0 chr12 16614525 16614553 -127667936 + (CA)n Simple_repeat Simple_repeat 1 28 0 1259 282 127 25 chr12 16614553 16614754 -127667735 - L1MDa LINE L1 -1589 4951 4772 21 71 0 0 chr12 16614874 16614916 -127667573 + AT_rich Low_complexity Low_complexity 1 42 0 228 288 0 17 chr12 16614938 16614997 -127667492 - L1MDa LINE L1 -2037 4503 4446 871 291 52 5 chr12 16615156 16615578 -127666911 - L1MDa LINE L1 -2264 4276 3835 422 331 99 15 chr12 16615639 16616417 -127666072 - L1MDa LINE L1 -4092 2629 1763 291 273 206 26 chr12 16616535 16616729 -127665760 + L2 LINE L2 2350 2578 -736 2592 209 22 0 chr12 16616729 16617182 -127665307 + MLT2B2 LTR ERVL 1 467 -48 450 0 0 0 chr12 16617182 16617232 -127665257 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2592 209 22 0 chr12 16617232 16617267 -127665222 + MLT2B2 LTR ERVL 467 500 -15 1176 269 102 26 chr12 16617276 16617963 -127664526 + L2 LINE L2 2575 3308 -5 2398 130 0 16 chr12 16618184 16618554 -127663935 + THE1B LTR MaLR 1 364 0 206 293 114 29 chr12 16619392 16619532 -127662957 - L2 LINE L2 0 3313 3162 23 150 0 0 chr12 16619866 16619906 -127662583 + AT_rich Low_complexity Low_complexity 1 40 0 450 0 0 0 chr12 16620531 16620581 -127661908 + (CA)n Simple_repeat Simple_repeat 2 51 0 295 283 72 36 chr12 16621657 16621795 -127660694 - L1ME3 LINE L1 -2 6160 6018 1322 197 122 3 chr12 16621817 16622112 -127660377 + MER7A DNA MER2_type 19 346 0 356 266 48 0 chr12 16622166 16622191 -127660298 - L1MA9 LINE L1 -17 6295 6271 1434 225 92 30 chr12 16622191 16622715 -127659774 - L1ME1 LINE L1 -43 6123 5568 12130 42 2 4 chr12 16622718 16626425 -127656064 - L1PA5 LINE L1 0 6154 2353 297 191 131 12 chr12 16626581 16626665 -127655824 - MER5C DNA MER1_type -202 122 29 485 267 61 6 chr12 16627137 16627302 -127655187 - MER112 DNA MER1_type -84 176 3 187 313 62 12 chr12 16627320 16627400 -127655089 + L2 LINE L2 3189 3272 0 21 57 0 0 chr12 16627458 16627493 -127654996 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 16628372 16628393 -127654096 + AT_rich Low_complexity Low_complexity 1 21 0 390 356 75 0 chr12 16628448 16628594 -127653895 + MER5B DNA MER1_type 17 173 -5 595 78 0 0 chr12 16629116 16629206 -127653283 + L1PA15 LINE L1 6071 6160 -5 1247 185 60 47 chr12 16630935 16631254 -127651235 - MER33 DNA MER1_type -1 323 1 366 204 80 0 chr12 16631431 16631519 -127650970 - MIR SINE MIR -56 206 112 225 94 0 0 chr12 16632526 16632558 -127649931 + (TTCTCC)n Simple_repeat Simple_repeat 5 36 0 333 0 0 0 chr12 16633989 16634026 -127648463 + (CA)n Simple_repeat Simple_repeat 2 38 0 342 0 0 0 chr12 16634959 16634997 -127647492 + (TG)n Simple_repeat Simple_repeat 2 39 0 543 275 66 75 chr12 16635052 16635386 -127647103 + MLT1I LTR MaLR 79 409 0 683 253 150 55 chr12 16635864 16636358 -127646131 + MLT1G LTR MaLR 48 588 -2 420 292 46 60 chr12 16637144 16637425 -127645064 + MLT1K LTR MaLR 309 585 -3 908 292 101 32 chr12 16637443 16637851 -127644638 - MLT1J2 LTR MaLR -14 436 1 451 307 63 29 chr12 16638346 16638551 -127643938 - LTR33 LTR ERVL -5 516 305 369 276 63 8 chr12 16639301 16639428 -127643061 - MIR SINE MIR -45 217 84 216 286 160 42 chr12 16640891 16641010 -127641479 - L2 LINE L2 -5 3308 3176 6703 55 24 5 chr12 16641268 16642175 -127640314 + L1PA7 LINE L1 5228 6151 -3 27 49 0 0 chr12 16642897 16642938 -127639551 + AT_rich Low_complexity Low_complexity 1 41 0 186 43 0 0 chr12 16643591 16643614 -127638875 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 244 390 96 14 chr12 16643770 16644395 -127638094 - L2 LINE L2 -147 3125 2451 865 308 28 4 chr12 16644580 16644833 -127637656 + MIR SINE MIR 4 262 0 383 221 53 11 chr12 16644840 16644935 -127637554 - MIR SINE MIR -57 205 107 310 256 0 45 chr12 16645076 16645209 -127637280 + G-rich Low_complexity Low_complexity 6 132 0 256 311 0 0 chr12 16650448 16650509 -127631980 - MIR SINE MIR -155 107 47 762 159 0 14 chr12 16651379 16651517 -127630972 - FLAM_C SINE Alu -2 141 6 831 301 51 58 chr12 16651715 16652110 -127630379 - L2 LINE L2 -1 3312 2921 691 233 89 41 chr12 16652659 16652951 -127629538 + MLT1J LTR MaLR 6 311 -200 2141 117 0 3 chr12 16653239 16653538 -127628951 - AluSc SINE Alu -11 298 1 225 277 68 68 chr12 16653584 16654068 -127628421 + L1MEc LINE L1 1838 2321 -4075 947 244 87 8 chr12 16654144 16654454 -127628035 + L1MEc LINE L1 2597 2942 -3273 1449 239 0 17 chr12 16654454 16654755 -127627734 - AluJo SINE Alu -16 296 1 947 244 87 8 chr12 16654755 16654813 -127627676 + L1MEc LINE L1 2942 2994 -3221 338 232 119 81 chr12 16655405 16655590 -127626899 + Charlie8 DNA MER1_type 3 194 -2223 612 230 7 35 chr12 16655909 16656104 -127626385 - MLT1F LTR MaLR -11 531 370 457 279 35 23 chr12 16656241 16656413 -127626076 - MLT1F LTR MaLR -421 174 1 255 312 42 3 chr12 16656999 16657141 -127625348 - MIR3 SINE MIR -63 145 15 189 0 0 0 chr12 16657229 16657250 -127625239 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 748 287 94 38 chr12 16657748 16658249 -127624240 + MLT1H LTR MaLR 21 549 0 249 315 19 23 chr12 16658377 16658573 -127623916 + MLT1H-int LTR MaLR 288 506 -865 2201 114 56 14 chr12 16658573 16658931 -127623558 - THE1C LTR MaLR 0 375 3 249 315 19 23 chr12 16658931 16658967 -127623522 + MLT1H-int LTR MaLR 506 541 -830 669 223 87 35 chr12 16659975 16660204 -127622285 + MLT1H LTR MaLR 1 241 -308 257 164 49 49 chr12 16660244 16660305 -127622184 + MLT1H LTR MaLR 331 391 -164 279 198 116 35 chr12 16660342 16660428 -127622061 + MLT1H LTR MaLR 456 548 -1 525 256 68 11 chr12 16661018 16661209 -127621280 - MER46C DNA MER2_type 0 338 137 3820 226 39 48 chr12 16661347 16662463 -127620026 - MSTD-int LTR MaLR -627 1108 2 1453 197 154 6 chr12 16662465 16662810 -127619679 - MSTD LTR MaLR 0 396 1 518 321 176 28 chr12 16662837 16663305 -127619184 - L2 LINE L2 0 3313 2772 1784 282 68 40 chr12 16663321 16664624 -127617865 + L1MEc LINE L1 37 1376 -5020 947 285 83 46 chr12 16664760 16665037 -127617452 - L1MEc LINE L1 -4576 1820 1555 2258 71 0 10 chr12 16665037 16665333 -127617156 - AluY SINE Alu -18 293 1 947 285 83 46 chr12 16665333 16665663 -127616826 - L1MEc LINE L1 -4841 1555 1239 306 0 0 0 chr12 16665663 16665697 -127616792 + (TG)n Simple_repeat Simple_repeat 1 34 0 947 285 83 46 chr12 16665697 16666067 -127616422 - L1MEc LINE L1 -5157 1239 806 418 319 71 45 chr12 16666106 16666534 -127615955 - L1MEc LINE L1 -5663 733 36 23 0 0 0 chr12 16666775 16666798 -127615691 + AT_rich Low_complexity Low_complexity 1 23 0 238 300 43 0 chr12 16666825 16666895 -127615594 - L2 LINE L2 -1 3271 3199 435 321 8 0 chr12 16667586 16667720 -127614769 - MIR SINE MIR -25 237 103 279 354 102 16 chr12 16667898 16668065 -127614424 - MIR SINE MIR -62 146 6 22 35 0 0 chr12 16668109 16668138 -127614351 + AT_rich Low_complexity Low_complexity 1 29 0 640 221 0 8 chr12 16668767 16668889 -127613600 + FLAM_A SINE Alu 1 121 -12 392 276 141 56 chr12 16670562 16670712 -127611777 + L2 LINE L2 2943 3079 -193 195 42 0 0 chr12 16670712 16670736 -127611753 + (CA)n Simple_repeat Simple_repeat 1 24 0 392 276 141 56 chr12 16670736 16670889 -127611600 + L2 LINE L2 3079 3272 0 300 154 22 22 chr12 16672012 16672103 -127610386 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 220 236 18 0 chr12 16672125 16672180 -127610309 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 403 281 62 12 chr12 16673041 16673201 -127609288 - L1ME4a LINE L1 -11 6110 5943 780 116 75 7 chr12 16673947 16674093 -127608396 + THE1C LTR MaLR 200 355 -20 2606 48 0 0 chr12 16674312 16674623 -127607866 - AluY SINE Alu 0 311 1 790 130 0 30 chr12 16676306 16676437 -127606052 + FLAM_C SINE Alu 3 129 -4 248 329 162 45 chr12 16676457 16676901 -127605588 + L2 LINE L2 691 1186 -2128 1949 114 0 7 chr12 16677009 16677308 -127605181 - L1P4 LINE L1 -471 5690 5394 338 333 117 46 chr12 16678057 16678555 -127603934 - L2 LINE L2 -990 2324 1792 654 198 70 0 chr12 16678712 16678869 -127603620 + MER105 DNA DNA 1 168 -36 366 259 191 8 chr12 16678871 16679002 -127603487 + MER5A DNA MER1_type 35 189 0 601 247 27 70 chr12 16679010 16679196 -127603293 - MER5B DNA MER1_type 0 178 1 21 36 0 0 chr12 16679382 16679410 -127603079 + AT_rich Low_complexity Low_complexity 1 28 0 747 164 14 14 chr12 16680052 16680198 -127602291 + THE1C LTR MaLR 1 146 -229 2413 144 6 18 chr12 16680302 16680717 -127601772 - L1P LINE L1 -743 5403 5017 2098 111 10 16 chr12 16680717 16681023 -127601466 - AluSq SINE Alu -9 304 1 2413 144 6 18 chr12 16681023 16681158 -127601331 - L1P LINE L1 -1129 5017 4882 2135 192 31 2 chr12 16681159 16681575 -127600914 + MSTA LTR MaLR 1 428 0 6210 173 3 6 chr12 16681575 16682695 -127599794 + MSTA-int LTR MaLR 1 1116 -535 4947 32 2 3 chr12 16682812 16683405 -127599084 + L1PA4 LINE L1 5564 6155 0 25 31 0 0 chr12 16683405 16683437 -127599052 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr12 16683637 16683663 -127598826 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr12 16684458 16684482 -127598007 + AT_rich Low_complexity Low_complexity 1 24 0 2134 152 0 0 chr12 16684797 16685107 -127597382 - AluSx SINE Alu -2 310 1 302 376 32 0 chr12 16685348 16685473 -127597016 + MER5B DNA MER1_type 2 130 -48 2141 154 63 49 chr12 16685477 16686003 -127596486 - L1MB3 LINE L1 0 6183 5651 379 399 7 13 chr12 16686141 16686449 -127596040 + HERV16 LTR ERVL 1271 1576 -3420 17873 53 0 6 chr12 16686597 16688935 -127593554 - L1P LINE L1 -3820 2326 1 183 184 20 41 chr12 16689299 16689348 -127593141 - L2 LINE L2 0 3313 3266 25 0 0 0 chr12 16690208 16690233 -127592256 + AT_rich Low_complexity Low_complexity 1 25 0 334 368 21 51 chr12 16690629 16691058 -127591431 - LTR16C LTR ERVL -4 487 72 21 0 0 0 chr12 16691402 16691423 -127591066 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 16691464 16691488 -127591001 + AT_rich Low_complexity Low_complexity 1 24 0 366 299 175 16 chr12 16691609 16691803 -127590686 - L1MEd LINE L1 -5208 911 687 468 86 0 0 chr12 16691837 16691907 -127590582 + (GA)n Simple_repeat Simple_repeat 1 70 0 338 363 87 45 chr12 16691911 16692266 -127590223 - L1MEd LINE L1 -5479 640 271 1034 57 0 0 chr12 16692343 16692465 -127590024 - AluSq/x SINE Alu -180 133 12 249 98 0 0 chr12 16692537 16692578 -127589911 + (TG)n Simple_repeat Simple_repeat 2 42 0 4688 211 62 43 chr12 16692749 16693378 -127589111 + L1M4 LINE L1 3807 4423 -1761 1853 156 57 79 chr12 16693378 16693820 -127588669 + MSTB1 LTR MaLR 1 432 0 4688 211 62 43 chr12 16693820 16694310 -127588179 + L1M4 LINE L1 4423 4903 -1281 2240 114 0 7 chr12 16694310 16694609 -127587880 - AluSc SINE Alu -12 297 1 4688 211 62 43 chr12 16694609 16695160 -127587329 + L1M4 LINE L1 4903 5513 -671 2542 119 6 3 chr12 16695160 16695521 -127586968 - THE1B LTR MaLR 0 364 3 4688 211 62 43 chr12 16695521 16695691 -127586798 + L1M4 LINE L1 5513 5678 -506 16520 42 6 2 chr12 16696446 16698545 -127583944 + L1P LINE L1 2913 5020 -1126 31 0 0 0 chr12 16699708 16699739 -127582750 + AT_rich Low_complexity Low_complexity 1 31 0 188 184 0 0 chr12 16700724 16700762 -127581727 - L2 LINE L2 -14 3299 3262 6744 60 4 8 chr12 16701847 16702834 -127579655 - L1PA8 LINE L1 -4 6168 5167 727 118 0 0 chr12 16704107 16704217 -127578272 - AluY SINE Alu -201 110 1 254 302 54 40 chr12 16704982 16705131 -127577358 + L2 LINE L2 2670 2820 -494 672 259 81 10 chr12 16705966 16706163 -127576326 + MIR SINE MIR 8 218 -44 721 280 51 16 chr12 16706310 16706567 -127575922 - MLT1F1 LTR MaLR -300 267 2 480 171 9 0 chr12 16707538 16707643 -127574846 + L1MA8 LINE L1 6186 6291 0 1095 135 48 70 chr12 16708711 16708941 -127573548 + AluJo SINE Alu 87 311 -1 28 48 0 0 chr12 16708974 16709016 -127573473 + AT_rich Low_complexity Low_complexity 1 42 0 7293 41 19 11 chr12 16709157 16710166 -127572323 - L1PA5 LINE L1 -5 6149 5139 720 241 25 46 chr12 16710275 16710557 -127571932 - L1ME LINE L1 -632 5599 5324 337 275 64 7 chr12 16710559 16711303 -127571186 - L1ME LINE L1 -2160 4055 3095 37 23 0 0 chr12 16711330 16711374 -127571115 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr12 16711511 16711536 -127570953 + AT_rich Low_complexity Low_complexity 1 25 0 1232 146 15 0 chr12 16711560 16711765 -127570724 - MER2 DNA MER2_type -136 209 2 497 178 9 9 chr12 16711765 16711866 -127570623 + MER53 DNA DNA 88 188 -1 295 269 28 99 chr12 16711875 16712016 -127570473 + MIR SINE MIR 102 232 -30 1526 203 12 34 chr12 16713663 16713698 -127568791 - MST-int LTR MaLR -6 1645 1611 4007 138 13 5 chr12 16713698 16714328 -127568161 + MER41B LTR ERV1 1 635 0 1526 203 12 34 chr12 16714328 16714618 -127567871 - MST-int LTR MaLR -40 1611 1327 213 94 0 0 chr12 16715286 16715318 -127567171 + (GA)n Simple_repeat Simple_repeat 2 33 0 229 309 37 98 chr12 16716082 16716458 -127566031 - L2 LINE L2 -76 3237 2885 229 323 21 10 chr12 16716835 16716931 -127565558 - L2 LINE L2 -496 2818 2722 1702 293 59 20 chr12 16717247 16718152 -127564337 + L1M4 LINE L1 3102 4041 -2105 467 318 42 8 chr12 16718327 16718563 -127563926 - MLT1-int LTR MaLR -843 528 285 310 259 19 19 chr12 16718555 16718663 -127563826 - MLT1-int LTR MaLR -1623 112 5 * 305 272 59 88 chr12 16720367 16720503 -127561986 - L2 LINE L2 -4 3309 3178 451 267 121 56 chr12 16720576 16720808 -127561681 + LTR16C LTR ERVL 1 247 -244 336 205 116 54 chr12 16720936 16721048 -127561441 - MIR SINE MIR 0 262 144 405 274 9 19 chr12 16722093 16722308 -127560181 - L1ME LINE L1 -4012 2384 2172 490 204 9 0 chr12 16722416 16722524 -127559965 - L1M LINE L1 -741 5423 5315 248 226 66 38 chr12 16722537 16722643 -127559846 + L1M4 LINE L1 5101 5209 -937 244 301 151 0 chr12 16722711 16722804 -127559685 + L2 LINE L2 3207 3313 0 258 296 25 0 chr12 16723203 16723284 -127559205 + MIR3 SINE MIR 113 195 -13 207 0 0 0 chr12 16724295 16724318 -127558171 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 642 96 10 0 chr12 16724422 16724526 -127557963 - HSMAR2 DNA Mariner -1 1301 1197 4210 47 0 4 chr12 16724654 16725183 -127557306 + L1PA4 LINE L1 5629 6155 0 2137 121 3 3 chr12 16725203 16725501 -127556988 + AluSx SINE Alu 4 301 -11 798 292 54 21 chr12 16725506 16725838 -127556651 - HERV16 LTR ERVL -2454 2542 2200 6287 139 13 4 chr12 16725999 16727003 -127555486 - HSMAR2 DNA Mariner -124 1178 166 1473 253 78 45 chr12 16727208 16727577 -127554912 + L1MEc LINE L1 1575 1930 -4285 537 16 0 0 chr12 16727577 16727639 -127554850 + (CA)n Simple_repeat Simple_repeat 1 62 0 1473 253 78 45 chr12 16727639 16728492 -127553997 + L1MEc LINE L1 1930 2797 -3418 190 221 130 26 chr12 16729016 16729093 -127553396 + MIR3 SINE MIR 117 201 -7 254 277 76 8 chr12 16729595 16729714 -127552775 - LTR33A LTR ERVL -24 499 373 241 179 75 60 chr12 16729979 16730046 -127552443 - LTR33A LTR ERVL -401 122 55 2459 76 0 13 chr12 16730537 16730851 -127551638 + AluY SINE Alu 1 310 -1 22 70 0 0 chr12 16730893 16730936 -127551553 + AT_rich Low_complexity Low_complexity 1 43 0 543 305 18 24 chr12 16732003 16732167 -127550322 + MIR SINE MIR 12 174 -88 720 241 80 16 chr12 16732170 16732419 -127550070 + Charlie4a DNA MER1_type 244 508 0 259 319 82 7 chr12 16732425 16732560 -127549929 + MLT1J LTR MaLR 326 470 -41 336 289 67 62 chr12 16732602 16732969 -127549520 - HAL1b LINE L1 -780 1550 1186 2113 140 42 22 chr12 16732969 16733326 -127549163 + THE1B LTR MaLR 1 364 0 336 289 67 62 chr12 16733326 16733431 -127549058 - HAL1b LINE L1 -1144 1186 89 983 283 56 24 chr12 16733634 16734225 -127548264 + L1MCa LINE L1 961 1570 -4856 2743 19 3 0 chr12 16734341 16734651 -127547838 - AluY SINE Alu 0 311 1 1563 116 9 17 chr12 16734653 16734885 -127547604 - AluSp SINE Alu -15 298 69 690 236 40 25 chr12 16734987 16735186 -127547303 + L1ME2 LINE L1 5857 6058 -106 1417 211 69 61 chr12 16735194 16735587 -127546902 - MSTD LTR MaLR 0 396 1 2264 238 67 7 chr12 16735592 16736171 -127546318 - MSTD-int LTR MaLR -6 1729 1116 227 102 0 0 chr12 16736966 16737015 -127545474 - LTR66 LTR ERVL -167 443 395 318 50 0 0 chr12 16737016 16737056 -127545433 + (CA)n Simple_repeat Simple_repeat 2 41 0 203 139 23 23 chr12 16737057 16737100 -127545389 + (TA)n Simple_repeat Simple_repeat 2 44 0 419 289 113 50 chr12 16737249 16737630 -127544859 + MLT1E LTR MaLR 42 494 -101 287 313 129 18 chr12 16738345 16738508 -127543981 - MIR SINE MIR -8 254 74 284 252 154 16 chr12 16839368 16839491 -127442998 - MIR SINE MIR -6 256 117 453 294 19 47 chr12 16839725 16839782 -127442707 - L2 LINE L2 0 3313 3256 793 213 34 34 chr12 16839782 16839989 -127442500 + MER3 DNA MER1_type 3 209 0 453 294 19 47 chr12 16839989 16840086 -127442403 - L2 LINE L2 -57 3256 3164 1683 107 0 0 chr12 16840086 16840310 -127442179 + AluSq SINE Alu 1 224 -89 453 294 19 47 chr12 16840310 16840365 -127442124 - L2 LINE L2 -149 3164 3109 2084 111 3 10 chr12 16840753 16841051 -127441438 + AluSg SINE Alu 1 296 -14 552 279 77 11 chr12 16841832 16842015 -127440474 - MIR SINE MIR -37 225 31 23 0 0 0 chr12 16842572 16842595 -127439894 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr12 16842949 16842972 -127439517 + AT_rich Low_complexity Low_complexity 1 23 0 358 315 69 15 chr12 16843670 16843800 -127438689 + MIR SINE MIR 16 152 -56 1960 147 0 3 chr12 16844268 16844575 -127437914 + AluSg SINE Alu 1 306 -4 814 266 86 4 chr12 16845590 16845823 -127436666 - MIR SINE MIR -10 252 1 2303 110 0 0 chr12 16847263 16847572 -127434917 + AluSc SINE Alu 1 309 0 240 335 129 52 chr12 16847633 16848062 -127434427 - L2 LINE L2 -73 3199 2751 210 37 0 0 chr12 16848238 16848265 -127434224 + (T)n Simple_repeat Simple_repeat 1 27 0 3147 173 28 11 chr12 16848533 16849146 -127433343 + L1MB3 LINE L1 5553 6175 -8 205 200 0 0 chr12 16849346 16849381 -127433108 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 731 172 108 6 chr12 16850566 16850723 -127431766 + MER61A LTR ERV1 1 173 -170 186 326 186 8 chr12 16850736 16850865 -127431624 + L2 LINE L2 2907 3058 -214 316 195 161 0 chr12 16851318 16851405 -127431084 + MIR SINE MIR 73 173 -89 695 219 112 0 chr12 16851598 16851767 -127430722 - MER58C DNA MER1_type 0 215 28 879 232 49 5 chr12 16852547 16852771 -127429718 + MIR SINE MIR 19 252 -10 2102 129 12 21 chr12 16854156 16854496 -127427993 - MER1B DNA MER1_type 0 337 1 1527 178 58 4 chr12 16855274 16855427 -127427062 - AluJo SINE Alu -22 290 147 450 0 0 0 chr12 16855427 16855477 -127427012 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1527 178 58 4 chr12 16855477 16855598 -127426891 - AluJo SINE Alu -165 147 1 243 284 0 25 chr12 16857578 16857659 -127424830 - MIR SINE MIR -89 173 95 296 304 82 10 chr12 16857660 16857854 -127424635 + L1MEd LINE L1 2 209 -5910 346 349 73 81 chr12 16858042 16858469 -127424020 + L1MEd LINE L1 264 686 -5433 195 69 0 0 chr12 16858469 16858498 -127423991 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 346 349 73 81 chr12 16858498 16858660 -127423829 + L1MEd LINE L1 686 848 -5271 1502 198 0 7 chr12 16858752 16859030 -127423459 + AluJo SINE Alu 1 276 -36 229 200 22 0 chr12 16859040 16859085 -127423404 - MER75 DNA T2_type 0 514 469 1172 251 69 14 chr12 16859421 16859767 -127422722 + LTR16A LTR ERVL 21 385 -65 1732 104 60 19 chr12 16859772 16860040 -127422449 - AluSx SINE Alu 0 312 34 1109 84 0 7 chr12 16860040 16860182 -127422307 - AluSq/x SINE Alu -172 141 1 467 183 0 12 chr12 16860182 16860264 -127422225 + LTR16A LTR ERVL 370 450 0 230 273 0 39 chr12 16860489 16860566 -127421923 - MIR3 SINE MIR -3 205 132 2326 113 0 0 chr12 16861698 16862008 -127420481 + AluSx SINE Alu 1 310 -2 489 285 16 7 chr12 16862448 16862617 -127419872 + MIR SINE MIR 17 189 -19 228 205 0 0 chr12 16863049 16863088 -127419401 - tRNA-Lys-AAG tRNA tRNA -37 39 1 306 194 45 0 chr12 16863570 16863637 -127418852 - L1MCa LINE L1 -4361 2065 1996 347 338 171 0 chr12 16864407 16864623 -127417866 + MIR SINE MIR 2 254 -8 652 221 16 0 chr12 16864721 16864843 -127417646 - FLAM_A SINE Alu -9 124 1 450 285 79 67 chr12 16864996 16865525 -127416964 + L2 LINE L2 2708 3284 -29 34 0 0 0 chr12 16866186 16866220 -127416269 + AT_rich Low_complexity Low_complexity 1 34 0 276 245 129 20 chr12 16866220 16866367 -127416122 - L1ME4a LINE L1 -5 6116 5954 1374 64 139 0 chr12 16866491 16866693 -127415796 + MER30 DNA MER1_type 1 230 0 374 294 32 32 chr12 16866827 16866978 -127415511 - L1ME4a LINE L1 -424 5697 5544 1394 199 74 34 chr12 16866978 16867329 -127415160 - MLT1A1 LTR MaLR 0 365 1 374 294 32 32 chr12 16867329 16867398 -127415091 - L1ME4a LINE L1 -576 5545 5477 1648 174 51 4 chr12 16867435 16867711 -127414778 + AluJb SINE Alu 1 289 -23 2166 134 36 28 chr12 16868958 16869317 -127413172 + THE1B LTR MaLR 1 362 -2 723 133 7 84 chr12 16869719 16869862 -127412627 + FLAM_C SINE Alu 2 133 0 217 298 0 0 chr12 16871162 16871209 -127411280 - L2 LINE L2 -12 3260 3214 2431 79 0 0 chr12 16871971 16872274 -127410215 + AluSg SINE Alu 1 303 -7 397 113 0 0 chr12 16873232 16873294 -127409195 + L1M4 LINE L1 5175 5236 -910 2657 165 46 33 chr12 16873307 16873984 -127408505 - L1MCa LINE L1 -4604 1822 1046 868 248 34 4 chr12 16873982 16874248 -127408241 - L1M4 LINE L1 -3160 2986 2713 * 457 301 85 34 chr12 16874540 16874776 -127407713 - MIR SINE MIR -2 260 13 2125 123 3 0 chr12 16875699 16875991 -127406498 - AluSx SINE Alu -19 293 1 227 303 142 19 chr12 16876769 16876931 -127405558 - MIR SINE MIR 0 262 81 1885 133 28 69 chr12 16877495 16877886 -127404603 - THE1C LTR MaLR 0 375 1 1638 170 67 3 chr12 16878251 16878534 -127403955 - AluJb SINE Alu -11 301 1 2473 52 0 52 chr12 16878806 16879134 -127403355 + AluY SINE Alu 1 311 0 258 244 59 104 chr12 16879230 16879365 -127403124 - MIR SINE MIR -50 212 84 181 282 0 70 chr12 16879813 16879884 -127402605 - MIR SINE MIR -37 225 160 1934 165 0 3 chr12 16880283 16880580 -127401909 - AluJo SINE Alu -16 296 1 256 265 0 0 chr12 16881649 16881717 -127400772 - L1MC5 LINE L1 -723 7238 7171 1154 239 20 0 chr12 16881854 16882101 -127400388 - MIR SINE MIR 0 262 11 22 0 0 0 chr12 16882175 16882197 -127400292 + AT_rich Low_complexity Low_complexity 1 22 0 260 264 64 9 chr12 16882338 16882448 -127400041 + L1MC5 LINE L1 7014 7129 -832 404 319 57 7 chr12 16883067 16883208 -127399281 + L2 LINE L2 3117 3264 -8 616 318 59 13 chr12 16883445 16883684 -127398805 - MIR SINE MIR 0 262 13 2280 222 28 8 chr12 16883703 16884159 -127398330 + MLT2B2 LTR ERVL 1 469 -46 273 57 0 0 chr12 16884159 16884194 -127398295 + (TCCA)n Simple_repeat Simple_repeat 4 38 0 2280 222 28 8 chr12 16884194 16884242 -127398247 + MLT2B2 LTR ERVL 469 515 0 2174 97 0 0 chr12 16884659 16884938 -127397551 + AluSg SINE Alu 1 279 -31 355 19 19 19 chr12 16884943 16884996 -127397493 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 391 280 74 51 chr12 16885073 16885248 -127397241 + MIR SINE MIR 23 201 -61 788 288 88 0 chr12 16885486 16885691 -127396798 + MER45C DNA AcHobo 1 223 -730 507 269 117 0 chr12 16885728 16885873 -127396616 + MER45C DNA AcHobo 421 582 -371 5974 43 0 1 chr12 16886127 16886847 -127395642 - L1PA5 LINE L1 -20 6134 5416 * 13654 44 3 3 chr12 16886846 16888591 -127393898 + L1P LINE L1 3680 5424 -730 669 260 28 11 chr12 16888930 16889111 -127393378 - MIR SINE MIR -36 226 43 2104 102 44 0 chr12 16889262 16889555 -127392934 - AluSc SINE Alu -3 306 1 233 260 20 120 chr12 16889666 16889714 -127392775 + MIR3 SINE MIR 115 150 -58 337 273 98 38 chr12 16889714 16889897 -127392592 - MER117 DNA MER1_type -3 194 1 233 260 20 120 chr12 16889897 16889948 -127392541 + MIR3 SINE MIR 149 204 -4 247 282 167 26 chr12 16890675 16890831 -127391658 + L2 LINE L2 2268 2445 -869 297 321 186 7 chr12 16891017 16891157 -127391332 + MIR3 SINE MIR 16 180 -28 2482 64 0 6 chr12 16892133 16892445 -127390044 + AluY SINE Alu 1 310 -1 278 264 77 65 chr12 16892499 16892654 -127389835 + MIR SINE MIR 60 216 -46 237 230 40 40 chr12 16892923 16892997 -127389492 - L3b LINE CR1 -117 1466 1393 399 313 90 0 chr12 16893730 16893864 -127388625 + L2 LINE L2 3127 3272 0 199 225 169 0 chr12 16893942 16894013 -127388476 + L2 LINE L2 3221 3303 -10 2128 122 0 3 chr12 16895471 16895766 -127386723 + AluSx SINE Alu 3 296 -16 381 336 30 8 chr12 16895945 16896079 -127386410 - L2 LINE L2 -3 3310 3174 2540 68 0 0 chr12 16896560 16896871 -127385618 + AluY SINE Alu 1 311 0 249 284 0 0 chr12 16897114 16897188 -127385301 + (TAA)n Simple_repeat Simple_repeat 3 76 0 239 284 134 31 chr12 16899851 16899978 -127382511 + MIR SINE MIR 106 245 -17 386 284 66 44 chr12 16901697 16901743 -127380746 + L1MC4a LINE L1 7219 7263 -545 2259 113 0 3 chr12 16901743 16902053 -127380436 + AluSc SINE Alu 1 309 0 386 284 66 44 chr12 16902053 16902189 -127380300 + L1MC4a LINE L1 7263 7405 -403 923 249 231 48 chr12 16902195 16902693 -127379796 - MLT1G1 LTR MaLR -6 589 1 390 181 57 0 chr12 16902693 16902798 -127379691 + L1MC4 LINE L1 7481 7591 -451 704 156 239 0 chr12 16902811 16902978 -127379511 + MER3 DNA MER1_type 1 207 -2 278 159 0 0 chr12 16902943 16902987 -127379502 - MER3 DNA MER1_type -125 84 41 * 688 277 59 59 chr12 16902987 16903377 -127379112 + L1MC4 LINE L1 7611 8000 -42 28 0 0 0 chr12 16903413 16903441 -127379048 + AT_rich Low_complexity Low_complexity 1 28 0 13350 149 22 9 chr12 16903942 16907481 -127375008 + L1MA2 LINE L1 2718 6304 0 22 0 0 0 chr12 16908171 16908193 -127374296 + AT_rich Low_complexity Low_complexity 1 22 0 40 21 0 0 chr12 16908256 16908303 -127374186 + AT_rich Low_complexity Low_complexity 1 47 0 2492 68 0 10 chr12 16908570 16908881 -127373608 - AluSg SINE Alu -2 308 1 2148 81 3 62 chr12 16908962 16909285 -127373204 + AluSx SINE Alu 1 304 -8 1171 90 0 30 chr12 16909313 16909480 -127373009 + AluSq SINE Alu 152 313 0 192 179 0 0 chr12 16909793 16909832 -127372657 + (ATG)n Simple_repeat Simple_repeat 1 39 0 201 283 19 0 chr12 16910791 16910844 -127371645 - MIR3 SINE MIR -1 207 154 2303 90 27 0 chr12 16910924 16911225 -127371264 + AluSg SINE Alu 1 309 -1 1543 162 16 4 chr12 16912708 16912955 -127369534 - AluJb SINE Alu -12 300 51 874 95 0 0 chr12 16912964 16913080 -127369409 + FRAM SINE Alu 56 171 -5 21 0 0 0 chr12 16913126 16913147 -127369342 + AT_rich Low_complexity Low_complexity 1 21 0 217 348 36 27 chr12 16913657 16913769 -127368720 - L2 LINE L2 -1 3312 3200 352 164 0 0 chr12 16914441 16914502 -127367987 + Alu SINE Alu 241 301 0 1343 67 0 0 chr12 16914609 16914773 -127367716 + AluY SINE Alu 1 164 -147 229 190 17 69 chr12 16914785 16914843 -127367646 - L2 LINE L2 -544 2770 2716 207 0 0 0 chr12 16915316 16915339 -127367150 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 259 305 133 9 chr12 16915574 16915679 -127366810 - L2 LINE L2 0 3272 3155 22 0 0 0 chr12 16916653 16916675 -127365814 + AT_rich Low_complexity Low_complexity 1 22 0 717 149 19 0 chr12 16917318 16917479 -127365010 + (TA)n Simple_repeat Simple_repeat 1 164 0 258 367 61 0 chr12 16918488 16918586 -127363903 + L2 LINE L2 3163 3266 -6 21 36 0 0 chr12 16918838 16918866 -127363623 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr12 16919941 16919970 -127362519 + AT_rich Low_complexity Low_complexity 1 29 0 2187 88 3 3 chr12 16921737 16922044 -127360445 - AluSp SINE Alu 0 308 2 225 231 31 31 chr12 16923165 16923230 -127359259 + L2 LINE L2 3019 3083 -189 465 50 0 0 chr12 16923249 16923309 -127359180 + (CA)n Simple_repeat Simple_repeat 2 61 0 303 307 58 58 chr12 16923465 16923602 -127358887 + L2 LINE L2 3136 3272 0 314 309 15 52 chr12 16923688 16923824 -127358665 - L2 LINE L2 -5 3267 3137 480 302 73 10 chr12 16924131 16924323 -127358166 + MIR SINE MIR 2 205 -57 2156 133 115 20 chr12 16924426 16924817 -127357672 - MSTC LTR MaLR 0 428 1 4049 136 40 45 chr12 16924861 16924977 -127357512 + Tigger2 DNA MER2_type 1 116 -2602 1492 199 7 30 chr12 16924977 16925274 -127357215 + AluJo SINE Alu 1 290 -22 4049 136 40 45 chr12 16925274 16925898 -127356591 + Tigger2 DNA MER2_type 116 738 -1980 1301 164 50 0 chr12 16925990 16926228 -127356261 + Tigger2 DNA MER2_type 2469 2718 0 189 107 0 0 chr12 16926481 16926509 -127355980 + (A)n Simple_repeat Simple_repeat 1 28 0 22 94 0 0 chr12 16926622 16926686 -127355803 + AT_rich Low_complexity Low_complexity 1 64 0 11562 177 59 14 chr12 16926697 16929438 -127353051 + L1MC3 LINE L1 4914 7779 -6 256 280 0 32 chr12 16930334 16930427 -127352062 + L1ME4a LINE L1 5967 6056 -65 208 171 24 0 chr12 16932211 16932252 -127350237 + (CGAG)n Simple_repeat Simple_repeat 1 42 0 213 380 102 0 chr12 16933219 16933327 -127349162 - L3 LINE CR1 -15 1562 1444 276 254 154 23 chr12 16933355 16933485 -127349004 - MIR SINE MIR -4 258 112 830 319 223 33 chr12 16933567 16934181 -127348308 - L3 LINE CR1 -212 1365 869 3703 177 90 43 chr12 16934181 16935001 -127347488 + MER21B LTR ERV1 1 859 -4 830 319 223 33 chr12 16935001 16935379 -127347110 - L3 LINE CR1 -708 869 185 1790 158 3 0 chr12 16935481 16935766 -127346723 + AluSx SINE Alu 1 286 -26 668 285 83 56 chr12 16937218 16938300 -127344189 + L1MEd LINE L1 688 1817 -4579 23 0 0 0 chr12 16938316 16938339 -127344150 + AT_rich Low_complexity Low_complexity 1 23 0 326 292 200 0 chr12 16938521 16938651 -127343838 - MIR SINE MIR -103 159 4 242 212 117 22 chr12 16938762 16938944 -127343545 + L1MEd LINE L1 2147 2304 -3913 261 312 11 11 chr12 16938990 16939083 -127343406 + L1MEd LINE L1 2429 2521 -3875 180 164 27 14 chr12 16939191 16939264 -127343225 + (TA)n Simple_repeat Simple_repeat 2 75 0 1216 239 42 15 chr12 16939375 16939706 -127342783 - MER58B DNA MER1_type -1 340 1 27 92 0 0 chr12 16939757 16939833 -127342656 + AT_rich Low_complexity Low_complexity 1 76 0 2297 93 3 10 chr12 16939855 16940165 -127342324 + AluSg SINE Alu 2 309 -1 23 0 0 0 chr12 16940202 16940225 -127342264 + AT_rich Low_complexity Low_complexity 1 23 0 284 357 38 0 chr12 16940236 16940421 -127342068 + L1ME3A LINE L1 5760 5951 -219 225 94 0 0 chr12 16941219 16941251 -127341238 + (A)n Simple_repeat Simple_repeat 1 32 0 2034 131 0 0 chr12 16942394 16942856 -127339633 - AluSx SINE Alu 0 462 1 522 230 239 10 chr12 16942921 16943130 -127339359 - MER46C DNA MER2_type -1 337 81 23 0 0 0 chr12 16943752 16943775 -127338714 + AT_rich Low_complexity Low_complexity 1 23 0 2585 45 0 6 chr12 16944104 16944417 -127338072 + AluY SINE Alu 1 311 0 205 347 93 33 chr12 16944638 16944788 -127337701 - L2 LINE L2 0 3272 3114 1035 242 75 57 chr12 16944926 16945131 -127337358 + L2 LINE L2 2887 3104 -209 228 86 0 0 chr12 16945131 16945166 -127337323 + (CA)n Simple_repeat Simple_repeat 1 35 0 1035 242 75 57 chr12 16945166 16945332 -127337157 + L2 LINE L2 3104 3265 -48 229 306 76 14 chr12 16945340 16945484 -127337005 - L2 LINE L2 -234 3038 2886 186 191 0 0 chr12 16945537 16945579 -127336910 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 2325 97 0 0 chr12 16945609 16945907 -127336582 + AluY SINE Alu 1 298 -13 186 284 63 21 chr12 16945987 16946082 -127336407 - L2 LINE L2 -372 2941 2843 1479 164 62 60 chr12 16946294 16946630 -127335859 - MER1B DNA MER1_type 0 337 1 2895 162 48 17 chr12 16947477 16947940 -127334549 + L1M3f LINE L1 1244 1720 -4845 2381 82 0 35 chr12 16947940 16948256 -127334233 + AluY SINE Alu 1 305 -6 2895 162 48 17 chr12 16948256 16948398 -127334091 + L1M3f LINE L1 1720 1856 -4709 483 175 0 0 chr12 16948386 16948510 -127333979 + L1M3f LINE L1 2401 2500 -4065 * 4596 182 22 10 chr12 16948531 16949375 -127333114 + L1M3f LINE L1 3826 4687 -2878 2209 119 0 3 chr12 16949375 16949685 -127332804 + AluSc SINE Alu 1 309 0 4596 182 22 10 chr12 16949685 16949872 -127332617 + L1M3f LINE L1 4687 4870 -2695 2221 118 0 3 chr12 16950547 16950887 -127331602 - AluSp SINE Alu 0 313 1 963 174 6 0 chr12 16950887 16951048 -127331441 - FRAM SINE Alu -13 163 2 817 264 32 0 chr12 16951070 16951281 -127331208 - MIR SINE MIR -34 228 13 245 306 121 12 chr12 16951316 16951489 -127331000 - L2 LINE L2 -1430 1884 1693 235 263 118 0 chr12 16951540 16951616 -127330873 + MIR3 SINE MIR 123 207 -1 2656 45 0 0 chr12 16953392 16953701 -127328788 - AluY SINE Alu -2 309 1 262 243 95 27 chr12 16955576 16955650 -127326839 + L2 LINE L2 3188 3266 -6 * 434 236 62 67 chr12 16955645 16955840 -127326649 - MIR SINE MIR -3 259 66 186 103 0 0 chr12 16956585 16956614 -127325875 + (CA)n Simple_repeat Simple_repeat 2 30 0 1640 158 14 21 chr12 16956678 16956969 -127325520 - AluJo SINE Alu -17 295 7 1819 154 14 0 chr12 16957003 16957322 -127325167 + AluSx SINE Alu 1 323 0 221 240 0 0 chr12 16957335 16957385 -127325104 - L2 LINE L2 0 3313 3264 506 267 33 11 chr12 16957651 16957831 -127324658 - MLT1L LTR MaLR -4 611 428 1664 188 28 0 chr12 16958338 16958625 -127323864 - AluJb SINE Alu -17 295 1 453 82 55 27 chr12 16959076 16959186 -127323303 + CT-rich Low_complexity Low_complexity 1 113 0 1416 99 0 0 chr12 16959190 16959371 -127323118 - AluSg/x SINE Alu -9 300 120 1323 180 36 62 chr12 16959375 16959680 -127322809 - AluJb SINE Alu -4 298 2 425 220 6 143 chr12 16959707 16959773 -127322716 - MLT1B LTR MaLR -3 592 561 4576 103 1 1 chr12 16959773 16960423 -127322066 + L1PA13 LINE L1 5496 6145 -18 425 220 6 143 chr12 16960423 16960524 -127321965 - MLT1B LTR MaLR -34 561 448 632 250 23 17 chr12 16960571 16960761 -127321728 - MLT1B LTR MaLR -11 379 174 731 291 25 18 chr12 16960805 16961062 -127321427 - MLT1G1 LTR MaLR -285 310 7 26 0 0 0 chr12 16961198 16961224 -127321265 + AT_rich Low_complexity Low_complexity 1 26 0 226 349 81 33 chr12 16962239 16962657 -127319832 + L2 LINE L2 2222 2740 -574 183 231 26 13 chr12 16962831 16962909 -127319580 + (TA)n Simple_repeat Simple_repeat 2 80 0 2234 117 3 3 chr12 16963172 16963470 -127319019 - AluSx SINE Alu -14 298 1 605 285 74 37 chr12 16963988 16964230 -127318259 - MIR SINE MIR 0 262 12 273 314 116 35 chr12 16965228 16965400 -127317089 + L2 LINE L2 2897 3082 -190 2230 81 7 3 chr12 16965433 16965749 -127316740 - AluSq SINE Alu 0 317 1 249 253 67 0 chr12 16965802 16965877 -127316612 + L2 LINE L2 3234 3313 0 1608 180 18 0 chr12 16966659 16966942 -127315547 - AluJb SINE Alu -24 288 1 30 0 0 0 chr12 16967329 16967359 -127315130 + AT_rich Low_complexity Low_complexity 1 30 0 3232 165 41 12 chr12 16967384 16968038 -127314451 + L1MB8 LINE L1 5374 6046 -132 1540 130 4 19 chr12 16969033 16969302 -127313187 + THE1B LTR MaLR 1 265 -99 1900 190 67 30 chr12 16969422 16969989 -127312500 + L1MD2 LINE L1 5670 6224 -18 1444 210 4 11 chr12 16970798 16971079 -127311410 + AluJo SINE Alu 1 279 -33 833 208 51 0 chr12 16971262 16971478 -127311011 - L1MD3 LINE L1 -21 7974 7748 325 239 26 9 chr12 16971913 16972026 -127310463 + L1MB8 LINE L1 6050 6164 -14 21 36 0 0 chr12 16972037 16972065 -127310424 + AT_rich Low_complexity Low_complexity 1 28 0 1929 124 40 0 chr12 16972140 16972415 -127310074 + AluSx SINE Alu 1 286 -26 26 30 0 0 chr12 16972418 16972451 -127310038 + AT_rich Low_complexity Low_complexity 1 33 0 670 196 0 0 chr12 16972612 16972724 -127309765 - FLAM_A SINE Alu -22 120 9 497 312 40 21 chr12 16972931 16973360 -127309129 - L1ME LINE L1 -353 5809 5373 242 291 27 7 chr12 16973399 16973547 -127308942 - L1ME LINE L1 -860 5286 5136 382 322 154 10 chr12 16973583 16973875 -127308614 - L1ME LINE L1 -1079 5067 4734 1740 234 40 38 chr12 16974697 16975198 -127307291 + MLT1D LTR MaLR 4 505 0 1995 148 0 10 chr12 16975228 16975539 -127306950 - AluJb SINE Alu -4 308 1 3433 136 0 19 chr12 16975664 16976201 -127306288 - MER1A DNA MER1_type 0 527 1 238 160 320 0 chr12 16976222 16976297 -127306192 + MIR SINE MIR 32 130 -78 345 125 0 0 chr12 16976313 16976369 -127306120 + (CA)n Simple_repeat Simple_repeat 2 57 0 24 32 0 0 chr12 16978737 16978768 -127303721 + AT_rich Low_complexity Low_complexity 1 31 0 1421 223 63 18 chr12 16980238 16980637 -127301852 + LTR40c LTR ERVL 43 459 -6 183 227 0 23 chr12 16980637 16980681 -127301808 + L2 LINE L2 3223 3265 -48 2348 96 0 0 chr12 16981670 16981971 -127300518 - AluSc SINE Alu -8 301 1 1976 173 18 12 chr12 16982103 16982438 -127300051 + MER1B DNA MER1_type 1 337 0 2185 104 7 19 chr12 16982805 16983112 -127299377 - AluSg SINE Alu -7 303 1 305 283 43 65 chr12 16983130 16983268 -127299221 + L2 LINE L2 3138 3272 0 2338 125 97 5 chr12 16983444 16983836 -127298653 - MSTA LTR MaLR 0 428 1 195 282 71 59 chr12 16983867 16983952 -127298537 - L2 LINE L2 -46 3226 3141 532 349 35 6 chr12 16985742 16985914 -127296575 - MER91A DNA MER1_type -1 195 19 1734 166 55 0 chr12 16987194 16987484 -127295005 - AluJb SINE Alu -6 306 1 228 329 101 74 chr12 16987630 16987779 -127294710 + L2 LINE L2 3093 3245 -27 274 200 0 0 chr12 16987804 16987849 -127294640 + MLT1E3 LTR MaLR 450 494 -130 2491 216 72 20 chr12 16987849 16988436 -127294053 + MLT1E3 LTR MaLR 1 617 -7 1637 177 13 35 chr12 16989166 16989477 -127293012 + AluJo SINE Alu 1 304 -8 180 0 0 0 chr12 16990060 16990080 -127292409 + (A)n Simple_repeat Simple_repeat 1 20 0 2221 91 6 28 chr12 16990086 16990405 -127292084 + AluSx SINE Alu 1 312 0 254 396 20 49 chr12 16991308 16991715 -127290774 - L2 LINE L2 -466 2848 2454 386 303 42 71 chr12 16992060 16992370 -127290119 + LTR16B LTR ERVL 162 462 -2 27 49 0 0 chr12 16992460 16992501 -127289988 + AT_rich Low_complexity Low_complexity 1 41 0 2226 114 3 0 chr12 16992543 16992841 -127289648 - AluSg SINE Alu -11 299 1 235 370 60 20 chr12 16994840 16995040 -127287449 + L2 LINE L2 1998 2205 -1109 1098 279 108 11 chr12 16995242 16995611 -127286878 - MLT1G1 LTR MaLR 0 595 191 2157 109 0 17 chr12 16995825 16996127 -127286362 - AluSc SINE Alu -12 297 1 196 106 0 64 chr12 16996232 16996279 -127286210 + (TATG)n Simple_repeat Simple_repeat 4 47 0 2037 121 0 0 chr12 16997200 16997508 -127284981 + AluSx SINE Alu 2 309 0 1990 117 10 3 chr12 16997617 16997907 -127284582 + AluSx SINE Alu 1 292 -20 199 268 113 10 chr12 16998068 16998165 -127284324 + MIR SINE MIR 156 262 0 240 230 26 158 chr12 16998303 16998455 -127284034 + L2 LINE L2 3180 3311 -2 * 273 334 89 64 chr12 16998452 16998766 -127283723 + L2 LINE L2 2988 3309 -4 1934 137 10 7 chr12 16999361 16999653 -127282836 + AluJb SINE Alu 5 297 -15 1131 253 245 19 chr12 16999902 17000148 -127282341 + L2 LINE L2 2433 2622 -691 4382 91 11 13 chr12 17000148 17000784 -127281705 - MER41B LTR ERV1 0 635 1 1131 253 245 19 chr12 17000784 17001228 -127281261 + L2 LINE L2 2622 3301 -12 21 0 0 0 chr12 17003070 17003091 -127279398 + AT_rich Low_complexity Low_complexity 1 21 0 1162 187 11 68 chr12 17003287 17003565 -127278924 - AluJb SINE Alu -6 306 45 243 192 72 112 chr12 17003743 17003820 -127278669 - L1ME4a LINE L1 -43 6078 6006 1962 92 70 4 chr12 17003820 17004091 -127278398 - AluSc SINE Alu -20 289 1 243 192 72 112 chr12 17004091 17004138 -127278351 - L1ME4a LINE L1 -115 6006 5959 582 309 86 0 chr12 17004595 17004757 -127277732 + MER5B DNA MER1_type 2 177 -1 373 343 130 10 chr12 17004757 17004942 -127277547 - L2 LINE L2 -650 2664 2455 647 262 108 38 chr12 17005119 17005344 -127277145 + LTR50 LTR ERVL 15 223 -572 210 37 0 0 chr12 17005344 17005371 -127277118 + (TTG)n Simple_repeat Simple_repeat 2 28 0 647 262 108 38 chr12 17005371 17005791 -127276698 + LTR50 LTR ERVL 223 786 -9 37 39 0 0 chr12 17007071 17007122 -127275367 + AT_rich Low_complexity Low_complexity 1 51 0 605 284 8 30 chr12 17007533 17007769 -127274720 + LTR16B LTR ERVL 234 464 0 1557 259 56 26 chr12 17007771 17008573 -127273916 - L1ME LINE L1 -5168 902 77 2304 106 0 0 chr12 17008838 17009140 -127273349 + AluSx SINE Alu 9 310 -2 867 304 199 18 chr12 17009218 17009894 -127272595 + L2 LINE L2 2254 3039 -233 240 185 80 80 chr12 17009934 17009978 -127272511 + L1ME LINE L1 5314 5357 -813 1524 158 124 75 chr12 17009978 17010447 -127272042 - LTR22B LTR ERVK 0 492 1 240 185 80 80 chr12 17010447 17010564 -127271925 + L1ME LINE L1 5356 5475 -695 561 206 0 0 chr12 17010855 17010957 -127271532 + FLAM_A SINE Alu 31 132 -10 1466 236 67 76 chr12 17011075 17011600 -127270889 - L1MC4 LINE L1 -3 8039 7511 2130 142 3 7 chr12 17011600 17011909 -127270580 + AluJb SINE Alu 1 308 -4 1466 236 67 76 chr12 17011909 17012066 -127270423 - L1MC4 LINE L1 -531 7511 7362 1726 234 19 28 chr12 17012066 17012532 -127269957 - LTR40b LTR ERVL 0 462 1 1466 236 67 76 chr12 17012532 17012584 -127269905 - L1MC4 LINE L1 -680 7362 7311 22 0 0 0 chr12 17012921 17012943 -127269546 + AT_rich Low_complexity Low_complexity 1 22 0 619 276 62 60 chr12 17013072 17013496 -127268993 + LTR35 LTR ERV1 133 547 -9 2438 202 38 35 chr12 17013873 17014032 -127268457 + L1MC/D LINE L1 4697 4854 -1505 2281 85 0 19 chr12 17014032 17014339 -127268150 - AluY SINE Alu -10 301 1 2438 202 38 35 chr12 17014339 17015067 -127267422 + L1MC/D LINE L1 4854 5589 -770 1615 132 85 34 chr12 17015067 17015362 -127267127 + AluSq SINE Alu 1 310 -3 2438 202 38 35 chr12 17015362 17015551 -127266938 + L1MC/D LINE L1 5589 5776 -583 887 173 48 43 chr12 17015568 17015683 -127266806 - L1M3 LINE L1 -671 5500 5387 1721 148 59 7 chr12 17015683 17015973 -127266516 - AluJo SINE Alu -7 305 1 887 173 48 43 chr12 17015973 17016285 -127266204 - L1M3 LINE L1 -784 5387 5095 596 221 7 7 chr12 17016287 17016436 -127266053 - L1M3 LINE L1 -1205 4941 4793 4052 213 24 32 chr12 17016440 17017173 -127265316 - L1M3 LINE L1 -2105 4041 3303 2444 77 0 10 chr12 17017173 17017484 -127265005 - AluY SINE Alu -3 308 1 4052 213 24 32 chr12 17017484 17017926 -127264563 - L1M3 LINE L1 -2843 3303 2875 2241 110 0 0 chr12 17017926 17018218 -127264271 + AluSg SINE Alu 1 292 -18 4052 213 24 32 chr12 17018218 17018301 -127264188 - L1M3 LINE L1 -3271 2875 2793 705 204 40 62 chr12 17018307 17018551 -127263938 - MLT1E1 LTR MaLR -355 238 5 628 285 99 7 chr12 17018838 17019122 -127263367 - L1ME3A LINE L1 -296 5874 5565 1158 209 0 5 chr12 17019123 17019334 -127263155 + AluJb SINE Alu 87 296 -16 259 312 91 0 chr12 17019358 17019512 -127262977 - L1P5 LINE L1 -635 5521 5354 612 318 86 3 chr12 17019519 17019843 -127262646 - L1ME3A LINE L1 -865 5281 4931 2324 97 3 0 chr12 17019915 17020213 -127262276 - AluSx SINE Alu -13 299 1 314 367 42 5 chr12 17020228 17020443 -127262046 - L1ME3A LINE L1 -1322 4824 4602 1295 260 56 14 chr12 17020485 17021000 -127261489 + L1PB1 LINE L1 15 551 -6312 3887 126 102 82 chr12 17021080 17022424 -127260065 + pTR5 LTR ERV1 741 2438 0 6267 160 32 4 chr12 17022426 17024127 -127258362 + L1PB1 LINE L1 663 2587 -4276 680 187 0 0 chr12 17024126 17024260 -127258229 + L1PB1 LINE L1 4567 4700 -2162 * 5745 106 18 7 chr12 17024267 17025302 -127257187 + L1PB1 LINE L1 5820 6865 -2 339 245 20 66 chr12 17025337 17025391 -127257098 - L1ME3A LINE L1 -1529 4617 4562 1729 161 87 22 chr12 17025391 17025757 -127256732 - MLT1B LTR MaLR 0 390 1 339 245 20 66 chr12 17025757 17025853 -127256636 - L1ME3A LINE L1 -1584 4562 4474 522 283 29 0 chr12 17025925 17026063 -127256426 + LTR33 LTR ERVL 30 171 -350 379 231 0 10 chr12 17026253 17026357 -127256132 + LTR33 LTR ERVL 404 506 -15 254 147 84 11 chr12 17026373 17026468 -127256021 - L1ME3A LINE L1 -1722 4424 4323 207 0 0 0 chr12 17026484 17026507 -127255982 + (CAA)n Simple_repeat Simple_repeat 2 24 0 304 197 15 0 chr12 17026519 17026585 -127255904 + FAM SINE Alu 113 179 0 1681 175 3 29 chr12 17026625 17026939 -127255550 - AluJo SINE Alu -6 306 1 457 276 132 4 chr12 17027026 17027276 -127255213 - L1ME3A LINE L1 -2014 4132 3851 235 333 72 18 chr12 17027530 17027641 -127254848 - L2 LINE L2 0 3272 3156 297 217 152 11 chr12 17027881 17027973 -127254516 - L2 LINE L2 -17 3296 3192 29 28 0 0 chr12 17028100 17028136 -127254353 + AT_rich Low_complexity Low_complexity 1 36 0 941 149 6 12 chr12 17028438 17028599 -127253890 - AluJb SINE Alu -14 298 139 203 114 57 0 chr12 17029096 17029131 -127253358 + CT-rich Low_complexity Low_complexity 3 39 0 202 281 78 0 chr12 17029858 17029922 -127252567 - MIR SINE MIR -111 151 83 209 294 73 15 chr12 17030526 17030594 -127251895 - MER5A DNA MER1_type -85 104 33 200 59 29 0 chr12 17030721 17030755 -127251734 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 274 233 81 23 chr12 17031050 17031136 -127251353 - MER5B DNA MER1_type -1 177 87 40 67 0 0 chr12 17031143 17031218 -127251271 + AT_rich Low_complexity Low_complexity 1 75 0 420 246 105 9 chr12 17031219 17031333 -127251156 - FLAM_A SINE Alu -7 126 2 191 159 0 45 chr12 17031335 17031379 -127251110 - MER5B DNA MER1_type -77 101 60 2351 104 0 0 chr12 17031816 17032124 -127250365 - AluSx SINE Alu -4 308 1 370 251 299 24 chr12 17032339 17032506 -127249983 + MIR SINE MIR 13 225 -37 1452 180 33 0 chr12 17032832 17033076 -127249413 - AluJb SINE Alu -15 297 46 293 306 14 0 chr12 17033157 17033229 -127249260 + L2 LINE L2 3190 3262 -10 559 178 75 0 chr12 17034370 17034477 -127248012 + FLAM_A SINE Alu 12 126 -16 189 383 101 28 chr12 17034791 17035008 -127247481 - L2 LINE L2 -228 3044 2812 25 0 0 0 chr12 17035509 17035534 -127246955 + AT_rich Low_complexity Low_complexity 1 25 0 203 171 0 0 chr12 17035840 17035875 -127246614 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 27 0 0 0 chr12 17036122 17036149 -127246340 + AT_rich Low_complexity Low_complexity 1 27 0 2471 82 0 16 chr12 17037413 17037728 -127244761 + AluSq SINE Alu 1 310 -3 392 282 46 72 chr12 17038044 17038296 -127244193 - L1ME4a LINE L1 -266 5855 5611 2167 88 27 10 chr12 17038296 17038592 -127243897 + AluSq SINE Alu 1 301 -12 392 282 46 72 chr12 17038592 17038644 -127243845 - L1ME4a LINE L1 -510 5611 5559 26 0 0 0 chr12 17039025 17039051 -127243438 + AT_rich Low_complexity Low_complexity 1 26 0 301 188 62 0 chr12 17039633 17039697 -127242792 - MIR SINE MIR -106 156 89 200 224 49 21 chr12 17040004 17040147 -127242342 + (TTATA)n Simple_repeat Simple_repeat 1 147 0 261 196 27 65 chr12 17040164 17040348 -127242141 + (TTATA)n Simple_repeat Simple_repeat 1 177 0 1961 137 10 0 chr12 17040813 17041106 -127241383 + AluSx SINE Alu 1 296 -16 1291 181 8 13 chr12 17041242 17041479 -127241010 + MER46A DNA MER2_type 1 236 0 1533 169 68 20 chr12 17042230 17042525 -127239964 + AluJb SINE Alu 1 309 -3 2073 130 0 35 chr12 17042576 17042892 -127239597 + AluSx SINE Alu 1 305 -7 290 304 0 51 chr12 17043354 17043492 -127238997 - L1ME LINE L1 -448 5673 5543 24 0 0 0 chr12 17044078 17044102 -127238387 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr12 17045388 17045411 -127237078 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr12 17046781 17046805 -127235684 + AT_rich Low_complexity Low_complexity 1 24 0 2192 89 31 0 chr12 17046885 17047176 -127235313 + AluSg SINE Alu 1 300 -10 247 331 92 0 chr12 17047937 17048067 -127234422 - L2 LINE L2 -213 3059 2918 254 319 91 61 chr12 17048172 17048289 -127234200 - L2 LINE L2 -491 2823 2711 1725 114 0 0 chr12 17048289 17048516 -127233973 + AluSg/x SINE Alu 76 302 -10 254 319 91 61 chr12 17048516 17048616 -127233873 - L2 LINE L2 -603 2711 2615 2208 100 10 0 chr12 17048616 17048907 -127233582 - AluSg SINE Alu -16 294 1 254 319 91 61 chr12 17048907 17049030 -127233459 - L2 LINE L2 -699 2615 2472 207 0 0 0 chr12 17049521 17049544 -127232945 + (T)n Simple_repeat Simple_repeat 1 23 0 394 234 160 62 chr12 17050362 17050606 -127231883 - HAL1b LINE L1 -2 1346 1079 2437 179 42 38 chr12 17051175 17051678 -127230811 - MLT1D LTR MaLR 0 505 1 692 308 224 28 chr12 17051728 17051842 -127230647 + L2 LINE L2 1923 2013 -1300 2417 81 0 3 chr12 17051842 17052138 -127230351 - AluSc SINE Alu -13 296 2 692 308 224 28 chr12 17052138 17052945 -127229544 + L2 LINE L2 2013 3017 -296 314 289 66 16 chr12 17054227 17054348 -127228141 - MIR SINE MIR -45 217 91 284 276 95 0 chr12 17055150 17055255 -127227234 - L2 LINE L2 0 3313 3199 372 325 65 6 chr12 17055562 17055731 -127226758 - MER5A DNA MER1_type -2 187 9 1802 194 149 8 chr12 17056150 17056654 -127225835 - MER90 LTR ERV1 0 575 1 284 321 161 12 chr12 17056843 17057011 -127225478 - MIR SINE MIR -12 250 58 573 247 118 11 chr12 17057353 17057531 -127224958 - MIR3 SINE MIR -3 205 9 3392 16 0 6 chr12 17058652 17059017 -127223472 - SVA Other Other 0 1386 1024 612 252 57 10 chr12 17059108 17059301 -127223188 + MIR SINE MIR 43 246 -16 233 227 0 0 chr12 17060166 17060232 -127222257 - L1ME4a LINE L1 -4 6117 6052 411 231 0 0 chr12 17060435 17060513 -127221976 + MER5A DNA MER1_type 112 189 0 460 227 31 70 chr12 17060627 17060734 -127221755 + L2 LINE L2 3191 3294 -19 2017 144 6 28 chr12 17060734 17061053 -127221436 + AluSx SINE Alu 1 312 0 460 227 31 70 chr12 17061053 17061073 -127221416 + L2 LINE L2 3294 3313 0 186 229 82 0 chr12 17061286 17061347 -127221142 + MIR3 SINE MIR 131 196 -12 1558 111 0 9 chr12 17061413 17061630 -127220859 - AluSg/x SINE Alu -14 296 82 217 277 119 30 chr12 17061654 17061755 -127220734 - L2 LINE L2 -3 3310 3201 231 36 0 0 chr12 17062077 17062105 -127220384 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 704 194 0 0 chr12 17062106 17062230 -127220259 - AluSq/x SINE Alu -189 124 1 260 221 29 29 chr12 17062294 17062362 -127220127 - L2 LINE L2 -21 3292 3225 * 645 262 69 35 chr12 17062360 17062562 -127219927 - MIR SINE MIR -20 242 34 2408 98 0 0 chr12 17063078 17063385 -127219104 - AluSx SINE Alu -4 308 2 605 198 9 9 chr12 17063430 17063546 -127218943 - FLAM_A SINE Alu -26 116 1 489 356 16 11 chr12 17064113 17064304 -127218185 - MIR SINE MIR -51 211 20 394 146 11 56 chr12 17064314 17064403 -127218086 - Charlie3 DNA MER1_type -8 2702 2618 1143 238 99 3 chr12 17064403 17064735 -127217754 - L1MC4 LINE L1 -1153 6889 6526 27 49 0 0 chr12 17065180 17065221 -127217268 + AT_rich Low_complexity Low_complexity 1 41 0 244 227 61 129 chr12 17065227 17065359 -127217130 - L2 LINE L2 -9 3263 3141 21 36 0 0 chr12 17065885 17065913 -127216576 + AT_rich Low_complexity Low_complexity 1 28 0 291 28 0 0 chr12 17066596 17066606 -127215883 + (TG)n Simple_repeat Simple_repeat 1 46 0 291 28 0 0 chr12 17066606 17066642 -127215847 + (TG)n Simple_repeat Simple_repeat 1 36 0 425 303 84 0 chr12 17066885 17067027 -127215462 - MIR3 SINE MIR -11 197 44 274 200 0 33 chr12 17067101 17067161 -127215328 - MER5A DNA MER1_type -16 173 116 2126 86 3 31 chr12 17067188 17067480 -127215009 + AluSc SINE Alu 1 284 -25 204 322 0 35 chr12 17067482 17067569 -127214920 - MER5B DNA MER1_type -70 108 25 2068 119 7 14 chr12 17068275 17068561 -127213928 + AluSq SINE Alu 1 284 -29 27 0 0 0 chr12 17068562 17068589 -127213900 + AT_rich Low_complexity Low_complexity 1 27 0 208 342 61 26 chr12 17068696 17068810 -127213679 - L2 LINE L2 -2 3311 3194 952 138 7 0 chr12 17069484 17069636 -127212853 + L1MC1 LINE L1 6166 6318 -15 2824 10 0 0 chr12 17069646 17069957 -127212532 - AluYa5 SINE Alu 0 311 1 1137 224 126 0 chr12 17070781 17071036 -127211453 + AluJo SINE Alu 1 287 -25 480 258 93 27 chr12 17071137 17071343 -127211146 + MIR SINE MIR 37 262 0 2281 87 23 7 chr12 17072458 17072758 -127209731 - AluSx SINE Alu -7 305 1 739 199 0 0 chr12 17072830 17072961 -127209528 - FLAM_A SINE Alu -2 131 1 2591 35 0 3 chr12 17073090 17073401 -127209088 + AluY SINE Alu 1 310 -1 622 232 67 0 chr12 17073484 17073648 -127208841 + MER105 DNA DNA 30 204 0 315 302 122 0 chr12 17073815 17073954 -127208535 - MIR SINE MIR 0 262 107 244 310 30 50 chr12 17074259 17074359 -127208130 - MIR SINE MIR -149 113 16 1383 154 53 0 chr12 17074644 17074910 -127207579 - L1MA7 LINE L1 -5 6286 6007 321 265 43 9 chr12 17076570 17076755 -127205734 + MIR SINE MIR 20 247 -15 1835 144 58 120 chr12 17078254 17078739 -127203750 + MSTB2 LTR MaLR 1 455 -2 1744 166 39 7 chr12 17079004 17079288 -127203201 + AluJb SINE Alu 1 293 -19 3319 145 46 6 chr12 17079331 17079957 -127202532 - L1MA8 LINE L1 -136 6155 5505 302 240 0 21 chr12 17079962 17080058 -127202431 - HAL1 LINE L1 -1244 1263 1170 212 369 107 7 chr12 17080301 17080450 -127202039 + L2 LINE L2 2891 3054 -218 193 200 29 0 chr12 17080466 17080501 -127201988 - MIR SINE MIR -132 76 41 2318 80 7 10 chr12 17080940 17081241 -127201248 + AluY SINE Alu 1 300 -11 2137 139 0 0 chr12 17081840 17082135 -127200354 + AluJb SINE Alu 1 295 -17 2335 229 43 4 chr12 17082363 17082875 -127199614 - MLT1F LTR MaLR -7 535 4 433 300 53 79 chr12 17082943 17083360 -127199129 - L1MC4 LINE L1 -16 8026 7621 347 299 37 13 chr12 17083404 17083476 -127199013 - L1MC5 LINE L1 -525 7495 7426 912 114 0 0 chr12 17083476 17083616 -127198873 + (TCCTG)n Simple_repeat Simple_repeat 4 143 0 1532 193 65 4 chr12 17083616 17083891 -127198598 - AluJo SINE Alu -20 292 1 347 299 37 13 chr12 17083891 17084249 -127198240 - L1MC5 LINE L1 -593 7427 7167 240 313 35 61 chr12 17084516 17084631 -127197858 - L2 LINE L2 -2 3270 3159 27 29 0 0 chr12 17084907 17084941 -127197548 + AT_rich Low_complexity Low_complexity 1 34 0 1321 188 58 26 chr12 17085180 17085557 -127196932 + MER114 LTR ERV 1 389 -259 345 189 87 87 chr12 17085557 17085684 -127196805 + MLT1H1 LTR MaLR 1 127 -415 439 232 85 31 chr12 17085813 17086044 -127196445 + MLT1H1 LTR MaLR 290 537 -12 468 242 90 22 chr12 17086059 17086282 -127196207 + MER114 LTR ERV 411 648 0 2128 114 0 7 chr12 17086965 17087286 -127195203 - AluSc SINE Alu 0 309 1 198 71 0 0 chr12 17087511 17087539 -127194950 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 5632 134 19 6 chr12 17088015 17089250 -127193239 - L1PB2 LINE L1 0 6151 4899 228 224 0 17 chr12 17089537 17089595 -127192894 + MER94 DNA DNA 78 134 0 357 275 50 17 chr12 17089999 17090119 -127192370 + L2 LINE L2 2640 2763 -551 341 266 53 35 chr12 17090162 17090331 -127192158 + MER112 DNA MER1_type 7 178 -82 315 0 0 0 chr12 17090341 17090376 -127192113 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 39433 60 7 1 chr12 17090376 17096473 -127186016 - L1PA5 LINE L1 -12 6142 11 262 300 22 0 chr12 17096483 17096573 -127185916 + MER112 DNA MER1_type 160 251 -9 527 314 174 23 chr12 17096578 17096706 -127185783 + L2 LINE L2 2804 2911 -402 4284 74 4 2 chr12 17096706 17097259 -127185230 - MER41A LTR ERV1 0 554 1 527 314 174 23 chr12 17097259 17097573 -127184916 + L2 LINE L2 2911 3313 0 465 317 34 10 chr12 17097656 17097864 -127184625 - MER115 DNA AcHobo -440 253 41 387 283 92 72 chr12 17098241 17098532 -127183957 - L1ME4a LINE L1 -4 6117 5802 2322 103 3 0 chr12 17098532 17098834 -127183655 - AluSg SINE Alu -7 303 1 387 283 92 72 chr12 17098834 17098997 -127183492 - L1ME4a LINE L1 -319 5802 5644 1232 178 43 10 chr12 17099111 17099415 -127183074 - MER33 DNA MER1_type -9 315 2 675 169 64 87 chr12 17099579 17099751 -127182738 - MER20 DNA MER1_type 0 219 52 187 378 88 42 chr12 17100060 17100277 -127182212 + L3b LINE CR1 1298 1524 -59 187 352 84 14 chr12 17100323 17100465 -127182024 + L3b LINE CR1 1185 1336 -247 504 295 80 40 chr12 17101025 17101327 -127181162 - L2 LINE L2 -155 3117 2804 2131 113 10 0 chr12 17101653 17101946 -127180543 + AluSx SINE Alu 1 296 -16 283 128 0 0 chr12 17103319 17103366 -127179123 - MADE1 DNA Mariner -1 79 33 367 338 83 6 chr12 17105499 17105656 -127176833 - MIR3 SINE MIR -6 202 34 320 254 91 9 chr12 17106821 17106931 -127175558 - L1MC4 LINE L1 -1336 6706 6588 2320 107 3 0 chr12 17106991 17107299 -127175190 + AluSx SINE Alu 1 309 -3 302 304 107 64 chr12 17107373 17107785 -127174704 - L2 LINE L2 -216 3056 2629 600 179 81 8 chr12 17108028 17108151 -127174338 + FLAM_C SINE Alu 1 132 -11 2158 132 0 7 chr12 17108376 17108679 -127173810 - AluSx SINE Alu -11 301 1 189 250 0 0 chr12 17109377 17109437 -127173052 + CT-rich Low_complexity Low_complexity 3 62 0 611 223 141 92 chr12 17110625 17110952 -127171537 - MLT1J LTR MaLR -76 435 93 1537 68 14 27 chr12 17111931 17112152 -127170337 - L1PA10 LINE L1 -11 6157 5940 331 321 130 36 chr12 17112276 17112715 -127169774 + L2 LINE L2 1288 1767 -1547 374 182 0 0 chr12 17112717 17112793 -127169696 + AluSx SINE Alu 1 57 -244 1645 151 0 0 chr12 17112877 17113116 -127169373 + AluSx SINE Alu 61 299 -13 303 344 77 18 chr12 17113168 17113389 -127169100 + L2 LINE L2 1896 2129 -1185 1487 124 0 113 chr12 17113703 17113986 -127168503 + AluJb SINE Alu 1 251 -61 216 0 0 0 chr12 17114056 17114080 -127168409 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr12 17114120 17114149 -127168340 + AT_rich Low_complexity Low_complexity 1 29 0 483 310 121 6 chr12 17115202 17115376 -127167113 + MIR SINE MIR 13 206 -56 321 333 47 29 chr12 17115514 17115685 -127166804 + MIR3 SINE MIR 34 207 -1 24 0 0 0 chr12 17117162 17117186 -127165303 + AT_rich Low_complexity Low_complexity 1 24 0 2424 94 0 3 chr12 17118144 17118453 -127164036 - AluSq SINE Alu -5 308 1 636 246 47 19 chr12 17120203 17120459 -127162030 + L1ME4a LINE L1 5669 5931 -190 4511 184 67 92 chr12 17120559 17121675 -127160814 - L1MC4 LINE L1 -1 8041 6977 4698 109 4 24 chr12 17121675 17122379 -127160110 - LTR8 LTR ERV1 0 691 2 4511 184 67 92 chr12 17122379 17122884 -127159605 - L1MC4 LINE L1 -1065 6977 6461 276 264 88 11 chr12 17123438 17123529 -127158960 - MIR SINE MIR -74 134 37 206 388 12 0 chr12 17124005 17124085 -127158404 + MIR SINE MIR 43 123 -85 2263 111 0 16 chr12 17124086 17124393 -127158096 - AluSq SINE Alu -11 302 1 269 269 194 32 chr12 17125070 17125256 -127157233 - MIR SINE MIR -17 245 30 650 321 57 24 chr12 17125481 17125727 -127156762 - MIR SINE MIR -6 256 3 551 295 133 21 chr12 17126767 17127001 -127155488 - MIR SINE MIR -2 260 1 2372 87 0 0 chr12 17127702 17128011 -127154478 + AluY SINE Alu 1 309 -2 632 354 91 20 chr12 17129547 17130159 -127152330 + L2 LINE L2 2397 3054 -218 264 316 20 31 chr12 17131205 17131303 -127151186 - MIR SINE MIR -153 109 13 258 286 45 13 chr12 17131608 17131626 -127150863 - L1MA10 LINE L1 0 6334 6317 599 208 56 81 chr12 17131626 17131910 -127150579 - L1ME2 LINE L1 -9 6155 5879 2076 244 78 46 chr12 17131981 17133866 -127148623 - L1MEc LINE L1 -2758 3457 1632 2369 114 0 0 chr12 17133866 17134172 -127148317 - AluSx SINE Alu -6 306 1 2076 244 78 46 chr12 17134172 17134361 -127148128 - L1MEc LINE L1 -4583 1632 1450 7412 171 151 39 chr12 17134361 17135939 -127146550 - MER52A LTR ERV1 0 1755 1 2076 244 78 46 chr12 17135939 17136185 -127146304 - L1MEc LINE L1 -4765 1450 880 180 77 0 0 chr12 17137056 17137082 -127145407 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 6181 95 13 0 chr12 17137085 17138070 -127144419 - L1PA13 LINE L1 -1 6162 5175 422 275 28 0 chr12 17138291 17138400 -127144089 - MIR SINE MIR -1 261 150 27 29 0 0 chr12 17139930 17139964 -127142525 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr12 17140116 17140142 -127142347 + AT_rich Low_complexity Low_complexity 1 26 0 185 333 0 0 chr12 17140776 17140821 -127141668 + L2 LINE L2 3218 3262 -10 2487 51 0 0 chr12 17141096 17141388 -127141101 - AluY SINE Alu -19 292 1 415 269 83 2 chr12 17141572 17141720 -127140769 - MIR SINE MIR -67 141 4 355 357 63 40 chr12 17142343 17142643 -127139846 + L3 LINE CR1 1129 1435 -142 315 0 0 0 chr12 17142793 17142828 -127139661 + (TG)n Simple_repeat Simple_repeat 2 36 0 1529 215 66 18 chr12 17142897 17143334 -127139155 - MLT1C LTR MaLR 0 467 10 303 252 0 137 chr12 17144604 17144712 -127137777 - MIR SINE MIR -56 152 63 353 251 11 99 chr12 17144712 17144903 -127137586 - MER5B DNA MER1_type -4 174 1 303 252 0 137 chr12 17144903 17144925 -127137564 - MIR SINE MIR -145 63 40 2072 107 4 0 chr12 17144947 17145252 -127137237 - AluSx SINE Alu 0 306 1 228 302 0 0 chr12 17145862 17145915 -127136574 - L2 LINE L2 -14 3299 3247 186 43 0 0 chr12 17146400 17146423 -127136066 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 640 49 0 0 chr12 17147800 17147881 -127134608 + L1PA8A LINE L1 6018 6098 -33 2019 40 4 0 chr12 17148619 17148866 -127133623 - L1PA4 LINE L1 0 6155 5908 28 0 0 0 chr12 17149099 17149127 -127133362 + AT_rich Low_complexity Low_complexity 1 28 0 667 183 120 26 chr12 17149127 17149318 -127133171 - L1MA9 LINE L1 -35 6277 6069 2070 185 21 16 chr12 17149634 17150066 -127132423 - MLT1C LTR MaLR -33 434 1 25 31 0 0 chr12 17151381 17151413 -127131076 + AT_rich Low_complexity Low_complexity 1 32 0 1681 164 0 29 chr12 17151796 17152077 -127130412 + AluJo SINE Alu 1 273 -39 184 313 169 66 chr12 17153252 17153418 -127129071 + L2 LINE L2 3075 3257 -15 266 236 0 0 chr12 17153631 17153686 -127128803 + MIR SINE MIR 197 251 -11 2079 151 0 0 chr12 17153807 17154119 -127128370 - AluSx SINE Alu 0 312 1 272 0 79 0 chr12 17154468 17154506 -127127983 + T-rich Low_complexity Low_complexity 5 45 0 1914 138 0 7 chr12 17154506 17154788 -127127701 - AluSx SINE Alu -32 280 1 250 171 0 0 chr12 17155373 17155414 -127127075 - MLT1L LTR MaLR -221 394 354 303 296 164 6 chr12 17155585 17155744 -127126745 + MIR SINE MIR 9 192 -70 1228 132 66 31 chr12 17157935 17158163 -127124326 - MER46A DNA MER2_type 0 236 1 288 301 12 0 chr12 17158715 17158798 -127123691 + L2 LINE L2 3186 3269 -3 709 194 157 8 chr12 17159414 17159662 -127122827 - MER33 DNA MER1_type -32 292 8 2179 141 21 24 chr12 17159896 17160272 -127122217 + THE1C LTR MaLR 1 375 0 11028 97 12 28 chr12 17160272 17161877 -127120612 + THE1C-int LTR MaLR 1 1580 0 2101 136 24 27 chr12 17161877 17162253 -127120236 + THE1C LTR MaLR 1 375 0 314 146 10 126 chr12 17162574 17162677 -127119812 - L1MB7 LINE L1 -19 6165 6075 2168 128 26 0 chr12 17163153 17163457 -127119032 + AluJb SINE Alu 1 312 0 41 36 0 0 chr12 17165410 17165465 -127117024 + AT_rich Low_complexity Low_complexity 1 55 0 2117 146 38 8 chr12 17166436 17166807 -127115682 + MSTB LTR MaLR 1 382 -44 1253 150 191 24 chr12 17166816 17167110 -127115379 - MSTA LTR MaLR -85 343 1 349 135 0 0 chr12 17167110 17167158 -127115331 + MSTB LTR MaLR 379 426 0 7739 173 90 11 chr12 17167158 17168688 -127113801 + MSTB-int LTR MaLR 1 1651 0 2675 135 49 5 chr12 17168688 17169096 -127113393 + MSTB LTR MaLR 1 426 0 4758 217 92 80 chr12 17169185 17170109 -127112380 + L1MCa LINE L1 16 928 -5498 2822 3 0 0 chr12 17170109 17170412 -127112077 - AluYa5 SINE Alu -8 303 1 4758 217 92 80 chr12 17170412 17173965 -127108524 + L1MCa LINE L1 928 4465 -1961 1169 233 164 32 chr12 17173967 17174405 -127108084 + MLT1D LTR MaLR 3 498 -7 531 269 90 0 chr12 17174410 17174611 -127107878 + L1MCa LINE L1 4459 4677 -1749 4987 175 56 22 chr12 17174630 17175778 -127106711 + L1MC3 LINE L1 6599 7785 0 2158 29 44 18 chr12 17175788 17176098 -127106391 + AluY SINE Alu 1 317 0 348 304 160 0 chr12 17176227 17176352 -127106137 - L2 LINE L2 -1 3271 3127 2360 91 0 35 chr12 17176549 17176867 -127105622 - AluSg SINE Alu -3 307 1 773 252 152 29 chr12 17177158 17177507 -127104982 + L2 LINE L2 2922 3313 0 234 256 0 0 chr12 17177797 17177840 -127104649 - MIR SINE MIR -138 70 28 366 255 21 0 chr12 17178129 17178223 -127104266 - MER5A DNA MER1_type -80 109 14 580 266 64 46 chr12 17178329 17178547 -127103942 + MIR SINE MIR 38 259 -3 387 0 0 0 chr12 17180217 17180260 -127102229 + (TG)n Simple_repeat Simple_repeat 2 44 0 233 288 91 53 chr12 17180676 17180808 -127101681 - MER5B DNA MER1_type -2 176 51 227 257 29 57 chr12 17180849 17180919 -127101570 - L2 LINE L2 -1 3271 3204 187 250 0 0 chr12 17181629 17181677 -127100812 + MIR SINE MIR 51 98 -164 216 321 47 65 chr12 17181679 17181894 -127100595 - L2 LINE L2 -667 2647 2437 23 0 0 0 chr12 17183448 17183471 -127099018 + AT_rich Low_complexity Low_complexity 1 23 0 25 83 0 0 chr12 17183899 17183959 -127098530 + AT_rich Low_complexity Low_complexity 1 60 0 386 273 43 43 chr12 17184264 17184403 -127098086 - MIR SINE MIR -100 162 24 511 283 13 0 chr12 17184702 17184854 -127097635 + MIR3 SINE MIR 49 202 -6 404 243 104 21 chr12 17185785 17185929 -127096560 - MIR3 SINE MIR -9 199 44 469 250 104 26 chr12 17187269 17187461 -127095028 + L3b LINE CR1 1178 1384 -199 794 183 112 6 chr12 17187557 17187726 -127094763 - MER5A DNA MER1_type -1 188 2 297 214 117 84 chr12 17188349 17188454 -127094035 - LTR67 LTR ERVL -12 545 432 2340 157 65 2 chr12 17188454 17188855 -127093634 - MSTA LTR MaLR -2 426 1 297 214 117 84 chr12 17188855 17188903 -127093586 - LTR67 LTR ERVL -125 432 387 255 83 0 0 chr12 17188914 17188950 -127093539 + U2 snRNA snRNA 1 36 -152 310 326 0 0 chr12 17189086 17189178 -127093311 - LTR67 LTR ERVL -385 172 81 2444 63 0 7 chr12 17189622 17189925 -127092564 - AluY SINE Alu -10 301 1 878 262 178 22 chr12 17189978 17190612 -127091877 - HAL1b LINE L1 -475 873 141 720 286 66 9 chr12 17193539 17193766 -127088723 - MIR SINE MIR -13 249 10 232 290 0 43 chr12 17193827 17193896 -127088593 - L3 LINE CR1 -3 1574 1509 3888 189 39 22 chr12 17194831 17195472 -127087017 + MER4D LTR ERV1 1 629 -274 2589 114 62 5 chr12 17195472 17195877 -127086612 + MSTA LTR MaLR 1 428 0 3888 189 39 22 chr12 17195877 17195904 -127086585 + MER4D LTR ERV1 629 654 -249 1481 203 54 135 chr12 17195904 17196570 -127085919 + LTR9 LTR ERV1 1 612 0 3888 189 39 22 chr12 17196570 17196772 -127085717 + MER4D LTR ERV1 654 887 -16 2198 113 0 3 chr12 17196931 17197215 -127085274 + AluSq SINE Alu 1 283 -30 1686 72 0 0 chr12 17197643 17197852 -127084637 + AluY SINE Alu 97 305 -6 1131 212 45 38 chr12 17197905 17198193 -127084296 + Charlie1b DNA MER1_type 5 294 -229 489 156 0 0 chr12 17198207 17198297 -127084192 + Charlie1b DNA MER1_type 428 517 -6 286 254 36 17 chr12 17198369 17198486 -127084003 + L1ME LINE L1 5467 5585 -536 1360 164 0 27 chr12 17198500 17198720 -127083769 + AluJo SINE Alu 1 214 -98 258 188 0 0 chr12 17198721 17198769 -127083720 + L1 LINE L1 3586 3633 -2513 21 0 0 0 chr12 17198772 17198793 -127083696 + AT_rich Low_complexity Low_complexity 1 21 0 2115 134 0 0 chr12 17198793 17199091 -127083398 - AluSx SINE Alu -14 298 1 9380 156 32 83 chr12 17199097 17201641 -127080848 + L1PA13 LINE L1 3627 6159 -4 1257 136 0 20 chr12 17201625 17201823 -127080666 + AluJb SINE Alu 118 311 -1 4795 133 32 45 chr12 17201823 17202112 -127080377 + L1MA4 LINE L1 5322 5613 -687 1573 98 0 0 chr12 17202112 17202317 -127080172 + AluSp SINE Alu 106 310 -3 4795 133 32 45 chr12 17202317 17203015 -127079474 + L1MA4 LINE L1 5613 6297 -3 4005 121 180 81 chr12 17203835 17205256 -127077233 + pTR5 LTR ERV1 743 2438 0 1905 101 78 46 chr12 17206636 17206984 -127075505 + MER46B DNA MER2_type 3 236 0 317 293 106 43 chr12 17207003 17207419 -127075070 - MLT1K LTR MaLR -36 552 111 187 365 58 19 chr12 17207625 17207781 -127074708 - L2 LINE L2 -824 2490 2329 227 294 112 49 chr12 17208553 17208696 -127073793 + L2 LINE L2 3101 3252 -20 1001 268 28 12 chr12 17208835 17209085 -127073404 + MIR SINE MIR 2 255 -7 669 222 36 5 chr12 17209353 17209547 -127072942 + L1MD3 LINE L1 7796 7995 0 321 279 203 33 chr12 17209607 17210335 -127072154 + L1ME4a LINE L1 5269 6120 -1 588 214 26 17 chr12 17210631 17210748 -127071741 + FLAM_A SINE Alu 5 122 -11 242 294 143 16 chr12 17210749 17210875 -127071614 + MIR SINE MIR 114 255 -7 415 280 42 28 chr12 17211127 17211270 -127071219 + L2 LINE L2 3169 3313 0 700 197 0 7 chr12 17211493 17211645 -127070844 - MER63 DNA MER1_type 0 1061 911 289 141 47 94 chr12 17211675 17211721 -127070768 - MER63 DNA MER1_type -129 707 660 2249 119 0 3 chr12 17211721 17212023 -127070466 - AluSg SINE Alu -8 302 2 289 141 47 94 chr12 17212023 17212061 -127070428 - MER63 DNA MER1_type -176 660 1 254 155 35 0 chr12 17212475 17212533 -127069956 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 1915 242 41 37 chr12 17213167 17214123 -127068366 - L1ME2 LINE L1 -2 6295 5370 695 246 20 15 chr12 17215062 17215261 -127067228 - MARNA DNA Mariner -18 568 369 328 280 51 25 chr12 17215661 17215818 -127066671 - MARNA DNA Mariner -228 358 198 240 274 83 0 chr12 17215876 17215960 -127066529 - MLT1I LTR MaLR -73 336 246 21 36 0 0 chr12 17216314 17216342 -127066147 + AT_rich Low_complexity Low_complexity 1 28 0 264 241 0 17 chr12 17217401 17217459 -127065030 + L2 LINE L2 3007 3063 -209 443 314 136 34 chr12 17217501 17217737 -127064752 - MIR SINE MIR -1 261 2 613 174 0 0 chr12 17217805 17217914 -127064575 - MER45B DNA AcHobo -368 672 564 962 179 19 82 chr12 17217914 17218182 -127064307 + MLT1A1 LTR MaLR 113 363 -2 271 310 123 29 chr12 17218308 17218479 -127064010 + MIR SINE MIR 6 192 -70 180 0 0 0 chr12 17220324 17220344 -127062145 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 449 244 89 16 chr12 17220581 17220704 -127061785 - MIR SINE MIR -44 218 87 586 179 137 24 chr12 17223278 17223446 -127059043 + LTR41 LTR ERVL 1 187 -586 441 252 29 81 chr12 17223497 17223743 -127058746 + LTR41 LTR ERVL 462 694 -79 454 305 39 19 chr12 17223861 17224015 -127058474 - MER91A DNA MER1_type -22 174 18 217 345 0 0 chr12 17224069 17224127 -127058362 - L2 LINE L2 -93 3179 3122 2253 227 28 30 chr12 17224190 17224255 -127058234 - MLT1F LTR MaLR -9 533 469 2028 186 38 26 chr12 17224255 17224680 -127057809 + MSTB1 LTR MaLR 1 430 -2 2253 227 28 30 chr12 17224680 17225148 -127057341 - MLT1F LTR MaLR -73 469 1 216 135 0 0 chr12 17225992 17226029 -127056460 + (CA)n Simple_repeat Simple_repeat 2 38 0 668 253 30 36 chr12 17226333 17226638 -127055851 - AluSq SINE Alu 0 303 1 21 0 0 0 chr12 17226850 17226871 -127055618 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr12 17227007 17227042 -127055447 + GC_rich Low_complexity Low_complexity 1 35 0 29 78 0 0 chr12 17227069 17227133 -127055356 + GC_rich Low_complexity Low_complexity 1 64 0 2244 124 0 6 chr12 17227693 17228008 -127054481 - AluSq SINE Alu 0 313 1 21 0 0 0 chr12 17228214 17228235 -127054254 + AT_rich Low_complexity Low_complexity 1 21 0 213 121 0 0 chr12 17228436 17228469 -127054020 + (CA)n Simple_repeat Simple_repeat 2 34 0 973 220 31 102 chr12 17228830 17229212 -127053277 + MLT2D LTR ERVL 15 369 -45 225 91 0 0 chr12 17229232 17229265 -127053224 - MLT2D LTR ERVL 0 414 382 271 161 18 0 chr12 17229311 17229367 -127053122 + MLT2D LTR ERVL 464 520 0 399 232 92 8 chr12 17229667 17229787 -127052702 - MLT1H LTR MaLR 0 542 420 323 244 113 9 chr12 17229892 17230007 -127052482 - MLT1H LTR MaLR -307 242 116 2384 143 64 2 chr12 17230436 17230843 -127051646 + MSTB1 LTR MaLR 1 432 0 227 198 24 180 chr12 17231035 17231202 -127051287 + MIR SINE MIR 120 260 -2 2408 43 0 0 chr12 17232843 17233120 -127049369 + AluY SINE Alu 3 279 -32 207 0 0 0 chr12 17233123 17233146 -127049343 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 239 309 0 0 chr12 17233583 17233638 -127048851 + L2 LINE L2 3198 3252 -61 1041 166 0 17 chr12 17234551 17234726 -127047763 + AluJo SINE Alu 126 297 -15 560 217 32 74 chr12 17235029 17235218 -127047271 + MIR SINE MIR 12 192 -70 21 82 0 0 chr12 17235234 17235283 -127047206 + AT_rich Low_complexity Low_complexity 1 49 0 2178 128 3 3 chr12 17235433 17235739 -127046750 + AluSx SINE Alu 1 306 -6 249 108 0 0 chr12 17236127 17236164 -127046325 + (CA)n Simple_repeat Simple_repeat 1 37 0 623 169 81 16 chr12 17237834 17237958 -127044531 - FLAM_C SINE Alu 0 133 2 24 0 0 0 chr12 17238360 17238384 -127044105 + AT_rich Low_complexity Low_complexity 1 24 0 663 215 36 113 chr12 17238709 17238983 -127043506 - MER102b DNA MER1_type -5 336 84 220 91 0 55 chr12 17238984 17239039 -127043450 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 493 178 0 59 chr12 17239161 17239279 -127043210 - THE1C LTR MaLR -264 111 1 10374 111 36 8 chr12 17239279 17240816 -127041673 - THE1C-int LTR MaLR 0 1580 1 453 111 0 0 chr12 17240857 17240920 -127041569 + L1PA7 LINE L1 6077 6139 -15 463 222 6 11 chr12 17240959 17241139 -127041350 + (TA)n Simple_repeat Simple_repeat 1 179 0 1761 107 103 19 chr12 17241139 17241466 -127041023 - THE1C LTR MaLR -23 409 1 1435 206 34 3 chr12 17241466 17241762 -127040727 + MLT1A1 LTR MaLR 61 365 0 202 269 11 65 chr12 17242724 17242817 -127039672 + MIR SINE MIR 125 212 -50 2315 96 3 0 chr12 17242827 17243129 -127039360 - AluSp SINE Alu -10 303 1 555 262 14 0 chr12 17243255 17243400 -127039089 + MER58B DNA MER1_type 195 341 0 216 0 0 0 chr12 17244391 17244415 -127038074 + (T)n Simple_repeat Simple_repeat 1 24 0 327 307 112 63 chr12 17244615 17244820 -127037669 - MIR SINE MIR -24 238 24 1730 185 46 6 chr12 17245380 17245731 -127036758 - MLT1A1 LTR MaLR 0 365 1 333 258 111 35 chr12 17245983 17246461 -127036028 + L1MC4 LINE L1 7278 7893 -149 454 75 43 21 chr12 17246462 17246556 -127035933 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 288 281 9 9 chr12 17246576 17246690 -127035799 + L1MC4 LINE L1 7929 8042 0 410 239 130 57 chr12 17246701 17246931 -127035558 + L1ME3 LINE L1 5895 6141 -21 594 265 33 7 chr12 17247707 17247858 -127034631 + L2 LINE L2 3159 3313 0 570 288 55 55 chr12 17248020 17248364 -127034125 - MLT1J1 LTR MaLR 0 446 103 712 194 32 75 chr12 17248404 17248590 -127033899 + MER45A DNA AcHobo 1 178 0 5012 151 21 37 chr12 17249341 17251420 -127031069 - L1PB4 LINE L1 -2 6154 4116 1600 206 97 9 chr12 17251422 17251854 -127030635 - L1ME1 LINE L1 -298 5868 5399 1269 272 42 53 chr12 17251957 17252082 -127030407 - L1MEc LINE L1 -4712 1684 1559 1901 160 27 0 chr12 17252082 17252375 -127030114 + AluSx SINE Alu 1 301 -11 1269 272 42 53 chr12 17252375 17252496 -127029993 - L1MEc LINE L1 -4837 1559 1438 1739 167 32 35 chr12 17252496 17252808 -127029681 - AluJo SINE Alu -1 311 1 1269 272 42 53 chr12 17252808 17253116 -127029373 - L1MEc LINE L1 -4958 1438 1135 2379 110 22 27 chr12 17253116 17253481 -127029008 - THE1B LTR MaLR -1 363 1 1269 272 42 53 chr12 17253481 17253730 -127028759 - L1MEc LINE L1 -5261 1135 885 1137 264 43 14 chr12 17253762 17254133 -127028356 - L1MEc LINE L1 -5980 416 35 2334 106 0 0 chr12 17254141 17254442 -127028047 - AluSx SINE Alu -11 301 1 21 0 0 0 chr12 17255645 17255666 -127026823 + AT_rich Low_complexity Low_complexity 1 21 0 197 310 206 43 chr12 17256331 17256728 -127025761 - L2 LINE L2 -889 2425 1964 915 135 45 0 chr12 17256821 17256977 -127025512 + THE1A LTR MaLR 62 224 -131 310 279 77 5 chr12 17257110 17257318 -127025171 + L1ME4a LINE L1 5651 5873 -248 207 344 16 0 chr12 17258382 17258446 -127024043 + L2 LINE L2 3204 3268 -4 424 274 109 25 chr12 17258562 17258597 -127023892 - MIR SINE MIR 0 262 231 396 0 0 0 chr12 17258597 17258641 -127023848 + (TTATA)n Simple_repeat Simple_repeat 5 48 0 424 274 109 25 chr12 17258641 17258806 -127023683 - MIR SINE MIR -31 231 45 24 53 0 0 chr12 17259338 17259376 -127023113 + AT_rich Low_complexity Low_complexity 1 38 0 2593 83 20 0 chr12 17259382 17259730 -127022759 + THE1A LTR MaLR 1 355 0 458 178 188 0 chr12 17259752 17259853 -127022636 - FLAM_C SINE Alu -23 120 1 500 99 0 12 chr12 17260029 17260110 -127022379 + (TA)n Simple_repeat Simple_repeat 2 81 0 2299 151 61 7 chr12 17260639 17261049 -127021440 + MSTB1 LTR MaLR 1 432 0 359 301 91 0 chr12 17261896 17262039 -127020450 - L1ME LINE L1 -422 5699 5544 262 372 69 14 chr12 17262239 17262384 -127020105 - L2 LINE L2 -4 3268 3116 656 274 65 74 chr12 17263225 17263656 -127018833 + LTR16A LTR ERVL 20 446 -4 309 196 77 115 chr12 17264226 17264435 -127018054 - L1MC5 LINE L1 -439 7522 7322 574 217 99 103 chr12 17264488 17264550 -127017939 - L1MC5 LINE L1 -1055 6906 6845 2007 132 0 0 chr12 17264550 17264868 -127017621 - AluSx SINE Alu 0 323 6 574 217 99 103 chr12 17264868 17265075 -127017414 - L1MC5 LINE L1 -1116 6845 6636 369 313 55 39 chr12 17265531 17266115 -127016374 - HAL1b LINE L1 -718 630 38 513 271 150 10 chr12 17267073 17267280 -127015209 - MIR SINE MIR -7 255 20 23 68 0 0 chr12 17267286 17267330 -127015159 + AT_rich Low_complexity Low_complexity 1 44 0 578 311 75 37 chr12 17267679 17267920 -127014569 + MIR SINE MIR 9 258 -4 474 261 45 20 chr12 17269448 17269647 -127012842 - Zaphod DNA AcHobo -2674 1357 1154 1032 214 52 18 chr12 17269654 17269986 -127012503 + MER74C LTR ERVL 2 489 -133 1285 189 59 75 chr12 17269986 17270357 -127012132 - MLT1A1 LTR MaLR 0 365 1 1032 214 52 18 chr12 17270357 17270463 -127012026 + MER74C LTR ERVL 489 590 -32 2791 226 88 67 chr12 17270486 17270633 -127011856 - Zaphod DNA AcHobo -2868 1163 1021 2065 100 0 14 chr12 17270633 17270913 -127011576 - AluSc SINE Alu -33 276 1 2791 226 88 67 chr12 17270913 17271331 -127011158 - Zaphod DNA AcHobo -3010 1021 613 855 183 4 108 chr12 17271331 17271571 -127010918 + MER20 DNA MER1_type 1 215 -4 2791 226 88 67 chr12 17271571 17272143 -127010346 - Zaphod DNA AcHobo -3418 613 1 430 195 9 18 chr12 17273006 17273119 -127009370 + CT-rich Low_complexity Low_complexity 1 112 0 220 319 118 34 chr12 17273747 17273866 -127008623 + MIR SINE MIR 71 199 -63 2447 54 0 0 chr12 17274336 17274630 -127007859 - AluY SINE Alu -17 294 1 223 321 0 0 chr12 17274818 17274871 -127007618 - MIR SINE MIR -10 252 200 512 56 0 0 chr12 17275042 17275114 -127007375 + Alu SINE Alu 236 307 -5 264 345 132 23 chr12 17275906 17276126 -127006363 - L2 LINE L2 -896 2418 2175 2391 112 0 14 chr12 17276988 17277346 -127005143 + THE1B LTR MaLR 1 353 -11 454 188 107 9 chr12 17277550 17277662 -127004827 - MER112 DNA MER1_type -27 233 111 1867 216 22 13 chr12 17277789 17278247 -127004242 + MLT1C LTR MaLR 1 462 -5 1704 195 17 66 chr12 17279054 17279360 -127003129 - MLT1C LTR MaLR 0 467 191 2270 86 0 0 chr12 17279360 17279663 -127002826 - AluSc SINE Alu 0 303 1 1704 195 17 66 chr12 17279663 17279837 -127002652 - MLT1C LTR MaLR -276 191 10 236 239 0 14 chr12 17280255 17280326 -127002163 - MLT1B LTR MaLR -183 207 138 816 286 53 0 chr12 17280820 17281065 -127001424 + MIR SINE MIR 5 262 0 1398 70 0 0 chr12 17281207 17281378 -127001111 - AluY SINE Alu -10 301 131 210 343 0 0 chr12 17282517 17282584 -126999905 - MIR3 SINE MIR -11 197 131 433 344 68 52 chr12 17282627 17282953 -126999536 + L2 LINE L2 2956 3286 -27 403 287 7 75 chr12 17283358 17283539 -126998950 + MER5B DNA MER1_type 4 184 -5 1530 162 159 14 chr12 17283670 17284016 -126998473 + MSTD LTR MaLR 1 396 0 378 228 29 59 chr12 17285535 17285671 -126996818 + MER106A DNA MER1_type 8 139 -97 185 216 0 59 chr12 17286276 17286327 -126996162 - L2 LINE L2 0 3313 3266 1609 188 15 18 chr12 17286327 17286657 -126995832 - MSTD LTR MaLR 0 396 68 1384 191 23 0 chr12 17286661 17286918 -126995571 + AluJb SINE Alu 6 268 -44 243 0 0 0 chr12 17286924 17286951 -126995538 + (CA)n Simple_repeat Simple_repeat 2 28 0 392 173 13 0 chr12 17286958 17287033 -126995456 - MSTD LTR MaLR -320 76 1 371 291 96 66 chr12 17287155 17287297 -126995192 - L1ME4a LINE L1 -294 5827 5691 2232 127 0 3 chr12 17287297 17287605 -126994884 - AluSx SINE Alu -5 307 1 371 291 96 66 chr12 17287605 17287795 -126994694 - L1ME4a LINE L1 -430 5691 5485 239 231 0 94 chr12 17288490 17288607 -126993882 - L1ME4a LINE L1 -2380 5428 5323 647 329 76 32 chr12 17290188 17290686 -126991803 - MLT1K LTR MaLR 0 588 69 286 321 164 19 chr12 17291238 17291506 -126990983 + L2 LINE L2 2167 2473 -841 656 272 126 60 chr12 17291612 17292075 -126990414 - L2 LINE L2 -31 3282 2751 2146 110 14 0 chr12 17292075 17292365 -126990124 + AluY SINE Alu 1 294 -17 656 272 126 60 chr12 17292365 17292463 -126990026 - L2 LINE L2 -562 2751 2661 1346 189 41 107 chr12 17292472 17292684 -126989805 + MLT1B LTR MaLR 1 175 -215 2272 199 22 113 chr12 17292684 17292859 -126989630 + LTR8 LTR ERV1 1 190 -501 2366 92 0 0 chr12 17292859 17293165 -126989324 - AluSx SINE Alu -6 306 1 2272 199 22 113 chr12 17293165 17293749 -126988740 + LTR8 LTR ERV1 190 691 0 1346 189 41 107 chr12 17293749 17293949 -126988540 + MLT1B LTR MaLR 175 386 -4 276 290 80 0 chr12 17293981 17294081 -126988408 - MLT1J2 LTR MaLR -65 385 278 3878 284 128 4 chr12 17295947 17297318 -126985171 - L2 LINE L2 -653 2661 1121 335 225 139 7 chr12 17297336 17297487 -126985002 - LTR50 LTR ERVL 0 795 625 560 211 193 6 chr12 17297530 17297691 -126984798 - LTR50 LTR ERVL -604 191 1 356 277 78 14 chr12 17297692 17297833 -126984656 - L2 LINE L2 -2207 1107 958 242 286 36 0 chr12 17297838 17297922 -126984567 + MER91C DNA MER1_type 54 140 0 270 85 0 0 chr12 17298855 17298902 -126983587 - L1MB4 LINE L1 0 6180 6134 278 301 55 48 chr12 17299761 17299907 -126982582 - L2 LINE L2 -69 3244 3098 904 67 0 8 chr12 17301889 17302008 -126980481 + L1PA16 LINE L1 6040 6157 -9 207 0 0 0 chr12 17303518 17303541 -126978948 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 262 259 0 0 chr12 17303544 17303598 -126978891 - L2 LINE L2 -33 3239 3186 402 313 98 0 chr12 17303780 17303943 -126978546 + MIR SINE MIR 9 187 -75 180 125 0 0 chr12 17304008 17304040 -126978449 + (CTATA)n Simple_repeat Simple_repeat 2 33 0 208 315 65 46 chr12 17304664 17304772 -126977717 - MIR SINE MIR -58 150 41 2308 105 0 3 chr12 17305116 17305422 -126977067 - AluSx SINE Alu -7 305 1 182 257 76 76 chr12 17306117 17306261 -126976228 - MER5B DNA MER1_type -5 173 30 433 264 49 28 chr12 17306294 17306438 -126976051 + MIR SINE MIR 7 153 -109 2631 219 91 30 chr12 17306446 17308086 -126974403 + L1ME2 LINE L1 4415 6170 0 338 291 19 0 chr12 17309008 17309111 -126973378 + L3 LINE CR1 1259 1363 -214 195 319 22 33 chr12 17309146 17309237 -126973252 - L3 LINE CR1 -110 1467 1378 586 272 130 0 chr12 17309274 17309458 -126973031 + MIR SINE MIR 50 257 -5 212 387 0 0 chr12 17309467 17309542 -126972947 + L3 LINE CR1 1471 1545 -32 203 356 0 0 chr12 17309949 17310008 -126972481 - L2 LINE L2 -10 3303 3245 1281 244 141 8 chr12 17310126 17310515 -126971974 - MLT1H LTR MaLR -103 446 6 383 331 53 0 chr12 17311982 17312115 -126970374 - MIR3 SINE MIR -38 170 31 26 0 0 0 chr12 17313496 17313522 -126968967 + AT_rich Low_complexity Low_complexity 1 26 0 379 323 63 21 chr12 17314152 17314341 -126968148 + MIR SINE MIR 22 218 -44 596 300 6 18 chr12 17316087 17316257 -126966232 - MER5A DNA MER1_type -21 168 1 968 260 41 8 chr12 17316535 17316777 -126965712 + MIR SINE MIR 13 262 0 891 223 33 33 chr12 17317284 17317499 -126964990 + MER20 DNA MER1_type 4 218 -1 222 118 0 0 chr12 17318126 17318160 -126964329 + (CA)n Simple_repeat Simple_repeat 2 35 0 204 239 73 12 chr12 17318864 17318987 -126963502 + MIR3 SINE MIR 47 205 -3 1848 144 0 14 chr12 17319065 17319343 -126963146 - AluJb SINE Alu -38 274 1 612 312 48 26 chr12 17320789 17321154 -126961335 + MLT1K LTR MaLR 17 422 -166 4058 206 34 59 chr12 17321207 17322272 -126960217 + MER45B DNA AcHobo 3 1040 0 1750 176 15 76 chr12 17322281 17322690 -126959799 - MLT1B LTR MaLR 0 390 7 272 242 11 55 chr12 17322697 17322788 -126959701 + MLT1K LTR MaLR 491 577 -11 23 0 0 0 chr12 17322964 17322987 -126959502 + AT_rich Low_complexity Low_complexity 1 23 0 296 245 118 0 chr12 17324080 17324182 -126958307 - MARNA DNA Mariner -38 548 435 276 333 49 0 chr12 17324099 17324201 -126958288 + MARNA DNA Mariner 64 170 -416 * 351 113 0 0 chr12 17324307 17324360 -126958129 + (TTCC)n Simple_repeat Simple_repeat 2 54 0 252 279 184 14 chr12 17324376 17324523 -126957966 - MARNA DNA Mariner -336 250 79 342 80 0 0 chr12 17324549 17324599 -126957890 + (CA)n Simple_repeat Simple_repeat 2 51 0 209 239 0 0 chr12 17325221 17325267 -126957222 + L2 LINE L2 3224 3269 -3 183 304 98 11 chr12 17325568 17325660 -126956829 + L2 LINE L2 3151 3250 -22 1629 181 20 17 chr12 17325660 17325958 -126956531 - AluJo SINE Alu -10 302 4 220 250 36 0 chr12 17326583 17326639 -126955850 + CT-rich Low_complexity Low_complexity 3 60 0 1998 153 3 0 chr12 17326656 17326957 -126955532 - AluSx SINE Alu -10 302 1 1453 236 109 27 chr12 17327572 17328194 -126954295 - L1MC5 LINE L1 -53 7908 7236 2545 68 0 0 chr12 17328919 17329230 -126953259 - AluY SINE Alu 0 311 1 972 26 0 0 chr12 17329441 17329554 -126952935 - AluY SINE Alu -12 299 187 397 332 16 10 chr12 17329563 17329717 -126952772 - MIR SINE MIR -61 147 2 269 233 70 12 chr12 17329811 17329897 -126952592 - MER103 DNA DNA -49 117 27 398 289 56 21 chr12 17329959 17330101 -126952388 + MIR3 SINE MIR 30 176 -32 381 281 74 20 chr12 17330173 17330375 -126952114 + L2 LINE L2 2287 2499 -815 339 328 108 16 chr12 17330375 17330561 -126951928 + MIR SINE MIR 2 204 -58 256 384 53 0 chr12 17330587 17330793 -126951696 + L2 LINE L2 2511 2727 -587 708 273 13 70 chr12 17330998 17331298 -126951191 + MLT1G3 LTR MaLR 1 283 -247 342 214 0 0 chr12 17331326 17331410 -126951079 + (TG)n Simple_repeat Simple_repeat 2 85 0 201 147 0 0 chr12 17332806 17332840 -126949649 + (GA)n Simple_repeat Simple_repeat 2 35 0 608 335 29 0 chr12 17333532 17333741 -126948748 + MIR SINE MIR 27 241 -21 2215 97 37 0 chr12 17333803 17334102 -126948387 - AluSg SINE Alu 0 310 1 409 332 51 17 chr12 17334484 17334719 -126947770 + MIR SINE MIR 20 262 0 392 304 16 73 chr12 17336626 17336817 -126945672 - MER5A DNA MER1_type 0 189 10 485 257 46 57 chr12 17338296 17338471 -126944018 - MIR SINE MIR -88 174 2 423 257 114 9 chr12 17338507 17338612 -126943877 + L2 LINE L2 3198 3313 0 331 318 133 17 chr12 17340016 17340189 -126942300 + MIR SINE MIR 2 194 -68 204 163 0 0 chr12 17340250 17340293 -126942196 + CT-rich Low_complexity Low_complexity 2 44 0 230 312 78 0 chr12 17340561 17340638 -126941851 + L2 LINE L2 3191 3273 -40 491 284 56 19 chr12 17340829 17340991 -126941498 - MIR SINE MIR -48 214 47 305 329 148 0 chr12 17341612 17341767 -126940722 - MIR SINE MIR -6 256 79 585 0 0 0 chr12 17341787 17341852 -126940637 + (GA)n Simple_repeat Simple_repeat 1 65 0 189 250 0 109 chr12 17342690 17342754 -126939735 + MIR SINE MIR 26 82 -126 * 313 353 0 20 chr12 17342752 17342854 -126939635 + L2 LINE L2 3172 3271 -1 435 119 0 0 chr12 17343199 17343266 -126939223 + (TCTCTG)n Simple_repeat Simple_repeat 5 71 0 277 318 0 0 chr12 17344068 17344134 -126938355 + L2 LINE L2 3172 3237 -35 234 207 0 0 chr12 17344369 17344427 -126938062 + (TG)n Simple_repeat Simple_repeat 1 58 0 449 285 149 19 chr12 17345441 17345655 -126936834 + MIR SINE MIR 20 261 -1 240 296 102 9 chr12 17346400 17346508 -126935981 - MIR3 SINE MIR -10 198 81 1075 231 39 103 chr12 17346886 17347419 -126935070 + LTR53 LTR ERVL 21 519 0 410 219 78 23 chr12 17347623 17347751 -126934738 + L1MA4 LINE L1 6161 6295 -5 209 57 29 0 chr12 17348186 17348221 -126934268 + (TAA)n Simple_repeat Simple_repeat 2 37 0 374 327 76 39 chr12 17348593 17348990 -126933499 + L1ME LINE L1 2819 3236 -2910 5778 143 23 28 chr12 17349200 17349481 -126933008 + L1MA7 LINE L1 4591 4872 -1419 2348 109 19 24 chr12 17349481 17349857 -126932632 + THE1C LTR MaLR 1 374 -1 5778 143 23 28 chr12 17349857 17351279 -126931210 + L1MA7 LINE L1 4872 6289 -2 389 316 94 46 chr12 17351357 17351791 -126930698 + L1ME LINE L1 3761 4215 -1931 1812 133 71 17 chr12 17352182 17352476 -126930013 + AluSx SINE Alu 3 312 0 26 50 0 0 chr12 17352564 17352604 -126929885 + AT_rich Low_complexity Low_complexity 1 40 0 580 327 59 20 chr12 17353098 17353538 -126928951 + L1ME LINE L1 5311 5767 -354 213 39 0 0 chr12 17353540 17353566 -126928923 + (TA)n Simple_repeat Simple_repeat 2 27 0 312 310 0 0 chr12 17353577 17353664 -126928825 - L1MC4 LINE L1 -1335 6707 6621 497 287 67 20 chr12 17354179 17354374 -126928115 + MIR SINE MIR 53 256 -6 249 303 15 0 chr12 17354561 17354627 -126927862 - MIR SINE MIR -110 152 86 249 188 47 47 chr12 17355176 17355240 -126927249 + L2 LINE L2 3250 3313 0 435 358 66 56 chr12 17355533 17355649 -126926840 + L2 LINE L2 1146 1259 -2055 2373 74 3 23 chr12 17355649 17355959 -126926530 - AluSq SINE Alu -9 304 1 435 358 66 56 chr12 17355959 17356401 -126926088 + L2 LINE L2 1259 1713 -1601 1506 175 26 29 chr12 17356401 17356709 -126925780 + AluJo SINE Alu 6 312 0 435 358 66 56 chr12 17356709 17356724 -126925765 + L2 LINE L2 1713 1726 -1588 570 128 30 163 chr12 17356736 17356939 -126925550 - MER53 DNA DNA -13 176 1 1055 328 96 76 chr12 17356941 17358230 -126924259 + L2 LINE L2 1722 3034 -238 269 288 42 108 chr12 17358560 17358772 -126923717 - MIR SINE MIR -52 210 13 1479 312 122 30 chr12 17360414 17361266 -126921223 + L3 LINE CR1 325 1254 -323 321 291 93 0 chr12 17361347 17361433 -126921056 - MIR SINE MIR -168 94 1 258 206 206 27 chr12 17361448 17361521 -126920968 + L3 LINE CR1 1252 1337 -240 184 229 42 0 chr12 17361603 17361651 -126920838 + L3 LINE CR1 1523 1572 -5 289 278 143 23 chr12 17362062 17362195 -126920294 + MIR SINE MIR 65 213 -49 796 251 99 103 chr12 17362268 17362929 -126919560 + MER21B LTR ERV1 60 646 -217 2484 78 0 3 chr12 17362929 17363236 -126919253 + AluSc SINE Alu 1 306 -3 273 299 103 8 chr12 17363523 17363640 -126918849 - MIR SINE MIR -81 181 54 347 296 45 30 chr12 17363849 17363981 -126918508 + L2 LINE L2 3175 3308 -5 741 313 12 19 chr12 17365444 17365700 -126916789 + MIR SINE MIR 9 262 0 248 180 16 33 chr12 17365720 17365781 -126916708 - MIR SINE MIR -17 245 186 27 29 0 0 chr12 17365908 17365942 -126916547 + AT_rich Low_complexity Low_complexity 1 34 0 501 216 16 60 chr12 17366030 17366215 -126916274 + L1MC5 LINE L1 7711 7887 -74 349 208 75 33 chr12 17366231 17366351 -126916138 + L1ME4a LINE L1 5967 6091 -30 1983 182 6 0 chr12 17366411 17366757 -126915732 - MER7A DNA MER2_type 0 346 1 186 43 0 0 chr12 17366853 17366876 -126915613 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 989 275 17 42 chr12 17368159 17368512 -126913977 + L2 LINE L2 471 814 -2500 812 221 74 0 chr12 17368521 17368684 -126913805 + MER58A DNA MER1_type 1 175 -49 315 244 44 0 chr12 17368693 17368783 -126913706 + L2 LINE L2 819 912 -2402 312 316 17 26 chr12 17368797 17368914 -126913575 + L2 LINE L2 3197 3312 -1 917 302 163 15 chr12 17369169 17369917 -126912572 - L2 LINE L2 -1 3312 2455 339 86 0 52 chr12 17370056 17370114 -126912375 + MADE1 DNA Mariner 1 55 -25 598 285 132 21 chr12 17370116 17370351 -126912138 - MIR SINE MIR -1 261 1 256 314 42 2 chr12 17370485 17370605 -126911884 - MIR SINE MIR -66 142 28 26 30 0 0 chr12 17371135 17371168 -126911321 + AT_rich Low_complexity Low_complexity 1 33 0 2426 61 0 7 chr12 17371728 17372022 -126910467 - AluSc SINE Alu -17 292 1 5294 39 0 3 chr12 17372732 17373371 -126909118 - L1PA5 LINE L1 0 6154 5518 2754 35 14 0 chr12 17373371 17373819 -126908670 + L1PA5 LINE L1 5052 5503 -651 336 329 58 0 chr12 17373921 17374058 -126908431 + MIR SINE MIR 48 192 -70 1570 172 63 13 chr12 17374064 17374367 -126908122 + MER2 DNA MER2_type 13 330 -15 24 67 0 0 chr12 17374490 17374535 -126907954 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr12 17375154 17375184 -126907305 + AT_rich Low_complexity Low_complexity 1 30 0 278 327 71 9 chr12 17375358 17375471 -126907018 - L2 LINE L2 -8 3264 3145 935 327 73 37 chr12 17376481 17376553 -126905936 + L2 LINE L2 2459 2527 -745 2493 157 16 16 chr12 17376553 17376987 -126905502 + Tigger2a DNA MER2_type 1 434 0 935 327 73 37 chr12 17376987 17377436 -126905053 + L2 LINE L2 2527 3011 -261 420 20 0 0 chr12 17377642 17377691 -126904798 + (CA)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr12 17377715 17377737 -126904752 + AT_rich Low_complexity Low_complexity 1 22 0 274 348 61 30 chr12 17377888 17378118 -126904371 - L2 LINE L2 -1527 1787 1551 21 36 0 0 chr12 17378605 17378633 -126903856 + AT_rich Low_complexity Low_complexity 1 28 0 2430 64 0 32 chr12 17378638 17378951 -126903538 + AluY SINE Alu 1 303 -8 999 285 157 70 chr12 17379253 17380640 -126901849 + HAL1 LINE L1 1 1508 -999 1974 161 0 0 chr12 17380640 17381034 -126901455 + AluSx SINE Alu 1 394 0 815 196 235 18 chr12 17381275 17381582 -126900907 - MER58D DNA MER1_type -15 371 1 608 253 148 0 chr12 17381725 17381887 -126900602 + MER5A DNA MER1_type 4 189 0 1134 234 47 44 chr12 17381982 17382346 -126900143 - MLT1A1 LTR MaLR 0 365 1 654 104 0 0 chr12 17383255 17383351 -126899138 + (TATATG)n Simple_repeat Simple_repeat 1 96 0 2481 58 0 10 chr12 17386352 17386660 -126895829 + AluY SINE Alu 1 305 -6 253 190 17 35 chr12 17386848 17386906 -126895583 - MIR SINE MIR 0 262 206 2483 69 0 3 chr12 17388816 17389119 -126893370 - AluY SINE Alu -9 302 1 320 247 177 48 chr12 17390436 17390622 -126891867 + MIR SINE MIR 47 256 -6 1297 196 69 45 chr12 17391021 17391202 -126891287 - MER58B DNA MER1_type -2080 340 146 2215 112 6 6 chr12 17391202 17391515 -126890974 - AluSp SINE Alu 0 313 1 1297 196 69 45 chr12 17391515 17391665 -126890824 - MER58B DNA MER1_type -2274 146 1 353 320 15 89 chr12 17391665 17391868 -126890621 + MIR3 SINE MIR 12 199 -9 25 31 0 0 chr12 17393189 17393221 -126889268 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr12 17393880 17393923 -126888566 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr12 17394712 17394735 -126887754 + AT_rich Low_complexity Low_complexity 1 23 0 940 214 124 10 chr12 17394891 17395181 -126887308 - MER5C DNA MER1_type -1 323 1 1008 299 138 47 chr12 17395371 17396491 -126885998 - L2 LINE L2 0 3272 2027 214 277 0 0 chr12 17397783 17397830 -126884659 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 265 353 43 9 chr12 17398075 17398191 -126884298 + MIR3 SINE MIR 9 128 -80 396 372 68 15 chr12 17398546 17398885 -126883604 + L1MC5 LINE L1 4785 5141 -1005 9879 200 31 33 chr12 17399076 17401595 -126880894 + L1MB2 LINE L1 2865 5388 -783 751 203 0 0 chr12 17401595 17401728 -126880761 + FLAM_C SINE Alu 1 133 0 9879 200 31 33 chr12 17401728 17402472 -126880017 + L1MB2 LINE L1 5388 6132 -39 1620 132 8 0 chr12 17402468 17402711 -126879778 - L1MA5A LINE L1 -409 5888 5644 * 2716 110 42 0 chr12 17402711 17403136 -126879353 + L1MA5A LINE L1 5847 6291 -6 303 95 0 79 chr12 17403193 17403256 -126879233 + L1MB2 LINE L1 6106 6163 -8 1688 249 25 23 chr12 17403256 17403774 -126878715 + L1MC5 LINE L1 5297 5815 -1993 1618 248 56 63 chr12 17403936 17404561 -126877928 + L1MC5 LINE L1 6823 7451 -510 28 0 0 64 chr12 17404561 17404584 -126877905 + AT_rich Low_complexity Low_complexity 1 21 -23 2439 58 0 0 chr12 17404584 17404877 -126877612 + AluY SINE Alu 1 293 -18 28 0 0 64 chr12 17404877 17404900 -126877589 + AT_rich Low_complexity Low_complexity 21 44 0 1618 248 56 63 chr12 17404900 17404920 -126877569 + L1MC5 LINE L1 7451 7470 -491 360 0 0 0 chr12 17404920 17404960 -126877529 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 1618 248 56 63 chr12 17404960 17405103 -126877386 + L1MC5 LINE L1 7470 7652 -309 21 36 0 0 chr12 17405218 17405246 -126877243 + AT_rich Low_complexity Low_complexity 1 28 0 228 214 31 31 chr12 17405329 17405427 -126877062 + L1MC5 LINE L1 7827 7924 -37 559 137 145 34 chr12 17406126 17406243 -126876246 - MER58B DNA MER1_type 0 341 212 713 222 71 0 chr12 17406725 17406986 -126875503 - MLT1E1 LTR MaLR -398 256 1 1378 159 4 26 chr12 17406988 17407258 -126875231 - AluJb SINE Alu 0 350 86 495 197 11 6 chr12 17407268 17407440 -126875049 + CT-rich Low_complexity Low_complexity 1 172 0 753 313 86 29 chr12 17407440 17407788 -126874701 - L2 LINE L2 -1884 1430 1063 688 243 55 93 chr12 17408091 17408457 -126874032 - L1MDa LINE L1 -6133 407 56 1598 254 50 7 chr12 17408482 17409048 -126873441 - L1M4 LINE L1 -810 5336 4747 2529 214 112 17 chr12 17409076 17410089 -126872400 - L1ME1 LINE L1 -5 6161 5053 279 291 39 19 chr12 17410089 17410192 -126872297 - MIR SINE MIR -63 145 41 486 287 50 95 chr12 17410610 17410651 -126871838 - L2 LINE L2 -407 2907 2866 2175 128 22 27 chr12 17410651 17411017 -126871472 + THE1B LTR MaLR 1 364 0 11999 89 5 1 chr12 17411017 17412591 -126869898 + THE1B-int LTR MaLR 1 1580 0 2257 128 19 27 chr12 17412591 17412958 -126869531 + THE1B LTR MaLR 1 364 0 486 287 50 95 chr12 17412958 17413315 -126869174 - L2 LINE L2 -445 2869 2525 1875 171 0 13 chr12 17413490 17413789 -126868700 - AluJo SINE Alu -17 295 1 22 35 0 0 chr12 17415008 17415037 -126867452 + AT_rich Low_complexity Low_complexity 1 29 0 228 194 31 102 chr12 17415607 17415705 -126866784 + CT-rich Low_complexity Low_complexity 5 95 0 1451 179 47 33 chr12 17415740 17416041 -126866448 - AluJb SINE Alu -7 305 1 1527 139 8 4 chr12 17416103 17416340 -126866149 + AluSx SINE Alu 2 239 -73 451 248 40 60 chr12 17416783 17416825 -126865664 - MER5A DNA MER1_type -1 188 147 1530 179 45 70 chr12 17416825 17417199 -126865290 + MLT1A1 LTR MaLR 1 365 0 451 248 40 60 chr12 17417199 17417305 -126865184 - MER5A DNA MER1_type -42 147 43 593 249 103 24 chr12 17417333 17417498 -126864991 + MER5B DNA MER1_type 1 178 0 472 240 23 39 chr12 17418645 17418774 -126863715 - MIR SINE MIR -114 148 22 189 229 0 0 chr12 17419566 17419614 -126862875 + GA-rich Low_complexity Low_complexity 4 51 0 486 268 114 23 chr12 17420081 17420301 -126862188 - MIR SINE MIR -2 260 21 196 339 32 0 chr12 17421637 17421699 -126860790 - MIR SINE MIR -76 132 69 22 0 0 0 chr12 17421736 17421758 -126860731 + AT_rich Low_complexity Low_complexity 1 22 0 290 228 59 10 chr12 17421778 17421879 -126860610 - L1ME4a LINE L1 -7 6114 6009 79 44 0 0 chr12 17421888 17422002 -126860487 + AT_rich Low_complexity Low_complexity 1 114 0 323 296 176 49 chr12 17422129 17422453 -126860036 - L1ME4a LINE L1 -392 5729 5365 547 284 100 26 chr12 17423883 17424154 -126858335 + L2 LINE L2 3016 3306 -7 209 270 43 61 chr12 17424316 17424431 -126858058 + L2 LINE L2 2359 2471 -843 21 0 0 0 chr12 17425086 17425107 -126857382 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 17425136 17425157 -126857332 + (CA)n Simple_repeat Simple_repeat 2 22 0 417 230 0 72 chr12 17426881 17427020 -126855469 + MER94 DNA DNA 6 134 0 2128 116 44 41 chr12 17427213 17427576 -126854913 - THE1B LTR MaLR 0 364 1 6288 25 8 1 chr12 17427997 17428742 -126853747 + L1PA4 LINE L1 5403 6152 -3 329 269 118 8 chr12 17429796 17429915 -126852574 - L1ME4a LINE L1 -262 5859 5728 342 297 28 7 chr12 17429978 17430123 -126852366 - L1ME4a LINE L1 -402 5719 5572 1926 133 133 21 chr12 17431016 17431401 -126851088 + MSTA LTR MaLR 1 428 0 1132 148 81 158 chr12 17431640 17432071 -126850418 + MLT2D LTR ERVL 3 400 -14 275 345 47 18 chr12 17432232 17432403 -126850086 + L2 LINE L2 2302 2477 -837 5018 160 14 39 chr12 17432812 17433140 -126849349 - L1PA16 LINE L1 -13 6153 5818 1914 132 0 0 chr12 17433140 17433406 -126849083 - AluSx SINE Alu -8 304 39 5018 160 14 39 chr12 17433406 17434842 -126847647 - L1PA16 LINE L1 -348 5818 4435 271 143 129 0 chr12 17434845 17434915 -126847574 + MER113 DNA MER1_type? 137 215 -306 633 265 104 19 chr12 17434927 17435138 -126847351 - MIR SINE MIR 0 262 34 368 354 76 56 chr12 17435476 17435872 -126846617 + L2 LINE L2 2852 3255 -17 223 174 0 0 chr12 17436043 17436089 -126846400 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 263 323 126 71 chr12 17436167 17436666 -126845823 - L2 LINE L2 -12 3301 2774 1933 85 22 97 chr12 17436932 17437251 -126845238 - AluYb8 SINE Alu -23 295 1 182 342 129 13 chr12 17437268 17437423 -126845066 - L2 LINE L2 -830 2484 2312 327 85 0 0 chr12 17437455 17437502 -126844987 + (TC)n Simple_repeat Simple_repeat 2 48 0 245 111 0 0 chr12 17437863 17437899 -126844590 - U2 snRNA snRNA -152 36 1 184 71 71 24 chr12 17437901 17437943 -126844546 + (TTAAA)n Simple_repeat Simple_repeat 4 47 0 266 322 99 8 chr12 17438655 17438776 -126843713 + MIR3 SINE MIR 54 185 -23 280 250 29 0 chr12 17439847 17439915 -126842574 - L2 LINE L2 -16 3256 3187 635 315 90 74 chr12 17439997 17441211 -126841278 - L2 LINE L2 -1 3271 2045 5580 73 19 0 chr12 17441551 17442342 -126840147 - L1P LINE L1 -906 5240 4435 271 143 129 0 chr12 17442345 17442415 -126840074 + MER113 DNA MER1_type? 137 215 -306 633 265 104 19 chr12 17442427 17442638 -126839851 - MIR SINE MIR 0 262 34 368 354 76 56 chr12 17442976 17443372 -126839117 + L2 LINE L2 2852 3255 -17 223 174 0 0 chr12 17443543 17443589 -126838900 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 263 323 126 71 chr12 17443667 17444166 -126838323 - L2 LINE L2 -12 3301 2774 2405 56 3 0 chr12 17444432 17444719 -126837770 - AluY SINE Alu -23 288 1 969 26 0 0 chr12 17444930 17445043 -126837446 - AluY SINE Alu -12 299 187 397 332 16 10 chr12 17445052 17445206 -126837283 - MIR SINE MIR -61 147 2 244 233 70 12 chr12 17445300 17445386 -126837103 - MER103 DNA DNA -49 117 27 401 289 56 21 chr12 17445448 17445590 -126836899 + MIR3 SINE MIR 30 176 -32 384 281 74 20 chr12 17445662 17445864 -126836625 + L2 LINE L2 2287 2499 -815 333 328 108 16 chr12 17445864 17446050 -126836439 + MIR SINE MIR 2 204 -58 223 353 72 24 chr12 17446076 17446283 -126836206 + L2 LINE L2 2511 2727 -587 623 273 13 70 chr12 17446488 17446788 -126835701 + MLT1G3 LTR MaLR 1 283 -247 342 214 0 0 chr12 17446816 17446900 -126835589 + (TG)n Simple_repeat Simple_repeat 2 85 0 201 147 0 0 chr12 17448296 17448330 -126834159 + (GA)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr12 17450892 17450912 -126831577 + (A)n Simple_repeat Simple_repeat 1 20 0 277 263 71 59 chr12 17451576 17451736 -126830753 + MIR SINE MIR 44 212 -50 2560 59 0 0 chr12 17451829 17452132 -126830357 - AluY SINE Alu -8 303 1 370 243 138 40 chr12 17452146 17452298 -126830191 - MIR SINE MIR -66 196 30 2386 103 0 0 chr12 17453616 17453926 -126828563 + AluSx SINE Alu 1 310 -2 244 303 91 30 chr12 17453943 17454075 -126828414 + MIR SINE MIR 117 256 -6 209 200 0 0 chr12 17454981 17455021 -126827468 + (ATG)n Simple_repeat Simple_repeat 2 41 0 2160 90 3 27 chr12 17455119 17455418 -126827071 - AluY SINE Alu -19 292 1 211 353 58 13 chr12 17455768 17455898 -126826591 - MIR SINE MIR -78 130 20 189 330 22 33 chr12 17455962 17456053 -126826436 - MER5A DNA MER1_type -45 144 55 1747 171 0 13 chr12 17457059 17457358 -126825131 - AluJo SINE Alu -17 295 1 22 35 0 0 chr12 17458576 17458605 -126823884 + AT_rich Low_complexity Low_complexity 1 29 0 228 194 31 102 chr12 17459175 17459273 -126823216 + CT-rich Low_complexity Low_complexity 5 95 0 1304 183 47 33 chr12 17459308 17459609 -126822880 - AluJb SINE Alu -7 305 1 1446 139 8 4 chr12 17459671 17459908 -126822581 + AluSx SINE Alu 2 239 -73 183 213 64 0 chr12 17460351 17460398 -126822091 - MER5A DNA MER1_type -1 188 139 6011 127 3 3 chr12 17460416 17461269 -126821220 + THE1B-int LTR MaLR 728 1580 0 2288 128 19 27 chr12 17461269 17461636 -126820853 + THE1B LTR MaLR 1 364 0 2397 58 0 10 chr12 17463068 17463376 -126819113 + AluY SINE Alu 1 305 -6 257 190 17 35 chr12 17463563 17463621 -126818868 - MIR SINE MIR 0 262 206 1966 137 0 13 chr12 17465531 17465838 -126816651 - AluJb SINE Alu -9 303 1 30 0 0 0 chr12 17467140 17467170 -126815319 + GC_rich Low_complexity Low_complexity 1 30 0 216 149 0 68 chr12 17467180 17467254 -126815235 + (CCCCCT)n Simple_repeat Simple_repeat 3 71 0 369 189 8 33 chr12 17467352 17467474 -126815015 + C-rich Low_complexity Low_complexity 1 119 0 355 344 62 31 chr12 17467672 17467931 -126814558 + Charlie8 DNA MER1_type 1 267 -2150 2171 119 0 0 chr12 17468018 17468329 -126814160 - AluY SINE Alu 0 311 1 244 260 26 13 chr12 17468470 17468547 -126813942 + (TATATG)n Simple_repeat Simple_repeat 1 78 0 253 248 85 85 chr12 17469413 17469542 -126812947 - MIR SINE MIR 0 262 134 293 254 17 23 chr12 17469634 17469807 -126812682 + CT-rich Low_complexity Low_complexity 2 173 0 252 302 35 35 chr12 17470416 17470532 -126811957 + MIR3 SINE MIR 42 157 -51 378 42 0 0 chr12 17470660 17470708 -126811781 + (TG)n Simple_repeat Simple_repeat 2 49 0 221 149 27 40 chr12 17472245 17472319 -126810170 + CT-rich Low_complexity Low_complexity 4 76 0 22 0 0 0 chr12 17472385 17472407 -126810082 + AT_rich Low_complexity Low_complexity 1 22 0 189 191 83 95 chr12 17472820 17472904 -126809585 - MIR SINE MIR -57 151 69 2222 134 40 12 chr12 17473639 17473968 -126808521 - MER1B DNA MER1_type 0 339 2 590 267 20 0 chr12 17474290 17474440 -126808049 + MIR SINE MIR 12 164 -98 2240 202 39 15 chr12 17474441 17474961 -126807528 + L1 LINE L1 4284 4815 -1331 1635 179 7 0 chr12 17475265 17475555 -126806934 + AluJb SINE Alu 1 292 -20 301 293 196 0 chr12 17475949 17476082 -126806407 - MIR SINE MIR -9 253 95 877 265 194 42 chr12 17476089 17476583 -126805906 - MLT1G1 LTR MaLR -7 588 20 766 238 54 9 chr12 17476664 17476887 -126805602 + AluJb SINE Alu 3 235 -77 832 94 16 8 chr12 17478661 17478788 -126803701 + AluY SINE Alu 169 296 -15 291 220 88 55 chr12 17479393 17479484 -126803005 + MIR SINE MIR 114 207 -55 270 259 19 56 chr12 17479507 17479615 -126802874 - MER94 DNA DNA -30 104 1 1173 160 15 10 chr12 17480234 17480440 -126802049 + L1P LINE L1 4840 5046 -1100 995 155 131 0 chr12 17480550 17480756 -126801733 + AluJb SINE Alu 64 296 -16 2121 116 7 0 chr12 17481033 17481343 -126801146 - AluSx SINE Alu 0 312 1 251 111 0 22 chr12 17482927 17482972 -126799517 + (TTTC)n Simple_repeat Simple_repeat 4 47 0 207 256 23 12 chr12 17483469 17483555 -126798934 + CT-rich Low_complexity Low_complexity 4 90 0 313 320 8 16 chr12 17483654 17483782 -126798707 + CT-rich Low_complexity Low_complexity 2 128 0 669 299 60 40 chr12 17484620 17484921 -126797568 + L2 LINE L2 3005 3311 -2 260 324 0 21 chr12 17485083 17485228 -126797261 + C-rich Low_complexity Low_complexity 2 143 0 235 318 109 75 chr12 17485377 17485616 -126796873 - MIR SINE MIR -4 258 12 244 260 39 0 chr12 17486480 17486557 -126795932 + L1MC4a LINE L1 5539 5618 -503 273 194 65 16 chr12 17486565 17486627 -126795862 + MLT1I LTR MaLR 345 409 0 2003 150 186 42 chr12 17486735 17487182 -126795307 - MLT2B2 LTR ERVL 0 515 5 203 125 0 50 chr12 17488385 17488425 -126794064 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 22 35 0 0 chr12 17488961 17488990 -126793499 + GC_rich Low_complexity Low_complexity 1 29 0 351 203 14 14 chr12 17491592 17491666 -126790823 + MIR SINE MIR 79 152 -110 405 341 105 18 chr12 17491707 17491936 -126790553 - MIR SINE MIR -12 250 2 277 223 85 43 chr12 17492194 17492288 -126790201 + MIR SINE MIR 51 148 -60 2464 186 26 2 chr12 17492910 17493379 -126789110 + L1MC3 LINE L1 7306 7785 0 1234 233 105 34 chr12 17493375 17493899 -126788590 + L1M4 LINE L1 4369 4929 -1217 * 15035 44 20 3 chr12 17494179 17496101 -126786388 + L1P LINE L1 2023 3977 -2169 619 245 19 31 chr12 17496236 17496513 -126785976 - L1ME LINE L1 -692 5472 5197 3545 203 108 5 chr12 17496576 17497599 -126784890 - L1P4 LINE L1 -676 5492 4357 508 215 0 0 chr12 17497603 17497696 -126784793 + MLT1E2 LTR MaLR 526 618 -8 264 91 0 0 chr12 17498392 17498436 -126784053 + (TG)n Simple_repeat Simple_repeat 1 44 0 329 376 27 0 chr12 17498830 17498979 -126783510 + L1MC4a LINE L1 5749 5901 -1907 1155 223 59 0 chr12 17499008 17499281 -126783208 + L1MD2 LINE L1 5854 6142 -217 1102 103 30 12 chr12 17501229 17501394 -126781095 - THE1B LTR MaLR -196 168 1 1963 77 8 0 chr12 17501394 17501653 -126780836 - THE1B-int LTR MaLR 0 1580 1320 219 36 0 0 chr12 17501953 17501981 -126780508 + (CA)n Simple_repeat Simple_repeat 2 29 0 272 297 68 25 chr12 17502847 17502965 -126779524 + MER117 DNA MER1_type 33 155 -42 312 302 47 9 chr12 17503322 17503428 -126779061 - L2 LINE L2 -10 3303 3194 470 335 57 16 chr12 17503697 17503891 -126778598 - MIR SINE MIR -52 210 9 2663 116 88 16 chr12 17504027 17504518 -126777971 - Tigger3(Golem) DNA MER2_type 0 3029 2504 1074 274 47 40 chr12 17505284 17505716 -126776773 - MLT1K LTR MaLR -26 562 58 222 222 0 28 chr12 17506500 17506572 -126775917 + C-rich Low_complexity Low_complexity 5 74 0 292 269 11 32 chr12 17506728 17506821 -126775668 - MLT1K LTR MaLR -52 536 446 239 271 13 13 chr12 17506892 17507047 -126775442 + CT-rich Low_complexity Low_complexity 1 155 0 285 258 32 32 chr12 17507057 17507150 -126775339 - MLT1K LTR MaLR -162 426 334 425 277 34 27 chr12 17507575 17507723 -126774766 - MIR3 SINE MIR -1 207 59 376 257 114 9 chr12 17508506 17508611 -126773878 - L2 LINE L2 0 3313 3198 354 297 28 41 chr12 17508647 17508792 -126773697 + MIR SINE MIR 2 144 -118 339 169 0 0 chr12 17508922 17508993 -126773496 + C-rich Low_complexity Low_complexity 1 71 0 200 86 29 0 chr12 17509034 17509069 -126773420 + (CCCCCA)n Simple_repeat Simple_repeat 4 39 0 241 241 11 23 chr12 17509081 17509168 -126773321 + C-rich Low_complexity Low_complexity 1 86 0 291 301 0 0 chr12 17509259 17509352 -126773137 + C-rich Low_complexity Low_complexity 1 93 0 32 0 0 0 chr12 17509670 17509702 -126772787 + GC_rich Low_complexity Low_complexity 1 32 0 2177 112 0 0 chr12 17510429 17510715 -126771774 - AluSx SINE Alu -13 299 14 316 221 39 0 chr12 17511059 17511136 -126771353 - MLT1A2 LTR MaLR -12 362 283 21 0 0 0 chr12 17511250 17511271 -126771218 + GC_rich Low_complexity Low_complexity 1 21 0 212 374 0 19 chr12 17511282 17511389 -126771100 + C-rich Low_complexity Low_complexity 3 107 0 2210 135 3 35 chr12 17512082 17512430 -126770059 + MER1B DNA MER1_type 1 337 0 597 212 55 20 chr12 17512453 17512599 -126769890 - MLT1K LTR MaLR -81 507 357 23 0 0 0 chr12 17513423 17513446 -126769043 + AT_rich Low_complexity Low_complexity 1 23 0 280 242 11 55 chr12 17513622 17513713 -126768776 - MLT1K LTR MaLR -11 577 491 705 218 20 99 chr12 17513720 17514013 -126768476 + MLT1B LTR MaLR 7 276 -114 242 250 0 0 chr12 17514191 17514353 -126768136 + C-rich Low_complexity Low_complexity 1 162 0 1475 211 32 29 chr12 17514810 17515124 -126767365 + MER63B DNA MER1_type 11 328 -734 2431 57 7 3 chr12 17515124 17515425 -126767064 - AluY SINE Alu -9 302 1 1475 211 32 29 chr12 17515425 17515452 -126767037 + MER63B DNA MER1_type 328 353 -83 270 255 0 59 chr12 17515463 17515565 -126766924 + C-rich Low_complexity Low_complexity 2 97 0 267 269 0 0 chr12 17515579 17515709 -126766780 + C-rich Low_complexity Low_complexity 1 130 0 263 135 40 14 chr12 17515730 17515804 -126766685 + C-rich Low_complexity Low_complexity 4 79 0 2208 170 28 30 chr12 17515959 17516419 -126766070 + MLT1C LTR MaLR 9 467 0 327 274 11 51 chr12 17517513 17517688 -126764801 + MIR SINE MIR 89 256 -6 998 221 135 33 chr12 17517821 17518124 -126764365 + MER102b DNA MER1_type 2 335 -6 1176 174 33 5 chr12 17518150 17518362 -126764127 - MER20 DNA MER1_type -1 218 1 224 240 0 0 chr12 17518455 17518505 -126763984 + L2 LINE L2 3263 3312 -1 193 344 22 11 chr12 17518524 17518614 -126763875 + MIR SINE MIR 59 149 -113 21 0 0 0 chr12 17519703 17519724 -126762765 + AT_rich Low_complexity Low_complexity 1 21 0 203 193 0 60 chr12 17519878 17519961 -126762528 + G-rich Low_complexity Low_complexity 5 82 0 1428 195 4 15 chr12 17520078 17520339 -126762150 - AluJo SINE Alu -54 258 1 818 174 22 0 chr12 17520339 17520477 -126762012 - MER20 DNA MER1_type -73 146 6 366 237 114 41 chr12 17520633 17520852 -126761637 + MIR SINE MIR 20 254 -8 188 163 143 0 chr12 17521327 17521376 -126761113 - L2 LINE L2 -337 2976 2921 1086 216 62 17 chr12 17521409 17521701 -126760788 + L1MA4 LINE L1 5982 6286 -14 548 299 119 18 chr12 17521735 17522063 -126760426 - L2 LINE L2 -719 2595 2235 651 267 40 32 chr12 17522469 17522720 -126759769 + L1ME3A LINE L1 5913 6165 -5 663 248 98 4 chr12 17522868 17523114 -126759375 + MER113 DNA MER1_type? 205 473 -48 416 223 159 9 chr12 17523418 17523651 -126758838 + L2 LINE L2 2479 2746 -568 220 274 16 0 chr12 17524484 17524546 -126757943 - MIR SINE MIR -121 141 79 567 0 0 0 chr12 17524566 17524629 -126757860 + (GA)n Simple_repeat Simple_repeat 1 63 0 241 333 0 0 chr12 17524686 17524746 -126757743 + C-rich Low_complexity Low_complexity 3 62 0 341 255 12 27 chr12 17524751 17525031 -126757458 + CT-rich Low_complexity Low_complexity 1 275 0 232 340 32 0 chr12 17525889 17525983 -126756506 - MER5A DNA MER1_type -3 186 90 333 217 0 0 chr12 17527498 17527567 -126754922 + L1MB1 LINE L1 6088 6156 -33 468 218 224 6 chr12 17529070 17529177 -126753312 + HAL1 LINE L1 1309 1391 -1116 188 45 0 0 chr12 17529177 17529199 -126753290 + (GA)n Simple_repeat Simple_repeat 2 23 0 468 218 224 6 chr12 17529199 17529247 -126753242 + HAL1 LINE L1 1391 1498 -1009 321 283 60 60 chr12 17529994 17530160 -126752329 - LTR33 LTR ERVL -327 194 29 244 125 429 0 chr12 17532113 17532169 -126750320 - MADE1 DNA Mariner 0 80 1 392 322 16 22 chr12 17532175 17532358 -126750131 + L2 LINE L2 2907 3088 -225 634 129 0 0 chr12 17532363 17532448 -126750041 - MER81 DNA DNA 0 114 30 188 341 79 37 chr12 17532471 17532502 -126749987 + L2 LINE L2 3142 3170 -143 273 29 0 0 chr12 17532502 17532536 -126749953 + (CA)n Simple_repeat Simple_repeat 2 35 0 188 341 79 37 chr12 17532536 17532668 -126749821 + L2 LINE L2 3170 3312 -1 3841 127 9 61 chr12 17533506 17533578 -126748911 + MER39B LTR ERV1 3 77 -576 2110 99 4 0 chr12 17533578 17533851 -126748638 + AluSc SINE Alu 21 294 -15 3841 127 9 61 chr12 17533851 17534462 -126748027 + MER39B LTR ERV1 77 650 -3 1006 103 28 0 chr12 17535060 17535205 -126747284 - L1MA6 LINE L1 -546 5754 5606 3276 153 12 14 chr12 17535208 17535772 -126746717 + L1MA6 LINE L1 5738 6300 0 2443 93 0 3 chr12 17536983 17537294 -126745195 - AluSq SINE Alu -3 310 1 410 332 17 10 chr12 17537415 17537594 -126744895 + MIR SINE MIR 15 190 -64 21 0 0 0 chr12 17537782 17537803 -126744686 + AT_rich Low_complexity Low_complexity 1 21 0 2214 98 7 127 chr12 17538822 17539280 -126743209 + L1MA5 LINE L1 5896 6298 -2 518 323 14 32 chr12 17540539 17540756 -126741733 + MLT1J LTR MaLR 53 265 -246 440 250 153 23 chr12 17540827 17541003 -126741486 + MER58C DNA MER1_type 17 215 0 340 265 33 80 chr12 17541007 17541185 -126741304 + MLT1J LTR MaLR 262 470 -21 432 224 0 0 chr12 17541312 17541397 -126741092 - L2 LINE L2 0 3313 3229 262 333 29 14 chr12 17541645 17541783 -126740706 - L1ME3A LINE L1 -11 6159 6020 461 293 110 35 chr12 17541869 17542230 -126740259 - L1ME3A LINE L1 -322 5848 5516 5090 78 6 3 chr12 17542230 17542897 -126739592 - L1PA10 LINE L1 -1 6167 5499 461 293 110 35 chr12 17542897 17543192 -126739297 - L1ME3A LINE L1 -654 5516 5144 1007 181 6 0 chr12 17543336 17543502 -126738987 + FRAM SINE Alu 1 167 -9 432 146 19 19 chr12 17543502 17543660 -126738829 + (TA)n Simple_repeat Simple_repeat 1 158 0 622 305 56 15 chr12 17543668 17544009 -126738480 - L1ME3A LINE L1 -1156 4990 4636 204 146 42 21 chr12 17545816 17545864 -126736625 - L2 LINE L2 -6 3307 3259 1326 251 51 29 chr12 17546122 17546497 -126735992 - LTR10C LTR ERV1 -21 570 188 279 0 0 0 chr12 17546517 17546548 -126735941 + (TA)n Simple_repeat Simple_repeat 2 32 0 255 236 0 0 chr12 17547398 17547453 -126735036 - L2 LINE L2 -5 3308 3254 273 29 0 0 chr12 17548553 17548587 -126733902 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 288 0 0 0 chr12 17548586 17548618 -126733871 + (TG)n Simple_repeat Simple_repeat 2 33 0 1962 77 8 0 chr12 17548917 17549176 -126733313 + THE1B-int LTR MaLR 1320 1580 0 2381 109 19 25 chr12 17549176 17549542 -126732947 + THE1B LTR MaLR 1 364 0 599 169 110 15 chr12 17550064 17550200 -126732289 + L1MA10 LINE L1 6185 6333 -1 618 366 60 53 chr12 17550285 17550561 -126731928 + HERVL LTR ERVL 393 666 -4330 1930 181 25 8 chr12 17550561 17550920 -126731569 - MLT1A1 LTR MaLR 0 365 1 618 366 60 53 chr12 17550920 17551811 -126730678 + HERVL LTR ERVL 666 1568 -3428 1027 273 62 35 chr12 17552007 17552410 -126730079 + HERVL LTR ERVL 3946 4359 -1295 464 311 44 52 chr12 17552487 17552512 -126729977 + HERVL LTR ERVL 4400 4424 -1340 1353 220 70 68 chr12 17552512 17552661 -126729828 + MLT1D LTR MaLR 5 152 -353 2079 93 10 58 chr12 17552661 17552972 -126729517 + AluSx SINE Alu 1 296 -16 1353 220 70 68 chr12 17552972 17553322 -126729167 + MLT1D LTR MaLR 152 505 0 464 311 44 52 chr12 17553322 17553544 -126728945 + HERVL LTR ERVL 4424 4645 -1119 743 317 67 31 chr12 17553769 17554129 -126728360 + HERVL LTR ERVL 4969 5341 -423 461 259 56 25 chr12 17555905 17556102 -126726387 + MIR SINE MIR 12 214 -48 5262 152 19 76 chr12 17556632 17557689 -126724800 - L1MA5 LINE L1 -2 6298 5182 2204 51 0 33 chr12 17557689 17557963 -126724526 - AluY SINE Alu -26 285 21 189 0 0 0 chr12 17557966 17557987 -126724502 + (TTA)n Simple_repeat Simple_repeat 2 22 0 5262 152 19 76 chr12 17557987 17558364 -126724125 - L1MA5 LINE L1 -1120 5180 4922 189 431 0 0 chr12 17558364 17558473 -126724016 + L2 LINE L2 2746 2854 -460 479 245 97 36 chr12 17558632 17558828 -126723661 + L2 LINE L2 3105 3312 -1 824 268 52 20 chr12 17559003 17559253 -126723236 - MIR SINE MIR 0 262 5 333 0 0 0 chr12 17560569 17560606 -126721883 + (CA)n Simple_repeat Simple_repeat 2 38 0 205 319 22 33 chr12 17563142 17563233 -126719256 + MER5A DNA MER1_type 55 144 -45 314 293 57 12 chr12 17563297 17563427 -126719062 + MIR SINE MIR 20 151 -68 2424 65 3 7 chr12 17563777 17564086 -126718403 + AluY SINE Alu 1 308 -3 1359 218 56 6 chr12 17564518 17564857 -126717632 - MLT1A1 LTR MaLR 0 365 10 186 320 16 107 chr12 17566584 17566706 -126715783 + MIR SINE MIR 20 130 -78 467 247 31 66 chr12 17567990 17568191 -126714298 - MIR SINE MIR -6 256 64 266 258 106 30 chr12 17568185 17568317 -126714172 + MIR3 SINE MIR 62 203 -5 * 584 234 53 35 chr12 17568797 17568836 -126713653 - MIR SINE MIR 0 262 225 4913 76 45 1 chr12 17568836 17569495 -126712994 - LTR12 LTR ERV1 0 688 1 584 234 53 35 chr12 17569495 17569626 -126712863 - MIR SINE MIR -37 225 89 216 0 0 0 chr12 17569627 17569651 -126712838 + (TG)n Simple_repeat Simple_repeat 1 24 0 394 250 50 0 chr12 17569674 17569774 -126712715 - MIR SINE MIR -71 191 87 463 0 0 0 chr12 17569826 17569880 -126712609 - LTR12 LTR ERV1 -8 706 653 379 290 0 10 chr12 17571728 17571828 -126710661 + MIR3 SINE MIR 77 175 -33 23 68 0 0 chr12 17571920 17571964 -126710525 + AT_rich Low_complexity Low_complexity 1 44 0 186 189 0 0 chr12 17572292 17572329 -126710160 + (TATG)n Simple_repeat Simple_repeat 4 40 0 451 174 104 0 chr12 17573585 17573799 -126708690 + L1MA4A LINE L1 5981 6278 -25 230 310 19 82 chr12 17574403 17574561 -126707928 - L2 LINE L2 -558 2756 2609 257 254 99 0 chr12 17574985 17575056 -126707433 + MIR SINE MIR 112 189 -73 30 0 0 0 chr12 17576656 17576686 -126705803 + AT_rich Low_complexity Low_complexity 1 30 0 2408 58 7 3 chr12 17576699 17576993 -126705496 + AluY SINE Alu 1 295 -16 342 186 12 0 chr12 17576999 17577085 -126705404 - L1MA4 LINE L1 -6 6294 6208 1393 128 0 0 chr12 17577085 17577311 -126705178 - L1 LINE L1 -1969 4177 3952 698 178 0 23 chr12 17577313 17577442 -126705047 - FLAM_A SINE Alu -11 131 6 228 234 0 0 chr12 17577461 17577525 -126704964 + L1MC4 LINE L1 6640 6703 -1339 * 235 300 0 0 chr12 17577483 17577573 -126704916 - L1MC4 LINE L1 -1339 6703 6614 326 220 0 22 chr12 17577574 17577665 -126704824 + (CATATA)n Simple_repeat Simple_repeat 3 91 0 334 284 23 0 chr12 17577665 17577753 -126704736 + L1MC4 LINE L1 6614 6703 -1339 2804 195 35 5 chr12 17577758 17578087 -126704402 - L1 LINE L1 -2202 3944 3626 237 33 0 0 chr12 17578087 17578117 -126704372 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2804 195 35 5 chr12 17578117 17578417 -126704072 - L1 LINE L1 -2520 3626 3296 1264 189 102 7 chr12 17578418 17578582 -126703907 - AluJo SINE Alu 0 312 165 207 0 0 0 chr12 17578582 17578605 -126703884 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1264 189 102 7 chr12 17578605 17578715 -126703774 - AluJo SINE Alu -147 165 12 4000 185 35 4 chr12 17578718 17579654 -126702835 - L1 LINE L1 -2853 3293 2329 1420 169 22 18 chr12 17579654 17579932 -126702557 + MLT1A1 LTR MaLR 87 365 0 2242 212 72 32 chr12 17579932 17581144 -126701345 - L1ME2 LINE L1 -149 6015 4757 257 273 73 60 chr12 17581258 17581408 -126701081 + MIR SINE MIR 111 262 0 244 260 26 13 chr12 17582274 17582351 -126700138 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 2364 90 0 0 chr12 17582492 17582792 -126699697 + AluY SINE Alu 1 300 -11 180 0 0 0 chr12 17585275 17585295 -126697194 + (A)n Simple_repeat Simple_repeat 1 20 0 293 268 108 57 chr12 17585964 17586121 -126696368 + MIR SINE MIR 48 212 -50 2560 59 0 0 chr12 17586214 17586517 -126695972 - AluY SINE Alu -8 303 1 370 243 138 40 chr12 17586531 17586683 -126695806 - MIR SINE MIR -66 196 30 2386 103 0 0 chr12 17588001 17588311 -126694178 + AluSx SINE Alu 1 310 -2 263 311 83 23 chr12 17588328 17588460 -126694029 + MIR SINE MIR 117 256 -6 209 200 0 0 chr12 17589369 17589409 -126693080 + (ATG)n Simple_repeat Simple_repeat 2 41 0 251 296 44 89 chr12 17589469 17589507 -126692982 - MIR SINE MIR -84 178 140 2231 94 0 23 chr12 17589507 17589806 -126692683 - AluY SINE Alu -19 292 1 251 296 44 89 chr12 17589806 17589902 -126692587 - MIR SINE MIR -122 140 50 2248 119 0 3 chr12 17590231 17590534 -126691955 - AluSx SINE Alu -10 302 1 228 163 0 0 chr12 17591245 17591288 -126691201 + A-rich Low_complexity Low_complexity 1 43 0 2237 103 0 0 chr12 17591678 17591969 -126690520 - AluSx SINE Alu -8 304 14 239 293 65 66 chr12 17592260 17592301 -126690188 - MIR SINE MIR -95 113 73 1682 191 10 57 chr12 17592301 17592684 -126689805 - MLT1A1 LTR MaLR 0 365 1 239 293 65 66 chr12 17592684 17592769 -126689720 - MIR SINE MIR -135 73 20 403 257 86 0 chr12 17592784 17592889 -126689600 - L2 LINE L2 0 3313 3200 1566 165 32 52 chr12 17593730 17594039 -126688450 - AluJo SINE Alu -9 303 1 1744 129 24 86 chr12 17594690 17594942 -126687547 - L1PA16 LINE L1 -84 6082 5865 2301 100 0 3 chr12 17594942 17595241 -126687248 - AluSx SINE Alu -14 298 1 1744 129 24 86 chr12 17595241 17595386 -126687103 - L1PA16 LINE L1 -301 5865 5713 22 0 0 0 chr12 17597011 17597033 -126685456 + AT_rich Low_complexity Low_complexity 1 22 0 261 372 31 0 chr12 17597193 17597322 -126685167 + L3 LINE CR1 1407 1539 -38 1580 165 66 11 chr12 17599140 17599412 -126683077 + AluJo SINE Alu 2 288 -24 1986 249 76 17 chr12 17600911 17601690 -126680799 - L1MC4 LINE L1 -1 8041 7217 237 65 0 0 chr12 17602211 17602242 -126680247 + (CA)n Simple_repeat Simple_repeat 1 31 0 426 39 0 0 chr12 17603102 17603154 -126679335 + (CA)n Simple_repeat Simple_repeat 2 53 0 588 296 65 68 chr12 17605919 17606006 -126676483 - MLT1H LTR MaLR -195 354 268 848 270 9 35 chr12 17606006 17606236 -126676253 + MER58A DNA MER1_type 1 224 0 588 296 65 68 chr12 17606236 17606503 -126675986 - MLT1H LTR MaLR -281 268 1 256 333 42 42 chr12 17607135 17607279 -126675210 + MIR3 SINE MIR 52 195 -13 371 221 32 32 chr12 17607768 17607863 -126674626 - L2 LINE L2 0 3313 3219 1836 165 22 25 chr12 17607941 17608299 -126674190 + MER58D DNA MER1_type 1 357 -29 3153 162 19 4 chr12 17608299 17609307 -126673182 + L1MA4 LINE L1 4781 5803 -497 238 126 44 66 chr12 17609313 17609496 -126672993 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 2435 169 41 8 chr12 17609515 17610007 -126672482 + L1MA4 LINE L1 5779 6286 -14 25 0 0 0 chr12 17610019 17610044 -126672445 + AT_rich Low_complexity Low_complexity 1 25 0 235 116 139 0 chr12 17610058 17610101 -126672388 + MER58D DNA MER1_type 338 386 0 711 274 12 37 chr12 17611057 17611302 -126671187 + L1MC4a LINE L1 5629 5867 -1941 1692 185 3 0 chr12 17611364 17611650 -126670839 - AluJo SINE Alu -21 291 5 231 323 102 32 chr12 17611718 17612285 -126670204 + L1MC4a LINE L1 6047 6653 -1155 374 185 22 43 chr12 17612288 17612380 -126670109 + L1MC5 LINE L1 6774 6863 -1098 205 286 29 0 chr12 17612454 17612524 -126669965 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 21 36 0 0 chr12 17612561 17612589 -126669900 + AT_rich Low_complexity Low_complexity 1 28 0 1424 241 99 55 chr12 17612611 17613460 -126669029 + L1MC5 LINE L1 7045 7930 -31 44341 36 3 2 chr12 17613619 17619766 -126662723 - L1PA4 LINE L1 0 6155 3 21 0 0 0 chr12 17619884 17619905 -126662584 + AT_rich Low_complexity Low_complexity 1 21 0 2299 117 3 0 chr12 17619924 17620232 -126662257 - AluSp SINE Alu -2 311 3 1449 224 64 43 chr12 17620708 17621146 -126661343 + MLT1C LTR MaLR 21 467 0 2271 169 35 24 chr12 17623164 17623590 -126658899 + MER44D DNA MER2_type 1 486 -119 343 82 0 129 chr12 17623608 17623685 -126658804 + MER44D DNA MER2_type 454 521 -1966 2906 180 39 19 chr12 17623685 17624004 -126658485 + MER7C DNA MER2_type 1 339 -2689 2406 61 3 0 chr12 17624004 17624298 -126658191 - AluY SINE Alu -16 295 1 2906 180 39 19 chr12 17624298 17624568 -126657921 + MER7C DNA MER2_type 339 602 0 593 53 13 0 chr12 17624580 17624656 -126657833 - MADE1 DNA Mariner 0 80 4 1414 89 61 0 chr12 17624656 17624869 -126657620 - Tigger3(Golem) DNA MER2_type -174 2855 2630 283 192 0 0 chr12 17624873 17624925 -126657564 - Tigger3(Golem) DNA MER2_type -2825 204 153 317 271 25 0 chr12 17624959 17625052 -126657437 + Tigger7 DNA MER2_type 639 2487 0 303 230 0 14 chr12 17625107 17625181 -126657308 - MER5C DNA MER1_type -200 124 52 334 260 0 10 chr12 17626612 17626716 -126655773 - MER69 DNA AcHobo 0 2526 2424 5690 135 9 24 chr12 17626797 17627614 -126654875 - L1PA14 LINE L1 -33 6128 5336 3209 54 7 19 chr12 17627614 17628042 -126654447 - L1PA8 LINE L1 0 6172 5750 5690 135 9 24 chr12 17628042 17628666 -126653823 - L1PA14 LINE L1 -825 5336 4704 731 231 141 12 chr12 17628694 17628950 -126653539 - MER69 DNA AcHobo -232 2294 2006 367 362 7 0 chr12 17628947 17629085 -126653404 - MER69 DNA AcHobo -659 567 429 * 214 258 0 0 chr12 17629194 17629260 -126653229 + (TA)n Simple_repeat Simple_repeat 1 66 0 236 242 24 40 chr12 17629260 17629384 -126653105 + L1MC4 LINE L1 6613 6734 -1308 1272 245 30 13 chr12 17629417 17629715 -126652774 - MER69 DNA AcHobo -2217 309 7 968 288 65 24 chr12 17630336 17630840 -126651649 - L1ME LINE L1 -345 5800 5276 946 133 0 22 chr12 17630870 17631050 -126651439 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 2031 137 3 16 chr12 17631063 17631370 -126651119 - AluSx SINE Alu -9 303 1 382 304 127 19 chr12 17631370 17631889 -126650600 - L1ME LINE L1 -837 5292 4718 4955 92 29 3 chr12 17631901 17632254 -126650235 - L1PB1 LINE L1 -4 6147 5805 225 0 0 0 chr12 17632254 17632279 -126650210 + (TA)n Simple_repeat Simple_repeat 1 25 0 198 0 0 0 chr12 17632278 17632300 -126650189 + (CA)n Simple_repeat Simple_repeat 2 23 0 * 4955 92 29 3 chr12 17632279 17632665 -126649824 - L1PB1 LINE L1 -346 5805 5410 6785 200 11 19 chr12 17632665 17634196 -126648293 + L1PB1 LINE L1 3897 5421 -743 48 0 0 0 chr12 17634293 17634341 -126648148 + AT_rich Low_complexity Low_complexity 1 48 0 310 198 168 20 chr12 17634390 17634491 -126647998 - L1ME LINE L1 -1535 4594 4479 237 204 0 0 chr12 17637550 17637594 -126644895 + CT-rich Low_complexity Low_complexity 2 45 0 383 320 17 23 chr12 17639171 17639343 -126643146 - L1ME LINE L1 -2866 3263 3093 186 43 0 0 chr12 17639388 17639411 -126643078 + (TAAAAA)n Simple_repeat Simple_repeat 1 23 0 30 45 0 0 chr12 17639414 17639458 -126643031 + AT_rich Low_complexity Low_complexity 1 44 0 1370 273 65 57 chr12 17639547 17639985 -126642504 - L1MEc LINE L1 -3083 3046 2613 490 91 39 0 chr12 17639985 17640062 -126642427 + MADE1 DNA Mariner 1 80 0 1370 273 65 57 chr12 17640062 17640083 -126642406 - L1MEc LINE L1 -3516 2613 2594 2233 139 21 19 chr12 17640083 17640457 -126642032 - THE1C LTR MaLR 0 375 1 1370 273 65 57 chr12 17640457 17640984 -126641505 - L1MEc LINE L1 -3535 2594 2092 21 0 0 0 chr12 17641012 17641033 -126641456 + AT_rich Low_complexity Low_complexity 1 21 0 1310 217 23 26 chr12 17641407 17641757 -126640732 + L1PA14 LINE L1 2892 3240 -2906 10029 177 20 19 chr12 17641759 17644225 -126638264 + L1PA14 LINE L1 3358 5831 -330 2465 91 0 0 chr12 17644225 17644532 -126637957 + AluSc SINE Alu 1 307 -2 10029 177 20 19 chr12 17644532 17644851 -126637638 + L1PA14 LINE L1 5831 6148 -13 235 284 55 8 chr12 17644863 17644990 -126637499 - L1MEc LINE L1 -4606 1523 1391 412 334 46 26 chr12 17645133 17645483 -126637006 - L1MEc LINE L1 -4902 1217 861 279 114 0 0 chr12 17645736 17645780 -126636709 + (TG)n Simple_repeat Simple_repeat 1 44 0 266 331 178 12 chr12 17645829 17645992 -126636497 - LTR40b LTR ERVL -98 364 175 235 386 9 0 chr12 17646786 17646900 -126635589 + L2 LINE L2 2511 2625 -689 357 179 46 6 chr12 17647012 17647185 -126635304 + (TA)n Simple_repeat Simple_repeat 1 180 0 321 313 104 66 chr12 17647226 17647801 -126634688 + L2 LINE L2 2705 3312 -1 736 340 19 4 chr12 17648271 17648527 -126633962 + MIR SINE MIR 3 262 0 258 275 217 0 chr12 17648634 17648772 -126633717 + MIR SINE MIR 18 185 -77 2457 109 43 3 chr12 17648995 17649345 -126633144 + THE1B LTR MaLR 1 364 0 24 32 0 0 chr12 17650528 17650559 -126631930 + AT_rich Low_complexity Low_complexity 1 31 0 2349 81 0 34 chr12 17650827 17650865 -126631624 - AluY SINE Alu -2 309 271 239 71 24 0 chr12 17650865 17650907 -126631582 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2349 81 0 34 chr12 17650907 17651188 -126631301 - AluY SINE Alu -40 271 1 2199 107 0 3 chr12 17651214 17651504 -126630985 + AluSq SINE Alu 1 289 -24 2240 180 7 31 chr12 17651850 17652295 -126630194 + Tigger2a DNA MER2_type 1 434 0 31 44 0 0 chr12 17652367 17652412 -126630077 + AT_rich Low_complexity Low_complexity 1 45 0 1246 219 134 12 chr12 17652870 17653198 -126629291 - MLT1A2 LTR MaLR -6 368 1 2018 147 18 54 chr12 17653559 17653948 -126628541 - THE1C LTR MaLR 0 375 1 488 311 76 7 chr12 17654618 17654812 -126627677 - MIR SINE MIR -54 208 2 750 282 82 5 chr12 17655101 17655321 -126627168 + MIR SINE MIR 19 255 -7 1053 259 97 35 chr12 17656931 17657301 -126625188 - LTR16A LTR ERVL -6 444 52 270 322 11 0 chr12 17657423 17657513 -126624976 - HERV16 LTR ERVL -100 4896 4806 560 341 14 5 chr12 17657688 17657905 -126624584 - HERV16 LTR ERVL -667 5097 4879 1039 326 73 47 chr12 17658003 17658659 -126623830 - HERV16 LTR ERVL -1037 4727 4055 322 313 60 0 chr12 17658728 17658862 -126623627 - HERV16 LTR ERVL -1428 3568 3427 1595 277 135 9 chr12 17659137 17659715 -126622774 - L1MEc LINE L1 -5678 718 68 291 329 0 0 chr12 17659729 17659811 -126622678 - HERV16 LTR ERVL -3018 1978 1897 225 300 117 42 chr12 17660527 17660647 -126621842 + L2 LINE L2 3136 3264 -8 1711 154 14 14 chr12 17661764 17662057 -126620432 - AluSx SINE Alu -18 294 2 216 289 42 56 chr12 17662460 17662602 -126619887 + L2 LINE L2 2598 2737 -577 21 0 0 0 chr12 17662951 17662972 -126619517 + AT_rich Low_complexity Low_complexity 1 21 0 2246 54 9 66 chr12 17663144 17663461 -126619028 + AluY SINE Alu 1 299 -12 221 375 0 0 chr12 17663485 17663565 -126618924 - L2 LINE L2 0 3313 3234 2005 144 3 0 chr12 17663863 17664155 -126618334 - AluSx SINE Alu -19 293 1 23 54 0 0 chr12 17664256 17664293 -126618196 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr12 17664653 17664674 -126617815 + AT_rich Low_complexity Low_complexity 1 21 0 327 304 66 53 chr12 17665856 17665985 -126616504 - HAL1 LINE L1 -1304 1203 1068 13518 138 36 25 chr12 17665985 17668378 -126614111 - Tigger1 DNA MER2_type 0 2418 1 327 304 66 53 chr12 17668378 17668491 -126613998 - HAL1 LINE L1 -1439 1068 958 477 0 0 0 chr12 17669153 17669206 -126613283 + (CA)n Simple_repeat Simple_repeat 2 54 0 1615 234 11 86 chr12 17669217 17669431 -126613058 - MLT2B1 LTR ERVL -2 518 290 3618 75 0 0 chr12 17669431 17669884 -126612605 - MLT2A2 LTR ERVL 0 453 1 1615 234 11 86 chr12 17669884 17670229 -126612260 - MLT2B1 LTR ERVL -230 290 1 208 179 26 0 chr12 17670647 17670686 -126611803 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 189 0 0 0 chr12 17670916 17670937 -126611552 + (TG)n Simple_repeat Simple_repeat 2 22 0 239 288 25 12 chr12 17671080 17671160 -126611329 + CT-rich Low_complexity Low_complexity 1 81 0 213 186 105 93 chr12 17671546 17671632 -126610857 - L2 LINE L2 -4 3309 3223 22 35 0 0 chr12 17671660 17671689 -126610800 + AT_rich Low_complexity Low_complexity 1 29 0 281 278 83 28 chr12 17672685 17672793 -126609696 - L2 LINE L2 -8 3305 3192 246 333 46 28 chr12 17672905 17673013 -126609476 + L2 LINE L2 3199 3308 -5 868 299 15 11 chr12 17673086 17673347 -126609142 - MIR SINE MIR 0 262 1 258 32 0 0 chr12 17676720 17676751 -126605738 + (CA)n Simple_repeat Simple_repeat 2 32 0 1928 270 102 28 chr12 17676751 17677637 -126604852 - L1ME3 LINE L1 -29 6133 5187 5742 197 32 5 chr12 17677637 17679254 -126603235 - L1MC1 LINE L1 -1 6401 4736 826 290 77 21 chr12 17679324 17680050 -126602439 - L1MC1 LINE L1 -3483 2732 2008 4432 321 77 45 chr12 17680367 17684123 -126598366 - HERV16 LTR ERVL -1130 4355 493 2000 196 65 7 chr12 17685549 17685952 -126596537 - MSTB LTR MaLR 0 426 1 201 244 0 0 chr12 17686233 17686278 -126596211 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 342 0 0 0 chr12 17687313 17687351 -126595138 + (TG)n Simple_repeat Simple_repeat 2 39 0 297 280 10 40 chr12 17689037 17689137 -126593352 - MIR SINE MIR -16 246 150 222 231 0 0 chr12 17689922 17689974 -126592515 + (TA)n Simple_repeat Simple_repeat 1 52 0 2269 196 42 2 chr12 17690016 17690465 -126592024 - MLT1C LTR MaLR 0 467 1 401 246 134 15 chr12 17690498 17690632 -126591857 - MIR3 SINE MIR -12 196 47 21 36 0 0 chr12 17690832 17690860 -126591629 + AT_rich Low_complexity Low_complexity 1 28 0 502 346 42 0 chr12 17690899 17691113 -126591376 - MIR SINE MIR -39 223 1 288 0 0 0 chr12 17691346 17691378 -126591111 + (A)n Simple_repeat Simple_repeat 1 32 0 591 264 20 0 chr12 17691669 17691817 -126590672 - MIR SINE MIR 0 262 112 183 267 156 0 chr12 17691928 17691973 -126590516 + L2 LINE L2 3212 3263 -9 187 340 0 0 chr12 17692555 17692605 -126589884 - L2 LINE L2 -16 3297 3248 28 0 0 0 chr12 17692612 17692640 -126589849 + AT_rich Low_complexity Low_complexity 1 28 0 205 189 57 0 chr12 17693724 17693777 -126588712 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 21 36 0 0 chr12 17696000 17696028 -126586461 + AT_rich Low_complexity Low_complexity 1 28 0 566 277 38 6 chr12 17696476 17696635 -126585854 + MIR SINE MIR 99 262 0 26 30 0 0 chr12 17697071 17697104 -126585385 + AT_rich Low_complexity Low_complexity 1 33 0 317 311 23 53 chr12 17699202 17699334 -126583155 - MIR SINE MIR -64 144 17 752 193 31 37 chr12 17699662 17699823 -126582666 - FRAM SINE Alu -17 159 1 1222 82 6 0 chr12 17699909 17700079 -126582410 + L1PA11 LINE L1 5999 6169 -5 324 318 131 28 chr12 17700453 17700667 -126581822 + MIR SINE MIR 9 244 -18 373 290 91 34 chr12 17701111 17701287 -126581202 - MLT1J2 LTR MaLR -24 426 241 2466 121 162 22 chr12 17701859 17702323 -126580166 + MER1A DNA MER1_type 1 529 0 379 214 71 79 chr12 17702629 17702755 -126579734 - MLT1J2 LTR MaLR -259 150 26 196 225 0 0 chr12 17705138 17705178 -126577311 + L2 LINE L2 3263 3302 -11 445 207 40 87 chr12 17705203 17705353 -126577136 + MLT1J LTR MaLR 4 146 -365 2205 119 0 16 chr12 17705652 17705962 -126576527 - AluSx SINE Alu -7 305 1 21 95 0 0 chr12 17707219 17707282 -126575207 + AT_rich Low_complexity Low_complexity 1 63 0 22 0 0 0 chr12 17707867 17707889 -126574600 + AT_rich Low_complexity Low_complexity 1 22 0 294 73 0 0 chr12 17708379 17708420 -126574069 + (CA)n Simple_repeat Simple_repeat 1 41 0 734 200 45 73 chr12 17709631 17709851 -126572638 + MER20 DNA MER1_type 4 217 -2 1005 181 0 17 chr12 17710208 17710385 -126572104 + AluJb SINE Alu 137 310 -2 199 254 34 51 chr12 17712276 17712335 -126570154 - L2 LINE L2 -10 3303 3246 285 301 62 18 chr12 17712913 17713026 -126569463 - L2 LINE L2 -5 3267 3150 2267 108 0 0 chr12 17714505 17714801 -126567688 - AluSc SINE Alu -13 296 1 21 36 0 0 chr12 17715010 17715038 -126567451 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr12 17715130 17715173 -126567316 + AT_rich Low_complexity Low_complexity 1 43 0 1704 149 56 83 chr12 17715282 17715678 -126566811 - L1MB5 LINE L1 -8 6166 5782 2495 50 7 0 chr12 17715709 17716007 -126566482 - AluY SINE Alu -11 300 1 1752 175 0 7 chr12 17716009 17716306 -126566183 - AluJo SINE Alu -14 298 4 448 193 0 0 chr12 17716306 17716389 -126566100 - L1MC1 LINE L1 -15 6318 6236 1303 198 26 40 chr12 17716440 17716616 -126565873 + L1M4 LINE L1 4993 5163 -983 2275 111 0 3 chr12 17716616 17716914 -126565575 - AluSc SINE Alu -12 297 1 1303 198 26 40 chr12 17716914 17717086 -126565403 + L1M4 LINE L1 5163 5336 -810 809 201 21 107 chr12 17717147 17717262 -126565227 - MER58C DNA MER1_type -2205 215 92 633 183 26 0 chr12 17717262 17717377 -126565112 + FLAM_C SINE Alu 1 118 -15 189 74 0 0 chr12 17717380 17717407 -126565082 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 809 201 21 107 chr12 17717407 17717521 -126564968 - MER58C DNA MER1_type -2330 90 2 410 312 40 40 chr12 17717616 17717815 -126564674 + L1MEd LINE L1 535 733 -5472 759 289 48 29 chr12 17717975 17718499 -126563990 + L1MEd LINE L1 938 1339 -4866 274 275 150 6 chr12 17718540 17718707 -126563782 + L1MEd LINE L1 1565 1755 -4641 2137 122 0 0 chr12 17718824 17719120 -126563369 + AluSg SINE Alu 1 296 -14 734 282 73 63 chr12 17719999 17720520 -126561969 + L1MEd LINE L1 2379 2904 -3311 230 56 28 0 chr12 17720869 17720905 -126561584 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1884 155 118 45 chr12 17720911 17721310 -126561179 - MSTA LTR MaLR 0 428 1 594 313 60 30 chr12 17721407 17721771 -126560718 + L2 LINE L2 1793 2167 -1147 391 244 73 24 chr12 17721781 17721904 -126560585 - MER3 DNA MER1_type -7 202 74 326 254 15 46 chr12 17721965 17722095 -126560394 - L1MEd LINE L1 -4865 1254 1129 370 286 41 23 chr12 17722129 17722395 -126560094 + L1MEd LINE L1 2949 3219 -2996 849 335 76 16 chr12 17722408 17722844 -126559645 + L2 LINE L2 2850 3311 -2 335 313 79 51 chr12 17723771 17723985 -126558504 + L1MEd LINE L1 3575 3794 -2421 1310 121 5 47 chr12 17724130 17724345 -126558144 - AluJo SINE Alu -23 289 84 231 301 44 48 chr12 17724506 17724712 -126557777 + HAL1 LINE L1 2303 2507 0 271 334 142 22 chr12 17724727 17725037 -126557452 + L2 LINE L2 2727 3059 -213 30 77 0 0 chr12 17725126 17725191 -126557298 + AT_rich Low_complexity Low_complexity 1 65 0 1392 208 7 18 chr12 17725301 17725625 -126556864 + AluJo SINE Alu 3 323 0 232 293 40 0 chr12 17726110 17726185 -126556304 - MIR SINE MIR -124 138 61 1022 261 28 47 chr12 17726381 17726454 -126556035 + MLT1I LTR MaLR 98 171 -238 1761 185 3 3 chr12 17726454 17726757 -126555732 + AluJo SINE Alu 1 303 -9 1022 261 28 47 chr12 17726757 17727001 -126555488 + MLT1I LTR MaLR 171 409 0 350 339 144 6 chr12 17727069 17727249 -126555240 - MIR SINE MIR -27 235 31 230 347 89 8 chr12 17727874 17727998 -126554491 + MIR3 SINE MIR 2 135 -73 417 342 33 41 chr12 17729410 17729653 -126552836 + MLT1K LTR MaLR 137 377 -211 690 240 63 0 chr12 17729804 17729979 -126552510 + MER5A DNA MER1_type 4 189 0 266 333 53 38 chr12 17731439 17731571 -126550918 + MIR SINE MIR 26 159 -103 1652 174 22 6 chr12 17731633 17731955 -126550534 + L1PA16 LINE L1 5838 6164 -2 476 303 51 63 chr12 17732454 17732867 -126549622 + L1ME2 LINE L1 5471 5878 -286 1443 134 50 23 chr12 17732955 17733216 -126549273 - L1PA16 LINE L1 -9 6157 5890 318 250 107 79 chr12 17734249 17734389 -126548100 - MER5A DNA MER1_type -3 186 43 230 236 36 0 chr12 17737131 17737186 -126545303 + L2 LINE L2 3254 3310 -3 2072 112 26 10 chr12 17737297 17737600 -126544889 + AluSc SINE Alu 1 308 -1 22 35 0 0 chr12 17738231 17738260 -126544229 + AT_rich Low_complexity Low_complexity 1 29 0 29 78 0 0 chr12 17738347 17738411 -126544078 + AT_rich Low_complexity Low_complexity 1 64 0 21 36 0 0 chr12 17738970 17738998 -126543491 + AT_rich Low_complexity Low_complexity 1 28 0 2611 190 0 30 chr12 17740061 17740560 -126541929 + MER66B LTR ERV1 3 486 0 669 292 60 17 chr12 17742279 17742512 -126539977 - MER102b DNA MER1_type -3 338 96 1649 226 80 23 chr12 17742545 17742982 -126539507 - LTR40b LTR ERVL 0 462 1 498 243 100 0 chr12 17743055 17743195 -126539294 + MER58A DNA MER1_type 3 156 0 276 328 93 98 chr12 17743333 17743784 -126538705 - L2 LINE L2 -8 3264 2816 2134 120 141 8 chr12 17744001 17744369 -126538120 - MSTA LTR MaLR -11 417 1 215 423 39 0 chr12 17744568 17744672 -126537817 + L2 LINE L2 3146 3253 -19 225 65 0 0 chr12 17744680 17744711 -126537778 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 191 361 12 36 chr12 17744921 17745004 -126537485 + L2 LINE L2 3187 3267 -5 397 291 168 17 chr12 17746372 17746551 -126535938 + MIR SINE MIR 57 262 0 198 230 23 11 chr12 17746745 17746832 -126535657 + GA-rich Low_complexity Low_complexity 1 88 0 21 71 0 0 chr12 17747570 17747612 -126534877 + AT_rich Low_complexity Low_complexity 1 42 0 218 200 0 0 chr12 17749586 17749626 -126532863 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 1952 110 76 0 chr12 17751843 17752134 -126530355 + AluSq SINE Alu 1 313 0 354 350 38 6 chr12 17752920 17753080 -126529409 + MIR3 SINE MIR 32 196 -12 1783 200 96 3 chr12 17753694 17754049 -126528440 + MSTD LTR MaLR 1 388 -8 247 191 0 0 chr12 17754060 17754102 -126528387 + MSTD LTR MaLR 355 396 0 819 343 89 28 chr12 17754556 17755121 -126527368 + L2 LINE L2 2717 3309 -4 450 291 146 28 chr12 17755513 17755726 -126526763 + MIR SINE MIR 1 238 -24 246 325 72 0 chr12 17756610 17756693 -126525796 - MIR3 SINE MIR -17 191 103 188 366 98 22 chr12 17756803 17756986 -126525503 - L2 LINE L2 -86 3186 2990 324 325 79 16 chr12 17759706 17759832 -126522657 + MIR SINE MIR 18 151 -57 490 287 120 35 chr12 17760131 17760448 -126522041 - MARNA DNA Mariner -233 353 10 262 319 14 0 chr12 17761407 17761476 -126521013 - MIR SINE MIR -71 191 122 7750 12 0 0 chr12 17761622 17762742 -126519747 - L1PA3 LINE L1 0 6155 5030 259 306 105 16 chr12 17762746 17762870 -126519619 - MIR3 SINE MIR -63 145 11 22 0 0 0 chr12 17763688 17763710 -126518779 + AT_rich Low_complexity Low_complexity 1 22 0 215 324 83 66 chr12 17764343 17764519 -126517970 - MIR SINE MIR -70 138 16 273 355 57 72 chr12 17765862 17766127 -126516362 + L2 LINE L2 3008 3268 -4 234 0 0 0 chr12 17767630 17767656 -126514833 + (A)n Simple_repeat Simple_repeat 1 26 0 752 115 33 8 chr12 17767978 17768100 -126514389 + FRAM SINE Alu 30 154 -22 412 368 54 28 chr12 17770172 17770583 -126511906 - L2 LINE L2 -107 3165 2753 463 299 142 18 chr12 17772222 17772503 -126509986 + L3b LINE CR1 1102 1417 -166 381 22 0 0 chr12 17772546 17772592 -126509897 + (TG)n Simple_repeat Simple_repeat 2 47 0 2250 114 17 8 chr12 17773030 17773382 -126509107 - THE1A LTR MaLR 0 355 1 11214 104 7 0 chr12 17773382 17774951 -126507538 - THE1A-int LTR MaLR 0 1580 1 2124 129 8 36 chr12 17774951 17775079 -126507410 - THE1A LTR MaLR 0 355 225 2464 66 0 0 chr12 17775079 17775381 -126507108 - AluY SINE Alu -9 302 1 2124 129 8 36 chr12 17775381 17775617 -126506872 - THE1A LTR MaLR -130 225 1 24 32 0 0 chr12 17775715 17775746 -126506743 + AT_rich Low_complexity Low_complexity 1 31 0 849 199 0 0 chr12 17776748 17776899 -126505590 - AluJb SINE Alu -14 298 148 1760 139 73 0 chr12 17777122 17777410 -126505079 + AluSx SINE Alu 1 309 -3 236 250 0 17 chr12 17778751 17778811 -126503678 - MLT1J LTR MaLR -451 60 2 283 317 113 68 chr12 17779394 17779659 -126502830 + L2 LINE L2 2990 3266 -6 460 308 55 28 chr12 17780052 17780234 -126502255 - MIR SINE MIR -28 234 48 387 0 0 0 chr12 17780695 17780738 -126501751 + (CA)n Simple_repeat Simple_repeat 2 44 0 22 70 0 0 chr12 17781481 17781524 -126500965 + AT_rich Low_complexity Low_complexity 1 43 0 390 262 252 0 chr12 17782412 17782618 -126499871 + MIR SINE MIR 5 262 0 230 239 0 0 chr12 17784081 17784127 -126498362 + L2 LINE L2 3225 3270 -2 298 348 64 42 chr12 17789551 17789787 -126492702 - MIR SINE MIR -3 259 19 743 230 40 50 chr12 17791186 17791211 -126491278 + MIR SINE MIR 29 53 -209 1543 54 0 27 chr12 17791211 17791435 -126491054 - AluY SINE Alu -93 218 1 743 230 40 50 chr12 17791435 17791609 -126490880 + MIR SINE MIR 53 226 -36 397 278 138 64 chr12 17793675 17793999 -126488490 + L1ME4a LINE L1 5290 5617 -504 385 342 41 22 chr12 17794179 17794384 -126488105 - MIR SINE MIR -44 218 16 261 261 53 63 chr12 17794534 17794833 -126487656 + L1ME4a LINE L1 5822 6117 -4 462 284 103 58 chr12 17795287 17795530 -126486959 - MIR SINE MIR -4 258 5 583 296 6 45 chr12 17795845 17796021 -126486468 - MIR3 SINE MIR -25 183 15 1706 150 7 36 chr12 17796146 17796453 -126486036 + AluJo SINE Alu 5 302 -10 29 28 0 0 chr12 17796467 17796503 -126485986 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr12 17798535 17798557 -126483932 + AT_rich Low_complexity Low_complexity 1 22 0 1361 219 4 14 chr12 17801282 17801560 -126480929 - AluJo SINE Alu -35 277 3 4169 132 24 28 chr12 17802189 17802457 -126480032 + L1MA6 LINE L1 5516 5784 -516 513 0 0 0 chr12 17802457 17802514 -126479975 + (TA)n Simple_repeat Simple_repeat 1 57 0 4169 132 24 28 chr12 17802514 17803028 -126479461 + L1MA6 LINE L1 5784 6295 -5 1656 112 0 5 chr12 17803447 17803702 -126478787 + AluSq SINE Alu 62 315 0 1149 177 67 41 chr12 17804947 17805263 -126477226 + MER33 DNA MER1_type 1 324 0 210 333 56 0 chr12 17805688 17805760 -126476729 - MIR3 SINE MIR -119 89 14 720 12 0 0 chr12 17807432 17807516 -126474973 + L1PA3 LINE L1 6068 6151 -4 21 0 0 0 chr12 17807550 17807571 -126474918 + AT_rich Low_complexity Low_complexity 1 21 0 334 270 63 8 chr12 17807976 17808102 -126474387 - MER94 DNA DNA -1 133 1 198 0 0 0 chr12 17808813 17808835 -126473654 + (T)n Simple_repeat Simple_repeat 1 22 0 206 102 85 0 chr12 17809140 17809199 -126473290 + (TA)n Simple_repeat Simple_repeat 1 64 0 264 295 58 98 chr12 17811244 17811417 -126471072 - MIR SINE MIR -65 143 21 756 242 41 5 chr12 17811955 17812149 -126470340 - MIR SINE MIR -1 261 61 252 266 63 91 chr12 17813982 17814125 -126468364 - L2 LINE L2 -16 3297 3159 194 178 44 0 chr12 17814202 17814247 -126468242 + L2 LINE L2 2717 2763 -551 464 156 0 21 chr12 17814366 17814462 -126468027 + MER53 DNA DNA 94 187 -2 2096 106 0 0 chr12 17815009 17815333 -126467156 + AluSx SINE Alu 1 324 0 269 268 89 48 chr12 17816191 17816359 -126466130 + L1MC5 LINE L1 7049 7223 -738 230 321 89 12 chr12 17816389 17816557 -126465932 + L1MC4a LINE L1 7170 7350 -458 759 160 0 15 chr12 17816607 17816738 -126465751 - FLAM_A SINE Alu -4 129 1 364 290 101 32 chr12 17816741 17817061 -126465428 + L1MC4 LINE L1 7312 7749 -293 363 282 105 24 chr12 17817097 17817306 -126465183 + L1ME4a LINE L1 5879 6104 -17 505 282 87 29 chr12 17817696 17817902 -126464587 + MIR SINE MIR 1 218 -44 401 306 0 9 chr12 17817935 17818046 -126464443 + L2 LINE L2 3190 3299 -14 475 328 86 14 chr12 17818412 17818924 -126463565 - L1M4 LINE L1 -1932 4214 3666 419 360 118 28 chr12 17818964 17819239 -126463250 - L2 LINE L2 -961 2353 2104 2241 103 3 0 chr12 17819239 17819540 -126462949 + AluSx SINE Alu 1 302 -10 419 360 118 28 chr12 17819540 17820080 -126462409 - L2 LINE L2 -1210 2104 1465 241 323 74 117 chr12 17820617 17820967 -126461522 - L2 LINE L2 -2726 588 254 431 286 101 30 chr12 17821472 17821640 -126460849 + Charlie8 DNA MER1_type 87 266 -2151 28 71 0 0 chr12 17824676 17824732 -126457757 + AT_rich Low_complexity Low_complexity 1 56 0 183 305 116 66 chr12 17825097 17825356 -126457133 - L3b LINE CR1 -149 1434 1163 195 340 58 0 chr12 17825457 17825560 -126456929 - MIR SINE MIR -115 147 39 21 36 0 0 chr12 17825947 17825975 -126456514 + AT_rich Low_complexity Low_complexity 1 28 0 967 301 91 9 chr12 17827642 17828084 -126454405 + L2 LINE L2 2836 3313 0 21 0 0 0 chr12 17832654 17832675 -126449814 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 17833380 17833404 -126449085 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr12 17833826 17833857 -126448632 + AT_rich Low_complexity Low_complexity 1 31 0 318 50 0 0 chr12 17836765 17836805 -126445684 + (A)n Simple_repeat Simple_repeat 1 40 0 261 231 11 22 chr12 17838143 17838234 -126444255 + (TA)n Simple_repeat Simple_repeat 2 91 0 354 255 0 20 chr12 17838428 17838526 -126443963 - MIR3 SINE MIR -23 185 90 21 0 0 0 chr12 17840309 17840330 -126442159 + AT_rich Low_complexity Low_complexity 1 21 0 180 228 0 0 chr12 17843012 17843069 -126439420 + CT-rich Low_complexity Low_complexity 3 59 0 249 180 0 0 chr12 17844601 17844651 -126437838 + (TG)n Simple_repeat Simple_repeat 2 51 0 356 71 18 0 chr12 17845177 17845233 -126437256 + (GA)n Simple_repeat Simple_repeat 1 57 0 25 0 0 0 chr12 17846386 17846411 -126436078 + AT_rich Low_complexity Low_complexity 1 25 0 197 300 50 12 chr12 17850199 17850279 -126432210 + MIR SINE MIR 180 262 0 280 341 63 40 chr12 17850404 17850530 -126431959 + L2 LINE L2 3136 3264 -8 530 167 8 56 chr12 17850668 17850794 -126431695 + AluSg/x SINE Alu 135 254 -56 192 40 0 0 chr12 17850852 17850877 -126431612 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 246 303 220 0 chr12 17850947 17851056 -126431433 + L2 LINE L2 3137 3269 -3 315 358 89 57 chr12 17852504 17853155 -126429334 + HAL1b LINE L1 26 697 -651 1475 188 117 0 chr12 17853395 17853703 -126428786 - MER2 DNA MER2_type 0 344 1 199 365 113 25 chr12 17853777 17853936 -126428553 - MIR SINE MIR -68 194 22 1251 234 8 86 chr12 17854281 17854758 -126427731 - L1MD3 LINE L1 0 8037 7613 200 170 38 19 chr12 17855080 17855133 -126427356 + GA-rich Low_complexity Low_complexity 2 55 0 249 307 73 49 chr12 17856347 17856554 -126425935 - MLT1G1 LTR MaLR -313 229 20 197 358 42 17 chr12 17856905 17857025 -126425464 + MIR3 SINE MIR 69 191 -17 699 258 58 11 chr12 17858080 17858270 -126424219 + MER3 DNA MER1_type 2 200 -9 223 336 61 30 chr12 17858542 17858673 -126423816 + L2 LINE L2 3179 3313 0 236 157 0 78 chr12 17859406 17859457 -126423032 + MIR3 SINE MIR 154 200 -8 462 289 103 47 chr12 17860690 17860922 -126421567 - MIR SINE MIR -5 257 13 28 61 0 0 chr12 17862014 17862063 -126420426 + AT_rich Low_complexity Low_complexity 1 49 0 1183 179 0 0 chr12 17862064 17862265 -126420224 - AluJo SINE Alu -27 285 85 180 183 56 99 chr12 17862400 17862471 -126420018 + MIR SINE MIR 145 212 -50 27 29 0 0 chr12 17863446 17863480 -126419009 + AT_rich Low_complexity Low_complexity 1 34 0 22 80 0 0 chr12 17863812 17863862 -126418627 + AT_rich Low_complexity Low_complexity 1 50 0 2219 75 0 0 chr12 17863889 17864187 -126418302 + AluY SINE Alu 15 312 0 1548 142 34 4 chr12 17865007 17865240 -126417249 + AluSx SINE Alu 3 242 -70 654 37 0 0 chr12 17865281 17865362 -126417127 + (GGAA)n Simple_repeat Simple_repeat 3 83 0 1619 174 0 0 chr12 17865594 17865870 -126416619 + AluSx SINE Alu 1 276 -36 183 80 0 0 chr12 17865872 17865897 -126416592 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 211 385 68 7 chr12 17866325 17866473 -126416016 - MIR SINE MIR -55 207 51 321 89 0 0 chr12 17867333 17867378 -126415111 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2178 132 0 0 chr12 17867527 17867837 -126414652 - AluSx SINE Alu -2 310 1 504 85 51 0 chr12 17868376 17868494 -126413995 + (TA)n Simple_repeat Simple_repeat 1 124 0 1493 223 7 3 chr12 17868494 17868786 -126413703 - AluJo SINE Alu -19 293 1 23 33 0 0 chr12 17869332 17869362 -126413127 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 17870159 17870180 -126412309 + AT_rich Low_complexity Low_complexity 1 21 0 22 88 0 0 chr12 17870831 17870888 -126411601 + AT_rich Low_complexity Low_complexity 1 57 0 389 276 20 0 chr12 17871873 17871971 -126410518 - MER58B DNA MER1_type -4 337 238 230 306 108 13 chr12 17872084 17872241 -126410248 + MIR3 SINE MIR 23 194 -14 231 248 26 34 chr12 17872265 17872382 -126410107 - L1MC4 LINE L1 -1314 6728 6613 197 171 45 0 chr12 17872389 17872477 -126410012 + (TA)n Simple_repeat Simple_repeat 1 92 0 299 202 9 0 chr12 17872505 17872614 -126409875 + (TA)n Simple_repeat Simple_repeat 1 110 0 270 148 0 131 chr12 17872614 17872675 -126409814 - AluJo SINE Alu -15 287 235 821 198 0 70 chr12 17872675 17872847 -126409642 - AluJo SINE Alu -152 160 1 1921 98 83 14 chr12 17873655 17873932 -126408557 + AluSq SINE Alu 1 296 -17 2067 92 20 26 chr12 17875468 17875774 -126406715 - AluSq SINE Alu -9 304 1 2519 83 11 51 chr12 17875814 17876022 -126406467 - THE1B LTR MaLR -4 360 172 2372 80 0 3 chr12 17876022 17876334 -126406155 + AluY SINE Alu 1 311 0 2519 83 11 51 chr12 17876334 17876500 -126405989 - THE1B LTR MaLR -192 172 1 9547 105 35 60 chr12 17876500 17876578 -126405911 - THE1B-int LTR MaLR 0 1580 1502 2123 101 7 10 chr12 17876578 17876876 -126405613 - AluSg SINE Alu -13 297 1 9547 105 35 60 chr12 17876876 17878417 -126404072 - THE1B-int LTR MaLR -78 1502 1 1341 140 103 120 chr12 17878417 17878685 -126403804 - THE1B LTR MaLR 0 364 176 1873 144 3 17 chr12 17878685 17878977 -126403512 - AluSx SINE Alu -24 288 1 1341 140 103 120 chr12 17878977 17879151 -126403338 - THE1B LTR MaLR -188 176 1 819 203 28 6 chr12 17879747 17879924 -126402565 - MER20 DNA MER1_type -2 217 37 190 395 0 0 chr12 17880356 17880432 -126402057 + L2 LINE L2 3007 3082 -190 370 316 52 16 chr12 17880503 17880696 -126401793 - HAL1b LINE L1 -1063 285 86 25 0 0 0 chr12 17880925 17880950 -126401539 + AT_rich Low_complexity Low_complexity 1 25 0 237 297 0 14 chr12 17881131 17881205 -126401284 + T-rich Low_complexity Low_complexity 2 74 0 1001 225 59 74 chr12 17881720 17882111 -126400378 - L1ME1 LINE L1 0 6178 5790 2081 276 54 24 chr12 17882178 17882931 -126399558 - L1MEc LINE L1 -5528 868 93 302 257 14 0 chr12 17883294 17883368 -126399121 + GA-rich Low_complexity Low_complexity 4 78 0 2215 121 0 6 chr12 17883804 17884117 -126398372 - AluSq SINE Alu 0 313 3 806 162 7 0 chr12 17884633 17884769 -126397720 - MLT1D LTR MaLR 0 505 369 4152 276 47 35 chr12 17884776 17885507 -126396982 + L1MC2 LINE L1 1535 2256 -3959 351 0 0 0 chr12 17885507 17885546 -126396943 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1638 168 11 4 chr12 17885549 17885829 -126396660 - AluSx SINE Alu -30 282 1 4152 276 47 35 chr12 17885829 17885910 -126396579 + L1MC2 LINE L1 2257 2336 -3879 1731 78 42 95 chr12 17885910 17886193 -126396296 + AluY SINE Alu 1 268 -43 210 37 0 0 chr12 17886197 17886224 -126396265 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4152 276 47 35 chr12 17886224 17888340 -126394149 + L1MC2 LINE L1 2338 4501 -1714 2618 169 7 2 chr12 17888340 17888766 -126393723 - MSTA LTR MaLR 0 428 1 4152 276 47 35 chr12 17888766 17888933 -126393556 + L1MC2 LINE L1 4501 4665 -1550 * 5041 128 27 23 chr12 17888928 17889769 -126392720 - L1PA13 LINE L1 -1 6162 5318 17810 179 18 7 chr12 17889772 17892675 -126389814 - L1PA13 LINE L1 -11 7590 4721 2023 128 75 20 chr12 17892675 17893020 -126389469 - THE1B LTR MaLR 0 364 1 17810 179 18 7 chr12 17893020 17895807 -126386682 - L1PA13 LINE L1 -2880 4721 1832 477 193 29 43 chr12 17895807 17895947 -126386542 + L1MC2 LINE L1 4649 4786 -1429 2142 124 0 0 chr12 17895948 17896239 -126386250 + AluSc SINE Alu 1 291 -18 2685 208 40 13 chr12 17896244 17897169 -126385320 + L1MEc LINE L1 4751 5698 -753 521 259 0 7 chr12 17897172 17897311 -126385178 + L1MC2 LINE L1 4781 4918 -1297 3052 204 35 11 chr12 17897318 17898013 -126384476 + L1MC2 LINE L1 5701 6411 -2 527 239 62 8 chr12 17898015 17898145 -126384344 - MLT1D LTR MaLR -121 384 248 778 53 53 24 chr12 17899289 17899458 -126383031 + (TCTA)n Simple_repeat Simple_repeat 3 176 0 1836 104 4 0 chr12 17900089 17900330 -126382159 + AluSp SINE Alu 1 242 -71 1770 147 0 18 chr12 17900332 17900617 -126381872 + AluSx SINE Alu 26 305 -7 637 310 67 64 chr12 17900982 17901311 -126381178 - L2 LINE L2 -411 2903 2574 567 224 32 78 chr12 17901409 17901628 -126380861 + L1MC5 LINE L1 7297 7505 -456 501 261 59 0 chr12 17901628 17901747 -126380742 + MER20 DNA MER1_type 1 126 -93 252 200 92 15 chr12 17901805 17901870 -126380619 + MER20 DNA MER1_type 146 215 -4 953 229 127 14 chr12 17901872 17902235 -126380254 + L1MC5 LINE L1 7498 7901 -60 21 36 0 0 chr12 17902439 17902467 -126380022 + AT_rich Low_complexity Low_complexity 1 28 0 228 355 26 16 chr12 17902569 17902758 -126379731 - L1ME LINE L1 -454 5667 5477 21 0 0 0 chr12 17902793 17902814 -126379675 + AT_rich Low_complexity Low_complexity 1 21 0 1285 147 14 14 chr12 17902890 17903130 -126379359 + AluSg/x SINE Alu 75 314 0 238 321 47 9 chr12 17903153 17903365 -126379124 - L1ME LINE L1 -1549 4597 4378 21 0 0 0 chr12 17906556 17906577 -126375912 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr12 17907983 17908032 -126374457 + AT_rich Low_complexity Low_complexity 1 49 0 377 323 38 15 chr12 17908368 17908501 -126373988 - L3b LINE CR1 -23 1560 1425 379 271 151 55 chr12 17908821 17909039 -126373450 - Charlie8 DNA MER1_type -415 2002 1764 35 54 0 0 chr12 17909333 17909389 -126373100 + AT_rich Low_complexity Low_complexity 1 56 0 3217 286 122 37 chr12 17909549 17911302 -126371187 - Charlie8 DNA MER1_type -341 2076 176 252 0 0 0 chr12 17911442 17911470 -126371019 + (T)n Simple_repeat Simple_repeat 1 28 0 332 220 110 9 chr12 17911687 17911796 -126370693 + MIR SINE MIR 86 205 -57 3786 157 16 3 chr12 17911827 17912496 -126369993 - L1MC1 LINE L1 -6 6327 5650 2450 251 12 25 chr12 17912496 17913248 -126369241 - L1MC1 LINE L1 -985 5161 4420 21 0 0 0 chr12 17913283 17913304 -126369185 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr12 17913454 17913500 -126368989 + AT_rich Low_complexity Low_complexity 1 46 0 402 329 50 6 chr12 17913526 17913687 -126368802 + MIR SINE MIR 23 190 -72 412 255 97 36 chr12 17913799 17914046 -126368443 - L1ME4a LINE L1 -5 6116 5855 560 128 0 0 chr12 17914483 17914569 -126367920 + L1MC1 LINE L1 5894 5979 -354 646 268 169 6 chr12 17916285 17916468 -126366021 - MIR SINE MIR 0 262 50 22 0 0 0 chr12 17918028 17918050 -126364439 + AT_rich Low_complexity Low_complexity 1 22 0 1467 158 142 3 chr12 17918296 17918613 -126363876 - MER46B DNA MER2_type 0 236 1 1384 120 33 49 chr12 17918619 17918868 -126363621 + L1MC1 LINE L1 5935 6178 -155 414 127 89 0 chr12 17918881 17918960 -126363529 + L1MC1 LINE L1 6231 6316 -17 3070 273 78 102 chr12 17918981 17919083 -126363406 + L2 LINE L2 1360 1463 -1851 1722 199 64 0 chr12 17919083 17919425 -126363064 + MLT1A1 LTR MaLR 1 364 -1 3070 273 78 102 chr12 17919425 17920139 -126362350 + L2 LINE L2 1463 2192 -1122 597 219 9 0 chr12 17920139 17920244 -126362245 - FLAM_A SINE Alu -29 113 8 3070 273 78 102 chr12 17920244 17920957 -126361532 + L2 LINE L2 2192 2955 -359 24 53 0 0 chr12 17922123 17922161 -126360328 + AT_rich Low_complexity Low_complexity 1 38 0 214 238 0 0 chr12 17922447 17922489 -126360000 + CT-rich Low_complexity Low_complexity 3 44 0 205 283 0 0 chr12 17923265 17923311 -126359178 - L2 LINE L2 -6 3307 3262 1780 148 3 40 chr12 17923386 17923690 -126358799 + AluJb SINE Alu 1 293 -19 26 0 0 0 chr12 17923694 17923720 -126358769 + AT_rich Low_complexity Low_complexity 1 26 0 2029 208 0 3 chr12 17923725 17924091 -126358398 - MLT1A1 LTR MaLR 0 365 1 23 33 0 0 chr12 17925599 17925629 -126356860 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr12 17925670 17925693 -126356796 + AT_rich Low_complexity Low_complexity 1 23 0 238 275 114 12 chr12 17925927 17926026 -126356463 + MIR SINE MIR 45 153 -55 411 65 26 39 chr12 17926250 17926327 -126356162 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 212 129 0 0 chr12 17926327 17926358 -126356131 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 1942 161 0 0 chr12 17926362 17926660 -126355829 - AluSx SINE Alu -14 298 1 213 132 0 0 chr12 17927107 17927145 -126355344 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 976 253 64 4 chr12 17927465 17927698 -126354791 - MIR SINE MIR -5 257 11 407 269 70 108 chr12 17928067 17928483 -126354006 + MLT1K LTR MaLR 69 468 -120 552 322 99 61 chr12 17928497 17928922 -126353567 + L2 LINE L2 2873 3313 0 8763 202 28 33 chr12 17929123 17931944 -126350545 + L1MA6 LINE L1 3371 6173 -127 535 187 8 8 chr12 17931951 17932074 -126350415 + GA-rich Low_complexity Low_complexity 2 124 0 784 152 0 0 chr12 17932103 17932235 -126350254 + L1MA9 LINE L1 6179 6310 -2 22 0 0 0 chr12 17932263 17932285 -126350204 + AT_rich Low_complexity Low_complexity 1 22 0 1823 201 31 10 chr12 17932469 17932857 -126349632 + MSTD LTR MaLR 1 396 0 5690 242 114 26 chr12 17932859 17934449 -126348040 + MSTD-int LTR MaLR 2 1731 -4 2007 208 8 8 chr12 17934453 17934847 -126347642 + MSTD LTR MaLR 1 394 -2 199 360 142 40 chr12 17935183 17935663 -126346826 - L2 LINE L2 -565 2749 2221 1316 163 51 12 chr12 17935679 17935936 -126346553 - ORSL DNA AcHobo 0 275 9 2220 88 10 0 chr12 17937338 17937634 -126344855 - AluSq SINE Alu -14 299 1 191 350 169 38 chr12 17938067 17938761 -126343728 - L2 LINE L2 -1215 2099 1315 834 258 65 9 chr12 17939150 17939379 -126343110 - MIR SINE MIR 0 262 21 28 29 0 0 chr12 17940801 17940836 -126341653 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr12 17941029 17941053 -126341436 + AT_rich Low_complexity Low_complexity 1 24 0 266 266 117 8 chr12 17941056 17941184 -126341305 - L1ME4a LINE L1 -3 6118 5977 1978 149 3 0 chr12 17941432 17941728 -126340761 + AluSq SINE Alu 3 299 -14 548 306 43 47 chr12 17941744 17942002 -126340487 - MLT1I LTR MaLR -82 327 71 430 139 0 0 chr12 17942110 17942182 -126340307 + L1MA4A LINE L1 6209 6280 -23 24 32 0 0 chr12 17942278 17942309 -126340180 + AT_rich Low_complexity Low_complexity 1 31 0 307 359 75 46 chr12 17942532 17943023 -126339466 + L2 LINE L2 2722 3224 -48 22 0 0 0 chr12 17943630 17943652 -126338837 + AT_rich Low_complexity Low_complexity 1 22 0 15253 28 3 2 chr12 17943663 17945515 -126336974 - L1PA2 LINE L1 -1520 4626 2772 7843 13 0 0 chr12 17945515 17947067 -126335422 + L1PA2 LINE L1 4604 6155 0 25 51 0 0 chr12 17947346 17947385 -126335104 + AT_rich Low_complexity Low_complexity 1 39 0 414 252 42 17 chr12 17948610 17948729 -126333760 - MIR SINE MIR -94 168 47 400 351 109 9 chr12 17949006 17949239 -126333250 + MIR SINE MIR 3 256 -6 2314 40 4 0 chr12 17949376 17949687 -126332802 - AluY SINE Alu 0 320 9 229 342 0 13 chr12 17950013 17950089 -126332400 + L2 LINE L2 2625 2699 -615 217 250 0 0 chr12 17950266 17950314 -126332175 + L2 LINE L2 3261 3308 -5 2257 88 0 0 chr12 17950699 17950996 -126331493 - AluY SINE Alu -10 301 5 589 306 58 21 chr12 17951998 17952240 -126330249 - MIR SINE MIR 0 262 12 565 283 64 60 chr12 17956573 17956806 -126325683 - MIR SINE MIR 0 262 29 4014 168 62 50 chr12 17957326 17957839 -126324650 + MER4D LTR ERV1 1 530 -373 2087 109 0 82 chr12 17957839 17958179 -126324310 + AluSx SINE Alu 1 312 0 4014 168 62 50 chr12 17958179 17958558 -126323931 + MER4D LTR ERV1 530 903 0 250 325 153 16 chr12 17958753 17959008 -126323481 - L2 LINE L2 -779 2535 2246 759 333 125 15 chr12 17959250 17960166 -126322323 - L2 LINE L2 -23 3290 2277 515 16 16 0 chr12 17960276 17960340 -126322149 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 191 288 61 0 chr12 17961015 17961081 -126321408 - L2 LINE L2 -959 2355 2286 197 328 69 0 chr12 17961823 17961881 -126320608 + L2 LINE L2 3194 3255 -17 183 148 0 0 chr12 17962242 17962269 -126320220 + L2 LINE L2 3267 3293 -20 834 39 0 0 chr12 17962832 17962934 -126319555 + (TTCC)n Simple_repeat Simple_repeat 1 102 0 347 290 60 10 chr12 17963489 17963589 -126318900 - L2 LINE L2 -21 3251 3147 838 300 48 31 chr12 17963707 17964060 -126318429 + L2 LINE L2 2955 3313 0 21 0 0 0 chr12 17964687 17964708 -126317781 + AT_rich Low_complexity Low_complexity 1 21 0 665 289 27 51 chr12 17965236 17965492 -126316997 + MIR SINE MIR 13 262 0 206 116 23 0 chr12 17965781 17965824 -126316665 + A-rich Low_complexity Low_complexity 2 45 0 1985 115 0 4 chr12 17965838 17966116 -126316373 - AluSx SINE Alu -25 287 11 2194 202 131 24 chr12 17966812 17967516 -126314973 + LTR1B LTR ERV1 1 826 0 24 0 0 0 chr12 17967699 17967723 -126314766 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr12 17967866 17967893 -126314596 + (CA)n Simple_repeat Simple_repeat 2 28 0 826 169 49 0 chr12 17968516 17968658 -126313831 + MSTB1 LTR MaLR 4 152 -274 1412 158 54 0 chr12 17968956 17969197 -126313292 + MSTB1 LTR MaLR 157 410 -22 217 188 21 42 chr12 17969487 17969535 -126312954 + MIR SINE MIR 110 151 -57 213 302 143 8 chr12 17969745 17969871 -126312618 + MIR SINE MIR 96 238 -24 256 57 0 75 chr12 17970022 17970075 -126312414 + (GAAAA)n Simple_repeat Simple_repeat 3 51 0 2235 48 0 0 chr12 17970271 17970542 -126311947 - L1PA5 LINE L1 -498 5656 5386 3987 47 0 2 chr12 17970542 17971033 -126311456 + L1PA5 LINE L1 5661 6151 -3 217 193 52 46 chr12 17971921 17972023 -126310466 - L2 LINE L2 -274 3039 2937 194 298 0 0 chr12 17972138 17972185 -126310304 + L2 LINE L2 3234 3280 -33 571 332 45 4 chr12 17972198 17972445 -126310044 + MIR SINE MIR 2 258 -4 251 308 0 0 chr12 17972519 17972584 -126309905 + MLT1J LTR MaLR 103 167 -344 3388 128 35 2 chr12 17972712 17973222 -126309267 + MER1A DNA MER1_type 1 527 0 202 332 190 17 chr12 17973584 17973936 -126308553 - L2 LINE L2 -613 2701 2289 273 197 0 0 chr12 17973942 17974008 -126308481 + (CAT)n Simple_repeat Simple_repeat 3 68 0 240 309 175 0 chr12 17974247 17974344 -126308145 + MIR SINE MIR 59 172 -90 432 273 61 23 chr12 17977532 17977664 -126304825 - MIR SINE MIR -87 175 39 234 105 0 0 chr12 17978046 17978084 -126304405 + (T)n Simple_repeat Simple_repeat 1 38 0 25 31 0 0 chr12 17980012 17980044 -126302445 + AT_rich Low_complexity Low_complexity 1 32 0 2245 95 0 0 chr12 17980235 17980529 -126301960 + AluY SINE Alu 1 294 -17 383 337 18 30 chr12 17980603 17980769 -126301720 - MIR SINE MIR -55 207 44 23 0 0 0 chr12 17981141 17981164 -126301325 + AT_rich Low_complexity Low_complexity 1 23 0 6524 102 3 9 chr12 17981918 17982871 -126299618 + L1MA1 LINE L1 5356 6302 0 24 77 0 0 chr12 17983367 17983419 -126299070 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr12 17983484 17983507 -126298982 + AT_rich Low_complexity Low_complexity 1 23 0 408 365 45 14 chr12 17984630 17984852 -126297637 + L3 LINE CR1 199 427 -1150 272 288 114 15 chr12 17984861 17984993 -126297496 - MLT1L LTR MaLR -135 480 336 567 281 107 43 chr12 17985224 17985552 -126296937 - MLT1J2 LTR MaLR -2 448 100 450 361 102 17 chr12 17985619 17985971 -126296518 + L3 LINE CR1 475 856 -721 184 289 58 0 chr12 17985979 17986031 -126296458 - L2 LINE L2 -5 3308 3254 267 343 157 11 chr12 17986199 17986377 -126296112 + L3 LINE CR1 976 1179 -398 236 320 104 32 chr12 17989125 17989250 -126293239 + L2 LINE L2 3139 3272 0 663 300 76 13 chr12 17989385 17989622 -126292867 + MIR SINE MIR 11 262 0 440 291 8 8 chr12 17989829 17989963 -126292526 - MIR SINE MIR 0 262 129 261 326 22 65 chr12 17989995 17990179 -126292310 + L2 LINE L2 3119 3294 -19 781 158 146 126 chr12 17990181 17990428 -126292061 + AluJo SINE Alu 43 294 -18 298 299 31 10 chr12 17990462 17990559 -126291930 - MIR SINE MIR -156 106 8 327 293 145 21 chr12 17990643 17990885 -126291604 + L2 LINE L2 2042 2313 -1001 278 217 20 113 chr12 17991141 17991271 -126291218 + MLT1J2 LTR MaLR 41 162 -284 227 140 20 0 chr12 17991654 17991704 -126290785 + L1ME4a LINE L1 6060 6110 -11 256 347 20 80 chr12 17991825 17992076 -126290413 + L2 LINE L2 2867 3102 -170 2175 120 3 0 chr12 17992162 17992463 -126290026 + AluSc SINE Alu 1 302 -7 334 182 0 0 chr12 17993576 17993631 -126288858 + MER45 DNA AcHobo 1526 1580 -1 1138 269 132 27 chr12 17995677 17996123 -126286366 - MER20B DNA MER1_type -287 496 4 1441 200 17 24 chr12 17996147 17996442 -126286047 - AluJo SINE Alu -19 293 1 206 388 3 3 chr12 17996649 17996771 -126285718 + MIR SINE MIR 30 150 -64 1753 160 0 4 chr12 17996825 17997087 -126285402 - AluJb SINE Alu -29 283 23 1952 161 69 62 chr12 17998194 17998616 -126283873 + MSTB LTR MaLR 2 426 0 372 256 158 24 chr12 17998837 17999001 -126283488 + L2 LINE L2 3127 3312 -1 5861 95 17 51 chr12 18003655 18004044 -126278445 + L1PA11 LINE L1 5284 5685 -489 1762 147 0 63 chr12 18004044 18004363 -126278126 + AluSx SINE Alu 6 304 -8 5861 95 17 51 chr12 18004363 18004892 -126277597 + L1PA11 LINE L1 5685 6171 -3 25986 89 6 41 chr12 18005506 18009318 -126273171 - L1PA7 LINE L1 -5 6149 2546 324 0 0 0 chr12 18009318 18009354 -126273135 + (TTA)n Simple_repeat Simple_repeat 2 37 0 25986 89 6 41 chr12 18009354 18010426 -126272063 - L1PA7 LINE L1 -3608 2546 1438 531 282 70 0 chr12 18010426 18010653 -126271836 + L1ME2 LINE L1 1618 1860 -4536 6944 239 60 24 chr12 18010671 18011144 -126271345 + L1ME2 LINE L1 2938 3392 -2841 1799 173 23 7 chr12 18011144 18011451 -126271038 - AluSx SINE Alu 0 312 1 6944 239 60 24 chr12 18011451 18013124 -126269365 + L1ME2 LINE L1 3392 5236 -997 2039 125 0 16 chr12 18013124 18013436 -126269053 - AluSc SINE Alu -2 307 1 6944 239 60 24 chr12 18013436 18014461 -126268028 + L1ME2 LINE L1 5236 6222 -11 649 142 0 22 chr12 18015210 18015344 -126267145 + (TTCC)n Simple_repeat Simple_repeat 4 134 0 5019 143 16 22 chr12 18016420 18017785 -126264704 + L1PA16 LINE L1 4808 6159 -7 1952 121 41 0 chr12 18018075 18018365 -126264124 + AluSg SINE Alu 1 302 -8 490 331 93 18 chr12 18018941 18019219 -126263270 + MLT1L LTR MaLR 306 604 -11 216 0 0 0 chr12 18019729 18019753 -126262736 + (CAATT)n Simple_repeat Simple_repeat 4 27 0 595 299 117 7 chr12 18019940 18020238 -126262251 + MLT1J LTR MaLR 3 333 -178 203 194 0 0 chr12 18023118 18023154 -126259335 + A-rich Low_complexity Low_complexity 1 36 0 285 354 6 6 chr12 18023459 18023617 -126258872 + (TA)n Simple_repeat Simple_repeat 1 158 0 22 35 0 0 chr12 18026542 18026571 -126255918 + AT_rich Low_complexity Low_complexity 1 29 0 279 324 65 0 chr12 18026966 18027105 -126255384 - L1MA5 LINE L1 -412 5888 5741 230 282 56 0 chr12 18027096 18027167 -126255322 + L1ME LINE L1 5562 5636 -534 * 1598 326 65 41 chr12 18027370 18028517 -126253972 - L2 LINE L2 -3 3310 2133 1284 297 102 52 chr12 18028931 18029666 -126252823 - L2 LINE L2 -1184 2130 1359 1645 210 79 50 chr12 18029668 18030285 -126252204 + MLT1E3 LTR MaLR 1 624 0 612 318 131 42 chr12 18030286 18030736 -126251753 - L2 LINE L2 -1960 1354 865 1151 213 4 9 chr12 18031111 18031336 -126251153 + MER58A DNA MER1_type 1 224 0 367 259 31 67 chr12 18032027 18032220 -126250269 - L1M4 LINE L1 -2876 3270 3085 508 328 104 55 chr12 18032669 18033364 -126249125 + L2 LINE L2 2470 3187 -85 280 303 30 38 chr12 18033746 18033878 -126248611 + MIR SINE MIR 82 212 -50 23 54 0 0 chr12 18033935 18033972 -126248517 + AT_rich Low_complexity Low_complexity 1 37 0 365 287 126 43 chr12 18034180 18034434 -126248055 - HAL1 LINE L1 -393 2114 1840 617 259 153 10 chr12 18034518 18034831 -126247658 - HAL1 LINE L1 -803 1704 1347 392 276 40 48 chr12 18034889 18035161 -126247328 - HAL1 LINE L1 -1249 1258 989 278 231 19 29 chr12 18035165 18035269 -126247220 + (TA)n Simple_repeat Simple_repeat 1 103 0 2430 186 32 12 chr12 18035269 18035768 -126246721 - Charlie1b DNA MER1_type 0 523 15 254 269 123 8 chr12 18035854 18035984 -126246505 - HAL1 LINE L1 -1553 954 810 1106 234 13 77 chr12 18036036 18036424 -126246065 - MER20B DNA MER1_type 0 783 421 2302 205 19 79 chr12 18036441 18037114 -126245375 - L1MA9 LINE L1 -38 6274 5642 854 230 42 121 chr12 18037114 18037519 -126244970 - MER20B DNA MER1_type -343 440 68 339 306 113 42 chr12 18037803 18038156 -126244333 - HAL1 LINE L1 -2129 378 1 548 299 93 50 chr12 18040033 18040334 -126242155 - LTR33A LTR ERVL -194 329 16 629 347 34 15 chr12 18040602 18040870 -126241619 - MERVL LTR ERVL -2160 3325 3053 2039 113 14 7 chr12 18041127 18041419 -126241070 - AluSx SINE Alu -18 294 1 1179 295 62 70 chr12 18041582 18041787 -126240702 + HERV16 LTR ERVL 100 305 -4691 2103 49 46 0 chr12 18041787 18042050 -126240439 + AluY SINE Alu 6 280 -31 321 47 0 0 chr12 18042052 18042095 -126240394 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 1179 295 62 70 chr12 18042095 18042738 -126239751 + HERV16 LTR ERVL 306 944 -4052 187 371 28 14 chr12 18043314 18043457 -126239032 + L2 LINE L2 2751 2895 -419 2646 159 19 8 chr12 18043560 18044043 -126238446 - L1PA16 LINE L1 -5 6161 5674 2042 127 15 26 chr12 18044602 18044941 -126237548 + MER1B DNA MER1_type 3 337 0 50 31 0 0 chr12 18045355 18045419 -126237070 + AT_rich Low_complexity Low_complexity 1 64 0 494 267 89 13 chr12 18045594 18045863 -126236626 - L2 LINE L2 0 3313 2980 225 0 0 0 chr12 18046585 18046610 -126235879 + (A)n Simple_repeat Simple_repeat 1 25 0 215 263 237 13 chr12 18047256 18047412 -126235077 - L2 LINE L2 -10 3303 3113 188 326 64 52 chr12 18047770 18047942 -126234547 - L2 LINE L2 -587 2727 2554 25 90 0 0 chr12 18048365 18048432 -126234057 + AT_rich Low_complexity Low_complexity 1 67 0 287 276 83 48 chr12 18048886 18049031 -126233458 + MIR SINE MIR 2 151 -111 288 339 0 8 chr12 18049160 18049278 -126233211 - L1M4 LINE L1 -3397 2749 2633 1867 221 60 13 chr12 18049306 18049773 -126232716 - L1MB5 LINE L1 0 6174 5686 3645 225 61 56 chr12 18049777 18050385 -126232104 + L1MA9 LINE L1 991 1595 -4953 1865 160 30 13 chr12 18050385 18050685 -126231804 - AluSx SINE Alu -7 305 1 3645 225 61 56 chr12 18050685 18053398 -126229091 + L1MA9 LINE L1 1595 6300 -248 3784 262 40 15 chr12 18053414 18054794 -126227695 + L1MB4 LINE L1 2482 3895 -2251 2921 177 26 63 chr12 18054777 18055915 -126226574 + L1MB4 LINE L1 4802 5918 -262 * 2097 138 32 6 chr12 18055915 18056262 -126226227 - THE1B LTR MaLR 0 364 9 1130 215 45 4 chr12 18056268 18056521 -126225968 + L1MB4 LINE L1 5910 6140 -40 736 245 59 81 chr12 18056528 18056864 -126225625 - L1MEc LINE L1 -3218 2997 2655 2412 62 0 3 chr12 18056864 18057171 -126225318 - AluY SINE Alu -5 306 1 736 245 59 81 chr12 18057171 18057438 -126225051 - L1MEc LINE L1 -3560 2655 2384 6697 81 3 0 chr12 18057438 18058577 -126223912 - L1PA8 LINE L1 0 6172 5024 736 245 59 81 chr12 18058577 18058591 -126223898 - L1MEc LINE L1 -3831 2384 2371 1152 196 61 61 chr12 18058591 18058887 -126223602 - AluJo SINE Alu -6 296 1 736 245 59 81 chr12 18058887 18059248 -126223241 - L1MEc LINE L1 -3844 2371 1911 2271 281 46 10 chr12 18059252 18060320 -126222169 - L1M4 LINE L1 -2179 3967 2862 9371 148 21 16 chr12 18061303 18062764 -126219725 + Tigger1 DNA MER2_type 1 1472 -946 1558 90 18 0 chr12 18062764 18063051 -126219438 + L1MA2 LINE L1 6077 6367 0 9371 148 21 16 chr12 18063051 18063173 -126219316 + Tigger1 DNA MER2_type 1472 1592 -826 703 198 0 0 chr12 18063174 18063295 -126219194 + FLAM_C SINE Alu 2 122 -21 706 108 0 0 chr12 18063296 18063398 -126219091 + Tigger1 DNA MER2_type 1580 1681 -737 3567 97 12 2 chr12 18063432 18063929 -126218560 - L1PA11 LINE L1 -8 6166 5665 1662 98 8 0 chr12 18063929 18064163 -126218326 + L1PA11 LINE L1 5418 5653 -521 4680 144 8 8 chr12 18064163 18064914 -126217575 + Tigger1 DNA MER2_type 1668 2418 0 189 0 0 0 chr12 18065244 18065265 -126217224 + (TAA)n Simple_repeat Simple_repeat 1 21 0 1890 43 0 0 chr12 18066736 18066969 -126215520 - L1PA2 LINE L1 0 6155 5923 251 310 53 97 chr12 18068504 18068629 -126213860 - L2 LINE L2 -72 3200 3088 1932 140 64 17 chr12 18068629 18068987 -126213502 - THE1C LTR MaLR 0 375 1 251 310 53 97 chr12 18068987 18069087 -126213402 - L2 LINE L2 -184 3088 2985 578 126 10 0 chr12 18069094 18069197 -126213292 + (TG)n Simple_repeat Simple_repeat 2 105 0 312 349 64 40 chr12 18069340 18069589 -126212900 - L2 LINE L2 -453 2861 2607 194 246 16 33 chr12 18069734 18069795 -126212694 + MIR SINE MIR 166 225 -37 393 109 0 0 chr12 18071622 18071686 -126210803 + (TG)n Simple_repeat Simple_repeat 1 64 0 1189 177 189 0 chr12 18072097 18072345 -126210144 + AluJb SINE Alu 1 295 -17 414 364 69 46 chr12 18072388 18073072 -126209417 + L2 LINE L2 2356 3058 -214 273 308 143 0 chr12 18073247 18073338 -126209151 - L2 LINE L2 0 3313 3210 1118 225 78 19 chr12 18073357 18073628 -126208861 + MER77 LTR ERV1 316 602 -3 709 355 66 13 chr12 18073720 18074038 -126208451 + L2 LINE L2 2641 2975 -339 2395 231 28 53 chr12 18074118 18074754 -126207735 - MER21-int LTR ERV1 -1555 2636 2017 356 348 144 5 chr12 18074830 18075017 -126207472 - L2 LINE L2 -204 3068 2856 814 90 18 0 chr12 18075802 18075913 -126206576 + L1PA13 LINE L1 5550 5662 -506 2779 108 24 0 chr12 18075915 18076332 -126206157 + L1PA13 LINE L1 5729 6155 -8 930 311 101 28 chr12 18076579 18077229 -126205260 - L2 LINE L2 0 3313 2625 994 171 0 0 chr12 18077234 18077404 -126205085 + MLT2C1 LTR ERVL 5 174 -223 327 265 10 20 chr12 18077404 18077506 -126204983 + (TA)n Simple_repeat Simple_repeat 2 102 0 253 116 93 0 chr12 18077512 18077555 -126204934 + MLT2C1 LTR ERVL 349 395 -2 630 267 78 0 chr12 18077556 18077736 -126204753 - L2 LINE L2 -685 2629 2436 300 304 70 25 chr12 18077880 18078038 -126204451 + MIR SINE MIR 84 248 -14 2349 179 15 73 chr12 18078242 18078440 -126204049 + MLT2B1 LTR ERVL 6 214 -306 1624 181 23 13 chr12 18078440 18078749 -126203740 + AluJo SINE Alu 1 312 0 2349 179 15 73 chr12 18078749 18079097 -126203392 + MLT2B1 LTR ERVL 214 520 0 459 0 0 0 chr12 18081061 18081112 -126201377 + (TG)n Simple_repeat Simple_repeat 2 52 0 573 251 59 105 chr12 18081533 18081684 -126200805 + L1MEd LINE L1 569 725 -5585 1902 89 104 0 chr12 18081684 18081954 -126200535 + AluSx SINE Alu 1 298 -14 573 251 59 105 chr12 18081954 18082072 -126200417 + L1MEd LINE L1 725 847 -5463 2147 113 0 10 chr12 18082072 18082373 -126200116 + AluSx SINE Alu 1 298 -14 573 251 59 105 chr12 18082373 18083018 -126199471 + L1MEd LINE L1 847 1497 -4813 333 314 133 9 chr12 18083113 18083323 -126199166 + L1MEd LINE L1 2119 2354 -3775 364 220 17 34 chr12 18083528 18083705 -126198784 + (TA)n Simple_repeat Simple_repeat 1 174 0 1310 277 99 39 chr12 18083705 18084765 -126197724 + L1MEd LINE L1 2638 3761 -2368 621 266 47 70 chr12 18084808 18085109 -126197380 - MER21B LTR ERV1 -149 714 421 413 219 26 73 chr12 18085118 18085269 -126197220 + L1MEd LINE L1 3805 3948 -2181 255 266 184 13 chr12 18085786 18085907 -126196582 - MIR SINE MIR -58 150 19 4198 195 41 21 chr12 18086609 18087445 -126195044 - MER21B LTR ERV1 -9 854 3 198 253 121 12 chr12 18088340 18088423 -126194066 + MIR SINE MIR 166 257 -5 27 62 0 0 chr12 18089694 18089742 -126192747 + AT_rich Low_complexity Low_complexity 1 48 0 224 229 12 48 chr12 18090023 18090106 -126192383 + GA-rich Low_complexity Low_complexity 1 80 0 184 158 0 79 chr12 18090789 18090827 -126191662 - L2 LINE L2 -37 3235 3201 399 21 0 0 chr12 18090863 18090911 -126191578 + (CA)n Simple_repeat Simple_repeat 2 49 0 302 335 145 47 chr12 18091260 18092024 -126190465 - L2 LINE L2 -649 2665 1827 318 283 94 31 chr12 18092419 18092578 -126189911 + MIR SINE MIR 17 185 -77 285 75 0 0 chr12 18094210 18094250 -126188239 + (CA)n Simple_repeat Simple_repeat 2 41 0 2178 104 3 3 chr12 18094915 18095213 -126187276 - AluSg SINE Alu -12 298 1 1356 265 49 15 chr12 18095436 18095847 -126186642 + MER110 LTR ERV1 46 470 -21 650 289 33 0 chr12 18096150 18096330 -126186159 + MIR SINE MIR 71 256 -6 396 0 0 0 chr12 18096921 18096965 -126185524 + (CA)n Simple_repeat Simple_repeat 2 45 0 446 49 16 0 chr12 18098664 18098725 -126183764 + (TCTA)n Simple_repeat Simple_repeat 2 63 0 446 322 74 37 chr12 18100074 18100481 -126182008 - L1MC4a LINE L1 -1843 5965 5544 226 324 181 19 chr12 18100650 18100755 -126181734 - L2 LINE L2 -9 3263 3142 1221 240 128 13 chr12 18100888 18101350 -126181139 - HAL1 LINE L1 -688 1819 1305 2010 218 94 13 chr12 18101352 18101902 -126180587 + MER97b DNA MER1_type? 4 598 -455 222 229 61 8 chr12 18101915 18102046 -126180443 + (TA)n Simple_repeat Simple_repeat 1 138 0 243 88 0 0 chr12 18102060 18102094 -126180395 + (TG)n Simple_repeat Simple_repeat 2 35 0 203 182 55 0 chr12 18102236 18102291 -126180198 + (TA)n Simple_repeat Simple_repeat 2 59 0 270 340 42 46 chr12 18102327 18102633 -126179856 - HAL1 LINE L1 -1551 956 652 351 291 69 87 chr12 18102883 18103158 -126179331 - HAL1 LINE L1 -2233 274 5 21 36 0 0 chr12 18103381 18103409 -126179080 + AT_rich Low_complexity Low_complexity 1 28 0 579 244 77 6 chr12 18103738 18103906 -126178583 - MIR SINE MIR -16 246 67 1316 270 88 17 chr12 18103925 18104343 -126178146 - LTR50 LTR ERVL -7 788 341 2730 10 0 3 chr12 18105091 18105397 -126177092 + AluYa5 SINE Alu 1 305 -6 197 328 16 0 chr12 18105674 18105738 -126176751 + L2 LINE L2 3249 3313 0 355 299 0 41 chr12 18106851 18106948 -126175541 + L2 LINE L2 3221 3313 0 318 377 62 36 chr12 18106959 18107428 -126175061 - L2 LINE L2 -869 2445 1965 308 326 132 16 chr12 18107768 18108026 -126174463 - L2 LINE L2 -222 3091 2804 190 353 98 0 chr12 18109509 18109611 -126172878 + L2 LINE L2 2553 2664 -650 11620 63 3 0 chr12 18109897 18112163 -126170326 - L1PA6 LINE L1 -13 6141 3866 243 339 156 0 chr12 18112532 18112641 -126169848 + L2 LINE L2 3180 3305 -8 904 264 25 21 chr12 18114151 18114386 -126168103 + MIR SINE MIR 27 262 0 204 188 0 0 chr12 18115797 18115829 -126166660 + (CA)n Simple_repeat Simple_repeat 1 32 0 249 211 0 0 chr12 18116534 18116591 -126165898 + T-rich Low_complexity Low_complexity 1 57 0 36 0 0 0 chr12 18117092 18117128 -126165361 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr12 18118054 18118080 -126164409 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr12 18118237 18118258 -126164231 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 18119863 18119884 -126162605 + AT_rich Low_complexity Low_complexity 1 21 0 253 252 238 7 chr12 18121065 18121208 -126161281 - MER104 DNA Tc2 -4 176 1 237 159 0 0 chr12 18121336 18121380 -126161109 + (TA)n Simple_repeat Simple_repeat 1 44 0 281 307 11 0 chr12 18121491 18121579 -126160910 + (CATATA)n Simple_repeat Simple_repeat 3 91 0 22 56 0 0 chr12 18121655 18121691 -126160798 + AT_rich Low_complexity Low_complexity 1 36 0 239 368 75 45 chr12 18122895 18123254 -126159235 + L2 LINE L2 2257 2626 -688 2494 31 0 3 chr12 18123388 18123714 -126158775 - AluY SINE Alu 0 325 1 244 372 70 6 chr12 18123855 18124011 -126158478 + L2 LINE L2 2890 3055 -217 213 329 29 0 chr12 18124436 18124506 -126157983 - L2 LINE L2 -799 2515 2444 502 264 96 0 chr12 18124712 18124837 -126157652 - MER58A DNA MER1_type 0 140 4 235 299 105 90 chr12 18124838 18125316 -126157173 - L2 LINE L2 -1068 2246 1762 6252 152 25 20 chr12 18125332 18127597 -126154892 + L1MA5A LINE L1 4016 6292 -5 21 0 0 0 chr12 18128048 18128069 -126154420 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr12 18128219 18128256 -126154233 + AT_rich Low_complexity Low_complexity 1 37 0 890 238 38 33 chr12 18128692 18128932 -126153557 - MIR SINE MIR -10 252 12 24 32 0 0 chr12 18130790 18130821 -126151668 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 18130850 18130871 -126151618 + AT_rich Low_complexity Low_complexity 1 21 0 558 323 205 12 chr12 18131273 18131673 -126150816 + L3 LINE CR1 1094 1570 -7 445 295 34 0 chr12 18131799 18131948 -126150541 - MER103 DNA DNA -3 163 10 21 36 0 0 chr12 18132069 18132097 -126150392 + AT_rich Low_complexity Low_complexity 1 28 0 902 299 28 38 chr12 18132186 18132580 -126149909 - Tigger8 DNA MER2_type -167 499 110 195 162 27 0 chr12 18133860 18133897 -126148592 - L2 LINE L2 -1096 2218 2181 259 341 83 39 chr12 18133948 18134177 -126148312 + L2 LINE L2 2549 2787 -527 3593 170 60 18 chr12 18134230 18134943 -126147546 + Tigger2 DNA MER2_type 2 744 -1974 1555 135 12 4 chr12 18135008 18135260 -126147229 + Tigger2 DNA MER2_type 2463 2716 -2 276 265 0 29 chr12 18135642 18135710 -126146779 + L2 LINE L2 3247 3312 -1 32 26 0 0 chr12 18136066 18136105 -126146384 + AT_rich Low_complexity Low_complexity 1 39 0 853 209 26 68 chr12 18137092 18137326 -126145163 + MER58A DNA MER1_type 1 224 0 321 269 135 43 chr12 18137391 18137532 -126144957 + MIR SINE MIR 83 236 -26 230 0 33 0 chr12 18137846 18137876 -126144613 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 318 280 120 20 chr12 18138537 18138637 -126143852 + L2 LINE L2 3203 3312 -1 1880 200 31 45 chr12 18139152 18139597 -126142892 - L1MCa LINE L1 -5945 481 43 1907 134 0 33 chr12 18140576 18140881 -126141608 + AluSx SINE Alu 1 295 -17 5394 255 46 64 chr12 18140983 18142800 -126139689 + L1MB7 LINE L1 15 1908 -5230 1691 177 0 3 chr12 18142800 18143121 -126139368 + AluSx SINE Alu 1 320 0 5394 255 46 64 chr12 18143121 18143902 -126138587 + L1MB7 LINE L1 1908 2702 -4436 6280 246 68 44 chr12 18144183 18144576 -126137913 + L1MB7 LINE L1 2762 3144 -3813 686 112 0 0 chr12 18144576 18144683 -126137806 + L1MA1 LINE L1 6193 6299 -3 6280 246 68 44 chr12 18144683 18146871 -126135618 + L1MB7 LINE L1 3144 5376 -1581 941 154 11 0 chr12 18146871 18147046 -126135443 + L1MA4 LINE L1 6113 6289 -11 6280 246 68 44 chr12 18147046 18147356 -126135133 + L1MB7 LINE L1 5376 5677 -1280 10430 154 30 24 chr12 18147356 18150379 -126132110 - L1MA3 LINE L1 -8 7716 4670 2031 167 60 32 chr12 18150384 18150903 -126131586 - MLT2A2 LTR ERVL 0 554 1 20170 189 28 6 chr12 18150903 18155446 -126127043 - L1MA3 LINE L1 -2900 4665 17 4078 204 35 9 chr12 18155452 18155874 -126126615 + L1MB7 LINE L1 5659 6068 -927 339 85 0 0 chr12 18155874 18155921 -126126568 + (TG)n Simple_repeat Simple_repeat 2 48 0 4078 204 35 9 chr12 18155921 18156807 -126125682 + L1MB7 LINE L1 6068 6995 0 21 0 0 0 chr12 18156807 18156828 -126125661 + AT_rich Low_complexity Low_complexity 1 21 0 349 276 30 81 chr12 18156936 18157233 -126125256 + L1M4c LINE L1 1364 1839 -904 200 184 0 0 chr12 18157456 18157494 -126124995 + (TG)n Simple_repeat Simple_repeat 1 38 0 345 125 0 0 chr12 18157718 18157774 -126124715 + (TG)n Simple_repeat Simple_repeat 2 57 0 582 301 167 30 chr12 18157998 18158400 -126124089 + LTR16A1 LTR ERVL 1 457 0 731 343 48 26 chr12 18159402 18159819 -126122670 + HERV16 LTR ERVL 1092 1517 -3479 1120 337 59 31 chr12 18159867 18160786 -126121703 + HERV16 LTR ERVL 1719 2666 -2670 259 191 29 15 chr12 18160945 18161013 -126121476 + (CA)n Simple_repeat Simple_repeat 2 70 0 24 53 0 0 chr12 18161020 18161058 -126121431 + AT_rich Low_complexity Low_complexity 1 38 0 1739 171 11 57 chr12 18161670 18162020 -126120469 - MER1B DNA MER1_type -1 336 3 802 130 135 5 chr12 18162364 18162556 -126119933 - L1 LINE L1 -1601 4545 4329 * 1515 201 25 6 chr12 18162553 18162871 -126119618 + L1 LINE L1 4536 4859 -1287 * 2185 260 25 58 chr12 18162867 18164774 -126117715 - L1M2 LINE L1 -4059 2789 1222 1975 177 11 64 chr12 18166270 18166706 -126115783 - MLT2D LTR ERVL 0 414 2 214 423 66 0 chr12 18167776 18167913 -126114576 + MIR3 SINE MIR 9 154 -54 1935 159 0 0 chr12 18168406 18168702 -126113787 - AluSx SINE Alu -16 296 1 209 269 0 0 chr12 18168765 18168817 -126113672 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 778 244 100 35 chr12 18168974 18169293 -126113196 - L1ME1 LINE L1 -1 6165 5826 664 253 32 61 chr12 18169296 18169672 -126112817 - L1ME1 LINE L1 -1462 4684 4320 * 3152 191 27 45 chr12 18169652 18170400 -126112089 - L1MA10 LINE L1 -14 6320 5587 10352 220 38 72 chr12 18170403 18171601 -126110888 - L1P5 LINE L1 -473 6386 5149 186 43 0 0 chr12 18171601 18171624 -126110865 + (TTG)n Simple_repeat Simple_repeat 2 24 0 10352 220 38 72 chr12 18171624 18172434 -126110055 - L1P5 LINE L1 -1710 5149 4313 2138 103 23 7 chr12 18172434 18172735 -126109754 - AluSc SINE Alu 0 309 4 10352 220 38 72 chr12 18172735 18173339 -126109150 - L1P5 LINE L1 -2546 4313 3690 1804 172 0 23 chr12 18173339 18173642 -126108847 - AluJb SINE Alu -16 296 1 10352 220 38 72 chr12 18173642 18174694 -126107795 - L1P5 LINE L1 -3169 3690 2604 1615 112 0 0 chr12 18174694 18174940 -126107549 - AluSg/x SINE Alu 0 314 69 10352 220 38 72 chr12 18174940 18176384 -126106105 - L1P5 LINE L1 -4255 2604 1346 293 279 0 0 chr12 18176389 18176468 -126106021 - L1P5 LINE L1 -5299 1550 1472 329 399 29 78 chr12 18176486 18176767 -126105722 - L1M2 LINE L1 -5736 1113 847 332 316 58 19 chr12 18177172 18177327 -126105162 - L1P5 LINE L1 -5244 1595 1435 703 367 28 40 chr12 18177520 18177860 -126104629 - L1P5 LINE L1 -6320 519 185 1026 31 8 0 chr12 18177860 18177990 -126104499 - L1PA5 LINE L1 0 6154 6024 703 367 28 40 chr12 18177990 18178120 -126104369 - L1P5 LINE L1 -6654 185 55 260 186 0 0 chr12 18178140 18178183 -126104306 + tRNA-Met-e tRNA tRNA 1 43 -32 1649 258 96 70 chr12 18178185 18179299 -126103190 - L1M4 LINE L1 -1942 4204 3033 2246 106 0 7 chr12 18179299 18179600 -126102889 - AluSg1 SINE Alu -10 299 1 1649 258 96 70 chr12 18179600 18180103 -126102386 - L1M4 LINE L1 -3113 3033 2545 584 159 148 39 chr12 18180121 18180303 -126102186 - L1MA9 LINE L1 -7 6305 6104 487 290 76 20 chr12 18180316 18180619 -126101870 - L1MEc LINE L1 -5579 817 498 213 39 0 0 chr12 18180719 18180745 -126101744 + (TC)n Simple_repeat Simple_repeat 1 26 0 509 313 70 9 chr12 18180828 18181058 -126101431 - L1MEc LINE L1 -6117 279 36 366 190 13 0 chr12 18182546 18182625 -126099864 + L1MA4A LINE L1 6201 6280 -23 373 297 22 0 chr12 18182713 18182804 -126099685 - L2 LINE L2 -2 3270 3178 330 26 0 0 chr12 18185751 18185790 -126096699 + (CA)n Simple_repeat Simple_repeat 2 40 0 183 80 0 0 chr12 18186239 18186264 -126096225 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr12 18187229 18187251 -126095238 + AT_rich Low_complexity Low_complexity 1 22 0 404 309 7 37 chr12 18188939 18189075 -126093414 - L2 LINE L2 0 3313 3182 2004 112 26 3 chr12 18189085 18189388 -126093101 + AluSg SINE Alu 1 310 0 208 372 54 20 chr12 18189797 18189945 -126092544 - L2 LINE L2 -908 2406 2254 414 268 0 0 chr12 18189945 18190057 -126092432 + L1MC1 LINE L1 4272 4383 -1763 * 5409 193 13 16 chr12 18190050 18190571 -126091918 + L1MC1 LINE L1 4602 5123 -1210 1352 101 64 14 chr12 18190571 18190789 -126091700 - MER30 DNA MER1_type -1 229 1 5409 193 13 16 chr12 18190789 18191916 -126090573 + L1MC1 LINE L1 5123 6239 -94 275 291 233 35 chr12 18191916 18192229 -126090260 - L2 LINE L2 -1077 2237 1863 196 151 19 19 chr12 18193430 18193483 -126089006 + CT-rich Low_complexity Low_complexity 4 56 0 2099 134 10 0 chr12 18193484 18193790 -126088699 - AluSg SINE Alu -1 309 1 358 319 21 7 chr12 18193790 18193934 -126088555 + CT-rich Low_complexity Low_complexity 2 147 0 1236 198 30 106 chr12 18193980 18194385 -126088104 + MLT1A2 LTR MaLR 1 374 0 242 266 44 80 chr12 18195820 18195933 -126086556 - L2 LINE L2 0 3313 3205 370 304 74 89 chr12 18195964 18196290 -126086199 + MLT1K LTR MaLR 262 582 -6 25 0 0 0 chr12 18196392 18196417 -126086072 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr12 18198623 18198644 -126083845 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr12 18199124 18199156 -126083333 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr12 18199257 18199287 -126083202 + AT_rich Low_complexity Low_complexity 1 30 0 941 188 74 10 chr12 18199445 18199647 -126082842 - MER20 DNA MER1_type -4 215 1 6841 158 21 11 chr12 18199729 18200990 -126081499 - L1P LINE L1 -831 5315 4055 5501 93 15 48 chr12 18200989 18201850 -126080639 + L1PA12 LINE L1 5336 6168 0 * 1639 212 33 12 chr12 18202464 18202799 -126079690 + MER2 DNA MER2_type 1 342 -3 1967 139 17 0 chr12 18202849 18203144 -126079345 - AluSx SINE Alu -12 300 1 944 109 14 12 chr12 18203337 18204341 -126078148 + HSATII Satellite Satellite 1 1005 -44 607 137 7 7 chr12 18204357 18204496 -126077993 + HSATII Satellite Satellite 19 157 -13 2319 94 3 0 chr12 18204779 18205087 -126077402 + AluY SINE Alu 1 309 -2 2463 263 75 54 chr12 18205378 18207054 -126075435 + L1M4 LINE L1 2804 4514 -1632 1391 288 31 27 chr12 18207054 18207122 -126075367 + HERVL40 LTR ERVL 3774 3840 -1690 2324 70 10 0 chr12 18207122 18207422 -126075067 - AluY SINE Alu -8 303 1 1391 288 31 27 chr12 18207422 18207836 -126074653 + HERVL40 LTR ERVL 3840 4258 -1272 1651 148 39 36 chr12 18207864 18208195 -126074294 + THE1C LTR MaLR 21 352 -23 5724 216 34 24 chr12 18208322 18211156 -126071333 - L1 LINE L1 -2711 4497 1614 1919 266 31 62 chr12 18211189 18211831 -126070658 - L1 LINE L1 -6567 642 21 628 173 70 0 chr12 18211861 18212008 -126070481 + LTR40b LTR ERVL 327 462 0 1595 270 77 24 chr12 18212008 18212339 -126070150 - L1MDa LINE L1 -2026 4189 3877 2132 88 3 50 chr12 18212339 18212656 -126069833 - AluSp SINE Alu -9 304 3 1595 270 77 24 chr12 18212656 18214578 -126067911 - L1MDa LINE L1 -2338 3877 1306 303 284 13 19 chr12 18214720 18214875 -126067614 - L1MDa LINE L1 -5230 1166 1013 986 179 19 24 chr12 18214984 18215191 -126067298 - L1M3 LINE L1 -626 5793 5588 291 30 0 0 chr12 18215191 18215224 -126067265 + U6 snRNA snRNA 1 33 -74 8344 234 78 37 chr12 18215224 18217600 -126064889 - L1M3 LINE L1 -782 5600 3322 1517 188 33 0 chr12 18217600 18217872 -126064617 + AluSx SINE Alu 1 281 -31 8344 234 78 37 chr12 18217872 18217890 -126064599 - L1M3 LINE L1 -3060 3322 3306 186 43 0 0 chr12 18217890 18217913 -126064576 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 8344 234 78 37 chr12 18217913 18220593 -126061896 - L1M3 LINE L1 -3076 3306 306 252 214 0 0 chr12 18220695 18220751 -126061738 + (TA)n Simple_repeat Simple_repeat 1 56 0 183 80 0 0 chr12 18220752 18220777 -126061712 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 931 252 50 27 chr12 18220779 18221116 -126061373 - MLT2D LTR ERVL -69 345 1 1157 235 50 4 chr12 18221116 18221397 -126061092 - L1M3 LINE L1 -6075 309 16 2433 137 3 3 chr12 18221434 18221798 -126060691 + THE1B LTR MaLR 1 364 0 709 23 0 0 chr12 18221870 18221958 -126060531 + L1PA3 LINE L1 6068 6155 0 982 251 50 56 chr12 18222495 18222873 -126059616 + MLT1B LTR MaLR 13 388 -2 276 344 45 25 chr12 18223969 18224126 -126058363 + MIR SINE MIR 101 260 -2 32 43 0 0 chr12 18224626 18224672 -126057817 + AT_rich Low_complexity Low_complexity 1 46 0 196 151 19 19 chr12 18224711 18224764 -126057725 + GA-rich Low_complexity Low_complexity 4 56 0 482 330 59 17 chr12 18226159 18226395 -126056094 - L2 LINE L2 -212 3101 2856 468 299 164 5 chr12 18226416 18226630 -126055859 - LTR16A1 LTR ERVL -30 427 180 320 372 28 7 chr12 18226804 18226949 -126055540 - L2 LINE L2 -602 2712 2565 2362 75 0 10 chr12 18227566 18227873 -126054616 + AluY SINE Alu 1 304 -7 378 0 0 0 chr12 18230215 18230257 -126052232 + (TG)n Simple_repeat Simple_repeat 1 42 0 2210 109 10 0 chr12 18230291 18230585 -126051904 - AluSx SINE Alu -15 297 1 440 126 11 0 chr12 18230746 18230833 -126051656 + (TC)n Simple_repeat Simple_repeat 1 88 0 1034 99 19 0 chr12 18232472 18232634 -126049855 + L1PA12 LINE L1 5883 6047 -121 258 386 79 7 chr12 18232757 18232897 -126049592 + L2 LINE L2 3121 3270 -2 28 0 0 0 chr12 18232940 18232968 -126049521 + AT_rich Low_complexity Low_complexity 1 28 0 226 256 237 38 chr12 18233726 18233937 -126048552 - LTR16C LTR ERVL -79 412 160 354 23 0 0 chr12 18235273 18235316 -126047173 + (TG)n Simple_repeat Simple_repeat 1 43 0 2238 242 107 9 chr12 18235328 18236120 -126046369 - MER63C DNA MER1_type -14 916 47 40 21 0 0 chr12 18236179 18236226 -126046263 + AT_rich Low_complexity Low_complexity 1 47 0 41992 42 1 2 chr12 18236330 18242519 -126039970 + L1PA3 LINE L1 9 6190 0 3233 149 76 18 chr12 18243362 18243979 -126038510 - MER39B LTR ERV1 0 653 1 327 364 115 16 chr12 18244495 18244869 -126037620 - L1ME LINE L1 -463 5699 5289 3939 146 46 60 chr12 18245451 18246462 -126036027 + pTR5 LTR ERV1 741 2029 -409 241 277 11 0 chr12 18246462 18246556 -126035933 + LTR30 LTR ERV1 548 642 -80 1456 90 0 9 chr12 18246559 18246782 -126035707 + pTR5 LTR ERV1 172 392 -2046 584 291 45 39 chr12 18246787 18247120 -126035369 - L1ME LINE L1 -1440 4706 4372 392 316 91 19 chr12 18247298 18247507 -126034982 - L1ME LINE L1 -1817 4329 4106 1486 167 51 4 chr12 18248297 18248572 -126033917 + Ricksha_b DNA DNA 1 288 -966 2903 140 32 13 chr12 18248591 18248956 -126033533 - L1PB3 LINE L1 0 6154 5774 408 82 0 0 chr12 18248956 18249017 -126033472 + (TG)n Simple_repeat Simple_repeat 2 62 0 2903 140 32 13 chr12 18249017 18249180 -126033309 - L1PB3 LINE L1 -380 5774 5616 2945 128 66 53 chr12 18249180 18249742 -126032747 + LTR12 LTR ERV1 13 581 -133 5540 197 51 27 chr12 18249742 18251446 -126031043 - L1PBb LINE L1 -2315 3888 2227 428 123 0 0 chr12 18251446 18251519 -126030970 - MER41B LTR ERV1 -81 554 482 5540 197 51 27 chr12 18251519 18253515 -126028974 - L1PBb LINE L1 -3976 2227 18 3206 286 39 43 chr12 18253514 18255125 -126027364 - L1PBa LINE L1 -5256 1607 3 * 5278 159 21 12 chr12 18255148 18255945 -126026544 + Ricksha_b DNA DNA 274 1082 -1772 2463 62 0 7 chr12 18255945 18256251 -126026238 - AluY SINE Alu -7 304 1 5278 159 21 12 chr12 18256251 18256419 -126026070 + Ricksha_b DNA DNA 1082 1247 -7 230 222 56 0 chr12 18256638 18256692 -126025797 - ORSL DNA AcHobo -218 57 1 800 271 28 0 chr12 18256899 18257117 -126025372 + MER58A DNA MER1_type 1 224 0 301 336 168 0 chr12 18258004 18258153 -126024336 + MIR3 SINE MIR 28 201 -7 272 175 16 0 chr12 18258315 18258378 -126024111 + CT-rich Low_complexity Low_complexity 2 65 0 1367 163 117 72 chr12 18259903 18260332 -126022157 - LTR7 LTR ERV1 -2 448 1 2429 69 45 13 chr12 18260332 18260710 -126021779 - HERVH LTR ERV1 0 7713 7324 1039 148 84 5 chr12 18260710 18260912 -126021577 - HERVH LTR ERV1 -1894 5819 5602 4081 148 0 1 chr12 18260919 18261581 -126020908 - HERVH LTR ERV1 -2564 5149 4489 3179 116 4 8 chr12 18261576 18262087 -126020402 - HERVH LTR ERV1 -3713 4000 3492 * 854 128 20 0 chr12 18262077 18262225 -126020264 - HERVH LTR ERV1 -4423 3290 3140 * 2410 110 0 10 chr12 18262219 18262602 -126019887 - HERVH LTR ERV1 -4726 2987 2609 * 15437 83 49 8 chr12 18262595 18264942 -126017547 - HERVH LTR ERV1 -5269 2444 1 1451 135 123 79 chr12 18264944 18265373 -126017116 - LTR7 LTR ERV1 -2 448 1 1691 165 43 4 chr12 18265498 18265777 -126016712 - AluJb SINE Alu -22 290 1 1706 207 114 79 chr12 18265918 18266682 -126015807 + LTR1B LTR ERV1 1 983 -37 471 316 48 19 chr12 18267065 18267297 -126015192 + MIR SINE MIR 22 260 -2 217 256 103 86 chr12 18267331 18267448 -126015041 + L2 LINE L2 3154 3272 0 274 365 66 17 chr12 18267594 18267775 -126014714 + MIR3 SINE MIR 16 205 -3 22 35 0 0 chr12 18269157 18269186 -126013303 + AT_rich Low_complexity Low_complexity 1 29 0 1517 261 53 34 chr12 18269827 18270333 -126012156 - LTR40a LTR ERVL -1 518 3 193 362 63 39 chr12 18270875 18271002 -126011487 + MIR3 SINE MIR 3 132 -76 23 0 0 0 chr12 18271642 18271665 -126010824 + AT_rich Low_complexity Low_complexity 1 23 0 246 62 0 0 chr12 18271665 18271697 -126010792 + (TA)n Simple_repeat Simple_repeat 1 32 0 24 0 0 0 chr12 18271709 18271733 -126010756 + AT_rich Low_complexity Low_complexity 1 24 0 261 339 91 0 chr12 18272514 18272635 -126009854 - MIR SINE MIR -78 184 53 304 309 0 21 chr12 18272736 18272830 -126009659 - MIR SINE MIR -12 250 159 423 278 191 6 chr12 18272854 18273027 -126009462 + MIR SINE MIR 32 236 -26 198 311 14 27 chr12 18273780 18273854 -126008635 - MIR SINE MIR -182 80 8 2444 55 0 0 chr12 18273893 18274183 -126008306 - AluY SINE Alu -21 290 1 955 324 98 8 chr12 18274855 18275232 -126007257 + LTR16B LTR ERVL 1 411 -53 262 319 22 43 chr12 18275330 18275562 -126006927 + MLT1H LTR MaLR 54 280 -269 243 246 3 0 chr12 18275683 18275750 -126006739 + MLT1H LTR MaLR 475 549 0 699 217 0 92 chr12 18276492 18276732 -126005757 - MER20 DNA MER1_type 0 219 2 1497 225 74 0 chr12 18276793 18277131 -126005358 + MLT1A1 LTR MaLR 1 363 -2 28 0 0 0 chr12 18278326 18278354 -126004135 + AT_rich Low_complexity Low_complexity 1 28 0 3288 114 28 2 chr12 18278467 18278965 -126003524 - MER75 DNA T2_type -3 511 1 316 347 34 0 chr12 18278967 18279114 -126003375 + L1M3c LINE L1 1228 1379 -4762 385 224 0 0 chr12 18279137 18279213 -126003276 + MLT1A1 LTR MaLR 1 76 -320 1774 174 30 75 chr12 18279214 18279651 -126002838 + MSTB1 LTR MaLR 1 417 -15 848 187 43 135 chr12 18279666 18279992 -126002497 + MLT1A1 LTR MaLR 70 365 0 242 348 30 6 chr12 18280401 18280565 -126001924 + L1MEc LINE L1 1624 1791 -4605 319 291 0 80 chr12 18280790 18280941 -126001548 + L1MEc LINE L1 2158 2296 -4100 249 289 50 75 chr12 18280977 18281379 -126001110 + L1MEc LINE L1 2293 2684 -3531 492 251 242 6 chr12 18281427 18281762 -126000727 + L1MEc LINE L1 2805 3218 -2997 316 312 74 50 chr12 18281790 18282287 -126000202 + L1MEc LINE L1 3309 3817 -2398 717 259 7 0 chr12 18282309 18282452 -126000037 - MER82 DNA MER2_type -20 633 490 1743 131 115 35 chr12 18282482 18282796 -125999693 - MER1B DNA MER1_type 0 339 1 * 1769 231 39 18 chr12 18282796 18283231 -125999258 - MER82 DNA MER2_type -209 444 1 488 249 92 29 chr12 18284103 18284276 -125998213 - MLT1J1 LTR MaLR -246 200 17 2249 88 3 19 chr12 18285091 18285398 -125997091 - AluY SINE Alu -9 302 1 274 274 91 89 chr12 18286439 18286855 -125995634 + MLT1J LTR MaLR 1 417 -94 19693 52 27 2 chr12 18286934 18290217 -125992272 + L1PA5 LINE L1 2838 6154 0 26 0 0 0 chr12 18290217 18290243 -125992246 + AT_rich Low_complexity Low_complexity 1 26 0 799 250 60 116 chr12 18290729 18291109 -125991380 - L2 LINE L2 -762 2552 2194 470 305 102 80 chr12 18291570 18291732 -125990757 - L1MEd LINE L1 -5286 833 676 2069 99 0 14 chr12 18291732 18292026 -125990463 - AluSg SINE Alu -18 292 3 470 305 102 80 chr12 18292026 18292325 -125990164 - L1MEd LINE L1 -5443 676 362 2082 164 11 6 chr12 18293239 18293599 -125988890 - MLT1A1 LTR MaLR 0 365 4 216 308 15 0 chr12 18295424 18295489 -125987000 + MIR SINE MIR 4 69 -193 1982 176 12 0 chr12 18297204 18297534 -125984955 + MER7A DNA MER2_type 2 333 -13 355 259 0 12 chr12 18298139 18298220 -125984269 - L2 LINE L2 -4 3309 3230 580 306 24 60 chr12 18299821 18300190 -125982299 + MARNA DNA Mariner 24 379 -207 203 59 0 29 chr12 18300279 18300313 -125982176 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 604 255 20 7 chr12 18300314 18300463 -125982026 - FAM SINE Alu -34 151 1 399 289 44 63 chr12 18300764 18300923 -125981566 - MIR3 SINE MIR -14 194 39 913 151 0 6 chr12 18301365 18301640 -125980849 - AluSc SINE Alu 0 425 152 828 93 8 0 chr12 18301644 18301762 -125980727 + AluSq/x SINE Alu 15 133 -179 1641 247 3 6 chr12 18301816 18302180 -125980309 - MLT1A1 LTR MaLR 0 365 3 1196 350 45 38 chr12 18302787 18303441 -125979048 - L2 LINE L2 -308 3005 2341 1980 209 35 0 chr12 18303441 18303843 -125978646 - MER47B DNA MER2_type -1 417 2 1196 350 45 38 chr12 18303843 18303943 -125978546 - L2 LINE L2 -972 2341 2243 357 332 104 26 chr12 18304041 18304348 -125978141 - L2 LINE L2 -1343 1971 1641 420 188 10 62 chr12 18304746 18304824 -125977665 - 5S rRNA rRNA -30 91 17 1959 152 52 17 chr12 18304824 18305186 -125977303 + THE1C LTR MaLR 1 375 0 420 188 10 62 chr12 18305186 18305203 -125977286 - 5S rRNA rRNA -104 17 1 187 254 0 51 chr12 18305383 18305442 -125977047 - MIR SINE MIR -103 159 104 25 0 0 0 chr12 18305674 18305699 -125976790 + AT_rich Low_complexity Low_complexity 1 25 0 256 300 20 87 chr12 18305897 18306047 -125976442 + L3 LINE CR1 123 262 -1315 338 322 154 7 chr12 18306957 18307106 -125975383 + MER5A DNA MER1_type 1 171 -18 1466 245 94 6 chr12 18307106 18307575 -125974914 - L1ME3A LINE L1 -17 6153 5644 844 245 53 39 chr12 18307581 18307961 -125974528 - MER67C LTR ERV1 -8 506 145 3379 188 59 9 chr12 18307973 18308714 -125973775 + L1 LINE L1 4461 5238 -908 787 176 35 0 chr12 18308715 18308857 -125973632 - MER67D LTR ERV1 -367 147 1 452 215 209 34 chr12 18308865 18309042 -125973447 - L1ME3A LINE L1 -528 5642 5435 332 299 76 21 chr12 18309049 18309340 -125973149 - L1ME3A LINE L1 -2170 3976 3670 454 242 0 0 chr12 18309377 18309468 -125973021 - U6 snRNA snRNA -16 91 1 204 135 0 0 chr12 18309535 18309572 -125972917 + (TCC)n Simple_repeat Simple_repeat 2 38 0 333 330 66 63 chr12 18310258 18310715 -125971774 - L2 LINE L2 -1292 2022 1565 359 290 22 65 chr12 18311742 18311880 -125970609 + MLT1J LTR MaLR 149 280 -231 1470 136 16 4 chr12 18312206 18312464 -125970025 + L1MA4 LINE L1 6034 6294 -6 776 138 109 14 chr12 18312597 18312735 -125969754 - FRAM SINE Alu -26 150 1 378 61 0 0 chr12 18313397 18313446 -125969043 + (A)n Simple_repeat Simple_repeat 1 49 0 200 290 75 32 chr12 18314648 18314741 -125967748 - MIR SINE MIR -92 170 74 303 268 107 42 chr12 18315455 18315623 -125966866 - L1MC/D LINE L1 -2256 5552 5374 207 167 0 0 chr12 18316078 18316114 -125966375 + (TG)n Simple_repeat Simple_repeat 1 36 0 207 206 48 0 chr12 18316320 18316383 -125966106 + T-rich Low_complexity Low_complexity 2 67 0 2472 160 29 35 chr12 18316596 18316967 -125965522 - L1MA8 LINE L1 -4 6287 5918 2031 163 9 0 chr12 18316967 18317311 -125965178 - MER7A DNA MER2_type 0 346 2 2472 160 29 35 chr12 18317311 18317458 -125965031 - L1MA8 LINE L1 -373 5918 5772 1313 261 50 2 chr12 18317458 18317940 -125964549 - L1M3c LINE L1 -4548 2550 2046 1062 200 9 14 chr12 18317947 18318167 -125964322 - AluJo SINE Alu -7 305 87 738 343 31 22 chr12 18318167 18318584 -125963905 - L1M3c LINE L1 -5156 2012 1592 2437 177 69 88 chr12 18318606 18319347 -125963142 - LTR8A LTR ERV1 0 727 1 2363 139 125 32 chr12 18319988 18320064 -125962425 - LTR10A LTR ERV1 0 547 479 2380 73 7 0 chr12 18320064 18320367 -125962122 - AluSp SINE Alu -7 306 2 2363 139 125 32 chr12 18320367 18320801 -125961688 - LTR10A LTR ERV1 -68 479 2 274 137 20 20 chr12 18320824 18320875 -125961614 - LTR10B LTR ERV1 -496 51 1 604 284 49 18 chr12 18321096 18321381 -125961108 - L1MCc LINE L1 -1524 5417 5124 509 155 39 19 chr12 18321381 18321531 -125960958 - AluJb SINE Alu 0 329 178 359 200 14 0 chr12 18321648 18321718 -125960771 + MLT2B3 LTR ERVL 1 71 -483 1847 210 89 59 chr12 18321809 18322281 -125960208 + MLT2B3 LTR ERVL 69 554 0 809 293 17 0 chr12 18322321 18322560 -125959929 + L1M4 LINE L1 3896 4138 -2008 355 245 9 19 chr12 18322581 18322687 -125959802 - L1MCc LINE L1 -2667 4274 4170 * 399 268 16 22 chr12 18322684 18322867 -125959622 + L1M4 LINE L1 4143 4324 -1822 679 289 30 4 chr12 18322884 18323154 -125959335 - L1M4 LINE L1 -1538 5403 5127 354 23 0 0 chr12 18323159 18323202 -125959287 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1580 187 7 4 chr12 18323202 18323475 -125959014 - AluJb SINE Alu -28 284 11 928 266 94 52 chr12 18323475 18324733 -125957756 - L1MCc LINE L1 -3058 3883 2608 342 255 88 42 chr12 18324859 18325051 -125957438 - L1MCc LINE L1 -4670 2271 2071 1644 313 98 48 chr12 18325139 18326921 -125955568 - L1MCc LINE L1 -4887 1536 19 1534 255 104 18 chr12 18327693 18328136 -125954353 - MLT1E1 LTR MaLR 0 654 174 331 338 48 61 chr12 18328524 18328736 -125953753 - L2 LINE L2 -285 3028 2815 3039 153 17 57 chr12 18328736 18329313 -125953176 - MLT2B3 LTR ERVL 0 554 1 331 338 48 61 chr12 18329313 18329561 -125952928 - L2 LINE L2 -498 2815 2575 26 0 0 0 chr12 18329670 18329696 -125952793 + AT_rich Low_complexity Low_complexity 1 26 0 411 322 155 47 chr12 18330886 18331330 -125951159 + LTR33 LTR ERVL 2 493 -28 404 350 120 43 chr12 18332262 18332636 -125949853 + L2 LINE L2 2898 3300 -13 680 203 75 43 chr12 18332731 18332918 -125949571 - MLT2D LTR ERVL 0 414 222 1836 163 38 27 chr12 18383113 18383482 -125899007 + THE1C LTR MaLR 1 373 -2 428 261 87 81 chr12 18383712 18384142 -125898347 + MLT1E3 LTR MaLR 1 415 -211 4033 186 32 66 chr12 18384288 18385512 -125896977 - L1P5 LINE L1 -592 5559 4398 234 0 0 0 chr12 18385512 18385538 -125896951 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 4033 186 32 66 chr12 18385538 18385791 -125896698 - L1P5 LINE L1 -1753 4398 4138 26 0 0 0 chr12 18385842 18385868 -125896621 + AT_rich Low_complexity Low_complexity 1 26 0 2631 128 68 0 chr12 18386067 18386481 -125896008 + THE1B-int LTR MaLR 1133 1574 -6 2074 167 28 0 chr12 18386486 18386840 -125895649 + THE1B LTR MaLR 1 364 0 8862 144 46 45 chr12 18386847 18389596 -125892893 - L1PBa LINE L1 -2848 4014 1116 1953 145 13 0 chr12 18389604 18389915 -125892574 - L1PBa LINE L1 -5814 1049 735 3710 25 2 0 chr12 18390016 18390458 -125892031 + L1PA2 LINE L1 5712 6154 -1 675 274 62 59 chr12 18391445 18391784 -125890705 + MLT1K LTR MaLR 227 566 -22 337 333 0 10 chr12 18392182 18392278 -125890211 - MIR SINE MIR -150 112 18 2265 243 26 87 chr12 18392802 18393581 -125888908 - MLT-int LTR MaLR -598 1137 407 788 243 23 0 chr12 18393581 18393758 -125888731 + L1MA5 LINE L1 5613 5793 -504 2344 179 18 16 chr12 18393803 18394295 -125888194 + L1MA5 LINE L1 5784 6276 -24 369 0 0 0 chr12 18394324 18394365 -125888124 + (TG)n Simple_repeat Simple_repeat 2 42 0 300 231 13 26 chr12 18394366 18394444 -125888045 - MLT-int LTR MaLR -1319 416 340 9653 151 6 21 chr12 18394546 18396133 -125886356 + Harlequin LTR ERV1 3335 4896 -2917 * 12775 191 12 7 chr12 18396129 18398416 -125884073 + Harlequin LTR ERV1 5469 7766 -47 526 211 10 0 chr12 18398410 18398514 -125883975 + Harlequin LTR ERV1 6747 6851 -45 * 23022 26 10 0 chr12 18398615 18401662 -125880827 + L1P1 LINE L1 2585 5661 -494 10429 172 34 18 chr12 18401765 18403712 -125878777 - HERVE LTR ERV1 -5834 1979 1 1487 245 46 23 chr12 18403712 18404148 -125878341 - LTR2 LTR ERV1 0 449 4 5068 209 28 3 chr12 18404150 18405452 -125877037 + L1PB1 LINE L1 4095 5428 -738 2328 111 28 3 chr12 18405553 18405946 -125876543 + L1PB1 LINE L1 5773 6174 0 291 357 60 30 chr12 18407016 18407285 -125875204 - L2 LINE L2 -445 2869 2593 2601 36 3 0 chr12 18407332 18407637 -125874852 + AluYb8 SINE Alu 1 306 -12 205 304 80 54 chr12 18407866 18407978 -125874511 + MIR SINE MIR 112 226 -36 21 36 0 0 chr12 18409590 18409618 -125872871 + AT_rich Low_complexity Low_complexity 1 28 0 316 236 0 73 chr12 18409823 18409853 -125872636 + L1MC4 LINE L1 6602 6633 -1409 2310 74 0 3 chr12 18409853 18410138 -125872351 + AluY SINE Alu 13 296 -15 316 236 0 73 chr12 18410138 18410217 -125872272 + L1MC4 LINE L1 6633 6703 -1339 1443 278 29 22 chr12 18410885 18411335 -125871154 + LTR16B LTR ERVL 1 453 -11 307 301 114 34 chr12 18411456 18411632 -125870857 - L2 LINE L2 0 3313 3124 1052 336 91 26 chr12 18411648 18412298 -125870191 - L2 LINE L2 -311 3002 2308 21 57 0 0 chr12 18415649 18415684 -125866805 + AT_rich Low_complexity Low_complexity 1 35 0 524 309 70 31 chr12 18415902 18415996 -125866493 + L1MEc LINE L1 1081 1170 -5226 2068 139 3 0 chr12 18415996 18416297 -125866192 + AluSg SINE Alu 1 302 -8 524 309 70 31 chr12 18416297 18416787 -125865702 + L1MEc LINE L1 1170 1688 -4708 * 5158 87 8 19 chr12 18416775 18417650 -125864839 + L1P1 LINE L1 4614 5478 -694 21 36 0 0 chr12 18418406 18418434 -125864055 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr12 18418587 18418612 -125863877 + AT_rich Low_complexity Low_complexity 1 25 0 943 42 25 0 chr12 18418939 18419058 -125863431 - L1P LINE L1 -1852 4294 4173 539 95 0 0 chr12 18419071 18419155 -125863334 + L1P1 LINE L1 5459 5542 -613 469 225 109 14 chr12 18419291 18419429 -125863060 + L2 LINE L2 1377 1527 -1787 1259 336 152 2 chr12 18419430 18419995 -125862494 + L2 LINE L2 2006 2655 -659 1090 164 82 86 chr12 18420006 18420262 -125862227 - Tigger3(Golem) DNA MER2_type -2773 256 2 1035 278 57 39 chr12 18420809 18421251 -125861238 + L1MCc LINE L1 17 466 -5957 1090 279 72 63 chr12 18421326 18422478 -125860011 + L1MCc LINE L1 655 1822 -4938 722 282 52 134 chr12 18422696 18423352 -125859137 + L1MDa LINE L1 34 635 -5905 1123 263 75 18 chr12 18423613 18424283 -125858206 + L1MDa LINE L1 2159 2832 -3708 334 159 171 0 chr12 18424295 18424383 -125858106 + L1MDa LINE L1 3903 4005 -2535 * 1002 189 52 21 chr12 18424362 18424595 -125857894 + L1MC1 LINE L1 6479 6718 -9 1307 227 3 7 chr12 18424604 18424890 -125857599 + L1MDa LINE L1 4181 4465 -2075 289 185 120 20 chr12 18424985 18425085 -125857404 + L1ME1 LINE L1 36 254 -6289 316 185 0 109 chr12 18425115 18425207 -125857282 + L1ME1 LINE L1 4500 4581 -1959 227 284 12 0 chr12 18425302 18425383 -125857106 + (TA)n Simple_repeat Simple_repeat 1 82 0 2518 243 45 31 chr12 18425436 18426584 -125855905 + L1ME1 LINE L1 4800 5958 -602 1095 194 18 98 chr12 18426593 18426939 -125855550 + MLT1B LTR MaLR 59 377 -13 1628 264 80 9 chr12 18426943 18427507 -125854982 + L1ME1 LINE L1 5952 6555 -5 224 401 35 7 chr12 18427862 18428004 -125854485 + MIR3 SINE MIR 40 185 -23 306 106 0 0 chr12 18428102 18428149 -125854340 + (CCTA)n Simple_repeat Simple_repeat 3 49 0 21 0 0 0 chr12 18428261 18428282 -125854207 + AT_rich Low_complexity Low_complexity 1 21 0 1792 142 7 0 chr12 18428323 18428605 -125853884 + AluSx SINE Alu 1 284 -28 3797 39 0 0 chr12 18428605 18429062 -125853427 + L1PA3 LINE L1 5696 6152 -3 503 310 116 38 chr12 18429322 18429641 -125852848 + L3 LINE CR1 1230 1573 -4 345 272 40 48 chr12 18429682 18429807 -125852682 + L3 LINE CR1 1337 1460 -117 1704 255 48 10 chr12 18430405 18430820 -125851669 - MLT1F1 LTR MaLR 0 567 137 21 36 0 0 chr12 18432575 18432603 -125849886 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr12 18433043 18433075 -125849414 + AT_rich Low_complexity Low_complexity 1 32 0 1992 170 49 30 chr12 18433142 18433548 -125848941 - MLT2D LTR ERVL 0 414 1 2560 40 0 3 chr12 18434794 18435095 -125847394 + AluY SINE Alu 11 310 -1 3292 175 6 38 chr12 18435107 18435800 -125846689 + L1PA16 LINE L1 5479 6149 -17 28 71 0 0 chr12 18435927 18435983 -125846506 + AT_rich Low_complexity Low_complexity 1 56 0 795 297 112 24 chr12 18436043 18436383 -125846106 - L2 LINE L2 -535 2779 2410 678 197 7 29 chr12 18436457 18436594 -125845895 + THE1C LTR MaLR 3 136 -239 373 211 11 11 chr12 18436594 18436684 -125845805 + L1PA16 LINE L1 6060 6149 -17 1158 148 20 15 chr12 18436879 18437091 -125845398 + THE1C LTR MaLR 143 355 0 21 0 0 0 chr12 18437304 18437325 -125845164 + AT_rich Low_complexity Low_complexity 1 21 0 2256 78 0 36 chr12 18437562 18437871 -125844618 + AluY SINE Alu 1 298 -13 228 178 22 0 chr12 18438454 18438499 -125843990 + A-rich Low_complexity Low_complexity 2 47 0 263 378 68 55 chr12 18439240 18439621 -125842868 - L2 LINE L2 0 3313 2928 1394 234 8 44 chr12 18440049 18440437 -125842052 + MLT1A2 LTR MaLR 1 374 0 442 362 5 9 chr12 18440529 18440739 -125841750 + L2 LINE L2 2152 2360 -954 418 216 0 0 chr12 18440835 18440909 -125841580 + MLT1H LTR MaLR 51 124 -425 5148 163 35 30 chr12 18440959 18442229 -125840260 - L1MA5 LINE L1 0 6300 5009 1916 146 33 3 chr12 18442229 18442531 -125839958 - AluSx SINE Alu -1 311 1 5148 163 35 30 chr12 18442531 18443023 -125839466 - L1MA5 LINE L1 -1291 5009 4521 343 280 75 0 chr12 18443033 18443140 -125839349 + MLT1H LTR MaLR 236 350 -199 352 349 35 12 chr12 18443298 18443467 -125839022 + L2 LINE L2 2757 2929 -385 435 147 33 7 chr12 18443497 18443647 -125838842 + (TA)n Simple_repeat Simple_repeat 2 155 0 564 273 33 112 chr12 18443661 18443991 -125838498 + L2 LINE L2 3010 3313 0 759 106 18 0 chr12 18444080 18444193 -125838296 - AluY SINE Alu 0 311 197 23 33 0 0 chr12 18444859 18444889 -125837600 + AT_rich Low_complexity Low_complexity 1 30 0 461 253 67 33 chr12 18444954 18445104 -125837385 - MLT1G LTR MaLR -2 588 434 281 340 58 16 chr12 18445356 18445544 -125836945 - MLT1F1 LTR MaLR -343 224 29 7430 203 22 12 chr12 18445544 18446161 -125836328 - L1P5 LINE L1 -708 5443 4833 2211 213 32 10 chr12 18446161 18446658 -125835831 + LTR22 LTR ERVK 1 508 -1 7430 203 22 12 chr12 18446658 18447827 -125834662 - L1P5 LINE L1 -1318 4833 3655 4498 105 4 28 chr12 18447827 18448528 -125833961 + L1PB1 LINE L1 5465 6151 0 230 152 0 0 chr12 18448556 18448589 -125833900 - tRNA-Lys-AAG tRNA tRNA -43 33 1 21 0 0 0 chr12 18448822 18448843 -125833646 + AT_rich Low_complexity Low_complexity 1 21 0 2094 118 13 3 chr12 18449187 18449492 -125832997 + AluSx SINE Alu 1 308 -4 324 279 44 22 chr12 18449987 18450123 -125832366 - MLT1-int LTR MaLR -910 461 323 979 235 32 4 chr12 18450125 18450372 -125832117 - L1MC3 LINE L1 0 7785 7532 36 23 0 0 chr12 18450409 18450452 -125832037 + AT_rich Low_complexity Low_complexity 1 43 0 1059 428 56 0 chr12 18450452 18450737 -125831752 - AluSx SINE Alu -1 301 1 23 0 0 0 chr12 18450788 18450811 -125831678 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr12 18451725 18451752 -125830737 + AT_rich Low_complexity Low_complexity 1 27 0 854 299 48 14 chr12 18452966 18453257 -125829232 + L2 LINE L2 1129 1429 -1885 765 226 62 57 chr12 18453291 18453465 -125829024 + MLT1E LTR MaLR 51 223 -370 596 151 33 46 chr12 18453465 18453587 -125828902 - L1MA8 LINE L1 -2 6289 6168 478 95 81 0 chr12 18453587 18453661 -125828828 + MADE1 DNA Mariner 1 80 0 596 151 33 46 chr12 18453661 18453690 -125828799 - L1MA8 LINE L1 -123 6168 6140 765 226 62 57 chr12 18453690 18454081 -125828408 + MLT1E LTR MaLR 223 591 -2 181 267 0 0 chr12 18454110 18454155 -125828334 + L2 LINE L2 1453 1497 -1817 1865 140 3 3 chr12 18454170 18454456 -125828033 - AluSx SINE Alu -20 292 7 2523 40 3 0 chr12 18454493 18454796 -125827693 - AluYa5 SINE Alu -7 304 1 258 32 0 0 chr12 18454879 18454910 -125827579 + (TG)n Simple_repeat Simple_repeat 2 32 0 318 288 9 9 chr12 18454992 18455103 -125827386 + (TA)n Simple_repeat Simple_repeat 1 111 0 1007 340 70 6 chr12 18455157 18455645 -125826844 + L2 LINE L2 1846 2364 -950 568 310 188 15 chr12 18455647 18456205 -125826284 + L2 LINE L2 2522 3179 -134 215 354 0 0 chr12 18456362 18456427 -125826062 - MIR SINE MIR -187 75 11 261 0 0 0 chr12 18457173 18457202 -125825287 + (GA)n Simple_repeat Simple_repeat 2 30 0 237 314 23 23 chr12 18458603 18458689 -125823800 + MIR SINE MIR 2 87 -175 253 267 38 29 chr12 18458713 18458818 -125823671 - MLT1L LTR MaLR -13 602 497 262 342 64 16 chr12 18458981 18459168 -125823321 + MLT1L LTR MaLR 368 563 -52 349 295 42 58 chr12 18459615 18459805 -125822684 + MIR SINE MIR 76 262 0 474 335 83 54 chr12 18459872 18460353 -125822136 + LTR33 LTR ERVL 26 520 -1 2300 90 3 10 chr12 18460390 18460702 -125821787 - AluSg SINE Alu 0 310 1 22 70 0 0 chr12 18460900 18460943 -125821546 + AT_rich Low_complexity Low_complexity 1 43 0 2186 96 3 0 chr12 18461061 18461343 -125821146 + AluSq SINE Alu 5 287 -26 2505 49 20 0 chr12 18461352 18461656 -125820833 + AluY SINE Alu 1 310 -1 456 292 113 35 chr12 18461823 18462107 -125820382 + LTR67 LTR ERVL 202 507 -50 1335 133 17 43 chr12 18462517 18462750 -125819739 - AluSp SINE Alu -86 227 1 232 172 31 16 chr12 18462830 18462894 -125819595 + (TATAA)n Simple_repeat Simple_repeat 5 69 0 1324 223 51 33 chr12 18462902 18463234 -125819255 - MER7A DNA MER2_type -10 336 1 1339 228 76 42 chr12 18463243 18463690 -125818799 - MLT1C LTR MaLR 0 467 6 305 280 0 50 chr12 18463920 18464020 -125818469 + L1ME4a LINE L1 5989 6083 -38 259 346 76 19 chr12 18464300 18464471 -125818018 + MIR SINE MIR 23 206 -56 211 140 70 0 chr12 18464781 18464838 -125817651 + (TTATA)n Simple_repeat Simple_repeat 1 61 0 235 146 18 36 chr12 18464950 18465005 -125817484 + (TA)n Simple_repeat Simple_repeat 1 54 0 1148 99 93 0 chr12 18465208 18465390 -125817099 - L1MA5A LINE L1 -12 6285 6087 27 0 0 0 chr12 18465631 18465658 -125816831 + AT_rich Low_complexity Low_complexity 1 27 0 2362 116 24 5 chr12 18465659 18466038 -125816451 - L1PA16 LINE L1 -9 6157 5772 722 314 21 42 chr12 18466068 18466683 -125815806 - L1ME3A LINE L1 -241 5929 5328 325 44 0 22 chr12 18467525 18467570 -125814919 + MLT2A2 LTR ERVL 407 450 -3 344 59 20 0 chr12 18467570 18467621 -125814868 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 351 0 0 0 chr12 18467698 18467737 -125814752 + (TA)n Simple_repeat Simple_repeat 1 39 0 287 267 23 61 chr12 18467766 18467897 -125814592 + L1MC4 LINE L1 7917 8042 0 369 322 61 26 chr12 18468075 18468305 -125814184 + L1ME LINE L1 3973 4210 -1936 2102 88 32 0 chr12 18468327 18468611 -125813878 - AluY SINE Alu -18 293 1 21 0 0 0 chr12 18468612 18468633 -125813856 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 18468687 18468708 -125813781 + (A)n Simple_repeat Simple_repeat 1 21 0 410 255 0 28 chr12 18468762 18468868 -125813621 + MER106B DNA MER1_type 21 123 -936 521 309 80 20 chr12 18468956 18469157 -125813332 - MLT1I LTR MaLR -52 357 145 369 225 0 0 chr12 18469157 18469246 -125813243 + (TA)n Simple_repeat Simple_repeat 1 89 0 229 214 71 12 chr12 18469251 18469335 -125813154 + L1MC4 LINE L1 6615 6703 -1339 242 322 0 0 chr12 18469351 18469441 -125813048 + L1MC4 LINE L1 6614 6703 -1339 486 252 0 0 chr12 18469442 18469573 -125812916 + (TA)n Simple_repeat Simple_repeat 1 131 0 234 337 0 0 chr12 18469579 18469668 -125812821 - L1MC4 LINE L1 -1340 6702 6614 * 262 284 23 0 chr12 18469644 18469732 -125812757 + L1MC4 LINE L1 6614 6703 -1339 249 172 0 35 chr12 18469702 18469760 -125812729 - L1MC4 LINE L1 -1339 6703 6648 * 325 296 39 61 chr12 18470011 18470241 -125812248 + L1ME LINE L1 4550 4774 -1372 403 275 117 39 chr12 18470280 18470950 -125811539 + L1ME LINE L1 4862 5575 -587 2737 138 9 0 chr12 18471240 18471714 -125810775 - THE1B-int LTR MaLR -1150 430 1 1895 164 25 33 chr12 18471714 18471891 -125810598 - THE1B LTR MaLR 0 364 187 2491 14 0 0 chr12 18471891 18472166 -125810323 + AluYa5 SINE Alu 37 311 0 1895 164 25 33 chr12 18472166 18472355 -125810134 - THE1B LTR MaLR -177 187 1 9006 196 14 11 chr12 18472355 18474569 -125807920 + L1P5 LINE L1 3301 5514 -637 1303 214 86 12 chr12 18474564 18474901 -125807588 + L1MA10 LINE L1 5972 6333 -1 * 279 100 0 0 chr12 18474962 18475002 -125807487 - MADE1 DNA Mariner -40 40 1 200 182 0 0 chr12 18475430 18475463 -125807026 + (TG)n Simple_repeat Simple_repeat 2 34 0 486 404 56 23 chr12 18475648 18476079 -125806410 - L2 LINE L2 -1 3271 2827 185 330 67 57 chr12 18476265 18476474 -125806015 - L2 LINE L2 -774 2540 2330 230 159 0 0 chr12 18477525 18477569 -125804920 + (TA)n Simple_repeat Simple_repeat 1 44 0 219 139 0 0 chr12 18478538 18478574 -125803915 + (T)n Simple_repeat Simple_repeat 1 36 0 1186 260 65 68 chr12 18479010 18479702 -125802787 + Charlie7 DNA MER1_type 34 723 -1889 183 162 0 0 chr12 18479793 18479830 -125802659 + (TA)n Simple_repeat Simple_repeat 1 37 0 528 305 70 10 chr12 18480323 18480523 -125801966 - MIR SINE MIR 0 262 51 22 35 0 0 chr12 18481358 18481387 -125801102 + AT_rich Low_complexity Low_complexity 1 29 0 570 303 63 31 chr12 18482131 18482385 -125800104 + MIR SINE MIR 1 262 0 371 303 76 28 chr12 18482621 18482832 -125799657 - L2 LINE L2 0 3313 3009 985 248 106 20 chr12 18483000 18483303 -125799186 - MER2 DNA MER2_type -16 329 1 23 54 0 0 chr12 18483315 18483352 -125799137 + AT_rich Low_complexity Low_complexity 1 37 0 330 335 197 0 chr12 18483429 18483647 -125798842 - MIR SINE MIR 0 262 2 24 0 0 0 chr12 18483704 18483728 -125798761 + AT_rich Low_complexity Low_complexity 1 24 0 217 346 56 19 chr12 18484087 18484194 -125798295 - MIR SINE MIR 0 262 152 1893 53 0 0 chr12 18484269 18484497 -125797992 - AluY SINE Alu -8 303 76 432 0 0 0 chr12 18485762 18485810 -125796679 + (CA)n Simple_repeat Simple_repeat 1 48 0 267 194 65 0 chr12 18486424 18486517 -125795972 + (TA)n Simple_repeat Simple_repeat 2 100 0 228 35 0 0 chr12 18486525 18486554 -125795935 + (CA)n Simple_repeat Simple_repeat 2 30 0 180 111 0 0 chr12 18487204 18487231 -125795258 + (TG)n Simple_repeat Simple_repeat 2 28 0 1561 179 7 23 chr12 18487487 18487788 -125794701 + AluJb SINE Alu 17 312 0 332 344 53 8 chr12 18488329 18488460 -125794029 + MIR3 SINE MIR 21 157 -51 50 59 0 0 chr12 18488793 18488878 -125793611 + AT_rich Low_complexity Low_complexity 1 85 0 22 0 0 0 chr12 18489294 18489316 -125793173 + AT_rich Low_complexity Low_complexity 1 22 0 780 237 17 6 chr12 18489608 18489785 -125792704 - MER58A DNA MER1_type 0 224 46 23 54 0 0 chr12 18490148 18490185 -125792304 + AT_rich Low_complexity Low_complexity 1 37 0 846 259 89 25 chr12 18490853 18491177 -125791312 - L1ME2 LINE L1 -9 6155 5811 1188 294 86 51 chr12 18491183 18493323 -125789166 - L1MEc LINE L1 -4025 2371 141 2482 20 7 0 chr12 18493886 18494184 -125788305 + L1P LINE L1 2186 2485 -3661 2815 167 44 0 chr12 18494292 18494820 -125787669 - L1PBa LINE L1 -6312 551 1 981 303 79 19 chr12 18494829 18495566 -125786923 - L1M1 LINE L1 -3982 3583 2803 1061 270 45 16 chr12 18495594 18495976 -125786513 - L1M1 LINE L1 -4921 2568 2176 901 345 28 16 chr12 18495994 18496429 -125786060 - L1M1 LINE L1 -5697 1799 1360 376 322 56 14 chr12 18498896 18499039 -125783450 + MIR SINE MIR 54 202 -60 25 31 0 0 chr12 18500029 18500061 -125782428 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr12 18501317 18501347 -125781142 + AT_rich Low_complexity Low_complexity 1 30 0 1043 63 0 28 chr12 18501891 18502033 -125780456 + L1PA10 LINE L1 6031 6168 0 3871 116 9 7 chr12 18502336 18502906 -125779583 + MER39B LTR ERV1 4 574 -79 1371 86 19 10 chr12 18502933 18503142 -125779347 + L1MA6 LINE L1 6090 6300 0 460 363 103 32 chr12 18503386 18503859 -125778630 - L2 LINE L2 -2 3270 2744 2154 109 0 25 chr12 18503859 18504180 -125778309 + AluSq SINE Alu 1 313 0 460 363 103 32 chr12 18504180 18504298 -125778191 - L2 LINE L2 -528 2744 2636 404 302 38 33 chr12 18504728 18504893 -125777596 - MIR SINE MIR -67 141 3 186 339 24 57 chr12 18505554 18505678 -125776811 + MIR SINE MIR 1 120 -142 286 299 164 45 chr12 18505791 18505992 -125776497 + LTR67 LTR ERVL 108 332 -225 26 50 0 0 chr12 18506735 18506775 -125775714 + AT_rich Low_complexity Low_complexity 1 40 0 954 278 57 22 chr12 18506973 18507379 -125775110 + L1ME3A LINE L1 5532 5951 -219 22 0 0 0 chr12 18509718 18509740 -125772749 + AT_rich Low_complexity Low_complexity 1 22 0 2638 176 0 2 chr12 18509749 18510231 -125772258 - L1P LINE L1 -1542 4604 4124 4276 325 90 34 chr12 18510272 18512746 -125769743 + L2 LINE L2 28 2638 -676 256 326 7 0 chr12 18512775 18512919 -125769570 - L1M4 LINE L1 -805 5341 5197 183 232 73 37 chr12 18514869 18514951 -125767538 + MIR SINE MIR 132 216 -46 25 51 0 0 chr12 18515418 18515457 -125767032 + AT_rich Low_complexity Low_complexity 1 39 0 237 373 20 20 chr12 18515473 18515674 -125766815 + MIR SINE MIR 62 262 0 1429 208 64 22 chr12 18515793 18516133 -125766356 + MLT1A1 LTR MaLR 4 365 0 32 26 0 0 chr12 18516304 18516343 -125766146 + AT_rich Low_complexity Low_complexity 1 39 0 25 65 0 0 chr12 18516476 18516522 -125765967 + AT_rich Low_complexity Low_complexity 1 46 0 244 253 24 12 chr12 18517673 18517756 -125764733 + L1MDa LINE L1 1274 1357 -5183 637 277 30 24 chr12 18517811 18518147 -125764342 - L1M4c LINE L1 -3994 2390 2053 516 220 27 0 chr12 18518145 18518307 -125764182 + L1P LINE L1 4674 4846 -1300 * 276 172 0 0 chr12 18518320 18518378 -125764111 + (TA)n Simple_repeat Simple_repeat 2 59 0 301 196 0 0 chr12 18518378 18518434 -125764055 - L1MC4 LINE L1 -1339 6703 6648 279 0 0 0 chr12 18518434 18518465 -125764024 + (GA)n Simple_repeat Simple_repeat 2 32 0 1608 247 31 9 chr12 18518465 18518919 -125763570 + L1P LINE L1 4800 5263 -883 303 73 0 0 chr12 18519019 18519060 -125763429 + L1PA7 LINE L1 6101 6141 -13 921 220 155 25 chr12 18519677 18520000 -125762489 + MLT1A1 LTR MaLR 1 365 0 2034 162 29 6 chr12 18521211 18521551 -125760938 + MER7A DNA MER2_type 1 346 0 395 137 14 0 chr12 18522747 18522820 -125759669 + CT-rich Low_complexity Low_complexity 2 75 0 493 306 105 48 chr12 18523313 18523871 -125758618 + L2 LINE L2 2711 3303 -10 24 53 0 0 chr12 18525927 18525965 -125756524 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr12 18527006 18527034 -125755455 + AT_rich Low_complexity Low_complexity 1 28 0 203 217 17 0 chr12 18527066 18527126 -125755363 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 440 291 5 3 chr12 18527212 18527332 -125755157 - MIR SINE MIR -30 178 57 6814 33 1 1 chr12 18527477 18528301 -125754188 + L1PA4 LINE L1 5329 6152 -3 369 0 0 0 chr12 18531893 18531934 -125750555 + (TG)n Simple_repeat Simple_repeat 2 42 0 297 266 16 0 chr12 18533929 18533993 -125748496 + polypurine Low_complexity Low_complexity 3 67 0 23 54 0 0 chr12 18534095 18534132 -125748357 + AT_rich Low_complexity Low_complexity 1 37 0 850 131 7 29 chr12 18534486 18534623 -125747866 + AluSc SINE Alu 1 134 -175 1972 115 7 0 chr12 18534631 18534909 -125747580 + AluSx SINE Alu 1 280 -32 180 0 0 0 chr12 18534909 18534929 -125747560 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 679 284 91 23 chr12 18535352 18535717 -125746772 + L2 LINE L2 2771 3156 -157 1362 207 121 15 chr12 18536281 18536619 -125745870 + MLT1A2 LTR MaLR 1 374 0 2357 63 20 3 chr12 18536907 18537206 -125745283 + AluY SINE Alu 1 304 -7 23 0 0 0 chr12 18537365 18537388 -125745101 + AT_rich Low_complexity Low_complexity 1 23 0 188 324 62 74 chr12 18538889 18539065 -125743424 + L2 LINE L2 3098 3271 -1 241 274 0 48 chr12 18540059 18540121 -125742368 - L2 LINE L2 -10 3262 3204 884 143 136 0 chr12 18541211 18541348 -125741141 - MSTA LTR MaLR 0 428 272 6791 211 104 19 chr12 18541348 18542966 -125739523 - MER52A LTR ERV1 0 1755 1 1211 191 103 8 chr12 18542966 18543215 -125739274 - MSTA LTR MaLR -153 275 3 423 303 31 6 chr12 18543359 18543521 -125738968 + L3 LINE CR1 809 974 -603 2036 124 0 14 chr12 18544482 18544773 -125737716 - AluSc SINE Alu -17 292 6 1196 175 156 0 chr12 18546074 18546331 -125736158 + L1PA16 LINE L1 5868 6164 -2 30 0 0 0 chr12 18546341 18546371 -125736118 + AT_rich Low_complexity Low_complexity 1 30 0 276 100 0 0 chr12 18547764 18547804 -125734685 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 215 31 31 0 chr12 18548012 18548044 -125734445 + (TTG)n Simple_repeat Simple_repeat 1 33 0 3150 143 25 0 chr12 18549819 18550302 -125732187 - MER1A DNA MER1_type 0 529 35 224 30 30 0 chr12 18550354 18550387 -125732102 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1001 221 50 99 chr12 18550427 18550811 -125731678 - MLT1A1 LTR MaLR 0 365 1 2106 222 31 2 chr12 18550812 18551227 -125731262 - MLT1A1-int LTR MaLR -1 1734 1308 961 188 74 0 chr12 18551329 18551531 -125730958 - MLT1A1-int LTR MaLR -1516 219 3 1110 207 41 98 chr12 18551533 18551920 -125730569 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr12 18553568 18553589 -125728900 + AT_rich Low_complexity Low_complexity 1 21 0 535 357 21 26 chr12 18553832 18554255 -125728234 + L1ME2 LINE L1 8 428 -5968 1961 138 3 10 chr12 18554307 18554603 -125727886 + AluSg SINE Alu 1 294 -16 239 306 12 0 chr12 18554806 18554891 -125727598 + L1ME2 LINE L1 2459 2544 -3671 692 217 187 3 chr12 18554894 18555096 -125727393 - MSTA LTR MaLR -2 426 203 1158 60 0 20 chr12 18555103 18555254 -125727235 - AluY SINE Alu -163 148 1 577 222 87 0 chr12 18555270 18555396 -125727093 - MSTA LTR MaLR -208 167 31 1047 280 117 40 chr12 18555397 18555944 -125726545 + L1ME2 LINE L1 3029 3667 -2548 513 32 0 0 chr12 18555944 18556007 -125726482 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 1047 280 117 40 chr12 18556007 18556315 -125726174 + L1ME2 LINE L1 3667 3950 -2265 2983 262 65 22 chr12 18556315 18558278 -125724211 + L1ME2 LINE L1 4173 6224 -9 196 228 33 130 chr12 18558544 18558636 -125723853 + L3 LINE CR1 1449 1531 -46 744 204 0 26 chr12 18558871 18559023 -125723466 - MLT1E2 LTR MaLR 0 626 479 206 139 28 0 chr12 18561252 18561288 -125721201 + (CAT)n Simple_repeat Simple_repeat 3 39 0 1652 208 17 0 chr12 18612728 18613026 -125669463 - AluJb SINE Alu -9 303 1 23 33 0 0 chr12 18613029 18613059 -125669430 + AT_rich Low_complexity Low_complexity 1 30 0 214 325 38 0 chr12 18613432 18613512 -125668977 - L2 LINE L2 -8 3305 3223 * 517 288 63 14 chr12 18613506 18613728 -125668761 - L2 LINE L2 -733 2581 2349 3809 163 16 21 chr12 18613939 18614676 -125667813 + L1PB1 LINE L1 4461 5184 -967 405 0 0 0 chr12 18614676 18614721 -125667768 + (TAA)n Simple_repeat Simple_repeat 2 46 0 3809 163 16 21 chr12 18614721 18615326 -125667163 + L1PB1 LINE L1 5184 5791 -360 225 0 0 0 chr12 18615360 18615385 -125667104 + (TG)n Simple_repeat Simple_repeat 2 26 0 195 42 0 0 chr12 18615405 18615429 -125667060 + (CA)n Simple_repeat Simple_repeat 2 25 0 2418 107 22 8 chr12 18615429 18615784 -125666705 + L1PB1 LINE L1 5787 6149 -2 3042 148 21 14 chr12 18616013 18616574 -125665915 - L1MA4 LINE L1 0 6300 5736 264 386 64 29 chr12 18617031 18617202 -125665287 + MER5A DNA MER1_type 11 187 -2 1371 179 55 34 chr12 18617426 18617717 -125664772 - AluJb SINE Alu -9 303 7 884 73 0 0 chr12 18618519 18618629 -125663860 - AluY SINE Alu -10 301 192 224 154 19 0 chr12 18619544 18619596 -125662893 + (TA)n Simple_repeat Simple_repeat 2 54 0 558 227 5 60 chr12 18620443 18620628 -125661861 - LOR1-int LTR ERV1 -6647 1473 1299 21 0 0 0 chr12 18621419 18621440 -125661049 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 18622462 18622490 -125659999 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr12 18623275 18623298 -125659191 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 198 237 105 26 chr12 18624171 18624247 -125658242 + MIR SINE MIR 80 161 -101 318 291 102 0 chr12 18624625 18624752 -125657737 + MIR SINE MIR 67 206 -56 561 264 30 124 chr12 18624763 18625011 -125657478 + MER101B LTR ERV1 1 212 -358 1542 156 201 6 chr12 18625011 18625369 -125657120 - MSTA LTR MaLR 0 428 1 561 264 30 124 chr12 18625369 18625450 -125657039 + MER101B LTR ERV1 212 299 -271 427 378 65 13 chr12 18629288 18629518 -125652971 - MIR SINE MIR 0 262 21 544 337 127 23 chr12 18629546 18629932 -125652557 - L3 LINE CR1 -104 1473 1048 1282 162 8 17 chr12 18631041 18631275 -125651214 + AluJb SINE Alu 70 301 -11 1332 160 0 9 chr12 18631483 18631702 -125650787 + AluJb SINE Alu 82 298 -14 25 0 0 0 chr12 18631752 18631777 -125650712 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr12 18632984 18633007 -125649482 + AT_rich Low_complexity Low_complexity 1 23 0 269 293 38 38 chr12 18636023 18636129 -125646360 + L2 LINE L2 3190 3295 -18 371 344 185 32 chr12 18637395 18638122 -125644367 - L2 LINE L2 0 3313 2483 427 333 79 50 chr12 18638839 18639181 -125643308 - MLT1K LTR MaLR -234 354 3 33 25 0 0 chr12 18639221 18639261 -125643228 + AT_rich Low_complexity Low_complexity 1 40 0 1820 90 9 100 chr12 18639261 18639582 -125642907 - AluSq SINE Alu -21 292 1 23 54 0 0 chr12 18639858 18639895 -125642594 + AT_rich Low_complexity Low_complexity 1 37 0 408 286 23 64 chr12 18639895 18640161 -125642328 + L1M4 LINE L1 2232 2486 -3660 22 35 0 0 chr12 18640325 18640354 -125642135 + AT_rich Low_complexity Low_complexity 1 29 0 40 37 0 0 chr12 18640463 18640517 -125641972 + AT_rich Low_complexity Low_complexity 1 54 0 322 235 17 92 chr12 18640545 18640664 -125641825 + L1MB5 LINE L1 3 112 -6430 3361 257 41 46 chr12 18640783 18641051 -125641438 + L1MB5 LINE L1 350 618 -5924 1796 142 26 3 chr12 18641051 18641354 -125641135 + AluSg SINE Alu 1 310 0 3361 257 41 46 chr12 18641354 18642386 -125640103 + L1MB5 LINE L1 618 1643 -4899 897 229 80 0 chr12 18642401 18642650 -125639839 + L1MB5 LINE L1 1509 1777 -4869 2072 158 36 46 chr12 18642784 18643338 -125639151 + MLT2A2 LTR ERVL 1 554 0 262 286 0 44 chr12 18643351 18643442 -125639047 + L1MB2 LINE L1 582 668 -5907 3038 174 25 9 chr12 18643515 18644151 -125638338 + L1MB2 LINE L1 1985 2630 -4016 1685 188 22 8 chr12 18644157 18644525 -125637964 + L1MB3 LINE L1 5807 6179 -4 3324 194 28 35 chr12 18644531 18645361 -125637128 + L1MB2 LINE L1 4449 5272 -1372 3853 210 40 35 chr12 18645365 18646612 -125635877 + L1MB2 LINE L1 5425 6668 -1 955 257 34 34 chr12 18646610 18646937 -125635552 + L1MB5 LINE L1 1767 2093 -4553 * 1039 253 108 35 chr12 18647036 18647845 -125634644 + L1MB5 LINE L1 2363 3227 -3417 2044 222 10 32 chr12 18647873 18648073 -125634416 + L1MB5 LINE L1 5977 6180 -492 2378 230 18 6 chr12 18648073 18648582 -125633907 - MLT2B2 LTR ERVL 0 515 1 2044 222 10 32 chr12 18648582 18648880 -125633609 + L1MB5 LINE L1 6180 6464 -208 463 250 110 0 chr12 18648883 18649019 -125633470 + L1MB5 LINE L1 6513 6663 -9 23 33 0 0 chr12 18649052 18649082 -125633407 + AT_rich Low_complexity Low_complexity 1 30 0 240 167 0 0 chr12 18650158 18650206 -125632283 + Alu SINE Alu 259 306 -2 266 365 62 15 chr12 18651275 18651615 -125630874 - L1MC/D LINE L1 -1911 5897 5542 690 268 61 45 chr12 18651691 18651937 -125630552 + MIR SINE MIR 13 262 0 307 358 72 46 chr12 18652038 18652640 -125629849 - L2 LINE L2 -183 3089 2467 1923 139 13 0 chr12 18652675 18652977 -125629512 + AluSx SINE Alu 1 306 -6 225 0 0 0 chr12 18653142 18653167 -125629322 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1933 117 45 3 chr12 18653368 18653658 -125628831 + AluSx SINE Alu 2 303 -9 439 349 20 21 chr12 18653731 18653935 -125628554 - MIR SINE MIR -30 232 30 247 247 26 26 chr12 18655781 18655858 -125626631 - MIR SINE MIR 0 262 186 350 330 122 5 chr12 18656129 18656326 -125626163 - MIR SINE MIR -9 253 34 213 154 0 0 chr12 18656609 18656648 -125625841 + (CATA)n Simple_repeat Simple_repeat 2 40 0 348 64 0 0 chr12 18656656 18656703 -125625786 + (TG)n Simple_repeat Simple_repeat 2 48 0 33 43 0 0 chr12 18657352 18657399 -125625090 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr12 18657454 18657476 -125625013 + AT_rich Low_complexity Low_complexity 1 22 0 23 78 0 0 chr12 18657658 18657709 -125624780 + AT_rich Low_complexity Low_complexity 1 51 0 214 118 66 26 chr12 18658409 18658485 -125624004 + (TTATA)n Simple_repeat Simple_repeat 1 79 0 28 48 0 0 chr12 18658492 18658534 -125623955 + AT_rich Low_complexity Low_complexity 1 42 0 212 339 79 22 chr12 18658735 18658924 -125623565 - MIR3 SINE MIR -7 201 3 301 281 78 39 chr12 18660370 18660498 -125621991 - MIR SINE MIR -39 223 91 * 821 238 26 22 chr12 18660496 18660727 -125621762 - MIR SINE MIR 0 262 31 186 346 50 40 chr12 18661333 18661434 -125621055 + L2 LINE L2 2987 3088 -184 33 43 0 0 chr12 18661651 18661698 -125620791 + AT_rich Low_complexity Low_complexity 1 47 0 870 171 94 0 chr12 18662503 18662684 -125619805 + L1PBa LINE L1 3 200 -6663 12012 171 70 7 chr12 18662684 18666878 -125615611 + L1PBa LINE L1 634 5089 -1773 549 267 5 37 chr12 18667252 18667439 -125615050 + LOR1-int LTR ERV1 1293 1473 -6647 2606 323 108 35 chr12 18667995 18669744 -125612745 + L2 LINE L2 1084 3015 -298 2106 241 39 49 chr12 18669744 18670437 -125612052 + MER76 LTR ERV 1 686 -2 2606 323 108 35 chr12 18670437 18670752 -125611737 + L2 LINE L2 3015 3305 -8 203 346 115 0 chr12 18671639 18671717 -125610772 - L2 LINE L2 -2 3270 3184 1738 212 26 0 chr12 18672138 18672482 -125610007 + MLT1A1 LTR MaLR 4 356 -9 1184 327 168 19 chr12 18672615 18673389 -125609100 - L2 LINE L2 -498 2816 1928 23 0 0 0 chr12 18673595 18673618 -125608871 + AT_rich Low_complexity Low_complexity 1 23 0 632 77 11 0 chr12 18674021 18674112 -125608377 + (TTCC)n Simple_repeat Simple_repeat 4 95 0 23 33 0 0 chr12 18675540 18675570 -125606919 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 18675690 18675711 -125606778 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr12 18675749 18675782 -125606707 + AT_rich Low_complexity Low_complexity 1 33 0 285 169 0 0 chr12 18675958 18676017 -125606472 + (TA)n Simple_repeat Simple_repeat 2 60 0 210 37 0 0 chr12 18676428 18676455 -125606034 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2050 76 14 10 chr12 18676461 18676752 -125605737 - AluY SINE Alu -19 292 1 27 73 0 0 chr12 18676760 18676815 -125605674 + AT_rich Low_complexity Low_complexity 1 55 0 660 306 86 5 chr12 18677504 18677726 -125604763 - MIR SINE MIR -8 254 15 252 274 128 43 chr12 18678019 18678136 -125604353 - L2 LINE L2 0 3313 3187 569 105 0 12 chr12 18679325 18679411 -125603078 - AluSc SINE Alu -12 297 213 2583 20 7 0 chr12 18681265 18681567 -125600922 + AluY SINE Alu 1 304 -7 212 333 126 16 chr12 18682002 18682185 -125600304 - MIR SINE MIR -12 250 48 246 335 76 25 chr12 18683793 18683951 -125598538 + HAL1 LINE L1 384 549 -1958 1220 194 96 97 chr12 18684041 18684454 -125598035 + MSTD LTR MaLR 1 396 0 300 262 183 0 chr12 18684457 18684583 -125597906 + HAL1 LINE L1 1499 1647 -860 404 307 111 48 chr12 18684743 18685202 -125597287 + HAL1 LINE L1 1911 2398 -109 1220 281 111 28 chr12 18687693 18688905 -125593584 - L1MEc LINE L1 -2272 3943 2631 215 214 67 0 chr12 18689092 18689181 -125593308 + (TA)n Simple_repeat Simple_repeat 2 96 0 3821 28 15 0 chr12 18689320 18689783 -125592706 - L1PA4 LINE L1 -1 6154 5685 353 338 114 32 chr12 18689996 18690460 -125592029 - L1MEc LINE L1 -5039 1357 856 191 285 98 24 chr12 18690552 18690675 -125591814 + L2 LINE L2 2374 2505 -809 428 364 36 38 chr12 18691522 18691887 -125590602 + L2 LINE L2 2950 3313 0 237 73 91 0 chr12 18692056 18692111 -125590378 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 906 143 0 0 chr12 18692127 18692267 -125590222 + AluSp/q SINE Alu 161 300 -13 186 403 106 36 chr12 18692283 18692782 -125589707 - L2 LINE L2 -560 2754 2221 2093 185 82 13 chr12 18693173 18693604 -125588885 + MLT1C LTR MaLR 9 390 0 1928 176 84 0 chr12 18693848 18694241 -125588248 + MSTB LTR MaLR 1 426 0 182 299 45 15 chr12 18696247 18696314 -125586175 - L3 LINE CR1 -1319 258 190 427 260 44 61 chr12 18696495 18696676 -125585813 + MLT1K LTR MaLR 411 588 0 2441 116 6 6 chr12 18696976 18697339 -125585150 - THE1B LTR MaLR -1 363 1 469 314 82 79 chr12 18697647 18697988 -125584501 - L2 LINE L2 -4 3268 2927 3008 156 31 2 chr12 18697989 18698501 -125583988 + MER1A DNA MER1_type 1 527 0 3119 153 32 44 chr12 18698804 18699288 -125583201 + L1MC1 LINE L1 5655 6130 -203 2111 117 0 3 chr12 18699288 18699587 -125582902 + AluSx SINE Alu 1 298 -14 3119 153 32 44 chr12 18699587 18699788 -125582701 + L1MC1 LINE L1 6130 6332 -1 458 342 16 0 chr12 18700759 18700943 -125581546 - L2 LINE L2 -1287 2027 1841 * 1097 308 163 6 chr12 18700938 18701435 -125581054 + L2 LINE L2 1962 2536 -778 995 329 28 46 chr12 18701464 18701757 -125580732 + L2 LINE L2 2824 3106 -207 2291 107 3 0 chr12 18701757 18702067 -125580422 - AluSp SINE Alu 0 313 3 995 329 28 46 chr12 18702067 18702272 -125580217 + L2 LINE L2 3106 3313 0 21 57 0 0 chr12 18703543 18703578 -125578911 + AT_rich Low_complexity Low_complexity 1 35 0 525 175 21 10 chr12 18704436 18704533 -125577956 + MER4A LTR ERV1 1 98 -566 1637 148 161 75 chr12 18704533 18704905 -125577584 + MER4A LTR ERV1 261 664 0 33 25 0 0 chr12 18704945 18704985 -125577504 + AT_rich Low_complexity Low_complexity 1 40 0 1541 293 37 38 chr12 18704997 18705923 -125576566 + L1MD1 LINE L1 37 1127 -5413 398 172 0 0 chr12 18705927 18706018 -125576471 + AluS SINE Alu 221 311 0 2295 132 28 8 chr12 18706072 18706429 -125576060 + THE1B LTR MaLR 1 364 0 10253 95 8 86 chr12 18706429 18708135 -125574354 + THE1B-int LTR MaLR 1 1573 -7 2162 149 31 8 chr12 18708141 18708497 -125573992 + THE1B LTR MaLR 1 364 0 3818 255 34 22 chr12 18708497 18709859 -125572630 + L1MD1 LINE L1 4185 5562 -978 2228 176 41 10 chr12 18709853 18710360 -125572129 - L1MA8 LINE L1 -1479 4667 4145 * 1508 189 55 3 chr12 18710358 18710723 -125571766 + L1MA8 LINE L1 4665 5048 -1098 * 4335 171 17 18 chr12 18710723 18711602 -125570887 + L1MA8 LINE L1 5409 6286 -5 837 256 30 0 chr12 18711623 18711935 -125570554 + L1MD1 LINE L1 5567 5887 -743 936 272 101 17 chr12 18711935 18712343 -125570146 - LTR47B LTR ERVL 0 443 2 306 244 0 49 chr12 18712345 18712427 -125570062 - MER4B-int LTR ERV1 -683 6075 5998 541 361 46 41 chr12 18713173 18714159 -125568330 - LTR57-int LTR ERVL -1243 4100 3130 641 319 19 5 chr12 18714345 18714555 -125567934 - LTR57-int LTR ERVL -3278 2065 1853 3331 193 28 28 chr12 18714589 18715335 -125567154 + L1MD1 LINE L1 5890 6635 -1 384 119 0 0 chr12 18715402 18715461 -125567028 + (TA)n Simple_repeat Simple_repeat 2 60 0 285 28 0 0 chr12 18715461 18715491 -125566998 + (CA)n Simple_repeat Simple_repeat 1 30 0 438 20 0 0 chr12 18716388 18716439 -125566050 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chr12 18717163 18717191 -125565298 + AT_rich Low_complexity Low_complexity 1 28 0 1703 197 34 8 chr12 18717530 18717885 -125564604 - MLT1A1 LTR MaLR 0 365 2 1842 212 59 162 chr12 18718204 18719428 -125563061 + MER52A LTR ERV1 656 1753 -2 2926 176 49 3 chr12 18719663 18720258 -125562231 - L1MA6 LINE L1 0 6300 5679 683 329 32 22 chr12 18720974 18721287 -125561202 + ERVL LTR ERVL 2546 2861 -2903 405 318 8 24 chr12 18721526 18721652 -125560837 + ERVL LTR ERVL 580 703 -5061 2051 230 89 71 chr12 18721802 18722746 -125559743 - L1MC3 LINE L1 -12 7773 6813 * 2759 259 61 17 chr12 18722745 18723890 -125558599 - L1M4 LINE L1 -2103 4043 2848 839 176 21 16 chr12 18723887 18724075 -125558414 + L1MA4 LINE L1 6098 6286 -14 * 28 0 0 0 chr12 18724095 18724123 -125558366 + AT_rich Low_complexity Low_complexity 1 28 0 1956 127 7 0 chr12 18724135 18724411 -125558078 - AluSq SINE Alu -31 282 5 1004 251 22 38 chr12 18724414 18724784 -125557705 - L1M4 LINE L1 -3319 2827 2464 23 33 0 0 chr12 18724845 18724875 -125557614 + AT_rich Low_complexity Low_complexity 1 30 0 4909 254 84 41 chr12 18724902 18727600 -125554889 - L1MCa LINE L1 -1229 5335 2314 2263 71 3 0 chr12 18727600 18727921 -125554568 - AluY SINE Alu 0 323 2 4909 254 84 41 chr12 18727921 18729763 -125552726 - L1MCa LINE L1 -4250 2314 553 1380 291 35 33 chr12 18729825 18730375 -125552114 - L1MCa LINE L1 -5491 554 4 595 277 13 0 chr12 18730375 18730530 -125551959 - MER58B DNA MER1_type -18 323 167 1193 306 64 8 chr12 18730586 18731056 -125551433 + ERVL LTR ERVL 909 1404 -4360 369 251 25 23 chr12 18731052 18731276 -125551213 + ERVL LTR ERVL 1799 2085 -3679 * 1669 154 17 17 chr12 18731277 18731576 -125550913 - AluJb SINE Alu -13 299 1 25 0 0 0 chr12 18732024 18732049 -125550440 + AT_rich Low_complexity Low_complexity 1 25 0 262 91 11 5 chr12 18733556 18733603 -125548886 - Alu SINE Alu -271 37 3 2292 59 0 7 chr12 18733603 18733893 -125548596 + AluYb8 SINE Alu 31 318 0 940 161 7 0 chr12 18733901 18734050 -125548439 + AluSg/x SINE Alu 152 301 -11 25 31 0 0 chr12 18734072 18734104 -125548385 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr12 18734320 18734348 -125548141 + AT_rich Low_complexity Low_complexity 1 28 0 584 126 11 21 chr12 18734858 18734953 -125547536 + FLAM SINE Alu 39 132 -11 1724 285 96 36 chr12 18734953 18736298 -125546191 - L1ME3A LINE L1 -7 6163 4738 683 173 33 61 chr12 18736321 18736511 -125545978 - L1MA7 LINE L1 -51 6240 6046 1923 175 0 0 chr12 18736511 18736819 -125545670 + AluSx SINE Alu 2 309 -3 683 173 33 61 chr12 18736819 18737348 -125545141 - L1MA7 LINE L1 -245 6046 5412 2573 192 23 0 chr12 18737352 18737879 -125544610 - L1MA7 LINE L1 -1821 4325 3787 1944 199 38 59 chr12 18737870 18738056 -125544433 + L1MB1 LINE L1 4862 5050 -1118 * 1952 128 68 11 chr12 18738056 18738409 -125544080 - THE1C LTR MaLR 0 375 3 1944 199 38 59 chr12 18738409 18739139 -125543350 + L1MB1 LINE L1 5050 5777 -391 324 213 61 6 chr12 18739139 18739303 -125543186 + (TA)n Simple_repeat Simple_repeat 1 173 0 189 107 33 74 chr12 18739307 18739429 -125543060 + (TATAA)n Simple_repeat Simple_repeat 1 117 0 256 168 84 0 chr12 18739446 18739541 -125542948 + (TA)n Simple_repeat Simple_repeat 2 104 0 1898 155 11 33 chr12 18739611 18739923 -125542566 + L1MB1 LINE L1 5815 6119 -49 1768 164 3 20 chr12 18739923 18740221 -125542268 + AluSx SINE Alu 1 293 -19 1898 155 11 33 chr12 18740221 18740270 -125542219 + L1MB1 LINE L1 6119 6168 0 794 224 66 76 chr12 18740311 18740615 -125541874 + LTR52 LTR ERVL 23 323 -98 2191 163 33 37 chr12 18740618 18741016 -125541473 - MSTA LTR MaLR 0 428 31 1895 85 111 4 chr12 18741016 18741287 -125541202 + AluYa8 SINE Alu 1 300 -10 2191 163 33 37 chr12 18741287 18741317 -125541172 - MSTA LTR MaLR -397 31 2 3180 164 5 55 chr12 18741318 18741940 -125540549 - MSTA-int LTR MaLR 0 1651 1061 362 194 14 0 chr12 18741940 18742012 -125540477 - MSTA LTR MaLR -355 73 1 587 261 130 15 chr12 18742188 18742587 -125539902 - L1MDa LINE L1 -2528 4012 3568 371 225 55 39 chr12 18742562 18742744 -125539745 - L1MDa LINE L1 -3926 2614 2445 * 1705 185 65 3 chr12 18742761 18743144 -125539345 - L1MC1 LINE L1 -1 6332 5926 1261 224 86 65 chr12 18743141 18743502 -125538987 - L1MCa LINE L1 -2736 3690 3309 * 2021 127 13 3 chr12 18743502 18743801 -125538688 + AluSx SINE Alu 2 303 -9 1261 224 86 65 chr12 18743801 18744042 -125538447 - L1MCa LINE L1 -3117 3309 3075 2315 122 32 0 chr12 18744058 18744402 -125538087 + THE1A LTR MaLR 1 355 0 8836 116 138 1 chr12 18744402 18745321 -125537168 + THE1A-int LTR MaLR 1 1176 -404 210 37 0 0 chr12 18745321 18745348 -125537141 + (GGGTG)n Simple_repeat Simple_repeat 3 29 0 8836 116 138 1 chr12 18745348 18745818 -125536671 + THE1A-int LTR MaLR 1176 1580 0 2705 85 6 0 chr12 18745818 18746171 -125536318 + THE1A LTR MaLR 1 355 0 811 208 6 0 chr12 18746181 18746340 -125536149 - FRAM SINE Alu -9 167 8 1531 247 66 18 chr12 18746360 18747035 -125535454 - L1MCa LINE L1 -3380 3046 2339 483 282 66 28 chr12 18747525 18747706 -125534783 - LTR33 LTR ERVL -326 195 8 667 351 22 36 chr12 18747926 18748178 -125534311 - HERVL LTR ERVL -311 5343 5100 2002 109 21 0 chr12 18748178 18748462 -125534027 + AluY SINE Alu 1 290 -21 667 351 22 36 chr12 18748462 18748707 -125533782 - HERVL LTR ERVL -554 5100 4853 21 0 0 0 chr12 18749852 18749873 -125532616 + AT_rich Low_complexity Low_complexity 1 21 0 3736 16 0 2 chr12 18751103 18751562 -125530927 + L1PA2 LINE L1 5711 6168 0 463 297 36 42 chr12 18751592 18751784 -125530705 + MIR SINE MIR 35 225 -37 26 30 0 0 chr12 18753498 18753531 -125528958 + AT_rich Low_complexity Low_complexity 1 33 0 1197 235 131 75 chr12 18754114 18755018 -125527471 - LTR1B LTR ERV1 0 1020 1 277 298 111 29 chr12 18757101 18757272 -125525217 - MIR SINE MIR -14 248 64 275 315 23 2 chr12 18757278 18757377 -125525112 + MIR SINE MIR 41 140 -68 255 180 11 45 chr12 18757553 18757642 -125524847 + CT-rich Low_complexity Low_complexity 2 87 0 21 36 0 0 chr12 18757966 18757994 -125524495 + AT_rich Low_complexity Low_complexity 1 28 0 357 325 35 0 chr12 18758124 18758238 -125524251 - L2 LINE L2 -4 3309 3192 2688 266 37 41 chr12 18759589 18761068 -125521421 - L1MD2 LINE L1 -232 6127 4661 191 340 109 39 chr12 18761703 18762015 -125520474 + L2 LINE L2 2256 2589 -725 188 292 14 28 chr12 18763334 18763406 -125519083 - L2 LINE L2 -314 2958 2888 413 0 39 0 chr12 18764253 18764305 -125518184 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 25 51 0 0 chr12 18765518 18765557 -125516932 + AT_rich Low_complexity Low_complexity 1 39 0 1182 260 24 68 chr12 18766041 18766453 -125516036 + MSTD LTR MaLR 1 394 -2 2196 61 44 10 chr12 18766690 18766984 -125515505 + AluY SINE Alu 1 304 -7 3465 274 80 32 chr12 18767100 18769595 -125512894 + L1M4 LINE L1 23 2813 -3831 1736 199 11 20 chr12 18769783 18770134 -125512355 + MLT1A1 LTR MaLR 5 352 -13 617 371 63 43 chr12 18770147 18770746 -125511743 - L2 LINE L2 -2518 796 186 1330 244 37 26 chr12 18770811 18771159 -125511330 - MLT1B LTR MaLR -29 361 10 280 119 34 0 chr12 18771228 18771287 -125511202 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 25 0 0 0 chr12 18771788 18771813 -125510676 + AT_rich Low_complexity Low_complexity 1 25 0 479 163 111 15 chr12 18772039 18772174 -125510315 - L1MA8 LINE L1 -4 6287 6140 1881 165 96 21 chr12 18772174 18772593 -125509896 + LTR7 LTR ERV1 1 450 0 8260 142 55 37 chr12 18772593 18774488 -125508001 + HERVH LTR ERV1 1 2259 -5454 2107 85 75 83 chr12 18774491 18774892 -125507597 + LTR14B LTR ERVK 1 608 0 8067 217 16 17 chr12 18774892 18776944 -125505545 + HERVH LTR ERV1 2255 4245 -3468 10666 30 4 7 chr12 18776956 18778303 -125504186 - L1P LINE L1 -1614 4532 3189 3865 14 0 0 chr12 18778303 18778742 -125503747 + L1PA2 LINE L1 5712 6155 0 2990 208 27 21 chr12 18778834 18778919 -125503570 + HERVH LTR ERV1 4314 4397 -3316 2418 72 0 3 chr12 18778919 18779225 -125503264 - AluY SINE Alu -6 305 1 2990 208 27 21 chr12 18779225 18779842 -125502647 + HERVH LTR ERV1 4397 5020 -2693 * 3315 115 6 10 chr12 18779827 18780350 -125502139 + HERVH LTR ERV1 7193 7713 0 1802 167 96 21 chr12 18780350 18780769 -125501720 + LTR7 LTR ERV1 1 450 0 342 161 74 0 chr12 18780770 18780851 -125501638 - L1MA8 LINE L1 -148 6143 6057 * 6356 166 35 30 chr12 18780849 18780917 -125501572 + L1P3 LINE L1 1 67 -6171 2268 64 0 14 chr12 18780917 18781213 -125501276 + AluY SINE Alu 19 310 -1 6356 166 35 30 chr12 18781213 18782602 -125499887 + L1P3 LINE L1 67 1504 -4734 3973 173 32 13 chr12 18782598 18783781 -125498708 - L1MA8 LINE L1 -219 6072 4874 * 11871 199 35 14 chr12 18783831 18787615 -125494874 + L1MA5 LINE L1 2419 6295 -5 230 233 20 7 chr12 18788715 18788865 -125493624 + (TA)n Simple_repeat Simple_repeat 2 153 0 31 0 0 0 chr12 18790162 18790193 -125492296 + AT_rich Low_complexity Low_complexity 1 31 0 222 287 184 11 chr12 18790489 18790576 -125491913 + L3b LINE CR1 1335 1436 -147 25 0 0 0 chr12 18790742 18790767 -125491722 + AT_rich Low_complexity Low_complexity 1 25 0 534 271 87 96 chr12 18791515 18792289 -125490200 - LTR41 LTR ERVL -6 767 1 471 347 86 0 chr12 18792464 18792686 -125489803 + MIR SINE MIR 7 247 -15 23 0 0 0 chr12 18793327 18793350 -125489139 + AT_rich Low_complexity Low_complexity 1 23 0 1057 266 68 32 chr12 18793628 18794038 -125488451 + MLT1C LTR MaLR 42 466 -1 474 305 120 6 chr12 18794074 18794241 -125488248 + MIR SINE MIR 19 204 -58 26 0 0 0 chr12 18794264 18794290 -125488199 + AT_rich Low_complexity Low_complexity 1 26 0 1142 272 155 30 chr12 18794377 18795505 -125486984 - L1ME3A LINE L1 -6 6164 4890 1783 178 7 0 chr12 18795698 18796002 -125486487 - AluJo SINE Alu -6 306 1 193 269 19 0 chr12 18796214 18796266 -125486223 + L2 LINE L2 3261 3313 0 2068 117 0 0 chr12 18796564 18796847 -125485642 + AluSx SINE Alu 1 283 -29 198 0 0 0 chr12 18796854 18796876 -125485613 + (CATA)n Simple_repeat Simple_repeat 3 24 0 267 79 0 0 chr12 18797101 18797139 -125485350 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr12 18798005 18798026 -125484463 + AT_rich Low_complexity Low_complexity 1 21 0 583 286 78 10 chr12 18798026 18798218 -125484271 - MIR SINE MIR -26 236 32 284 295 48 19 chr12 18798627 18798732 -125483757 - L2 LINE L2 -15 3298 3191 293 394 64 42 chr12 18798918 18799213 -125483276 + L2 LINE L2 2364 2651 -663 1653 194 0 16 chr12 18799213 18799517 -125482972 - AluJo SINE Alu -13 299 1 293 394 64 42 chr12 18799517 18799815 -125482674 + L2 LINE L2 2651 2970 -344 1880 211 60 16 chr12 18800253 18800737 -125481752 + MLT1D LTR MaLR 1 505 0 343 265 142 37 chr12 18800964 18801126 -125481363 - MER5A DNA MER1_type -2 187 9 360 239 138 73 chr12 18801455 18801744 -125480745 + L1ME3A LINE L1 5863 6170 0 1166 211 81 36 chr12 18802845 18803153 -125479336 + MER2 DNA MER2_type 1 322 -23 190 308 111 26 chr12 18803540 18803657 -125478832 - MIR SINE MIR -75 187 61 21 0 0 0 chr12 18803727 18803748 -125478741 + AT_rich Low_complexity Low_complexity 1 21 0 264 30 0 0 chr12 18805196 18805229 -125477260 + (CA)n Simple_repeat Simple_repeat 2 34 0 25 31 0 0 chr12 18805509 18805541 -125476948 + AT_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr12 18807125 18807174 -125475315 + AT_rich Low_complexity Low_complexity 1 49 0 23 0 0 0 chr12 18808420 18808443 -125474046 + AT_rich Low_complexity Low_complexity 1 23 0 294 148 0 0 chr12 18809465 18809519 -125472970 + (TG)n Simple_repeat Simple_repeat 2 55 0 1286 272 24 62 chr12 18809749 18810168 -125472321 + MER70B LTR ERVL 14 416 -162 22 35 0 0 chr12 18810885 18810914 -125471575 + AT_rich Low_complexity Low_complexity 1 29 0 196 204 0 45 chr12 18810968 18811012 -125471477 - MIR SINE MIR -24 238 197 463 372 53 13 chr12 18811452 18811756 -125470733 - L2 LINE L2 -461 2853 2538 211 124 66 25 chr12 18812118 18812239 -125470250 + (TA)n Simple_repeat Simple_repeat 2 127 0 24 53 0 0 chr12 18812337 18812375 -125470114 + AT_rich Low_complexity Low_complexity 1 38 0 517 283 151 5 chr12 18812484 18812689 -125469800 - MIR SINE MIR 0 262 28 197 156 0 0 chr12 18812711 18812743 -125469746 + L2 LINE L2 3265 3296 -17 243 61 0 0 chr12 18814475 18814508 -125467981 + (TG)n Simple_repeat Simple_repeat 2 34 0 2109 80 0 4 chr12 18814987 18815261 -125467228 - AluY SINE Alu -5 306 34 659 278 17 0 chr12 18815459 18815639 -125466850 + L1MD3 LINE L1 7097 7279 -716 433 211 33 0 chr12 18815642 18815732 -125466757 + MLT1F1 LTR MaLR 5 97 -470 1933 238 51 30 chr12 18815752 18816324 -125466165 + L1MD3 LINE L1 7397 7980 -15 1827 152 7 3 chr12 18816394 18816706 -125465783 + AluSq SINE Alu 1 313 0 1479 195 0 10 chr12 18816846 18817138 -125465351 + L1PA16 LINE L1 5867 6155 -11 318 336 8 16 chr12 18817349 18817477 -125465012 + MIR SINE MIR 24 150 -112 442 360 68 48 chr12 18817513 18818269 -125464220 + L2 LINE L2 2535 3305 -8 1919 248 95 15 chr12 18818466 18819067 -125463422 + MER82 DNA MER2_type 1 649 -4 316 239 11 65 chr12 18819090 18819182 -125463307 - MER8 DNA MER2_type -152 87 1 21 0 0 0 chr12 18819987 18820008 -125462481 + AT_rich Low_complexity Low_complexity 1 21 0 210 193 0 0 chr12 18820684 18820741 -125461748 + (TA)n Simple_repeat Simple_repeat 1 57 0 23 68 0 0 chr12 18821677 18821721 -125460768 + AT_rich Low_complexity Low_complexity 1 44 0 253 122 0 0 chr12 18822427 18822468 -125460021 + L2 LINE L2 3272 3312 -1 24 32 0 0 chr12 18824975 18825006 -125457483 + AT_rich Low_complexity Low_complexity 1 31 0 2159 110 52 25 chr12 18826098 18826463 -125456026 + THE1C LTR MaLR 1 375 0 396 288 32 0 chr12 18826672 18826797 -125455692 + MIR SINE MIR 12 140 -122 210 189 14 27 chr12 18826839 18826913 -125455576 + (TA)n Simple_repeat Simple_repeat 2 74 0 185 179 0 0 chr12 18826941 18826969 -125455520 + MIR SINE MIR 209 236 -26 187 354 15 0 chr12 18828599 18828664 -125453825 - L2 LINE L2 -14 3258 3193 2003 190 38 14 chr12 18828878 18829300 -125453189 + MSTB1 LTR MaLR 1 432 0 6650 220 70 12 chr12 18829300 18830855 -125451634 + MSTB1-int LTR MaLR 6 1651 0 2237 173 20 43 chr12 18830858 18831297 -125451192 + MSTB1 LTR MaLR 4 432 0 201 356 35 0 chr12 18831321 18831436 -125451053 - MIR SINE MIR -131 131 13 256 386 102 14 chr12 18831688 18831983 -125450506 - L2 LINE L2 -445 2869 2549 719 345 62 17 chr12 18832315 18832816 -125449673 - HERV16 LTR ERVL -2918 2078 1688 329 158 12 0 chr12 18832850 18832932 -125449557 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 3679 207 65 12 chr12 18833054 18834186 -125448303 - L1M2 LINE L1 -743 5403 4262 2156 106 7 0 chr12 18834208 18834501 -125447988 - AluSg SINE Alu -14 296 2 8178 165 47 13 chr12 18834525 18836022 -125446467 + Tigger1 DNA MER2_type 3 1551 -867 3892 170 21 11 chr12 18836023 18836780 -125445709 - L1MA4A LINE L1 -236 7486 6722 8465 202 41 9 chr12 18836901 18838476 -125444013 - L1MA4A LINE L1 -844 6721 5198 354 23 0 0 chr12 18838476 18838519 -125443970 + (TC)n Simple_repeat Simple_repeat 2 44 0 * 369 43 0 0 chr12 18838518 18838565 -125443924 + (TG)n Simple_repeat Simple_repeat 2 48 0 8465 202 41 9 chr12 18838519 18839017 -125443472 - L1MA4A LINE L1 -2367 5198 4629 3128 152 29 16 chr12 18839033 18839580 -125442909 - MER41C LTR ERV1 0 554 1 3817 91 33 4 chr12 18839609 18840148 -125442341 - MER41C-int LTR ERV1 -3 7753 7199 * 9126 88 16 5 chr12 18840139 18841370 -125441119 - MER41C-int LTR ERV1 -1361 6395 5151 1251 131 5 5 chr12 18841363 18841561 -125440928 - MER41C-int LTR ERV1 -3315 4441 4244 * 17766 126 53 14 chr12 18841547 18843728 -125438761 - PRIMA41-int LTR ERV1 -4800 2956 637 402 39 0 0 chr12 18843728 18843780 -125438709 + (TG)n Simple_repeat Simple_repeat 2 53 0 17766 126 53 14 chr12 18843780 18844441 -125438048 - PRIMA41-int LTR ERV1 -7119 637 3 328 211 39 0 chr12 18844565 18844669 -125437820 + CT-rich Low_complexity Low_complexity 1 108 0 3009 264 44 17 chr12 18844673 18845637 -125436852 - L1PA15-16 LINE L1 -2977 4588 3569 2010 126 3 7 chr12 18845637 18845923 -125436566 - AluSx SINE Alu -27 285 1 3009 264 44 17 chr12 18845923 18846344 -125436145 - L1PA15-16 LINE L1 -3996 3569 3161 318 321 115 36 chr12 18846347 18846512 -125435977 - L1M2b LINE L1 -5822 1387 1210 2984 290 118 33 chr12 18846513 18848087 -125434402 - L1M2b LINE L1 -5501 1708 1 578 278 18 9 chr12 18848324 18848551 -125433938 - L1PA15-16 LINE L1 -4440 3125 2897 2047 266 35 31 chr12 18849014 18850221 -125432268 - L1M2 LINE L1 -4325 2843 1619 448 343 35 68 chr12 18850556 18850985 -125431504 - L1M2 LINE L1 -6739 429 15 1454 204 114 8 chr12 18850998 18851385 -125431104 - L1M2 LINE L1 -572 5740 5313 370 138 56 50 chr12 18851406 18851566 -125430923 + (TTATA)n Simple_repeat Simple_repeat 4 164 0 3406 225 29 14 chr12 18851570 18852458 -125430031 - L1M2 LINE L1 -864 5282 4381 3335 221 32 5 chr12 18852437 18853227 -125429262 + L1M2 LINE L1 3584 4394 -1752 * 440 330 98 63 chr12 18853414 18854062 -125428427 - HERV16 LTR ERVL -4097 899 224 811 278 32 0 chr12 18854062 18854278 -125428211 + MER58A DNA MER1_type 1 223 -1 440 330 98 63 chr12 18854278 18854316 -125428173 - HERV16 LTR ERVL -4772 224 189 228 319 11 43 chr12 18854327 18854421 -125428068 + MIR SINE MIR 62 152 -110 320 296 59 46 chr12 18855250 18855526 -125426963 - MER110A LTR ERV1 0 491 218 1045 287 62 71 chr12 18855714 18856210 -125426279 + MLT1E2 LTR MaLR 49 505 -121 1790 167 3 3 chr12 18856210 18856516 -125425973 + AluSx SINE Alu 1 306 0 1045 287 62 71 chr12 18856516 18856629 -125425860 + MLT1E2 LTR MaLR 505 617 -9 234 179 51 90 chr12 18856646 18856724 -125425765 - MER110A LTR ERV1 -353 115 41 423 132 0 0 chr12 18857416 18857484 -125425005 + (TA)n Simple_repeat Simple_repeat 2 69 0 2274 105 0 0 chr12 18858381 18858677 -125423812 - AluSg SINE Alu -12 298 3 299 294 42 17 chr12 18858728 18858847 -125423642 + MIR SINE MIR 138 259 -3 43 47 0 0 chr12 18858888 18858952 -125423537 + AT_rich Low_complexity Low_complexity 1 64 0 25 31 0 0 chr12 18859366 18859398 -125423091 + AT_rich Low_complexity Low_complexity 1 32 0 29 0 0 0 chr12 18860116 18860145 -125422344 + AT_rich Low_complexity Low_complexity 1 29 0 21130 42 6 2 chr12 18861676 18865121 -125417368 - L1PA4 LINE L1 0 6155 2697 20765 58 3 1 chr12 18865258 18867893 -125414596 - L1P LINE L1 -3172 2974 334 420 274 19 0 chr12 18867900 18868057 -125414432 + L1MDa LINE L1 2491 2650 -3890 * 702 180 70 0 chr12 18868053 18868225 -125414264 + L1MA7 LINE L1 6108 6291 0 229 167 62 0 chr12 18868288 18868336 -125414153 - L1M4 LINE L1 -3796 2350 2300 377 259 61 0 chr12 18868387 18868518 -125413971 - L1M4 LINE L1 -1227 4919 4781 3840 239 51 22 chr12 18868526 18870363 -125412126 - L1M4 LINE L1 -384 5794 3902 2309 45 0 0 chr12 18870821 18871107 -125411382 - L1PA5 LINE L1 -3 6151 5866 327 246 40 62 chr12 18872202 18872426 -125410063 - MER113 DNA MER1_type? -299 222 4 23 68 0 0 chr12 18873150 18873194 -125409295 + AT_rich Low_complexity Low_complexity 1 44 0 21 71 0 0 chr12 18873300 18873342 -125409147 + AT_rich Low_complexity Low_complexity 1 42 0 225 356 17 17 chr12 18873434 18873552 -125408937 + MIR SINE MIR 74 191 -71 21 0 0 0 chr12 18873775 18873796 -125408693 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 18874377 18874406 -125408083 + AT_rich Low_complexity Low_complexity 1 29 0 392 286 128 50 chr12 18874431 18874786 -125407703 + L1MDa LINE L1 1269 1667 -4863 4262 193 32 55 chr12 18874811 18876794 -125405695 + L1MA8 LINE L1 3818 5726 -565 1361 163 56 14 chr12 18876794 18877075 -125405414 + L1MA8 LINE L1 5977 6276 -15 444 333 33 33 chr12 18877137 18877377 -125405112 + L1MDa LINE L1 1712 1951 -4589 1330 166 143 21 chr12 18880434 18880781 -125401708 - MSTA LTR MaLR -29 394 1 22 0 0 0 chr12 18881018 18881040 -125401449 + AT_rich Low_complexity Low_complexity 1 22 0 558 311 110 23 chr12 18883132 18883431 -125399058 + L3 LINE CR1 1217 1541 -36 25 31 0 0 chr12 18883498 18883530 -125398959 + AT_rich Low_complexity Low_complexity 1 32 0 257 262 58 29 chr12 18883831 18883934 -125398555 - MIR SINE MIR -68 194 89 200 167 0 56 chr12 18884114 18884168 -125398321 + A-rich Low_complexity Low_complexity 3 53 0 * 291 157 0 0 chr12 18884160 18884211 -125398278 + GA-rich Low_complexity Low_complexity 2 52 0 24 0 0 0 chr12 18886099 18886123 -125396366 + AT_rich Low_complexity Low_complexity 1 24 0 2550 39 0 0 chr12 18886242 18886547 -125395942 + AluY SINE Alu 1 305 -6 1358 275 123 16 chr12 18887264 18887752 -125394737 + MLT1F LTR MaLR 1 540 -2 271 385 26 17 chr12 18887766 18887883 -125394606 + L2 LINE L2 3155 3272 0 180 0 0 0 chr12 18888183 18888203 -125394286 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr12 18888484 18888513 -125393976 + AT_rich Low_complexity Low_complexity 1 29 0 2336 57 40 0 chr12 18889407 18889743 -125392746 - AluY SINE Alu 0 348 1 21 57 0 0 chr12 18889884 18889919 -125392570 + AT_rich Low_complexity Low_complexity 1 35 0 350 292 185 0 chr12 18890213 18890343 -125392146 + L2 LINE L2 3159 3312 -1 27 62 0 0 chr12 18891336 18891384 -125391105 + AT_rich Low_complexity Low_complexity 1 48 0 545 78 0 0 chr12 18892313 18892390 -125390099 + AluY SINE Alu 177 253 -58 337 323 57 31 chr12 18892537 18892729 -125389760 - L2 LINE L2 -874 2440 2244 23 0 0 0 chr12 18893167 18893190 -125389299 + AT_rich Low_complexity Low_complexity 1 23 0 204 299 0 30 chr12 18893472 18893539 -125388950 + L2 LINE L2 3204 3268 -4 264 319 59 25 chr12 18895078 18895197 -125387292 + MIR SINE MIR 60 182 -80 706 215 17 35 chr12 18895215 18895387 -125387102 + MER45A DNA AcHobo 1 169 -9 23 0 0 0 chr12 18895831 18895854 -125386635 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr12 18897128 18897157 -125385332 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr12 18897371 18897405 -125385084 + AT_rich Low_complexity Low_complexity 1 34 0 25 83 0 0 chr12 18897563 18897623 -125384866 + AT_rich Low_complexity Low_complexity 1 60 0 22 0 0 0 chr12 18897814 18897836 -125384653 + AT_rich Low_complexity Low_complexity 1 22 0 344 274 18 73 chr12 18898180 18898344 -125384145 - L2 LINE L2 0 3313 3159 2034 196 125 51 chr12 18898784 18899391 -125383098 - L1MB8 LINE L1 -13 6165 5514 1445 114 0 0 chr12 18899393 18899603 -125382886 + L1PA13 LINE L1 5870 6079 -84 1536 241 69 20 chr12 18899618 18900310 -125382179 - L1MB8 LINE L1 -656 5528 4790 225 167 42 21 chr12 18900456 18900504 -125381985 + GA-rich Low_complexity Low_complexity 3 51 0 1237 272 80 12 chr12 18900504 18901066 -125381423 + L1M4 LINE L1 3035 3634 -2512 1332 94 6 6 chr12 18901077 18901258 -125381231 + AluSq SINE Alu 113 293 -20 189 171 0 0 chr12 18901494 18901529 -125380960 + (TA)n Simple_repeat Simple_repeat 2 36 0 297 0 0 0 chr12 18901529 18901562 -125380927 + (CA)n Simple_repeat Simple_repeat 2 34 0 876 272 70 33 chr12 18901678 18902130 -125380359 + L1M4c LINE L1 2084 2583 -3799 2060 105 3 35 chr12 18902130 18902445 -125380044 + AluSc SINE Alu 1 305 -4 876 272 70 33 chr12 18902445 18902635 -125379854 + L1M4c LINE L1 2583 2765 -3617 263 209 23 12 chr12 18902642 18902728 -125379761 - L1MC4 LINE L1 -1339 6703 6617 207 0 0 0 chr12 18902733 18902756 -125379733 + (TG)n Simple_repeat Simple_repeat 1 23 0 1769 132 4 0 chr12 18902947 18903204 -125379285 - AluSx SINE Alu -38 274 17 4831 260 76 41 chr12 18903252 18905138 -125377351 - L1M4 LINE L1 -4879 1976 11 22 0 0 0 chr12 18905238 18905260 -125377229 + AT_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chr12 18905378 18905418 -125377071 + AT_rich Low_complexity Low_complexity 1 40 0 244 345 0 18 chr12 18905869 18905982 -125376507 + CT-rich Low_complexity Low_complexity 3 113 0 2335 103 130 8 chr12 18906456 18906855 -125375634 + LTR7 LTR ERV1 1 448 -2 23 68 0 0 chr12 18907567 18907611 -125374878 + AT_rich Low_complexity Low_complexity 1 44 0 25 95 0 0 chr12 18908736 18908810 -125373679 + AT_rich Low_complexity Low_complexity 1 74 0 23 78 0 0 chr12 18909316 18909367 -125373122 + AT_rich Low_complexity Low_complexity 1 51 0 262 156 31 0 chr12 18910424 18910488 -125372001 + (TA)n Simple_repeat Simple_repeat 2 67 0 449 290 37 67 chr12 18910716 18910939 -125371550 + MLT1H1 LTR MaLR 25 245 -310 350 270 34 62 chr12 18913976 18914154 -125368335 - MIR SINE MIR -6 256 84 822 241 77 14 chr12 18915139 18915359 -125367130 + MIR SINE MIR 29 262 0 318 211 8 106 chr12 18915741 18915864 -125366625 - L1MC4 LINE L1 -1337 6705 6595 362 159 0 0 chr12 18916103 18916166 -125366323 + L1MA6 LINE L1 6227 6289 -11 22 0 0 0 chr12 18916525 18916547 -125365942 + AT_rich Low_complexity Low_complexity 1 22 0 26 100 0 0 chr12 18916775 18916845 -125365644 + AT_rich Low_complexity Low_complexity 1 70 0 1155 206 12 4 chr12 18917300 18917389 -125365100 + L1MA10 LINE L1 6071 6158 -176 207 0 0 0 chr12 18917389 18917412 -125365077 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1155 206 12 4 chr12 18917412 18917579 -125364910 + L1MA10 LINE L1 6158 6329 -5 183 357 9 45 chr12 18917717 18917829 -125364660 - MER5A DNA MER1_type -80 109 2 21 0 0 0 chr12 18917855 18917876 -125364613 + AT_rich Low_complexity Low_complexity 1 21 0 477 307 82 26 chr12 18918269 18918500 -125363989 + MIR SINE MIR 18 261 -1 22 56 0 0 chr12 18918657 18918693 -125363796 + AT_rich Low_complexity Low_complexity 1 36 0 275 271 7 79 chr12 18918695 18918835 -125363654 - HAL1 LINE L1 -5 2502 2373 3502 203 121 44 chr12 18918836 18919340 -125363149 - Tigger6a DNA MER2_type -514 1083 619 2644 101 5 8 chr12 18919340 18919716 -125362773 - THE1C LTR MaLR 0 375 1 9644 112 33 43 chr12 18919716 18921312 -125361177 - THE1C-int LTR MaLR 0 1580 1 2609 118 11 8 chr12 18921312 18921686 -125360803 - THE1C LTR MaLR 0 375 1 3502 203 121 44 chr12 18921686 18922182 -125360307 - Tigger6a DNA MER2_type -977 620 4 4311 214 20 9 chr12 18922373 18923272 -125359217 + MER49 LTR ERV1 15 923 0 231 304 71 68 chr12 18923354 18923676 -125358813 - MLT1I LTR MaLR -14 395 73 882 323 56 39 chr12 18923748 18924716 -125357773 - HAL1 LINE L1 -346 2161 1178 218 336 88 9 chr12 18925462 18925575 -125356914 - MIR3 SINE MIR -4 204 83 35036 49 7 2 chr12 18925624 18931748 -125350741 - L1PA4 LINE L1 -11 6144 1 23 33 0 0 chr12 18932204 18932234 -125350255 + AT_rich Low_complexity Low_complexity 1 30 0 216 346 119 10 chr12 18933007 18933108 -125349381 - L2 LINE L2 -221 3051 2940 23 68 0 0 chr12 18933913 18933957 -125348532 + AT_rich Low_complexity Low_complexity 1 44 0 2293 90 0 0 chr12 18934574 18934885 -125347604 + AluYa5 SINE Alu 1 311 0 1919 129 11 11 chr12 18935417 18935748 -125346741 - AluSp SINE Alu 0 331 1 783 326 164 27 chr12 18935752 18936453 -125346036 + L2 LINE L2 2516 3313 0 754 295 0 0 chr12 18939061 18939251 -125343238 + MIR SINE MIR 40 229 -33 3871 179 27 14 chr12 18939888 18940049 -125342440 - L1MA10 LINE L1 -11 6323 6166 321 26 0 0 chr12 18940049 18940087 -125342402 + (TG)n Simple_repeat Simple_repeat 2 39 0 3871 179 27 14 chr12 18940087 18940714 -125341775 - L1MA10 LINE L1 -168 6166 5525 1942 146 17 0 chr12 18941151 18941439 -125341050 - AluJb SINE Alu -19 293 1 1245 115 0 26 chr12 18942021 18942212 -125340277 - L1PA14 LINE L1 -9 6152 5967 183 255 21 0 chr12 18943814 18943861 -125338628 + MER5A DNA MER1_type 55 102 -87 279 133 0 0 chr12 18944414 18944459 -125338030 + (TA)n Simple_repeat Simple_repeat 1 45 0 641 11 23 23 chr12 18944730 18944818 -125337671 - L1PA4 LINE L1 0 6155 6068 317 24 24 0 chr12 18945163 18945205 -125337284 + (TG)n Simple_repeat Simple_repeat 2 44 0 26 64 0 0 chr12 18946064 18946111 -125336378 + AT_rich Low_complexity Low_complexity 1 47 0 23 33 0 0 chr12 18947387 18947417 -125335072 + AT_rich Low_complexity Low_complexity 1 30 0 2320 109 0 6 chr12 18949262 18949575 -125332914 - AluSx SINE Alu -1 311 1 1805 117 224 8 chr12 18950433 18950785 -125331704 + MSTA LTR MaLR 1 428 0 1543 169 6 60 chr12 18951364 18951678 -125330811 + AluJb SINE Alu 1 297 -15 301 338 78 39 chr12 18954383 18954537 -125327952 - MIR SINE MIR -17 245 86 212 235 0 20 chr12 18957815 18957866 -125324623 - L2 LINE L2 0 3313 3264 2191 91 27 0 chr12 18957946 18958242 -125324247 + AluSq SINE Alu 1 304 -9 186 43 0 0 chr12 18958383 18958406 -125324083 + (TA)n Simple_repeat Simple_repeat 1 23 0 7818 12 1 0 chr12 18959070 18959965 -125322524 - L1PA2 LINE L1 0 6155 5260 407 41 0 0 chr12 18959964 18960013 -125322476 + L1PA2 LINE L1 5223 5271 -875 * 520 199 59 29 chr12 18960006 18960142 -125322347 - L1MB8 LINE L1 -41 6137 5998 22 0 0 0 chr12 18960163 18960185 -125322304 + AT_rich Low_complexity Low_complexity 1 22 0 233 335 132 33 chr12 18960406 18960558 -125321931 - MLT1J LTR MaLR -173 338 172 24 32 0 0 chr12 18960749 18960780 -125321709 + AT_rich Low_complexity Low_complexity 1 31 0 263 114 71 0 chr12 18961259 18961329 -125321160 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 1064 331 90 46 chr12 18961504 18962727 -125319762 - L2 LINE L2 -18 3295 2022 228 202 36 24 chr12 18964333 18964417 -125318072 + (TA)n Simple_repeat Simple_repeat 2 86 0 266 359 88 24 chr12 18966169 18966339 -125316150 - MIR3 SINE MIR -15 193 13 490 245 94 61 chr12 18966989 18967201 -125315288 + MER20 DNA MER1_type 1 219 0 703 231 0 20 chr12 18967458 18967605 -125314884 + FRAM SINE Alu 20 163 -13 22 0 0 0 chr12 18967652 18967674 -125314815 + AT_rich Low_complexity Low_complexity 1 22 0 313 325 9 18 chr12 18968258 18968372 -125314117 + L2 LINE L2 3199 3311 -2 3276 194 123 51 chr12 18968831 18970340 -125312149 - MER52A LTR ERV1 -5 1750 1 1032 152 0 0 chr12 18970497 18970648 -125311841 - AluSg/x SINE Alu -25 285 135 454 291 101 64 chr12 18971044 18971512 -125310977 - L2 LINE L2 -95 3177 2700 845 192 0 7 chr12 18971532 18971683 -125310806 - AluJo SINE Alu -16 286 137 2132 91 14 0 chr12 18971686 18971858 -125310631 - AluSp SINE Alu -21 292 113 962 42 0 0 chr12 18971858 18971977 -125310512 - L1PA5 LINE L1 -2 6152 6034 2132 91 14 0 chr12 18971977 18972090 -125310399 - AluSp SINE Alu -200 113 3 848 158 0 0 chr12 18972095 18972222 -125310267 - AluJo SINE Alu -182 130 4 381 363 138 11 chr12 18972561 18973004 -125309485 - L2 LINE L2 -1004 2310 1812 372 298 71 14 chr12 18973968 18974109 -125308380 - MIR SINE MIR -95 167 19 21 57 0 0 chr12 18975908 18975943 -125306546 + AT_rich Low_complexity Low_complexity 1 35 0 1118 289 58 83 chr12 18977102 18977909 -125304580 - L2 LINE L2 -84 3229 2442 333 287 180 41 chr12 18977909 18978153 -125304336 - L2 LINE L2 -1401 1913 1636 270 340 51 6 chr12 18978208 18978364 -125304125 - L2 LINE L2 -2155 1159 997 606 229 25 0 chr12 18978712 18978834 -125303655 + MER45A DNA AcHobo 2 126 -52 823 236 137 22 chr12 18978872 18979185 -125303304 - LTR52 LTR ERVL -70 351 3 258 299 120 0 chr12 18979250 18979367 -125303122 - LTR16A LTR ERVL -21 429 299 21 36 0 0 chr12 18980360 18980388 -125302101 + AT_rich Low_complexity Low_complexity 1 28 0 1750 202 64 13 chr12 18981257 18981634 -125300855 - MSTD LTR MaLR 0 396 1 25 0 0 0 chr12 18981726 18981751 -125300738 + AT_rich Low_complexity Low_complexity 1 25 0 1572 178 3 28 chr12 18981842 18982129 -125300360 + AluJb SINE Alu 1 280 -32 327 49 0 0 chr12 18982130 18982171 -125300318 + (GA)n Simple_repeat Simple_repeat 1 41 0 416 194 20 0 chr12 18982199 18982297 -125300192 + GA-rich Low_complexity Low_complexity 1 100 0 270 306 142 35 chr12 18982432 18982693 -125299796 - L3b LINE CR1 0 1583 1295 1791 124 0 33 chr12 18982795 18983069 -125299420 + AluSx SINE Alu 37 301 -11 509 290 170 26 chr12 18983549 18983884 -125298605 - L2 LINE L2 -228 3085 2688 * 798 267 53 50 chr12 18983849 18984246 -125298243 + L2 LINE L2 2183 2580 -734 1087 303 141 12 chr12 18984258 18984747 -125297742 - L2 LINE L2 -588 2726 2175 410 346 0 39 chr12 18984818 18984997 -125297492 - L2 LINE L2 -1330 1984 1813 24 0 0 0 chr12 18985943 18985967 -125296522 + AT_rich Low_complexity Low_complexity 1 24 0 507 189 98 14 chr12 18986600 18986743 -125295746 - ORSL DNA AcHobo -119 156 2 2771 225 89 39 chr12 19088312 19088864 -125193625 - L1MC3 LINE L1 -18 7767 7155 2213 81 0 37 chr12 19088864 19089186 -125193303 - AluSg SINE Alu 0 310 1 2771 225 89 39 chr12 19089186 19089496 -125192993 - L1MC3 LINE L1 -630 7155 6862 23885 172 25 25 chr12 19089501 19095881 -125186608 - L1PA10 LINE L1 -14 6469 10 5594 201 81 16 chr12 19095882 19096544 -125185945 - L1MC3 LINE L1 -909 6876 6258 1803 171 12 21 chr12 19096544 19096884 -125185605 + MER1B DNA MER1_type 1 337 0 5594 201 81 16 chr12 19096884 19097611 -125184878 - L1MC3 LINE L1 -1527 6258 5397 1077 187 76 0 chr12 19097613 19097645 -125184844 + AluJb SINE Alu 90 118 -194 183 42 0 0 chr12 19097645 19097669 -125184820 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1077 187 76 0 chr12 19097669 19097834 -125184655 + AluJb SINE Alu 118 302 -10 3258 259 57 14 chr12 19097835 19099073 -125183416 - L1MC3 LINE L1 -793 5353 4112 1103 277 58 12 chr12 19099073 19099213 -125183276 - L1MC3 LINE L1 -2956 3190 3058 2340 98 0 3 chr12 19099213 19099518 -125182971 - AluSc SINE Alu -5 304 1 1103 277 58 12 chr12 19099518 19099876 -125182613 - L1MC3 LINE L1 -3088 3058 2669 526 281 60 15 chr12 19099877 19100076 -125182413 + MIR SINE MIR 8 215 -47 22 0 0 0 chr12 19100118 19100140 -125182349 + AT_rich Low_complexity Low_complexity 1 22 0 209 328 57 94 chr12 19100902 19101183 -125181306 + L2 LINE L2 2852 3142 -130 456 67 0 0 chr12 19101183 19101243 -125181246 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 2434 56 3 0 chr12 19101246 19101550 -125180939 - AluY SINE Alu -6 305 1 209 328 57 94 chr12 19101550 19101666 -125180823 + L2 LINE L2 3144 3238 -34 466 343 23 17 chr12 19102167 19102339 -125180150 - LTR16C LTR ERVL -189 302 130 1178 345 61 25 chr12 19103183 19104065 -125178424 - HERV16 LTR ERVL -2102 2894 1981 21 71 0 0 chr12 19104837 19104879 -125177610 + AT_rich Low_complexity Low_complexity 1 42 0 376 288 101 0 chr12 19105234 19105400 -125177089 - MIR SINE MIR -47 215 31 2327 264 26 46 chr12 19106384 19106941 -125175548 - L1ME1 LINE L1 -23 6143 5576 1784 142 0 43 chr12 19106941 19107244 -125175245 - AluSx SINE Alu -22 290 1 2470 59 0 0 chr12 19107250 19107555 -125174934 - AluY SINE Alu -6 305 1 2327 264 26 46 chr12 19107555 19107836 -125174653 - L1ME1 LINE L1 -595 5571 5315 25 0 0 0 chr12 19108207 19108232 -125174257 + AT_rich Low_complexity Low_complexity 1 25 0 262 266 0 0 chr12 19109196 19109260 -125173229 + 7SK RNA RNA 33 96 -97 379 263 102 8 chr12 19109687 19109805 -125172684 - MER94 DNA DNA -1 133 5 1758 144 30 30 chr12 19109984 19110282 -125172207 + AluSx SINE Alu 1 298 -14 433 245 42 94 chr12 19113241 19113433 -125169056 - L2 LINE L2 -2 3311 3130 231 274 0 82 chr12 19113604 19113677 -125168812 - MIR SINE MIR -73 189 123 204 321 19 0 chr12 19113836 19113889 -125168600 + L2 LINE L2 3149 3202 -70 312 287 40 67 chr12 19114131 19114281 -125168208 + L2 LINE L2 3168 3313 0 298 245 160 0 chr12 19114404 19114498 -125167991 - MIR SINE MIR -100 162 54 297 326 43 0 chr12 19115219 19115360 -125167129 + MER103 DNA DNA 3 149 -17 23 54 0 0 chr12 19115726 19115763 -125166726 + AT_rich Low_complexity Low_complexity 1 37 0 357 314 27 53 chr12 19116456 19116644 -125165845 - L1ME3A LINE L1 -9 6161 5979 253 171 237 0 chr12 19116656 19116732 -125165757 - L1ME3A LINE L1 -233 5937 5844 23 54 0 0 chr12 19116744 19116781 -125165708 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr12 19117013 19117035 -125165454 + AT_rich Low_complexity Low_complexity 1 22 0 273 75 0 0 chr12 19117612 19117652 -125164837 + (TC)n Simple_repeat Simple_repeat 2 41 0 262 307 144 20 chr12 19118175 19118328 -125164161 - LTR67 LTR ERVL -357 200 29 26 50 0 0 chr12 19118782 19118822 -125163667 + AT_rich Low_complexity Low_complexity 1 40 0 180 310 75 80 chr12 19119901 19120114 -125162375 + MIR SINE MIR 45 256 -6 1518 99 0 5 chr12 19123149 19123374 -125159115 - AluSg/x SINE Alu 0 306 83 22 35 0 0 chr12 19124501 19124530 -125157959 + AT_rich Low_complexity Low_complexity 1 29 0 631 254 14 39 chr12 19125085 19125137 -125157352 + L1MC1 LINE L1 3045 3097 -4190 2516 62 3 0 chr12 19125137 19125446 -125157043 + AluY SINE Alu 1 310 -1 631 254 14 39 chr12 19125446 19125676 -125156813 + L1MC1 LINE L1 3097 3320 -3967 928 212 111 9 chr12 19125686 19125912 -125156577 + L1M3e LINE L1 2 250 -6780 2967 256 70 47 chr12 19125930 19127816 -125154673 + L1M3e LINE L1 926 2826 -4281 2025 243 12 36 chr12 19127821 19128315 -125154174 - MER70B LTR ERVL -2 576 95 578 165 50 25 chr12 19128317 19128438 -125154051 - MER70B LTR ERVL -416 162 39 1020 254 88 53 chr12 19128474 19129410 -125153079 + L1MA9 LINE L1 2955 3942 -3623 * 3945 199 30 26 chr12 19129398 19131140 -125151349 + L1MA9 LINE L1 5895 7726 -5 9210 242 25 28 chr12 19131153 19134160 -125148329 + L1MC1 LINE L1 3277 6292 -1001 2246 98 0 10 chr12 19134160 19134456 -125148033 + AluSc SINE Alu 1 293 -16 9210 242 25 28 chr12 19134456 19135026 -125147463 + L1MC1 LINE L1 6292 6840 -453 2112 127 0 0 chr12 19135026 19135317 -125147172 + AluSx SINE Alu 1 291 -21 9210 242 25 28 chr12 19135317 19135757 -125146732 + L1MC1 LINE L1 6840 7280 -13 628 234 1 1 chr12 19135797 19135941 -125146548 + L1MB5 LINE L1 5979 6119 -55 299 250 118 19 chr12 19136064 19136202 -125146287 - MIR SINE MIR -47 215 56 2549 269 72 22 chr12 19137576 19138920 -125143569 - L1MEc LINE L1 -3933 2463 1053 911 231 20 12 chr12 19138987 19139238 -125143251 - L1MEc LINE L1 -5471 925 673 21 57 0 0 chr12 19139293 19139328 -125143161 + AT_rich Low_complexity Low_complexity 1 35 0 199 260 0 20 chr12 19139668 19139718 -125142771 - L3 LINE CR1 -5 1572 1524 420 190 95 26 chr12 19139768 19139884 -125142605 - L1M4 LINE L1 -1947 4199 4076 1603 170 3 17 chr12 19139898 19140192 -125142297 - L1PB3 LINE L1 0 6154 5865 1382 275 135 21 chr12 19140239 19140818 -125141671 - L1MEc LINE L1 -5743 653 9 * 3664 243 47 19 chr12 19140813 19141010 -125141479 - L1MD2 LINE L1 0 6359 6169 348 43 0 0 chr12 19141010 19141056 -125141433 + (TG)n Simple_repeat Simple_repeat 1 46 0 3664 243 47 19 chr12 19141056 19141105 -125141384 - L1MD2 LINE L1 -190 6169 6123 2078 138 3 0 chr12 19141105 19141410 -125141079 + AluSx SINE Alu 1 306 -6 3664 243 47 19 chr12 19141410 19142952 -125139537 - L1MD2 LINE L1 -236 6123 4518 21 36 0 0 chr12 19142989 19143017 -125139472 + AT_rich Low_complexity Low_complexity 1 28 0 5745 249 40 22 chr12 19144358 19145900 -125136589 + L1PA15 LINE L1 1286 2887 -3910 1839 158 3 16 chr12 19145900 19146216 -125136273 + AluSx SINE Alu 1 312 0 5745 249 40 22 chr12 19146216 19147150 -125135339 + L1PA15 LINE L1 2887 3803 -2994 8264 224 12 3 chr12 19147152 19148607 -125133882 + L1PA15 LINE L1 3909 5350 -1466 210 91 0 0 chr12 19148607 19148640 -125133849 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 8264 224 12 3 chr12 19148640 19150079 -125132410 + L1PA15 LINE L1 5350 6816 0 26 50 0 0 chr12 19150184 19150224 -125132265 + AT_rich Low_complexity Low_complexity 1 40 0 400 275 40 73 chr12 19150389 19150636 -125131853 - L1ME3A LINE L1 -265 5905 5675 4428 190 33 6 chr12 19150710 19151566 -125130923 + Tigger2 DNA MER2_type 1666 2544 -174 880 158 0 0 chr12 19151566 19151693 -125130796 + AluSx SINE Alu 1 127 -185 42231 53 8 4 chr12 19151715 19157830 -125124659 + L1PA4 LINE L1 2 6142 -13 1156 149 0 0 chr12 19157835 19158009 -125124480 + AluSx SINE Alu 127 300 -10 207 48 48 24 chr12 19158009 19158051 -125124438 + (TA)n Simple_repeat Simple_repeat 1 43 0 784 202 66 27 chr12 19158063 19158246 -125124243 + Tigger2 DNA MER2_type 2528 2717 -1 441 0 0 0 chr12 19158247 19158296 -125124193 + (TG)n Simple_repeat Simple_repeat 2 50 0 338 303 29 63 chr12 19158296 19158471 -125124018 - L1MCa LINE L1 -4849 1577 1409 374 312 85 62 chr12 19158555 19159036 -125123453 - L1MCa LINE L1 -5116 1491 1000 301 196 31 0 chr12 19159248 19159345 -125123144 - L1MA3 LINE L1 0 6305 6206 365 147 29 15 chr12 19159345 19159407 -125123082 + L1MA4A LINE L1 5876 5938 -365 21 36 0 0 chr12 19159552 19159580 -125122909 + AT_rich Low_complexity Low_complexity 1 28 0 459 287 77 24 chr12 19160935 19161144 -125121345 - MIR SINE MIR -11 251 32 34654 95 16 9 chr12 19161394 19168562 -125113927 + HERV9 LTR ERV1 504 8399 0 4766 127 60 19 chr12 19168568 19169358 -125113131 + LTR12 LTR ERV1 5 826 0 202 200 0 0 chr12 19169367 19169407 -125113082 + GA-rich Low_complexity Low_complexity 1 40 0 276 250 29 29 chr12 19169649 19169753 -125112736 + A-rich Low_complexity Low_complexity 3 106 0 557 130 32 32 chr12 19171634 19171757 -125110732 + L1MB1 LINE L1 6044 6166 -2 24 32 0 0 chr12 19171844 19171875 -125110614 + AT_rich Low_complexity Low_complexity 1 31 0 964 55 16 0 chr12 19171880 19172008 -125110481 - L1PA14 LINE L1 -17 6144 6015 323 318 0 9 chr12 19172008 19172118 -125110371 + CT-rich Low_complexity Low_complexity 4 112 0 24 77 0 0 chr12 19172444 19172496 -125109993 + AT_rich Low_complexity Low_complexity 1 52 0 384 312 123 26 chr12 19172506 19172660 -125109829 - MIR SINE MIR -88 174 6 23 54 0 0 chr12 19172661 19172698 -125109791 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr12 19172713 19172739 -125109750 + AT_rich Low_complexity Low_complexity 1 26 0 228 242 30 15 chr12 19174038 19174104 -125108385 + L1ME LINE L1 5518 5584 -537 2315 70 23 0 chr12 19174104 19174405 -125108084 + AluY SINE Alu 1 308 -3 22 56 0 0 chr12 19174671 19174707 -125107782 + AT_rich Low_complexity Low_complexity 1 36 0 1568 220 0 0 chr12 19175652 19175952 -125106537 - AluJb SINE Alu -10 302 3 285 272 12 0 chr12 19176044 19176125 -125106364 - L1ME LINE L1 -522 5599 5518 181 227 45 0 chr12 19176940 19176984 -125105505 - L2 LINE L2 -9 3304 3259 2111 126 0 10 chr12 19177532 19177833 -125104656 + AluSx SINE Alu 3 300 -12 439 149 16 3 chr12 19178009 19178099 -125104390 - MSTC LTR MaLR 0 428 338 4357 232 32 19 chr12 19178122 19179616 -125102873 - L1PA13 LINE L1 -4068 2729 1208 2697 180 50 21 chr12 19179654 19180272 -125102217 + L1MA7 LINE L1 5646 6281 -10 204 125 0 0 chr12 19180422 19180454 -125102035 + (TATATG)n Simple_repeat Simple_repeat 4 35 0 309 326 0 0 chr12 19180455 19180544 -125101945 + L1MC4 LINE L1 6615 6703 -1339 207 100 0 0 chr12 19180795 19180825 -125101664 + (TG)n Simple_repeat Simple_repeat 2 31 0 1882 243 24 21 chr12 19180825 19181285 -125101204 - L1M3b LINE L1 -5817 464 4 448 315 87 34 chr12 19181288 19181609 -125100880 + L2 LINE L2 2192 2529 -785 323 268 129 57 chr12 19181689 19181898 -125100591 + MIR SINE MIR 36 259 -3 322 378 67 22 chr12 19181921 19182191 -125100298 + L2 LINE L2 2580 2861 -453 210 71 0 0 chr12 19183082 19183110 -125099379 + (GA)n Simple_repeat Simple_repeat 1 28 0 2289 118 0 0 chr12 19183544 19183850 -125098639 + AluSc SINE Alu 1 306 -3 349 298 137 32 chr12 19184520 19184644 -125097845 - L2 LINE L2 -10 3262 3126 782 327 38 49 chr12 19184662 19185111 -125097378 + L1MB1 LINE L1 1356 1799 -5697 2700 265 70 20 chr12 19185647 19187245 -125095244 + L1MB1 LINE L1 2012 3519 -4046 * 8719 201 34 63 chr12 19187235 19189086 -125093403 + L1MB1 LINE L1 4279 6181 -1406 1709 166 19 22 chr12 19189086 19189399 -125093090 + AluSx SINE Alu 1 312 0 8719 201 34 63 chr12 19189399 19190490 -125091999 + L1MB1 LINE L1 6181 7112 -475 6350 121 36 22 chr12 19190490 19191546 -125090943 - MER11C LTR ERVK 0 1071 1 8719 201 34 63 chr12 19191546 19191991 -125090498 + L1MB1 LINE L1 7112 7568 -19 262 268 46 108 chr12 19192375 19192569 -125089920 - L2 LINE L2 0 3313 3132 1574 278 90 8 chr12 19192569 19193102 -125089387 + L1MEc LINE L1 134 710 -5686 670 314 36 61 chr12 19193107 19193470 -125089019 + L2 LINE L2 2943 3296 -17 342 235 26 43 chr12 19193728 19193843 -125088646 - L2 LINE L2 -1 3312 3200 461 255 38 0 chr12 19193968 19194120 -125088369 + L1ME2 LINE L1 6003 6161 -1 21 0 0 0 chr12 19194188 19194209 -125088280 + AT_rich Low_complexity Low_complexity 1 21 0 1967 97 81 88 chr12 19194591 19194985 -125087504 + LTR14B LTR ERVK 7 608 0 424 39 0 0 chr12 19194985 19195036 -125087453 + HERVK14 LTR ERVK 1 51 -5894 416 250 17 9 chr12 19195036 19195152 -125087337 + L1MB1 LINE L1 5844 5960 -229 348 203 25 0 chr12 19195154 19195233 -125087256 + L1M3 LINE L1 5613 5693 -641 4655 66 55 6 chr12 19195233 19195887 -125086602 + HERVK14 LTR ERVK 100 785 -5160 8401 74 29 5 chr12 19195923 19197085 -125085404 + HERV17 LTR ERV1 824 2013 -6613 * 9986 74 14 1 chr12 19197071 19198380 -125084109 + HERV17 LTR ERV1 2430 3754 -4872 1335 0 0 0 chr12 19198359 19198508 -125083981 + HERV17 LTR ERV1 5405 5553 -3073 * 305 122 0 0 chr12 19198507 19198556 -125083933 + HERV17 LTR ERV1 433 481 -8145 * 3254 62 33 17 chr12 19198556 19199198 -125083291 + HERVK14 LTR ERVK 5038 5759 -186 304 212 0 17 chr12 19199198 19199273 -125083216 + MER41C LTR ERV1 1 63 -491 500 92 153 20 chr12 19199273 19199371 -125083118 + HERVK14 LTR ERVK 5835 5945 0 249 85 21 43 chr12 19199374 19199421 -125083068 + LTR14B LTR ERVK 1 46 -562 * 1817 132 103 27 chr12 19199409 19199779 -125082710 + LTR14B LTR ERVK 211 608 0 22 0 0 0 chr12 19200045 19200067 -125082422 + AT_rich Low_complexity Low_complexity 1 22 0 3550 162 35 56 chr12 19200159 19200961 -125081528 - LTR1 LTR ERV1 0 785 1 21 0 0 0 chr12 19202667 19202688 -125079801 + AT_rich Low_complexity Low_complexity 1 21 0 325 283 94 29 chr12 19203109 19203247 -125079242 - L3b LINE CR1 -135 1448 1302 581 311 183 35 chr12 19205568 19206048 -125076441 - MLT1H1 LTR MaLR -2 593 1 509 367 33 11 chr12 19207051 19207476 -125075013 + ERVL LTR ERVL 3833 4314 -1211 24 0 0 0 chr12 19209435 19209459 -125073030 + AT_rich Low_complexity Low_complexity 1 24 0 2651 83 2 28 chr12 19209717 19209774 -125072715 + L1PA13 LINE L1 5773 5830 -333 2195 122 0 0 chr12 19209774 19210078 -125072411 + AluY SINE Alu 1 304 -7 2651 83 2 28 chr12 19210078 19210415 -125072074 + L1PA13 LINE L1 5830 6157 -6 239 269 8 108 chr12 19211388 19211518 -125070971 - MIR3 SINE MIR -2 206 90 2249 61 0 67 chr12 19213760 19214088 -125068401 - AluY SINE Alu -5 306 1 721 316 20 0 chr12 19214109 19214362 -125068127 + L2 LINE L2 1442 1699 -1615 2316 283 53 30 chr12 19214375 19215203 -125067286 + L2 LINE L2 1923 2769 -545 7268 216 21 13 chr12 19216030 19218416 -125064073 - L1MA9 LINE L1 -374 6959 4555 766 244 0 12 chr12 19218417 19218585 -125063904 + LTR28 LTR ERV1 1 166 -854 505 251 78 33 chr12 19218632 19218923 -125063566 + MER61D LTR ERV1 344 1297 -11 2490 248 59 8 chr12 19219070 19219933 -125062556 - L1MA9 LINE L1 -2610 4557 3651 1374 224 28 41 chr12 19219923 19220328 -125062161 + L1M2c LINE L1 2217 2618 -4171 * 1913 129 39 4 chr12 19220390 19220670 -125061819 + AluSx SINE Alu 1 290 -22 380 270 25 31 chr12 19220711 19220870 -125061619 - L1MA9 LINE L1 -3552 3615 3458 26 64 0 0 chr12 19220874 19220921 -125061568 + AT_rich Low_complexity Low_complexity 1 47 0 340 139 22 50 chr12 19220924 19221104 -125061385 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 * 485 94 54 13 chr12 19221075 19221224 -125061265 + (TA)n Simple_repeat Simple_repeat 1 155 0 444 194 38 14 chr12 19221224 19221577 -125060912 + (TATAA)n Simple_repeat Simple_repeat 1 361 0 936 264 30 0 chr12 19221577 19221842 -125060647 - L1MA9 LINE L1 -3693 3474 3202 9374 234 57 25 chr12 19221887 19224791 -125057698 - L1MA9 LINE L1 -4161 3007 1 21 0 0 0 chr12 19224838 19224859 -125057630 + AT_rich Low_complexity Low_complexity 1 21 0 535 338 0 0 chr12 19225296 19225447 -125057042 + MIR SINE MIR 7 157 -105 388 312 34 99 chr12 19225443 19225527 -125056962 - MIR SINE MIR 0 262 174 * 300 27 0 0 chr12 19225527 19225564 -125056925 + (CA)n Simple_repeat Simple_repeat 2 38 0 388 312 34 99 chr12 19225564 19225742 -125056747 - MIR SINE MIR -88 174 17 225 375 107 26 chr12 19225846 19226193 -125056296 + L2 LINE L2 2384 2758 -556 311 370 55 0 chr12 19226315 19226461 -125056028 + MIR3 SINE MIR 49 202 -6 261 0 0 0 chr12 19226680 19226709 -125055780 + (TA)n Simple_repeat Simple_repeat 1 29 0 2008 198 57 29 chr12 19227510 19227999 -125054490 + MLT1D LTR MaLR 1 503 -2 295 241 101 0 chr12 19228541 19228620 -125053869 + L2 LINE L2 3227 3313 0 22 0 0 0 chr12 19228632 19228654 -125053835 + AT_rich Low_complexity Low_complexity 1 22 0 2047 126 3 3 chr12 19232519 19232829 -125049660 - AluSx SINE Alu -2 310 1 21 82 0 0 chr12 19232882 19232931 -125049558 + AT_rich Low_complexity Low_complexity 1 49 0 230 304 59 29 chr12 19233340 19233442 -125049047 + L2 LINE L2 3208 3312 -1 191 254 109 0 chr12 19235078 19235133 -125047356 - MIR3 SINE MIR -8 200 140 321 246 108 109 chr12 19235202 19235514 -125046975 - L2 LINE L2 -529 2785 2403 2218 82 26 10 chr12 19235514 19235820 -125046669 + AluY SINE Alu 1 311 0 321 246 108 109 chr12 19235820 19235896 -125046593 - L2 LINE L2 -911 2403 2328 1151 317 53 9 chr12 19235897 19236348 -125046141 - L2 LINE L2 -1110 2204 1734 1197 207 91 12 chr12 19236360 19236679 -125045810 - L1MC3 LINE L1 -1 7784 7441 341 274 0 11 chr12 19236666 19236761 -125045728 - L1M4 LINE L1 -2442 3704 3611 * 25 0 0 0 chr12 19236767 19236792 -125045697 + AT_rich Low_complexity Low_complexity 1 25 0 226 290 16 0 chr12 19237037 19237099 -125045390 + MLT1H LTR MaLR 1 63 -486 770 307 4 8 chr12 19237101 19237339 -125045150 - L1MCb LINE L1 -5586 321 85 270 268 41 31 chr12 19237347 19237444 -125045045 - L1MCb LINE L1 -6310 116 19 679 307 107 46 chr12 19237449 19237646 -125044843 - L2 LINE L2 -1609 1705 1521 1462 209 67 34 chr12 19237646 19238092 -125044397 + MLT1C LTR MaLR 5 465 -2 679 307 107 46 chr12 19238092 19238373 -125044116 - L2 LINE L2 -1793 1521 1198 1148 273 133 28 chr12 19239464 19239893 -125042596 - MLT1H LTR MaLR -9 540 67 5516 181 48 47 chr12 19239893 19240269 -125042220 + L1M4c LINE L1 403 777 -5607 1994 146 10 0 chr12 19240269 19240578 -125041911 - AluSx SINE Alu 0 312 1 5516 181 48 47 chr12 19240578 19241610 -125040879 + L1M4c LINE L1 777 1812 -4572 533 249 22 52 chr12 19241610 19241814 -125040675 - MLT1D LTR MaLR -84 421 199 259 250 31 78 chr12 19242000 19242128 -125040361 - L1MA9 LINE L1 -287 6025 5904 24 53 0 0 chr12 19242251 19242289 -125040200 + AT_rich Low_complexity Low_complexity 1 38 0 424 251 30 68 chr12 19242305 19242540 -125039949 + L1ME LINE L1 5322 5547 -617 216 0 0 0 chr12 19243537 19243561 -125038928 + (T)n Simple_repeat Simple_repeat 1 24 0 29 0 0 0 chr12 19243706 19243735 -125038754 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr12 19244295 19244327 -125038162 + AT_rich Low_complexity Low_complexity 1 32 0 971 271 182 64 chr12 19344911 19345645 -124936844 - L2 LINE L2 -5 3308 2488 1080 218 40 40 chr12 19345646 19345894 -124936595 - MLT1E LTR MaLR 0 593 346 536 295 77 10 chr12 19345924 19346131 -124936358 - MLT1E LTR MaLR -371 222 2 2100 185 0 8 chr12 19346321 19346689 -124935800 - MLT1A1 LTR MaLR 0 365 1 583 209 67 8 chr12 19347011 19347145 -124935344 - LTR9 LTR ERV1 0 612 471 2334 185 23 70 chr12 19347148 19347704 -124934785 - LTR9 LTR ERV1 -82 530 1 1424 220 59 93 chr12 19349308 19349911 -124932578 + MLT1E2 LTR MaLR 2 613 -41 2007 111 0 11 chr12 19350594 19350873 -124931616 - AluSx SINE Alu -36 276 1 380 340 39 31 chr12 19350920 19351102 -124931387 + MIR SINE MIR 2 181 -81 2205 88 0 7 chr12 19351102 19351414 -124931075 + AluSg SINE Alu 3 312 0 380 340 39 31 chr12 19351414 19351432 -124931057 + MIR SINE MIR 181 197 -65 225 0 0 0 chr12 19351432 19351457 -124931032 + (TA)n Simple_repeat Simple_repeat 1 25 0 380 340 39 31 chr12 19351457 19351513 -124930976 + MIR SINE MIR 197 262 0 592 323 78 9 chr12 19351598 19351815 -124930674 + MIR SINE MIR 3 234 -28 588 263 48 88 chr12 19352065 19352442 -124930047 - L1ME4a LINE L1 -295 5826 5470 1246 198 34 0 chr12 19352456 19352693 -124929796 + MLT1A1 LTR MaLR 121 365 0 1398 165 106 30 chr12 19352693 19352996 -124929493 - MLT1D LTR MaLR -179 326 1 320 267 9 19 chr12 19354495 19354600 -124927889 - MIR3 SINE MIR -1 207 104 1255 192 54 11 chr12 19354993 19355253 -124927236 - MLT1A1 LTR MaLR -94 271 1 312 290 91 5 chr12 19355473 19355659 -124926830 - L1ME3A LINE L1 -219 5951 5750 329 290 80 0 chr12 19355659 19355797 -124926692 - L1MEd LINE L1 -3987 2553 2405 352 275 86 42 chr12 19356295 19356855 -124925634 - L1MEd LINE L1 -4602 1992 1380 180 217 0 0 chr12 19356855 19356901 -124925588 + (TG)n Simple_repeat Simple_repeat 2 47 0 389 250 38 85 chr12 19356935 19357171 -124925318 - L1MEd LINE L1 -5171 1359 1135 383 243 63 9 chr12 19358890 19359001 -124923488 + MER51D LTR ERV1 464 580 -77 22 0 0 0 chr12 19359603 19359625 -124922864 + AT_rich Low_complexity Low_complexity 1 22 0 243 304 101 7 chr12 19361272 19361410 -124921079 - MER103 DNA DNA -7 159 9 27 73 0 0 chr12 19361662 19361717 -124920772 + AT_rich Low_complexity Low_complexity 1 55 0 200 338 14 0 chr12 19362020 19362091 -124920398 + MIR SINE MIR 76 147 -115 204 165 25 152 chr12 19363235 19363314 -124919175 + L2 LINE L2 3156 3224 -89 2024 146 0 0 chr12 19363507 19363808 -124918681 - AluSx SINE Alu -11 301 1 23 33 0 0 chr12 19364542 19364572 -124917917 + AT_rich Low_complexity Low_complexity 1 30 0 367 354 99 14 chr12 19364892 19365115 -124917374 - MIR SINE MIR 0 262 21 324 0 0 0 chr12 19366182 19366218 -124916271 + (CA)n Simple_repeat Simple_repeat 2 37 0 204 292 175 25 chr12 19366741 19366861 -124915628 - L2 LINE L2 -1 3271 3134 428 366 130 27 chr12 19367047 19367708 -124914781 - L2 LINE L2 -341 2973 2245 1788 180 40 19 chr12 19367709 19368081 -124914408 - MLT1B LTR MaLR 0 390 11 196 329 43 0 chr12 19368114 19368184 -124914305 - MIR SINE MIR -109 153 81 634 116 32 0 chr12 19369504 19369599 -124912890 + AluJ/FLAM SINE Alu 1 98 -214 24 0 0 0 chr12 19369642 19369666 -124912823 + GC_rich Low_complexity Low_complexity 1 24 0 359 261 25 17 chr12 19369693 19369812 -124912677 + (TATG)n Simple_repeat Simple_repeat 3 122 0 593 202 17 6 chr12 19369816 19369994 -124912495 + (TA)n Simple_repeat Simple_repeat 1 180 0 470 306 91 39 chr12 19370187 19370419 -124912070 + MIR SINE MIR 4 247 -15 199 289 33 11 chr12 19370431 19370521 -124911968 - MIR3 SINE MIR -5 203 112 2488 183 35 27 chr12 19371339 19371750 -124910739 + MER66B LTR ERV1 1 418 -68 2347 99 0 10 chr12 19371750 19372062 -124910427 - AluSc SINE Alu 0 309 1 2488 183 35 27 chr12 19372062 19372132 -124910357 + MER66B LTR ERV1 418 486 0 575 261 119 20 chr12 19374315 19374568 -124907921 + MARNA DNA Mariner 146 423 -163 293 242 0 0 chr12 19374622 19374684 -124907805 - MLT1J2 LTR MaLR -28 422 361 457 238 64 91 chr12 19374748 19375027 -124907462 - MLT1I LTR MaLR -121 288 51 225 378 134 18 chr12 19376687 19376962 -124905527 + L3b LINE CR1 1276 1582 -1 21 36 0 0 chr12 19377348 19377376 -124905113 + AT_rich Low_complexity Low_complexity 1 28 0 351 0 0 0 chr12 19377924 19377963 -124904526 + (TG)n Simple_repeat Simple_repeat 2 40 0 282 322 141 17 chr12 19378594 19378771 -124903718 - MIR SINE MIR -44 218 20 1921 153 19 16 chr12 19381215 19381581 -124900908 - L1MA2 LINE L1 -155 6149 5783 202 273 0 45 chr12 19383777 19383843 -124898646 - L2 LINE L2 -28 3285 3223 237 98 0 0 chr12 19385214 19385255 -124897234 + (TG)n Simple_repeat Simple_repeat 2 42 0 203 351 59 17 chr12 19386457 19386629 -124895860 - MIR3 SINE MIR -33 229 1 21 36 0 0 chr12 19386647 19386675 -124895814 + AT_rich Low_complexity Low_complexity 1 28 0 209 348 22 39 chr12 19390542 19390723 -124891766 + MER5B DNA MER1_type 1 178 0 492 214 0 0 chr12 19390771 19390869 -124891620 + MER5A DNA MER1_type 9 106 -83 2905 156 57 31 chr12 19390926 19391712 -124890777 + pTR5 LTR ERV1 743 2021 -417 376 238 10 0 chr12 19391713 19391814 -124890675 + LTR30 LTR ERV1 541 642 -80 2175 107 3 0 chr12 19391814 19392133 -124890356 + pTR5 LTR ERV1 66 385 -2053 1789 151 20 29 chr12 19392134 19392478 -124890011 - THE1C LTR MaLR -31 344 4 600 279 35 23 chr12 19394954 19395126 -124887363 + MER91A DNA MER1_type 3 176 -20 403 270 56 0 chr12 19395128 19395217 -124887272 - MER81 DNA DNA -20 94 1 239 348 22 0 chr12 19395428 19395520 -124886969 - MIR SINE MIR -79 183 90 678 276 186 58 chr12 19396919 19397727 -124884762 - L2 LINE L2 -6 3307 2376 2199 117 3 0 chr12 19398060 19398368 -124884121 - AluSx SINE Alu -3 309 1 234 385 0 0 chr12 19398368 19398446 -124884043 - L2 LINE L2 -1 3271 3194 871 79 87 0 chr12 19399594 19399721 -124882768 + MER85 DNA T2_type 1 138 -1 21 0 0 0 chr12 19399982 19400003 -124882486 + AT_rich Low_complexity Low_complexity 1 21 0 2098 112 23 10 chr12 19400005 19400308 -124882181 - AluSx SINE Alu -3 309 3 1672 169 17 7 chr12 19400938 19401228 -124881261 - AluJb SINE Alu -19 293 1 197 65 32 0 chr12 19401650 19401681 -124880808 + (TTTTTG)n Simple_repeat Simple_repeat 1 32 0 12196 186 41 23 chr12 19401699 19405336 -124877153 - L1MA7 LINE L1 -2 6493 2791 7122 188 39 11 chr12 19405326 19406931 -124875558 - L1 LINE L1 -1603 5962 4313 * 2056 254 46 60 chr12 19406934 19408115 -124874374 - L1 LINE L1 -4415 3150 2175 19047 142 36 39 chr12 19408301 19410885 -124871604 - L1P3 LINE L1 -1599 4862 2191 567 71 0 41 chr12 19410885 19410983 -124871506 + SVA Other Other 1293 1386 0 19047 142 36 39 chr12 19410983 19411906 -124870583 - L1P3 LINE L1 -4270 2191 1267 6782 159 14 29 chr12 19411924 19413165 -124869324 - L1P3 LINE L1 -4743 1132 3 2805 286 58 34 chr12 19413172 19415438 -124867051 - L1MA7 LINE L1 -4244 2107 1 329 264 174 52 chr12 19415480 19415516 -124866973 + MIR SINE MIR 83 113 -149 2286 104 3 7 chr12 19415516 19415824 -124866665 - AluSq SINE Alu -6 307 1 329 264 174 52 chr12 19415824 19415942 -124866547 + MIR SINE MIR 113 256 -6 2055 128 0 7 chr12 19416066 19416362 -124866127 + AluSq SINE Alu 1 294 -19 895 215 23 56 chr12 19416520 19416734 -124865755 - MER63A DNA MER1_type 0 210 4 479 270 13 63 chr12 19419849 19420008 -124862481 - MIR SINE MIR -49 213 63 760 330 143 30 chr12 19420959 19421548 -124860941 + L2 LINE L2 1223 1953 -1361 1969 129 161 11 chr12 19421548 19421920 -124860569 + MSTA LTR MaLR 1 428 0 760 330 143 30 chr12 19421920 19422242 -124860247 + L2 LINE L2 1953 2237 -1077 4816 206 50 16 chr12 19422254 19423665 -124858824 - L1MD1 LINE L1 -1 6635 5156 1756 241 83 25 chr12 19423660 19424141 -124858348 - L1MD1 LINE L1 -6016 524 16 * 548 338 151 21 chr12 19424141 19424564 -124857925 + L2 LINE L2 2230 2707 -607 2113 144 0 0 chr12 19424895 19425207 -124857282 - AluSx SINE Alu 0 312 1 23 33 0 0 chr12 19426344 19426374 -124856115 + AT_rich Low_complexity Low_complexity 1 30 0 2213 33 7 4 chr12 19426804 19427075 -124855414 + L1PA4 LINE L1 5881 6152 -3 722 288 35 31 chr12 19427251 19427507 -124854982 - MIR SINE MIR 0 262 6 255 204 255 20 chr12 19427541 19427639 -124854850 - MIR SINE MIR -29 233 113 189 269 39 0 chr12 19427816 19427868 -124854621 + L2 LINE L2 3219 3272 0 180 377 0 0 chr12 19429571 19429648 -124852841 - MIR SINE MIR -27 235 159 412 308 93 17 chr12 19430081 19430253 -124852236 + MIR SINE MIR 14 198 -64 341 263 0 0 chr12 19430251 19430331 -124852158 - MIR SINE MIR -16 246 167 * 207 259 17 0 chr12 19430345 19430403 -124852086 + MIR SINE MIR 203 261 -1 865 222 35 5 chr12 19430429 19430627 -124851862 - MER3 DNA MER1_type -3 206 3 6390 81 3 0 chr12 19433364 19434753 -124847736 - L1PA14 LINE L1 -4 6157 4748 330 310 83 99 chr12 19434770 19435225 -124847264 - L2 LINE L2 0 3272 2825 239 271 0 0 chr12 19435737 19435796 -124846693 + L2 LINE L2 2187 2245 -1069 383 322 92 58 chr12 19435897 19436223 -124846266 + L2 LINE L2 2626 2962 -352 283 309 31 10 chr12 19436878 19436975 -124845514 - MIR SINE MIR -108 154 56 185 200 0 60 chr12 19437971 19438021 -124844468 + MIR SINE MIR 216 262 0 328 285 75 11 chr12 19438384 19438521 -124843968 - MIR3 SINE MIR -5 203 60 221 0 35 0 chr12 19438603 19438632 -124843857 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 506 274 24 18 chr12 19440339 19440507 -124841982 - MIR SINE MIR 0 262 94 294 313 53 27 chr12 19446776 19446926 -124835563 + MIR3 SINE MIR 18 171 -37 252 288 96 0 chr12 19446969 19447042 -124835447 + L2 LINE L2 3194 3273 -40 216 303 61 0 chr12 19447541 19447607 -124834882 + L2 LINE L2 3200 3269 -3 232 234 0 85 chr12 19447996 19448090 -124834399 + L1M4 LINE L1 3892 3977 -2169 583 263 108 20 chr12 19448351 19448602 -124833887 + L1M4 LINE L1 3871 4143 -2003 834 307 18 26 chr12 19448810 19449191 -124833298 + L1M4 LINE L1 4490 4867 -1279 271 192 0 0 chr12 19449324 19449376 -124833113 - L2 LINE L2 -1 3312 3261 751 286 147 39 chr12 19449456 19449943 -124832546 + L2 LINE L2 2753 3282 -31 205 250 0 0 chr12 19449954 19450006 -124832483 + (TG)n Simple_repeat Simple_repeat 1 52 0 432 0 0 0 chr12 19450735 19450783 -124831706 + (TA)n Simple_repeat Simple_repeat 1 48 0 387 0 0 0 chr12 19450782 19450825 -124831664 + (GA)n Simple_repeat Simple_repeat 2 44 0 * 1911 103 53 4 chr12 19450826 19451089 -124831400 - AluSq SINE Alu -37 276 1 610 339 44 7 chr12 19451697 19452110 -124830379 + HAL1b LINE L1 211 638 -710 859 227 0 0 chr12 19452288 19452451 -124830038 + FRAM SINE Alu 1 160 -16 21 0 0 0 chr12 19452781 19452802 -124829687 + AT_rich Low_complexity Low_complexity 1 21 0 325 301 70 19 chr12 19452816 19452972 -124829517 + L1MC4a LINE L1 5895 6058 -1750 2394 56 3 3 chr12 19453087 19453390 -124829099 - AluY SINE Alu -8 303 1 21 0 0 0 chr12 19454168 19454189 -124828300 + AT_rich Low_complexity Low_complexity 1 21 0 217 254 14 0 chr12 19454864 19454935 -124827554 + (TA)n Simple_repeat Simple_repeat 1 72 0 381 271 21 0 chr12 19456372 19456468 -124826021 + Charlie2 DNA MER1_type 228 325 -2537 916 261 95 35 chr12 19456469 19456894 -124825595 + Charlie2 DNA MER1_type 1855 2320 -542 218 81 27 0 chr12 19456894 19456931 -124825558 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 916 261 95 35 chr12 19456931 19457041 -124825448 + Charlie2 DNA MER1_type 2320 2422 -440 1637 186 7 11 chr12 19458078 19458357 -124824132 + AluJo SINE Alu 5 282 -30 191 304 128 20 chr12 19458393 19458495 -124823994 - L2 LINE L2 -1 3312 3200 182 325 39 0 chr12 19458584 19458661 -124823828 - L2 LINE L2 -225 3047 2968 1940 207 99 18 chr12 19458732 19459186 -124823303 - MLT1D LTR MaLR -13 492 2 1609 176 92 46 chr12 19459305 19459343 -124823146 - MLT2D LTR ERVL -4 410 375 345 24 0 0 chr12 19459343 19459385 -124823104 + (TG)n Simple_repeat Simple_repeat 1 42 0 1609 176 92 46 chr12 19459385 19459738 -124822751 - MLT2D LTR ERVL -39 375 1 615 266 113 81 chr12 19459950 19460390 -124822099 + MLT1G LTR MaLR 10 503 -46 229 307 0 85 chr12 19460399 19460417 -124822072 - L1MC/D LINE L1 -512 5832 5815 967 281 100 5 chr12 19460417 19461034 -124821455 - L1ME3A LINE L1 -343 5810 5106 254 108 0 0 chr12 19461119 19461156 -124821333 + MER54A LTR ERVL 102 138 -763 2140 108 7 3 chr12 19461173 19461468 -124821021 - AluSq SINE Alu -17 296 1 2193 234 18 0 chr12 19461487 19461928 -124820561 + MER54A LTR ERVL 453 901 0 1144 284 99 20 chr12 19462063 19463020 -124819469 - L1MEd LINE L1 -3193 2936 1937 301 225 34 28 chr12 19463239 19463417 -124819072 + (TA)n Simple_repeat Simple_repeat 2 180 0 648 304 36 18 chr12 19463482 19464083 -124818406 - L1MEd LINE L1 -4862 1257 700 562 272 27 22 chr12 19466170 19466354 -124816135 + MER5A DNA MER1_type 2 186 -3 317 336 27 20 chr12 19466561 19466707 -124815782 - L2 LINE L2 -183 3089 2943 205 147 0 0 chr12 19468896 19468930 -124813559 - L2 LINE L2 -2 3311 3278 236 316 64 59 chr12 19468947 19469134 -124813355 + MER5A DNA MER1_type 1 188 -1 31 26 0 0 chr12 19469997 19470035 -124812454 + AT_rich Low_complexity Low_complexity 1 38 0 204 143 0 0 chr12 19470484 19470526 -124811963 + (TC)n Simple_repeat Simple_repeat 1 42 0 2427 79 0 0 chr12 19470812 19471104 -124811385 + AluSc SINE Alu 2 293 -16 1555 276 76 11 chr12 19472515 19473055 -124809434 - L2 LINE L2 -865 2449 1875 17916 208 54 20 chr12 19473064 19474978 -124807511 + L1PA14 LINE L1 6 1855 -5744 2099 93 43 20 chr12 19474978 19475279 -124807210 - AluY SINE Alu -3 308 1 17916 208 54 20 chr12 19475279 19478703 -124803786 + L1PA14 LINE L1 1855 6167 -1432 291 28 0 0 chr12 19478703 19478739 -124803750 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 17916 208 54 20 chr12 19478739 19480101 -124802388 + L1PA14 LINE L1 6167 7482 -117 261 102 85 68 chr12 19480099 19480158 -124802331 + L1PA15 LINE L1 6104 6163 -2 * 23 54 0 0 chr12 19480197 19480234 -124802255 + AT_rich Low_complexity Low_complexity 1 37 0 455 246 152 11 chr12 19480241 19480432 -124802057 - L2 LINE L2 -1428 1886 1669 468 354 13 18 chr12 19480439 19480665 -124801824 - L2 LINE L2 -2708 606 382 280 309 32 16 chr12 19481137 19481263 -124801226 - MER20B DNA MER1_type -613 170 43 344 182 68 0 chr12 19481277 19481365 -124801124 - MER53 DNA DNA 0 189 96 341 211 53 0 chr12 19481430 19481506 -124800983 - MER91C DNA MER1_type -60 80 1 402 343 108 66 chr12 19482567 19483840 -124798649 - L2 LINE L2 -456 2858 1533 1666 176 14 100 chr12 19483840 19484261 -124798228 - MLT1B LTR MaLR -5 385 1 191 297 192 11 chr12 19484315 19484497 -124797992 - L2 LINE L2 -1855 1459 1245 1529 250 77 52 chr12 19484896 19485091 -124797398 + L1MDa LINE L1 1564 1753 -4968 2077 116 3 49 chr12 19485091 19485418 -124797071 + AluSp SINE Alu 1 312 -1 1529 250 77 52 chr12 19485418 19486112 -124796377 + L1MDa LINE L1 1753 2512 -4209 1181 73 0 11 chr12 19486230 19486409 -124796080 + (TTTCC)n Simple_repeat Simple_repeat 2 178 0 2077 119 3 0 chr12 19486425 19486719 -124795770 - AluSp SINE Alu -17 296 2 2933 169 94 13 chr12 19486728 19487537 -124794952 + MER41-int LTR ERV1 528 1489 -4457 1687 84 5 0 chr12 19487639 19487854 -124794635 - AluSp SINE Alu -97 216 1 1302 213 115 25 chr12 19487867 19488224 -124794265 + MLT1D LTR MaLR 117 505 0 531 234 101 43 chr12 19488266 19488475 -124794014 + L1MEc LINE L1 4 224 -6172 608 199 144 30 chr12 19488871 19489072 -124793417 + MER2 DNA MER2_type 122 345 0 2037 257 36 16 chr12 19489128 19489814 -124792675 - L1M4 LINE L1 -2211 3935 3236 801 261 13 4 chr12 19489862 19490100 -124792389 - L1M4 LINE L1 -3316 2830 2591 482 233 29 0 chr12 19490307 19490410 -124792079 + MER5A DNA MER1_type 84 189 0 474 221 39 94 chr12 19490879 19491060 -124791429 + L1ME LINE L1 5512 5682 -439 3361 49 11 16 chr12 19491547 19491998 -124790491 + L1PA8 LINE L1 5724 6172 0 267 292 108 15 chr12 19492002 19492132 -124790357 - L2 LINE L2 -389 2925 2784 801 302 59 59 chr12 19492206 19492765 -124789724 - L2 LINE L2 -509 2805 2247 2252 79 3 10 chr12 19492866 19493170 -124789319 - MLT2A1 LTR ERVL -142 302 1 180 200 0 0 chr12 19493519 19493564 -124788925 + (CAT)n Simple_repeat Simple_repeat 2 46 0 969 238 111 49 chr12 19493564 19493908 -124788581 + MLT1A1 LTR MaLR 1 365 0 345 319 72 0 chr12 19493924 19494062 -124788427 - MIR SINE MIR -40 222 75 316 352 38 19 chr12 19494108 19494267 -124788222 - MIR3 SINE MIR -24 184 23 917 230 0 0 chr12 19496196 19496374 -124786115 + MER45A DNA AcHobo 1 178 0 403 278 154 12 chr12 19496452 19496621 -124785868 + L2 LINE L2 3119 3311 -2 21 0 0 0 chr12 19497011 19497032 -124785457 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 19497943 19497972 -124784517 + AT_rich Low_complexity Low_complexity 1 29 0 10874 25 1 0 chr12 19498133 19500180 -124782309 + L1PA3 LINE L1 4099 6147 -8 227 29 57 0 chr12 19500198 19500233 -124782256 + (TAAAAA)n Simple_repeat Simple_repeat 4 40 0 518 325 94 32 chr12 19500626 19501253 -124781236 + L1 LINE L1 2676 3412 -2734 515 256 82 54 chr12 19501365 19501822 -124780667 + L1 LINE L1 3520 3983 -2163 * 1885 119 3 22 chr12 19501813 19502125 -124780364 + L1MA5A LINE L1 5813 6118 -179 492 167 0 0 chr12 19502129 19502213 -124780276 - L1P LINE L1 -1561 4585 4502 * 592 164 79 29 chr12 19502212 19502352 -124780137 + L1 LINE L1 4598 4744 -1402 2198 223 86 12 chr12 19502357 19503029 -124779460 + L1PBa LINE L1 321 1042 -5821 8453 181 31 2 chr12 19503037 19506144 -124776345 + L1PBa LINE L1 1094 4440 -2422 21 0 0 0 chr12 19506150 19506171 -124776318 + AT_rich Low_complexity Low_complexity 1 21 0 503 281 152 23 chr12 19506350 19506567 -124775922 + MIR SINE MIR 5 249 -13 23 33 0 0 chr12 19507396 19507426 -124775063 + AT_rich Low_complexity Low_complexity 1 30 0 7468 25 2 10 chr12 19507835 19509244 -124773245 + L1PA4 LINE L1 4750 6152 -3 321 301 219 15 chr12 19509530 19509726 -124772763 - MIR SINE MIR -17 245 10 782 322 23 29 chr12 19511350 19511698 -124770791 + MARNA DNA Mariner 60 405 -181 2744 279 52 23 chr12 19511882 19512913 -124769576 + L2 LINE L2 2068 3119 -194 283 275 0 25 chr12 19512925 19513005 -124769484 + L2 LINE L2 3236 3313 0 281 291 55 36 chr12 19514051 19514161 -124768328 - MER5A DNA MER1_type -15 174 63 336 309 69 29 chr12 19515196 19515400 -124767089 + L2 LINE L2 2169 2380 -934 180 0 0 0 chr12 19515481 19515501 -124766988 + (TTTTC)n Simple_repeat Simple_repeat 2 21 0 2285 141 3 5 chr12 19515502 19515856 -124766633 - L1PB1 LINE L1 -5 6146 5792 393 22 0 0 chr12 19515856 19515902 -124766587 + (TG)n Simple_repeat Simple_repeat 2 47 0 2285 141 3 5 chr12 19515902 19515917 -124766572 - L1PB1 LINE L1 -359 5792 5778 1216 104 38 0 chr12 19515971 19516154 -124766335 - L1PB1 LINE L1 -361 5790 5601 21 0 0 0 chr12 19517433 19517454 -124765035 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr12 19518507 19518544 -124763945 + AT_rich Low_complexity Low_complexity 1 37 0 1231 271 136 44 chr12 19518723 19519926 -124762563 + L1ME LINE L1 239 1528 -4552 1776 272 58 14 chr12 19519953 19520267 -124762222 - L1M4 LINE L1 -3057 3089 2790 2178 67 60 0 chr12 19520267 19520549 -124761940 - AluY SINE Alu -12 299 1 1776 272 58 14 chr12 19520549 19521019 -124761470 - L1M4 LINE L1 -3356 2790 2233 468 111 0 0 chr12 19521026 19521098 -124761391 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 405 319 69 81 chr12 19521141 19521461 -124761028 - L3 LINE CR1 -638 939 624 235 217 65 0 chr12 19522044 19522136 -124760353 + (TA)n Simple_repeat Simple_repeat 1 98 0 14864 223 33 16 chr12 19522454 19528060 -124754429 - L1MA7 LINE L1 -11 7699 2023 382 173 37 25 chr12 19528060 19528141 -124754348 - L1MA7 LINE L1 -5873 1613 1532 597 214 43 0 chr12 19529341 19529458 -124753031 + FLAM_A SINE Alu 2 123 -10 25 31 0 0 chr12 19529465 19529497 -124752992 + AT_rich Low_complexity Low_complexity 1 32 0 185 309 73 0 chr12 19530523 19530578 -124751911 - L2 LINE L2 0 3313 3255 1682 167 73 3 chr12 19530654 19530942 -124751547 + AluSx SINE Alu 1 308 -4 284 313 18 9 chr12 19531771 19531883 -124750606 + Tigger1 DNA MER2_type 1040 1152 -1266 239 307 121 18 chr12 19532318 19532484 -124750005 - L2 LINE L2 -911 2403 2221 985 212 13 44 chr12 19532484 19532710 -124749779 + MER20 DNA MER1_type 1 219 0 447 212 126 13 chr12 19532795 19532946 -124749543 - MIR SINE MIR 0 262 95 258 94 94 62 chr12 19532946 19533010 -124749479 - MLT2B1 LTR ERVL 0 520 455 1645 200 105 64 chr12 19533051 19533507 -124748982 - MLT2B1 LTR ERVL -44 476 2 27054 165 49 48 chr12 19533508 19536751 -124745738 - ERVL-B1 LTR ERVL -7 5757 2506 2048 91 11 4 chr12 19536751 19537052 -124745437 - AluSp SINE Alu 0 307 5 27054 165 49 48 chr12 19537052 19539173 -124743316 - ERVL-B1 LTR ERVL -3258 2506 388 496 170 0 0 chr12 19539178 19539272 -124743217 - MLT2B2 LTR ERVL -421 94 1 225 383 21 0 chr12 19539272 19539366 -124743123 - MIR SINE MIR -163 99 4 189 0 0 0 chr12 19539479 19539500 -124742989 + (A)n Simple_repeat Simple_repeat 1 21 0 24 53 0 0 chr12 19539677 19539715 -124742774 + AT_rich Low_complexity Low_complexity 1 38 0 43 56 0 0 chr12 19540466 19540537 -124741952 + AT_rich Low_complexity Low_complexity 1 71 0 2072 131 3 10 chr12 19542271 19542576 -124739913 - AluSq SINE Alu -10 303 1 1077 248 3 10 chr12 19542657 19542956 -124739533 - L1M4 LINE L1 -1014 5132 4836 390 21 0 0 chr12 19543314 19543361 -124739128 + (TG)n Simple_repeat Simple_repeat 2 48 0 188 224 41 61 chr12 19545109 19545158 -124737331 + L2 LINE L2 3214 3261 -11 201 275 159 43 chr12 19545170 19545308 -124737181 - MIR SINE MIR -108 154 1 396 252 79 0 chr12 19546179 19546306 -124736183 - MIR SINE MIR -13 249 113 288 385 82 0 chr12 19546450 19546632 -124735857 - L2 LINE L2 -1899 1415 1219 353 238 171 38 chr12 19547462 19547672 -124734817 + L1ME4a LINE L1 5879 6116 -5 953 196 28 14 chr12 19547786 19548000 -124734489 + L1PA16 LINE L1 5950 6166 0 258 200 0 0 chr12 19548050 19548105 -124734384 - L1MA1 LINE L1 0 6302 6248 27 29 0 0 chr12 19548809 19548843 -124733646 + AT_rich Low_complexity Low_complexity 1 34 0 3563 239 42 157 chr12 19549567 19550824 -124731665 + L2 LINE L2 1200 2600 -713 279 0 0 0 chr12 19550824 19550855 -124731634 + (TC)n Simple_repeat Simple_repeat 2 32 0 3563 239 42 157 chr12 19550855 19550872 -124731617 + L2 LINE L2 2600 2617 -696 213 65 0 0 chr12 19550872 19550903 -124731586 + (TG)n Simple_repeat Simple_repeat 2 32 0 3563 239 42 157 chr12 19550903 19551173 -124731316 + L2 LINE L2 2617 2916 -397 441 0 0 0 chr12 19551173 19551222 -124731267 + (TG)n Simple_repeat Simple_repeat 2 50 0 3563 239 42 157 chr12 19551222 19551986 -124730503 + L2 LINE L2 2916 3240 -73 238 333 0 0 chr12 19551996 19552053 -124730436 + Zaphod DNA AcHobo 11 67 -3964 1218 320 75 33 chr12 19552078 19552550 -124729939 + MER115 DNA AcHobo 144 641 -52 2017 189 26 75 chr12 19552550 19553041 -124729448 + MLT1C LTR MaLR 1 467 0 1218 320 75 33 chr12 19553041 19553086 -124729403 + MER115 DNA AcHobo 641 683 -10 204 40 0 0 chr12 19553402 19553427 -124729062 + (GA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr12 19554258 19554286 -124728203 + AT_rich Low_complexity Low_complexity 1 28 0 3762 175 50 25 chr12 19555751 19556534 -124725955 + L1MC3 LINE L1 6884 7685 -100 5239 235 51 37 chr12 19556543 19556611 -124725878 + L1M4 LINE L1 2 68 -6578 1588 168 3 54 chr12 19556611 19556759 -124725730 + AluJo SINE Alu 2 156 -161 2066 110 34 0 chr12 19556759 19557051 -124725438 + AluSg1 SINE Alu 1 302 -7 1588 168 3 54 chr12 19557051 19557233 -124725256 + AluJo SINE Alu 156 317 0 5239 235 51 37 chr12 19557233 19559065 -124723424 + L1M4 LINE L1 68 1919 -4727 22 56 0 0 chr12 19559065 19559101 -124723388 + AT_rich Low_complexity Low_complexity 1 36 0 392 313 33 0 chr12 19559671 19559821 -124722668 - MIR SINE MIR -38 224 70 903 264 81 3 chr12 19559835 19560130 -124722359 - L1MC4 LINE L1 -141 7901 7584 1026 63 0 14 chr12 19560133 19560275 -124722214 - L1PA4 LINE L1 0 6155 6016 600 263 35 6 chr12 19560275 19560446 -124722043 + L1M4 LINE L1 1907 2082 -4564 7281 178 83 14 chr12 19560447 19561996 -124720493 + L1MB3 LINE L1 4 1658 -4726 4119 111 57 71 chr12 19561994 19562784 -124719705 + L1PA15 LINE L1 5374 6152 -13 * 2776 156 152 29 chr12 19562822 19563532 -124718957 + L1PA15-16 LINE L1 1645 2426 -3958 1450 212 17 3 chr12 19563520 19563822 -124718667 + L1MB3 LINE L1 4205 4510 -1872 * 1281 180 14 0 chr12 19563830 19564047 -124718442 - MER2 DNA MER2_type -124 221 2 3751 180 13 31 chr12 19564051 19565073 -124717416 + L1MB3 LINE L1 5216 6219 -200 4780 35 0 0 chr12 19565073 19565637 -124716852 + L1PA3 LINE L1 5591 6154 -1 23 0 0 0 chr12 19565637 19565660 -124716829 + AT_rich Low_complexity Low_complexity 1 23 0 1049 174 14 14 chr12 19565666 19565884 -124716605 + L1MB3 LINE L1 6202 6419 0 23 54 0 0 chr12 19565941 19565978 -124716511 + AT_rich Low_complexity Low_complexity 1 37 0 1085 103 0 81 chr12 19565978 19566124 -124716365 + AluSp SINE Alu 1 132 -181 2126 106 3 7 chr12 19566124 19566417 -124716072 + AluSc SINE Alu 3 294 -15 1085 103 0 81 chr12 19566417 19566444 -124716045 + AluSp SINE Alu 132 160 -153 1951 232 77 7 chr12 19566445 19567278 -124715211 + L1M4c LINE L1 2080 2976 -3406 411 208 40 0 chr12 19567279 19567380 -124715109 + L1MC3 LINE L1 7679 7783 -2 275 347 148 14 chr12 19568097 19568313 -124714176 - MIR SINE MIR -10 252 8 553 235 81 81 chr12 19569499 19569759 -124712730 - MIR SINE MIR 0 262 3 219 267 156 22 chr12 19569791 19569881 -124712608 - MIR SINE MIR -25 237 136 1653 152 49 85 chr12 19569922 19570131 -124712358 - MLT1A2 LTR MaLR 0 374 184 2134 95 3 43 chr12 19570131 19570435 -124712054 - AluSg SINE Alu -18 292 1 1653 152 49 85 chr12 19570435 19570613 -124711876 - MLT1A2 LTR MaLR -190 184 1 195 129 0 0 chr12 19570749 19570780 -124711709 + (CA)n Simple_repeat Simple_repeat 2 32 0 256 216 114 34 chr12 19570846 19570934 -124711555 - MIR3 SINE MIR -23 185 91 403 286 53 41 chr12 19570951 19571122 -124711367 + MIR SINE MIR 79 251 -11 213 121 0 0 chr12 19571125 19571158 -124711331 + (TTA)n Simple_repeat Simple_repeat 3 35 0 1949 123 13 38 chr12 19571368 19571684 -124710805 + AluSg SINE Alu 1 308 -2 534 258 108 0 chr12 19571978 19572145 -124710344 - MER3 DNA MER1_type -8 201 17 1747 194 34 8 chr12 19572219 19572575 -124709914 - MLT1A1 LTR MaLR 0 365 1 561 284 63 29 chr12 19573154 19573393 -124709096 - LTR33 LTR ERVL -274 247 1 1628 230 148 27 chr12 19574032 19574559 -124707930 - MLT1E LTR MaLR -2 591 1 346 294 96 11 chr12 19574786 19574963 -124707526 + L2 LINE L2 3122 3313 0 508 288 69 42 chr12 19575094 19575474 -124707015 + MLT1H1 LTR MaLR 1 364 -178 613 245 0 20 chr12 19575487 19575638 -124706851 + MER3 DNA MER1_type 30 130 -79 3335 173 25 9 chr12 19575834 19576487 -124706002 + L1PB4 LINE L1 5490 6152 -4 392 343 30 34 chr12 19576586 19576819 -124705670 + MLT1K LTR MaLR 345 576 -12 681 251 30 6 chr12 19577872 19578039 -124704450 - MER5A DNA MER1_type 0 189 19 557 265 26 20 chr12 19578065 19578216 -124704273 + MER5B DNA MER1_type 27 178 0 245 254 16 0 chr12 19578353 19578416 -124704073 + (TG)n Simple_repeat Simple_repeat 1 64 0 2816 230 82 20 chr12 19578817 19579975 -124702514 - L1ME1 LINE L1 -5 6161 4934 2534 214 54 9 chr12 19581138 19581694 -124700795 - MER90 LTR ERV1 -11 603 23 233 365 0 0 chr12 19581720 19581794 -124700695 - L2 LINE L2 -194 3078 3005 21 0 0 0 chr12 19582125 19582146 -124700343 + AT_rich Low_complexity Low_complexity 1 21 0 630 221 147 30 chr12 19584902 19585133 -124697356 - MIR SINE MIR 0 262 5 1737 154 81 31 chr12 19585218 19585575 -124696914 + THE1C LTR MaLR 1 375 0 333 68 0 0 chr12 19586298 19586342 -124696147 + (CA)n Simple_repeat Simple_repeat 1 44 0 210 233 17 33 chr12 19587285 19587345 -124695144 + L2 LINE L2 3214 3272 0 27 62 0 0 chr12 19588142 19588190 -124694299 + AT_rich Low_complexity Low_complexity 1 48 0 185 174 0 22 chr12 19589418 19589464 -124693025 + GA-rich Low_complexity Low_complexity 3 47 0 1557 70 74 5 chr12 19589810 19590025 -124692464 - MER30 DNA MER1_type 0 230 1 227 331 113 73 chr12 19590594 19590672 -124691817 - L2 LINE L2 0 3272 3199 1965 141 0 3 chr12 19590672 19590992 -124691497 - AluSq SINE Alu 0 319 1 227 331 113 73 chr12 19590992 19591063 -124691426 - L2 LINE L2 -73 3199 3116 402 361 65 31 chr12 19591439 19591794 -124690695 - L2 LINE L2 -616 2698 2332 250 330 33 22 chr12 19595063 19595245 -124687244 + HAL1b LINE L1 407 590 -758 266 0 0 29 chr12 19596790 19596825 -124685664 + (TA)n Simple_repeat Simple_repeat 1 34 0 323 261 94 39 chr12 19597499 19597679 -124684810 - L3 LINE CR1 -277 1300 1111 272 308 125 8 chr12 19597876 19597996 -124684493 + MIR3 SINE MIR 74 207 -1 250 239 14 14 chr12 19598592 19598663 -124683826 + MER112 DNA MER1_type 9 79 -181 720 103 0 0 chr12 19598712 19598819 -124683670 + (CTATT)n Simple_repeat Simple_repeat 4 110 0 1724 113 49 0 chr12 19599110 19599394 -124683095 - L1MA3 LINE L1 -1 6304 6007 477 286 138 61 chr12 19600898 19601275 -124681214 + MLT1K LTR MaLR 162 567 -21 2165 120 0 7 chr12 19601454 19601754 -124680735 - AluSx SINE Alu -14 298 1 423 0 0 0 chr12 19602093 19602140 -124680349 + (TCC)n Simple_repeat Simple_repeat 2 48 0 240 341 87 24 chr12 19603150 19603276 -124679213 + MER5A DNA MER1_type 37 170 -19 1212 68 0 0 chr12 19603305 19603451 -124679038 - AluSg/x SINE Alu -10 302 157 408 315 119 31 chr12 19603509 19603852 -124678637 - Tigger8 DNA MER2_type -35 631 258 367 218 0 13 chr12 19603852 19603930 -124678559 + LTR24B LTR ERV1 1 77 -499 544 315 47 36 chr12 19603992 19604351 -124678138 + LTR24B LTR ERV1 207 569 -7 364 330 98 40 chr12 19604503 19604814 -124677675 - L2 LINE L2 -1211 2103 1757 1986 124 0 13 chr12 19604814 19605113 -124677376 - AluSq SINE Alu -18 295 1 364 330 98 40 chr12 19605113 19605249 -124677240 - L2 LINE L2 -1557 1757 1630 21 0 0 0 chr12 19605446 19605467 -124677022 + AT_rich Low_complexity Low_complexity 1 21 0 2079 129 0 0 chr12 19606070 19606357 -124676132 + AluSx SINE Alu 1 287 -25 313 252 93 66 chr12 19606372 19606434 -124676055 + L1MC4a LINE L1 5766 5825 -1983 2236 99 3 19 chr12 19606434 19606746 -124675743 + AluSx SINE Alu 4 310 -2 313 252 93 66 chr12 19606746 19606834 -124675655 + L1MC4a LINE L1 5825 5920 -1888 1666 234 80 28 chr12 19607281 19607746 -124674743 - MLT1D LTR MaLR -12 493 5 5546 192 21 35 chr12 19608370 19610087 -124672402 - L1MA9 LINE L1 -38 6274 4600 532 281 0 0 chr12 19610087 19610215 -124672274 + FLAM_C SINE Alu 2 129 -4 5546 192 21 35 chr12 19610215 19610671 -124671818 - L1MA9 LINE L1 -1712 4600 4139 2046 279 100 19 chr12 19610772 19611219 -124671270 - L2 LINE L2 -301 3012 2495 6641 36 0 0 chr12 19611219 19612047 -124670442 + L1PA4 LINE L1 5341 6168 0 2046 279 100 19 chr12 19612047 19612340 -124670149 - L2 LINE L2 -818 2495 2227 21 57 0 0 chr12 19612450 19612485 -124670004 + AT_rich Low_complexity Low_complexity 1 35 0 247 222 0 0 chr12 19613183 19613228 -124669261 + MER112 DNA MER1_type 203 247 -13 1029 179 42 24 chr12 19615160 19615372 -124667117 + MER20 DNA MER1_type 4 219 0 318 50 0 0 chr12 19615671 19615711 -124666778 + (GA)n Simple_repeat Simple_repeat 1 40 0 1767 60 5 0 chr12 19615886 19616104 -124666385 - AluY SINE Alu -10 301 83 428 246 37 52 chr12 19616114 19616286 -124666203 - FLAM_A SINE Alu 0 171 2 188 307 40 0 chr12 19617385 19617460 -124665029 - MIR SINE MIR -104 158 81 21 104 0 0 chr12 19617670 19617747 -124664742 + AT_rich Low_complexity Low_complexity 1 77 0 1095 314 103 35 chr12 19617915 19618286 -124664203 + L2 LINE L2 2155 2499 -815 1917 172 52 75 chr12 19618286 19618711 -124663778 + MER47B DNA MER2_type 4 418 0 1095 314 103 35 chr12 19618711 19619087 -124663402 + L2 LINE L2 2499 2953 -361 24 53 0 0 chr12 19619878 19619916 -124662573 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 19620120 19620141 -124662348 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 19620322 19620345 -124662144 + AT_rich Low_complexity Low_complexity 1 23 0 1925 251 39 20 chr12 19620363 19620938 -124661551 - L1ME3A LINE L1 -23 6147 5564 368 221 229 16 chr12 19620965 19621087 -124661402 + MIR SINE MIR 21 168 -94 429 281 165 0 chr12 19621186 19621428 -124661061 + L1ME4a LINE L1 5616 5897 -224 197 254 73 0 chr12 19622099 19622154 -124660335 + MER5C DNA MER1_type 31 89 -235 403 311 145 31 chr12 19622333 19622884 -124659605 + L2 LINE L2 2701 3309 -4 229 295 67 0 chr12 19623201 19623306 -124659183 + Tigger8 DNA MER2_type 379 490 -176 229 259 0 0 chr12 19625868 19625922 -124656567 - MIR SINE MIR -132 130 77 244 319 94 51 chr12 19626276 19626414 -124656075 + L2 LINE L2 2946 3089 -183 187 286 89 0 chr12 19626498 19626554 -124655935 + L2 LINE L2 3212 3272 -41 228 313 134 9 chr12 19626917 19627029 -124655460 + L2 LINE L2 3186 3311 -2 1532 194 7 14 chr12 19627550 19627834 -124654655 + AluJo SINE Alu 1 282 -30 27 29 0 0 chr12 19627834 19627868 -124654621 + AT_rich Low_complexity Low_complexity 1 34 0 302 358 102 47 chr12 19628045 19628660 -124653829 - L2 LINE L2 -406 2908 2260 205 330 156 27 chr12 19628660 19628884 -124653605 + MIR SINE MIR 1 253 -9 569 305 37 5 chr12 19630455 19630645 -124651844 - MIR SINE MIR -11 251 56 29 0 0 0 chr12 19631036 19631065 -124651424 + AT_rich Low_complexity Low_complexity 1 29 0 1637 252 51 43 chr12 19631629 19632137 -124650352 + LTR40a LTR ERVL 1 512 -7 9364 191 38 30 chr12 19632479 19632659 -124649830 - L1MA10 LINE L1 -1 6333 6156 1630 173 4 4 chr12 19632659 19632936 -124649553 - AluJb SINE Alu -33 279 3 9364 191 38 30 chr12 19632936 19634823 -124647666 - L1MA10 LINE L1 -178 6156 4287 264 30 0 0 chr12 19634823 19634856 -124647633 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2090 108 0 0 chr12 19634860 19635137 -124647352 - AluSx SINE Alu -35 277 1 9364 191 38 30 chr12 19635137 19635911 -124646578 - L1MA10 LINE L1 -2049 4285 3454 660 217 0 0 chr12 19635911 19636026 -124646463 - FLAM_C SINE Alu -18 115 1 9364 191 38 30 chr12 19636026 19636385 -124646104 - L1MA10 LINE L1 -2880 3454 3100 34 84 0 0 chr12 19636913 19636996 -124645493 + AT_rich Low_complexity Low_complexity 1 83 0 202 333 101 14 chr12 19637175 19637313 -124645176 + MIR SINE MIR 100 249 -13 357 62 0 0 chr12 19639955 19640003 -124642486 + (TG)n Simple_repeat Simple_repeat 1 48 0 252 0 0 0 chr12 19640002 19640030 -124642459 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 191 289 184 9 chr12 19640372 19640486 -124642003 - MIR SINE MIR -10 252 119 1792 210 22 0 chr12 19640519 19640876 -124641613 - MLT1A1 LTR MaLR 0 365 1 434 217 126 42 chr12 19641346 19641489 -124641000 - MER5A DNA MER1_type -28 161 7 777 276 68 19 chr12 19641992 19642362 -124640127 - L1ME4a LINE L1 -216 5905 5518 333 103 26 39 chr12 19642580 19642658 -124639831 + CT-rich Low_complexity Low_complexity 1 77 0 260 210 12 0 chr12 19642657 19642738 -124639751 + (CA)n Simple_repeat Simple_repeat 1 82 0 * 215 298 184 35 chr12 19642789 19642903 -124639586 + L2 LINE L2 3183 3313 0 192 355 154 5 chr12 19643873 19644093 -124638396 + L2 LINE L2 1317 1569 -1745 1337 169 13 17 chr12 19644137 19644409 -124638080 - AluJb SINE Alu 0 324 54 377 283 9 9 chr12 19644420 19644526 -124637963 - MIR SINE MIR -155 107 2 1677 169 34 9 chr12 19644801 19645150 -124637339 - L1MA10 LINE L1 -1 6333 5976 3935 111 31 5 chr12 19645367 19645972 -124636517 + L1PA15 LINE L1 5543 6163 -2 2299 109 0 0 chr12 19646427 19646739 -124635750 - AluSx SINE Alu 0 312 1 812 160 0 0 chr12 19646857 19646988 -124635501 - FLAM_C SINE Alu -2 131 1 343 306 21 49 chr12 19647078 19647222 -124635267 + MIR SINE MIR 7 146 -116 208 338 15 0 chr12 19647282 19647350 -124635139 + L2 LINE L2 3204 3272 0 327 276 230 11 chr12 19647685 19647859 -124634630 - LTR33 LTR ERVL -6 515 304 506 280 85 20 chr12 19647935 19648135 -124634354 - LTR33 LTR ERVL -306 215 3 532 282 107 32 chr12 19649748 19649965 -124632524 + L1ME LINE L1 5268 5467 -703 303 28 0 0 chr12 19649965 19650001 -124632488 + (TG)n Simple_repeat Simple_repeat 2 37 0 532 282 107 32 chr12 19650001 19650184 -124632305 + L1ME LINE L1 5467 5707 -463 200 313 7 33 chr12 19650478 19650628 -124631861 + A-rich Low_complexity Low_complexity 3 148 0 300 370 82 27 chr12 19652872 19653091 -124629398 - L2 LINE L2 0 3272 3042 405 304 0 9 chr12 19653204 19653319 -124629170 + LTR16A LTR ERVL 212 325 -125 741 163 98 49 chr12 19653327 19653511 -124628978 - MER58C DNA MER1_type -1 214 22 355 300 10 0 chr12 19653532 19653632 -124628857 + LTR16A LTR ERVL 338 438 -12 560 195 102 68 chr12 19653694 19653971 -124628518 + MER92B LTR ERV1 10 355 -199 416 91 91 0 chr12 19653971 19654035 -124628454 + MER41B LTR ERV1 1 70 -565 498 244 96 67 chr12 19654035 19654170 -124628319 - LTR28 LTR ERV1 0 1020 688 1489 225 67 114 chr12 19654235 19655017 -124627472 - LTR1B LTR ERV1 -81 745 1 3967 90 32 12 chr12 19655017 19655575 -124626914 + MER41B LTR ERV1 67 635 0 485 216 28 128 chr12 19655584 19655802 -124626687 + MER92C LTR ERV1 357 552 -2 3201 218 155 28 chr12 19656185 19657601 -124624888 - Charlie2a DNA MER1_type -38 2824 1228 867 236 73 9 chr12 19657644 19657971 -124624518 - Charlie2a DNA MER1_type -1767 1095 748 8068 146 47 1 chr12 19658015 19658149 -124624340 + Tigger1 DNA MER2_type 85 211 -2207 1922 122 7 46 chr12 19658149 19658453 -124624036 - AluSx SINE Alu -19 293 2 8068 146 47 1 chr12 19658453 19659659 -124622830 + Tigger1 DNA MER2_type 211 1487 -931 956 152 0 0 chr12 19659659 19659804 -124622685 - AluJb SINE Alu -167 145 1 34 0 0 0 chr12 19659995 19660029 -124622460 + AT_rich Low_complexity Low_complexity 1 34 0 2050 165 31 0 chr12 19660047 19660399 -124622090 - MER47A DNA MER2_type -1 365 3 22 70 0 0 chr12 19660457 19660500 -124621989 + AT_rich Low_complexity Low_complexity 1 43 0 30417 110 25 56 chr12 19661150 19667496 -124614993 + L1PA7 LINE L1 12 6151 -3 312 291 102 16 chr12 19668354 19668481 -124614008 - MIR3 SINE MIR -41 167 30 310 327 78 14 chr12 19668535 19668752 -124613737 - L3 LINE CR1 -346 1231 1001 237 65 0 0 chr12 19669378 19669409 -124613080 + (A)n Simple_repeat Simple_repeat 1 31 0 320 286 34 41 chr12 19669885 19670032 -124612457 - L1M4 LINE L1 -1445 4701 4556 461 283 146 31 chr12 19670038 19670264 -124612225 - MIR SINE MIR -8 254 3 382 281 208 22 chr12 19670749 19671062 -124611427 - L1M4 LINE L1 -2149 3997 3627 445 326 78 20 chr12 19671210 19671455 -124611034 - LTR33 LTR ERVL -157 364 106 1959 188 9 28 chr12 19672129 19672457 -124610032 - L1 LINE L1 -1128 5018 4698 191 88 29 0 chr12 19672457 19672491 -124609998 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1959 188 9 28 chr12 19672491 19672598 -124609891 - L1 LINE L1 -1448 4698 4591 2599 153 23 14 chr12 19672600 19673639 -124608850 + L1PA15 LINE L1 5030 6162 -3 24 32 0 0 chr12 19673791 19673822 -124608667 + AT_rich Low_complexity Low_complexity 1 31 0 760 304 45 13 chr12 19673967 19674348 -124608141 - L1ME3A LINE L1 -225 5945 5553 366 326 93 19 chr12 19674381 19674651 -124607838 - L1ME3A LINE L1 -3380 2766 2477 945 282 36 4 chr12 19675161 19675409 -124607080 - MIR SINE MIR 0 262 7 32 91 0 0 chr12 19675434 19675522 -124606967 + AT_rich Low_complexity Low_complexity 1 88 0 687 308 96 27 chr12 19675537 19675829 -124606660 + L2 LINE L2 3001 3312 -1 26 0 0 0 chr12 19676384 19676410 -124606079 + AT_rich Low_complexity Low_complexity 1 26 0 374 88 18 0 chr12 19676696 19676753 -124605736 - MLT1D LTR MaLR -1 504 447 7236 183 17 14 chr12 19676760 19678058 -124604431 + L1M1 LINE L1 15 1316 -6249 * 9502 115 12 68 chr12 19678055 19679773 -124602716 + L1PA8A LINE L1 2525 4146 -2000 2102 83 16 0 chr12 19679771 19680084 -124602405 - L1M1 LINE L1 -4822 2743 2426 * 7742 122 7 5 chr12 19680084 19682043 -124600446 + L1PA8A LINE L1 4169 6129 -2 7875 155 12 59 chr12 19682055 19683178 -124599311 + L1M1 LINE L1 2419 3593 -3972 3264 91 5 223 chr12 19683178 19684027 -124598462 + MER4A LTR ERV1 1 664 0 7875 155 12 59 chr12 19684027 19684694 -124597795 + L1M1 LINE L1 3593 4290 -3275 480 99 0 0 chr12 19684694 19684765 -124597724 + (TG)n Simple_repeat Simple_repeat 2 72 0 842 139 0 0 chr12 19684765 19684887 -124597602 - AluJb SINE Alu -190 122 1 7875 155 12 59 chr12 19684887 19685631 -124596858 + L1M1 LINE L1 4288 4938 -2627 44510 38 0 1 chr12 19685633 19691793 -124590696 + L1PA3 LINE L1 1 6152 -3 4500 170 23 0 chr12 19691783 19692607 -124589882 + L1M1 LINE L1 4891 5733 -1832 * 1375 161 99 0 chr12 19692608 19692851 -124589638 - MLT1D LTR MaLR -199 306 40 24 53 0 0 chr12 19693172 19693210 -124589279 + AT_rich Low_complexity Low_complexity 1 38 0 * 338 316 95 6 chr12 19693185 19693353 -124589136 + L1M4 LINE L1 2847 3029 -3117 213 65 0 0 chr12 19694055 19694086 -124588403 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 316 144 11 58 chr12 19694095 19694283 -124588206 + (TA)n Simple_repeat Simple_repeat 2 180 0 35 63 0 0 chr12 19694314 19694377 -124588112 + AT_rich Low_complexity Low_complexity 1 63 0 23 78 0 0 chr12 19694469 19694520 -124587969 + AT_rich Low_complexity Low_complexity 1 51 0 566 307 48 84 chr12 19694573 19695130 -124587359 + L1M4 LINE L1 3803 4339 -1807 548 302 63 10 chr12 19695373 19695578 -124586911 - MIR SINE MIR -10 252 37 224 206 32 0 chr12 19696164 19696227 -124586262 + A-rich Low_complexity Low_complexity 2 66 0 22 80 0 0 chr12 19696340 19696390 -124586099 + AT_rich Low_complexity Low_complexity 1 50 0 26 74 0 0 chr12 19696480 19696534 -124585955 + AT_rich Low_complexity Low_complexity 1 54 0 189 0 0 0 chr12 19696541 19696562 -124585927 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr12 19696636 19696658 -124585831 + AT_rich Low_complexity Low_complexity 1 22 0 369 287 8 16 chr12 19696931 19697060 -124585429 - MLT1H1 LTR MaLR 0 555 428 737 315 17 8 chr12 19697076 19697311 -124585178 - MLT1H1 LTR MaLR -254 301 65 647 316 59 19 chr12 19697388 19697695 -124584794 + LTR16B LTR ERVL 129 447 -17 237 198 40 40 chr12 19697700 19697801 -124584688 + (CTATA)n Simple_repeat Simple_repeat 3 103 0 249 178 44 0 chr12 19697812 19697857 -124584632 - MLT1H1 LTR MaLR -532 58 12 1268 123 5 0 chr12 19698340 19698527 -124583962 + MLT1C LTR MaLR 1 188 -279 1574 181 4 0 chr12 19698637 19698903 -124583586 + MLT1C LTR MaLR 199 465 -2 1459 264 40 11 chr12 19700222 19700748 -124581741 - L1M4 LINE L1 -1588 4558 4018 821 275 69 59 chr12 19700757 19701064 -124581425 + L2 LINE L2 2681 3001 -312 2474 58 0 16 chr12 19701064 19701372 -124581117 - AluY SINE Alu -8 303 1 821 275 69 59 chr12 19701372 19701604 -124580885 + L2 LINE L2 3001 3229 -84 243 0 0 0 chr12 19701660 19701687 -124580802 + (TA)n Simple_repeat Simple_repeat 2 28 0 821 160 0 0 chr12 19701976 19702095 -124580394 - FLAM_C SINE Alu -24 119 1 1781 162 0 7 chr12 19702213 19702497 -124579992 - AluJo SINE Alu -30 282 1 1991 160 0 0 chr12 19703304 19703604 -124578885 + AluJb SINE Alu 1 300 -12 23 0 0 0 chr12 19704095 19704118 -124578371 + AT_rich Low_complexity Low_complexity 1 23 0 875 238 60 34 chr12 19706355 19706653 -124575836 + MER46C DNA MER2_type 18 323 -15 258 304 51 0 chr12 19706709 19706788 -124575701 + MIR SINE MIR 67 149 -113 311 293 95 34 chr12 19707609 19707756 -124574733 - MIR3 SINE MIR -12 196 41 25 31 0 0 chr12 19708135 19708167 -124574322 + AT_rich Low_complexity Low_complexity 1 32 0 2373 66 3 16 chr12 19709759 19710063 -124572426 - AluY SINE Alu -11 300 1 2265 103 3 0 chr12 19710095 19710395 -124572094 + AluSp SINE Alu 1 301 -12 815 253 134 40 chr12 19711226 19711667 -124570822 - MLT1H LTR MaLR 0 542 55 278 183 14 14 chr12 19711677 19711748 -124570741 - MLT1G LTR MaLR -9 581 511 855 360 81 29 chr12 19713131 19714120 -124568369 + ERVL LTR ERVL 4287 5326 -438 958 299 17 23 chr12 19714331 19714685 -124567804 + LTR16A LTR ERVL 7 358 -92 287 278 0 74 chr12 19714808 19714916 -124567573 - MIR SINE MIR -78 184 85 204 226 0 0 chr12 19715199 19715252 -124567237 + A-rich Low_complexity Low_complexity 1 53 0 201 369 0 0 chr12 19715424 19715489 -124567000 + GA-rich Low_complexity Low_complexity 4 68 0 24 0 0 0 chr12 19716276 19716300 -124566189 + AT_rich Low_complexity Low_complexity 1 24 0 1637 184 32 0 chr12 19718234 19718512 -124563977 + AluJb SINE Alu 2 288 -24 321 291 118 24 chr12 19718763 19718890 -124563599 - MER5A DNA MER1_type 0 189 51 387 0 0 0 chr12 19718958 19719001 -124563488 + (CA)n Simple_repeat Simple_repeat 2 44 0 241 337 0 22 chr12 19719519 19719608 -124562881 + MIR SINE MIR 20 106 -102 240 198 198 12 chr12 19719802 19719883 -124562606 + MIR SINE MIR 101 196 -66 408 88 0 0 chr12 19721103 19721160 -124561329 + (CA)n Simple_repeat Simple_repeat 2 58 0 315 238 60 0 chr12 19722046 19722130 -124560359 + MIR SINE MIR 66 154 -108 16309 139 19 37 chr12 19722135 19723532 -124558957 - Tigger4(Zombi) DNA MER2_type -5 2726 1305 651 195 9 0 chr12 19723532 19723645 -124558844 - FLAM_C SINE Alu -19 114 1 16309 139 19 37 chr12 19723645 19724495 -124557994 - Tigger4(Zombi) DNA MER2_type -1426 1305 537 2128 103 7 13 chr12 19724495 19724795 -124557694 + AluSx SINE Alu 1 298 -14 16309 139 19 37 chr12 19724795 19725321 -124557168 - Tigger4(Zombi) DNA MER2_type -2194 537 3 588 204 0 9 chr12 19725368 19725481 -124557008 + FLAM_A SINE Alu 16 127 -15 950 194 75 5 chr12 19725764 19725965 -124556524 - MER20 DNA MER1_type 0 219 5 241 227 193 23 chr12 19726181 19726269 -124556220 + MIR SINE MIR 51 153 -109 4413 197 49 28 chr12 19726409 19727731 -124554758 - L1MA10 LINE L1 -1 6333 4974 4191 137 20 9 chr12 19727740 19728424 -124554065 - Tigger3b DNA MER2_type -526 705 14 1194 240 71 4 chr12 19728463 19728970 -124553519 - L1ME LINE L1 -501 5661 5121 701 280 139 51 chr12 19728980 19729391 -124553098 + L2 LINE L2 2867 3313 0 347 324 40 4 chr12 19729516 19729741 -124552748 - L1MEd LINE L1 -4991 1128 896 210 314 0 0 chr12 19730537 19730588 -124551901 - L2 LINE L2 -6 3266 3216 25 31 0 0 chr12 19731508 19731540 -124550949 + AT_rich Low_complexity Low_complexity 1 32 0 325 300 134 42 chr12 19732087 19732370 -124550119 - L2 LINE L2 0 3313 3005 10134 146 7 10 chr12 19732654 19734348 -124548141 + L1PA11 LINE L1 3337 5025 -1121 955 148 0 0 chr12 19734349 19734511 -124547978 - L1P LINE L1 -1392 4754 4593 6530 88 7 2 chr12 19734511 19735639 -124546850 + L1PA11 LINE L1 5033 6165 -9 27 29 0 0 chr12 19735639 19735673 -124546816 + AT_rich Low_complexity Low_complexity 1 34 0 243 125 0 0 chr12 19736306 19736346 -124546143 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 21 0 0 0 chr12 19737336 19737357 -124545132 + AT_rich Low_complexity Low_complexity 1 21 0 235 273 26 0 chr12 19737986 19738063 -124544426 + MER116 DNA Mariner 2 80 0 1502 198 40 69 chr12 19738240 19738721 -124543768 - LTR37B LTR ERV1 -1 467 1 2137 112 0 13 chr12 19738790 19739102 -124543387 + AluSx SINE Alu 1 308 -4 14797 193 60 9 chr12 19739641 19739951 -124542538 - L1PB1 LINE L1 -8 6859 6566 486 0 0 0 chr12 19739951 19740005 -124542484 + (TA)n Simple_repeat Simple_repeat 1 54 0 414 0 0 0 chr12 19740004 19740050 -124542439 + (GA)n Simple_repeat Simple_repeat 2 47 0 * 14797 193 60 9 chr12 19740005 19741409 -124541080 - L1PB1 LINE L1 -301 6566 5235 189 0 0 0 chr12 19741409 19741430 -124541059 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 14797 193 60 9 chr12 19741430 19744666 -124537823 - L1PB1 LINE L1 -1632 5235 1486 2292 113 0 0 chr12 19744666 19744977 -124537512 + AluSq SINE Alu 1 311 -2 14797 193 60 9 chr12 19744977 19746526 -124535963 - L1PB1 LINE L1 -5381 1486 17 25 0 0 0 chr12 19746550 19746575 -124535914 + AT_rich Low_complexity Low_complexity 1 25 0 1745 169 42 6 chr12 19746727 19747058 -124535431 + MER2 DNA MER2_type 1 343 -1 1335 279 82 60 chr12 19747199 19747797 -124534692 + L3 LINE CR1 320 930 -647 433 296 25 38 chr12 19747806 19747965 -124534524 + MIR SINE MIR 1 157 -105 610 294 69 9 chr12 19748152 19748385 -124534104 - MIR SINE MIR -5 257 11 210 338 60 20 chr12 19749643 19749794 -124532695 + L2 LINE L2 1865 2021 -1293 265 338 12 0 chr12 19749870 19749950 -124532539 - L2 LINE L2 -10 3303 3223 692 240 31 31 chr12 19750002 19750194 -124532295 + MIR SINE MIR 60 251 -11 250 266 16 16 chr12 19750575 19750639 -124531850 - L2 LINE L2 -4 3309 3246 2205 128 0 0 chr12 19750745 19751110 -124531379 + AluSx SINE Alu 1 365 0 200 273 0 0 chr12 19751146 19751190 -124531299 + L2 LINE L2 3217 3260 -12 2168 236 16 7 chr12 19751584 19752102 -124530387 + L1ME1 LINE L1 5655 6333 -1 223 378 27 14 chr12 19752296 19752444 -124530045 - L2 LINE L2 -993 2321 2172 637 203 105 14 chr12 19752628 19752796 -124529693 + MER39 LTR ERV1 7 144 -509 * 921 232 34 34 chr12 19752791 19753028 -124529461 + MER39 LTR ERV1 306 542 -165 543 197 45 38 chr12 19753030 19753162 -124529327 + FLAM_A SINE Alu 1 133 0 825 149 17 72 chr12 19753191 19753372 -124529117 + MER39 LTR ERV1 537 707 0 342 0 0 0 chr12 19753565 19753603 -124528886 + (A)n Simple_repeat Simple_repeat 1 38 0 299 241 45 98 chr12 19753978 19754090 -124528399 + MER5A DNA MER1_type 63 168 -21 431 299 105 40 chr12 19754110 19754558 -124527931 + L2 LINE L2 1791 2267 -1047 427 287 62 80 chr12 19754875 19755150 -124527339 - MLT1H LTR MaLR -198 351 82 21 0 0 0 chr12 19755363 19755384 -124527105 + AT_rich Low_complexity Low_complexity 1 21 0 5608 160 23 51 chr12 19755718 19756825 -124525664 + L1MA9 LINE L1 4217 5298 -1014 903 150 0 0 chr12 19756825 19756958 -124525531 + FLAM_C SINE Alu 1 133 0 5608 160 23 51 chr12 19756958 19757370 -124525119 + L1MA9 LINE L1 5298 5720 -592 1419 159 68 50 chr12 19757370 19757530 -124524959 + L1MA9 LINE L1 5986 6142 -170 327 49 0 0 chr12 19757530 19757571 -124524918 + (CA)n Simple_repeat Simple_repeat 2 42 0 1419 159 68 50 chr12 19757571 19757731 -124524758 + L1MA9 LINE L1 6142 6312 0 2916 266 131 19 chr12 19757745 19759027 -124523462 + L2 LINE L2 1835 3270 -43 778 230 49 11 chr12 19759035 19759430 -124523059 + MER34 LTR ERV1 41 540 -2 180 0 0 0 chr12 19760721 19760741 -124521748 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 453 165 153 0 chr12 19760970 19761055 -124521434 + FLAM_A SINE Alu 9 106 -36 449 0 0 35 chr12 19761078 19761136 -124521353 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 939 285 86 29 chr12 19761876 19762944 -124519545 - L1ME LINE L1 -648 5514 4378 624 245 10 139 chr12 19762976 19763270 -124519219 + MIR SINE MIR 1 256 -6 781 269 22 16 chr12 19763275 19763457 -124519032 - MLT1I LTR MaLR -2 407 225 809 251 49 0 chr12 19763532 19763715 -124518774 - MLT1I LTR MaLR -200 209 18 35 24 0 0 chr12 19763742 19763784 -124518705 + AT_rich Low_complexity Low_complexity 1 42 0 188 345 24 24 chr12 19763892 19763976 -124518513 - MIR SINE MIR -167 95 12 270 252 17 101 chr12 19764084 19764203 -124518286 - L1ME LINE L1 -1934 4212 4104 445 246 104 30 chr12 19764225 19764667 -124517822 - L1ME LINE L1 -694 5472 4985 207 0 0 0 chr12 19764990 19765013 -124517476 + (A)n Simple_repeat Simple_repeat 1 23 0 376 258 70 31 chr12 19765391 19765519 -124516970 + MIR SINE MIR 124 256 -6 332 292 35 26 chr12 19767526 19767639 -124514850 + MIR SINE MIR 20 133 -129 368 291 99 28 chr12 19768118 19768259 -124514230 + MIR SINE MIR 56 206 -56 313 87 43 0 chr12 19768268 19768338 -124514151 - Alu SINE Alu 0 309 238 2072 138 3 0 chr12 19770470 19770767 -124511722 + AluSx SINE Alu 1 298 -14 503 48 36 12 chr12 19771400 19771484 -124511005 + (TA)n Simple_repeat Simple_repeat 2 87 0 490 245 27 34 chr12 19771585 19771732 -124510757 - L2 LINE L2 -12 3301 3156 2247 110 0 0 chr12 19772035 19772344 -124510145 + AluSg1 SINE Alu 1 309 0 317 239 120 48 chr12 19772395 19772604 -124509885 + L1MEd LINE L1 991 1214 -4905 319 142 87 16 chr12 19772604 19772731 -124509758 + (TA)n Simple_repeat Simple_repeat 2 137 0 321 71 55 98 chr12 19772733 19772916 -124509573 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 234 116 23 0 chr12 19774251 19774294 -124508195 + MADE1 DNA Mariner 37 80 0 397 272 99 49 chr12 19774701 19774905 -124507584 + MIR SINE MIR 9 237 -25 2147 143 102 2 chr12 19776409 19776802 -124505687 - MSTB1 LTR MaLR 0 432 1 21 71 0 0 chr12 19776845 19776887 -124505602 + AT_rich Low_complexity Low_complexity 1 42 0 2213 117 0 10 chr12 19777976 19778285 -124504204 - MER1B DNA MER1_type -2 337 32 2121 119 13 7 chr12 19778341 19778643 -124503846 + AluSg SINE Alu 1 304 -6 317 309 151 22 chr12 19778711 19778850 -124503639 + L2 LINE L2 3116 3272 0 1658 148 9 62 chr12 19779532 19779857 -124502632 - MLT1B LTR MaLR -4 386 79 354 111 0 0 chr12 19779860 19779914 -124502575 + U2 snRNA snRNA 4 57 -131 * 534 115 19 77 chr12 19779909 19780013 -124502476 - MLT1B LTR MaLR -292 98 1 1690 185 6 23 chr12 19781262 19781604 -124500885 - MLT1A1 LTR MaLR -27 401 5 351 0 0 0 chr12 19782041 19782080 -124500409 + (CA)n Simple_repeat Simple_repeat 2 40 0 1201 274 110 68 chr12 19783221 19783784 -124498705 + MLT2E LTR ERVL 34 620 -8 30 45 0 0 chr12 19783864 19783908 -124498581 + AT_rich Low_complexity Low_complexity 1 44 0 32 0 0 0 chr12 19784365 19784397 -124498092 + AT_rich Low_complexity Low_complexity 1 32 0 2230 318 73 28 chr12 19784416 19785593 -124496896 + ERVL LTR ERVL 802 2031 -3733 407 169 78 0 chr12 19785601 19785678 -124496811 + MSTC LTR MaLR 1 83 -345 2404 125 11 16 chr12 19787160 19787537 -124494952 + THE1C LTR MaLR 1 375 0 267 31 0 0 chr12 19787602 19787634 -124494855 + (TG)n Simple_repeat Simple_repeat 2 33 0 180 378 16 24 chr12 19788082 19788209 -124494280 - L2 LINE L2 -9 3304 3179 264 30 0 0 chr12 19788330 19788363 -124494126 + (TG)n Simple_repeat Simple_repeat 2 34 0 866 244 92 58 chr12 19789148 19789496 -124492993 + MLT1A1 LTR MaLR 6 365 0 39 50 0 0 chr12 19790470 19790530 -124491959 + AT_rich Low_complexity Low_complexity 1 60 0 22976 127 14 12 chr12 19790682 19793283 -124489206 - L1PA8A LINE L1 -1 6445 3853 198 0 0 0 chr12 19793283 19793305 -124489184 + (TGG)n Simple_repeat Simple_repeat 1 22 0 22976 127 14 12 chr12 19793305 19797094 -124485395 - L1PA8A LINE L1 -2593 3853 4 259 170 38 28 chr12 19797560 19797666 -124484823 + (TA)n Simple_repeat Simple_repeat 2 108 0 190 306 56 28 chr12 19798997 19799105 -124483384 - L3 LINE CR1 -12 1565 1455 226 250 42 159 chr12 19799616 19799966 -124482523 + L2 LINE L2 2739 3053 -219 1771 149 29 32 chr12 19800109 19800418 -124482071 + AluJb SINE Alu 1 308 -4 650 264 82 72 chr12 19800933 19801338 -124481151 - MLT1I LTR MaLR 0 409 1 1860 174 0 13 chr12 19801755 19802065 -124480424 + AluJb SINE Alu 5 310 -2 713 239 28 0 chr12 19802714 19802856 -124479633 + FRAM SINE Alu 1 146 -30 930 182 42 118 chr12 19803154 19803537 -124478952 - MLT1A1 LTR MaLR 0 365 1 286 204 11 68 chr12 19804425 19804513 -124477976 + L2 LINE L2 3190 3272 0 509 323 95 26 chr12 19805197 19805429 -124477060 - MIR SINE MIR -14 248 1 632 298 198 32 chr12 19805911 19806441 -124476048 + L3 LINE CR1 636 1253 -324 184 327 83 60 chr12 19806585 19806753 -124475736 - L2 LINE L2 -53 3219 3048 2505 125 31 76 chr12 19806792 19807281 -124475208 - MLT1C LTR MaLR 0 467 1 371 322 88 64 chr12 19807829 19808283 -124474206 - L2 LINE L2 -342 2972 2508 215 353 8 16 chr12 19808310 19808432 -124474057 - MER5A DNA MER1_type -1 188 68 261 350 119 14 chr12 19808517 19808660 -124473829 + L3 LINE CR1 1352 1509 -68 305 284 200 19 chr12 19809185 19809340 -124473149 + MIR SINE MIR 2 184 -78 1333 217 81 21 chr12 19809833 19810215 -124472274 - MLT1C LTR MaLR -4 463 59 205 218 109 0 chr12 19810500 19810555 -124471934 + MIR SINE MIR 200 260 -2 3286 152 75 0 chr12 19810555 19811115 -124471374 - MER7C DNA MER2_type 0 602 1 670 138 17 0 chr12 19811393 19811509 -124470980 - L1M2 LINE L1 -492 5808 5691 340 325 0 0 chr12 19811695 19811809 -124470680 - L1M3b LINE L1 -5552 729 616 233 259 25 12 chr12 19811781 19811862 -124470627 - L1M3b LINE L1 -5520 761 680 * 6107 174 37 13 chr12 19811860 19814044 -124468445 + L1MA7 LINE L1 3988 6291 0 235 343 0 14 chr12 19814584 19814654 -124467835 - MIR3 SINE MIR -126 82 14 227 149 0 21 chr12 19814765 19814812 -124467677 + (TTTCC)n Simple_repeat Simple_repeat 1 46 0 484 252 116 7 chr12 19814940 19815095 -124467394 - MIR SINE MIR -70 192 21 2132 146 0 0 chr12 19815197 19815506 -124466983 - AluSx SINE Alu -3 309 1 181 169 169 84 chr12 19815861 19815932 -124466557 + L3 LINE CR1 708 784 -793 328 304 62 27 chr12 19816108 19816220 -124466269 + L2 LINE L2 3155 3270 -2 2457 196 22 0 chr12 19818037 19818482 -124464007 + MLT2B1 LTR ERVL 1 455 -65 6457 89 14 1 chr12 19818496 19819726 -124462763 + L1PA11 LINE L1 4925 6166 -8 29 78 0 0 chr12 19819726 19819790 -124462699 + AT_rich Low_complexity Low_complexity 1 64 0 578 206 14 7 chr12 19819892 19820033 -124462456 + MER104 DNA Tc2 37 178 -2 1605 180 42 52 chr12 19820162 19820563 -124461926 + MLT2C1 LTR ERVL 1 397 0 551 285 102 68 chr12 19820680 19821051 -124461438 - L1MC4a LINE L1 -1736 6072 5715 447 19 0 0 chr12 19821051 19821103 -124461386 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 551 285 102 68 chr12 19821103 19821523 -124460966 - L1MC4a LINE L1 -2093 5715 5254 506 253 99 70 chr12 19821723 19821996 -124460493 - L1MC4a LINE L1 -1194 4952 4672 281 337 49 43 chr12 19822124 19822287 -124460202 + MIR3 SINE MIR 37 200 -8 269 196 181 38 chr12 19824207 19824340 -124458149 - MIR SINE MIR -80 182 31 2836 142 33 16 chr12 19824707 19825056 -124457433 - L1PB4 LINE L1 0 6156 5794 309 51 0 0 chr12 19825056 19825095 -124457394 + (TA)n Simple_repeat Simple_repeat 1 39 0 2836 142 33 16 chr12 19825095 19825259 -124457230 - L1PB4 LINE L1 -362 5794 5634 1913 120 7 3 chr12 19825925 19826225 -124456264 - L1MA3 LINE L1 -7 6298 5998 762 187 0 0 chr12 19827073 19827212 -124455277 - FLAM_C SINE Alu -4 139 1 650 296 42 35 chr12 19827529 19827789 -124454700 + LTR16C LTR ERVL 101 362 -129 410 269 128 58 chr12 19828152 19828583 -124453906 + HERV16 LTR ERVL 343 803 -4193 362 356 17 0 chr12 19829084 19829258 -124453231 + HERV16 LTR ERVL 1454 1630 -4024 518 309 0 0 chr12 19829258 19829407 -124453082 + HERV16 LTR ERVL 1736 1884 -3112 1980 326 74 40 chr12 19829567 19830343 -124452146 + HERV16 LTR ERVL 2124 2969 -2795 2430 107 11 8 chr12 19830343 19830697 -124451792 - THE1A LTR MaLR 0 355 1 1980 326 74 40 chr12 19830697 19831314 -124451175 + HERV16 LTR ERVL 2969 3564 -2200 2249 85 7 7 chr12 19831773 19832078 -124450411 + AluSc SINE Alu 1 305 -4 227 267 50 0 chr12 19832139 19832240 -124450249 + L1ME4a LINE L1 5982 6087 -34 288 167 111 0 chr12 19833181 19833253 -124449236 + MER116 DNA Mariner 1 80 0 1100 315 163 41 chr12 19833925 19834826 -124447663 + L2 LINE L2 1953 3080 -233 2240 67 49 0 chr12 19834826 19835110 -124447379 + AluY SINE Alu 3 300 -11 1100 315 163 41 chr12 19835110 19835357 -124447132 + L2 LINE L2 3080 3295 -18 258 288 0 25 chr12 19835658 19835738 -124446751 + HAL1 LINE L1 1 78 -2429 243 61 0 0 chr12 19836733 19836766 -124445723 + (TC)n Simple_repeat Simple_repeat 2 34 0 223 349 106 15 chr12 19838123 19838255 -124444234 + L2 LINE L2 2926 3069 -203 198 386 0 0 chr12 19838399 19838469 -124444020 + L2 LINE L2 3238 3307 -6 278 274 106 26 chr12 19838985 19839098 -124443391 + MIR SINE MIR 68 189 -73 245 170 18 125 chr12 19839406 19839518 -124442971 - L1ME4a LINE L1 -53 6068 5969 635 139 104 26 chr12 19840101 19840216 -124442273 - FLAM_C SINE Alu -9 124 1 324 0 0 0 chr12 19840973 19841009 -124441480 + (TG)n Simple_repeat Simple_repeat 2 37 0 687 316 64 37 chr12 19841428 19841884 -124440605 + L1MEd LINE L1 680 1147 -4972 2049 112 7 0 chr12 19841961 19842239 -124440250 + AluSx SINE Alu 1 280 -32 265 74 19 19 chr12 19842245 19842299 -124440190 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 491 48 0 0 chr12 19842440 19842502 -124439987 + AluY SINE Alu 1 62 -251 1270 137 11 0 chr12 19842502 19842712 -124439777 + AluSg/x SINE Alu 97 308 0 381 252 42 42 chr12 19843174 19843293 -124439196 - MIR SINE MIR -70 192 74 189 345 46 11 chr12 19844656 19844743 -124437746 - MIR SINE MIR -6 256 167 5674 60 0 0 chr12 19844974 19845710 -124436779 - L1PA8 LINE L1 -2 6170 5435 1883 154 0 29 chr12 19845736 19846042 -124436447 - AluSx SINE Alu -15 297 1 309 350 117 12 chr12 19846126 19846289 -124436200 - HAL1 LINE L1 -697 1810 1631 623 318 90 38 chr12 19846290 19846711 -124435778 - HAL1 LINE L1 -904 1603 1161 332 283 131 2 chr12 19848130 19848322 -124434167 + L1ME3 LINE L1 5924 6154 -8 1076 203 25 0 chr12 19848481 19848718 -124433771 + MER63 DNA MER1_type 811 1053 -7 503 207 124 33 chr12 19848996 19849117 -124433372 + FLAM_C SINE Alu 2 133 0 3918 120 28 0 chr12 19849150 19849765 -124432724 + L1PB3 LINE L1 5523 6154 0 35 54 0 0 chr12 19850310 19850366 -124432123 + AT_rich Low_complexity Low_complexity 1 56 0 22 35 0 0 chr12 19850802 19850831 -124431658 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr12 19852547 19852573 -124429916 + AT_rich Low_complexity Low_complexity 1 26 0 531 316 86 6 chr12 19854418 19854592 -124427897 + MIR SINE MIR 52 239 -23 397 329 99 61 chr12 19854612 19854956 -124427533 + L3 LINE CR1 1220 1576 -1 298 313 121 0 chr12 19855246 19855345 -124427144 - L2 LINE L2 -4 3309 3199 377 309 10 27 chr12 19856474 19856636 -124425853 + MER5A DNA MER1_type 20 175 -3 1522 155 70 8 chr12 19857245 19857503 -124424986 + AluSx SINE Alu 1 274 -38 317 274 0 0 chr12 19857592 19857665 -124424824 + MLT1J LTR MaLR 112 184 -327 21291 149 32 22 chr12 19858129 19858899 -124423590 - L1MA3 LINE L1 0 7724 6963 2059 116 16 26 chr12 19858899 19859210 -124423279 + AluSx SINE Alu 1 308 -4 21291 149 32 22 chr12 19859210 19866075 -124416414 - L1MA3 LINE L1 -761 6963 11 680 174 79 17 chr12 19866991 19867169 -124415320 + MER53 DNA DNA 1 189 0 281 311 57 16 chr12 19868773 19868895 -124413594 - MIR3 SINE MIR -73 135 9 2293 180 14 5 chr12 19869213 19869636 -124412853 + MLT2B1 LTR ERVL 3 429 -91 231 88 0 0 chr12 19869804 19869838 -124412651 + (T)n Simple_repeat Simple_repeat 1 34 0 412 290 13 62 chr12 19871605 19871802 -124410687 + MER5A DNA MER1_type 1 189 0 243 315 11 11 chr12 19872109 19872198 -124410291 + MIR SINE MIR 47 135 -127 192 77 0 0 chr12 19873559 19873585 -124408904 + (CAA)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr12 19874632 19874660 -124407829 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr12 19874709 19874729 -124407760 + (A)n Simple_repeat Simple_repeat 1 20 0 2222 99 0 7 chr12 19874945 19875239 -124407250 + AluSg SINE Alu 2 293 -17 329 259 30 30 chr12 19875244 19875379 -124407110 - L1MC4 LINE L1 -1339 6983 1949 406 323 96 12 chr12 19875817 19875984 -124406505 + MER5A DNA MER1_type 7 187 -2 2361 174 83 10 chr12 19876222 19876704 -124405785 - LTR40a LTR ERVL -2 517 1 2155 241 133 46 chr12 19876787 19877552 -124404937 + L2 LINE L2 2039 2736 -577 2243 196 38 18 chr12 19877552 19878047 -124404442 - MLT1D LTR MaLR 0 505 1 2155 241 133 46 chr12 19878047 19878198 -124404291 + L2 LINE L2 2736 2872 -441 2033 108 40 77 chr12 19878198 19878272 -124404217 - THE1B LTR MaLR 0 364 289 2080 77 44 4 chr12 19878272 19878577 -124403912 + AluY SINE Alu 1 316 0 2033 108 40 77 chr12 19878577 19878879 -124403610 - THE1B LTR MaLR -75 289 1 2155 241 133 46 chr12 19878879 19879123 -124403366 + L2 LINE L2 2872 3309 -4 269 191 90 45 chr12 19879861 19879950 -124402539 + MER34 LTR ERV1 438 530 -12 4139 122 11 9 chr12 19880032 19880666 -124401823 - MER41B LTR ERV1 0 635 1 3318 125 82 16 chr12 19881143 19881717 -124400772 - LTR9 LTR ERV1 0 612 1 180 221 0 59 chr12 19882368 19882436 -124400053 + L2 LINE L2 3024 3087 -226 856 197 13 40 chr12 19882476 19882704 -124399785 - MER34 LTR ERV1 0 542 321 2077 143 36 51 chr12 19882714 19883182 -124399307 + LTR2B LTR ERV1 1 461 -29 284 279 0 13 chr12 19883361 19883440 -124399049 - MER39 LTR ERV1 -624 83 6 586 259 0 60 chr12 19883466 19883651 -124398838 + L2 LINE L2 3117 3290 -23 582 173 0 0 chr12 19883652 19883785 -124398704 + (TGGA)n Simple_repeat Simple_repeat 1 133 0 4000 165 14 11 chr12 19884111 19884821 -124397668 - MER50 LTR ERV1 -22 712 1 869 182 47 9 chr12 19885311 19885525 -124396964 + L1M4 LINE L1 4774 4995 -1151 * 5258 122 42 3 chr12 19885522 19886483 -124396006 + L1MA8 LINE L1 5231 6227 -64 666 271 53 21 chr12 19886483 19886767 -124395722 + MSTC LTR MaLR 1 293 -135 781 151 0 7 chr12 19886769 19886908 -124395581 + L1M2 LINE L1 5430 5567 -724 401 165 50 71 chr12 19886950 19887132 -124395357 + (TATG)n Simple_repeat Simple_repeat 1 178 0 739 175 26 91 chr12 19887196 19887350 -124395139 - MLT1A1 LTR MaLR -13 383 217 234 233 0 0 chr12 19887335 19887378 -124395111 + Alu SINE Alu 136 178 -130 * 1020 178 12 136 chr12 19888455 19888786 -124393703 - MLT1A1 LTR MaLR 0 365 76 985 192 0 20 chr12 19888786 19888984 -124393505 - AluJo SINE Alu -2 310 117 348 163 0 9 chr12 19888987 19889050 -124393439 - Alu SINE Alu -244 56 1 198 0 0 0 chr12 19889176 19889198 -124393291 + (A)n Simple_repeat Simple_repeat 1 22 0 1792 186 15 0 chr12 19889970 19890308 -124392181 + MER2 DNA MER2_type 1 343 -1 326 258 0 0 chr12 19893241 19893307 -124389182 + tRNA-Ile-ATT tRNA tRNA 9 74 -3 753 244 64 50 chr12 19894464 19894747 -124387742 + MLT1I LTR MaLR 20 306 -103 808 156 0 0 chr12 19895037 19895165 -124387324 + FLAM_C SINE Alu 1 128 -5 1786 194 0 6 chr12 19895697 19896011 -124386478 - AluJo SINE Alu 0 312 1 738 278 161 44 chr12 19896264 19896742 -124385747 - LTR67 LTR ERVL -4 553 20 407 260 221 16 chr12 19897263 19897587 -124384902 - L1MEc LINE L1 -5132 1815 1327 1963 140 0 20 chr12 19897904 19898197 -124384292 + AluSx SINE Alu 1 287 -25 384 22 0 0 chr12 19898200 19898245 -124384244 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 408 326 72 9 chr12 19898449 19898768 -124383721 - L1MEc LINE L1 -6023 1115 777 2363 110 0 0 chr12 19899844 19900154 -124382335 - AluSg SINE Alu 0 310 1 190 297 144 0 chr12 19900463 19900581 -124381908 - L2 LINE L2 -6 3307 3173 249 141 16 62 chr12 19900757 19900821 -124381668 - MER116 DNA Mariner 0 80 20 2852 6 0 28 chr12 19900821 19901146 -124381343 - AluYb8 SINE Alu 0 318 3 1714 180 0 35 chr12 19901261 19901578 -124380911 + AluJo SINE Alu 1 306 -6 2171 107 10 0 chr12 19901676 19901975 -124380514 + AluSx SINE Alu 1 302 -10 405 256 120 0 chr12 19902029 19902154 -124380335 - MIR SINE MIR -71 191 52 24 53 0 0 chr12 19902342 19902380 -124380109 + AT_rich Low_complexity Low_complexity 1 38 0 204 324 111 20 chr12 19903555 19903808 -124378681 + L2 LINE L2 1799 2074 -1240 206 227 15 45 chr12 19904689 19904755 -124377734 + CT-rich Low_complexity Low_complexity 2 65 0 1166 276 4 0 chr12 19907351 19907601 -124374888 + MIR SINE MIR 2 252 -10 1093 229 54 23 chr12 19907672 19908026 -124374463 + LTR40a LTR ERVL 155 519 0 258 272 0 0 chr12 19908037 19908118 -124374371 + L1ME1 LINE L1 3348 3428 -2718 2023 254 23 7 chr12 19908121 19908922 -124373567 + L1ME1 LINE L1 5062 5873 -293 30 69 0 0 chr12 19909354 19909412 -124373077 + GC_rich Low_complexity Low_complexity 1 58 0 185 0 40 0 chr12 19909825 19909850 -124372639 + (GGA)n Simple_repeat Simple_repeat 3 28 0 284 349 86 0 chr12 19912133 19912285 -124370204 - MIR SINE MIR -25 237 73 506 277 34 5 chr12 19912408 19912579 -124369910 - L1ME2 LINE L1 -71 6091 5921 2182 120 0 3 chr12 19912579 19912870 -124369619 + AluSq SINE Alu 1 290 -23 10342 129 37 27 chr12 19913011 19914839 -124367650 - Tigger1 DNA MER2_type -572 1846 1 355 311 67 7 chr12 19914839 19914974 -124367515 + MIR SINE MIR 5 147 -115 255 204 0 0 chr12 19914999 19915053 -124367436 + (TA)n Simple_repeat Simple_repeat 1 54 0 243 0 0 0 chr12 19915555 19915582 -124366907 + (T)n Simple_repeat Simple_repeat 1 27 0 28 0 0 0 chr12 19915675 19915703 -124366786 + GC_rich Low_complexity Low_complexity 1 28 0 396 0 0 0 chr12 19917127 19917171 -124365318 + (TG)n Simple_repeat Simple_repeat 2 45 0 2218 112 7 3 chr12 19917725 19918021 -124364468 + AluSq SINE Alu 1 297 -16 436 245 72 29 chr12 19918172 19918311 -124364178 + MIR SINE MIR 30 174 -88 2239 88 0 33 chr12 19918420 19918725 -124363764 + AluSx SINE Alu 1 295 -17 2373 100 0 0 chr12 19919440 19919750 -124362739 - AluSg SINE Alu 0 310 1 847 284 86 0 chr12 19919904 19920136 -124362353 - MIR SINE MIR -10 252 1 414 311 112 31 chr12 19920296 19920457 -124362032 + MER91A DNA MER1_type 5 178 -18 2315 52 18 0 chr12 19920706 19920992 -124361497 + AluY SINE Alu 1 291 -20 22 35 0 0 chr12 19921004 19921033 -124361456 + AT_rich Low_complexity Low_complexity 1 29 0 1564 173 23 47 chr12 19921033 19921333 -124361156 - AluJo SINE Alu -19 293 1 654 132 93 39 chr12 19921335 19921464 -124361025 - FRAM SINE Alu -17 159 24 260 308 0 0 chr12 19922278 19922343 -124360146 + GA-rich Low_complexity Low_complexity 2 66 0 21 0 0 0 chr12 19923751 19923772 -124358717 + AT_rich Low_complexity Low_complexity 1 21 0 276 353 75 40 chr12 19924094 19924267 -124358222 + MIR SINE MIR 34 212 -50 2302 100 3 0 chr12 19924445 19924745 -124357744 - AluSx SINE Alu -11 301 1 27 62 0 0 chr12 19926613 19926661 -124355828 + AT_rich Low_complexity Low_complexity 1 48 0 2018 147 3 0 chr12 19926702 19927002 -124355487 + AluJb SINE Alu 1 301 -11 1590 168 7 58 chr12 19927485 19927631 -124354858 + AluJo SINE Alu 5 128 -184 2370 97 0 0 chr12 19927631 19927929 -124354560 + AluSc SINE Alu 1 298 -11 1590 168 7 58 chr12 19927929 19928092 -124354397 + AluJo SINE Alu 128 298 -14 2199 104 3 7 chr12 19928136 19928434 -124354055 + AluSc SINE Alu 1 297 -12 207 0 0 0 chr12 19929166 19929189 -124353300 + (TA)n Simple_repeat Simple_repeat 2 24 0 343 312 8 16 chr12 19929845 19929970 -124352519 - MIR SINE MIR -94 168 45 385 296 45 18 chr12 19931001 19931221 -124351268 + L1ME3A LINE L1 2395 2620 -3526 563 240 7 27 chr12 19931359 19931509 -124350980 - MER58C DNA MER1_type -68 147 1 872 152 8 0 chr12 19931554 19931686 -124350803 + FLAM_C SINE Alu 1 133 -10 1689 245 75 109 chr12 19931698 19931737 -124350752 + L1ME3A LINE L1 3357 3396 -2774 2010 151 3 0 chr12 19931737 19932041 -124350448 + AluSx SINE Alu 1 305 -7 1689 245 75 109 chr12 19932041 19934789 -124347700 + L1ME3A LINE L1 3396 6047 -123 3320 78 2 21 chr12 19934789 19935128 -124347361 - L1PA14 LINE L1 -1 6160 5831 1996 100 0 15 chr12 19935128 19935398 -124347091 - AluSc SINE Alu -9 300 35 3320 78 2 21 chr12 19935398 19935534 -124346955 - L1PA14 LINE L1 -330 5831 5694 1689 245 75 109 chr12 19935534 19935564 -124346925 + L1ME3A LINE L1 6047 6077 -93 2394 96 0 6 chr12 19935598 19935910 -124346579 - AluSx SINE Alu -2 310 1 1136 151 14 119 chr12 19936530 19936815 -124345674 + AluJo SINE Alu 39 293 -19 181 364 0 0 chr12 19939565 19939631 -124342858 - L2 LINE L2 -451 2863 2798 991 266 89 51 chr12 19940064 19940538 -124341951 + MLT1J LTR MaLR 1 492 -19 227 234 0 0 chr12 19940692 19940739 -124341750 + MLT1I LTR MaLR 98 144 -265 260 193 26 13 chr12 19940932 19941010 -124341479 + MLT1H LTR MaLR 317 546 -3 2104 106 28 0 chr12 19941176 19941458 -124341031 + AluSx SINE Alu 1 290 -22 203 175 0 0 chr12 19941807 19941847 -124340642 + T-rich Low_complexity Low_complexity 1 40 0 293 206 262 16 chr12 19942061 19942187 -124340302 + MLT2E LTR ERVL 296 452 -176 2142 135 3 3 chr12 19942314 19942626 -124339863 - AluSx SINE Alu 0 312 1 1817 168 21 0 chr12 19942858 19943149 -124339340 + AluJo SINE Alu 2 298 -14 489 53 0 40 chr12 19943665 19943741 -124338748 + L1PA7 LINE L1 6082 6154 0 1798 201 16 26 chr12 19943980 19944358 -124338131 - MLT1A2 LTR MaLR 0 374 1 1388 249 73 39 chr12 19945235 19945700 -124336789 - MLT1H1 LTR MaLR 0 555 75 883 233 138 63 chr12 19946770 19947212 -124335277 - MLT1H LTR MaLR -1 548 74 489 34 0 0 chr12 19947747 19947806 -124334683 + (TA)n Simple_repeat Simple_repeat 2 60 0 832 129 0 0 chr12 19948070 19948194 -124334295 + AluJb SINE Alu 180 303 -9 2400 66 7 0 chr12 19948868 19949173 -124333316 + AluY SINE Alu 1 307 -4 320 292 68 30 chr12 19949440 19949626 -124332863 - MIR3 SINE MIR -70 192 3 1766 174 3 20 chr12 19951281 19951585 -124330904 - AluSx SINE Alu -13 299 1 348 288 55 68 chr12 19952422 19952568 -124329921 + MIR3 SINE MIR 3 146 -62 373 283 65 28 chr12 19952965 19953212 -124329277 + L2 LINE L2 1797 2052 -1262 405 330 27 5 chr12 19953219 19953404 -124329085 + MER5A DNA MER1_type 1 189 0 370 315 112 52 chr12 19953408 19953865 -124328624 + L2 LINE L2 2219 2783 -531 327 387 61 11 chr12 19953941 19954122 -124328367 + L2 LINE L2 2894 3083 -189 262 61 41 0 chr12 19954559 19954608 -124327881 + (TA)n Simple_repeat Simple_repeat 2 52 0 24 0 0 0 chr12 19955067 19955091 -124327398 + AT_rich Low_complexity Low_complexity 1 24 0 209 254 0 75 chr12 19955157 19955224 -124327265 + L2 LINE L2 3211 3272 0 938 277 52 47 chr12 19956464 19956930 -124325559 + MLT1J LTR MaLR 44 511 0 295 224 158 0 chr12 19956930 19957006 -124325483 + L2 LINE L2 3184 3271 -1 225 125 0 0 chr12 19957457 19957474 -124325015 + (TAA)n Simple_repeat Simple_repeat 1 17 -23 2017 127 0 3 chr12 19957474 19957758 -124324731 + AluSg SINE Alu 1 283 -27 225 125 0 0 chr12 19957758 19957780 -124324709 + (TAA)n Simple_repeat Simple_repeat 16 40 0 2281 115 0 3 chr12 19958114 19958426 -124324063 + AluSq SINE Alu 1 311 -2 810 243 6 0 chr12 19959223 19959400 -124323089 - MER45A DNA AcHobo 0 178 1 293 197 26 66 chr12 19959559 19959635 -124322854 - L2 LINE L2 0 3313 3241 712 289 88 29 chr12 19959706 19960193 -124322296 + L1ME4a LINE L1 5501 6029 -92 2182 122 0 0 chr12 19960193 19960480 -124322009 - AluSx SINE Alu -25 287 1 712 289 88 29 chr12 19960480 19960574 -124321915 + L1ME4a LINE L1 6029 6116 -5 225 321 12 12 chr12 19960759 19960840 -124321649 - L3 LINE CR1 -24 1553 1473 1528 189 35 7 chr12 19961139 19961425 -124321064 - AluJo SINE Alu -18 294 1 1883 189 113 0 chr12 19961449 19961830 -124320659 + MSTB LTR MaLR 1 424 -2 306 0 0 0 chr12 19962060 19962094 -124320395 + (CA)n Simple_repeat Simple_repeat 2 35 0 342 0 0 0 chr12 19962385 19962423 -124320066 + (TTTTC)n Simple_repeat Simple_repeat 1 38 0 2115 101 0 21 chr12 19962424 19962895 -124319594 - AluSx SINE Alu 0 467 3 872 167 0 29 chr12 19963250 19963388 -124319101 - AluJo SINE Alu -178 134 1 1577 150 61 64 chr12 19963421 19963570 -124318919 - AluJo SINE Alu 0 312 164 2421 77 0 3 chr12 19963570 19963869 -124318620 - AluY SINE Alu -13 298 1 1577 150 61 64 chr12 19963869 19964032 -124318457 - AluJo SINE Alu -148 164 1 1744 142 4 4 chr12 19964721 19964975 -124317514 - AluJb SINE Alu -58 254 1 1074 185 5 5 chr12 19965547 19965736 -124316753 + AluJo SINE Alu 105 293 -19 2916 132 43 62 chr12 19965752 19966062 -124316427 + L1MB4 LINE L1 5584 5878 -302 2367 66 0 7 chr12 19966062 19966365 -124316124 + AluY SINE Alu 1 301 -10 2916 132 43 62 chr12 19966365 19966662 -124315827 + L1MB4 LINE L1 5878 6179 -1 2541 52 0 0 chr12 19967043 19967352 -124315137 - AluY SINE Alu -2 309 1 421 282 61 0 chr12 19967366 19967547 -124314942 + L1ME4a LINE L1 5602 5793 -328 411 322 192 9 chr12 19967561 19967775 -124314714 + MIR SINE MIR 8 260 -2 397 293 29 29 chr12 19967896 19968070 -124314419 + L1ME4a LINE L1 5947 6120 -1 2514 50 0 0 chr12 19968183 19968482 -124314007 - AluY SINE Alu -8 303 5 41 30 0 15 chr12 19969551 19969576 -124312913 + AT_rich Low_complexity Low_complexity 1 25 -40 1152 84 0 0 chr12 19969576 19969730 -124312759 + L1PB1 LINE L1 5997 6150 -1 41 30 0 15 chr12 19969730 19969770 -124312719 + AT_rich Low_complexity Low_complexity 25 65 0 1971 147 0 13 chr12 19969993 19970292 -124312197 + AluSx SINE Alu 3 297 -15 209 321 12 12 chr12 19971076 19971157 -124311332 - L2 LINE L2 -213 3059 2979 591 349 144 23 chr12 19971339 19971986 -124310503 - L2 LINE L2 -561 2753 1961 2187 118 3 7 chr12 19971986 19972291 -124310198 - AluSx SINE Alu -7 305 2 591 349 144 23 chr12 19972291 19972560 -124309929 - L2 LINE L2 -1353 1961 1726 186 161 0 0 chr12 19973237 19973268 -124309221 - MIR SINE MIR -8 254 224 260 357 18 30 chr12 19973268 19973436 -124309053 - L2 LINE L2 -159 3113 2948 262 169 0 62 chr12 19973474 19973539 -124308950 - L2 LINE L2 -660 2654 2594 2378 75 9 25 chr12 19973595 19973913 -124308576 - AluSp SINE Alu 0 313 1 2254 210 11 11 chr12 19974069 19974536 -124307953 + MLT1C LTR MaLR 1 467 0 741 283 50 35 chr12 19975312 19975595 -124306894 - MLT1I LTR MaLR -7 402 116 287 271 45 39 chr12 19975809 19975964 -124306525 - MER103 DNA DNA -2 164 9 23 33 0 0 chr12 19976078 19976108 -124306381 + AT_rich Low_complexity Low_complexity 1 30 0 1681 174 0 27 chr12 19976357 19976679 -124305810 - AluJb SINE Alu 0 312 1 21 36 0 0 chr12 19976900 19976928 -124305561 + AT_rich Low_complexity Low_complexity 1 28 0 2128 121 0 10 chr12 19977407 19977705 -124304784 + AluSx SINE Alu 1 295 -17 25 51 0 0 chr12 19977728 19977767 -124304722 + AT_rich Low_complexity Low_complexity 1 39 0 212 167 24 0 chr12 19977775 19977817 -124304672 + (CA)n Simple_repeat Simple_repeat 1 43 0 * 220 191 0 0 chr12 19977812 19977854 -124304635 + (CAA)n Simple_repeat Simple_repeat 2 43 0 207 0 0 0 chr12 19979779 19979802 -124302687 + (A)n Simple_repeat Simple_repeat 1 23 0 2060 144 7 0 chr12 19979907 19980212 -124302277 - AluSx SINE Alu -5 307 1 2090 133 3 19 chr12 19981052 19981369 -124301120 + AluSx SINE Alu 1 312 0 809 161 84 7 chr12 19981602 19981745 -124300744 + FRAM SINE Alu 1 145 -31 4643 73 5 8 chr12 19982007 19982594 -124299895 + SVA Other Other 802 1386 0 2459 67 0 0 chr12 19983594 19983891 -124298598 - AluSg SINE Alu -13 297 1 1050 198 0 6 chr12 19984019 19984201 -124298288 - AluJo SINE Alu -12 300 120 1668 126 0 0 chr12 19984499 19984729 -124297760 + AluSg/x SINE Alu 82 311 -1 1773 177 19 19 chr12 19985682 19985993 -124296496 + AluJo SINE Alu 2 312 0 453 81 0 0 chr12 19986446 19986508 -124295981 + (TA)n Simple_repeat Simple_repeat 1 62 0 1687 184 54 3 chr12 19986773 19987105 -124295384 - MLT1C LTR MaLR 0 467 119 * 2023 189 78 25 chr12 19987099 19987665 -124294824 + LTR1B LTR ERV1 231 826 0 595 277 131 18 chr12 19987992 19988320 -124294169 + MLT1G1 LTR MaLR 231 595 0 1259 148 14 23 chr12 19988479 19988695 -124293794 + L1PB4 LINE L1 5938 6151 -5 1812 160 3 7 chr12 19988698 19989001 -124293488 - AluJb SINE Alu 0 302 1 355 366 41 5 chr12 19989034 19989228 -124293261 + MIR SINE MIR 61 261 -1 634 355 96 15 chr12 19989252 19989660 -124292829 - L2 LINE L2 -6 3266 2826 581 301 75 25 chr12 19991499 19991738 -124290751 + MIR SINE MIR 6 256 -6 853 323 92 11 chr12 19991756 19992468 -124290021 - L2 LINE L2 -1 3312 2524 1876 169 0 3 chr12 19992485 19992781 -124289708 + AluJb SINE Alu 1 295 -17 1218 204 5 0 chr12 19993899 19994120 -124288369 - AluJo SINE Alu -6 306 85 453 355 62 5 chr12 19994384 19994595 -124287894 - MIR SINE MIR -12 250 28 339 311 23 15 chr12 19994949 19995081 -124287408 + MLT1J LTR MaLR 2 134 -377 2169 181 106 53 chr12 19995111 19995582 -124286907 - MER92B LTR ERV1 0 636 125 2154 124 134 11 chr12 19995582 19995962 -124286527 - MSTA LTR MaLR 0 428 2 2169 181 106 53 chr12 19995962 19996094 -124286395 - MER92B LTR ERV1 -511 125 1 427 205 18 94 chr12 19996171 19996342 -124286147 + MLT1J LTR MaLR 318 475 -36 1017 207 110 61 chr12 19996853 19997304 -124285185 + MER39 LTR ERV1 67 707 0 2672 180 104 16 chr12 19997947 19998515 -124283974 - LTR26E LTR ERV1 -4 618 1 328 259 9 28 chr12 19999033 19999141 -124283348 + MER34 LTR ERV1 25 130 -412 2243 110 7 3 chr12 19999428 19999736 -124282753 - AluSx SINE Alu -3 309 1 326 219 21 52 chr12 20000179 20000275 -124282214 + L2 LINE L2 3221 3313 0 2740 203 99 58 chr12 20000291 20001105 -124281384 + MER21B LTR ERV1 5 852 -11 216 351 121 17 chr12 20001264 20001438 -124281051 + MIR SINE MIR 71 262 0 973 231 100 31 chr12 20001744 20001885 -124280604 + MER93a LTR ERV1 61 191 -211 1841 136 70 0 chr12 20001885 20002201 -124280288 + MER44D DNA MER2_type 2 609 0 973 231 100 31 chr12 20002201 20002379 -124280110 + MER93a LTR ERV1 191 402 0 1139 175 9 33 chr12 20002774 20002985 -124279504 - AluJo SINE Alu -21 291 86 2202 85 4 0 chr12 20004221 20004537 -124277952 - AluSx SINE Alu 0 317 1 326 318 65 50 chr12 20005134 20005335 -124277154 - L2 LINE L2 -175 3097 2894 207 315 77 23 chr12 20005386 20005516 -124276973 - L2 LINE L2 -558 2756 2620 551 197 62 68 chr12 20005579 20005725 -124276764 - MLT2D LTR ERVL -40 480 237 371 164 27 9 chr12 20005725 20005835 -124276654 + (TA)n Simple_repeat Simple_repeat 2 113 0 272 151 57 0 chr12 20005837 20005890 -124276599 + MLT2D LTR ERVL 234 289 -125 243 169 0 0 chr12 20005903 20005974 -124276515 + (TA)n Simple_repeat Simple_repeat 1 71 0 226 233 82 92 chr12 20005974 20006180 -124276309 + HAL1 LINE L1 837 1040 -1467 193 222 0 56 chr12 20006688 20006742 -124275747 - L2 LINE L2 0 3313 3263 1897 125 78 33 chr12 20008336 20008695 -124273794 - THE1C LTR MaLR 0 375 1 7434 142 7 43 chr12 20008697 20010057 -124272432 - THE1C-int LTR MaLR -2 1578 269 1184 147 30 22 chr12 20010157 20010389 -124272100 + THE1C LTR MaLR 142 375 0 1520 93 0 4 chr12 20010390 20010615 -124271874 - THE1C-int LTR MaLR -1354 226 3 1908 124 93 34 chr12 20010617 20010971 -124271518 - THE1C LTR MaLR 0 375 1 2421 229 84 20 chr12 20011078 20011778 -124270711 - MER21B LTR ERV1 -107 756 12 266 316 22 104 chr12 20012595 20012741 -124269748 - L2 LINE L2 -562 2752 2636 2161 122 0 0 chr12 20012741 20013028 -124269461 + AluSg SINE Alu 5 291 -19 266 316 22 104 chr12 20013028 20013150 -124269339 - L2 LINE L2 -678 2636 2506 2039 162 68 16 chr12 20013436 20013874 -124268615 - LOR1b LTR ERV1 0 461 1 472 330 123 37 chr12 20014183 20014773 -124267716 - L2 LINE L2 0 3272 2647 390 42 0 0 chr12 20017597 20017645 -124264844 + (TG)n Simple_repeat Simple_repeat 2 49 0 798 217 42 19 chr12 20017762 20018025 -124264464 - MER69 DNA AcHobo -7 2519 2251 * 1963 246 72 50 chr12 20018023 20018267 -124264222 - MER69 DNA AcHobo -1425 1101 864 612 211 31 0 chr12 20018267 20018395 -124264094 - FLAM_A SINE Alu -1 132 1 1963 246 72 50 chr12 20018395 20019143 -124263346 - MER69 DNA AcHobo -1662 864 8 2145 132 0 6 chr12 20019264 20019575 -124262914 + AluSq SINE Alu 1 309 -4 3818 44 0 0 chr12 20020015 20020474 -124262015 - L1PA3 LINE L1 -5 6150 5692 2290 88 0 32 chr12 20020582 20020890 -124261599 + AluSx SINE Alu 1 298 -14 415 367 54 17 chr12 20021015 20021255 -124261234 - L2 LINE L2 -220 3052 2804 349 248 72 20 chr12 20021411 20021564 -124260925 + L1MC4a LINE L1 6137 6297 -1511 8419 135 36 2 chr12 20021564 20022990 -124259499 + Tigger1 DNA MER2_type 1 1475 -943 5292 85 8 30 chr12 20022994 20023795 -124258694 + L1PA11 LINE L1 5384 6166 -8 4701 133 90 27 chr12 20023810 20024501 -124257988 + Tigger1 DNA MER2_type 1465 2227 -191 2092 143 10 0 chr12 20024501 20024809 -124257680 - AluSx SINE Alu -1 311 1 4701 133 90 27 chr12 20024809 20025013 -124257476 + Tigger1 DNA MER2_type 2227 2417 -1 1303 236 73 13 chr12 20025083 20025536 -124256953 + L1MC4 LINE L1 6599 7078 -964 1252 191 0 42 chr12 20025543 20025779 -124256710 + AluJo SINE Alu 87 312 0 1941 204 60 23 chr12 20025804 20026284 -124256205 + L1MC4 LINE L1 7191 7688 -354 857 107 7 14 chr12 20026303 20026443 -124256046 - L1PA14 LINE L1 0 6161 6023 1911 203 27 47 chr12 20026453 20026505 -124255984 + L1ME LINE L1 5150 5202 -964 2191 120 0 16 chr12 20026505 20026821 -124255668 + AluSx SINE Alu 1 311 -1 1911 203 27 47 chr12 20026821 20027355 -124255134 + L1ME LINE L1 5202 5723 -443 1443 267 71 53 chr12 20027355 20027508 -124254981 + L2 LINE L2 2550 2699 -614 2992 55 3 8 chr12 20027508 20027893 -124254596 - L1PA7 LINE L1 -1 6153 5771 1443 267 71 53 chr12 20027893 20028294 -124254195 + L2 LINE L2 2699 3165 -148 2349 84 3 23 chr12 20028294 20028604 -124253885 - AluSp SINE Alu -9 304 1 1443 267 71 53 chr12 20028604 20028756 -124253733 + L2 LINE L2 3165 3313 0 1608 177 52 0 chr12 20034343 20034513 -124247976 - AluJo SINE Alu -9 303 110 180 0 0 0 chr12 20034513 20034533 -124247956 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 1608 177 52 0 chr12 20034533 20034650 -124247839 - AluJo SINE Alu -202 110 1 1925 89 75 14 chr12 20035511 20035792 -124246697 - AluSq SINE Alu -15 298 1 181 189 0 57 chr12 20036078 20036131 -124246358 - MIR SINE MIR -45 217 168 2370 95 0 0 chr12 20036761 20037057 -124245432 + AluSx SINE Alu 6 301 -11 364 346 96 51 chr12 20037298 20037786 -124244703 - L2 LINE L2 -459 2855 2346 504 271 107 23 chr12 20037971 20038148 -124244341 - L2 LINE L2 -2 3311 3120 205 314 15 73 chr12 20038580 20038717 -124243772 - L2 LINE L2 -68 3245 3117 210 257 188 30 chr12 20039006 20039107 -124243382 + L2 LINE L2 3151 3267 -5 2094 107 0 17 chr12 20039260 20039558 -124242931 - AluSx SINE Alu -19 293 1 1757 153 10 43 chr12 20040542 20040842 -124241647 + AluJo SINE Alu 1 290 -22 2348 165 105 31 chr12 20041147 20041754 -124240735 - L1MA9 LINE L1 -168 6144 5493 371 258 32 8 chr12 20041872 20041996 -124240493 - L1ME4a LINE L1 -1 6120 5994 231 293 37 18 chr12 20042012 20042176 -124240313 + (TA)n Simple_repeat Simple_repeat 2 168 0 275 198 0 143 chr12 20042473 20042564 -124239925 - L1ME4a LINE L1 -538 5583 5506 388 237 101 0 chr12 20042673 20042812 -124239677 - MLT1H1 LTR MaLR -3 552 400 333 289 83 22 chr12 20043074 20043254 -124239235 + MER117 DNA MER1_type 1 191 -6 390 345 115 14 chr12 20043866 20044144 -124238345 - L1ME4a LINE L1 -89 6032 5727 310 254 71 25 chr12 20044652 20044856 -124237633 - L1ME4a LINE L1 -653 5511 5299 311 196 0 103 chr12 20044918 20045025 -124237464 - Charlie7 DNA MER1_type -6 2606 2511 431 129 69 10 chr12 20045029 20045130 -124237359 - Charlie7 DNA MER1_type -2455 157 51 192 77 0 0 chr12 20046051 20046077 -124236412 + (T)n Simple_repeat Simple_repeat 1 26 0 1848 160 3 7 chr12 20046208 20046502 -124235987 - AluJo SINE Alu -19 293 1 2322 111 0 0 chr12 20046511 20046818 -124235671 - AluSx SINE Alu -2 310 4 1361 254 62 47 chr12 20047656 20047695 -124234794 - MLT1H LTR MaLR 0 549 512 2231 86 7 10 chr12 20047695 20047998 -124234491 + AluY SINE Alu 10 311 0 1361 254 62 47 chr12 20047998 20048494 -124233995 - MLT1H LTR MaLR -37 512 6 419 349 51 20 chr12 20048905 20049100 -124233389 + L2 LINE L2 3104 3304 -9 228 343 140 19 chr12 20049271 20049586 -124232903 - L2 LINE L2 -2200 1114 762 270 343 106 16 chr12 20049590 20049844 -124232645 - L2 LINE L2 -2881 433 157 2442 70 0 0 chr12 20050330 20050631 -124231858 - AluY SINE Alu -10 301 1 238 308 47 0 chr12 20051323 20051430 -124231059 - L1ME4a LINE L1 -891 5255 5144 1079 279 101 45 chr12 20051508 20051899 -124230590 - L1ME4a LINE L1 -1954 4192 3757 1459 179 19 19 chr12 20051899 20052212 -124230277 - L1MC1 LINE L1 -6 6327 6015 1079 279 101 45 chr12 20052212 20052394 -124230095 - L1ME4a LINE L1 -2389 3757 3587 232 281 100 76 chr12 20052405 20052775 -124229714 - L1ME4a LINE L1 -3575 2571 2193 189 121 0 0 chr12 20054658 20054691 -124227798 + (T)n Simple_repeat Simple_repeat 1 33 0 1682 122 17 54 chr12 20055234 20055530 -124226959 + AluSx SINE Alu 7 291 -21 339 25 0 0 chr12 20055559 20055599 -124226890 + (CA)n Simple_repeat Simple_repeat 2 41 0 201 344 62 31 chr12 20055739 20055835 -124226654 - L2 LINE L2 -23 3249 3151 206 256 12 49 chr12 20056040 20056122 -124226367 - MIR SINE MIR -14 248 170 2228 75 0 4 chr12 20056557 20056835 -124225654 + AluY SINE Alu 16 292 -19 305 231 308 14 chr12 20058910 20059131 -124223358 - L1ME4a LINE L1 -2 6119 5834 23 0 0 0 chr12 20059280 20059303 -124223186 + AT_rich Low_complexity Low_complexity 1 23 0 242 146 0 73 chr12 20060036 20060091 -124222398 + MER5B DNA MER1_type 128 178 0 1020 177 35 0 chr12 20060434 20060637 -124221852 - Charlie4 DNA MER1_type -1735 226 17 209 229 49 33 chr12 20060859 20060920 -124221569 - MIR SINE MIR -10 252 191 255 320 41 25 chr12 20061165 20061287 -124221202 + MIR SINE MIR 86 209 -53 419 278 58 68 chr12 20061437 20061642 -124220847 - MIR SINE MIR -3 259 57 851 114 0 0 chr12 20111643 20111766 -124170723 - L1P5 LINE L1 -496 5660 5538 313 329 92 38 chr12 20112177 20112417 -124170072 - MIR SINE MIR -3 259 7 1994 123 3 23 chr12 20112591 20112900 -124169589 + AluJb SINE Alu 4 306 -6 200 176 20 20 chr12 20112959 20113010 -124169479 + (TA)n Simple_repeat Simple_repeat 2 52 0 294 259 26 17 chr12 20113011 20113127 -124169362 - L1ME4a LINE L1 -1942 5866 5750 264 59 0 0 chr12 20113998 20114032 -124168457 + (T)n Simple_repeat Simple_repeat 1 34 0 199 328 80 42 chr12 20114221 20114483 -124168006 + L2 LINE L2 1834 2105 -1209 416 306 261 13 chr12 20114546 20114853 -124167636 + L2 LINE L2 2904 3286 -27 513 0 0 0 chr12 20114880 20114937 -124167552 + (TG)n Simple_repeat Simple_repeat 2 58 0 1051 276 140 52 chr12 20115084 20115861 -124166628 + L2 LINE L2 2450 3311 -2 21 0 0 0 chr12 20116070 20116091 -124166398 + AT_rich Low_complexity Low_complexity 1 21 0 2509 123 63 19 chr12 20117013 20117486 -124165003 + L1MA4A LINE L1 5808 6301 -2 3115 212 62 26 chr12 20117922 20119184 -124163305 + L1MB7 LINE L1 4857 6171 -13 342 317 85 18 chr12 20119399 20119563 -124162926 + MIR SINE MIR 48 222 -40 307 155 35 0 chr12 20119857 20119915 -124162574 + L1MC1 LINE L1 6110 6169 -164 196 291 13 25 chr12 20123974 20124053 -124158436 + MIR SINE MIR 21 98 -110 238 280 0 0 chr12 20125276 20125326 -124157163 + L2 LINE L2 3210 3259 -13 2192 91 10 7 chr12 20125329 20125625 -124156864 + AluSq SINE Alu 1 297 -16 277 328 147 17 chr12 20125947 20126063 -124156426 + 7SLRNA srpRNA srpRNA 25 155 -165 8065 134 20 2 chr12 20126187 20127462 -124155027 + HSMAR2 DNA Mariner 2 1300 -2 23 68 0 0 chr12 20128289 20128333 -124154156 + AT_rich Low_complexity Low_complexity 1 44 0 959 208 153 64 chr12 20128417 20128836 -124153653 + MLT1D LTR MaLR 7 462 -43 1553 131 15 12 chr12 20128841 20129289 -124153200 - LTR54 LTR ERV1 0 510 2 311 154 0 0 chr12 20129296 20129348 -124153141 - MLT1D LTR MaLR 0 505 454 582 140 0 11 chr12 20129402 20129495 -124152994 + AluSg/x SINE Alu 192 283 -27 1464 135 9 0 chr12 20129604 20129819 -124152670 + AluSq SINE Alu 1 217 -96 195 69 0 0 chr12 20130026 20130055 -124152434 + (T)n Simple_repeat Simple_repeat 1 29 0 227 292 92 15 chr12 20130076 20130141 -124152348 - MIR SINE MIR -185 77 8 207 344 0 0 chr12 20130435 20130496 -124151993 - L2 LINE L2 -227 3045 2985 188 339 91 8 chr12 20131892 20132013 -124150476 - L2 LINE L2 -1965 1349 1219 2340 85 3 0 chr12 20132099 20132392 -124150097 + AluSx SINE Alu 1 294 -18 23 33 0 0 chr12 20132496 20132526 -124149963 + AT_rich Low_complexity Low_complexity 1 30 0 2291 107 0 0 chr12 20133584 20133882 -124148607 + AluSx SINE Alu 1 298 -14 222 228 0 152 chr12 20134380 20134459 -124148030 - L2 LINE L2 -1 3312 3246 199 318 71 19 chr12 20134878 20135032 -124147457 - L2 LINE L2 -1341 1973 1812 460 177 150 9 chr12 20135117 20135230 -124147259 - MLT1F1 LTR MaLR -6 561 433 233 167 0 0 chr12 20135227 20135263 -124147226 - MLT1F LTR MaLR -506 36 1 * 203 120 0 20 chr12 20136097 20136147 -124146342 + (TTTTTA)n Simple_repeat Simple_repeat 1 49 0 459 0 0 0 chr12 20136148 20136204 -124146285 - L1HS LINE L1 -2 6153 6098 1151 192 0 63 chr12 20136236 20136491 -124145998 - MER8 DNA MER2_type 0 239 1 5107 168 56 7 chr12 20137994 20138998 -124143491 + L1MC3 LINE L1 5281 5400 -746 844 118 99 0 chr12 20139010 20139162 -124143327 + L1MC3 LINE L1 7450 7616 -169 743 131 0 77 chr12 20139175 20139305 -124143184 + FLAM_A SINE Alu 1 120 -13 288 211 0 0 chr12 20139305 20139381 -124143108 + (TA)n Simple_repeat Simple_repeat 1 76 0 180 77 0 0 chr12 20140193 20140219 -124142270 + (T)n Simple_repeat Simple_repeat 1 26 0 296 266 199 6 chr12 20140248 20140405 -124142084 - HsTC2 DNA Tc2 -417 1481 1295 348 245 32 21 chr12 20140418 20140512 -124141977 - HsTC2 DNA Tc2 -1754 144 50 239 281 0 18 chr12 20140746 20140803 -124141686 - MER113 DNA MER1_type? -2 519 464 198 0 0 0 chr12 20141570 20141592 -124140897 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 661 208 107 7 chr12 20142055 20142204 -124140285 + FAM SINE Alu 1 164 -11 538 198 0 33 chr12 20143204 20143325 -124139164 - L1MB5 LINE L1 -1 6173 6057 2418 139 31 7 chr12 20143329 20143754 -124138735 - L1MB5 LINE L1 -204 5970 5536 314 234 46 138 chr12 20144388 20144606 -124137883 + MLT1L LTR MaLR 1 198 -417 259 195 61 49 chr12 20144622 20144704 -124137785 - MLT1J LTR MaLR -52 459 377 314 318 110 13 chr12 20144838 20144992 -124137497 - MLT1J LTR MaLR -342 169 1 485 234 167 31 chr12 20145684 20145876 -124136613 - MIR SINE MIR -19 243 26 7037 118 135 102 chr12 20146468 20148112 -124134377 - pTR5 LTR ERV1 0 2438 741 347 227 18 64 chr12 20148723 20148833 -124133656 - L1MC4 LINE L1 -1339 6703 6599 23 54 0 0 chr12 20148946 20148983 -124133506 + AT_rich Low_complexity Low_complexity 1 37 0 305 280 13 0 chr12 20149491 20149566 -124132923 - L2 LINE L2 -252 3061 2986 219 254 16 0 chr12 20150821 20150884 -124131605 - L2 LINE L2 -1319 1995 1932 222 287 79 114 chr12 20151399 20151601 -124130888 + L2 LINE L2 3015 3209 -63 776 303 16 12 chr12 20152675 20152926 -124129563 - MIR SINE MIR -9 253 2 332 278 135 53 chr12 20152944 20153225 -124129264 + L1ME LINE L1 5379 5682 -439 704 257 122 14 chr12 20153425 20153647 -124128842 + MIR SINE MIR 3 248 -14 282 239 87 0 chr12 20153668 20153760 -124128729 + HAL1b LINE L1 1249 1348 0 189 0 0 0 chr12 20155999 20156020 -124126469 + (A)n Simple_repeat Simple_repeat 1 21 0 1602 178 22 0 chr12 20157640 20157810 -124124679 - AluJo SINE Alu -10 302 122 242 28 0 28 chr12 20157810 20157846 -124124643 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1602 178 22 0 chr12 20157846 20157951 -124124538 - AluJo SINE Alu -190 122 21 2019 137 3 19 chr12 20158673 20158987 -124123502 + AluSx SINE Alu 1 309 -3 2019 120 0 7 chr12 20159428 20159740 -124122749 - AluSx SINE Alu 0 310 1 298 284 46 9 chr12 20160505 20160614 -124121875 + MIR SINE MIR 73 185 -77 32 0 0 0 chr12 20161254 20161286 -124121203 + AT_rich Low_complexity Low_complexity 1 32 0 1995 82 22 0 chr12 20162681 20162950 -124119539 + AluSq SINE Alu 36 310 -3 1827 136 7 3 chr12 20163191 20163478 -124119011 - AluY SINE Alu -23 288 1 2164 97 24 0 chr12 20163543 20163831 -124118658 + AluSg1 SINE Alu 1 295 -14 41 21 0 0 chr12 20165089 20165137 -124117352 + AT_rich Low_complexity Low_complexity 1 48 0 820 124 18 0 chr12 20165151 20165264 -124117225 - FRAM SINE Alu -30 146 32 746 232 0 0 chr12 20165269 20165411 -124117078 + AluJb SINE Alu 129 270 -42 1658 144 0 0 chr12 20165435 20165678 -124116811 - AluSx SINE Alu -49 263 21 1203 146 25 93 chr12 20165679 20165959 -124116530 + Tigger3(Golem) DNA MER2_type 2762 3022 -7 300 183 0 56 chr12 20166144 20166215 -124116274 + L2 LINE L2 3176 3242 -71 228 59 0 0 chr12 20166216 20166250 -124116239 - MER44D DNA MER2_type -114 491 458 684 205 0 0 chr12 20166251 20166368 -124116121 + FLAM_C SINE Alu 1 117 -16 2339 160 26 33 chr12 20166378 20166797 -124115692 - MER44D DNA MER2_type -134 471 1 236 254 15 0 chr12 20166797 20166864 -124115625 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 614 223 0 0 chr12 20166911 20167023 -124115466 - MIR SINE MIR -140 122 11 849 194 68 10 chr12 20167133 20167339 -124115150 - MER20 DNA MER1_type 0 219 2 2119 125 6 0 chr12 20167503 20167814 -124114675 + AluSq SINE Alu 1 313 0 2073 134 3 6 chr12 20168324 20168637 -124113852 + AluSx SINE Alu 1 312 0 216 0 0 0 chr12 20168940 20168964 -124113525 + (A)n Simple_repeat Simple_repeat 1 24 0 2267 120 0 0 chr12 20170266 20170575 -124111914 - AluSx SINE Alu -3 309 1 2176 116 0 10 chr12 20170735 20171036 -124111453 + AluSq SINE Alu 1 298 -15 212 333 48 16 chr12 20171481 20171607 -124110882 + MIR SINE MIR 79 208 -54 1897 148 0 10 chr12 20171739 20172029 -124110460 + AluSx SINE Alu 1 287 -25 23 54 0 0 chr12 20172745 20172782 -124109707 + AT_rich Low_complexity Low_complexity 1 37 0 208 250 0 0 chr12 20173049 20173105 -124109384 + A-rich Low_complexity Low_complexity 1 56 0 453 248 50 30 chr12 20173300 20173502 -124108987 + L1MC/D LINE L1 5319 5524 -2284 215 245 0 0 chr12 20175217 20175270 -124107219 + T-rich Low_complexity Low_complexity 1 53 0 2045 133 3 16 chr12 20175743 20176059 -124106430 - AluSx SINE Alu 0 312 1 2035 116 3 36 chr12 20176269 20176572 -124105917 + AluJo SINE Alu 1 293 -19 1943 153 7 0 chr12 20176663 20176958 -124105531 + AluSx SINE Alu 1 297 -15 23 0 0 0 chr12 20176976 20176999 -124105490 + AT_rich Low_complexity Low_complexity 1 23 0 207 100 0 0 chr12 20177149 20177179 -124105310 + (T)n Simple_repeat Simple_repeat 1 30 0 2108 102 3 14 chr12 20177769 20178062 -124104427 + AluSq SINE Alu 1 290 -23 180 0 0 0 chr12 20178065 20178085 -124104404 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2236 94 0 17 chr12 20179417 20179733 -124102756 - AluSx SINE Alu 0 311 1 879 181 114 5 chr12 20179891 20180084 -124102405 + L1PA16 LINE L1 5951 6164 -2 26 82 0 0 chr12 20180278 20180339 -124102150 + AT_rich Low_complexity Low_complexity 1 61 0 623 323 48 36 chr12 20180354 20180605 -124101884 - MIR SINE MIR -1 261 8 202 232 188 14 chr12 20180738 20180807 -124101682 - MIR SINE MIR -39 169 88 598 260 46 40 chr12 20180908 20181081 -124101408 - LTR16A LTR ERVL -14 436 263 190 200 25 0 chr12 20181081 20181121 -124101368 - L2 LINE L2 -5 3267 3227 642 266 92 14 chr12 20181290 20181497 -124100992 - MIR SINE MIR -1 261 39 449 321 61 41 chr12 20182404 20182650 -124099839 - L2 LINE L2 -98 3215 2965 25 0 0 0 chr12 20183144 20183169 -124099320 + AT_rich Low_complexity Low_complexity 1 25 0 417 240 41 16 chr12 20183169 20183290 -124099199 + L1MC4 LINE L1 7784 7907 -135 1380 158 116 0 chr12 20183395 20183497 -124098992 + AluJb SINE Alu 3 92 -220 240 59 0 0 chr12 20183497 20183531 -124098958 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1380 158 116 0 chr12 20183531 20183687 -124098802 + AluJb SINE Alu 92 291 -21 1748 174 0 0 chr12 20183700 20183975 -124098514 + AluSx SINE Alu 5 279 -33 25 0 0 0 chr12 20183975 20184000 -124098489 + AT_rich Low_complexity Low_complexity 1 25 0 2014 123 0 7 chr12 20184570 20184854 -124097635 + AluSx SINE Alu 1 282 -30 2325 82 14 0 chr12 20184876 20185167 -124097322 + AluSp SINE Alu 1 295 -18 2341 102 3 0 chr12 20186302 20186605 -124095884 + AluSx SINE Alu 3 306 -6 25 0 0 0 chr12 20186703 20186728 -124095761 + AT_rich Low_complexity Low_complexity 1 25 0 1846 157 31 0 chr12 20188423 20188716 -124093773 + AluJb SINE Alu 1 302 -10 21 0 0 0 chr12 20188777 20188798 -124093691 + AT_rich Low_complexity Low_complexity 1 21 0 1587 193 7 7 chr12 20189651 20189974 -124092515 + AluJo SINE Alu 1 323 0 1914 141 3 10 chr12 20190099 20190403 -124092086 - AluSx SINE Alu -10 302 1 443 304 24 12 chr12 20191021 20191189 -124091300 - MIR SINE MIR -65 197 28 1563 193 7 14 chr12 20192677 20192973 -124089516 + AluJo SINE Alu 1 294 -18 232 353 146 27 chr12 20193027 20193288 -124089201 - L2 LINE L2 -17 3296 3005 1798 136 0 0 chr12 20193604 20193862 -124088627 + AluSx SINE Alu 2 259 -53 226 319 33 11 chr12 20193871 20193962 -124088527 - L2 LINE L2 -839 2475 2383 700 56 56 0 chr12 20193984 20194091 -124088398 + L1MA8 LINE L1 6169 6281 -10 299 304 31 0 chr12 20194112 20194261 -124088228 + L1ME LINE L1 5389 5549 -619 27 0 0 0 chr12 20195333 20195360 -124087129 + AT_rich Low_complexity Low_complexity 1 27 0 337 262 154 20 chr12 20196056 20196205 -124086284 + L3 LINE CR1 1064 1232 -345 2083 110 11 0 chr12 20196586 20196868 -124085621 + AluSx SINE Alu 12 296 -16 180 465 30 10 chr12 20196953 20197054 -124085435 - MIR3 SINE MIR -104 104 2 997 113 0 13 chr12 20197231 20197382 -124085107 - AluSg/x SINE Alu 0 312 164 588 129 148 0 chr12 20197505 20197606 -124084883 - FLAM_C SINE Alu -27 116 1 2009 118 70 0 chr12 20197994 20198281 -124084208 - AluSx SINE Alu -5 307 1 972 173 60 0 chr12 20198345 20198513 -124083976 + AluJb SINE Alu 121 298 -14 1810 145 28 3 chr12 20198571 20198861 -124083628 + AluSq SINE Alu 1 297 -16 2155 74 3 3 chr12 20199035 20199351 -124083138 - AluY SINE Alu 0 316 1 22 35 0 0 chr12 20199920 20199949 -124082540 + AT_rich Low_complexity Low_complexity 1 29 0 1308 104 0 6 chr12 20200183 20200443 -124082046 + AluSx SINE Alu 1 308 -4 23 0 0 0 chr12 20200525 20200548 -124081941 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr12 20201141 20201168 -124081321 + AT_rich Low_complexity Low_complexity 1 27 0 198 33 33 0 chr12 20201324 20201354 -124081135 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2092 131 0 0 chr12 20201354 20201638 -124080851 - AluSx SINE Alu -4 308 1 458 305 86 0 chr12 20202057 20202208 -124080281 + FAM SINE Alu 2 165 -10 4676 191 89 13 chr12 20202741 20203892 -124078597 + Charlie1a DNA MER1_type 1 1239 -216 277 137 0 39 chr12 20203875 20203926 -124078563 + Charlie1a DNA MER1_type 1406 1454 -1 * 2194 120 7 0 chr12 20203954 20204255 -124078234 + AluSx SINE Alu 1 303 -9 1964 123 3 20 chr12 20204279 20204572 -124077917 - AluSx SINE Alu -24 288 1 2495 79 3 0 chr12 20205065 20205370 -124077119 + AluSx SINE Alu 1 306 -6 1882 104 48 11 chr12 20207179 20207497 -124074992 - AluSg SINE Alu 0 330 3 22 35 0 0 chr12 20208475 20208504 -124073985 + AT_rich Low_complexity Low_complexity 1 29 0 1983 141 0 7 chr12 20209392 20209697 -124072792 + AluSx SINE Alu 1 303 -9 202 182 0 0 chr12 20209697 20209730 -124072759 + polypurine Low_complexity Low_complexity 1 33 0 2215 122 0 0 chr12 20209925 20210220 -124072269 + AluSx SINE Alu 1 295 -17 24 53 0 0 chr12 20210246 20210284 -124072205 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr12 20210586 20210609 -124071880 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr12 20211502 20211557 -124070932 + AT_rich Low_complexity Low_complexity 1 55 0 2145 109 0 26 chr12 20213219 20213523 -124068966 + AluSx SINE Alu 1 296 -16 2102 124 3 3 chr12 20213534 20213832 -124068657 + AluSx SINE Alu 1 298 -14 2815 13 0 0 chr12 20214610 20214920 -124067569 + AluYb8 SINE Alu 1 310 -8 26 0 0 0 chr12 20215013 20215039 -124067450 + AT_rich Low_complexity Low_complexity 1 26 0 2032 101 28 3 chr12 20215193 20215479 -124067010 + AluSx SINE Alu 1 293 -19 192 97 0 0 chr12 20215668 20215699 -124066790 + (T)n Simple_repeat Simple_repeat 1 31 0 1572 73 0 0 chr12 20215747 20215938 -124066551 - AluSq SINE Alu -122 191 1 27 0 0 0 chr12 20215987 20216014 -124066475 + AT_rich Low_complexity Low_complexity 1 27 0 280 295 83 26 chr12 20216860 20217016 -124065473 + MIR SINE MIR 86 250 -12 22 56 0 0 chr12 20217674 20217710 -124064779 + AT_rich Low_complexity Low_complexity 1 36 0 2193 86 3 51 chr12 20218122 20218435 -124064054 + AluSp SINE Alu 1 298 -15 1876 130 0 4 chr12 20219697 20219966 -124062523 - AluSx SINE Alu -44 268 1 701 180 180 0 chr12 20219992 20220164 -124062325 - MER3 DNA MER1_type -6 203 1 2083 115 0 0 chr12 20220179 20220457 -124062032 - AluSx SINE Alu 0 312 35 1850 158 3 7 chr12 20220752 20221044 -124061445 + 7SLRNA srpRNA srpRNA 5 295 -25 1904 126 48 3 chr12 20221085 20221378 -124061111 - AluJb SINE Alu -6 306 1 1714 100 71 0 chr12 20221409 20221649 -124060840 + AluSq SINE Alu 1 257 -56 744 154 0 0 chr12 20222082 20222199 -124060290 + AluJb SINE Alu 1 117 -195 2208 103 7 0 chr12 20222550 20222840 -124059649 + AluSg SINE Alu 5 296 -14 2152 116 0 13 chr12 20222840 20223151 -124059338 + AluSp SINE Alu 1 307 -6 1314 106 0 6 chr12 20223176 20223355 -124059134 + AluSg/x SINE Alu 112 289 -21 214 234 0 0 chr12 20223857 20223904 -124058585 + (CGG)n Simple_repeat Simple_repeat 3 49 0 1996 130 3 3 chr12 20224457 20224749 -124057740 + AluSq SINE Alu 1 292 -21 201 276 0 41 chr12 20225193 20225291 -124057198 + A-rich Low_complexity Low_complexity 2 95 0 2097 120 0 46 chr12 20226031 20226356 -124056133 + AluSx SINE Alu 1 310 -2 2138 80 38 3 chr12 20226742 20227031 -124055458 + AluSx SINE Alu 3 301 -11 2254 107 0 0 chr12 20227608 20227898 -124054591 + AluSx SINE Alu 14 303 -9 836 157 64 7 chr12 20227902 20228042 -124054447 + AluJo SINE Alu 1 148 -164 11933 127 42 7 chr12 20228057 20228419 -124054070 - Tigger1 DNA MER2_type -82 2336 1988 1582 165 25 59 chr12 20228419 20228740 -124053749 + AluJo SINE Alu 1 310 -2 11933 127 42 7 chr12 20228740 20230403 -124052086 - Tigger1 DNA MER2_type -430 1988 242 1502 143 5 5 chr12 20230403 20230627 -124051862 + AluJo SINE Alu 44 267 -45 21 0 0 0 chr12 20230705 20230726 -124051763 + AT_rich Low_complexity Low_complexity 1 21 0 307 229 95 24 chr12 20230727 20230858 -124051631 + L1ME2 LINE L1 5992 6134 -28 26 0 0 0 chr12 20231129 20231155 -124051334 + AT_rich Low_complexity Low_complexity 1 26 0 1457 176 70 33 chr12 20234354 20234626 -124047863 + AluJo SINE Alu 1 282 -30 207 0 0 0 chr12 20235191 20235214 -124047275 + (T)n Simple_repeat Simple_repeat 1 23 0 2166 110 14 0 chr12 20235910 20236202 -124046287 + AluSx SINE Alu 1 296 -16 25 75 0 32 chr12 20237712 20237805 -124044684 + AT_rich Low_complexity Low_complexity 1 90 0 1957 153 3 0 chr12 20238154 20238449 -124044040 + AluSx SINE Alu 1 296 -16 1920 138 9 34 chr12 20238621 20238941 -124043548 - AluSx SINE Alu 0 312 1 1544 174 17 51 chr12 20240139 20240432 -124042057 - AluJo SINE Alu -29 283 1 1803 129 76 0 chr12 20240512 20240775 -124041714 + AluSq SINE Alu 3 285 -28 2290 112 7 0 chr12 20240805 20241110 -124041379 + AluSx SINE Alu 1 307 -5 280 301 14 0 chr12 20241731 20241804 -124040685 - MIR SINE MIR -96 112 39 1693 177 32 0 chr12 20242380 20242662 -124039827 + AluJo SINE Alu 2 292 -20 2346 82 0 0 chr12 20242677 20242970 -124039519 + AluSg SINE Alu 1 293 -17 2181 92 7 0 chr12 20242999 20243333 -124039156 + AluSp SINE Alu 4 339 0 199 352 0 0 chr12 20243550 20243604 -124038885 + L2 LINE L2 3211 3264 -8 5221 123 43 18 chr12 20243841 20244901 -124037588 - L1PA16 LINE L1 0 6166 5108 2155 147 0 0 chr12 20244901 20245213 -124037276 - AluSx SINE Alu 0 312 1 7697 200 29 4 chr12 20245222 20245827 -124036662 - L1 LINE L1 -1114 5032 4443 360 0 0 0 chr12 20245827 20245867 -124036622 + (TG)n Simple_repeat Simple_repeat 2 41 0 7697 200 29 4 chr12 20245867 20247060 -124035429 - L1 LINE L1 -1703 4443 3190 1262 169 147 52 chr12 20247068 20247340 -124035149 + AluJb SINE Alu 6 303 -9 25 0 0 0 chr12 20247839 20247864 -124034625 + AT_rich Low_complexity Low_complexity 1 25 0 830 142 0 8 chr12 20248646 20248773 -124033716 - FLAM_C SINE Alu -7 126 1 1339 212 26 11 chr12 20249009 20249278 -124033211 + AluJb SINE Alu 1 273 -39 1639 158 91 0 chr12 20249285 20249550 -124032939 + AluJo SINE Alu 1 289 -23 753 174 0 56 chr12 20249733 20249894 -124032595 - FAM SINE Alu -2 47 1 261 157 182 91 chr12 20249905 20249950 -124032539 - L1ME3A LINE L1 -198 5972 5932 1669 167 51 0 chr12 20249950 20250225 -124032264 - AluJb SINE Alu -23 289 1 261 157 182 91 chr12 20250225 20250300 -124032189 - L1ME3A LINE L1 -238 5932 5841 1997 82 0 0 chr12 20250321 20250566 -124031923 + AluSp SINE Alu 50 294 -19 1854 128 0 44 chr12 20250566 20250864 -124031625 + AluSc SINE Alu 1 285 -24 2207 116 0 7 chr12 20250875 20251178 -124031311 - AluSg SINE Alu -9 301 1 789 155 0 165 chr12 20251970 20252099 -124030390 + AluJb SINE Alu 3 89 -223 360 0 0 0 chr12 20252099 20252139 -124030350 + (TA)n Simple_repeat Simple_repeat 2 41 0 789 155 0 165 chr12 20252139 20252209 -124030280 + AluJb SINE Alu 89 169 -143 180 0 0 0 chr12 20252253 20252273 -124030216 + (A)n Simple_repeat Simple_repeat 1 20 0 1932 136 13 13 chr12 20252293 20252602 -124029887 - AluJo SINE Alu -3 309 1 1744 123 3 58 chr12 20252671 20252964 -124029525 - AluSg SINE Alu 0 310 34 1519 166 0 0 chr12 20252965 20253200 -124029289 - AluSx SINE Alu -76 236 2 289 250 179 0 chr12 20254009 20254093 -124028396 - L3 LINE CR1 -118 1459 1361 1424 64 0 0 chr12 20254246 20254417 -124028072 - AluSp SINE Alu -2 311 141 232 211 44 111 chr12 20254502 20254540 -124027949 + MIR SINE MIR 120 159 -103 2302 109 13 0 chr12 20254540 20254843 -124027646 + AluSx SINE Alu 1 307 -5 232 211 44 111 chr12 20254843 20254894 -124027595 + MIR SINE MIR 159 203 -59 408 59 15 73 chr12 20255009 20255077 -124027412 + AluSp SINE Alu 76 139 -174 1730 100 12 0 chr12 20255078 20255318 -124027171 + AluSq SINE Alu 58 300 -13 431 233 47 47 chr12 20255347 20255476 -124027013 + MER3 DNA MER1_type 38 166 -43 736 182 29 112 chr12 20255481 20255607 -124026882 - AluJo/FRAM SINE Alu -21 291 181 1801 138 46 3 chr12 20255607 20255889 -124026600 + AluSx SINE Alu 1 294 -18 736 182 29 112 chr12 20255889 20255932 -124026557 - AluJo/FRAM SINE Alu -131 181 136 294 130 22 0 chr12 20255934 20255980 -124026509 + MER3 DNA MER1_type 157 203 -6 1006 133 7 0 chr12 20256024 20256174 -124026315 + AluSg/x SINE Alu 154 304 -8 231 91 61 0 chr12 20256238 20256271 -124026218 - MER58 DNA MER1_type -1 2419 2385 2266 110 0 16 chr12 20256292 20256610 -124025879 - AluSq SINE Alu 0 313 1 290 207 0 17 chr12 20256618 20256676 -124025813 - MER58 DNA MER1_type -2327 93 37 363 289 69 47 chr12 20256759 20256991 -124025498 + L1 LINE L1 4488 4724 -1422 475 261 62 12 chr12 20257018 20257179 -124025310 + MIR SINE MIR 89 257 -5 275 147 200 0 chr12 20257194 20257269 -124025220 + L1 LINE L1 4736 4825 -1321 5436 30 9 20 chr12 20257594 20258233 -124024256 + SVA Other Other 755 1386 0 1877 160 3 19 chr12 20258257 20258569 -124023920 + AluSx SINE Alu 1 307 -5 232 282 35 12 chr12 20258571 20258656 -124023833 + L1ME LINE L1 5390 5476 -645 1750 180 3 3 chr12 20259002 20259297 -124023192 - AluJb SINE Alu -17 295 1 1933 101 4 0 chr12 20259639 20259887 -124022602 + AluSx SINE Alu 1 249 -63 1025 136 51 11 chr12 20259887 20260064 -124022425 + AluSg/x SINE Alu 120 303 -7 24 0 0 0 chr12 20260503 20260527 -124021962 + AT_rich Low_complexity Low_complexity 1 24 0 1664 129 39 126 chr12 20260743 20261035 -124021454 - MER7A DNA MER2_type -2692 346 95 2096 125 10 0 chr12 20261035 20261331 -124021158 + AluSx SINE Alu 1 299 -13 1664 129 39 126 chr12 20261331 20261419 -124021070 - MER7A DNA MER2_type -2943 95 1 430 290 88 59 chr12 20261648 20261989 -124020500 - L1ME4a LINE L1 -269 5852 5502 1701 115 59 48 chr12 20262091 20262361 -124020128 + AluSx SINE Alu 1 273 -39 215 91 0 23 chr12 20262371 20262382 -124020107 + (TAAAAA)n Simple_repeat Simple_repeat 4 14 -32 2388 97 0 0 chr12 20262382 20262692 -124019797 + AluSx SINE Alu 1 310 -2 215 91 0 23 chr12 20262692 20262724 -124019765 + (TAAAAA)n Simple_repeat Simple_repeat 14 46 0 2109 118 10 3 chr12 20262746 20263042 -124019447 + AluSx SINE Alu 1 298 -14 23 33 0 0 chr12 20263233 20263263 -124019226 + AT_rich Low_complexity Low_complexity 1 30 0 1605 127 71 19 chr12 20263622 20263890 -124018599 + AluJo SINE Alu 1 282 -30 38 0 0 0 chr12 20264632 20264670 -124017819 + AT_rich Low_complexity Low_complexity 1 38 0 2258 112 7 3 chr12 20265144 20265448 -124017041 - AluSx SINE Alu -7 305 1 184 151 38 75 chr12 20265601 20265654 -124016835 + MER5C DNA MER1_type 90 140 -184 432 262 90 0 chr12 20265889 20266034 -124016455 - MER46C DNA MER2_type -8 330 173 1221 117 6 6 chr12 20266063 20266243 -124016246 + AluSg/x SINE Alu 117 296 -14 1463 212 19 19 chr12 20266318 20266679 -124015810 - AluJb SINE Alu 0 312 3 573 92 0 0 chr12 20266891 20266967 -124015522 + AluSx SINE Alu 2 77 -235 231 36 0 0 chr12 20266969 20266997 -124015492 + (CAA)n Simple_repeat Simple_repeat 1 28 0 441 58 0 0 chr12 20267043 20267095 -124015394 + AluSx SINE Alu 82 133 -177 2087 123 0 3 chr12 20267096 20267388 -124015101 + AluSg SINE Alu 1 291 -19 233 231 224 20 chr12 20267506 20267653 -124014836 + L1MC4 LINE L1 7775 7951 -91 2042 104 26 23 chr12 20267750 20268059 -124014430 + AluSg SINE Alu 1 310 0 1584 138 106 4 chr12 20268221 20268496 -124013993 - AluJb SINE Alu -9 303 1 809 161 0 0 chr12 20268515 20268633 -124013856 + FLAM_C SINE Alu 1 118 -25 342 197 15 15 chr12 20268840 20268906 -124013583 + AluJb SINE Alu 213 278 -24 2029 99 3 27 chr12 20269086 20269380 -124013109 + AluSp SINE Alu 18 304 -9 1865 159 10 13 chr12 20269384 20269685 -124012804 + AluJb SINE Alu 1 300 -12 827 129 38 30 chr12 20269866 20269998 -124012491 - FLAM_C SINE Alu 0 133 1 1554 158 44 44 chr12 20270058 20270356 -124012133 - AluJb SINE Alu 0 312 15 2049 126 3 10 chr12 20270419 20270739 -124011750 - AluSx SINE Alu 0 312 1 2224 88 10 3 chr12 20270745 20271041 -124011448 - AluSp SINE Alu -15 298 1 2689 26 0 7 chr12 20271423 20271731 -124010758 - AluY SINE Alu -1 310 5 2417 68 0 7 chr12 20271768 20272064 -124010425 - AluY SINE Alu -17 294 1 1228 165 0 39 chr12 20272627 20272857 -124009632 - AluJo SINE Alu -7 305 85 2131 128 0 13 chr12 20273161 20273466 -124009023 + AluSx SINE Alu 1 301 -11 1682 182 19 16 chr12 20273515 20273823 -124008666 + AluJo SINE Alu 1 309 -3 619 159 37 9 chr12 20273829 20273936 -124008553 - Tigger2 DNA MER2_type -228 2490 2381 2304 89 20 0 chr12 20273939 20274241 -124008248 - AluSg SINE Alu -2 308 1 1971 129 41 7 chr12 20274534 20274828 -124007661 - AluSx SINE Alu -8 304 1 261 0 0 0 chr12 20274901 20274930 -124007559 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1755 134 0 39 chr12 20274938 20275222 -124007267 - AluJb SINE Alu -39 273 1 2464 58 0 22 chr12 20276964 20277276 -124005213 + AluY SINE Alu 1 305 -6 1267 157 51 13 chr12 20277332 20277567 -124004922 + AluJb SINE Alu 1 244 -68 1971 137 13 10 chr12 20277610 20277917 -124004572 + AluSx SINE Alu 4 311 -1 2063 105 11 21 chr12 20279752 20280037 -124002452 - AluSx SINE Alu -30 282 1 22 70 0 0 chr12 20280398 20280441 -124002048 + AT_rich Low_complexity Low_complexity 1 43 0 535 195 26 45 chr12 20280994 20281148 -124001341 - AluSg/x SINE Alu 0 310 160 2424 78 0 3 chr12 20281863 20282169 -124000320 + AluY SINE Alu 1 305 -6 515 329 0 22 chr12 20282618 20282755 -123999734 + MIR3 SINE MIR 11 144 -64 1610 249 133 53 chr12 20283708 20283869 -123998620 + L1M4c LINE L1 892 1039 -5345 2064 133 0 7 chr12 20283869 20284163 -123998326 - AluJo SINE Alu -18 294 3 1610 249 133 53 chr12 20284163 20284857 -123997632 + L1M4c LINE L1 1039 1816 -4568 477 219 123 0 chr12 20284973 20285087 -123997402 - MER58A DNA MER1_type 0 128 1 466 319 156 27 chr12 20285122 20285527 -123996962 - L3 LINE CR1 -477 1100 644 613 133 0 51 chr12 20285577 20285675 -123996814 + AluJ/FLAM SINE Alu 3 95 -217 1901 100 65 7 chr12 20285684 20285974 -123996515 - AluSx SINE Alu -1 311 5 1902 136 40 31 chr12 20285976 20286299 -123996190 - THE1B LTR MaLR -38 326 1 757 271 78 18 chr12 20286395 20286676 -123995813 + MLT1C LTR MaLR 168 465 -2 188 278 175 0 chr12 20286694 20286791 -123995698 - L2 LINE L2 -209 3104 2991 706 144 117 0 chr12 20287499 20287610 -123994879 + FLAM_A SINE Alu 4 127 -6 524 157 8 104 chr12 20287906 20288040 -123994449 + L2 LINE L2 3191 3311 -2 21 0 0 0 chr12 20288116 20288137 -123994352 + AT_rich Low_complexity Low_complexity 1 21 0 189 279 22 0 chr12 20288365 20288432 -123994057 - MIR SINE MIR -102 106 38 1898 152 14 0 chr12 20289706 20290002 -123992487 - AluJo SINE Alu -8 304 5 1592 156 17 21 chr12 20290765 20291053 -123991436 - MER1B DNA MER1_type -18 321 35 844 181 110 16 chr12 20291068 20291250 -123991239 - MER7A DNA MER2_type -149 197 1 193 354 0 0 chr12 20291260 20291308 -123991181 + L2 LINE L2 3210 3257 -15 2273 107 0 0 chr12 20291646 20291946 -123990543 + AluSq SINE Alu 6 305 -8 778 116 126 0 chr12 20292404 20292594 -123989895 + AluY SINE Alu 79 292 -19 424 293 89 19 chr12 20293271 20293541 -123988948 - L1MC4a LINE L1 -1871 5937 5649 301 234 70 63 chr12 20293577 20293661 -123988828 - L1MC4a LINE L1 -709 5461 5374 2189 125 3 0 chr12 20293661 20293966 -123988523 - AluSq SINE Alu -7 306 1 301 234 70 63 chr12 20293966 20294039 -123988450 - L1MC4a LINE L1 -796 5374 5303 467 116 0 109 chr12 20296171 20296309 -123986180 - AluSc SINE Alu -52 257 135 2135 112 34 0 chr12 20296313 20296608 -123985881 - AluSq SINE Alu -8 305 1 980 133 7 0 chr12 20296608 20296759 -123985730 - L1MC1 LINE L1 -162 6171 6020 2029 86 0 15 chr12 20296774 20297042 -123985447 + AluSq SINE Alu 35 298 -15 1275 230 14 0 chr12 20297042 20297338 -123985151 - L1MC4a LINE L1 -991 5155 4856 1208 213 32 29 chr12 20297369 20297646 -123984843 + AluJo SINE Alu 5 282 -30 2082 103 47 20 chr12 20297646 20297947 -123984542 - AluSg SINE Alu -1 309 1 531 271 16 0 chr12 20297953 20298082 -123984407 - FLAM_C SINE Alu -2 131 1 2218 67 3 3 chr12 20298314 20298630 -123983859 - AluY SINE Alu 0 316 1 669 274 12 75 chr12 20298900 20299036 -123983453 + MIR SINE MIR 15 158 -104 1916 158 20 10 chr12 20299036 20299339 -123983150 + AluJo SINE Alu 1 306 -6 669 274 12 75 chr12 20299339 20299399 -123983090 + MIR SINE MIR 158 194 -68 2196 134 0 0 chr12 20299399 20299706 -123982783 + AluSx SINE Alu 1 307 -5 669 274 12 75 chr12 20299706 20299760 -123982729 + MIR SINE MIR 194 250 -12 978 136 0 73 chr12 20299773 20299950 -123982539 + AluJb SINE Alu 149 312 0 269 150 0 0 chr12 20300037 20300077 -123982412 - MER2 DNA MER2_type 0 345 306 431 205 0 13 chr12 20300092 20300170 -123982319 - MER2 DNA MER2_type -247 98 22 1984 96 3 99 chr12 20300270 20300614 -123981875 - AluY SINE Alu 0 311 1 2387 101 0 0 chr12 20300641 20300939 -123981550 - AluSx SINE Alu -14 298 1 509 156 117 83 chr12 20301140 20301345 -123981144 + L1MC5 LINE L1 6921 7132 -829 1915 149 0 10 chr12 20301373 20301668 -123980821 + AluSx SINE Alu 1 292 -20 566 217 63 32 chr12 20301951 20302172 -123980317 + AluY SINE Alu 68 295 -16 350 217 85 0 chr12 20302348 20302454 -123980035 + L1MC5 LINE L1 7539 7653 -308 2187 91 3 7 chr12 20303171 20303467 -123979022 + AluSg1 SINE Alu 1 295 -14 1374 134 119 15 chr12 20303813 20304082 -123978407 - AluSg1 SINE Alu -12 297 1 2116 100 37 0 chr12 20304152 20304451 -123978038 - AluSx SINE Alu -2 310 1 2056 80 7 31 chr12 20304464 20304782 -123977707 - AluY SINE Alu 0 311 1 53 30 0 0 chr12 20304965 20305032 -123977457 + AT_rich Low_complexity Low_complexity 1 67 0 1336 181 19 37 chr12 20305105 20305375 -123977114 + AluJo SINE Alu 1 265 -47 1407 83 10 5 chr12 20305475 20305668 -123976821 + AluSp SINE Alu 98 291 -22 1923 157 0 0 chr12 20305878 20306202 -123976287 - AluSx SINE Alu 0 312 1 604 164 0 29 chr12 20306290 20306394 -123976095 + AluSq/x SINE Alu 26 126 -186 1102 194 57 4 chr12 20307556 20307804 -123974685 - AluJo SINE Alu 0 312 52 1760 139 26 35 chr12 20307864 20308174 -123974315 - AluJb SINE Alu -5 307 1 4688 101 24 24 chr12 20308195 20308869 -123973620 - L1PB2 LINE L1 -1 6150 5474 2096 83 31 0 chr12 20308869 20309157 -123973332 - AluSc SINE Alu -12 297 1 4688 101 24 24 chr12 20309157 20309202 -123973287 - L1PB2 LINE L1 -676 5475 5431 739 155 0 62 chr12 20309206 20309367 -123973122 - L1PB2 LINE L1 -787 5359 5209 1666 167 26 7 chr12 20309629 20309935 -123972554 - AluJb SINE Alu 0 312 1 1961 112 0 4 chr12 20309989 20310265 -123972224 + AluSx SINE Alu 25 299 -13 2041 90 38 0 chr12 20310266 20310554 -123971935 + AluSp SINE Alu 3 301 -12 609 98 19 2 chr12 20311123 20311219 -123971270 - LTR17 LTR ERV1 -354 360 247 2139 95 0 3 chr12 20311248 20311542 -123970947 + AluSc SINE Alu 1 293 -16 1990 115 3 3 chr12 20311542 20311829 -123970660 + AluSx SINE Alu 1 287 -25 1976 134 7 0 chr12 20311911 20312203 -123970286 + AluSx SINE Alu 1 294 -18 21 0 0 0 chr12 20312734 20312755 -123969734 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 20312858 20312887 -123969602 + AT_rich Low_complexity Low_complexity 1 29 0 335 307 80 29 chr12 20313365 20313502 -123968987 - MIR3 SINE MIR -27 181 38 1873 113 0 65 chr12 20314237 20314429 -123968060 - AluSg SINE Alu 0 300 156 1886 94 0 11 chr12 20314429 20314583 -123967906 - AluSc SINE Alu -24 285 134 2353 77 0 3 chr12 20314583 20314893 -123967596 - AluY SINE Alu -2 309 1 1886 94 0 11 chr12 20314893 20315003 -123967486 - AluSc SINE Alu -175 134 24 1873 113 0 65 chr12 20315003 20315150 -123967339 - AluSg SINE Alu -144 156 1 1932 122 31 0 chr12 20315369 20315655 -123966834 + AluSx SINE Alu 4 298 -14 556 170 21 112 chr12 20316071 20316113 -123966376 - Charlie2 DNA MER1_type -13 2849 2805 1740 176 0 13 chr12 20316113 20316419 -123966070 + AluJb SINE Alu 1 302 -10 556 170 21 112 chr12 20316419 20316491 -123965998 - Charlie2 DNA MER1_type -57 2805 2728 2067 129 3 0 chr12 20316491 20316800 -123965689 + AluSq SINE Alu 1 310 -3 556 170 21 112 chr12 20316800 20316835 -123965654 - Charlie2 DNA MER1_type -134 2728 2717 1963 139 0 3 chr12 20316835 20317136 -123965353 - AluSx SINE Alu -12 300 1 556 170 21 112 chr12 20317136 20317172 -123965317 - Charlie2 DNA MER1_type -145 2717 2679 1955 126 0 7 chr12 20317172 20317480 -123965009 - AluSq SINE Alu 0 306 1 1977 95 74 0 chr12 20317856 20318139 -123964350 + AluSp SINE Alu 1 304 -9 1628 152 29 0 chr12 20318352 20318648 -123963841 - AluJb SINE Alu 0 304 1 23 54 0 0 chr12 20318881 20318918 -123963571 + AT_rich Low_complexity Low_complexity 1 37 0 611 293 60 28 chr12 20319309 20319446 -123963043 + MIR SINE MIR 6 156 -106 1689 171 109 50 chr12 20319446 20319850 -123962639 - MSTC LTR MaLR 0 428 1 611 293 60 28 chr12 20319850 20319961 -123962528 + MIR SINE MIR 156 262 0 23 33 0 0 chr12 20320040 20320070 -123962419 + AT_rich Low_complexity Low_complexity 1 30 0 2437 35 0 0 chr12 20320246 20320535 -123961954 + AluY SINE Alu 1 289 -22 728 252 129 31 chr12 20321058 20321344 -123961145 + L1ME4a LINE L1 5344 5657 -2151 1479 109 154 16 chr12 20321424 20321708 -123960781 + AluJb SINE Alu 4 321 0 395 139 139 0 chr12 20321926 20322005 -123960484 + MER21B LTR ERV1 1 90 -773 809 190 0 50 chr12 20322006 20322185 -123960304 - AluJo SINE Alu -24 288 119 357 300 42 0 chr12 20322196 20322316 -123960173 - L1M4 LINE L1 -2949 3197 3073 813 152 8 0 chr12 20322347 20322479 -123960010 - FLAM_C SINE Alu -2 141 9 2703 204 133 25 chr12 20322488 20323159 -123959330 + MER21B LTR ERV1 85 827 -36 250 234 16 16 chr12 20323172 20323236 -123959253 - MLT1J2 LTR MaLR -315 135 72 352 305 184 5 chr12 20323350 20323573 -123958916 + L1ME4a LINE L1 5736 5998 -123 2356 56 0 16 chr12 20324236 20324540 -123957949 - AluY SINE Alu -12 299 1 817 195 16 5 chr12 20325053 20325238 -123957251 - AluSg/x SINE Alu -1 311 125 346 128 13 103 chr12 20325388 20325466 -123957023 + L1MC1 LINE L1 6156 6226 -107 2761 121 22 75 chr12 20325468 20325580 -123956909 + LTR39 LTR ERV1 1 117 -666 2202 91 3 3 chr12 20325580 20325889 -123956600 + AluSc SINE Alu 1 309 0 2761 121 22 75 chr12 20325889 20325977 -123956512 + LTR39 LTR ERV1 117 208 -575 1894 114 27 7 chr12 20325977 20326275 -123956214 + AluSx SINE Alu 3 306 -6 2761 121 22 75 chr12 20326275 20326579 -123955910 + LTR39 LTR ERV1 208 479 -304 5247 238 49 32 chr12 20326592 20327242 -123955247 + L1PBa LINE L1 3 640 -6223 2147 66 11 0 chr12 20327242 20327529 -123954960 - AluY SINE Alu -21 290 1 5247 238 49 32 chr12 20327529 20329390 -123953099 + L1PBa LINE L1 640 2467 -4396 1327 169 0 99 chr12 20329390 20329547 -123952942 + AluJb SINE Alu 1 109 -221 2156 113 10 0 chr12 20329547 20329856 -123952633 + AluSx SINE Alu 1 312 0 1327 169 0 99 chr12 20329856 20330059 -123952430 + AluJb SINE Alu 109 330 0 1155 181 60 63 chr12 20330068 20330396 -123952093 + AluJb SINE Alu 5 302 0 5247 238 49 32 chr12 20330396 20330421 -123952068 + L1PBa LINE L1 1628 1651 -5212 2042 109 20 0 chr12 20330425 20330719 -123951770 + AluSg SINE Alu 1 300 -10 2019 104 0 14 chr12 20330721 20331010 -123951479 + AluSx SINE Alu 1 285 -27 315 0 0 0 chr12 20331010 20331045 -123951444 + (CA)n Simple_repeat Simple_repeat 2 36 0 2252 91 7 7 chr12 20331680 20331988 -123950501 + AluSq SINE Alu 1 308 -5 1369 194 0 38 chr12 20332544 20332858 -123949631 - AluJo SINE Alu -10 302 1 1419 152 35 48 chr12 20332924 20333085 -123949404 - AluSx SINE Alu -12 300 138 231 36 0 0 chr12 20333085 20333113 -123949376 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 243 0 0 0 chr12 20333112 20333139 -123949350 + (CA)n Simple_repeat Simple_repeat 2 28 0 1419 152 35 48 chr12 20333113 20333266 -123949223 - AluSx SINE Alu -174 138 16 960 179 0 0 chr12 20333598 20333771 -123948718 - FRAM SINE Alu -9 167 1 1728 130 56 18 chr12 20333775 20333939 -123948550 - AluSq SINE Alu -17 296 140 315 0 0 0 chr12 20333939 20333974 -123948515 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2091 93 4 0 chr12 20333974 20334254 -123948235 - AluSp SINE Alu -31 282 2 1728 130 56 18 chr12 20334254 20334373 -123948116 - AluSq SINE Alu -172 141 1 506 254 18 0 chr12 20334406 20334520 -123947969 + FLAM_C SINE Alu 3 118 -25 2183 87 0 10 chr12 20334572 20334871 -123947618 - AluSc SINE Alu -13 296 1 706 193 0 57 chr12 20334886 20335026 -123947463 - FLAM_C SINE Alu 0 133 2 1971 128 0 3 chr12 20335170 20335475 -123947014 - AluSx SINE Alu 0 304 1 2215 108 0 0 chr12 20335857 20336164 -123946325 + AluSg SINE Alu 1 307 -3 833 196 6 18 chr12 20336219 20336387 -123946102 - FRAM SINE Alu 0 166 1 215 226 194 0 chr12 20336492 20336554 -123945935 - L2 LINE L2 -5 3267 3194 182 304 101 0 chr12 20336652 20336731 -123945758 - L2 LINE L2 -214 3058 2972 2328 63 0 10 chr12 20336820 20337121 -123945368 - AluY SINE Alu -13 298 1 28 0 0 0 chr12 20337121 20337149 -123945340 + AT_rich Low_complexity Low_complexity 1 28 0 2064 129 0 0 chr12 20337165 20337475 -123945014 - AluSx SINE Alu -2 310 1 1422 139 24 103 chr12 20337571 20337910 -123944579 - L1MB5 LINE L1 -3 6171 5860 293 185 15 0 chr12 20337918 20337983 -123944506 + CT-rich Low_complexity Low_complexity 2 67 0 378 127 0 0 chr12 20338007 20338062 -123944427 - Alu SINE Alu -246 55 1 339 307 34 80 chr12 20338197 20338373 -123944116 - L1ME3A LINE L1 -242 5928 5761 2257 103 3 0 chr12 20338419 20338731 -123943758 + AluSp SINE Alu 1 313 0 1800 124 0 4 chr12 20338737 20339003 -123943486 + AluY SINE Alu 3 267 -44 1284 178 4 32 chr12 20339028 20339281 -123943208 + AluJo SINE Alu 46 291 -21 2277 84 3 0 chr12 20339292 20339589 -123942900 + AluSp SINE Alu 1 298 -15 762 241 24 12 chr12 20339593 20339763 -123942726 - MER5A DNA MER1_type -9 180 9 272 258 129 106 chr12 20339902 20340086 -123942403 - LTR33 LTR ERVL -152 369 176 2207 68 0 0 chr12 20340086 20340365 -123942124 - AluY SINE Alu -6 305 27 272 258 129 106 chr12 20340365 20340435 -123942054 - LTR33 LTR ERVL -345 176 109 2231 192 38 38 chr12 20340435 20340681 -123941808 + Charlie1b DNA MER1_type 1 246 -2515 880 104 0 22 chr12 20340681 20340816 -123941673 + FLAM_C SINE Alu 2 133 0 2231 192 38 38 chr12 20340816 20341090 -123941399 + Charlie1b DNA MER1_type 245 521 -2 308 233 105 0 chr12 20341092 20341178 -123941311 - LTR33 LTR ERVL -426 95 1 1076 183 13 22 chr12 20341180 20341404 -123941085 + AluJb SINE Alu 85 306 -6 285 29 0 0 chr12 20341467 20341501 -123940988 + (TG)n Simple_repeat Simple_repeat 1 34 0 2074 100 0 0 chr12 20341501 20341780 -123940709 - AluSq SINE Alu -33 280 2 2360 58 0 0 chr12 20341790 20342085 -123940404 - AluY SINE Alu -16 295 1 2247 91 3 0 chr12 20342116 20342413 -123940076 - AluSp SINE Alu -15 298 1 384 318 14 34 chr12 20342418 20342566 -123939923 - MER5C DNA MER1_type -169 155 11 771 142 122 14 chr12 20343073 20343221 -123939268 - AluJb SINE Alu -15 297 134 1308 152 171 12 chr12 20343221 20343478 -123939011 - AluSc SINE Alu -1 298 1 230 152 0 0 chr12 20343771 20343804 -123938685 + L2 LINE L2 3204 3236 -36 2068 149 159 69 chr12 20343808 20343866 -123938623 + MER39 LTR ERV1 1 52 -655 4138 130 13 3 chr12 20343866 20344495 -123937994 + MER41B LTR ERV1 1 635 0 2068 149 159 69 chr12 20344495 20344512 -123937977 + MER39 LTR ERV1 52 66 -641 1566 152 18 79 chr12 20344512 20344842 -123937647 - AluJb SINE Alu -2 310 1 2068 149 159 69 chr12 20344842 20345363 -123937126 + MER39 LTR ERV1 66 686 -21 963 186 145 9 chr12 20345363 20345584 -123936905 - AluSg SINE Alu -59 251 1 759 248 28 64 chr12 20345817 20346099 -123936390 + Charlie2 DNA MER1_type 37 308 -2554 2227 187 206 30 chr12 20346104 20346950 -123935539 + Charlie2 DNA MER1_type 1864 2858 -4 230 153 17 0 chr12 20347318 20347377 -123935112 + G-rich Low_complexity Low_complexity 3 62 0 195 69 0 0 chr12 20347603 20347632 -123934857 + (GGA)n Simple_repeat Simple_repeat 1 29 0 240 186 0 0 chr12 20347746 20347789 -123934700 + GA-rich Low_complexity Low_complexity 2 44 0 216 111 0 0 chr12 20347817 20347853 -123934636 + (CGG)n Simple_repeat Simple_repeat 1 36 0 195 261 29 14 chr12 20349052 20349121 -123933368 - L2 LINE L2 -1078 2236 2167 345 279 117 56 chr12 20349780 20349959 -123932530 - MIR SINE MIR -12 250 61 2132 82 3 3 chr12 20350032 20350323 -123932166 + AluSx SINE Alu 1 291 -21 1919 114 10 7 chr12 20351004 20351294 -123931195 - AluSx SINE Alu -13 299 9 541 108 0 0 chr12 20351343 20351417 -123931072 + AluS SINE Alu 2 75 -238 1787 161 0 7 chr12 20351526 20351825 -123930664 - AluSx SINE Alu -15 297 1 1781 170 0 0 chr12 20352228 20352517 -123929972 - AluJb SINE Alu -23 289 1 190 297 68 27 chr12 20353158 20353232 -123929257 - MIR3 SINE MIR 0 208 132 1376 166 147 4 chr12 20353896 20354039 -123928450 - AluJb SINE Alu -8 304 183 9396 41 1 0 chr12 20354039 20355952 -123926537 + L1PA4 LINE L1 4241 6154 -1 1376 166 147 4 chr12 20355952 20356073 -123926416 - AluJb SINE Alu -129 183 2 1639 97 0 9 chr12 20356239 20356455 -123926034 + AluSp SINE Alu 85 298 -15 1953 99 74 14 chr12 20356663 20356946 -123925543 + AluSx SINE Alu 1 300 -12 2163 106 0 20 chr12 20357008 20357347 -123925142 + AluSg SINE Alu 1 310 0 245 174 0 0 chr12 20359043 20359089 -123923400 + L2 LINE L2 3267 3312 -1 500 200 44 15 chr12 20359897 20360032 -123922457 + MIR SINE MIR 124 262 0 330 281 170 0 chr12 20360405 20360558 -123921931 + MER91A DNA MER1_type 18 196 0 2254 113 0 13 chr12 20360649 20360960 -123921529 - AluSc SINE Alu -2 307 1 183 42 0 0 chr12 20360968 20360992 -123921497 + (TTA)n Simple_repeat Simple_repeat 1 24 0 701 147 0 0 chr12 20360993 20361095 -123921394 - FLAM_C SINE Alu -20 123 22 883 98 8 0 chr12 20361106 20361238 -123921251 - MER41B LTR ERV1 0 635 503 3375 74 7 35 chr12 20361964 20362266 -123920223 - MER41A LTR ERV1 -106 448 162 2210 114 7 0 chr12 20362266 20362572 -123919917 - AluSg SINE Alu -2 308 1 3375 74 7 35 chr12 20362572 20362730 -123919759 - MER41A LTR ERV1 -392 162 1 640 241 76 0 chr12 20362862 20363020 -123919469 + MER96 DNA MER1_type 2 171 -4 1736 139 0 0 chr12 20363079 20363317 -123919172 + AluSx SINE Alu 59 296 -16 1790 151 30 26 chr12 20363416 20363720 -123918769 + AluSx SINE Alu 1 305 -7 639 0 0 0 chr12 20364039 20364110 -123918379 + (CAATA)n Simple_repeat Simple_repeat 1 71 0 1606 193 25 0 chr12 20364300 20364574 -123917915 + AluJb SINE Alu 1 281 -31 192 40 0 0 chr12 20364578 20364603 -123917886 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1748 90 5 0 chr12 20364794 20365017 -123917472 - AluSq SINE Alu -8 305 82 829 134 0 0 chr12 20365017 20365136 -123917353 - AluSx SINE Alu -12 300 182 717 148 0 0 chr12 20365136 20365244 -123917245 - AluSx SINE Alu -203 109 2 2204 123 0 3 chr12 20365256 20365564 -123916925 - AluY SINE Alu -4 307 1 2216 111 0 3 chr12 20365803 20366100 -123916389 - AluSx SINE Alu -16 296 1 2168 110 3 3 chr12 20366102 20366394 -123916095 - AluSc SINE Alu -17 292 1 2564 160 10 53 chr12 20366396 20366617 -123915872 + MER4E LTR ERV1 268 497 -282 1717 186 0 19 chr12 20366617 20366924 -123915565 - AluJb SINE Alu -11 301 1 2564 160 10 53 chr12 20366924 20367207 -123915282 + MER4E LTR ERV1 497 750 -29 576 93 0 0 chr12 20367216 20367291 -123915198 + AluJb SINE Alu 192 266 -46 2304 75 7 13 chr12 20367701 20368006 -123914483 + AluSc SINE Alu 1 303 -6 2115 111 0 0 chr12 20368041 20368321 -123914168 + AluSx SINE Alu 1 280 -32 2322 90 0 17 chr12 20368415 20368716 -123913773 - AluSq SINE Alu -11 302 7 2083 122 24 0 chr12 20368722 20369018 -123913471 - AluSg SINE Alu -7 303 1 189 346 110 8 chr12 20369074 20369201 -123913288 + L2 LINE L2 994 1133 -2181 2092 145 3 3 chr12 20369456 20369767 -123912722 + AluSx SINE Alu 1 311 -1 1081 224 127 0 chr12 20369792 20370037 -123912452 + AluSx SINE Alu 30 305 -7 1897 128 23 0 chr12 20370265 20370530 -123911959 + AluSg SINE Alu 6 276 -34 1317 112 0 0 chr12 20370893 20371063 -123911426 - AluSq SINE Alu -18 295 126 2461 89 0 3 chr12 20371173 20371486 -123911003 + AluSx SINE Alu 1 312 0 2111 139 0 3 chr12 20371625 20371928 -123910561 + AluSx SINE Alu 1 302 -10 494 182 88 54 chr12 20371931 20372079 -123910410 - MLT1J LTR MaLR -41 470 318 473 81 0 0 chr12 20372309 20372371 -123910118 + Alu SINE Alu 2 63 -255 1984 123 10 32 chr12 20372384 20372694 -123909795 + AluSx SINE Alu 1 303 -9 2110 128 7 0 chr12 20372837 20373134 -123909355 - AluJb SINE Alu -13 299 1 1799 178 111 111 chr12 20373447 20373521 -123908968 + MLT2B2 LTR ERVL 1 74 -441 2191 97 30 0 chr12 20373521 20373819 -123908670 + AluSx SINE Alu 1 307 -5 1799 178 111 111 chr12 20373819 20373996 -123908493 + MLT2B2 LTR ERVL 74 250 -265 1981 120 27 20 chr12 20373996 20374297 -123908192 + AluSx SINE Alu 1 303 -9 1799 178 111 111 chr12 20374297 20374551 -123907938 + MLT2B2 LTR ERVL 249 507 -8 494 86 0 0 chr12 20374803 20374873 -123907616 - AluSp/q SINE Alu -11 302 233 1741 146 11 7 chr12 20374873 20375153 -123907336 + AluJb SINE Alu 22 302 -10 321 231 103 79 chr12 20375156 20375359 -123907130 - MLT1J LTR MaLR -66 445 238 1976 135 3 10 chr12 20375427 20375724 -123906765 + AluSx SINE Alu 1 295 -17 1068 128 0 0 chr12 20376315 20376497 -123905992 + AluSg/x SINE Alu 135 316 0 2404 80 0 3 chr12 20377017 20377318 -123905171 - AluSx SINE Alu -12 300 1 414 256 60 23 chr12 20377329 20377462 -123905027 - HERVL LTR ERVL -2146 3508 3371 1707 194 0 10 chr12 20378098 20378397 -123904092 + AluJb SINE Alu 1 296 -16 1984 149 0 3 chr12 20378980 20379275 -123903214 + AluSx SINE Alu 2 295 -17 1304 214 31 21 chr12 20379932 20380134 -123902355 - MLT1A1 LTR MaLR -73 292 85 2567 111 37 0 chr12 20380134 20380484 -123902005 - THE1B LTR MaLR -1 363 1 1304 214 31 21 chr12 20380484 20380570 -123901919 - MLT1A1 LTR MaLR -280 85 1 256 238 32 0 chr12 20380919 20380982 -123901507 - MER91B DNA MER1_type -125 65 1 2177 96 0 0 chr12 20382201 20382482 -123900007 - AluSx SINE Alu -11 301 21 1568 164 96 11 chr12 20382491 20382771 -123899718 - AluJo SINE Alu -8 304 1 3909 173 6 7 chr12 20383156 20383855 -123898634 - L1PA16 LINE L1 -4 6162 5465 2175 88 4 0 chr12 20383855 20384128 -123898361 - AluSx SINE Alu -12 300 27 733 195 0 0 chr12 20384132 20384255 -123898234 - AluJb SINE Alu -188 124 2 2447 77 0 13 chr12 20384922 20385232 -123897257 - AluY SINE Alu -5 306 1 848 168 0 0 chr12 20385256 20385381 -123897108 - FLAM_C SINE Alu -18 125 1 2080 130 0 13 chr12 20385388 20385687 -123896802 - AluSx SINE Alu -17 295 1 1527 203 20 7 chr12 20385687 20385982 -123896507 - AluJo SINE Alu -13 299 1 1915 167 16 0 chr12 20386114 20386419 -123896070 + AluJo SINE Alu 1 310 -2 2032 128 45 0 chr12 20387197 20387485 -123895004 - AluSx SINE Alu -11 301 1 234 0 0 0 chr12 20387495 20387521 -123894968 + (T)n Simple_repeat Simple_repeat 1 26 0 374 278 136 0 chr12 20387937 20388099 -123894390 + MIR SINE MIR 79 262 0 385 328 146 23 chr12 20389115 20389457 -123893032 + L2 LINE L2 2503 2886 -428 308 281 52 21 chr12 20389575 20389671 -123892818 + L2 LINE L2 3132 3230 -42 313 281 177 44 chr12 20390055 20390258 -123892231 + L1ME LINE L1 5444 5652 -469 1574 196 24 0 chr12 20390260 20390556 -123891933 + AluJo SINE Alu 1 303 -9 470 187 98 41 chr12 20390582 20390705 -123891784 + FLAM_C SINE Alu 1 130 -3 244 282 107 0 chr12 20390857 20390960 -123891529 - L1MC/D LINE L1 -2008 5800 5687 1278 189 0 9 chr12 20391229 20391441 -123891048 - AluJo SINE Alu -100 212 3 2371 104 0 3 chr12 20391467 20391774 -123890715 - AluSx SINE Alu -6 306 1 688 156 0 0 chr12 20391852 20391961 -123890528 - AluJb SINE Alu -8 304 196 887 112 0 0 chr12 20391979 20392095 -123890394 - AluSq/x SINE Alu -197 116 1 230 215 15 31 chr12 20392800 20392865 -123889624 - MIR SINE MIR -60 148 85 1200 293 119 33 chr12 20392885 20393591 -123888898 + L2 LINE L2 577 1343 -1971 337 298 199 35 chr12 20393597 20393963 -123888526 + L2 LINE L2 2275 2700 -614 956 125 6 85 chr12 20393975 20394072 -123888417 - AluJo/FRAM SINE Alu -14 298 220 2172 123 0 7 chr12 20394072 20394373 -123888116 + AluSx SINE Alu 1 299 -13 956 125 6 85 chr12 20394373 20394451 -123888038 - AluJo/FRAM SINE Alu -92 220 137 389 254 25 8 chr12 20394453 20394571 -123887918 + L2 LINE L2 2691 2810 -504 666 241 21 7 chr12 20394578 20394723 -123887766 + MER58A DNA MER1_type 8 154 0 27 49 0 0 chr12 20394758 20394799 -123887690 + AT_rich Low_complexity Low_complexity 1 41 0 656 155 39 23 chr12 20395013 20395142 -123887347 - AluSq/x SINE Alu -181 132 2 326 238 111 35 chr12 20395143 20395315 -123887174 - Charlie7 DNA MER1_type -9 2603 2419 892 177 0 43 chr12 20396239 20396403 -123886086 + FRAM SINE Alu 7 163 -13 237 295 51 13 chr12 20396507 20396585 -123885904 - MIR SINE MIR -120 142 62 2078 126 0 10 chr12 20396699 20397001 -123885488 + AluSx SINE Alu 1 299 -13 485 178 19 19 chr12 20398058 20398165 -123884324 + L2 LINE L2 3201 3307 -6 2161 126 0 3 chr12 20398415 20398717 -123883772 + AluSq SINE Alu 1 301 -12 1761 186 0 7 chr12 20398720 20399016 -123883473 + AluJb SINE Alu 1 294 -18 183 42 0 0 chr12 20399161 20399185 -123883304 + (T)n Simple_repeat Simple_repeat 1 24 0 316 213 0 13 chr12 20399510 20399585 -123882904 - L1M4 LINE L1 -966 5180 5107 455 226 0 161 chr12 20399598 20399732 -123882757 - L1M4 LINE L1 -1095 5051 4954 1818 172 6 13 chr12 20399732 20400046 -123882443 + AluJb SINE Alu 1 312 0 455 226 0 161 chr12 20400046 20400097 -123882392 - L1M4 LINE L1 -1192 4954 4896 21 36 0 0 chr12 20400384 20400412 -123882077 + AT_rich Low_complexity Low_complexity 1 28 0 2101 106 6 42 chr12 20400453 20400765 -123881724 + AluSq SINE Alu 1 301 -12 407 250 106 0 chr12 20401285 20401389 -123881100 + L2 LINE L2 3199 3313 0 30 0 0 0 chr12 20402189 20402219 -123880270 + AT_rich Low_complexity Low_complexity 1 30 0 2004 154 0 0 chr12 20402219 20402511 -123879978 - AluJb SINE Alu -20 292 1 562 271 147 55 chr12 20402544 20402946 -123879543 + MLT1L LTR MaLR 164 602 -13 1070 98 0 0 chr12 20402950 20403093 -123879396 - AluSg/x SINE Alu 0 310 168 26 0 0 0 chr12 20403331 20403357 -123879132 + AT_rich Low_complexity Low_complexity 1 26 0 579 294 0 36 chr12 20403367 20403591 -123878898 - MIR SINE MIR -13 249 35 290 154 46 15 chr12 20403623 20403688 -123878801 - LTR67 LTR ERVL 0 557 491 1393 160 113 73 chr12 20403690 20404071 -123878418 - MSTD LTR MaLR 0 396 1 824 191 110 14 chr12 20404071 20404280 -123878209 - MSTD-int LTR MaLR 0 1735 1507 238 294 42 17 chr12 20404429 20404548 -123877941 - L1MC4 LINE L1 0 8042 7921 395 291 89 19 chr12 20404580 20404738 -123877751 + MER67C LTR ERV1 1 169 -541 251 278 8 30 chr12 20404739 20404872 -123877617 - L1MC4 LINE L1 -224 7818 7689 1663 159 52 4 chr12 20404922 20405046 -123877443 + AluJo SINE Alu 1 118 -194 279 0 0 0 chr12 20405046 20405077 -123877412 + (CA)n Simple_repeat Simple_repeat 2 32 0 1663 159 52 4 chr12 20405077 20405223 -123877266 + AluJo SINE Alu 118 284 -28 358 190 51 13 chr12 20405415 20405494 -123876995 - MLT1L LTR MaLR -8 607 526 757 189 0 7 chr12 20405497 20405640 -123876849 + FLAM_C SINE Alu 2 143 0 371 71 0 18 chr12 20405651 20405707 -123876782 + (GGAGAA)n Simple_repeat Simple_repeat 3 57 0 1847 159 0 3 chr12 20405712 20406002 -123876487 + AluJb SINE Alu 12 300 -12 373 269 0 28 chr12 20406167 20406275 -123876214 + LTR67 LTR ERVL 431 535 -22 207 0 0 0 chr12 20406744 20406767 -123875722 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 629 157 19 0 chr12 20407035 20407143 -123875346 + FLAM_A SINE Alu 24 133 -9 2078 128 0 10 chr12 20407144 20407440 -123875049 + AluSx SINE Alu 1 293 -19 306 271 42 80 chr12 20407847 20408109 -123874380 - LTR16B LTR ERVL -6 458 207 2342 75 3 3 chr12 20408150 20408442 -123874047 - AluSq SINE Alu -19 294 3 2509 69 0 7 chr12 20408455 20408759 -123873730 - AluY SINE Alu -9 302 1 27 0 0 0 chr12 20408759 20408786 -123873703 + AT_rich Low_complexity Low_complexity 1 27 0 2163 136 0 0 chr12 20408801 20409111 -123873378 - AluSx SINE Alu -2 310 1 635 180 21 113 chr12 20409212 20409406 -123873083 - L1MB4 LINE L1 -6 6174 5999 1928 112 0 22 chr12 20409514 20409783 -123872706 + AluSg SINE Alu 29 291 -19 341 265 53 29 chr12 20409933 20410103 -123872386 + L1MC4a LINE L1 5880 6053 -1755 22 0 0 0 chr12 20410520 20410542 -123871947 + AT_rich Low_complexity Low_complexity 1 22 0 2002 127 0 0 chr12 20410871 20411147 -123871342 + AluSx SINE Alu 1 276 -36 414 0 0 0 chr12 20411154 20411200 -123871289 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 1522 165 0 90 chr12 20412748 20413069 -123869420 + AluJo SINE Alu 3 294 -18 2226 109 13 0 chr12 20413162 20413466 -123869023 + AluY SINE Alu 3 310 -1 594 125 0 0 chr12 20413508 20413596 -123868893 + AluSp/q SINE Alu 217 304 -9 227 246 18 0 chr12 20413695 20413752 -123868737 + L1MC4 LINE L1 7793 7850 -192 273 89 22 0 chr12 20413972 20414017 -123868472 + Alu SINE Alu 256 301 0 2158 117 0 0 chr12 20414694 20414984 -123867505 - AluY SINE Alu -21 290 1 265 203 98 98 chr12 20415798 20415941 -123866548 - L2 LINE L2 -22 3291 3149 394 255 173 1 chr12 20415952 20416205 -123866284 - L2 LINE L2 -311 3002 2712 215 30 0 30 chr12 20416206 20416239 -123866250 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1350 190 32 53 chr12 20416242 20416526 -123865963 - AluJo SINE Alu -34 278 1 24 0 0 0 chr12 20416529 20416553 -123865936 + AT_rich Low_complexity Low_complexity 1 24 0 1826 159 0 10 chr12 20416554 20416844 -123865645 - AluSx SINE Alu -25 287 1 713 260 39 5 chr12 20416884 20417092 -123865397 - L1ME1 LINE L1 -3 6163 5949 1133 289 83 16 chr12 20417099 20417656 -123864833 - L2 LINE L2 -608 2706 2113 671 124 16 54 chr12 20418585 20418714 -123863775 + AluJ SINE Alu 7 130 -182 430 113 0 0 chr12 20418808 20418870 -123863619 + AluS SINE Alu 2 63 -255 2141 119 0 7 chr12 20418883 20419176 -123863313 + AluSx SINE Alu 1 291 -21 887 192 0 24 chr12 20419176 20419343 -123863146 + AluJ SINE Alu 134 296 -16 291 259 64 43 chr12 20419680 20419869 -123862620 + MIR SINE MIR 50 241 -21 2359 102 3 0 chr12 20420423 20420727 -123861762 + AluSp SINE Alu 1 305 -8 21 89 0 0 chr12 20420840 20420896 -123861593 + AT_rich Low_complexity Low_complexity 1 56 0 1582 102 0 0 chr12 20420897 20421135 -123861354 + AluY SINE Alu 76 313 0 2164 36 0 0 chr12 20421729 20421980 -123860509 - L1PA3 LINE L1 -1 6154 5904 5008 104 19 51 chr12 20422467 20422950 -123859539 + MER4E LTR ERV1 1 449 -330 2177 123 3 3 chr12 20422950 20423260 -123859229 - AluSg SINE Alu 0 310 1 5008 104 19 51 chr12 20423260 20423581 -123858908 + MER4E LTR ERV1 449 779 0 2126 125 0 13 chr12 20423630 20423933 -123858556 - AluSx SINE Alu -13 299 1 915 190 0 0 chr12 20423939 20424097 -123858392 - AluSq SINE Alu -25 288 131 1472 102 0 15 chr12 20424109 20424314 -123858175 - AluSg/x SINE Alu -6 304 103 2862 123 7 23 chr12 20424327 20424757 -123857732 - LTR10E LTR ERV1 -1 632 210 761 21 11 0 chr12 20424758 20424852 -123857637 - LTR10E LTR ERV1 -538 95 1 3489 283 10 22 chr12 20424916 20425910 -123856579 - HERVI LTR ERV1 -138 7647 6666 1160 59 15 109 chr12 20425915 20426117 -123856372 + AluY SINE Alu 1 183 -128 842 139 19 13 chr12 20426781 20426939 -123855550 - AluY SINE Alu 0 311 153 226 161 0 48 chr12 20426966 20427028 -123855461 + CT-rich Low_complexity Low_complexity 1 59 0 1815 170 23 10 chr12 20427028 20427334 -123855155 - AluSx SINE Alu -2 310 1 228 258 0 16 chr12 20427446 20427508 -123854981 - L1ME LINE L1 -537 5584 5524 935 198 119 34 chr12 20427548 20427841 -123854648 - L1ME1 LINE L1 -10 6156 5839 614 295 124 18 chr12 20428358 20428697 -123853792 - L2 LINE L2 -22 3291 2917 586 226 85 135 chr12 20428863 20429076 -123853413 - L2 LINE L2 -547 2767 2545 278 114 0 0 chr12 20429076 20429120 -123853369 + L1MC1 LINE L1 6285 6328 -5 586 226 85 135 chr12 20429120 20429345 -123853144 - L2 LINE L2 -769 2545 2310 1114 132 16 16 chr12 20429739 20429921 -123852568 + AluSx SINE Alu 2 183 -129 53 57 0 0 chr12 20430115 20430203 -123852286 + GC_rich Low_complexity Low_complexity 1 88 0 26 88 0 0 chr12 20430270 20430338 -123852151 + GC_rich Low_complexity Low_complexity 1 68 0 2607 210 32 19 chr12 20430487 20431102 -123851387 - L1PBa LINE L1 -6240 623 1 839 265 79 45 chr12 20431112 20431553 -123850936 - L1MC4a LINE L1 -1916 5892 5437 185 0 40 0 chr12 20431554 20431579 -123850910 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1245 139 19 100 chr12 20431581 20431840 -123850649 - AluSg SINE Alu -30 280 43 2398 68 0 17 chr12 20431861 20432156 -123850333 - AluSc SINE Alu -19 290 1 5148 230 26 24 chr12 20432160 20432189 -123850300 - L1PBa LINE L1 -5212 992 965 1137 180 62 69 chr12 20432189 20432506 -123849983 - AluJb SINE Alu 0 302 5 1444 169 0 99 chr12 20432515 20432708 -123849781 - AluJb SINE Alu 0 320 172 2305 110 10 0 chr12 20432708 20433017 -123849472 - AluSx SINE Alu 0 312 1 1444 169 0 99 chr12 20433017 20433174 -123849315 - AluJb SINE Alu -148 172 1 5148 230 26 24 chr12 20433174 20434898 -123847591 - L1PBa LINE L1 -5246 958 1 188 235 61 52 chr12 20435326 20435441 -123847048 - L2 LINE L2 -118 3195 3080 416 50 0 17 chr12 20435909 20435969 -123846520 + (TAGA)n Simple_repeat Simple_repeat 1 59 0 2316 96 3 10 chr12 20435976 20436290 -123846199 - AluSq SINE Alu -1 312 1 218 245 137 20 chr12 20436461 20436563 -123845926 - L2 LINE L2 -3 3310 3197 2384 90 0 0 chr12 20436640 20436940 -123845549 + AluSx SINE Alu 1 300 -12 245 234 16 16 chr12 20437941 20438005 -123844484 + MLT1J2 LTR MaLR 72 135 -315 1471 236 85 55 chr12 20438050 20438586 -123843903 - MER21A LTR ERV1 -86 845 179 2166 131 6 10 chr12 20438909 20439222 -123843267 + AluSx SINE Alu 1 312 0 333 277 10 0 chr12 20439498 20439599 -123842890 - MIR SINE MIR -57 205 104 1661 162 27 40 chr12 20439600 20439896 -123842593 - AluJo SINE Alu -15 297 6 2062 117 28 0 chr12 20440271 20440562 -123841927 - AluSx SINE Alu -13 299 1 1751 153 57 33 chr12 20440621 20440987 -123841502 - THE1C LTR MaLR 0 375 1 633 140 15 88 chr12 20441465 20441601 -123840888 - FLAM_C SINE Alu 0 143 18 214 148 0 56 chr12 20442496 20442550 -123839939 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2009 159 0 0 chr12 20442679 20442987 -123839502 - AluJb SINE Alu -4 308 1 1150 193 15 36 chr12 20443015 20443289 -123839200 - LTR29 LTR ERV1 -218 404 137 537 30 0 0 chr12 20443329 20443396 -123839093 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 1597 177 3 18 chr12 20443398 20443681 -123838808 - AluJb SINE Alu -31 281 3 305 23 0 23 chr12 20443682 20443725 -123838764 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2129 122 0 0 chr12 20443725 20444011 -123838478 - AluSq SINE Alu -27 286 1 557 135 87 0 chr12 20444033 20444137 -123838352 + L1MB5 LINE L1 5403 5515 -663 602 144 99 0 chr12 20444137 20444232 -123838257 + L1MB5 LINE L1 6045 6166 -8 432 189 21 0 chr12 20444239 20444334 -123838155 - Charlie5 DNA MER1_type -2502 110 14 23 0 0 0 chr12 20444449 20444472 -123838017 + AT_rich Low_complexity Low_complexity 1 23 0 2033 152 0 0 chr12 20446560 20446862 -123835627 - AluSx SINE Alu -10 302 1 2242 112 0 3 chr12 20447277 20447572 -123834917 - AluSx SINE Alu -18 294 1 274 366 139 28 chr12 20447587 20447803 -123834686 - MIR SINE MIR 0 262 23 182 224 0 13 chr12 20447901 20447932 -123834557 + (TA)n Simple_repeat Simple_repeat 2 32 -44 1592 195 8 42 chr12 20447932 20448311 -123834178 + MER47A DNA MER2_type 1 366 0 182 224 0 13 chr12 20448311 20448355 -123834134 + (TA)n Simple_repeat Simple_repeat 32 76 0 191 61 30 0 chr12 20448829 20448862 -123833627 + (TG)n Simple_repeat Simple_repeat 1 34 0 2233 96 7 3 chr12 20449034 20449335 -123833154 - AluSc SINE Alu -7 302 1 2432 94 3 0 chr12 20449529 20449838 -123832651 + AluSp SINE Alu 1 310 -3 1915 124 0 11 chr12 20449847 20450121 -123832368 + AluY SINE Alu 3 273 -38 1396 174 4 32 chr12 20450138 20450391 -123832098 + AluJo SINE Alu 46 291 -21 2381 89 3 0 chr12 20450402 20450705 -123831784 + AluSp SINE Alu 1 304 -9 1083 138 0 6 chr12 20450709 20450897 -123831592 + AluSg/x SINE Alu 123 309 0 2378 69 0 14 chr12 20451409 20451699 -123830790 + AluY SINE Alu 1 286 -25 836 115 14 65 chr12 20451848 20451987 -123830502 + FLAM_C SINE Alu 2 133 0 1027 153 0 29 chr12 20452131 20452301 -123830188 - FRAM SINE Alu -11 165 1 204 227 236 45 chr12 20452340 20452450 -123830039 - MIR SINE MIR -112 150 20 2271 105 7 3 chr12 20452491 20452785 -123829704 + AluSx SINE Alu 1 295 -17 1919 168 0 13 chr12 20452861 20453177 -123829312 + AluJb SINE Alu 1 312 0 1952 144 4 0 chr12 20453900 20454203 -123828286 - AluSx SINE Alu 0 306 3 339 287 90 36 chr12 20454273 20454440 -123828049 - MER5B DNA MER1_type -1 177 2 652 258 184 12 chr12 20454649 20454975 -123827514 + L2 LINE L2 2932 3313 0 1996 146 30 9 chr12 20455045 20455381 -123827108 + MER2 DNA MER2_type 1 343 -1 2127 65 18 11 chr12 20455414 20455693 -123826796 + AluY SINE Alu 1 340 0 459 17 17 0 chr12 20455693 20455752 -123826737 + (TAAAA)n Simple_repeat Simple_repeat 3 180 0 2277 92 7 0 chr12 20455764 20456056 -123826433 + AluSp SINE Alu 1 294 -19 375 169 0 0 chr12 20456056 20456127 -123826362 + (TA)n Simple_repeat Simple_repeat 1 71 0 800 135 0 9 chr12 20457281 20457392 -123825097 + FLAM_C SINE Alu 2 111 -32 23 0 0 0 chr12 20457743 20457766 -123824723 + AT_rich Low_complexity Low_complexity 1 23 0 1710 155 11 18 chr12 20457774 20458058 -123824431 + AluJb SINE Alu 21 302 -10 793 206 0 7 chr12 20458131 20458267 -123824222 + AluSq/x SINE Alu 2 136 -177 2139 107 7 10 chr12 20458267 20458567 -123823922 + AluSg SINE Alu 1 299 -11 1345 232 99 43 chr12 20458605 20459019 -123823470 + MLT1E LTR MaLR 2 438 -155 1017 179 0 0 chr12 20459540 20459713 -123822776 - FRAM SINE Alu -9 167 1 1844 127 56 18 chr12 20459717 20459880 -123822609 - AluSq SINE Alu -18 295 140 360 0 0 0 chr12 20459880 20459920 -123822569 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2239 82 4 0 chr12 20459920 20460200 -123822289 - AluSp SINE Alu -31 282 2 1844 127 56 18 chr12 20460200 20460319 -123822170 - AluSq SINE Alu -172 141 1 551 254 18 0 chr12 20460352 20460466 -123822023 + FLAM_C SINE Alu 3 118 -25 2383 90 3 0 chr12 20460518 20460817 -123821672 - AluSx SINE Alu -12 300 1 1939 203 46 22 chr12 20460935 20461014 -123821475 + L1M4 LINE L1 4713 4789 -1357 1366 192 29 98 chr12 20461014 20461400 -123821089 + MLT1A1 LTR MaLR 5 363 -2 1939 203 46 22 chr12 20461400 20461778 -123820711 + L1M4 LINE L1 4789 5181 -965 1168 133 106 0 chr12 20461805 20461993 -123820496 - AluSg/x SINE Alu -31 281 74 220 323 182 0 chr12 20463289 20463388 -123819101 - MIR SINE MIR -72 190 74 6422 143 93 98 chr12 20463655 20464235 -123818254 - L1MCa LINE L1 -4502 1924 1343 385 123 31 0 chr12 20464235 20464300 -123818189 + MADE1 DNA Mariner 1 67 -13 6422 143 93 98 chr12 20464300 20464696 -123817793 - L1MCa LINE L1 -5083 1343 946 2101 128 20 0 chr12 20464696 20465001 -123817488 + AluSq SINE Alu 1 311 -2 6422 143 93 98 chr12 20465001 20465628 -123816861 - L1MCa LINE L1 -5480 946 109 1766 181 0 10 chr12 20465628 20465926 -123816563 + AluJb SINE Alu 2 296 -16 6422 143 93 98 chr12 20465926 20466015 -123816474 - L1MCa LINE L1 -6317 109 21 216 152 0 43 chr12 20466368 20466414 -123816075 + T-rich Low_complexity Low_complexity 2 45 0 185 255 39 0 chr12 20466787 20466838 -123815651 + L2 LINE L2 3181 3233 -80 402 185 0 4 chr12 20467318 20467389 -123815100 + MER5A DNA MER1_type 38 96 -82 1255 190 31 19 chr12 20467394 20467652 -123814837 - AluJo SINE Alu -7 305 45 228 306 0 0 chr12 20467655 20467717 -123814772 + MER5A DNA MER1_type 128 189 0 250 319 178 6 chr12 20467887 20468044 -123814445 - MIR SINE MIR -31 231 48 1830 94 8 4 chr12 20468335 20468590 -123813899 - AluY SINE Alu -9 302 47 408 291 97 112 chr12 20468715 20469169 -123813320 - L2 LINE L2 0 3272 2826 1123 137 6 6 chr12 20469175 20469350 -123813139 - MER89 LTR ERV1 0 559 385 1668 164 3 17 chr12 20469363 20469650 -123812839 + AluJb SINE Alu 2 284 -28 1785 175 16 6 chr12 20469651 20469966 -123812523 + MER89 LTR ERV1 242 559 0 185 174 65 0 chr12 20469986 20470032 -123812457 + L2 LINE L2 2606 2654 -660 1080 193 8 42 chr12 20470240 20470499 -123811990 + LTR16C LTR ERVL 233 482 -9 2052 120 0 17 chr12 20470994 20471295 -123811194 - AluSq SINE Alu -17 296 1 1802 171 3 0 chr12 20471297 20471590 -123810899 - AluJb SINE Alu -18 294 1 22 79 0 0 chr12 20471624 20471662 -123810827 + AT_rich Low_complexity Low_complexity 1 38 0 371 110 50 0 chr12 20471782 20471855 -123810634 - L1PB4 LINE L1 -291 5865 5799 341 113 38 0 chr12 20471855 20471908 -123810581 + LTR24B LTR ERV1 517 571 -5 435 241 64 80 chr12 20471976 20472225 -123810264 - L1MC5 LINE L1 -457 7504 7260 609 250 91 27 chr12 20472329 20472549 -123809940 - L1MC5 LINE L1 -728 7233 7000 854 174 0 14 chr12 20472618 20472762 -123809727 - FRAM SINE Alu 0 40 1 479 243 33 55 chr12 20472766 20472947 -123809542 - L1MC4 LINE L1 -1000 7042 6866 800 136 21 21 chr12 20473040 20473180 -123809309 - L1ME LINE L1 -687 5475 5336 636 120 11 0 chr12 20473180 20473272 -123809217 + AluSg/x SINE Alu 204 296 -14 251 123 0 70 chr12 20473272 20473329 -123809160 - L1ME LINE L1 -998 5346 5294 207 0 0 0 chr12 20473400 20473423 -123809066 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 264 224 104 0 chr12 20473425 20473492 -123808997 - HsTC2 DNA Tc2 -1820 78 5 2468 80 0 0 chr12 20474039 20474340 -123808149 - AluY SINE Alu -10 301 1 609 130 120 0 chr12 20474643 20474751 -123807738 - MLT1B LTR MaLR -77 313 193 1910 88 0 8 chr12 20474879 20475128 -123807361 + MER1B DNA MER1_type 133 339 0 680 157 19 50 chr12 20475264 20475423 -123807066 - LTR37B LTR ERV1 0 468 315 2802 177 21 23 chr12 20475435 20475950 -123806539 + MLT2B3 LTR ERVL 1 514 -40 273 163 20 0 chr12 20475974 20476023 -123806466 + MLT2C2 LTR ERVL 407 456 -8 4441 127 55 24 chr12 20476071 20476697 -123805792 + Tigger3b DNA MER2_type 1 655 -2373 2337 100 3 0 chr12 20476697 20476996 -123805493 - AluSg SINE Alu -10 300 1 4441 127 55 24 chr12 20476996 20477110 -123805379 + Tigger3b DNA MER2_type 655 764 -467 1258 139 19 14 chr12 20477117 20477326 -123805163 + AluJo SINE Alu 85 294 -18 1424 124 5 5 chr12 20477347 20477556 -123804933 + AluJb SINE Alu 89 297 -15 940 115 47 0 chr12 20477576 20477724 -123804765 + Tigger3b DNA MER2_type 778 932 -299 701 155 148 0 chr12 20477764 20477906 -123804583 + LTR44 LTR ERV1 26 188 -331 237 140 18 35 chr12 20477936 20477993 -123804496 + LTR44 LTR ERV1 270 325 -194 936 285 121 31 chr12 20478690 20479212 -123803277 - Charlie7 DNA MER1_type -2036 576 8 256 170 0 21 chr12 20479416 20479463 -123803026 + MER92B LTR ERV1 3 48 -588 1934 123 33 0 chr12 20479471 20479591 -123802898 + AluSg SINE Alu 4 119 -191 234 0 0 0 chr12 20479591 20479617 -123802872 + (TAAAA)n Simple_repeat Simple_repeat 4 29 0 1934 123 33 0 chr12 20479617 20479772 -123802717 + AluSg SINE Alu 119 288 -22 2196 128 0 0 chr12 20479779 20480076 -123802413 + AluSx SINE Alu 1 297 -15 2146 97 23 16 chr12 20480088 20480398 -123802091 + AluSp SINE Alu 1 312 -1 2258 99 0 13 chr12 20480428 20480763 -123801726 + AluY SINE Alu 1 311 0 396 213 12 0 chr12 20480879 20480959 -123801530 + MER92B LTR ERV1 57 137 -499 447 216 18 63 chr12 20480987 20481098 -123801391 + MER92B LTR ERV1 134 239 -397 301 161 86 25 chr12 20481485 20481566 -123800923 + L1MC4 LINE L1 6855 6940 -1102 928 255 111 36 chr12 20481582 20482064 -123800425 + L1MC4 LINE L1 7120 7738 -304 1566 156 85 0 chr12 20482064 20482334 -123800155 + AluSx SINE Alu 1 293 -19 928 255 111 36 chr12 20482334 20482518 -123799971 + L1MC4 LINE L1 7738 7907 -135 6078 125 42 25 chr12 20482525 20483873 -123798616 + L1MA6 LINE L1 4937 6294 -6 23 0 0 0 chr12 20484441 20484464 -123798025 + AT_rich Low_complexity Low_complexity 1 23 0 2285 88 24 0 chr12 20484592 20484886 -123797603 + AluSx SINE Alu 1 301 -11 921 233 0 0 chr12 20484886 20485062 -123797427 + AluJb SINE Alu 134 309 -3 2299 103 0 0 chr12 20485620 20485922 -123796567 + AluSx SINE Alu 1 302 -10 1078 264 43 65 chr12 20486201 20486959 -123795530 + L1MC/D LINE L1 4698 5437 -743 21 36 0 0 chr12 20487014 20487042 -123795447 + AT_rich Low_complexity Low_complexity 1 28 0 2205 120 0 17 chr12 20487052 20487353 -123795136 - AluSx SINE Alu -16 296 1 1866 154 3 20 chr12 20487764 20488069 -123794420 - AluJb SINE Alu -12 300 1 498 193 111 22 chr12 20490782 20490883 -123791606 + MER58B DNA MER1_type 193 310 -2110 2316 140 17 6 chr12 20490883 20491240 -123791249 + MER46B DNA MER2_type 1 236 0 498 193 111 22 chr12 20491240 20491273 -123791216 + MER58B DNA MER1_type 310 339 -2 312 27 0 0 chr12 20491568 20491605 -123790884 + (CA)n Simple_repeat Simple_repeat 2 38 0 604 179 0 19 chr12 20491656 20491762 -123790727 - FRAM SINE Alu -4 172 69 1930 142 0 0 chr12 20492138 20492419 -123790070 + AluSq SINE Alu 1 281 -32 545 126 262 39 chr12 20492528 20492631 -123789858 + FLAM_C SINE Alu 3 128 -5 1005 200 39 18 chr12 20493032 20493263 -123789226 + L1MB3 LINE L1 5900 6133 -50 1436 172 61 4 chr12 20493263 20493524 -123788965 - AluJb SINE Alu -12 300 25 1971 127 3 59 chr12 20493621 20493945 -123788544 + AluSx SINE Alu 2 307 -5 1695 145 4 11 chr12 20494061 20494330 -123788159 + AluSq SINE Alu 24 290 -23 2182 112 0 0 chr12 20494487 20494783 -123787706 + AluY SINE Alu 1 296 -15 2170 94 0 42 chr12 20494789 20495096 -123787393 + AluSg1 SINE Alu 1 294 -15 1323 192 63 15 chr12 20495229 20495500 -123786989 - AluJb SINE Alu -28 284 1 2434 79 0 0 chr12 20495909 20496212 -123786277 + AluY SINE Alu 1 303 -8 237 229 71 14 chr12 20496408 20496478 -123786011 + L1MC/D LINE L1 5826 5899 -1909 425 282 92 7 chr12 20497535 20497677 -123784812 - MER5A DNA MER1_type 0 189 36 1267 188 19 0 chr12 20498803 20499016 -123783473 + AluJb SINE Alu 87 303 -9 805 164 14 36 chr12 20499027 20499167 -123783322 + FLAM_C SINE Alu 5 141 -2 2980 221 33 6 chr12 20499169 20499482 -123783007 + L1 LINE L1 4084 4387 -1759 285 29 0 0 chr12 20499482 20499516 -123782973 + (CA)n Simple_repeat Simple_repeat 2 35 0 2980 221 33 6 chr12 20499516 20499893 -123782596 + L1 LINE L1 4387 4793 -1353 2175 107 3 7 chr12 20499896 20500195 -123782294 + AluSp SINE Alu 1 298 -15 2103 107 0 4 chr12 20500226 20500533 -123781956 + AluSc SINE Alu 1 306 0 253 143 24 0 chr12 20500556 20500598 -123781891 - Alu SINE Alu -9 292 250 1668 138 24 71 chr12 20501278 20501467 -123781022 - AluJb SINE Alu 0 307 137 2480 63 0 3 chr12 20501467 20501769 -123780720 - AluY SINE Alu -10 301 1 1668 138 24 71 chr12 20501769 20501900 -123780589 - AluJb SINE Alu -170 137 1 2098 141 0 13 chr12 20502022 20502327 -123780162 - AluSx SINE Alu -11 301 1 225 203 106 114 chr12 20502536 20502633 -123779856 + MER112 DNA MER1_type 38 134 -126 2442 73 0 19 chr12 20502633 20502950 -123779539 - AluY SINE Alu 0 311 1 2331 75 34 0 chr12 20502952 20503244 -123779245 - AluSp SINE Alu -11 302 1 1649 195 10 3 chr12 20503245 20503548 -123778941 - AluJo SINE Alu -7 305 1 225 203 106 114 chr12 20503548 20503568 -123778921 + MER112 DNA MER1_type 134 159 -101 680 214 0 0 chr12 20504147 20504259 -123778230 + AluJo/FLAM SINE Alu 4 115 -187 2334 54 0 74 chr12 20504262 20504598 -123777891 + AluY SINE Alu 1 311 0 525 58 0 0 chr12 20504600 20504669 -123777820 - LTR9B LTR ERV1 -575 69 1 530 167 11 0 chr12 20504669 20504759 -123777730 + MER67C LTR ERV1 270 360 -350 1830 173 10 19 chr12 20504759 20505072 -123777417 + AluJo SINE Alu 1 310 -2 227 65 0 0 chr12 20505100 20505131 -123777358 + MER67C LTR ERV1 342 372 -338 1224 117 0 6 chr12 20505140 20505319 -123777170 + MER41A LTR ERV1 1 178 -376 571 128 0 0 chr12 20506869 20507178 -123775311 + AluSx SINE Alu 2 310 0 394 111 0 0 chr12 20507178 20507241 -123775248 + AluSp/q SINE Alu 236 298 -5 189 159 48 0 chr12 20508081 20508144 -123774345 + A-rich Low_complexity Low_complexity 1 66 0 919 278 80 22 chr12 20508370 20508819 -123773670 - L1PBa LINE L1 -6386 477 3 2758 117 22 75 chr12 20508832 20509136 -123773353 - LTR39 LTR ERV1 -304 479 160 1999 115 27 7 chr12 20509136 20509432 -123773057 - AluSx SINE Alu -8 304 3 2758 117 22 75 chr12 20509432 20509520 -123772969 - LTR39 LTR ERV1 -623 160 117 2331 91 3 3 chr12 20509520 20509829 -123772660 - AluSc SINE Alu 0 309 1 2758 117 22 75 chr12 20509829 20509941 -123772548 - LTR39 LTR ERV1 -666 117 1 352 138 17 0 chr12 20509943 20510001 -123772488 - L1MC1 LINE L1 -107 6226 6168 1069 148 25 31 chr12 20510016 20510212 -123772277 - AluSc SINE Alu -15 294 100 534 136 12 0 chr12 20510213 20510294 -123772195 - AluSc SINE Alu -52 257 176 4231 164 87 53 chr12 20510542 20511131 -123771358 + L1PB2 LINE L1 4237 4804 -1347 2148 123 0 0 chr12 20511131 20511423 -123771066 + AluSx SINE Alu 11 302 -10 4231 164 87 53 chr12 20511423 20512586 -123769903 + L1PB2 LINE L1 4804 6052 -99 517 122 11 0 chr12 20512686 20512776 -123769713 + AluSp/q SINE Alu 222 312 -1 1474 194 0 38 chr12 20513329 20513643 -123768846 - AluJo SINE Alu -10 302 1 1889 128 37 24 chr12 20513712 20514009 -123768480 - AluSx SINE Alu -11 301 1 2264 95 0 3 chr12 20514009 20514303 -123768186 - AluSc SINE Alu -16 293 1 604 98 19 2 chr12 20514332 20514428 -123768061 + LTR17 LTR ERV1 247 360 -354 54 16 0 0 chr12 20515295 20515356 -123767133 + AT_rich Low_complexity Low_complexity 1 61 0 1499 178 31 34 chr12 20515422 20515715 -123766774 + AluJb SINE Alu 4 295 -17 1891 144 11 0 chr12 20515858 20516143 -123766346 + AluSx SINE Alu 13 300 -12 531 150 20 0 chr12 20517078 20517178 -123765311 + AluJb SINE Alu 199 300 -12 1713 187 3 7 chr12 20517304 20517604 -123764885 + AluJb SINE Alu 14 312 0 2237 114 3 0 chr12 20517604 20517902 -123764587 + AluSx SINE Alu 1 300 -12 316 119 45 0 chr12 20517902 20517969 -123764520 + G-rich Low_complexity Low_complexity 3 72 0 278 303 30 20 chr12 20517973 20518072 -123764417 - Charlie8 DNA MER1_type -2197 220 121 311 294 27 59 chr12 20518363 20518550 -123763939 - L3 LINE CR1 -72 1505 1325 2411 80 0 0 chr12 20518911 20519210 -123763279 + AluY SINE Alu 1 299 -12 1697 182 7 0 chr12 20519490 20519781 -123762708 - AluSx SINE Alu -16 296 4 186 191 0 0 chr12 20520090 20520132 -123762357 + C-rich Low_complexity Low_complexity 1 42 0 180 176 0 0 chr12 20520146 20520180 -123762309 + C-rich Low_complexity Low_complexity 1 34 0 1379 141 200 108 chr12 20520426 20520716 -123761773 + MER4A LTR ERV1 261 594 -70 1854 132 4 21 chr12 20520716 20520997 -123761492 + AluSx SINE Alu 20 295 -17 1379 141 200 108 chr12 20520997 20521076 -123761413 + MER4A LTR ERV1 594 664 0 2088 101 42 0 chr12 20521208 20521494 -123760995 + AluSq SINE Alu 1 298 -15 523 249 120 17 chr12 20521585 20521826 -123760663 - MER34B LTR ERV1 -122 443 178 742 124 34 22 chr12 20521895 20522073 -123760416 + CT-rich Low_complexity Low_complexity 1 180 0 386 158 37 37 chr12 20522076 20522158 -123760331 - MER34B LTR ERV1 -483 82 1 34 42 0 0 chr12 20522729 20522777 -123759712 + AT_rich Low_complexity Low_complexity 1 48 0 21 57 0 0 chr12 20523495 20523530 -123758959 + AT_rich Low_complexity Low_complexity 1 35 0 426 288 8 16 chr12 20524032 20524157 -123758332 + FRAM SINE Alu 3 126 -40 1924 147 3 3 chr12 20524542 20524835 -123757654 + AluSx SINE Alu 18 310 -2 486 287 77 40 chr12 20525254 20525526 -123756963 - L2 LINE L2 0 3313 3032 * 658 197 87 16 chr12 20525522 20525705 -123756784 - L2 LINE L2 -410 2904 2709 2112 114 0 10 chr12 20525913 20526210 -123756279 + AluSq SINE Alu 1 294 -19 21 0 0 0 chr12 20526210 20526231 -123756258 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr12 20526921 20526961 -123755528 + GC_rich Low_complexity Low_complexity 1 40 0 25 75 0 0 chr12 20528561 20528614 -123753875 + GC_rich Low_complexity Low_complexity 1 53 0 2199 114 0 3 chr12 20528781 20529070 -123753419 - AluSx SINE Alu -24 288 1 908 232 46 8 chr12 20529353 20529590 -123752899 - AluJo SINE Alu -65 247 2 2055 141 7 3 chr12 20529998 20530302 -123752187 - AluSx SINE Alu -7 305 1 430 120 67 0 chr12 20530789 20530864 -123751625 - MADE1 DNA Mariner 0 80 1 400 196 8 42 chr12 20530960 20531078 -123751411 - AluJ/FRAM SINE Alu -8 294 217 419 231 37 9 chr12 20531262 20531370 -123751119 - AluSq/x SINE Alu -201 112 2 2031 126 13 0 chr12 20531592 20531893 -123750596 - AluSg SINE Alu -2 308 4 1870 152 14 14 chr12 20532241 20532537 -123749952 - AluJo SINE Alu -16 296 1 439 150 12 0 chr12 20533455 20533535 -123748954 + AluS SINE Alu 229 309 0 1807 153 27 17 chr12 20533745 20534039 -123748450 + AluSq SINE Alu 2 298 -15 1968 95 74 14 chr12 20534247 20534530 -123747959 + AluSx SINE Alu 1 300 -12 2198 77 23 7 chr12 20534592 20534891 -123747598 + AluSc SINE Alu 1 304 -5 743 205 29 0 chr12 20535529 20535700 -123746789 - L1M4 LINE L1 -1115 5031 4856 1222 224 29 25 chr12 20535731 20536008 -123746481 + AluJo SINE Alu 5 282 -30 2004 113 50 20 chr12 20536008 20536310 -123746179 - AluSx SINE Alu -1 311 1 1932 131 7 3 chr12 20536334 20536640 -123745849 - AluSp SINE Alu 0 307 1 23 54 0 0 chr12 20536873 20536910 -123745579 + AT_rich Low_complexity Low_complexity 1 37 0 385 282 50 33 chr12 20537301 20537438 -123745051 + MIR SINE MIR 6 148 -114 1666 170 109 52 chr12 20537438 20537843 -123744646 - MSTC LTR MaLR 0 428 1 385 282 50 33 chr12 20537843 20537886 -123744603 + MIR SINE MIR 148 189 -73 1084 128 0 0 chr12 20538008 20538156 -123744333 + AluSg/x SINE Alu 149 296 -16 1978 166 0 0 chr12 20538330 20538637 -123743852 - AluJo SINE Alu -5 307 1 366 43 21 0 chr12 20539931 20539978 -123742511 - MER4A LTR ERV1 -489 175 128 2099 123 3 0 chr12 20539978 20540263 -123742226 - AluSc SINE Alu -22 287 2 402 100 0 0 chr12 20540273 20540333 -123742156 - Alu SINE Alu -10 301 242 1720 146 7 22 chr12 20540338 20540613 -123741876 + AluJb SINE Alu 28 298 -14 2501 97 46 0 chr12 20541124 20541474 -123741015 - MER51C LTR ERV1 0 640 275 659 109 11 0 chr12 20541474 20541566 -123740923 + AluSq/x SINE Alu 28 120 -193 857 125 26 33 chr12 20541567 20541719 -123740770 + LTR10E LTR ERV1 481 631 -2 699 205 86 28 chr12 20541723 20541936 -123740553 + HERVI LTR ERV1 5 225 -6424 1077 196 15 0 chr12 20541976 20542175 -123740314 + Harlequin LTR ERV1 2740 2941 -3955 1468 145 114 8 chr12 20542465 20542727 -123739762 - AluJo SINE Alu -13 299 10 185 390 20 0 chr12 20543434 20543534 -123738955 - L2 LINE L2 -33 3280 3179 473 181 71 8 chr12 20543632 20543759 -123738730 - AluSc SINE Alu -15 294 160 44 95 0 0 chr12 20543805 20543921 -123738568 + GC_rich Low_complexity Low_complexity 1 116 0 231 330 0 10 chr12 20547130 20547230 -123735259 + MIR SINE MIR 163 261 -1 377 292 0 0 chr12 20547378 20547474 -123735015 - MIR SINE MIR -70 192 97 1666 184 10 16 chr12 20548276 20548581 -123733908 + AluJo SINE Alu 1 303 -9 24 0 0 0 chr12 20548634 20548658 -123733831 + AT_rich Low_complexity Low_complexity 1 24 0 2310 92 0 0 chr12 20548705 20548999 -123733490 - AluSg SINE Alu -16 294 1 417 266 8 48 chr12 20549343 20549467 -123733022 + MLT-int LTR MaLR 1081 1199 -536 191 264 64 64 chr12 20550025 20550056 -123732433 + L2 LINE L2 3153 3183 -89 1750 148 30 33 chr12 20550056 20550360 -123732129 - AluJo SINE Alu -9 303 1 191 264 64 64 chr12 20550360 20550438 -123732051 + L2 LINE L2 3182 3262 -10 180 152 0 0 chr12 20550942 20550975 -123731514 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 366 179 60 0 chr12 20551028 20551112 -123731377 + L1MC/D LINE L1 5352 5440 -2368 487 71 29 0 chr12 20551114 20551184 -123731305 + Alu SINE Alu 2 73 -236 1605 161 10 33 chr12 20551366 20551726 -123730763 + AluJb SINE Alu 6 358 0 2117 113 0 3 chr12 20551795 20552079 -123730410 + AluSx SINE Alu 1 283 -29 229 180 60 0 chr12 20552106 20552156 -123730333 - LTR37B LTR ERV1 -278 190 138 1152 178 107 28 chr12 20552158 20552462 -123730027 + Charlie1b DNA MER1_type 8 341 -2420 1920 136 10 17 chr12 20552462 20552763 -123729726 + AluSx SINE Alu 1 299 -13 1152 178 107 28 chr12 20552763 20552784 -123729705 + Charlie1b DNA MER1_type 341 359 -164 1089 159 6 6 chr12 20552767 20552937 -123729552 - MER2 DNA MER2_type -173 172 3 * 250 346 47 16 chr12 20552976 20553103 -123729386 - L2 LINE L2 -3 3310 3180 228 35 0 0 chr12 20553271 20553300 -123729189 + (T)n Simple_repeat Simple_repeat 1 29 0 27 0 0 0 chr12 20553386 20553413 -123729076 + GC_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr12 20553448 20553485 -123729004 + GC_rich Low_complexity Low_complexity 1 37 0 30 0 0 0 chr12 20553491 20553521 -123728968 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chr12 20554596 20554632 -123727857 + AT_rich Low_complexity Low_complexity 1 36 0 1674 173 0 42 chr12 20555633 20555939 -123726550 + AluJo SINE Alu 1 293 -19 1080 238 126 80 chr12 20556202 20556764 -123725725 - MLT1G LTR MaLR 0 590 3 663 200 7 35 chr12 20556764 20556909 -123725580 - FAM SINE Alu -4 45 1 1679 176 35 24 chr12 20557033 20557099 -123725390 - L1MB7 LINE L1 -293 5891 5827 2351 78 0 69 chr12 20557099 20557283 -123725206 - AluSp SINE Alu -3 310 115 315 0 0 0 chr12 20557283 20557318 -123725171 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2387 48 0 21 chr12 20557318 20557608 -123724881 - AluY SINE Alu -27 284 1 2351 78 0 69 chr12 20557608 20557755 -123724734 - AluSp SINE Alu -196 117 1 1679 176 35 24 chr12 20557755 20558064 -123724425 - L1MB7 LINE L1 -357 5827 5512 1702 177 35 0 chr12 20558206 20558494 -123723995 - AluJo SINE Alu -13 299 2 638 197 59 0 chr12 20558502 20558654 -123723835 - Charlie1 DNA MER1_type -420 2341 2181 1712 166 7 7 chr12 20559833 20560135 -123722354 + AluJb SINE Alu 11 312 0 773 174 0 0 chr12 20560147 20560279 -123722210 + FLAM_C SINE Alu 2 133 -10 2063 102 7 3 chr12 20560449 20560759 -123721730 - AluSx SINE Alu 0 311 1 264 207 23 23 chr12 20560759 20560846 -123721643 + MER5C DNA MER1_type 170 256 -68 2088 137 0 7 chr12 20560854 20561153 -123721336 - AluSx SINE Alu -15 297 1 877 233 29 0 chr12 20561556 20561766 -123720723 - AluJb SINE Alu -23 289 74 285 128 0 0 chr12 20561923 20561970 -123720519 + (TA)n Simple_repeat Simple_repeat 2 48 0 1805 154 58 0 chr12 20561982 20562274 -123720215 + AluSx SINE Alu 3 311 -1 226 164 36 36 chr12 20562279 20562334 -123720155 - L1MC/D LINE L1 -2048 5760 5706 243 172 17 35 chr12 20562353 20562411 -123720078 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 523 0 30 0 chr12 20562414 20562481 -123720008 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 753 257 69 27 chr12 20562766 20563027 -123719462 + MER20B DNA MER1_type 1 272 -511 2087 123 10 3 chr12 20563027 20563335 -123719154 - AluSx SINE Alu -2 310 1 27 0 0 0 chr12 20563338 20563365 -123719124 + AT_rich Low_complexity Low_complexity 1 27 0 2347 81 27 0 chr12 20566158 20566455 -123716034 + AluSx SINE Alu 8 312 0 2358 104 10 3 chr12 20566614 20566923 -123715566 + AluSq SINE Alu 1 311 -2 327 49 0 0 chr12 20566923 20566964 -123715525 + (TA)n Simple_repeat Simple_repeat 2 42 0 357 281 0 0 chr12 20566967 20567056 -123715433 + L1MC4 LINE L1 6615 6703 -1339 318 322 0 0 chr12 20566976 20567066 -123715423 - L1MC4 LINE L1 -1339 6703 6614 * 1660 158 7 61 chr12 20567308 20567480 -123715009 - AluJb SINE Alu -14 298 118 342 0 0 0 chr12 20567480 20567518 -123714971 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2202 110 0 0 chr12 20567518 20567800 -123714689 - AluSx SINE Alu -30 282 1 1660 158 7 61 chr12 20567800 20567923 -123714566 - AluJb SINE Alu -192 120 18 610 128 32 72 chr12 20568134 20568259 -123714230 + MLT1C LTR MaLR 14 133 -334 643 117 11 0 chr12 20568265 20568359 -123714130 - MSTB1 LTR MaLR -4 428 334 1796 186 48 53 chr12 20568364 20568826 -123713663 + LTR10B LTR ERV1 1 547 0 237 181 128 0 chr12 20568826 20568919 -123713570 - MSTB1 LTR MaLR -100 332 228 234 260 130 0 chr12 20568946 20569046 -123713443 - MSTB1 LTR MaLR -269 163 51 855 230 63 0 chr12 20569170 20569344 -123713145 + AluJb SINE Alu 106 290 -22 911 161 7 0 chr12 20569344 20569499 -123712990 - L1 LINE L1 -3462 2684 2529 * 4370 107 93 11 chr12 20569497 20569982 -123712507 + L1PBa LINE L1 2188 2767 -4095 2123 119 0 7 chr12 20569982 20570285 -123712204 + AluSx SINE Alu 1 301 -11 4370 107 93 11 chr12 20570285 20570612 -123711877 + L1PBa LINE L1 2767 3066 -3796 186 133 0 0 chr12 20571417 20571447 -123711042 + (T)n Simple_repeat Simple_repeat 1 30 0 1153 95 0 6 chr12 20571447 20571605 -123710884 - LTR17 LTR ERV1 -454 326 170 748 103 0 0 chr12 20571654 20571761 -123710728 - AluY SINE Alu -7 304 198 2994 92 19 7 chr12 20572465 20572878 -123709611 - MER4E LTR ERV1 -348 418 1 245 270 16 0 chr12 20572878 20572938 -123709551 + MER20B DNA MER1_type 510 570 -213 565 243 29 21 chr12 20572954 20573094 -123709395 + MER2 DNA MER2_type 1 141 -204 2274 60 40 10 chr12 20573103 20573404 -123709085 + AluY SINE Alu 1 310 -1 1315 101 106 0 chr12 20573417 20573625 -123708864 - MER30 DNA MER1_type 0 230 1 587 62 0 0 chr12 20573625 20573705 -123708784 + MER2 DNA MER2_type 132 211 -134 785 188 30 30 chr12 20573925 20574122 -123708367 + PABL_B LTR ERV1 461 657 -10 180 0 0 0 chr12 20574186 20574206 -123708283 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1773 148 11 14 chr12 20574208 20574357 -123708132 - AluSx SINE Alu -30 282 133 2076 108 7 3 chr12 20574357 20574652 -123707837 - AluSg SINE Alu -14 296 1 1773 148 11 14 chr12 20574652 20574785 -123707704 - AluSx SINE Alu -179 133 1 383 74 19 0 chr12 20574785 20574839 -123707650 + LTR44 LTR ERV1 465 519 0 1639 122 129 0 chr12 20574839 20575110 -123707379 + Tigger3(Golem) DNA MER2_type 2722 3027 -2 294 186 12 58 chr12 20575130 20575216 -123707273 - LTR37B LTR ERV1 -243 225 144 525 301 39 0 chr12 20575235 20575388 -123707101 + MER58A DNA MER1_type 14 172 -52 2972 117 15 0 chr12 20575515 20575926 -123706563 + LTR3 LTR ERVK 1 417 -15 222 255 47 9 chr12 20576047 20576153 -123706336 + G-rich Low_complexity Low_complexity 6 115 0 284 242 32 0 chr12 20576437 20576499 -123705990 - MLT1L LTR MaLR -337 278 215 261 314 14 0 chr12 20576469 20576539 -123705950 - MLT1J LTR MaLR -331 180 110 * 607 200 0 0 chr12 20576571 20576671 -123705818 + AluJ/FLAM SINE Alu 2 101 -211 2156 105 3 25 chr12 20576815 20577156 -123705333 + AluSg SINE Alu 1 310 0 335 104 15 15 chr12 20577158 20577225 -123705264 - MER69 DNA AcHobo -78 2448 2382 313 217 0 0 chr12 20577378 20577438 -123705051 - MER69 DNA AcHobo -2465 61 2 1760 166 10 10 chr12 20577709 20577999 -123704490 + AluSx SINE Alu 1 290 -22 384 247 31 12 chr12 20578204 20578366 -123704123 + (TA)n Simple_repeat Simple_repeat 1 165 0 2173 139 0 0 chr12 20578468 20578778 -123703711 - AluSq SINE Alu -3 310 1 21 0 0 0 chr12 20579061 20579082 -123703407 + AT_rich Low_complexity Low_complexity 1 21 0 2007 156 3 13 chr12 20579087 20579430 -123703059 + AluJb SINE Alu 1 312 0 2215 60 32 3 chr12 20580229 20580513 -123701976 - AluY SINE Alu -19 292 1 463 265 30 8 chr12 20580745 20580877 -123701612 - MIR SINE MIR -18 244 110 2530 76 70 20 chr12 20581346 20581703 -123700786 + THE1C LTR MaLR 1 375 0 1493 176 61 11 chr12 20581951 20582229 -123700260 - AluJb SINE Alu -20 292 1 308 211 120 38 chr12 20582310 20582443 -123700046 + L1ME4a LINE L1 5801 5944 -177 507 42 70 0 chr12 20582444 20582515 -123699974 + AluY SINE Alu 214 289 -22 228 67 0 0 chr12 20583236 20583266 -123699223 + (CA)n Simple_repeat Simple_repeat 1 30 0 379 324 56 17 chr12 20583629 20583808 -123698681 - MIR SINE MIR -40 222 37 206 136 23 0 chr12 20583959 20584003 -123698486 + T-rich Low_complexity Low_complexity 2 46 0 2370 107 0 0 chr12 20584005 20584315 -123698174 - AluSx SINE Alu -2 310 1 2431 93 6 0 chr12 20584325 20584636 -123697853 - AluSq SINE Alu 0 313 1 22 35 0 0 chr12 20584849 20584878 -123697611 + AT_rich Low_complexity Low_complexity 1 29 0 1576 174 10 27 chr12 20585463 20585756 -123696733 + AluJb SINE Alu 1 288 -24 25 19 7 0 chr12 20585879 20585951 -123696538 + AT_rich Low_complexity Low_complexity 1 32 0 1800 169 0 6 chr12 20585974 20586287 -123696202 - AluSx SINE Alu -1 311 1 428 223 134 32 chr12 20587302 20587459 -123695030 - MIR SINE MIR -7 255 83 391 162 0 99 chr12 20587806 20587948 -123694541 + FLAM_C SINE Alu 1 128 -5 1719 143 0 16 chr12 20588622 20588874 -123693615 + AluSx SINE Alu 50 297 -15 1429 210 17 7 chr12 20588952 20589242 -123693247 - AluJb SINE Alu -19 293 1 47 44 0 0 chr12 20590881 20590949 -123691540 + GC_rich Low_complexity Low_complexity 1 68 0 189 0 0 0 chr12 20591178 20591199 -123691290 + (GGA)n Simple_repeat Simple_repeat 1 21 0 291 54 0 0 chr12 20591319 20591356 -123691133 + (GGA)n Simple_repeat Simple_repeat 2 38 0 276 353 22 0 chr12 20591540 20591679 -123690810 + CT-rich Low_complexity Low_complexity 3 144 0 2117 128 3 0 chr12 20592051 20592348 -123690141 - AluSq SINE Alu -15 298 1 239 169 14 99 chr12 20592457 20592528 -123689961 + Tigger5 DNA MER2_type 1446 1510 -813 453 141 0 0 chr12 20592649 20592713 -123689776 + AluS SINE Alu 3 66 -247 1735 161 13 3 chr12 20593290 20593589 -123688900 + AluJo SINE Alu 1 302 -10 304 111 22 0 chr12 20593642 20593687 -123688802 + Alu SINE Alu 1 46 -256 286 154 0 19 chr12 20594928 20594980 -123687509 + Alu SINE Alu 2 52 -250 196 288 17 0 chr12 20595232 20595291 -123687198 - L2 LINE L2 0 3272 3213 436 275 150 14 chr12 20595384 20595591 -123686898 + MIR SINE MIR 20 254 -8 209 33 33 0 chr12 20595604 20595634 -123686855 + (TAA)n Simple_repeat Simple_repeat 2 32 0 349 222 14 0 chr12 20596206 20596278 -123686211 + FLAM SINE Alu 54 126 -7 842 269 173 6 chr12 20596486 20596810 -123685679 + ERVL LTR ERVL 4054 4431 -1333 348 181 121 0 chr12 20597195 20597278 -123685211 - AluJb SINE Alu -9 293 201 4342 60 0 5 chr12 20698865 20699436 -123583053 + L1P3 LINE L1 5254 5821 -351 1437 156 9 130 chr12 20699431 20699855 -123582634 + L1PA12 LINE L1 2699 3064 -4510 * 190 327 106 35 chr12 20701390 20701644 -123580845 - L2 LINE L2 -28 3285 3014 233 291 0 0 chr12 20702072 20702127 -123580362 + (TG)n Simple_repeat Simple_repeat 2 56 0 3243 202 13 5 chr12 20702955 20703574 -123578915 + MER82 DNA MER2_type 1 624 -29 235 234 68 41 chr12 20703620 20703748 -123578741 + MIR SINE MIR 17 152 -68 772 152 0 16 chr12 20704358 20704483 -123578006 - FLAM_A SINE Alu -10 123 1 434 324 242 16 chr12 20706293 20706657 -123575832 + L2 LINE L2 2847 3292 -21 195 42 0 0 chr12 20706665 20706689 -123575800 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 183 80 0 0 chr12 20707270 20707295 -123575194 + (TATG)n Simple_repeat Simple_repeat 4 28 0 22 0 0 0 chr12 20707825 20707847 -123574642 + AT_rich Low_complexity Low_complexity 1 22 0 1582 181 33 26 chr12 20707869 20708172 -123574317 + AluJo SINE Alu 1 305 -7 264 384 15 0 chr12 20708470 20708603 -123573886 + L2 LINE L2 2198 2332 -982 252 130 93 0 chr12 20708603 20708657 -123573832 + L1PB4 LINE L1 6098 6156 0 765 214 9 86 chr12 20708885 20709095 -123573394 + MIR SINE MIR 59 252 -10 2322 92 0 10 chr12 20709097 20709403 -123573086 - AluSg SINE Alu -7 303 1 199 420 35 18 chr12 20709431 20709600 -123572889 + L2 LINE L2 2555 2726 -588 4932 125 59 25 chr12 20710624 20711012 -123571477 - L1MA8 LINE L1 -25 6266 5893 1673 157 88 64 chr12 20711012 20711405 -123571084 + LTR54 LTR ERV1 1 410 -100 2242 87 0 7 chr12 20711405 20711694 -123570795 - AluSc SINE Alu -22 287 1 1673 157 88 64 chr12 20711694 20711798 -123570691 + LTR54 LTR ERV1 410 510 0 4932 125 59 25 chr12 20711798 20712355 -123570134 - L1MA8 LINE L1 -398 5893 5289 29 0 0 0 chr12 20712369 20712398 -123570091 + AT_rich Low_complexity Low_complexity 1 29 0 2040 207 26 42 chr12 20712536 20713038 -123569451 + MER52A LTR ERV1 1262 1755 0 1325 222 19 0 chr12 20713251 20713512 -123568977 - AluJo SINE Alu -46 266 1 602 162 84 7 chr12 20713538 20713680 -123568809 - L1MA9 LINE L1 -1 6311 6159 5592 122 40 21 chr12 20713744 20715191 -123567298 - L1PA14 LINE L1 0 6161 4704 4134 176 33 1 chr12 20715192 20716040 -123566449 + L1P LINE L1 3865 4739 -1407 258 299 124 29 chr12 20716069 20716206 -123566283 + L2 LINE L2 2685 2834 -480 3354 86 286 0 chr12 20716277 20716812 -123565677 - LTR12 LTR ERV1 0 688 1 340 252 28 36 chr12 20717065 20717209 -123565280 + L2 LINE L2 3162 3258 -14 218 316 88 9 chr12 20717481 20717595 -123564894 + L2 LINE L2 3181 3303 -10 442 324 66 23 chr12 20718243 20718502 -123563987 + L1MD2 LINE L1 4981 5250 -896 742 284 88 15 chr12 20718535 20718845 -123563644 + L1MD2 LINE L1 5350 5699 -2109 575 89 0 0 chr12 20718845 20718924 -123563565 + MADE1 DNA Mariner 2 80 0 742 284 88 15 chr12 20718924 20719021 -123563468 + L1MD2 LINE L1 5699 5787 -2021 223 255 39 69 chr12 20720230 20720332 -123562157 - MIR SINE MIR -115 147 49 614 288 132 0 chr12 20720514 20720726 -123561763 - MIR SINE MIR 0 262 23 634 312 32 28 chr12 20720752 20720970 -123561519 + MIR SINE MIR 17 235 -27 26602 44 2 0 chr12 20722270 20725678 -123556811 - L1P LINE L1 -2728 3418 4 422 264 38 44 chr12 20725689 20725848 -123556641 + MIR SINE MIR 103 260 -2 276 215 77 0 chr12 20725941 20726046 -123556443 + L1M1 LINE L1 5374 5491 -677 251 167 130 19 chr12 20726180 20726234 -123556255 + L2 LINE L2 2570 2629 -685 328 222 51 51 chr12 20726234 20726403 -123556086 - MLT1I LTR MaLR -2 565 231 1009 133 0 0 chr12 20726748 20726899 -123555590 - THE1C LTR MaLR -224 151 1 424 194 65 0 chr12 20726899 20727007 -123555482 + L1MD2 LINE L1 6223 6337 -22 537 295 0 7 chr12 20727153 20727292 -123555197 + L2 LINE L2 3176 3313 0 357 265 94 12 chr12 20727308 20727478 -123555011 + L1MC4a LINE L1 5727 5910 -1898 367 293 207 0 chr12 20727506 20727680 -123554809 + MIR SINE MIR 10 219 -43 24 0 0 0 chr12 20727871 20727895 -123554594 + AT_rich Low_complexity Low_complexity 1 24 0 253 231 0 51 chr12 20729850 20729928 -123552561 - MER93b LTR ERV1 -30 343 270 23 0 0 0 chr12 20729951 20729974 -123552515 + AT_rich Low_complexity Low_complexity 1 23 0 302 207 0 0 chr12 20730059 20730117 -123552372 - MSTA LTR MaLR -2 426 369 272 175 0 0 chr12 20730217 20730274 -123552215 - L1 LINE L1 -889 5257 5201 22 35 0 0 chr12 20731186 20731215 -123551274 + AT_rich Low_complexity Low_complexity 1 29 0 310 120 93 27 chr12 20732119 20732194 -123550295 + L1PA8 LINE L1 6093 6172 0 263 375 81 22 chr12 20733431 20733567 -123548922 + L2 LINE L2 3125 3268 -4 2516 177 18 81 chr12 20734056 20734611 -123547878 - MLT2B1 LTR ERVL 0 520 1 210 290 0 58 chr12 20734998 20735067 -123547422 + MIR SINE MIR 49 113 -149 2293 98 14 0 chr12 20735170 20735466 -123547023 - AluSp SINE Alu -13 300 1 202 283 104 38 chr12 20735507 20735613 -123546876 - MIR3 SINE MIR -54 154 42 180 336 55 82 chr12 20735664 20735774 -123546715 - L2 LINE L2 -37 3235 3129 405 315 93 6 chr12 20735907 20736069 -123546420 + MIR SINE MIR 22 197 -65 414 216 0 0 chr12 20736088 20736176 -123546313 + MER94 DNA DNA 8 95 -39 333 344 104 0 chr12 20736383 20736537 -123545952 - MIR3 SINE MIR -1 207 38 198 300 150 17 chr12 20737405 20737525 -123544964 + L2 LINE L2 3133 3268 -4 260 118 0 20 chr12 20737900 20737951 -123544538 + (GA)n Simple_repeat Simple_repeat 2 51 0 2168 107 19 23 chr12 20738712 20739022 -123543467 - AluSx SINE Alu -3 309 1 2300 108 13 0 chr12 20739587 20739894 -123542595 - AluSp SINE Alu -2 311 1 247 230 0 27 chr12 20740231 20740305 -123542184 - MLT1K LTR MaLR 0 588 517 1569 213 32 15 chr12 20740548 20740956 -123541533 + MLT1C LTR MaLR 53 467 0 1384 55 6 6 chr12 20741655 20741836 -123540653 - L1PA6 LINE L1 -11 6143 5963 2618 52 23 0 chr12 20741836 20742181 -123540308 + L1PA6 LINE L1 5601 5953 -201 2985 126 133 61 chr12 20742240 20742962 -123539527 - LTR1 LTR ERV1 0 785 12 409 318 194 5 chr12 20743575 20743786 -123538703 + MIR SINE MIR 2 252 -10 2142 186 38 2 chr12 20744910 20744944 -123537545 - MLT2D LTR ERVL 0 414 383 318 67 0 0 chr12 20744944 20744989 -123537500 + (TG)n Simple_repeat Simple_repeat 1 45 0 2142 186 38 2 chr12 20744989 20745352 -123537137 - MLT2D LTR ERVL -31 383 3 23 0 0 0 chr12 20745454 20745477 -123537012 + AT_rich Low_complexity Low_complexity 1 23 0 5331 57 0 3 chr12 20746180 20746848 -123535641 + L1PA8 LINE L1 5505 6170 -2 505 197 45 15 chr12 20749073 20749205 -123533284 + L1 LINE L1 4255 4390 -1756 817 287 38 4 chr12 20749205 20749442 -123533047 + MIR SINE MIR 8 252 -10 260 328 30 30 chr12 20749678 20749876 -123532613 + L2 LINE L2 2456 2653 -661 268 83 42 0 chr12 20750118 20750166 -123532323 + L1MB3 LINE L1 6132 6181 -2 1703 212 162 24 chr12 20750361 20750988 -123531501 + MER52A LTR ERV1 1 800 -955 1780 188 27 0 chr12 20751798 20752091 -123530398 + AluJo SINE Alu 1 301 -11 271 378 8 0 chr12 20752697 20752816 -123529673 + MIR SINE MIR 143 262 0 454 347 62 32 chr12 20753430 20753799 -123528690 + L2 LINE L2 1814 2193 -1121 685 250 27 58 chr12 20754401 20754661 -123527828 + MLT1J LTR MaLR 19 270 -241 234 91 0 0 chr12 20754685 20754718 -123527771 + (TA)n Simple_repeat Simple_repeat 1 33 0 476 288 84 77 chr12 20754862 20755147 -123527342 - L2 LINE L2 -853 2461 2175 22 0 0 0 chr12 20755569 20755591 -123526898 + AT_rich Low_complexity Low_complexity 1 22 0 304 340 59 13 chr12 20755779 20755932 -123526557 + L3b LINE CR1 1344 1503 -80 2344 59 29 10 chr12 20757140 20757446 -123525043 - AluSq SINE Alu -1 312 1 294 271 49 57 chr12 20757534 20757657 -123524832 + MIR SINE MIR 28 148 -60 2555 43 3 3 chr12 20757850 20758155 -123524334 - AluY SINE Alu -6 305 1 2382 32 4 4 chr12 20758405 20758720 -123523769 + AluY SINE Alu 1 315 0 282 136 23 0 chr12 20758772 20758816 -123523673 + Tigger5 DNA MER2_type 2279 2323 0 2420 54 10 3 chr12 20759015 20759313 -123523176 - AluY SINE Alu -11 300 1 21 36 0 0 chr12 20759416 20759444 -123523045 + AT_rich Low_complexity Low_complexity 1 28 0 406 324 125 0 chr12 20759514 20759690 -123522799 - MIR SINE MIR -8 254 57 2154 108 3 23 chr12 20759991 20760296 -123522193 + AluSx SINE Alu 1 299 -13 279 54 0 0 chr12 20760648 20760685 -123521804 + (CA)n Simple_repeat Simple_repeat 2 38 0 2284 158 59 2 chr12 20760891 20761297 -123521192 + MSTB1 LTR MaLR 4 432 0 22 0 0 0 chr12 20761813 20761835 -123520654 + AT_rich Low_complexity Low_complexity 1 22 0 413 294 53 0 chr12 20762860 20763030 -123519459 - L1ME3A LINE L1 -221 5949 5771 262 268 26 8 chr12 20763066 20763194 -123519295 - L1ME3A LINE L1 -740 5422 5293 666 268 86 71 chr12 20763316 20764048 -123518441 - L1ME3A LINE L1 -1023 5123 4381 1478 238 38 38 chr12 20764099 20764574 -123517915 - L1ME3A LINE L1 -5 6165 5691 222 37 0 0 chr12 20764575 20764602 -123517887 + (TG)n Simple_repeat Simple_repeat 2 28 0 359 162 27 0 chr12 20764602 20764676 -123517813 + (CATA)n Simple_repeat Simple_repeat 2 77 0 238 286 0 0 chr12 20764676 20764767 -123517722 - L1MC4 LINE L1 -1339 6703 6613 1247 296 104 7 chr12 20764773 20765774 -123516715 - L1ME3A LINE L1 -446 5724 4620 302 281 89 0 chr12 20765794 20765929 -123516560 - L1ME3A LINE L1 -1857 4289 4143 238 310 120 0 chr12 20766236 20766336 -123516153 - MIR SINE MIR -3 259 148 1723 175 7 26 chr12 20766405 20766713 -123515776 + AluJo SINE Alu 3 304 -8 29 0 0 0 chr12 20767362 20767391 -123515098 + AT_rich Low_complexity Low_complexity 1 29 0 301 266 149 27 chr12 20767491 20767679 -123514810 + L1ME LINE L1 5591 5801 -363 84 92 0 6 chr12 20767681 20767992 -123514497 + AT_rich Low_complexity Low_complexity 1 300 0 288 239 45 0 chr12 20768021 20768176 -123514313 + (TATAA)n Simple_repeat Simple_repeat 2 163 0 3711 118 0 27 chr12 20768199 20768799 -123513690 + L1PA16 LINE L1 2282 2865 -3984 2558 50 0 0 chr12 20768799 20769098 -123513391 + AluY SINE Alu 1 299 -12 7492 195 33 21 chr12 20769104 20771896 -123510593 + L1PA16 LINE L1 4044 6858 -11 * 8492 250 37 53 chr12 20771891 20772964 -123509525 + L1PA12 LINE L1 17 1105 -6479 7332 199 18 22 chr12 20772964 20773603 -123508886 - L1PA14 LINE L1 -8 6153 5513 1963 155 3 0 chr12 20773603 20773900 -123508589 - AluSx SINE Alu -14 298 1 7332 199 18 22 chr12 20773900 20775730 -123506759 - L1PA14 LINE L1 -648 5513 3671 8492 250 37 53 chr12 20775730 20780244 -123502245 + L1PA12 LINE L1 1105 5009 -2575 2134 75 14 0 chr12 20780246 20780538 -123501951 + AluY SINE Alu 1 296 -15 1225 271 57 17 chr12 20780555 20781078 -123501411 + L1PB1 LINE L1 6 549 -6314 429 222 8 8 chr12 20781103 20781220 -123501269 + L1PB1 LINE L1 5717 5833 -1029 * 5586 106 10 0 chr12 20781216 20782028 -123500461 + L1PB1 LINE L1 6040 6859 -8 2524 126 10 3 chr12 20782043 20782432 -123500057 + L1PA15 LINE L1 5771 6162 -3 301 208 13 26 chr12 20782434 20782511 -123499978 + L1MC5 LINE L1 7580 7655 -306 498 342 39 9 chr12 20783571 20783802 -123498687 + MIR SINE MIR 20 257 -5 390 269 62 8 chr12 20784030 20784160 -123498329 - L1ME3A LINE L1 -11 6159 6023 2064 114 37 0 chr12 20786115 20786414 -123496075 - AluSg SINE Alu 0 310 1 6208 82 1 2 chr12 20787229 20788063 -123494426 - L1PA8A LINE L1 -27 6104 5272 1287 33 0 0 chr12 20789706 20789901 -123492588 + L1PA3 LINE L1 5998 6192 0 223 329 20 9 chr12 20790052 20790167 -123492322 - MER5A DNA MER1_type -59 119 14 1497 254 83 23 chr12 20791351 20791823 -123490666 + MLT1D LTR MaLR 6 505 0 454 279 16 66 chr12 20791854 20792037 -123490452 + MER5B DNA MER1_type 4 177 -1 2229 199 39 18 chr12 20792051 20792544 -123489945 - MLT1D LTR MaLR -2 503 1 415 184 97 0 chr12 20793280 20793394 -123489095 - L1MEc LINE L1 -3163 3052 2928 292 353 77 21 chr12 20793553 20794071 -123488418 - L1MEc LINE L1 -4778 1618 1072 21 36 0 0 chr12 20794100 20794128 -123488361 + AT_rich Low_complexity Low_complexity 1 28 0 721 172 8 0 chr12 20794651 20794773 -123487716 + FLAM_A SINE Alu 1 123 -10 251 293 29 64 chr12 20794786 20794926 -123487563 - L1MEc LINE L1 -5655 550 416 2526 53 0 3 chr12 20795078 20795382 -123487107 + AluY SINE Alu 1 303 -8 303 93 0 0 chr12 20795517 20795560 -123486929 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 615 238 130 27 chr12 20796378 20796601 -123485888 + MIR SINE MIR 7 252 -10 2305 93 13 0 chr12 20797095 20797395 -123485094 - AluSp SINE Alu -9 304 1 2090 137 0 0 chr12 20797633 20797926 -123484563 + AluSx SINE Alu 1 293 -19 210 333 0 0 chr12 20802747 20802816 -123479673 - MIR SINE MIR -48 214 146 760 289 108 44 chr12 20803027 20803481 -123479008 - LTR33 LTR ERVL -4 517 35 317 296 63 13 chr12 20803591 20803750 -123478739 - L1ME LINE L1 -357 5764 5598 703 289 76 24 chr12 20803757 20804006 -123478483 + MIR SINE MIR 1 262 0 2252 91 7 3 chr12 20804021 20804318 -123478171 - AluSx SINE Alu -14 298 1 4429 82 21 6 chr12 20804334 20804957 -123477532 + L1PB1 LINE L1 5520 6151 0 285 331 120 0 chr12 20804986 20805128 -123477361 - L1ME LINE L1 -2230 5578 5420 4484 185 84 27 chr12 20806069 20806254 -123476235 - L1MA8 LINE L1 -1 6290 6117 2220 105 6 25 chr12 20806254 20806569 -123475920 + AluSx SINE Alu 2 310 -2 4484 185 84 27 chr12 20806569 20807560 -123474929 - L1MA8 LINE L1 -174 6117 5024 1693 141 36 7 chr12 20807560 20807836 -123474653 - AluSq SINE Alu -9 304 21 4484 185 84 27 chr12 20807836 20808086 -123474403 - L1MA8 LINE L1 -1267 5024 4790 1134 242 9 0 chr12 20808093 20808320 -123474169 + Charlie1a DNA MER1_type 3 231 -1224 4416 225 12 28 chr12 20808320 20809559 -123472930 - L1M4 LINE L1 -2012 4134 2916 494 265 26 8 chr12 20809541 20809775 -123472714 - L1ME LINE L1 -1763 4383 4146 * 379 352 80 56 chr12 20811297 20811584 -123470905 - L2 LINE L2 0 3272 2979 32 81 0 0 chr12 20811932 20812006 -123470483 + AT_rich Low_complexity Low_complexity 1 74 0 1559 175 0 15 chr12 20812013 20812281 -123470208 + AluJo SINE Alu 38 301 -11 2062 106 26 7 chr12 20813954 20814256 -123468233 + AluY SINE Alu 1 308 -3 190 322 52 61 chr12 20814558 20814673 -123467816 + MER5A DNA MER1_type 47 160 -29 432 257 79 40 chr12 20818321 20818473 -123464016 - MIR3 SINE MIR -38 170 13 528 233 68 0 chr12 20819222 20819355 -123463134 - L1ME3 LINE L1 -7 6155 6014 2546 40 30 0 chr12 20820533 20820833 -123461656 + AluY SINE Alu 1 309 -2 660 295 106 34 chr12 20821060 20821382 -123461107 + L3 LINE CR1 989 1333 -244 301 353 20 20 chr12 20821479 20821632 -123460857 + L2 LINE L2 2606 2758 -556 563 286 103 42 chr12 20821634 20821896 -123460593 + Charlie2 DNA MER1_type 1 278 -2504 1695 170 123 157 chr12 20821924 20822948 -123459541 + Charlie2 DNA MER1_type 1870 2858 -4 21 0 0 0 chr12 20823006 20823027 -123459462 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr12 20823692 20823731 -123458758 + AT_rich Low_complexity Low_complexity 1 39 0 211 214 107 0 chr12 20824004 20824060 -123458429 + L2 LINE L2 3149 3210 -62 25 51 0 0 chr12 20824144 20824183 -123458306 + AT_rich Low_complexity Low_complexity 1 39 0 376 258 21 0 chr12 20824186 20824283 -123458206 - MIR SINE MIR -112 150 52 734 63 0 0 chr12 20824392 20824487 -123458002 + AluS SINE Alu 1 95 -217 804 270 189 27 chr12 20825124 20825642 -123456847 - L1MC4 LINE L1 0 8042 7441 228 353 24 0 chr12 20825721 20825806 -123456683 + MLT1K LTR MaLR 162 248 -340 24 0 0 0 chr12 20825808 20825832 -123456657 + AT_rich Low_complexity Low_complexity 1 24 0 632 290 94 9 chr12 20825997 20826221 -123456268 - MIR SINE MIR -13 249 7 306 0 0 0 chr12 20826992 20827026 -123455463 + (TG)n Simple_repeat Simple_repeat 1 34 0 294 171 0 0 chr12 20827044 20827085 -123455404 - AluJo SINE Alu -45 257 217 825 199 26 0 chr12 20827085 20827241 -123455248 - AluJo SINE Alu -152 160 1 216 320 144 21 chr12 20827450 20827547 -123454942 - MIR SINE MIR -107 155 47 240 143 16 32 chr12 20829142 20829205 -123453284 + CT-rich Low_complexity Low_complexity 2 63 0 567 162 11 39 chr12 20829222 20829401 -123453088 + CT-rich Low_complexity Low_complexity 1 174 0 1268 188 106 0 chr12 20829404 20829659 -123452830 - AluJo SINE Alu -30 282 1 293 322 28 51 chr12 20831538 20831715 -123450774 - L1ME3A LINE L1 -10 6160 5988 2297 282 125 22 chr12 20831860 20832575 -123449914 - L1ME3A LINE L1 -265 5905 5265 2192 109 0 3 chr12 20832575 20832907 -123449582 + AluSq SINE Alu 1 331 0 2297 282 125 22 chr12 20832907 20833917 -123448572 - L1ME3A LINE L1 -905 5265 3933 1028 224 9 26 chr12 20833917 20834145 -123448344 + MER58A DNA MER1_type 1 224 0 2297 282 125 22 chr12 20834145 20834484 -123448005 - L1ME3A LINE L1 -2237 3933 3630 622 268 175 25 chr12 20834492 20834882 -123447607 - L1ME3A LINE L1 -2587 3559 3229 2162 112 0 7 chr12 20834882 20835178 -123447311 - AluSg SINE Alu -16 294 1 622 268 175 25 chr12 20835178 20835242 -123447247 - L1ME3A LINE L1 -2917 3229 3176 2361 78 3 0 chr12 20835242 20835537 -123446952 - AluY SINE Alu -15 296 1 622 268 175 25 chr12 20835537 20835922 -123446567 - L1ME3A LINE L1 -2970 3176 2593 2142 99 3 3 chr12 20835926 20836220 -123446269 - AluY SINE Alu -17 294 1 3479 125 45 96 chr12 20836310 20837062 -123445427 + LTR1 LTR ERV1 16 729 -56 1611 142 8 0 chr12 20837162 20837430 -123445059 - L1 LINE L1 -907 5239 4970 780 106 28 14 chr12 20837445 20837587 -123444902 + CT-rich Low_complexity Low_complexity 2 145 0 969 165 11 27 chr12 20837594 20837782 -123444707 - L1 LINE L1 -1193 4953 4769 540 349 66 37 chr12 20837908 20837941 -123444548 + L2 LINE L2 2437 2468 -846 3457 137 27 0 chr12 20837941 20838454 -123444035 + MER1A DNA MER1_type 1 527 0 540 349 66 37 chr12 20838454 20838827 -123443662 + L2 LINE L2 2468 2855 -459 1422 165 32 19 chr12 20838844 20839159 -123443330 - L1MA9 LINE L1 -10 6302 5984 387 291 137 38 chr12 20839193 20839536 -123442953 + L2 LINE L2 2830 3206 -107 312 208 150 17 chr12 20839629 20839749 -123442740 + L2 LINE L2 3159 3294 -19 642 231 173 91 chr12 20839912 20840450 -123442039 + MER34C LTR ERV1 4 585 0 243 367 47 16 chr12 20840869 20840997 -123441492 + MIR3 SINE MIR 70 201 -7 971 209 107 0 chr12 20841199 20841414 -123441075 - MIR SINE MIR -5 257 20 443 231 154 13 chr12 20842224 20842387 -123440102 - MIR3 SINE MIR -14 194 15 22 0 0 0 chr12 20842775 20842797 -123439692 + AT_rich Low_complexity Low_complexity 1 22 0 1006 238 105 13 chr12 20843044 20843402 -123439087 - MER57A LTR ERV1 0 403 48 371 172 83 41 chr12 20844053 20844198 -123438291 - LTR37B LTR ERV1 -107 361 211 716 129 0 0 chr12 20844327 20844428 -123438061 - L1PA10 LINE L1 -13 6155 6055 5008 103 8 1 chr12 20844428 20845146 -123437343 + L1P LINE L1 3614 4339 -1807 563 222 45 45 chr12 20845163 20845361 -123437128 - LTR37B LTR ERV1 -270 198 1 339 297 0 17 chr12 20845631 20845749 -123436740 - L1MC5 LINE L1 -44 7917 7802 2775 221 67 41 chr12 20845779 20845817 -123436672 - L1ME1 LINE L1 0 6239 6203 856 124 0 0 chr12 20845817 20845938 -123436551 - L1PA10 LINE L1 -12 6156 6036 2775 221 67 41 chr12 20845938 20846513 -123435976 - L1ME1 LINE L1 -36 6203 5644 1974 136 144 24 chr12 20846513 20846895 -123435594 + MSTA LTR MaLR 1 428 0 2775 221 67 41 chr12 20846895 20846988 -123435501 - L1ME1 LINE L1 -595 5644 5555 2195 110 3 0 chr12 20846988 20847287 -123435202 + AluSg SINE Alu 4 303 -7 2775 221 67 41 chr12 20847287 20847681 -123434808 - L1ME1 LINE L1 -684 5555 5129 1674 252 73 42 chr12 20847705 20847817 -123434672 - L1ME1 LINE L1 -3321 2894 2787 2184 113 139 16 chr12 20847817 20848198 -123434291 + MSTA LTR MaLR 1 428 0 1674 252 73 42 chr12 20848198 20848863 -123433626 - L1ME1 LINE L1 -3428 2787 2116 2028 151 26 83 chr12 20848863 20849321 -123433168 + MSTB1 LTR MaLR 1 432 0 1674 252 73 42 chr12 20849321 20849689 -123432800 - L1ME1 LINE L1 -4099 2116 1761 272 184 0 0 chr12 20849748 20849797 -123432692 - U7 snRNA snRNA -14 49 1 376 162 108 18 chr12 20850965 20851076 -123431413 - LTR37B LTR ERV1 0 468 348 28 0 0 0 chr12 20853045 20853073 -123429416 + AT_rich Low_complexity Low_complexity 1 28 0 3597 139 18 21 chr12 20853084 20853701 -123428788 - L1MB1 LINE L1 -1 6167 5553 366 279 106 0 chr12 20854131 20854235 -123428254 + MIR3 SINE MIR 45 159 -49 189 0 0 0 chr12 20854359 20854380 -123428109 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 2091 101 7 0 chr12 20854380 20854657 -123427832 - AluY SINE Alu -29 282 4 867 219 6 6 chr12 20855611 20855794 -123426695 + LTR41 LTR ERVL 1 183 -590 674 248 26 88 chr12 20855966 20856272 -123426217 + LTR41 LTR ERVL 486 772 -1 781 254 147 0 chr12 20856744 20856968 -123425521 + MIR SINE MIR 6 262 0 345 125 0 0 chr12 20857051 20857107 -123425382 + (ATG)n Simple_repeat Simple_repeat 2 57 0 193 309 275 20 chr12 20858341 20858490 -123423999 - MER5A DNA MER1_type -1 188 2 746 310 48 37 chr12 20860293 20860645 -123421844 - L2 LINE L2 -1 3312 2957 203 61 30 0 chr12 20860827 20860860 -123421629 + (GA)n Simple_repeat Simple_repeat 1 34 0 521 210 12 80 chr12 20860904 20860991 -123421498 - MLT1A2 LTR MaLR -223 151 78 2696 94 6 3 chr12 20860991 20861354 -123421135 + THE1B LTR MaLR 1 364 0 521 210 12 80 chr12 20861354 20861428 -123421061 - MLT1A2 LTR MaLR -296 78 1 767 258 0 6 chr12 20862328 20862491 -123419998 + MLT1F1 LTR MaLR 1 162 -431 21 57 0 0 chr12 20862606 20862641 -123419848 + AT_rich Low_complexity Low_complexity 1 35 0 3200 49 5 2 chr12 20862679 20863086 -123419403 - L1PA6 LINE L1 -3 6151 5744 205 330 35 43 chr12 20863306 20863421 -123419068 - MIR3 SINE MIR -23 185 72 271 202 10 96 chr12 20863706 20863810 -123418679 - MIR SINE MIR -57 205 111 26 0 0 0 chr12 20864082 20864108 -123418381 + AT_rich Low_complexity Low_complexity 1 26 0 206 304 0 18 chr12 20864875 20864931 -123417558 - L2 LINE L2 -2 3311 3257 208 330 60 10 chr12 20865466 20865566 -123416923 - L2 LINE L2 0 3272 3168 366 268 116 7 chr12 20866136 20866274 -123416215 - MIR SINE MIR 0 262 110 207 69 0 0 chr12 20866458 20866487 -123416002 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4155 72 24 35 chr12 20866487 20867080 -123415409 - L1PA8 LINE L1 -22 6150 5565 3219 235 51 10 chr12 20868219 20869044 -123413445 + Charlie1a DNA MER1_type 1 859 -596 900 218 279 4 chr12 20869163 20869443 -123413046 + MLT1F1 LTR MaLR 211 567 0 1777 321 88 86 chr12 20869457 20870423 -123412066 - L2 LINE L2 -1087 2227 1264 1956 107 36 7 chr12 20870423 20870704 -123411785 + AluSc SINE Alu 1 289 -20 1777 321 88 86 chr12 20870704 20870806 -123411683 - L2 LINE L2 -2050 1264 1164 475 219 0 9 chr12 20870806 20870920 -123411569 + L1PB4 LINE L1 6043 6155 -1 1777 321 88 86 chr12 20870920 20871718 -123410771 - L2 LINE L2 -2150 1164 357 360 319 13 25 chr12 20871827 20871984 -123410505 - L2 LINE L2 -2228 1086 932 209 336 148 16 chr12 20872224 20872352 -123410137 + L2 LINE L2 3127 3271 -42 2149 68 6 95 chr12 20874377 20874715 -123407774 + AluSg SINE Alu 1 308 -2 670 192 105 83 chr12 20874719 20875032 -123407457 - LTR56 LTR ERV1 -125 320 1 396 240 70 105 chr12 20875136 20875336 -123407153 + MIR SINE MIR 6 198 -64 297 119 0 174 chr12 20875987 20876096 -123406393 - L1MB3 LINE L1 0 6183 6094 188 260 207 33 chr12 20876390 20876540 -123405949 - MIR SINE MIR -10 252 77 22 0 0 0 chr12 20877898 20877920 -123404569 + AT_rich Low_complexity Low_complexity 1 22 0 421 306 155 10 chr12 20880992 20881185 -123401304 - MIR SINE MIR -7 255 35 643 282 98 31 chr12 20883479 20883866 -123398623 - L1MC5 LINE L1 -48 7913 7501 1023 224 30 25 chr12 20885135 20885372 -123397117 - MIR SINE MIR -23 239 2 651 198 0 3 chr12 20885428 20885570 -123396919 + L1ME1 LINE L1 6037 6334 0 316 222 50 86 chr12 20885960 20886181 -123396308 - L1MEc LINE L1 -3682 2533 2321 576 246 91 64 chr12 20886370 20886699 -123395790 - L1MEc LINE L1 -4822 1574 1237 2116 115 7 3 chr12 20887475 20887771 -123394718 - AluSq SINE Alu -16 297 1 272 87 58 101 chr12 20889231 20889300 -123393189 + FLAM SINE Alu 69 133 0 247 303 67 73 chr12 20889434 20889599 -123392890 - L2 LINE L2 0 3313 3150 1030 284 134 30 chr12 20889857 20890319 -123392170 + LTR33 LTR ERVL 2 511 -10 23 33 0 0 chr12 20890417 20890447 -123392042 + AT_rich Low_complexity Low_complexity 1 30 0 643 77 0 0 chr12 20890448 20890539 -123391950 + L1PA3 LINE L1 6065 6155 0 469 0 16 16 chr12 20890586 20890648 -123391841 + (CA)n Simple_repeat Simple_repeat 1 62 0 967 119 16 52 chr12 20890648 20890842 -123391647 - L1MA8 LINE L1 -22 6269 6083 219 363 78 0 chr12 20891324 20891426 -123391063 - L2 LINE L2 -610 2704 2595 276 228 13 63 chr12 20891620 20891699 -123390790 - LTR19C LTR ERV1 -89 690 616 807 233 38 0 chr12 20891700 20891910 -123390579 + AluSx SINE Alu 1 218 -94 29 28 0 0 chr12 20892254 20892290 -123390199 + AT_rich Low_complexity Low_complexity 1 36 0 195 291 36 0 chr12 20892360 20892415 -123390074 + L3 LINE CR1 707 763 -814 300 115 0 0 chr12 20894350 20894402 -123388087 + L1PA15 LINE L1 6111 6162 -3 530 319 94 60 chr12 20894416 20895161 -123387328 + L3 LINE CR1 780 1549 -28 213 39 0 0 chr12 20896183 20896209 -123386280 + (TG)n Simple_repeat Simple_repeat 2 27 0 775 235 0 0 chr12 20896584 20896737 -123385752 + AluJb SINE Alu 144 296 -16 626 296 129 18 chr12 20896902 20897182 -123385307 + L2 LINE L2 2560 2870 -444 29 0 0 0 chr12 20897741 20897770 -123384719 + AT_rich Low_complexity Low_complexity 1 29 0 266 263 88 36 chr12 20897960 20898097 -123384392 - MLT1J2 LTR MaLR -230 220 77 213 39 0 0 chr12 20898204 20898230 -123384259 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2252 89 31 6 chr12 20898233 20898557 -123383932 - L1PA13 LINE L1 -18 6145 5814 2094 111 3 38 chr12 20899429 20899745 -123382744 + AluSx SINE Alu 3 307 -5 244 349 7 34 chr12 20900199 20900345 -123382144 + L3 LINE CR1 1309 1450 -127 2880 174 20 14 chr12 20900394 20900950 -123381539 + MER89 LTR ERV1 1 559 0 2492 78 0 0 chr12 20901236 20901543 -123380946 - AluSq SINE Alu -4 309 3 1890 110 31 41 chr12 20901556 20901847 -123380642 - AluSx SINE Alu -24 288 1 572 270 28 39 chr12 20901954 20902159 -123380330 - MIR SINE MIR -21 241 37 25 75 0 0 chr12 20902511 20902564 -123379925 + AT_rich Low_complexity Low_complexity 1 53 0 205 175 48 32 chr12 20902566 20902629 -123379860 + (TTATA)n Simple_repeat Simple_repeat 5 68 0 21 0 0 0 chr12 20902693 20902714 -123379775 + AT_rich Low_complexity Low_complexity 1 21 0 229 240 177 31 chr12 20902714 20902810 -123379679 - MIR SINE MIR -58 204 95 285 313 76 21 chr12 20904187 20904331 -123378158 - MIR SINE MIR -64 198 47 428 302 75 6 chr12 20905536 20905695 -123376794 + MIR SINE MIR 63 232 -30 620 209 150 7 chr12 20906128 20906281 -123376208 + MER8 DNA MER2_type 65 239 0 872 178 89 0 chr12 20906329 20906498 -123375991 - MER5A DNA MER1_type 0 189 6 286 228 196 43 chr12 20906512 20906604 -123375885 + MER5B DNA MER1_type 21 126 -52 207 0 0 0 chr12 20907700 20907723 -123374766 + (T)n Simple_repeat Simple_repeat 1 23 0 643 199 37 12 chr12 20908330 20908491 -123373998 + Charlie1a DNA MER1_type 1291 1455 0 883 259 64 12 chr12 20909232 20909483 -123373006 - LTR50 LTR ERVL -144 651 388 1789 146 0 52 chr12 20910075 20910383 -123372106 + AluJo SINE Alu 4 295 -17 646 344 208 25 chr12 20910523 20911805 -123370684 + L3 LINE CR1 60 1576 -1 2434 68 3 10 chr12 20912704 20913012 -123369477 - AluY SINE Alu -5 306 1 1441 207 66 9 chr12 20915232 20915427 -123367062 + MLT1A1 LTR MaLR 14 237 -128 501 125 0 0 chr12 20915427 20915507 -123366982 + MADE1 DNA Mariner 1 80 0 1441 207 66 9 chr12 20915507 20915644 -123366845 + MLT1A1 LTR MaLR 237 365 0 307 314 29 20 chr12 20916090 20916192 -123366297 + MIR SINE MIR 109 211 -51 744 197 66 33 chr12 20916379 20916623 -123365866 - Charlie1 DNA MER1_type 0 2761 2510 2301 82 0 22 chr12 20916913 20917229 -123365260 + AluY SINE Alu 1 309 -2 1965 143 0 22 chr12 20917233 20917548 -123364941 + AluJb SINE Alu 3 310 -2 449 211 73 9 chr12 20917671 20917780 -123364709 - MIR SINE MIR 0 262 147 2418 97 0 0 chr12 20918086 20918386 -123364103 - AluSg SINE Alu -7 303 4 252 178 0 0 chr12 20919168 20919213 -123363276 - MER96B DNA MER1_type? -181 236 192 1727 131 12 0 chr12 20919366 20919618 -123362871 - AluJb SINE Alu -12 300 46 1906 132 4 4 chr12 20920283 20920564 -123361925 - AluSx SINE Alu -12 300 20 23 0 0 0 chr12 20920590 20920613 -123361876 + AT_rich Low_complexity Low_complexity 1 23 0 232 298 99 33 chr12 20920896 20921017 -123361472 + MER5A DNA MER1_type 37 165 -24 * 236 341 9 28 chr12 20920933 20921041 -123361448 - MER5A DNA MER1_type -72 117 1 186 156 0 0 chr12 20922317 20922349 -123360140 + MIR SINE MIR 86 117 -91 1981 132 3 14 chr12 20922467 20922763 -123359726 + AluSx SINE Alu 1 293 -19 1944 223 43 10 chr12 20923395 20923884 -123358605 + MLT1D LTR MaLR 1 505 0 478 167 0 44 chr12 20923893 20924007 -123358482 + MER96B DNA MER1_type? 250 358 -59 202 209 0 0 chr12 20924608 20924651 -123357838 + (CAA)n Simple_repeat Simple_repeat 2 44 0 251 284 37 12 chr12 20924677 20924758 -123357731 - MIR SINE MIR -71 191 109 552 188 145 7 chr12 20924770 20924908 -123357581 - MIR SINE MIR 0 262 106 1236 123 23 32 chr12 20925120 20925339 -123357150 + THE1C LTR MaLR 159 375 0 1409 273 80 66 chr12 20925384 20926334 -123356155 + HAL1 LINE L1 433 1395 -1112 2500 233 111 14 chr12 20926678 20927757 -123354732 + L1ME3 LINE L1 4972 6155 -7 647 200 97 24 chr12 20928536 20928701 -123353788 + MER5B DNA MER1_type 1 177 -1 1051 148 6 6 chr12 20929133 20929315 -123353174 + L1PB1 LINE L1 5957 6138 -13 610 242 70 23 chr12 20929580 20929795 -123352694 + MER110 LTR ERV1 246 470 -21 186 43 0 0 chr12 20930809 20930832 -123351657 + (TG)n Simple_repeat Simple_repeat 1 23 0 314 280 40 0 chr12 20931194 20931294 -123351195 + MIR SINE MIR 78 181 -81 257 425 12 12 chr12 20932355 20932515 -123349974 + L2 LINE L2 3103 3262 -10 692 210 35 142 chr12 20932830 20933204 -123349285 - MER33 DNA MER1_type -1 323 1 678 222 19 12 chr12 20934118 20934280 -123348209 + MER45A DNA AcHobo 16 178 0 878 157 39 0 chr12 20934438 20934591 -123347898 - L1PB1 LINE L1 -21 6130 5972 * 1517 226 11 11 chr12 20934570 20934942 -123347547 - L1 LINE L1 -1059 5087 4716 7625 91 57 32 chr12 20934942 20936171 -123346318 + pTR5 LTR ERV1 763 2021 -417 290 248 30 20 chr12 20936172 20936273 -123346216 + LTR30 LTR ERV1 541 642 -80 885 61 35 0 chr12 20936273 20936388 -123346101 + pTR5 LTR ERV1 66 184 -2254 610 219 65 0 chr12 20936393 20936548 -123345941 - L1PBa LINE L1 -6693 170 6 343 299 90 40 chr12 20936632 20936809 -123345680 + L2 LINE L2 2841 3026 -287 762 281 98 29 chr12 20936820 20937237 -123345252 - MLT1J2 LTR MaLR -3 447 2 477 349 60 5 chr12 20938474 20938689 -123343800 + MIR SINE MIR 1 227 -35 4848 130 32 46 chr12 20938698 20939179 -123343310 - L1PA16 LINE L1 0 6166 5679 2097 108 11 0 chr12 20939179 20939456 -123343033 - AluSg SINE Alu -30 280 1 4848 130 32 46 chr12 20939456 20939987 -123342502 - L1PA16 LINE L1 -487 5679 5167 306 252 8 84 chr12 20940023 20940142 -123342347 + L1MC/D LINE L1 5286 5395 -964 326 319 35 0 chr12 20940210 20940323 -123342166 + L1MC/D LINE L1 5548 5664 -2144 1399 200 13 10 chr12 20940355 20940665 -123341824 - L1P LINE L1 -982 5164 4854 243 291 12 70 chr12 20940687 20940773 -123341716 + L2 LINE L2 3191 3271 -1 548 247 50 108 chr12 20941432 20941813 -123340676 - L1MC4a LINE L1 -1902 5906 5548 181 0 69 0 chr12 20942885 20942914 -123339575 + (TTG)n Simple_repeat Simple_repeat 2 32 0 181 71 36 0 chr12 20943233 20943261 -123339228 + L2 LINE L2 3276 3304 -9 435 327 122 19 chr12 20943698 20944074 -123338415 - L2 LINE L2 -569 2745 2331 275 181 0 12 chr12 20944203 20944286 -123338203 + (TA)n Simple_repeat Simple_repeat 2 83 0 3385 41 5 0 chr12 20944493 20944908 -123337581 - L1PA4 LINE L1 -4 6151 5735 2280 114 0 0 chr12 20946320 20946657 -123335832 - AluSc SINE Alu 0 337 1 372 303 61 23 chr12 20947620 20947752 -123334737 + L2 LINE L2 2564 2700 -614 204 276 79 64 chr12 20947832 20948035 -123334454 + L2 LINE L2 3009 3214 -99 383 121 0 0 chr12 20949165 20949223 -123333266 - LTR35 LTR ERV1 -511 107 50 3038 106 151 16 chr12 20949412 20949957 -123332532 - LTR35 LTR ERV1 0 618 1 225 334 87 65 chr12 20950179 20950502 -123331987 + L2 LINE L2 1128 1457 -1857 230 277 15 0 chr12 20950909 20950974 -123331515 - MER5B DNA MER1_type -2 176 111 821 209 16 27 chr12 20950975 20951162 -123331327 + MER5A DNA MER1_type 1 185 -4 297 281 67 56 chr12 20954582 20954840 -123327649 - MLT1L LTR MaLR -297 318 1 216 0 0 0 chr12 20955241 20955265 -123327224 + (T)n Simple_repeat Simple_repeat 1 24 0 333 308 92 39 chr12 20955386 20955516 -123326973 + L2 LINE L2 3136 3272 0 1817 104 0 4 chr12 20957683 20957932 -123324557 + AluSg SINE Alu 54 301 -9 22 35 0 0 chr12 20959544 20959573 -123322916 + AT_rich Low_complexity Low_complexity 1 29 0 1730 143 39 52 chr12 20960206 20960514 -123321975 + AluSx SINE Alu 1 304 -8 303 337 129 51 chr12 20961188 20961600 -123320889 + L2 LINE L2 2828 3271 -1 1999 116 14 0 chr12 20961661 20961946 -123320543 - AluSx SINE Alu -21 291 3 464 150 34 122 chr12 20961974 20962121 -123320368 + MLT1E2 LTR MaLR 1 134 -492 608 205 26 0 chr12 20962129 20962246 -123320243 - LTR48B LTR ERV1 -524 120 1 1965 144 3 3 chr12 20963615 20963913 -123318576 - AluJb SINE Alu -14 298 1 261 0 0 0 chr12 20963994 20964023 -123318466 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 1674 104 5 0 chr12 20964857 20965079 -123317410 + AluSq SINE Alu 78 300 -13 1564 258 60 71 chr12 20965163 20965826 -123316663 + MER21B LTR ERV1 15 670 -193 483 230 162 7 chr12 20965829 20965977 -123316512 + MLT1A1 LTR MaLR 1 171 -194 437 253 56 56 chr12 20965978 20966156 -123316333 + MLT1K LTR MaLR 405 582 -6 2230 104 3 0 chr12 20966181 20966480 -123316009 + AluSg SINE Alu 1 300 -10 15945 78 7 1 chr12 20966689 20969678 -123312811 - L1PA7 LINE L1 -1 6153 3177 209 250 96 77 chr12 20970047 20970151 -123312338 + L2 LINE L2 3208 3313 0 988 211 177 52 chr12 20970352 20970893 -123311596 + MLT1G LTR MaLR 2 573 -17 874 126 0 7 chr12 20970945 20971088 -123311401 - L1MB7 LINE L1 -16 6168 6027 304 264 0 0 chr12 20971355 20971427 -123311062 - MIR SINE MIR -21 241 170 2523 68 0 0 chr12 20971713 20972020 -123310469 + AluY SINE Alu 1 307 -4 265 235 25 0 chr12 20972168 20972249 -123310240 + (TA)n Simple_repeat Simple_repeat 1 83 0 192 152 0 0 chr12 20972337 20972370 -123310119 + A-rich Low_complexity Low_complexity 1 33 0 252 140 60 0 chr12 20972885 20972935 -123309554 - MER116 DNA Mariner -26 54 2 391 150 0 0 chr12 20973188 20973248 -123309241 - MLT1J LTR MaLR 0 511 452 1447 150 101 28 chr12 20973292 20973578 -123308911 + AluJo SINE Alu 1 307 -5 285 277 130 47 chr12 20973653 20973692 -123308797 + L1MB4 LINE L1 5543 5577 -2231 1839 191 82 3 chr12 20973692 20974084 -123308405 - MSTA LTR MaLR -3 425 3 285 277 130 47 chr12 20974084 20974297 -123308192 + L1MB4 LINE L1 5577 5816 -1992 21 82 0 0 chr12 20974309 20974358 -123308131 + AT_rich Low_complexity Low_complexity 1 49 0 21494 157 11 20 chr12 20974389 20979417 -123303072 + L1P3 LINE L1 2 5060 -1401 763 182 7 7 chr12 20979517 20979682 -123302807 + AluSg/x SINE Alu 157 312 0 575 205 41 8 chr12 20979706 20979828 -123302661 - LTR9 LTR ERV1 -188 424 299 24 0 0 0 chr12 20979833 20979857 -123302632 + AT_rich Low_complexity Low_complexity 1 24 0 946 193 190 49 chr12 20979857 20980204 -123302285 - MSTD LTR MaLR 0 396 1 325 310 30 20 chr12 20980277 20980377 -123302112 - MIR SINE MIR -150 112 12 * 352 281 54 84 chr12 20980372 20980575 -123301914 - MIR SINE MIR -64 198 2 191 356 59 17 chr12 20980735 20980853 -123301636 + MIR SINE MIR 119 241 -21 194 233 151 0 chr12 20980870 20980943 -123301546 + L2 LINE L2 3189 3272 0 967 172 4 90 chr12 20981403 20981636 -123300853 - AluJb SINE Alu -14 298 86 74 32 0 0 chr12 20981786 20981881 -123300608 + AT_rich Low_complexity Low_complexity 1 95 0 283 157 0 0 chr12 20983079 20983130 -123299359 + L1MB4 LINE L1 6130 6180 0 399 154 77 0 chr12 20983910 20984001 -123298488 + L1MA8 LINE L1 6194 6291 0 1421 195 3 30 chr12 20984043 20984341 -123298148 + AluJo SINE Alu 1 290 -12 2139 100 27 0 chr12 20984364 20984663 -123297826 + AluSq SINE Alu 1 307 -6 25 90 0 0 chr12 20984717 20984784 -123297705 + AT_rich Low_complexity Low_complexity 1 67 0 186 43 0 0 chr12 20985387 20985410 -123297079 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 1592 164 35 22 chr12 20985484 20985835 -123296654 - MLT1B LTR MaLR -2 465 1 181 359 0 0 chr12 20985843 20985896 -123296593 - L2 LINE L2 -13 3259 3207 2442 63 0 0 chr12 20986412 20986699 -123295790 + AluY SINE Alu 1 287 -24 313 256 80 0 chr12 20987095 20987220 -123295269 - L1M4 LINE L1 -3710 2436 2302 1105 169 73 119 chr12 20987230 20987574 -123294915 + MLT1D LTR MaLR 1 328 -177 389 113 28 0 chr12 20987593 20987664 -123294825 - MLT1D LTR MaLR 0 505 433 2180 107 0 0 chr12 20988132 20988439 -123294050 - AluSx SINE Alu 0 311 5 252 0 0 0 chr12 20988740 20988768 -123293721 + (A)n Simple_repeat Simple_repeat 1 28 0 246 207 35 0 chr12 20988915 20988973 -123293516 + CT-rich Low_complexity Low_complexity 2 61 0 2213 85 19 7 chr12 20991235 20991542 -123290947 + AluY SINE Alu 1 311 0 405 0 0 0 chr12 20991596 20991641 -123290848 + (TG)n Simple_repeat Simple_repeat 2 46 0 296 172 31 16 chr12 20992076 20992140 -123290349 - MLT1K LTR MaLR -335 253 189 213 286 86 36 chr12 20992723 20992863 -123289626 - MIR SINE MIR -60 202 56 534 282 11 23 chr12 20992893 20993067 -123289422 - MER91B DNA MER1_type -15 175 4 2434 93 0 0 chr12 20996476 20996787 -123285702 + AluSq SINE Alu 1 311 -2 291 394 0 30 chr12 20997251 20997383 -123285106 + MIR SINE MIR 16 143 -65 480 286 66 39 chr12 20997666 20997848 -123284641 + MIR SINE MIR 32 218 -44 361 90 30 0 chr12 20999003 20999070 -123283419 + (GA)n Simple_repeat Simple_repeat 2 70 0 216 351 13 0 chr12 21000318 21000395 -123282094 - L2 LINE L2 -4 3309 3232 * 599 326 133 0 chr12 21000390 21000654 -123281835 + L2 LINE L2 1406 1704 -1610 519 213 29 0 chr12 21000686 21000822 -123281667 - LTR37A LTR ERV1 0 426 287 3869 147 28 35 chr12 21000822 21001565 -123280924 + L1MB3 LINE L1 5444 6181 -2 4529 156 42 38 chr12 21001696 21002635 -123279854 - L1MA8 LINE L1 0 6291 5350 1033 216 34 8 chr12 21002644 21002880 -123279609 - LTR37A LTR ERV1 -177 249 8 239 143 0 0 chr12 21002966 21003001 -123279488 + MLT1H LTR MaLR 73 107 -442 2286 94 0 16 chr12 21003001 21003309 -123279180 + AluSg SINE Alu 1 303 -7 1317 249 71 56 chr12 21003325 21003774 -123278715 + MLT1H LTR MaLR 94 549 0 465 329 6 12 chr12 21003775 21003939 -123278550 + L2 LINE L2 2403 2565 -749 33 90 0 0 chr12 21003960 21004049 -123278440 + AT_rich Low_complexity Low_complexity 1 89 0 279 342 37 68 chr12 21004065 21004226 -123278263 + L2 LINE L2 3117 3272 0 819 97 0 0 chr12 21004268 21004382 -123278107 + MER85 DNA T2_type 1 114 -25 209 297 14 40 chr12 21004550 21004624 -123277865 + L2 LINE L2 3234 3305 -8 298 330 28 0 chr12 21005315 21005421 -123277068 + Charlie2 DNA MER1_type 29 137 -2645 1241 201 201 65 chr12 21005530 21006228 -123276261 + Charlie2 DNA MER1_type 1856 2648 -214 21 0 0 0 chr12 21007193 21007214 -123275275 + AT_rich Low_complexity Low_complexity 1 21 0 719 127 0 8 chr12 21007814 21007932 -123274557 - Ricksha DNA DNA -7 3247 3131 890 171 7 0 chr12 21007944 21008096 -123274393 - FRAM SINE Alu -16 160 8 8479 126 30 22 chr12 21008103 21009035 -123273454 - Ricksha DNA DNA -121 3125 2175 4397 84 147 58 chr12 21009035 21009792 -123272697 - LTR12 LTR ERV1 -2 824 1 8479 126 30 22 chr12 21009792 21010280 -123272209 - Ricksha DNA DNA -1071 2175 1693 755 186 5 5 chr12 21010282 21010475 -123272014 - Ricksha DNA DNA -969 285 1 874 130 0 0 chr12 21011857 21011980 -123270509 + THE1B LTR MaLR 1 123 -241 1753 79 32 0 chr12 21062215 21062468 -123220021 - L1MA2 LINE L1 0 6304 6044 182 381 16 24 chr12 21062490 21062616 -123219873 - MIR SINE MIR -65 143 19 2340 45 0 36 chr12 21062937 21063245 -123219244 + AluY SINE Alu 1 297 -14 216 365 0 35 chr12 21063503 21063588 -123218901 + L2 LINE L2 3191 3272 0 435 207 97 62 chr12 21063747 21063892 -123218597 + MIR SINE MIR 57 206 -56 21 36 0 0 chr12 21064426 21064454 -123218035 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 21064566 21064587 -123217902 + AT_rich Low_complexity Low_complexity 1 21 0 194 317 113 28 chr12 21065154 21065296 -123217193 + MIR SINE MIR 59 212 -50 189 0 0 0 chr12 21065851 21065872 -123216617 + (A)n Simple_repeat Simple_repeat 1 21 0 473 276 92 27 chr12 21066457 21066642 -123215847 + MIR SINE MIR 47 243 -19 1407 249 42 9 chr12 21066903 21067237 -123215252 - MLT1A2 LTR MaLR 0 374 30 269 145 75 0 chr12 21067237 21067297 -123215192 - MLT1A1 LTR MaLR -291 74 1 225 183 0 0 chr12 21067834 21067894 -123214595 + (TA)n Simple_repeat Simple_repeat 2 61 0 222 37 0 0 chr12 21067894 21067921 -123214568 + (GA)n Simple_repeat Simple_repeat 2 28 0 230 399 6 12 chr12 21068732 21068895 -123213594 + L2 LINE L2 2692 2853 -461 2358 67 6 22 chr12 21068972 21069287 -123213202 - AluY SINE Alu -1 310 1 257 364 50 0 chr12 21070197 21070296 -123212193 + L2 LINE L2 3160 3263 -9 299 314 66 31 chr12 21070299 21070500 -123211989 - MIR SINE MIR -41 221 16 213 121 0 0 chr12 21070500 21070533 -123211956 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 202 433 28 11 chr12 21070713 21070893 -123211596 - L2 LINE L2 -214 3058 2876 5295 260 37 39 chr12 21071001 21075275 -123207214 - L1 LINE L1 -2958 3830 4 303 229 51 8 chr12 21075343 21075461 -123207028 - L1M4 LINE L1 -1031 5115 4993 549 347 129 27 chr12 21075703 21076325 -123206164 + L3 LINE CR1 187 871 -706 302 295 78 93 chr12 21076802 21076995 -123205494 - L2 LINE L2 0 3313 3124 3813 35 29 2 chr12 21077089 21077568 -123204921 + L1PA3 LINE L1 5664 6155 0 28 48 0 0 chr12 21077863 21077905 -123204584 + AT_rich Low_complexity Low_complexity 1 42 0 421 185 0 0 chr12 21077982 21078047 -123204442 + L1MCa LINE L1 460 524 -5902 1139 270 89 65 chr12 21078067 21078559 -123203930 - MLT1E LTR MaLR 0 593 90 7066 174 81 10 chr12 21078560 21080001 -123202488 + L1MC1 LINE L1 34 1577 -4849 14650 238 37 28 chr12 21080042 21085635 -123196854 + L1P4 LINE L1 7 6158 -658 1243 155 0 5 chr12 21085735 21085942 -123196547 + L1PA15 LINE L1 5958 6163 -2 1780 201 56 21 chr12 21085943 21086817 -123195672 + L1MC1 LINE L1 1701 2734 -3873 4380 160 54 12 chr12 21086831 21088234 -123194255 + L1MA7 LINE L1 4707 6280 -11 2670 227 36 87 chr12 21088264 21089454 -123193035 + L1MC1 LINE L1 2599 3727 -2699 12084 140 26 11 chr12 21089454 21091190 -123191299 - Tigger1 DNA MER2_type 0 2418 647 2186 169 52 5 chr12 21091190 21091593 -123190896 + MSTB LTR MaLR 1 422 -4 12084 140 26 11 chr12 21091593 21091855 -123190634 - Tigger1 DNA MER2_type -1771 647 390 3387 210 32 33 chr12 21091855 21091960 -123190529 + L1MC1 LINE L1 3964 4068 -2358 1533 124 151 112 chr12 21091960 21092372 -123190117 + MSTA LTR MaLR 1 428 0 3387 210 32 33 chr12 21092372 21092857 -123189632 + L1MC1 LINE L1 4068 4555 -1871 2227 108 51 17 chr12 21092857 21093209 -123189280 - THE1B LTR MaLR 0 364 1 3387 210 32 33 chr12 21093209 21093514 -123188975 + L1MC1 LINE L1 4555 4859 -1567 * 5708 192 19 15 chr12 21093512 21094985 -123187504 + L1MC1 LINE L1 5133 6613 0 454 243 301 12 chr12 21095304 21095477 -123187012 - MIR SINE MIR -28 234 12 215 296 52 22 chr12 21095525 21095660 -123186829 + L2 LINE L2 1914 2052 -1262 409 280 107 7 chr12 21095903 21096053 -123186436 - L2 LINE L2 -10 3303 3139 2164 163 5 25 chr12 21098719 21099117 -123183372 + MLT1B LTR MaLR 1 390 0 703 65 0 40 chr12 21099239 21099363 -123183126 + (TA)n Simple_repeat Simple_repeat 1 119 0 328 259 0 9 chr12 21099391 21099499 -123182990 - L1ME LINE L1 -304 5817 5711 190 349 0 16 chr12 21099501 21099564 -123182925 + MIR SINE MIR 47 108 -154 316 229 115 61 chr12 21100894 21101049 -123181440 - HAL1b LINE L1 -3 6118 1187 344 211 116 0 chr12 21101117 21101212 -123181277 + MIR SINE MIR 156 261 -1 21 36 0 0 chr12 21101478 21101506 -123180983 + AT_rich Low_complexity Low_complexity 1 28 0 356 286 53 8 chr12 21101622 21101755 -123180734 - MIR SINE MIR -2 260 122 2218 251 98 33 chr12 21101780 21102477 -123180012 + L1MB8 LINE L1 21 762 -6097 * 4690 189 44 20 chr12 21102473 21103789 -123178700 + L1MB8 LINE L1 5160 6528 -461 429 20 0 0 chr12 21103789 21103839 -123178650 + (CA)n Simple_repeat Simple_repeat 2 51 0 4690 189 44 20 chr12 21103839 21104280 -123178209 + L1MB8 LINE L1 6528 6957 -32 1768 168 50 25 chr12 21104281 21104639 -123177850 + MLT2D LTR ERVL 5 371 -43 280 93 19 19 chr12 21104642 21104696 -123177793 + (TA)n Simple_repeat Simple_repeat 1 54 0 260 126 89 0 chr12 21104705 21104757 -123177732 + MLT2C2 LTR ERVL 417 464 0 185 270 27 27 chr12 21104784 21104858 -123177631 - MIR SINE MIR -123 139 66 22 0 0 0 chr12 21105340 21105362 -123177127 + AT_rich Low_complexity Low_complexity 1 22 0 192 402 68 24 chr12 21107417 21107713 -123174776 - L3 LINE CR1 -81 1496 1188 22 35 0 0 chr12 21107716 21107745 -123174744 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr12 21107758 21107790 -123174699 + AT_rich Low_complexity Low_complexity 1 32 0 301 237 118 0 chr12 21110279 21110372 -123172117 + MIR SINE MIR 118 221 -41 21 0 0 0 chr12 21111232 21111253 -123171236 + AT_rich Low_complexity Low_complexity 1 21 0 288 242 0 0 chr12 21111722 21111817 -123170672 + (CATATA)n Simple_repeat Simple_repeat 5 99 0 27 49 0 0 chr12 21112157 21112198 -123170291 + AT_rich Low_complexity Low_complexity 1 41 0 259 328 144 29 chr12 21112291 21112465 -123170024 - MIR SINE MIR -46 216 23 2089 104 0 14 chr12 21112704 21113027 -123169462 - AluSx SINE Alu 0 319 1 2089 117 3 0 chr12 21113059 21113342 -123169147 - AluSp SINE Alu -8 305 22 227 349 48 24 chr12 21113394 21113477 -123169012 - L2 LINE L2 -49 3223 3139 240 324 27 54 chr12 21114784 21114932 -123167557 - L2 LINE L2 -459 2855 2712 297 244 0 122 chr12 21116207 21116322 -123166167 + MER5A DNA MER1_type 9 109 -80 180 238 148 30 chr12 21117252 21117353 -123165136 - L2 LINE L2 -1 3312 3200 1951 132 24 3 chr12 21117354 21117642 -123164847 - AluSx SINE Alu -18 294 1 24 0 0 0 chr12 21117973 21117997 -123164492 + AT_rich Low_complexity Low_complexity 1 24 0 2534 46 0 3 chr12 21118395 21118697 -123163792 - AluY SINE Alu -10 301 1 233 365 21 36 chr12 21119775 21119967 -123162522 + L2 LINE L2 2658 2846 -468 236 407 106 21 chr12 21120403 21120639 -123161850 - L2 LINE L2 -1 3271 3016 23 33 0 0 chr12 21121803 21121833 -123160656 + AT_rich Low_complexity Low_complexity 1 30 0 5472 164 27 26 chr12 21122039 21122556 -123159933 + L1MC2 LINE L1 5186 5701 -643 2136 75 7 4 chr12 21122556 21122836 -123159653 - AluSc SINE Alu -28 281 1 5472 164 27 26 chr12 21122836 21123068 -123159421 + L1MC2 LINE L1 5701 5931 -413 1902 208 5 37 chr12 21123068 21123477 -123159012 + MSTD LTR MaLR 1 396 0 5472 164 27 26 chr12 21123477 21123875 -123158614 + L1MC2 LINE L1 5931 6336 -8 22 70 0 0 chr12 21124187 21124230 -123158259 + AT_rich Low_complexity Low_complexity 1 43 0 603 33 11 22 chr12 21126013 21126105 -123156384 + (TATAA)n Simple_repeat Simple_repeat 1 91 0 1063 266 67 36 chr12 21126108 21126529 -123155960 + L1MC4a LINE L1 5450 5883 -1925 20627 169 28 25 chr12 21126569 21128986 -123153503 - L1 LINE L1 -2018 5547 3140 1176 54 0 0 chr12 21128986 21129134 -123153355 - L1PA4 LINE L1 -3 6152 6005 20627 169 28 25 chr12 21129134 21132100 -123150389 - L1 LINE L1 -4425 3140 13 306 0 0 0 chr12 21132501 21132535 -123149954 + (TG)n Simple_repeat Simple_repeat 2 35 0 454 244 30 61 chr12 21132607 21132738 -123149751 + L2 LINE L2 3187 3313 0 34 24 0 0 chr12 21133788 21133829 -123148660 + AT_rich Low_complexity Low_complexity 1 41 0 644 270 22 22 chr12 21135099 21135277 -123147212 - MER5B DNA MER1_type 0 178 1 1172 190 20 92 chr12 21135300 21135605 -123146884 - L1M1 LINE L1 -7266 299 17 342 67 0 0 chr12 21135928 21135973 -123146516 + (TG)n Simple_repeat Simple_repeat 2 46 0 2277 107 10 0 chr12 21136162 21136470 -123146019 + AluSp SINE Alu 1 311 -2 788 164 14 14 chr12 21136617 21136757 -123145732 + LTR40a LTR ERVL 371 510 -9 305 221 0 107 chr12 21137608 21137730 -123144759 + MER31-int LTR ERV1 3394 3502 -1434 265 311 47 34 chr12 21138065 21138213 -123144276 + MER31-int LTR ERV1 3841 3990 -946 376 157 124 11 chr12 21138456 21138545 -123143944 + LTR37B LTR ERV1 64 162 -306 351 261 128 15 chr12 21138680 21138883 -123143606 + LTR37B LTR ERV1 243 468 0 5428 51 14 9 chr12 21139129 21139821 -123142668 + L1PA7 LINE L1 5402 6097 -57 582 83 0 0 chr12 21139858 21139942 -123142547 + L1PA7 LINE L1 6070 6153 -1 37 0 0 0 chr12 21140194 21140231 -123142258 + AT_rich Low_complexity Low_complexity 1 37 0 210 147 0 0 chr12 21140475 21140509 -123141980 + (TG)n Simple_repeat Simple_repeat 1 34 0 2383 139 8 5 chr12 21140509 21140883 -123141606 - THE1C LTR MaLR 0 375 1 9093 127 56 36 chr12 21140888 21142432 -123140057 - THE1C-int LTR MaLR -6 1574 1 2555 125 3 8 chr12 21142432 21142809 -123139680 - THE1C LTR MaLR 0 375 1 15739 145 36 12 chr12 21143393 21145754 -123136735 - Tigger4(Zombi) DNA MER2_type 0 2731 298 2350 173 26 17 chr12 21145754 21146176 -123136313 + MSTB LTR MaLR 1 426 0 15739 145 36 12 chr12 21146176 21146482 -123136007 - Tigger4(Zombi) DNA MER2_type -2433 298 1 928 192 0 0 chr12 21146547 21146719 -123135770 - AluJb SINE Alu 0 305 134 23 54 0 0 chr12 21146908 21146945 -123135544 + AT_rich Low_complexity Low_complexity 1 37 0 2156 133 32 3 chr12 21146960 21147305 -123135184 + THE1A LTR MaLR 1 355 0 11350 95 16 1 chr12 21147305 21148861 -123133628 + THE1A-int LTR MaLR 1 1580 0 2264 114 14 6 chr12 21148861 21149213 -123133276 + THE1A LTR MaLR 1 355 0 501 238 87 101 chr12 21149724 21150081 -123132408 - MLT2C1 LTR ERVL -1 396 45 * 596 227 13 32 chr12 21149942 21150096 -123132393 - MLT1E3 LTR MaLR -423 201 51 413 252 99 0 chr12 21150100 21150231 -123132258 - MLT2F LTR ERVL -519 144 1 4723 183 68 15 chr12 21150530 21151547 -123130942 - L1MC1 LINE L1 0 6333 5263 2498 69 0 0 chr12 21151571 21151876 -123130613 - AluY SINE Alu -6 305 1 21 0 0 0 chr12 21151912 21151933 -123130556 + AT_rich Low_complexity Low_complexity 1 21 0 1491 213 10 17 chr12 21151933 21152234 -123130255 - AluJo SINE Alu -13 299 1 25 0 0 0 chr12 21152375 21152400 -123130089 + AT_rich Low_complexity Low_complexity 1 25 0 1415 355 52 30 chr12 21152967 21153954 -123128535 + HERV16 LTR ERVL 3 1010 -3986 7122 168 42 8 chr12 21154016 21156316 -123126173 - L1MA4 LINE L1 -7 6475 4102 4639 223 33 33 chr12 21156309 21157822 -123124667 - L1MA4 LINE L1 -3841 2487 974 * 2357 150 57 8 chr12 21157822 21158223 -123124266 - MSTA LTR MaLR 0 428 8 5667 162 13 17 chr12 21158238 21159221 -123123268 - L1MA4 LINE L1 -4349 979 1 1176 218 33 64 chr12 21159224 21159554 -123122935 - MLT1A1 LTR MaLR -45 320 1 634 320 79 67 chr12 21159943 21160574 -123121915 + HERV16 LTR ERVL 1321 1959 -3037 1523 332 187 26 chr12 21161110 21161167 -123121322 + L2 LINE L2 1806 1852 -1461 2227 126 70 34 chr12 21161167 21161580 -123120909 - MSTA LTR MaLR 0 428 1 1523 332 187 26 chr12 21161580 21162809 -123119680 + L2 LINE L2 1852 3312 -1 221 314 8 51 chr12 21163264 21163382 -123119107 + MIR SINE MIR 86 198 -64 225 263 0 18 chr12 21163464 21163521 -123118968 + MIR SINE MIR 21 76 -186 242 121 0 0 chr12 21163696 21163729 -123118760 + MIR SINE MIR 114 146 -116 223 211 0 0 chr12 21163700 21163738 -123118751 + MIR3 SINE MIR 119 156 -52 * 26 0 0 0 chr12 21166035 21166061 -123116428 + AT_rich Low_complexity Low_complexity 1 26 0 388 338 27 27 chr12 21166165 21166384 -123116105 + L2 LINE L2 1599 1817 -1497 402 378 50 8 chr12 21166638 21166900 -123115589 - MLT1K LTR MaLR -165 423 151 276 336 56 8 chr12 21167047 21167172 -123115317 - MIR SINE MIR -130 132 2 563 165 21 0 chr12 21167201 21167298 -123115191 + AluJ/FLAM SINE Alu 2 100 -212 393 182 10 125 chr12 21167399 21167591 -123114898 + FAM SINE Alu 4 173 -2 201 184 0 41 chr12 21168064 21168113 -123114376 + L2 LINE L2 3267 3313 0 236 120 20 0 chr12 21168227 21168277 -123114212 + (CAGGA)n Simple_repeat Simple_repeat 5 55 0 508 180 5 53 chr12 21168284 21168473 -123114016 + G-rich Low_complexity Low_complexity 1 180 0 2967 165 88 2 chr12 21168544 21169066 -123113423 - HUERS-P2 LTR ERV1 -1487 1601 1035 1692 163 3 10 chr12 21169249 21169543 -123112946 - AluJb SINE Alu -12 300 9 187 157 39 0 chr12 21170282 21170333 -123112156 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 189 0 0 0 chr12 21170470 21170491 -123111998 + (GA)n Simple_repeat Simple_repeat 2 22 0 26 74 0 0 chr12 21171855 21171909 -123110580 + AT_rich Low_complexity Low_complexity 1 54 0 2484 199 47 34 chr12 21173353 21174007 -123108482 + L1ME1 LINE L1 4504 5166 -980 6292 225 21 24 chr12 21174019 21176744 -123105745 + L1PB3 LINE L1 4 1776 -5087 1280 117 11 5 chr12 21176768 21176956 -123105533 + AluSg/x SINE Alu 118 306 -6 12774 218 38 11 chr12 21176958 21178050 -123104439 + L1PB3 LINE L1 1791 2852 -4018 2271 83 3 10 chr12 21178050 21178183 -123104306 + AluY SINE Alu 1 133 -178 2338 94 13 0 chr12 21178183 21178491 -123103998 + AluSp SINE Alu 1 312 -1 2271 83 3 10 chr12 21178491 21178657 -123103832 + AluY SINE Alu 133 298 -13 12774 218 38 11 chr12 21178657 21182444 -123100045 + L1PB3 LINE L1 2852 6866 -4 1550 202 75 76 chr12 21182454 21182694 -123099795 + L1ME1 LINE L1 5152 5391 -775 1596 245 21 43 chr12 21182694 21183208 -123099281 + MLT1D LTR MaLR 3 505 0 1550 202 75 76 chr12 21183208 21183667 -123098822 + L1ME1 LINE L1 5391 5883 -283 358 42 21 0 chr12 21184604 21184652 -123097837 - MADE1 DNA Mariner -30 50 2 26 0 0 0 chr12 21185873 21185899 -123096590 + AT_rich Low_complexity Low_complexity 1 26 0 2103 115 6 22 chr12 21186008 21186321 -123096168 + AluSg SINE Alu 1 308 -2 229 320 100 31 chr12 21186400 21186790 -123095699 + L1ME LINE L1 5385 5801 -320 212 400 91 9 chr12 21187484 21187714 -123094775 + L2 LINE L2 111 359 -2955 730 308 116 11 chr12 21187739 21188119 -123094370 + LTR16A LTR ERVL 26 445 -5 631 285 45 0 chr12 21188125 21188304 -123094185 + HERV16 LTR ERVL 2 188 -4808 602 330 114 13 chr12 21188457 21188842 -123093647 + LTR16A LTR ERVL 1 424 -26 1426 170 49 59 chr12 21189732 21190038 -123092451 - AluJo SINE Alu -9 303 1 212 303 0 40 chr12 21190430 21190506 -123091983 - L2 LINE L2 -1834 1480 1408 2014 116 0 0 chr12 21191518 21191786 -123090703 - AluSx SINE Alu -8 304 37 229 346 89 34 chr12 21192210 21192389 -123090100 - L3 LINE CR1 -701 876 688 393 218 202 32 chr12 21193569 21193757 -123088732 - MIR SINE MIR -6 256 37 22 35 0 0 chr12 21194336 21194365 -123088124 + AT_rich Low_complexity Low_complexity 1 29 0 275 348 78 33 chr12 21195014 21195284 -123087205 - L2 LINE L2 -2482 832 551 7125 228 56 44 chr12 21196248 21199125 -123083364 + L1MC/D LINE L1 2636 5530 -745 2286 124 14 0 chr12 21199126 21199490 -123082999 - L1MA3 LINE L1 0 6305 5937 191 167 0 28 chr12 21199751 21199787 -123082702 - MIR SINE MIR -63 145 111 1789 175 34 0 chr12 21200276 21200567 -123081922 + AluJb SINE Alu 4 304 -8 373 269 13 20 chr12 21201083 21201232 -123081257 + HAL1b LINE L1 724 871 -477 853 260 86 27 chr12 21201438 21201730 -123080759 + Charlie1a DNA MER1_type 1 309 -1146 7055 155 40 2 chr12 21201736 21202882 -123079607 + L1MA3 LINE L1 18 1207 -6358 * 12219 159 39 25 chr12 21202880 21206741 -123075748 + L1MA3 LINE L1 2477 6393 -1172 2412 32 3 0 chr12 21206727 21207010 -123075479 + L1P2 LINE L1 5444 5727 -428 * 6394 81 24 0 chr12 21207112 21208245 -123074244 + L1PA4 LINE L1 4996 6151 -4 6268 142 12 17 chr12 21208248 21209588 -123072901 + L1MA3 LINE L1 6392 7724 0 3864 232 65 21 chr12 21209592 21210704 -123071785 + Charlie1a DNA MER1_type 293 1453 -2 863 177 143 51 chr12 21210884 21211178 -123071311 - L1MDa LINE L1 -4710 1830 1510 682 198 0 0 chr12 21211176 21211302 -123071187 - L1MDa LINE L1 -6400 140 15 * 233 241 12 48 chr12 21211302 21211385 -123071104 + L1 LINE L1 4890 4969 -1177 2177 110 10 3 chr12 21211417 21211725 -123070764 - AluSq SINE Alu -3 310 1 23 33 0 0 chr12 21211731 21211761 -123070728 + AT_rich Low_complexity Low_complexity 1 30 0 305 286 25 80 chr12 21211765 21211964 -123070525 + L1MC/D LINE L1 5028 5215 -931 815 275 40 40 chr12 21212003 21212349 -123070140 + L1MC/D LINE L1 5255 5600 -2208 297 280 60 0 chr12 21212350 21212450 -123070039 + L1MC/D LINE L1 5635 5740 -2068 290 116 74 8 chr12 21213605 21213726 -123068763 + GA-rich Low_complexity Low_complexity 1 129 0 297 75 0 0 chr12 21214099 21214139 -123068350 + (CA)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr12 21214144 21214165 -123068324 + AT_rich Low_complexity Low_complexity 1 21 0 188 304 18 0 chr12 21214945 21215001 -123067488 - L2 LINE L2 0 3272 3216 183 353 101 8 chr12 21215058 21215177 -123067312 + MIR SINE MIR 16 145 -63 234 0 0 0 chr12 21216482 21216508 -123065981 + (CA)n Simple_repeat Simple_repeat 1 26 0 4336 97 3 7 chr12 21216793 21217399 -123065090 + L1P3 LINE L1 755 1358 -5103 196 239 22 0 chr12 21217897 21217943 -123064546 - L2 LINE L2 -12 3301 3255 193 258 0 11 chr12 21218009 21218191 -123064298 + (TA)n Simple_repeat Simple_repeat 1 180 0 464 321 33 22 chr12 21218195 21218379 -123064110 + L3 LINE CR1 1041 1226 -351 21 89 0 0 chr12 21218612 21218668 -123063821 + AT_rich Low_complexity Low_complexity 1 56 0 22 56 0 0 chr12 21218779 21218815 -123063674 + AT_rich Low_complexity Low_complexity 1 36 0 31 26 0 0 chr12 21218952 21218990 -123063499 + AT_rich Low_complexity Low_complexity 1 38 0 38 51 0 0 chr12 21219423 21219482 -123063007 + AT_rich Low_complexity Low_complexity 1 59 0 306 217 0 0 chr12 21219523 21219592 -123062897 + (CATATA)n Simple_repeat Simple_repeat 5 73 0 2437 67 0 3 chr12 21219592 21219889 -123062600 - AluY SINE Alu -15 296 1 220 35 0 0 chr12 21220124 21220153 -123062336 - L2 LINE L2 0 3313 3285 * 4182 301 156 22 chr12 21220150 21221633 -123060856 - L2 LINE L2 -572 2742 884 2832 14 26 0 chr12 21221633 21221983 -123060506 + L1PA2 LINE L1 5794 6152 -3 4182 301 156 22 chr12 21221983 21222635 -123059854 - L2 LINE L2 -2430 884 321 225 65 0 0 chr12 21222678 21222709 -123059780 + (TC)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr12 21222709 21222733 -123059756 + (CA)n Simple_repeat Simple_repeat 1 24 0 343 129 0 29 chr12 21222885 21222955 -123059534 + (TCC)n Simple_repeat Simple_repeat 3 70 0 406 329 58 13 chr12 21222956 21223181 -123059308 - LTR16C LTR ERVL -50 441 207 902 176 0 0 chr12 21223226 21223385 -123059104 - L1PB4 LINE L1 0 6156 5998 530 295 13 7 chr12 21223411 21223560 -123058929 + L2 LINE L2 680 829 -2485 279 261 94 36 chr12 21223705 21223843 -123058646 + MLT1L LTR MaLR 231 451 -159 1100 274 97 69 chr12 21224032 21224293 -123058196 + L1MEc LINE L1 1656 1908 -4632 2012 135 7 3 chr12 21224293 21224589 -123057900 + AluSq SINE Alu 1 297 -16 1100 274 97 69 chr12 21224589 21226001 -123056488 + L1MEc LINE L1 1908 3381 -3159 805 283 6 0 chr12 21226010 21226187 -123056302 - MER5A DNA MER1_type 0 189 12 30 45 0 0 chr12 21226216 21226260 -123056229 + AT_rich Low_complexity Low_complexity 1 44 0 617 162 0 9 chr12 21226308 21226413 -123056076 + Tigger2 DNA MER2_type 2 105 -2613 11895 134 56 96 chr12 21226514 21227187 -123055302 + Tigger2 DNA MER2_type 395 1094 -1624 1475 141 18 114 chr12 21227187 21227326 -123055163 + AluJb SINE Alu 1 91 -211 771 112 0 0 chr12 21227326 21227442 -123055047 + (TA)n Simple_repeat Simple_repeat 1 116 0 1475 141 18 114 chr12 21227442 21227636 -123054853 + AluJb SINE Alu 91 302 0 11895 134 56 96 chr12 21227636 21227898 -123054591 + Tigger2 DNA MER2_type 1094 1365 -1353 775 235 6 6 chr12 21227898 21228064 -123054425 - FRAM SINE Alu -10 166 1 11895 134 56 96 chr12 21228064 21229384 -123053105 + Tigger2 DNA MER2_type 1365 2718 0 671 280 101 3 chr12 21229554 21229850 -123052639 + L2 LINE L2 1181 1505 -1809 814 188 80 6 chr12 21229927 21230103 -123052386 + MER5A DNA MER1_type 1 189 0 2025 186 23 30 chr12 21230430 21230484 -123052005 - MLT1C LTR MaLR 0 467 414 1325 81 63 18 chr12 21230484 21230706 -123051783 + L1PA10 LINE L1 5937 6168 0 2025 186 23 30 chr12 21230706 21231086 -123051403 - MLT1C LTR MaLR -53 414 36 21 36 0 0 chr12 21231520 21231548 -123050941 + AT_rich Low_complexity Low_complexity 1 28 0 765 246 25 20 chr12 21231618 21231894 -123050595 - Charlie7 DNA MER1_type -2078 534 217 373 274 9 9 chr12 21231937 21232050 -123050439 + GA-rich Low_complexity Low_complexity 2 114 0 24 0 0 0 chr12 21234831 21234855 -123047634 + AT_rich Low_complexity Low_complexity 1 24 0 2289 85 20 7 chr12 21234924 21235049 -123047440 + AluY SINE Alu 1 123 -188 353 22 22 0 chr12 21235049 21235095 -123047394 + (CA)n Simple_repeat Simple_repeat 2 48 0 2289 85 20 7 chr12 21235095 21235274 -123047215 + AluY SINE Alu 123 309 -2 270 0 0 0 chr12 21235400 21235430 -123047059 + (A)n Simple_repeat Simple_repeat 1 30 0 2383 75 3 3 chr12 21236372 21236677 -123045812 - AluY SINE Alu -6 305 1 238 295 48 0 chr12 21237998 21238103 -123044386 + MIR SINE MIR 37 152 -62 220 217 277 12 chr12 21238249 21238332 -123044157 + MIR3 SINE MIR 2 106 -102 25 0 0 0 chr12 21239609 21239634 -123042855 + AT_rich Low_complexity Low_complexity 1 25 0 418 308 99 16 chr12 21239652 21239905 -123042584 + L1M4 LINE L1 4748 5021 -1125 6218 246 158 15 chr12 21239905 21242119 -123040370 + L1PA12 LINE L1 6 3071 -4510 595 167 61 122 chr12 21242127 21242390 -123040099 + L1MA9 LINE L1 6061 6307 -5 587 190 0 0 chr12 21242415 21242515 -123039974 + FLAM_A SINE Alu 20 119 -23 220 262 0 16 chr12 21242880 21242941 -123039548 - MER5A DNA MER1_type 0 189 130 2107 127 0 22 chr12 21244454 21244769 -123037720 + AluSc SINE Alu 1 308 -1 367 227 57 11 chr12 21246079 21246167 -123036322 - L2 LINE L2 -14 3299 3208 22 0 0 0 chr12 21246313 21246335 -123036154 + AT_rich Low_complexity Low_complexity 1 22 0 609 81 0 0 chr12 21247175 21247262 -123035227 + L1PA3 LINE L1 6069 6155 0 352 283 57 9 chr12 21247320 21247426 -123035063 - L2 LINE L2 -2 3311 3201 707 343 29 0 chr12 21247872 21248152 -123034337 + MLT1J LTR MaLR 224 511 0 483 259 177 6 chr12 21249784 21249942 -123032547 + MIR SINE MIR 2 186 -76 269 179 60 0 chr12 21251227 21251294 -123031195 + L1MA5A LINE L1 6224 6294 -3 785 238 29 0 chr12 21252227 21252399 -123030090 + MER45A DNA AcHobo 1 177 -1 23 54 0 0 chr12 21252540 21252577 -123029912 + AT_rich Low_complexity Low_complexity 1 37 0 203 269 19 0 chr12 21252695 21252747 -123029742 + CT-rich Low_complexity Low_complexity 3 55 0 324 374 89 0 chr12 21252750 21252873 -123029616 - L2 LINE L2 -23 3249 3116 199 398 56 64 chr12 21253444 21253786 -123028703 - L2 LINE L2 -15 3257 2919 269 192 19 0 chr12 21254321 21254373 -123028116 - L3 LINE CR1 -2 1575 1523 2180 102 0 3 chr12 21256172 21256518 -123025971 - AluSx SINE Alu 0 345 1 206 375 41 66 chr12 21257248 21257351 -123025138 + L2 LINE L2 2360 2464 -850 1264 226 107 3 chr12 21257351 21257678 -123024811 + MLT1A1 LTR MaLR 5 365 0 206 375 41 66 chr12 21257678 21257817 -123024672 + L2 LINE L2 2464 2596 -718 333 0 0 0 chr12 21258098 21258135 -123024354 + (CA)n Simple_repeat Simple_repeat 2 38 0 1697 175 110 22 chr12 21258725 21259189 -123023300 + MLT2A2 LTR ERVL 1 520 -34 858 142 53 60 chr12 21259225 21259527 -123022962 + HERV9 LTR ERV1 840 1139 -5757 294 213 0 0 chr12 21259528 21259589 -123022900 + HERV9 LTR ERV1 7504 7564 -835 * 4795 127 16 127 chr12 21259585 21261743 -123020746 + pTR5 LTR ERV1 504 2606 0 350 0 0 0 chr12 21261743 21261782 -123020707 + MLT2A2 LTR ERVL 415 453 0 2342 114 114 5 chr12 21261959 21262345 -123020144 - MSTA LTR MaLR 0 428 1 2081 181 58 29 chr12 21262773 21263221 -123019268 - LOR1b LTR ERV1 0 461 1 249 345 118 20 chr12 21263227 21263430 -123019059 + MIR SINE MIR 25 247 -15 289 339 16 0 chr12 21263503 21263624 -123018865 - L2 LINE L2 -223 3049 2927 231 81 0 27 chr12 21263630 21263667 -123018822 - LTR28 LTR ERV1 0 1020 985 510 224 238 14 chr12 21264643 21264853 -123017636 + MIR SINE MIR 3 259 -3 22 94 0 0 chr12 21266259 21266323 -123016166 + AT_rich Low_complexity Low_complexity 1 64 0 231 36 0 0 chr12 21267505 21267533 -123014956 + (CA)n Simple_repeat Simple_repeat 2 29 0 344 333 49 0 chr12 21268134 21268278 -123014211 + L1M3e LINE L1 301 451 -6579 346 207 0 69 chr12 21268429 21268545 -123013944 - L1ME LINE L1 -301 5820 5713 1336 125 5 0 chr12 21268572 21268764 -123013725 - MSTB1 LTR MaLR -13 419 227 764 125 0 0 chr12 21268785 21268897 -123013592 - MSTB1 LTR MaLR -320 112 1 486 180 0 23 chr12 21269283 21269411 -123013078 + CT-rich Low_complexity Low_complexity 3 127 0 2159 93 10 0 chr12 21269444 21269735 -123012754 + AluSx SINE Alu 1 294 -18 231 265 0 0 chr12 21270670 21270719 -123011770 - L3 LINE CR1 -19 1558 1510 191 235 0 15 chr12 21274750 21274818 -123007671 + (TG)n Simple_repeat Simple_repeat 1 67 0 678 181 147 17 chr12 21274919 21275096 -123007393 - Charlie5 DNA MER1_type 0 2623 2424 2373 198 2 2 chr12 21275196 21275656 -123006833 - L1P LINE L1 -1217 4929 4470 948 249 85 14 chr12 21275805 21276159 -123006330 - LTR37A LTR ERV1 0 426 48 1921 240 67 52 chr12 21276167 21276784 -123005705 + MLT1E2 LTR MaLR 1 626 0 1869 103 56 56 chr12 21278064 21278366 -123004123 + AluSx SINE Alu 1 302 -10 348 137 50 35 chr12 21278650 21278935 -123003554 + (TA)n Simple_repeat Simple_repeat 1 289 0 1170 155 27 133 chr12 21279037 21279404 -123003085 + MLT1A1 LTR MaLR 38 365 0 227 255 0 0 chr12 21279880 21279931 -123002558 + CT-rich Low_complexity Low_complexity 2 52 0 334 333 75 33 chr12 21280655 21280895 -123001594 + L2 LINE L2 2344 2593 -721 352 272 80 16 chr12 21280956 21281081 -123001408 + MIR SINE MIR 105 237 -25 2299 85 3 0 chr12 21281293 21281586 -123000903 - AluSp SINE Alu -16 297 4 212 226 16 57 chr12 21282541 21282665 -122999824 + (TTTA)n Simple_repeat Simple_repeat 4 122 0 606 180 8 23 chr12 21282673 21282801 -122999688 - FLAM_A SINE Alu -6 136 11 722 58 16 50 chr12 21282986 21283107 -122999382 - L1P LINE L1 -765 5409 5293 751 153 8 0 chr12 21283123 21283247 -122999242 - AluSq/x SINE Alu -187 125 1 4937 130 20 4 chr12 21283247 21284055 -122998434 - L1P LINE L1 -846 5300 4480 276 252 96 15 chr12 21284518 21284653 -122997836 + L1ME4a LINE L1 5976 6121 0 388 174 22 0 chr12 21287945 21288037 -122994452 + (TA)n Simple_repeat Simple_repeat 1 94 0 206 303 15 45 chr12 21288288 21288354 -122994135 - L3 LINE CR1 -80 1497 1434 194 360 50 29 chr12 21288359 21288498 -122993991 - L3 LINE CR1 -418 1159 1018 247 333 72 13 chr12 21288652 21288805 -122993684 - L3 LINE CR1 -580 997 836 593 246 0 0 chr12 21289001 21289168 -122993321 + FLAM_A SINE Alu 2 168 0 4054 130 47 14 chr12 21289179 21289748 -122992741 + L1MA4 LINE L1 5564 6162 -138 2134 123 25 38 chr12 21289748 21290115 -122992374 - THE1B LTR MaLR -2 362 1 4054 130 47 14 chr12 21290115 21290254 -122992235 + L1MA4 LINE L1 6162 6295 -5 683 239 122 32 chr12 21291367 21291555 -122990934 + MER20 DNA MER1_type 1 205 -14 227 266 229 0 chr12 21291667 21291776 -122990713 + MIR SINE MIR 129 262 0 461 122 21 64 chr12 21291925 21292113 -122990376 + (TA)n Simple_repeat Simple_repeat 1 180 0 720 253 0 35 chr12 21292355 21292525 -122989964 - FRAM SINE Alu -2 164 1 493 307 58 70 chr12 21292922 21293251 -122989238 + L3 LINE CR1 612 936 -641 195 339 0 0 chr12 21293303 21293359 -122989130 + L3 LINE CR1 1059 1114 -463 390 278 110 48 chr12 21293372 21293581 -122988908 + MIR SINE MIR 38 259 -3 348 246 82 16 chr12 21293574 21293696 -122988793 - MIR SINE MIR -24 238 109 * 303 133 0 0 chr12 21294256 21294301 -122988188 + Charlie5 DNA MER1_type 165 209 -2403 21 57 0 0 chr12 21297606 21297641 -122984848 + AT_rich Low_complexity Low_complexity 1 35 0 341 328 11 101 chr12 21298848 21299037 -122983452 - MER5A DNA MER1_type -2 187 16 378 232 0 89 chr12 21299244 21299356 -122983133 + MIR SINE MIR 88 189 -73 201 298 53 61 chr12 21299441 21299572 -122982917 + MIR SINE MIR 98 227 -35 542 276 131 45 chr12 21300514 21300866 -122981623 - L2 LINE L2 -462 2852 2471 393 364 18 12 chr12 21301726 21301891 -122980598 + MIR3 SINE MIR 15 180 -28 264 310 54 16 chr12 21302149 21302278 -122980211 - ERVL LTR ERVL -2046 3718 3585 498 226 31 92 chr12 21302337 21302504 -122979985 - MER112 DNA MER1_type -14 246 97 1648 165 7 37 chr12 21302504 21302824 -122979665 + AluSx SINE Alu 1 311 0 498 226 31 92 chr12 21302824 21302915 -122979574 - MER112 DNA MER1_type -163 97 2 950 341 40 17 chr12 21302917 21303086 -122979403 - ERVL LTR ERVL -2271 3493 3329 1498 50 0 0 chr12 21303086 21303268 -122979221 + AluY SINE Alu 119 300 -11 950 341 40 17 chr12 21303268 21303573 -122978916 - ERVL LTR ERVL -2435 3329 3008 254 296 31 0 chr12 21303588 21303686 -122978803 - L1M4 LINE L1 -3872 2274 2174 761 286 38 32 chr12 21304523 21304951 -122977538 + L1MEc LINE L1 948 1476 -1014 2211 94 7 0 chr12 21304951 21305248 -122977241 + AluSq SINE Alu 1 299 -14 761 286 38 32 chr12 21305248 21305549 -122976940 + L1MEc LINE L1 1476 1774 -716 907 271 23 55 chr12 21305764 21306074 -122976415 - HsTC2c DNA Tc2 -3 726 427 790 290 114 38 chr12 21306078 21307355 -122975134 + L1MEc LINE L1 2378 3752 -2377 1089 299 84 44 chr12 21307359 21309182 -122973307 + L1MEc LINE L1 4038 5934 -219 198 0 0 0 chr12 21309758 21309780 -122972709 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 2579 45 3 0 chr12 21309794 21310103 -122972386 + AluY SINE Alu 1 310 -1 543 163 0 0 chr12 21310110 21310196 -122972293 - FRAM SINE Alu -57 119 34 752 158 0 8 chr12 21310449 21310582 -122971907 + FLAM_A SINE Alu 11 142 0 404 254 8 40 chr12 21310676 21310802 -122971687 + FLAM_A SINE Alu 13 134 -8 21 0 0 0 chr12 21310891 21310912 -122971577 + AT_rich Low_complexity Low_complexity 1 21 0 2905 152 18 2 chr12 21311952 21312446 -122970043 - L1MB3 LINE L1 0 6183 5682 2383 62 0 37 chr12 21313543 21313864 -122968625 - AluY SINE Alu 0 311 3 309 275 221 0 chr12 21314024 21314173 -122968316 - MIR SINE MIR -44 218 37 251 369 5 56 chr12 21314181 21314376 -122968113 + L2 LINE L2 2465 2649 -665 1889 119 44 7 chr12 21315304 21315597 -122966892 - AluSx SINE Alu -8 304 1 180 316 94 43 chr12 21315609 21315726 -122966763 - MER5B DNA MER1_type -6 172 50 185 132 26 0 chr12 21316994 21317032 -122965457 + (TA)n Simple_repeat Simple_repeat 1 39 0 194 256 0 0 chr12 21317611 21317650 -122964839 + L2 LINE L2 3192 3230 -83 198 0 0 0 chr12 21317975 21317997 -122964492 + (T)n Simple_repeat Simple_repeat 1 22 0 4955 168 71 31 chr12 21318729 21320203 -122962286 - L1MA9 LINE L1 0 6312 4792 410 297 63 17 chr12 21320293 21320468 -122962021 + MIR SINE MIR 74 256 -6 23 33 0 0 chr12 21320860 21320890 -122961599 + AT_rich Low_complexity Low_complexity 1 30 0 1998 132 10 13 chr12 21321057 21321367 -122961122 - AluSg SINE Alu -1 309 1 204 396 43 14 chr12 21322745 21322884 -122959605 - L3 LINE CR1 -7 1570 1428 211 294 64 19 chr12 21323117 21323327 -122959162 - L3 LINE CR1 -187 1390 1117 233 214 36 0 chr12 21323855 21323911 -122958578 - HsTC2 DNA Tc2 -1812 86 29 205 294 0 0 chr12 21323924 21323975 -122958514 - L3 LINE CR1 -450 1127 1077 1829 187 6 8 chr12 21324273 21324631 -122957858 - L1MB3 LINE L1 -2 6181 5825 443 320 59 106 chr12 21325838 21326121 -122956368 - L2 LINE L2 -58 3214 2919 1208 106 5 25 chr12 21326121 21326320 -122956169 - MER107 DNA MER1_type 0 197 3 443 320 59 106 chr12 21326320 21326913 -122955576 - L2 LINE L2 -353 2919 2358 1957 100 3 60 chr12 21328204 21328548 -122953941 - AluSx SINE Alu 0 327 1 361 333 16 8 chr12 21328668 21328794 -122953695 + MIR SINE MIR 23 149 -113 218 171 0 0 chr12 21329214 21329249 -122953240 + (TG)n Simple_repeat Simple_repeat 2 36 0 260 150 0 0 chr12 21329288 21329328 -122953161 - L2 LINE L2 -7 3265 3226 255 123 48 34 chr12 21330060 21330206 -122952283 + (TA)n Simple_repeat Simple_repeat 2 149 0 209 182 73 0 chr12 21330212 21330267 -122952222 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 267 145 65 22 chr12 21330274 21330412 -122952077 + (TATAG)n Simple_repeat Simple_repeat 2 145 0 39 50 0 0 chr12 21330417 21330477 -122952012 + AT_rich Low_complexity Low_complexity 1 60 0 616 194 78 2 chr12 21330799 21330976 -122951513 - MLT1D LTR MaLR 0 505 286 226 79 26 0 chr12 21330982 21331020 -122951469 + L1MA9 LINE L1 6265 6303 -9 297 318 11 0 chr12 21331448 21331536 -122950953 + L2 LINE L2 3178 3266 -6 202 391 29 22 chr12 21332114 21332252 -122950237 - L2 LINE L2 -236 3036 2898 221 292 15 0 chr12 21332745 21332810 -122949679 - MIR SINE MIR 0 262 197 541 277 130 12 chr12 21334224 21334477 -122948012 + L2 LINE L2 3023 3305 -8 512 330 106 13 chr12 21334556 21334792 -122947697 - MIR SINE MIR 0 262 5 224 336 112 9 chr12 21335005 21335121 -122947368 - MIR3 SINE MIR -8 200 73 590 353 65 14 chr12 21335684 21336123 -122946366 - L2 LINE L2 -147 3166 2701 1272 203 49 36 chr12 21336138 21336593 -122945896 + MLT2B1 LTR ERVL 4 512 -8 882 132 0 0 chr12 21337043 21337179 -122945310 + L1PA10 LINE L1 6027 6162 -6 28738 144 19 61 chr12 21337295 21343742 -122938747 + L1PA16 LINE L1 1 6164 -2 24 32 0 0 chr12 21345282 21345313 -122937176 + AT_rich Low_complexity Low_complexity 1 31 0 1398 103 0 0 chr12 21346738 21346922 -122935567 - AluSg/x SINE Alu -18 294 111 1497 77 5 0 chr12 21347144 21347339 -122935150 - AluSg/x SINE Alu -6 306 111 2300 48 0 64 chr12 21347561 21347875 -122934614 - AluY SINE Alu -17 294 1 491 295 111 25 chr12 21348457 21348701 -122933788 - MLT1K LTR MaLR -2 586 322 239 174 22 0 chr12 21348765 21348811 -122933678 - MLT1K LTR MaLR -359 229 183 249 250 0 0 chr12 21349690 21349738 -122932751 + MIR SINE MIR 84 131 -77 525 268 117 11 chr12 21349866 21350045 -122932444 - MLT1I LTR MaLR -17 392 195 659 225 104 12 chr12 21350737 21350910 -122931579 + MER5A DNA MER1_type 1 189 0 324 48 0 0 chr12 21353453 21353495 -122928994 + (CA)n Simple_repeat Simple_repeat 1 42 0 2325 146 68 2 chr12 21353716 21354113 -122928376 - MSTA LTR MaLR 0 428 6 264 196 54 0 chr12 21354527 21354583 -122927906 + MER20B DNA MER1_type 723 781 -2 230 267 0 0 chr12 21355334 21355394 -122927095 + 5S rRNA rRNA 31 90 -31 1116 15 0 0 chr12 21356822 21356952 -122925537 + L1PA3 LINE L1 6026 6155 0 1689 140 67 0 chr12 21358195 21358482 -122924007 + MER7A DNA MER2_type 8 312 -34 316 137 0 0 chr12 21358474 21358525 -122923964 + MSTB2 LTR MaLR 407 457 0 * 1078 299 62 76 chr12 21358525 21358940 -122923549 - L2 LINE L2 -27 3286 2867 650 228 88 16 chr12 21358940 21359133 -122923356 - MER3 DNA MER1_type -1 208 2 1078 299 62 76 chr12 21359133 21359728 -122922761 - L2 LINE L2 -446 2867 2291 21 36 0 0 chr12 21360442 21360470 -122922019 + AT_rich Low_complexity Low_complexity 1 28 0 184 153 0 51 chr12 21362305 21362364 -122920125 + CT-rich Low_complexity Low_complexity 4 59 0 225 154 0 0 chr12 21363020 21363059 -122919430 + (CGTG)n Simple_repeat Simple_repeat 3 41 0 270 73 0 0 chr12 21364227 21364268 -122918221 + (T)n Simple_repeat Simple_repeat 1 41 0 28 29 0 0 chr12 21365654 21365689 -122916800 + AT_rich Low_complexity Low_complexity 1 35 0 2813 123 0 2 chr12 21417405 21417828 -122864661 - HERVH LTR ERV1 -2804 4909 4488 3236 100 4 4 chr12 21417830 21418319 -122864170 - HERVH LTR ERV1 -3720 3993 3505 860 136 27 0 chr12 21418323 21418470 -122864019 - HERVH LTR ERV1 -4423 3290 3140 * 14532 138 16 14 chr12 21418449 21421126 -122861363 - HERVH LTR ERV1 -4718 2995 1 3484 67 2 7 chr12 21421128 21421578 -122860911 - LTR7 LTR ERV1 -2 448 1 952 45 0 0 chr12 21421578 21421690 -122860799 - L1P LINE L1 -6030 116 5 2512 196 31 21 chr12 21421916 21422498 -122859991 - L1 LINE L1 -1975 4171 3584 2498 229 22 27 chr12 21422544 21423285 -122859204 - L1 LINE L1 -3128 3018 2282 2221 82 27 0 chr12 21423285 21423578 -122858911 - AluSc SINE Alu -8 301 1 725 227 0 27 chr12 21423595 21423745 -122858744 - FRAM SINE Alu -30 146 1 22 35 0 0 chr12 21424212 21424241 -122858248 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr12 21424250 21424280 -122858209 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 21424758 21424779 -122857710 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr12 21425304 21425339 -122857150 + AT_rich Low_complexity Low_complexity 1 35 0 352 277 121 40 chr12 21425594 21426080 -122856409 + L1 LINE L1 2759 3322 -2824 558 138 0 0 chr12 21426157 21426266 -122856223 + L1P LINE L1 5254 5362 -804 2288 71 0 0 chr12 21426269 21426569 -122855920 + AluY SINE Alu 1 300 0 236 264 28 47 chr12 21426733 21426839 -122855650 + L1 LINE L1 3589 3692 -2454 342 0 0 0 chr12 21427116 21427154 -122855335 + (T)n Simple_repeat Simple_repeat 1 38 0 967 219 0 5 chr12 21427793 21427989 -122854500 + HERVH LTR ERV1 4955 5149 -2564 * 1121 125 87 14 chr12 21427986 21428194 -122854295 + HERVH LTR ERV1 5597 5819 -1894 2489 87 45 13 chr12 21428194 21428572 -122853917 + HERVH LTR ERV1 7324 7713 0 3359 69 2 7 chr12 21428572 21429022 -122853467 + LTR7 LTR ERV1 1 448 -2 42213 45 3 2 chr12 21429024 21435066 -122847423 + L1PA3 LINE L1 112 6155 0 4308 184 55 37 chr12 21435060 21436190 -122846299 + L1 LINE L1 4156 5305 -841 * 1710 132 27 14 chr12 21436203 21436499 -122845990 - L1MA4A LINE L1 -335 5968 5669 6373 130 117 100 chr12 21436566 21438390 -122844099 - pTR5 LTR ERV1 0 8399 504 15560 25 2 0 chr12 21438490 21441096 -122841393 + L1PA3 LINE L1 3544 6153 -2 3188 170 63 5 chr12 21441116 21441781 -122840708 - L1 LINE L1 -1548 5300 4597 7628 186 54 39 chr12 21441803 21442831 -122839658 - L1 LINE L1 -2607 4241 3230 296 77 0 0 chr12 21442831 21442870 -122839619 + U2 snRNA snRNA 4 42 -146 7628 186 54 39 chr12 21442870 21443735 -122838754 - L1 LINE L1 -3618 3230 2379 2449 73 0 0 chr12 21443735 21444035 -122838454 - AluY SINE Alu -11 300 1 7628 186 54 39 chr12 21444035 21444690 -122837799 - L1 LINE L1 -4469 2379 1735 2196 101 0 0 chr12 21444690 21444976 -122837513 - AluY SINE Alu -6 305 20 7628 186 54 39 chr12 21444976 21445678 -122836811 - L1 LINE L1 -5113 1735 2 2352 88 0 3 chr12 21446479 21446784 -122835705 - AluY SINE Alu -7 304 1 293 70 42 28 chr12 21447089 21447160 -122835329 + (TATAA)n Simple_repeat Simple_repeat 1 72 0 21 0 0 0 chr12 21447244 21447265 -122835224 + AT_rich Low_complexity Low_complexity 1 21 0 396 0 0 0 chr12 21448063 21448107 -122834382 + (TG)n Simple_repeat Simple_repeat 1 44 0 182 62 31 0 chr12 21448956 21448988 -122833501 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 32 91 0 0 chr12 21451261 21451349 -122831140 + AT_rich Low_complexity Low_complexity 1 88 0 2266 105 13 0 chr12 21452367 21452672 -122829817 + AluSp SINE Alu 1 309 -4 24 32 0 0 chr12 21453198 21453229 -122829260 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chr12 21455151 21455173 -122827316 + (A)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr12 21456029 21456051 -122826438 + (A)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr12 21456491 21456513 -122825976 + AT_rich Low_complexity Low_complexity 1 22 0 32 67 0 0 chr12 21456570 21456630 -122825859 + AT_rich Low_complexity Low_complexity 1 60 0 279 0 0 0 chr12 21457279 21457310 -122825179 + (CA)n Simple_repeat Simple_repeat 1 31 0 953 35 0 0 chr12 21457856 21457972 -122824517 - L1PA4 LINE L1 -14 6141 6026 362 343 43 39 chr12 21458007 21458287 -122824202 + ERVL LTR ERVL 5043 5323 -441 335 209 55 18 chr12 21458418 21458528 -122823961 - L1MC5 LINE L1 -48 7913 7800 212 290 10 0 chr12 21458549 21458649 -122823840 + (TA)n Simple_repeat Simple_repeat 2 102 0 1063 209 36 111 chr12 21458680 21459267 -122823222 - L1MC5 LINE L1 -247 7714 7172 1463 141 12 8 chr12 21459271 21459519 -122822970 + L1PA16 LINE L1 5911 6159 -7 801 228 111 96 chr12 21460028 21460638 -122821851 - L1MC5 LINE L1 -785 7176 6618 1168 305 114 0 chr12 21460730 21461117 -122821372 - L2 LINE L2 -1093 2221 1791 762 331 141 14 chr12 21461118 21461614 -122820875 - L2 LINE L2 -1766 1548 990 1569 233 70 12 chr12 21461619 21462048 -122820441 + MLT1C LTR MaLR 6 459 -8 604 248 23 8 chr12 21462050 21462183 -122820306 + MER58B DNA MER1_type 205 339 -2 22 0 0 0 chr12 21462712 21462734 -122819755 + AT_rich Low_complexity Low_complexity 1 22 0 236 324 3 83 chr12 21462760 21462917 -122819572 - MIR SINE MIR -52 210 66 185 62 0 31 chr12 21463295 21463327 -122819162 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 301 330 92 12 chr12 21464079 21464252 -122818237 + MIR SINE MIR 15 201 -61 311 167 0 0 chr12 21465525 21465579 -122816910 - MER103 DNA DNA -94 72 19 480 297 151 25 chr12 21465642 21465999 -122816490 - L1 LINE L1 -2111 4035 3634 229 213 71 85 chr12 21466480 21466621 -122815868 - HAL1 LINE L1 -79 2428 2290 21 0 0 0 chr12 21467600 21467621 -122814868 + AT_rich Low_complexity Low_complexity 1 21 0 230 317 50 0 chr12 21468062 21468122 -122814367 - L2 LINE L2 -12 3301 3239 1299 203 88 21 chr12 21468215 21468555 -122813934 - L1M2 LINE L1 -678 5634 5272 1235 51 6 0 chr12 21468566 21468724 -122813765 - L1PA5 LINE L1 -3 6151 5993 358 213 0 0 chr12 21470634 21470695 -122811794 - MER5A DNA MER1_type -118 71 11 22 0 0 0 chr12 21470965 21470987 -122811502 + AT_rich Low_complexity Low_complexity 1 22 0 601 320 54 24 chr12 21471383 21472062 -122810427 - L1M2 LINE L1 -1832 4314 3596 318 26 0 0 chr12 21472062 21472101 -122810388 + (TG)n Simple_repeat Simple_repeat 1 39 0 185 62 0 31 chr12 21472338 21472370 -122810119 + (TA)n Simple_repeat Simple_repeat 1 31 0 413 326 27 7 chr12 21473039 21473186 -122809303 + MER5A DNA MER1_type 1 150 -39 194 270 32 16 chr12 21475065 21475128 -122807361 - MIR3 SINE MIR -2 206 143 474 293 8 8 chr12 21475620 21475753 -122806736 + MIR SINE MIR 81 213 -49 221 260 16 134 chr12 21476055 21476182 -122806307 - L2 LINE L2 -18 3295 3184 1031 307 57 18 chr12 21476446 21476883 -122805606 - L2 LINE L2 -48 3265 2812 246 252 402 0 chr12 21476897 21477024 -122805465 - MER5A DNA MER1_type -3 186 9 759 230 28 6 chr12 21477033 21477211 -122805278 - L2 LINE L2 -517 2797 2616 22 35 0 0 chr12 21477634 21477663 -122804826 + AT_rich Low_complexity Low_complexity 1 29 0 2874 9 0 0 chr12 21477713 21478031 -122804458 + AluYb8 SINE Alu 1 318 0 1272 34 0 0 chr12 21478309 21478458 -122804031 - AluY SINE Alu 0 311 163 1386 107 70 5 chr12 21479085 21479300 -122803189 + MER30 DNA MER1_type 1 229 -1 2702 10 0 0 chr12 21481192 21481492 -122800997 - AluY SINE Alu -11 300 1 970 188 61 0 chr12 21481795 21481992 -122800497 + MER3 DNA MER1_type 1 209 0 293 351 9 0 chr12 21482332 21482446 -122800043 + MIR SINE MIR 145 259 -3 22 0 0 0 chr12 21485467 21485489 -122797000 + AT_rich Low_complexity Low_complexity 1 22 0 393 22 0 0 chr12 21485759 21485805 -122796684 + (T)n Simple_repeat Simple_repeat 1 46 0 251 250 118 96 chr12 21486818 21486954 -122795535 - L2 LINE L2 0 3313 3175 13579 173 19 26 chr12 21487695 21487879 -122794610 + Tigger1 DNA MER2_type 1 185 -2233 303 28 0 0 chr12 21487879 21487915 -122794574 + (TTA)n Simple_repeat Simple_repeat 1 36 0 13579 173 19 26 chr12 21487915 21489533 -122792956 + Tigger1 DNA MER2_type 185 1784 -634 2488 62 3 0 chr12 21489533 21489837 -122792652 + AluSp SINE Alu 1 305 -8 13579 173 19 26 chr12 21489837 21490468 -122792021 + Tigger1 DNA MER2_type 1784 2418 0 231 192 55 55 chr12 21493137 21493210 -122789279 - L1ME2 LINE L1 -9 6155 6083 369 0 0 0 chr12 21493229 21493270 -122789219 + (TA)n Simple_repeat Simple_repeat 2 42 0 234 0 0 0 chr12 21493270 21493296 -122789193 + (TG)n Simple_repeat Simple_repeat 2 27 0 1074 277 52 6 chr12 21493301 21493664 -122788825 - L1ME3 LINE L1 -93 6069 5693 38 68 0 0 chr12 21493664 21493737 -122788752 + AT_rich Low_complexity Low_complexity 1 73 0 340 161 83 12 chr12 21493751 21493919 -122788570 + (TA)n Simple_repeat Simple_repeat 1 180 0 313 161 77 19 chr12 21493843 21493998 -122788491 + (TTATA)n Simple_repeat Simple_repeat 1 164 0 * 38 75 0 0 chr12 21494002 21494082 -122788407 + AT_rich Low_complexity Low_complexity 1 80 0 247 179 24 32 chr12 21494086 21494209 -122788280 + (TATAA)n Simple_repeat Simple_repeat 3 124 0 214 198 62 10 chr12 21494221 21494317 -122788172 + (TTATA)n Simple_repeat Simple_repeat 3 103 0 35 41 0 0 chr12 21494431 21494480 -122788009 + AT_rich Low_complexity Low_complexity 1 49 0 776 275 27 9 chr12 21494486 21494708 -122787781 - L1ME3 LINE L1 -526 5636 5411 239 302 121 13 chr12 21494878 21495027 -122787462 + MIR SINE MIR 92 256 -6 22 0 0 0 chr12 21495498 21495520 -122786969 + AT_rich Low_complexity Low_complexity 1 22 0 5373 168 14 17 chr12 21495520 21496315 -122786174 - L1PA16 LINE L1 -7 6159 5359 2380 46 0 0 chr12 21496315 21496626 -122785863 - AluY SINE Alu 0 311 1 5373 168 14 17 chr12 21496626 21497160 -122785329 - L1PA16 LINE L1 -807 5359 4825 26 64 0 0 chr12 21497674 21497721 -122784768 + AT_rich Low_complexity Low_complexity 1 47 0 1487 231 40 23 chr12 21499635 21500103 -122782386 - LTR22 LTR ERVK -4 454 1 596 274 14 14 chr12 21500750 21500896 -122781593 - MIR SINE MIR -105 157 12 476 270 170 35 chr12 21501027 21501257 -122781232 + MIR SINE MIR 2 262 0 264 283 85 19 chr12 21502267 21502373 -122780116 + MIR SINE MIR 118 230 -32 430 318 74 5 chr12 21503560 21503749 -122778740 - MARNA DNA Mariner -43 543 342 247 286 39 0 chr12 21503761 21503838 -122778651 - MARNA DNA Mariner -474 112 33 476 282 18 31 chr12 21504124 21504287 -122778202 + MIR3 SINE MIR 38 198 -10 272 359 33 0 chr12 21504675 21504767 -122777722 - L2 LINE L2 -30 3242 3148 227 343 127 12 chr12 21506282 21506448 -122776041 - MIR3 SINE MIR 0 208 24 1704 177 30 35 chr12 21506674 21507041 -122775448 - MLT1A1 LTR MaLR 0 365 1 221 250 0 0 chr12 21507419 21507467 -122775022 + T-rich Low_complexity Low_complexity 1 48 0 274 349 53 8 chr12 21507581 21507713 -122774776 - MIR SINE MIR -72 190 53 595 328 61 77 chr12 21507986 21508752 -122773737 - L2 LINE L2 -3 3310 2543 282 29 0 0 chr12 21509601 21509636 -122772853 + (TA)n Simple_repeat Simple_repeat 2 36 0 1981 157 24 8 chr12 21509732 21510101 -122772388 - THE1C LTR MaLR 0 375 1 1471 238 64 31 chr12 21510102 21510771 -122771718 - Charlie2 DNA MER1_type -4 2858 2168 195 42 0 0 chr12 21511343 21511367 -122771122 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2080 64 18 25 chr12 21511370 21511652 -122770837 - AluY SINE Alu -31 280 1 211 241 0 17 chr12 21512309 21512367 -122770122 + CT-rich Low_complexity Low_complexity 3 59 0 531 281 45 9 chr12 21512522 21512743 -122769746 + Charlie2a DNA MER1_type 611 839 -2023 29 28 0 0 chr12 21512780 21512816 -122769673 + AT_rich Low_complexity Low_complexity 1 36 0 1739 265 107 73 chr12 21513254 21514360 -122768129 + L1MC5 LINE L1 5254 6321 -1640 2309 109 0 0 chr12 21514360 21514671 -122767818 + AluSx SINE Alu 1 311 -1 1739 265 107 73 chr12 21514671 21515960 -122766529 + L1MC5 LINE L1 6321 7793 -168 1921 136 0 14 chr12 21515960 21516255 -122766234 + AluSx SINE Alu 1 291 -21 1739 265 107 73 chr12 21516255 21516383 -122766106 + L1MC5 LINE L1 7793 7915 -46 786 271 70 24 chr12 21516671 21517054 -122765435 - L1MC5 LINE L1 -86 7875 7475 1777 257 78 47 chr12 21517056 21517882 -122764607 - L1MC4 LINE L1 -2 8040 7190 386 281 111 28 chr12 21518095 21518340 -122764149 - Charlie8 DNA MER1_type -1010 1407 71 191 361 14 0 chr12 21518520 21518592 -122763897 - L2 LINE L2 -61 3211 3139 519 310 110 58 chr12 21518985 21519430 -122763059 - L2 LINE L2 -685 2629 2162 602 208 23 15 chr12 21520733 21520863 -122761626 + MER94 DNA DNA 1 131 -3 28 0 0 0 chr12 21521550 21521578 -122760911 + AT_rich Low_complexity Low_complexity 1 28 0 2427 73 0 0 chr12 21522366 21522666 -122759823 - AluY SINE Alu -11 300 1 229 222 185 0 chr12 21523127 21523208 -122759281 - MIR SINE MIR -115 147 52 392 210 81 66 chr12 21523656 21523767 -122758722 - FLAM_A SINE Alu -28 105 5 355 308 75 47 chr12 21525080 21525309 -122757180 - MIR SINE MIR -6 256 17 624 179 77 8 chr12 21525596 21525713 -122756776 - FLAM_A SINE Alu -8 125 1 344 252 29 0 chr12 21525723 21525826 -122756663 - HAL1 LINE L1 -144 2363 2258 300 267 22 67 chr12 21525916 21526051 -122756438 - HAL1b LINE L1 -471 877 749 342 0 0 0 chr12 21526149 21526187 -122756302 + (A)n Simple_repeat Simple_repeat 1 38 0 180 0 0 0 chr12 21526735 21526755 -122755734 + (TTGG)n Simple_repeat Simple_repeat 4 23 0 470 199 54 5 chr12 21526755 21526941 -122755548 - AluY SINE Alu -31 280 86 451 270 72 65 chr12 21527386 21527844 -122754645 + L1MCa LINE L1 103 788 -5634 835 237 77 11 chr12 21528222 21528509 -122753980 + L1MCa LINE L1 1129 1434 -4989 6956 215 34 10 chr12 21529007 21531711 -122750778 + L1PA16 LINE L1 3404 6165 -1 9160 223 52 12 chr12 21531725 21534756 -122747733 + L1MA5A LINE L1 2627 5785 -512 694 71 36 0 chr12 21534756 21534868 -122747621 + (GAAA)n Simple_repeat Simple_repeat 1 116 0 5664 39 4 0 chr12 21534869 21535566 -122746923 - L1PA5 LINE L1 -1630 4516 3817 7287 37 8 1 chr12 21535566 21537185 -122745304 + L1PA5 LINE L1 4521 6145 -9 230 81 27 0 chr12 21537198 21537235 -122745254 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 1488 164 8 4 chr12 21537259 21537521 -122744968 + L1MA5A LINE L1 5797 6059 -238 7230 221 32 26 chr12 21537531 21538827 -122743662 + L1MA6 LINE L1 2116 3430 -2716 877 142 13 7 chr12 21538827 21538982 -122743507 + L1PB2 LINE L1 5990 6145 -6 7230 221 32 26 chr12 21538982 21539690 -122742799 + L1MA6 LINE L1 3430 4132 -2014 4812 173 43 27 chr12 21539688 21541305 -122741184 + L1MA6 LINE L1 4659 6285 -15 * 31 44 0 0 chr12 21541445 21541490 -122740999 + AT_rich Low_complexity Low_complexity 1 45 0 233 303 0 0 chr12 21541511 21541587 -122740902 + L1MC4 LINE L1 6621 6696 -1346 272 214 14 14 chr12 21541593 21541663 -122740826 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 183 338 95 0 chr12 21541764 21541838 -122740651 + MER5B DNA MER1_type 24 104 -74 231 36 0 0 chr12 21542358 21542386 -122740103 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 22 35 0 0 chr12 21542651 21542680 -122739809 + AT_rich Low_complexity Low_complexity 1 29 0 4625 206 56 6 chr12 21543585 21544673 -122737816 + L1MCa LINE L1 531 1673 -4753 39370 41 1 1 chr12 21544679 21549496 -122732993 + L1P LINE L1 2 4815 -1331 1043 182 11 0 chr12 21549496 21549678 -122732811 + L1MC1 LINE L1 6142 6330 -3 656 216 95 79 chr12 21549912 21549979 -122732510 - MLT1D LTR MaLR -82 423 359 2025 147 0 3 chr12 21549979 21550292 -122732197 - AluSx SINE Alu 0 312 1 656 216 95 79 chr12 21550292 21550465 -122732024 - MLT1D LTR MaLR -146 359 179 302 0 26 0 chr12 21550496 21550534 -122731955 + (CA)n Simple_repeat Simple_repeat 2 40 0 2335 81 0 0 chr12 21550768 21551063 -122731426 + AluY SINE Alu 1 295 -16 218 392 31 0 chr12 21551213 21551310 -122731179 + L3 LINE CR1 1422 1521 -56 306 300 62 24 chr12 21551372 21551582 -122730907 - L1MC4a LINE L1 -1870 5938 5721 2559 296 77 27 chr12 21551813 21552309 -122730180 - L1MC2 LINE L1 -22 6322 5769 1592 158 169 21 chr12 21552309 21552682 -122729807 + MSTA LTR MaLR 1 428 0 2559 296 77 27 chr12 21552682 21552989 -122729500 - L1MC2 LINE L1 -575 5769 5479 22 0 0 0 chr12 21553108 21553130 -122729359 + AT_rich Low_complexity Low_complexity 1 22 0 1730 134 21 3 chr12 21553146 21553436 -122729053 - L1PA15 LINE L1 -2 6163 5869 1761 153 0 0 chr12 21553436 21553718 -122728771 + L1P4 LINE L1 5395 5676 -489 2441 129 11 5 chr12 21553762 21554135 -122728354 + THE1C LTR MaLR 1 375 0 9269 129 40 37 chr12 21554135 21555711 -122726778 + THE1C-int LTR MaLR 1 1580 0 2658 111 0 5 chr12 21555711 21556088 -122726401 + THE1C LTR MaLR 1 375 0 372 370 60 5 chr12 21556430 21556630 -122725859 + MIR SINE MIR 52 262 0 21 36 0 0 chr12 21556684 21556712 -122725777 + AT_rich Low_complexity Low_complexity 1 28 0 992 176 5 5 chr12 21559023 21559210 -122723279 + L1PB1 LINE L1 7 193 -6670 * 13681 193 45 19 chr12 21559197 21561170 -122721319 + L1PB1 LINE L1 620 2541 -4326 279 0 0 0 chr12 21561170 21561201 -122721288 + (CA)n Simple_repeat Simple_repeat 2 32 0 13681 193 45 19 chr12 21561201 21565243 -122717246 + L1PB1 LINE L1 2541 6867 0 21 36 0 0 chr12 21566152 21566180 -122716309 + AT_rich Low_complexity Low_complexity 1 28 0 227 188 83 0 chr12 21566793 21566841 -122715648 - L2 LINE L2 -6 3266 3215 349 248 80 66 chr12 21566872 21567009 -122715480 + MIR SINE MIR 68 206 -56 239 325 9 9 chr12 21567670 21567784 -122714705 + (CA)n Simple_repeat Simple_repeat 2 115 0 2206 321 126 25 chr12 21567841 21568032 -122714457 + L2 LINE L2 107 277 -3037 2125 122 0 7 chr12 21568032 21568328 -122714161 - AluSx SINE Alu -18 294 1 2206 321 126 25 chr12 21568328 21569727 -122712762 + L2 LINE L2 277 1857 -1457 455 235 74 7 chr12 21569744 21569938 -122712551 + L1PB4 LINE L1 907 1114 -5090 1202 81 0 0 chr12 21569956 21570105 -122712384 + AluSc SINE Alu 149 297 -12 10278 220 42 41 chr12 21570184 21574646 -122707843 + L1PB4 LINE L1 1253 5718 -495 1875 166 0 6 chr12 21574646 21574772 -122707717 + AluSq SINE Alu 1 126 -187 642 104 0 0 chr12 21574772 21574868 -122707621 + (CATAA)n Simple_repeat Simple_repeat 2 97 0 1875 166 0 6 chr12 21574868 21575055 -122707434 + AluSq SINE Alu 126 312 -1 10278 220 42 41 chr12 21575055 21575549 -122706940 + L1PB4 LINE L1 5718 6210 -3 1803 330 112 44 chr12 21575603 21576958 -122705531 + L2 LINE L2 1883 3313 0 415 323 100 35 chr12 21577641 21578134 -122704355 + L2 LINE L2 2785 3312 -1 22 56 0 0 chr12 21579032 21579068 -122703421 + AT_rich Low_complexity Low_complexity 1 36 0 349 295 0 33 chr12 21581222 21581344 -122701145 + GA-rich Low_complexity Low_complexity 4 121 0 224 356 9 17 chr12 21581547 21581662 -122700827 + MIR3 SINE MIR 89 202 -6 22 0 0 0 chr12 21582044 21582066 -122700423 + AT_rich Low_complexity Low_complexity 1 22 0 1457 217 102 3 chr12 21582129 21582461 -122700028 + MLT1A1 LTR MaLR 1 365 0 352 205 71 31 chr12 21582592 21582719 -122699770 - Charlie1 DNA MER1_type -3 2758 2627 723 277 33 0 chr12 21582719 21582903 -122699586 - Charlie1 DNA MER1_type -2544 217 28 269 308 75 42 chr12 21583245 21583365 -122699124 + MIR3 SINE MIR 79 202 -6 192 405 40 7 chr12 21583826 21583974 -122698515 + L3b LINE CR1 1300 1452 -131 247 366 113 14 chr12 21584012 21584154 -122698335 + MIR SINE MIR 12 167 -95 387 184 0 0 chr12 21584605 21584611 -122697878 + (TA)n Simple_repeat Simple_repeat 2 7 -108 369 0 0 0 chr12 21584611 21584652 -122697837 + (CA)n Simple_repeat Simple_repeat 2 42 0 387 184 0 0 chr12 21584652 21584759 -122697730 + (TA)n Simple_repeat Simple_repeat 6 115 0 248 269 54 30 chr12 21586370 21586537 -122695952 - L1ME4a LINE L1 -115 6006 5836 1292 246 0 4 chr12 21586648 21587034 -122695455 + AluJb SINE Alu 5 389 0 42 36 0 0 chr12 21587060 21587116 -122695373 + AT_rich Low_complexity Low_complexity 1 56 0 521 315 122 13 chr12 21587889 21588127 -122694362 - L3 LINE CR1 -35 1542 1279 603 123 69 100 chr12 21588445 21588575 -122693914 + MER63 DNA MER1_type 1 752 -84 68 24 0 0 chr12 21589056 21589138 -122693351 + AT_rich Low_complexity Low_complexity 1 82 0 732 283 11 38 chr12 21590062 21590327 -122692162 + HsTC2b DNA Tc2 4 261 -654 6453 183 30 29 chr12 21590328 21593672 -122688817 + L1MA1 LINE L1 1699 7721 0 13467 184 25 27 chr12 21593688 21594550 -122687939 + L1MA2 LINE L1 2268 3130 -4593 1941 150 23 0 chr12 21594550 21594856 -122687633 - AluSq SINE Alu 0 313 1 13467 184 25 27 chr12 21594856 21596605 -122685884 + L1MA2 LINE L1 3130 4881 -2842 366 94 0 0 chr12 21596605 21596658 -122685831 + MADE1 DNA Mariner 1 53 -27 13467 184 25 27 chr12 21596658 21599302 -122683187 + L1MA2 LINE L1 4881 7723 0 23 0 0 0 chr12 21599302 21599325 -122683164 + AT_rich Low_complexity Low_complexity 1 23 0 8707 212 53 58 chr12 21599350 21600329 -122682160 + L1MB1 LINE L1 2908 3891 -3696 545 215 0 0 chr12 21600329 21600422 -122682067 + MER2 DNA MER2_type 1 93 -252 8707 212 53 58 chr12 21600422 21602205 -122680284 + L1MB1 LINE L1 3891 5682 -1905 390 42 0 0 chr12 21602205 21602253 -122680236 + (CA)n Simple_repeat Simple_repeat 1 48 0 8707 212 53 58 chr12 21602253 21604053 -122678436 + L1MB1 LINE L1 5682 7528 -59 13746 159 27 62 chr12 21604053 21605915 -122676574 - Tigger2 DNA MER2_type 0 2718 984 2982 105 11 0 chr12 21605915 21606353 -122676136 - L1PA10 LINE L1 -2 6166 5724 13746 159 27 62 chr12 21606353 21607304 -122675185 - Tigger2 DNA MER2_type -1734 984 2 317 167 0 0 chr12 21607305 21607365 -122675124 + L1MB1 LINE L1 7527 7586 -1 391 306 101 21 chr12 21610752 21611079 -122671410 - L1ME4a LINE L1 -246 5875 5523 22 0 0 0 chr12 21611130 21611152 -122671337 + AT_rich Low_complexity Low_complexity 1 22 0 531 292 125 19 chr12 21611342 21611558 -122670931 + MER8 DNA MER2_type 1 239 0 260 376 62 6 chr12 21612566 21612728 -122669761 - L2 LINE L2 -212 3060 2890 448 325 51 5 chr12 21613077 21613274 -122669215 + MLT1J LTR MaLR 6 211 -300 190 389 67 0 chr12 21614571 21614661 -122667828 - L2 LINE L2 -224 3048 2953 524 334 83 55 chr12 21614696 21615150 -122667339 + HAL1 LINE L1 830 1269 -1238 1929 122 3 47 chr12 21615150 21615469 -122667020 + AluSq SINE Alu 1 305 -8 1925 48 48 37 chr12 21615471 21615740 -122666749 + AluY SINE Alu 39 310 -1 524 334 83 55 chr12 21615740 21615869 -122666620 + HAL1 LINE L1 1269 1433 -1074 348 323 13 7 chr12 21615887 21616042 -122666447 + HAL1 LINE L1 1486 1641 -866 1043 225 81 63 chr12 21616087 21616421 -122666068 + MER2 DNA MER2_type 1 340 -5 1019 201 9 27 chr12 21617223 21617442 -122665047 - MER20 DNA MER1_type -1 218 4 2540 101 13 0 chr12 21617837 21618215 -122664274 - L1PB2 LINE L1 0 6151 5769 5958 90 16 0 chr12 21618235 21619068 -122663421 - L1PA8A LINE L1 -1 6130 5285 261 103 0 0 chr12 21619064 21619103 -122663386 + L1PA8A LINE L1 5224 5262 -884 * 1111 214 97 27 chr12 21619562 21619861 -122662628 + MLT1A1 LTR MaLR 16 335 -30 546 306 90 39 chr12 21619880 21620135 -122662354 + L2 LINE L2 2548 2815 -499 305 232 0 120 chr12 21620240 21620365 -122662124 + L1P LINE L1 3341 3450 -2696 2203 99 7 0 chr12 21620369 21620663 -122661826 - AluSg SINE Alu -14 296 1 1047 253 44 34 chr12 21620674 21621085 -122661404 + L1PA15 LINE L1 3220 3634 -2512 3314 205 12 3 chr12 21621095 21621762 -122660727 + L1PA15 LINE L1 5491 6163 -2 244 288 53 11 chr12 21621797 21621926 -122660563 + L1M4 LINE L1 349 546 -5757 2195 88 0 25 chr12 21622284 21622604 -122659885 - AluSx SINE Alu 0 312 1 1564 271 57 43 chr12 21622701 21623511 -122658978 + L1M4 LINE L1 804 1714 -4589 2482 45 10 19 chr12 21623511 21623824 -122658665 + AluY SINE Alu 2 311 0 1564 271 57 43 chr12 21623824 21623900 -122658589 + L1M4 LINE L1 1714 1787 -4516 810 215 33 9 chr12 21624018 21624232 -122658257 - L1M4c LINE L1 -5066 1318 1100 852 253 18 14 chr12 21624236 21624457 -122658032 - MLT1A1 LTR MaLR 0 365 144 24546 98 7 3 chr12 21624457 21628804 -122653685 - L1PA7 LINE L1 -4 6150 1784 210 162 0 0 chr12 21629177 21629214 -122653275 + T-rich Low_complexity Low_complexity 4 40 0 11748 229 28 33 chr12 21629798 21632346 -122650143 + L1PB3 LINE L1 3 2561 -4309 2094 119 14 0 chr12 21632346 21632639 -122649850 + AluSc SINE Alu 1 297 -12 11748 229 28 33 chr12 21632639 21634708 -122647781 + L1PB3 LINE L1 2561 4638 -2232 1583 197 0 25 chr12 21634708 21635028 -122647461 + AluSx SINE Alu 1 312 0 11748 229 28 33 chr12 21635028 21638175 -122644314 + L1PB3 LINE L1 4638 6863 -7 406 328 136 18 chr12 21639080 21639470 -122643019 + HAL1 LINE L1 1226 1661 -846 1002 216 70 63 chr12 21639743 21640030 -122642459 - MLT1A1 LTR MaLR 0 365 77 487 274 37 55 chr12 21640537 21640754 -122641735 + L1M4 LINE L1 2775 2986 -3396 1285 171 0 5 chr12 21640754 21640976 -122641513 + L1PA15 LINE L1 5944 6164 -1 487 274 37 55 chr12 21640976 21641086 -122641403 + L1M4 LINE L1 2986 3096 -3286 23 33 0 0 chr12 21641114 21641144 -122641345 + AT_rich Low_complexity Low_complexity 1 30 0 5766 204 100 75 chr12 21641187 21643160 -122639329 + L1MCa LINE L1 1 2023 -4403 1412 193 100 0 chr12 21643220 21643489 -122639000 - AluSx SINE Alu -8 304 9 933 170 57 5 chr12 21643502 21643696 -122638793 + L1MCa LINE L1 2120 2323 -4103 13045 169 48 35 chr12 21643814 21644298 -122638191 + MER4C-int LTR ERV1 3341 3817 -2781 216 97 0 0 chr12 21644298 21644329 -122638160 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 13045 169 48 35 chr12 21644329 21646894 -122635595 + MER4C-int LTR ERV1 3817 6429 -169 2597 127 69 5 chr12 21646941 21647373 -122635116 + MER4C LTR ERV1 5 464 -1 27 29 0 0 chr12 21648404 21648438 -122634051 + AT_rich Low_complexity Low_complexity 1 34 0 217 263 40 50 chr12 21648473 21648572 -122633917 - L2 LINE L2 -2 3270 3173 22 56 0 0 chr12 21649020 21649056 -122633433 + AT_rich Low_complexity Low_complexity 1 36 0 312 326 76 15 chr12 21649095 21649227 -122633262 - L1MC/D LINE L1 -1958 5850 5711 17042 142 29 35 chr12 21649230 21650054 -122632435 - L1PA10 LINE L1 -1 6883 6055 2089 84 27 43 chr12 21650054 21650353 -122632136 - AluY SINE Alu -17 294 1 17042 142 29 35 chr12 21650353 21653699 -122628790 - L1PA10 LINE L1 -829 6055 2730 26 64 0 0 chr12 21653800 21653847 -122628642 + AT_rich Low_complexity Low_complexity 1 47 0 29356 106 12 8 chr12 21653847 21659204 -122623285 - L1PA7 LINE L1 -6 6463 1042 14666 145 4 10 chr12 21659206 21661462 -122621027 + HUERS-P3 LTR ERV1 1956 4197 -4722 * 16409 156 8 8 chr12 21661435 21664036 -122618453 + HUERS-P3 LTR ERV1 4311 6912 -2007 1162 206 20 10 chr12 21664255 21664519 -122617970 + HUERS-P3 LTR ERV1 7156 8915 -4 1239 264 56 72 chr12 21664520 21665142 -122617347 + LTR9 LTR ERV1 1 612 0 2193 162 8 5 chr12 21665239 21665911 -122616578 - L1PA10 LINE L1 -5193 1670 850 1964 172 101 35 chr12 21666239 21666693 -122615796 + LTR2B LTR ERV1 7 490 0 36590 117 54 55 chr12 21666693 21673597 -122608892 + Harlequin LTR ERV1 1 6896 0 736 72 0 0 chr12 21673601 21673698 -122608791 - AluYb8 SINE Alu -187 131 35 3581 135 5 27 chr12 21673717 21674241 -122608248 + L1MA4 LINE L1 2884 3530 -4035 2335 92 0 20 chr12 21674241 21674547 -122607942 + AluSg SINE Alu 1 300 -10 3581 135 5 27 chr12 21674547 21674762 -122607727 + L1MA4 LINE L1 3530 3748 -3817 * 9828 195 39 15 chr12 21674740 21678357 -122604132 + L1MA4 LINE L1 4005 7713 -6 1846 146 75 22 chr12 21678920 21679242 -122603247 + MER1B DNA MER1_type 1 339 0 261 247 37 12 chr12 21679473 21679554 -122602935 - L2 LINE L2 -903 2411 2329 228 304 104 9 chr12 21679569 21679684 -122602805 - L2 LINE L2 -2621 693 568 305 264 161 42 chr12 21679904 21680097 -122602392 + MLT1L LTR MaLR 221 436 -179 1714 63 0 0 chr12 21680150 21680451 -122602038 + L1PA5 LINE L1 5934 6234 0 512 211 0 0 chr12 21680506 21680601 -122601888 - FRAM SINE Alu -17 159 65 481 264 90 57 chr12 21680882 21681349 -122601140 + L1MCa LINE L1 19 795 -5627 621 271 81 7 chr12 21681713 21682008 -122600481 + L1MCa LINE L1 1120 1436 -4987 7349 214 19 18 chr12 21682499 21685266 -122597223 + L1PA16 LINE L1 3403 6165 -1 * 9676 210 32 27 chr12 21685253 21690015 -122592474 + L1MA5A LINE L1 3462 6766 -950 818 130 25 56 chr12 21690015 21690177 -122592312 + L1PB2 LINE L1 5993 6149 -2 9676 210 32 27 chr12 21690177 21690885 -122591604 + L1MA5A LINE L1 6766 7469 -247 5311 171 27 18 chr12 21690876 21692497 -122589992 + L1MA6 LINE L1 4654 6285 -15 * 261 83 0 0 chr12 21692652 21692688 -122589801 + (CA)n Simple_repeat Simple_repeat 2 37 0 27 29 0 0 chr12 21692876 21692910 -122589579 + AT_rich Low_complexity Low_complexity 1 34 0 3871 205 55 31 chr12 21692997 21693993 -122588496 + LTR28 LTR ERV1 1 1020 0 29 0 0 0 chr12 21694368 21694397 -122588092 + AT_rich Low_complexity Low_complexity 1 29 0 8609 226 71 19 chr12 21695319 21697026 -122585463 + L1MCa LINE L1 574 2191 -4235 1501 178 10 50 chr12 21697026 21697324 -122585165 + AluJb SINE Alu 1 286 -26 8609 226 71 19 chr12 21697324 21697680 -122584809 + L1MCa LINE L1 2191 2527 -3899 516 200 118 41 chr12 21697680 21697875 -122584614 - MER6B DNA MER2_type 0 210 1 8609 226 71 19 chr12 21697875 21698113 -122584376 + L1MCa LINE L1 2527 2751 -3675 1209 155 12 139 chr12 21698113 21698268 -122584221 + AluY SINE Alu 1 88 -253 2188 118 0 7 chr12 21698268 21698574 -122583915 + AluSc SINE Alu 1 304 -5 1209 155 12 139 chr12 21698574 21698800 -122583689 + AluY SINE Alu 88 341 0 8609 226 71 19 chr12 21698800 21701130 -122581359 + L1MCa LINE L1 2751 5448 -978 356 222 9 28 chr12 21701147 21701255 -122581234 + L1MC1 LINE L1 4081 4186 -2240 507 210 0 0 chr12 21701255 21701355 -122581134 + FRAM SINE Alu 41 140 -36 180 0 0 0 chr12 21701360 21701380 -122581109 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 5239 191 25 36 chr12 21701380 21701619 -122580870 + L1MC1 LINE L1 5441 5681 -932 2403 74 0 26 chr12 21701619 21701930 -122580559 + AluY SINE Alu 3 305 -6 5239 191 25 36 chr12 21701930 21702884 -122579605 + L1MC1 LINE L1 5681 6612 -1 25 31 0 0 chr12 21702936 21702968 -122579521 + AT_rich Low_complexity Low_complexity 1 32 0 23 54 0 0 chr12 21703191 21703228 -122579261 + AT_rich Low_complexity Low_complexity 1 37 0 1983 121 7 7 chr12 21703281 21703578 -122578911 + AluSx SINE Alu 1 297 -15 450 133 41 10 chr12 21703578 21703676 -122578813 + GA-rich Low_complexity Low_complexity 2 102 0 182 362 135 0 chr12 21703677 21703862 -122578627 + L3 LINE CR1 1312 1521 -56 275 279 13 97 chr12 21703935 21704161 -122578328 - L1MC4a LINE L1 -1881 5927 5721 253 200 0 0 chr12 21704170 21704215 -122578274 - L1MC4a LINE L1 -2151 5657 5613 2030 206 71 14 chr12 21704444 21704926 -122577563 - L1MC3 LINE L1 -14 7771 5810 1008 198 198 4 chr12 21704928 21705171 -122577318 + MSTA LTR MaLR 1 290 -138 8621 147 11 72 chr12 21705186 21706098 -122576391 + MSTA-int LTR MaLR 5 971 -609 315 167 0 0 chr12 21706098 21706152 -122576337 + AluSq/x SINE Alu 83 136 -166 835 229 0 0 chr12 21706152 21706318 -122576171 + AluJo/FRAM SINE Alu 137 302 0 8621 147 11 72 chr12 21706318 21706837 -122575652 + MSTA-int LTR MaLR 970 1379 -201 2284 95 0 3 chr12 21706837 21707132 -122575357 - AluY SINE Alu -17 294 1 8621 147 11 72 chr12 21707132 21707323 -122575166 + MSTA-int LTR MaLR 1379 1580 0 1697 168 160 19 chr12 21707324 21707698 -122574791 + MSTA LTR MaLR 2 428 0 1119 226 104 0 chr12 21707706 21707993 -122574496 - L1MC3 LINE L1 -540 5804 5488 1845 156 3 20 chr12 21708001 21708303 -122574186 - AluSx SINE Alu -15 297 1 1165 136 11 5 chr12 21708477 21708661 -122573828 - L1PA15 LINE L1 -112 6053 5869 1801 138 0 0 chr12 21708661 21708943 -122573546 + L1P4 LINE L1 5395 5676 -489 371 355 54 22 chr12 21709297 21709531 -122572958 + MIR SINE MIR 20 262 0 24 32 0 0 chr12 21712830 21712861 -122569628 + AT_rich Low_complexity Low_complexity 1 31 0 196 229 83 0 chr12 21713477 21713525 -122568964 - L2 LINE L2 -6 3266 3215 321 231 90 0 chr12 21713591 21713669 -122568820 + MIR SINE MIR 100 184 -78 2114 148 19 19 chr12 21713961 21714325 -122568164 + THE1B LTR MaLR 1 364 0 11488 98 4 6 chr12 21714325 21715908 -122566581 + THE1B-int LTR MaLR 1 1580 0 1955 138 33 25 chr12 21715908 21716269 -122566220 + THE1B LTR MaLR 1 364 0 2094 333 127 25 chr12 21717236 21718832 -122563657 + L2 LINE L2 107 1865 -1449 11366 222 32 30 chr12 21718840 21720871 -122561618 + L1PB4 LINE L1 907 2932 -3281 2070 142 0 3 chr12 21720871 21721174 -122561315 + AluSx SINE Alu 1 302 -10 11366 222 32 30 chr12 21721174 21724371 -122558118 + L1PB4 LINE L1 2932 6213 0 1724 336 101 31 chr12 21724372 21725772 -122556717 + L2 LINE L2 1833 3313 0 240 269 141 32 chr12 21726300 21726456 -122556033 - L3 LINE CR1 -594 983 811 338 292 64 0 chr12 21726471 21726652 -122555837 + L2 LINE L2 2781 2971 -301 205 241 35 17 chr12 21726987 21727045 -122555444 - L3 LINE CR1 -1079 498 440 26 50 0 0 chr12 21727871 21727911 -122554578 + AT_rich Low_complexity Low_complexity 1 40 0 2066 124 0 7 chr12 21728386 21728684 -122553805 + AluSg SINE Alu 1 296 -14 331 212 53 18 chr12 21730261 21730374 -122552115 + GA-rich Low_complexity Low_complexity 4 120 0 246 306 83 9 chr12 21730574 21730682 -122551807 + MIR3 SINE MIR 89 204 -4 32 67 0 0 chr12 21730868 21730928 -122551561 + AT_rich Low_complexity Low_complexity 1 60 0 193 179 71 36 chr12 21731162 21731218 -122551271 + MIR SINE MIR 110 167 -95 813 89 0 8 chr12 21731768 21731891 -122550598 + AluY SINE Alu 188 309 -2 29 47 0 0 chr12 21733326 21733369 -122549120 + AT_rich Low_complexity Low_complexity 1 43 0 448 312 126 34 chr12 21733489 21733752 -122548737 - L3 LINE CR1 -13 1564 1278 2180 102 3 3 chr12 21733959 21734252 -122548237 + AluSx SINE Alu 1 293 -19 586 154 54 85 chr12 21734358 21734488 -122548001 + MER63 DNA MER1_type 1 752 -84 48 43 0 0 chr12 21734974 21735043 -122547446 + AT_rich Low_complexity Low_complexity 1 69 0 1220 257 112 55 chr12 21735975 21736575 -122545914 + HsTC2a DNA Tc2 11 644 -100 621 335 48 9 chr12 21736581 21736811 -122545678 + L1M3d LINE L1 5 243 -5648 4143 94 19 0 chr12 21736905 21737482 -122545007 + L1PA10 LINE L1 5577 6164 -4 679 298 7 32 chr12 21737494 21737723 -122544766 + L1M3d LINE L1 252 688 -5203 183 42 0 0 chr12 21737723 21737747 -122544742 + (CAAAAA)n Simple_repeat Simple_repeat 4 27 0 834 304 82 56 chr12 21737750 21738279 -122544210 + L1M3d LINE L1 247 808 -5083 7802 171 48 42 chr12 21738298 21739832 -122542657 + L1MB1 LINE L1 747 2290 -5275 2211 187 14 0 chr12 21739823 21740241 -122542248 + L1MB1 LINE L1 4985 5408 -2157 * 4505 204 16 11 chr12 21740263 21741511 -122540978 + L1MB1 LINE L1 6064 7325 -262 7540 73 15 6 chr12 21741511 21742509 -122539980 + LTR13 LTR ERVK 1 1007 0 4505 204 16 11 chr12 21742509 21742715 -122539774 + L1MB1 LINE L1 7325 7528 -59 513 234 0 0 chr12 21742715 21742809 -122539680 - Tigger2 DNA MER2_type 0 2718 2625 487 148 0 0 chr12 21742832 21742913 -122539576 - L1 LINE L1 -2157 3989 3909 13615 160 33 40 chr12 21742919 21745548 -122536941 - Tigger2 DNA MER2_type -108 2610 1 323 312 0 32 chr12 21746013 21746138 -122536351 + Charlie8 DNA MER1_type 93 213 -2204 370 306 113 19 chr12 21748777 21749317 -122533172 - L1ME4a LINE L1 0 6121 5531 395 211 0 0 chr12 21749726 21749797 -122532692 + MER8 DNA MER2_type 169 239 0 333 0 0 0 chr12 21750453 21750490 -122531999 + (CA)n Simple_repeat Simple_repeat 2 38 0 2558 39 3 0 chr12 21750835 21751140 -122531349 + AluY SINE Alu 1 306 -5 503 302 47 51 chr12 21751673 21751928 -122530561 + MLT1J LTR MaLR 9 262 -249 260 167 0 0 chr12 21752027 21752075 -122530414 + MLT1J LTR MaLR 429 476 -35 195 271 21 0 chr12 21752109 21752157 -122530332 - L2 LINE L2 -1417 1897 1849 22 56 0 0 chr12 21752284 21752320 -122530169 + AT_rich Low_complexity Low_complexity 1 36 0 685 318 73 61 chr12 21753302 21753880 -122528609 + HAL1 LINE L1 831 1415 -1092 429 305 38 9 chr12 21753885 21754098 -122528391 + HAL1 LINE L1 1451 1669 -838 988 183 5 67 chr12 21754131 21754232 -122528257 + MER2 DNA MER2_type 1 82 -263 1712 172 10 3 chr12 21754232 21754535 -122527954 + AluSx SINE Alu 3 307 -5 988 183 5 67 chr12 21754535 21754657 -122527832 + MER2 DNA MER2_type 82 210 -135 56 61 0 0 chr12 21755258 21755356 -122527133 + AT_rich Low_complexity Low_complexity 1 98 0 867 225 14 27 chr12 21755623 21755845 -122526644 - MER20 DNA MER1_type 0 219 1 6613 215 82 87 chr12 21756533 21758614 -122523875 + L1M3 LINE L1 2286 4628 -1543 1248 219 14 28 chr12 21758614 21758897 -122523592 - AluJo SINE Alu -33 279 1 6613 215 82 87 chr12 21758897 21760048 -122522441 + L1M3 LINE L1 4628 5783 -388 1536 113 0 0 chr12 21760047 21760260 -122522229 + L1PA15 LINE L1 5418 5630 -535 * 1671 147 3 93 chr12 21760264 21760508 -122521981 + L1PA15 LINE L1 5837 6042 -123 2117 87 0 11 chr12 21760508 21760833 -122521656 + AluY SINE Alu 1 322 0 1671 147 3 93 chr12 21760833 21760940 -122521549 + L1PA15 LINE L1 6042 6157 -8 2479 264 60 25 chr12 21760946 21761344 -122521145 - L1M4 LINE L1 -1433 4713 4330 306 0 0 0 chr12 21761344 21761378 -122521111 + (TG)n Simple_repeat Simple_repeat 1 34 0 2479 264 60 25 chr12 21761378 21761931 -122520558 - L1M4 LINE L1 -1816 4330 3729 * 4651 199 42 11 chr12 21761928 21763003 -122519486 - L1MC2 LINE L1 0 6842 5735 1672 235 15 30 chr12 21763009 21763477 -122519012 - L1MC2 LINE L1 -4824 1822 1362 1030 251 55 26 chr12 21763488 21763831 -122518658 - MLT1A1 LTR MaLR -11 354 2 22 56 0 0 chr12 21763838 21763874 -122518615 + AT_rich Low_complexity Low_complexity 1 36 0 470 254 0 17 chr12 21763892 21764010 -122518479 - L1MC2 LINE L1 -5825 717 602 22 0 0 0 chr12 21764297 21764319 -122518170 + AT_rich Low_complexity Low_complexity 1 22 0 510 256 108 26 chr12 21764654 21764959 -122517530 + L1ME LINE L1 500 829 -5241 383 145 40 13 chr12 21765013 21765089 -122517400 - L1ME LINE L1 -3774 2306 2229 1624 192 33 3 chr12 21765107 21765466 -122517023 + L1ME LINE L1 2310 2679 -3401 2260 113 7 0 chr12 21766042 21766342 -122516147 - AluSx SINE Alu -10 302 1 601 141 8 16 chr12 21766356 21766477 -122516012 + L1ME LINE L1 2700 2819 -3261 1812 162 3 7 chr12 21766508 21766805 -122515684 - AluSx SINE Alu -16 296 1 343 279 26 7 chr12 21766830 21766984 -122515505 + (TA)n Simple_repeat Simple_repeat 1 157 0 425 349 130 37 chr12 21767013 21767295 -122515194 + HAL1 LINE L1 1219 1562 -945 2251 90 3 3 chr12 21767295 21767583 -122514906 - AluY SINE Alu -16 295 8 425 349 130 37 chr12 21767583 21767762 -122514727 + HAL1 LINE L1 1562 1723 -784 1049 197 128 66 chr12 21767974 21768248 -122514241 - MLT1A1 LTR MaLR 0 365 75 259 269 10 39 chr12 21768754 21768858 -122513631 + L1M4 LINE L1 2539 2639 -3507 2112 117 0 36 chr12 21768896 21769205 -122513284 + AluSg SINE Alu 1 298 -12 1390 127 5 9 chr12 21769301 21769522 -122512967 + L1PA15 LINE L1 5944 6163 -2 8619 233 65 53 chr12 21769736 21770433 -122512056 + L1MCa LINE L1 1 688 -5738 1825 117 4 11 chr12 21770433 21770699 -122511790 + AluSg1 SINE Alu 35 298 -11 8619 233 65 53 chr12 21770699 21772290 -122510199 + L1MCa LINE L1 688 2258 -4168 1692 192 45 3 chr12 21772290 21772624 -122509865 + MER7A DNA MER2_type 1 346 0 8619 233 65 53 chr12 21772624 21772886 -122509603 + L1MCa LINE L1 2258 2515 -3911 530 43 0 0 chr12 21772886 21772956 -122509533 + L1PA4 LINE L1 6083 6152 -3 8619 233 65 53 chr12 21772956 21774149 -122508340 + L1MCa LINE L1 2515 3802 -2624 2272 103 0 0 chr12 21774149 21774460 -122508029 + AluY SINE Alu 1 311 0 8619 233 65 53 chr12 21774460 21774814 -122507675 + L1MCa LINE L1 3802 4150 -2276 2169 163 11 3 chr12 21774843 21775204 -122507285 + THE1B LTR MaLR 1 364 0 7035 131 40 47 chr12 21775204 21776431 -122506058 + THE1B-int LTR MaLR 1 1218 -362 189 293 129 48 chr12 21776438 21776585 -122505904 - L2 LINE L2 -30 3283 3125 27 29 0 0 chr12 21776594 21776628 -122505861 + AT_rich Low_complexity Low_complexity 1 34 0 227 187 16 47 chr12 21776680 21776945 -122505544 + (TA)n Simple_repeat Simple_repeat 1 256 0 535 188 14 30 chr12 21776984 21777229 -122505260 + (TA)n Simple_repeat Simple_repeat 1 240 0 247 257 20 40 chr12 21777233 21777385 -122505104 + (CATATA)n Simple_repeat Simple_repeat 2 150 0 * 493 189 22 42 chr12 21777321 21777684 -122504805 + (TA)n Simple_repeat Simple_repeat 1 356 0 1116 254 103 35 chr12 21777736 21778165 -122504324 + MLT1D LTR MaLR 6 463 -42 800 273 131 4 chr12 21778216 21778491 -122503998 - L2 LINE L2 -165 3148 2839 769 335 21 10 chr12 21778995 21779255 -122503234 + MIR SINE MIR 2 262 0 23 54 0 0 chr12 21779436 21779473 -122503016 + AT_rich Low_complexity Low_complexity 1 37 0 2277 103 0 0 chr12 21779711 21780013 -122502476 - AluSg SINE Alu -8 302 1 2324 129 85 14 chr12 21780408 21780842 -122501647 + MER4C LTR ERV1 1 465 0 5766 154 127 61 chr12 21780853 21780953 -122501536 + MER4C-int LTR ERV1 1 93 -6505 4240 74 4 0 chr12 21780953 21781505 -122500984 + MER41A LTR ERV1 1 554 0 5766 154 127 61 chr12 21781505 21782412 -122500077 + MER4C-int LTR ERV1 93 938 -5660 342 45 0 0 chr12 21782412 21782456 -122500033 + (TG)n Simple_repeat Simple_repeat 1 44 0 5766 154 127 61 chr12 21782456 21783228 -122499261 + MER4C-int LTR ERV1 938 1657 -4941 2064 130 7 0 chr12 21783228 21783520 -122498969 + AluSg SINE Alu 7 300 -10 5766 154 127 61 chr12 21783520 21784132 -122498357 + MER4C-int LTR ERV1 1657 2485 -4113 14419 168 48 46 chr12 21784133 21785262 -122497227 + MER4C-int LTR ERV1 2846 3971 -2627 2105 147 0 10 chr12 21785262 21785576 -122496913 - AluSx SINE Alu -1 311 1 14419 168 48 46 chr12 21785576 21788189 -122494300 + MER4C-int LTR ERV1 3971 6595 -3 1725 100 30 7 chr12 21788195 21788464 -122494025 + MER4C LTR ERV1 1 275 -190 2564 100 60 21 chr12 21788472 21788903 -122493586 + LTR7 LTR ERV1 1 448 -2 14673 93 22 15 chr12 21788905 21791746 -122490743 + HERVH LTR ERV1 1 2985 -4728 807 144 20 0 chr12 21791742 21791888 -122490601 + HERVH LTR ERV1 3140 3288 -4425 * 3269 101 4 6 chr12 21791880 21792383 -122490106 + HERVH LTR ERV1 3492 3993 -3720 2629 143 8 11 chr12 21792385 21793003 -122489486 + HERVH LTR ERV1 4488 5149 -2564 1127 96 0 6 chr12 21793004 21793182 -122489307 + HERVH LTR ERV1 5600 5776 -1937 2269 79 3 10 chr12 21793201 21793493 -122488996 + AluY SINE Alu 1 290 -21 6377 136 26 7 chr12 21793494 21795024 -122487465 + L1MA1 LINE L1 4739 6302 0 239 292 23 88 chr12 21795503 21795674 -122486815 - L2 LINE L2 -2 3311 3152 29 28 0 0 chr12 21795702 21795738 -122486751 + AT_rich Low_complexity Low_complexity 1 36 0 228 67 0 0 chr12 21796094 21796124 -122486365 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 2343 65 0 23 chr12 21796174 21796481 -122486008 - AluY SINE Alu -11 300 1 241 297 191 3 chr12 21796510 21796793 -122485696 - L1MC4a LINE L1 -1866 5942 5607 331 275 22 22 chr12 21796925 21797103 -122485386 + (TA)n Simple_repeat Simple_repeat 2 179 0 2317 250 52 17 chr12 21797178 21797809 -122484680 + MER82 DNA MER2_type 1 653 0 2344 100 3 0 chr12 21798883 21799184 -122483305 + AluSp SINE Alu 1 302 -11 21 0 0 0 chr12 21801097 21801118 -122481371 + AT_rich Low_complexity Low_complexity 1 21 0 252 235 0 0 chr12 21801134 21801202 -122481287 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 2574 43 0 3 chr12 21801321 21801620 -122480869 - AluY SINE Alu -13 298 1 216 274 126 52 chr12 21801783 21801918 -122480571 - MER5B DNA MER1_type -30 148 4 214 250 44 44 chr12 21802879 21802947 -122479542 + L2 LINE L2 82 149 -3165 1218 81 0 0 chr12 21802952 21803101 -122479388 + AluY SINE Alu 1 149 -162 4190 125 170 86 chr12 21803103 21804523 -122477966 + pTR5 LTR ERV1 745 2428 -10 1237 89 12 6 chr12 21804523 21804691 -122477798 + AluSg/x SINE Alu 132 300 -12 3660 301 198 25 chr12 21804697 21806960 -122475529 + L2 LINE L2 156 2809 -505 605 301 62 67 chr12 21806976 21807365 -122475124 + L2 LINE L2 2927 3313 0 739 328 102 14 chr12 21807598 21808136 -122474353 + L2 LINE L2 2730 3313 0 245 317 0 24 chr12 21808228 21808310 -122474179 + Charlie2 DNA MER1_type 3 82 -2700 345 240 0 0 chr12 21808320 21808416 -122474073 - L1MA10 LINE L1 -8 6326 6231 308 299 77 5 chr12 21808436 21808657 -122473832 - L1ME2 LINE L1 -128 6036 5800 2273 100 7 0 chr12 21808657 21808958 -122473531 - AluY SINE Alu -8 303 1 835 244 174 36 chr12 21808961 21809511 -122472978 - L1ME2 LINE L1 -816 5330 4705 547 229 57 61 chr12 21809543 21809788 -122472701 - L1ME2 LINE L1 -1939 4207 3964 397 196 72 39 chr12 21809837 21809990 -122472499 + L1M4 LINE L1 3830 3987 -2159 * 930 220 73 0 chr12 21809989 21810248 -122472241 + L1MA4 LINE L1 5986 6263 -37 233 162 29 44 chr12 21810253 21810321 -122472168 + L1M4 LINE L1 3975 4041 -2105 823 214 30 10 chr12 21810610 21810811 -122471678 + MER3 DNA MER1_type 1 205 -4 516 316 128 20 chr12 21811123 21811420 -122471069 - L1ME LINE L1 -389 5732 5404 225 369 97 0 chr12 21812792 21812895 -122469594 + L2 LINE L2 3155 3267 -5 1959 146 3 13 chr12 21812974 21813276 -122469213 + AluSx SINE Alu 2 300 -12 1529 210 22 92 chr12 21813322 21813865 -122468624 + MLT1D LTR MaLR 1 505 0 228 277 15 0 chr12 21814169 21814234 -122468255 + LTR16B LTR ERVL 3 68 -396 591 261 62 23 chr12 21814585 21814732 -122467757 + MIR SINE MIR 14 154 -108 2432 86 0 0 chr12 21814732 21815036 -122467453 + AluY SINE Alu 1 304 -7 216 0 0 0 chr12 21815036 21815060 -122467429 + (TA)n Simple_repeat Simple_repeat 2 25 0 591 261 62 23 chr12 21815060 21815087 -122467402 + MIR SINE MIR 153 196 -66 1107 223 20 13 chr12 21815093 21815393 -122467096 + L1MB7 LINE L1 5858 6165 -1 938 235 48 101 chr12 21815484 21815879 -122466610 + MLT1B LTR MaLR 1 374 -16 1333 178 68 34 chr12 21815898 21816222 -122466267 + MLT1B-int LTR MaLR 4 342 -1029 2109 109 13 7 chr12 21816222 21816524 -122465965 - AluY SINE Alu -7 304 1 1333 178 68 34 chr12 21816524 21816553 -122465936 + MLT1B-int LTR MaLR 342 369 -1002 292 197 15 0 chr12 21816667 21816733 -122465756 + MLT1B-int LTR MaLR 680 746 -989 1005 219 23 0 chr12 21816883 21817098 -122465391 + MLT1B-int LTR MaLR 1321 1540 -195 2859 111 21 74 chr12 21817169 21817356 -122465133 - MER4B LTR ERV1 0 779 584 2252 110 3 0 chr12 21817356 21817656 -122464833 + AluY SINE Alu 1 301 -10 2859 111 21 74 chr12 21817656 21818113 -122464376 - MER4B LTR ERV1 -195 584 1 226 259 0 19 chr12 21818114 21818168 -122464321 - L2 LINE L2 -1051 2263 2211 187 295 9 29 chr12 21818256 21818361 -122464128 - L2 LINE L2 -1230 2084 1982 2417 75 10 0 chr12 21818364 21818672 -122463817 + AluY SINE Alu 1 311 0 17710 180 52 5 chr12 21819607 21823640 -122458849 + L1MA2 LINE L1 17 4239 -3326 1305 127 17 38 chr12 21823679 21823915 -122458574 - THE1B LTR MaLR -2 362 132 6630 113 22 9 chr12 21823915 21824934 -122457555 - THE1B-int LTR MaLR -548 1032 1 1913 169 25 33 chr12 21824934 21825301 -122457188 - THE1B LTR MaLR 0 364 1 5799 153 21 6 chr12 21825301 21826719 -122455770 + L1MA2 LINE L1 6286 7723 0 24536 105 29 32 chr12 21826727 21831610 -122450879 + Harlequin LTR ERV1 17 3395 0 3659 148 2 5 chr12 21831612 21832193 -122450296 + Harlequin LTR ERV1 4396 4974 -3425 526 226 75 0 chr12 21832162 21832441 -122450048 + Harlequin LTR ERV1 842 1141 -5755 * 2053 28 4 4 chr12 21832642 21832891 -122449598 + L1PA3 LINE L1 5901 6149 -6 21 0 0 0 chr12 21832892 21832913 -122449576 + AT_rich Low_complexity Low_complexity 1 21 0 2997 249 23 49 chr12 21832954 21833056 -122449433 + L1ME3 LINE L1 2308 2411 -4015 1764 176 42 6 chr12 21833056 21833392 -122449097 + MER7A DNA MER2_type 1 346 0 2997 249 23 49 chr12 21833392 21834426 -122448063 + L1ME3 LINE L1 2411 3406 -3020 2146 92 0 0 chr12 21834426 21834697 -122447792 + AluY SINE Alu 3 273 -38 2997 249 23 49 chr12 21834697 21834923 -122447566 + L1ME3 LINE L1 3406 3636 -2790 * 3235 137 59 21 chr12 21834896 21835568 -122446921 + L1PB1 LINE L1 2354 3052 -3810 375 94 0 0 chr12 21835568 21835621 -122446868 - AluY SINE Alu 0 300 248 1407 67 72 0 chr12 21835621 21835801 -122446688 - AluY SINE Alu -118 193 1 12059 205 33 5 chr12 21835801 21839048 -122443441 + L1PB1 LINE L1 3041 6376 -491 2555 158 23 5 chr12 21839056 21839499 -122442990 + L1PB1 LINE L1 6417 6867 0 339 25 0 0 chr12 21839541 21839581 -122442908 + (CA)n Simple_repeat Simple_repeat 1 40 0 23 86 0 0 chr12 21839785 21839843 -122442646 + AT_rich Low_complexity Low_complexity 1 58 0 2127 127 7 0 chr12 21839941 21840240 -122442249 - AluSg SINE Alu -6 304 4 34203 102 14 11 chr12 21840320 21845384 -122437105 + L1PA6 LINE L1 11 5090 -1056 1047 59 0 0 chr12 21845389 21845524 -122436965 - L1PA6 LINE L1 -7 6147 6013 6511 61 40 1 chr12 21845544 21846578 -122435911 + L1PA6 LINE L1 5084 6151 -3 441 287 32 44 chr12 21846585 21846607 -122435882 + L1ME3 LINE L1 5076 5097 -1765 2189 109 3 3 chr12 21846607 21846909 -122435580 + AluSc SINE Alu 1 302 -7 441 287 32 44 chr12 21846909 21847012 -122435477 + L1ME3 LINE L1 5097 5200 -1662 2417 71 0 0 chr12 21847012 21847309 -122435180 - AluY SINE Alu -14 297 1 441 287 32 44 chr12 21847309 21847473 -122435016 + L1ME3 LINE L1 5200 5363 -1499 307 299 39 91 chr12 21847614 21847845 -122434644 + L1ME3 LINE L1 5511 5729 -1133 611 289 53 24 chr12 21848077 21848463 -122434026 + L1ME3 LINE L1 5985 6383 -503 1026 199 166 14 chr12 21848577 21848854 -122433635 - MSTA LTR MaLR -109 319 1 8134 168 15 48 chr12 21848854 21850487 -122432002 - MSTA-int LTR MaLR 0 1580 3 1752 135 170 22 chr12 21850489 21850860 -122431629 - MSTA LTR MaLR 0 428 3 401 326 53 26 chr12 21850862 21851052 -122431437 + L1ME3 LINE L1 6391 6585 -293 213 324 38 19 chr12 21851749 21851854 -122430635 - L2 LINE L2 -66 3247 3141 420 157 47 6 chr12 21851856 21852028 -122430461 + (TA)n Simple_repeat Simple_repeat 2 180 0 1959 183 45 33 chr12 21852028 21852555 -122429934 - MLT2A2 LTR ERVL -8 546 5 237 101 51 25 chr12 21852555 21852634 -122429855 + (TA)n Simple_repeat Simple_repeat 1 81 0 1399 222 91 63 chr12 21852655 21853083 -122429406 + MLT1D LTR MaLR 6 445 -60 4121 168 47 60 chr12 21853083 21854746 -122427743 + MER4-int LTR ERV1 1357 2397 -4201 207 0 0 0 chr12 21854746 21854769 -122427720 + (TAAAA)n Simple_repeat Simple_repeat 1 23 0 4121 168 47 60 chr12 21854769 21854857 -122427632 + MER4-int LTR ERV1 2397 2485 -4113 225 214 29 43 chr12 21856088 21856158 -122426331 + CT-rich Low_complexity Low_complexity 2 70 0 2161 164 92 2 chr12 21856453 21856855 -122425634 - Tigger2 DNA MER2_type -1 2717 2280 422 134 15 0 chr12 21856853 21856920 -122425569 - Tigger2 DNA MER2_type -2649 69 2 * 279 93 0 0 chr12 21856922 21856965 -122425524 + (CA)n Simple_repeat Simple_repeat 2 44 0 245 188 0 42 chr12 21856983 21857031 -122425458 - MLT2D LTR ERVL -125 395 350 751 161 7 0 chr12 21857093 21857230 -122425259 - MLT2D LTR ERVL -263 151 14 484 315 42 15 chr12 21857471 21857731 -122424758 - L1M4 LINE L1 -1368 4778 4512 442 266 37 21 chr12 21858000 21858188 -122424301 - L1M4 LINE L1 -1944 4202 4012 308 197 34 26 chr12 21858231 21858348 -122424141 + MER69 DNA AcHobo 2379 2496 -30 519 206 0 19 chr12 21858349 21858456 -122424033 + FRAM SINE Alu 65 169 -7 331 294 137 41 chr12 21858549 21858746 -122423743 - MLT1L LTR MaLR -179 436 221 627 262 0 0 chr12 21859220 21859409 -122423080 - AluJ SINE Alu 0 345 157 * 663 143 0 84 chr12 21859408 21859527 -122422962 - AluJ SINE Alu -203 109 1 21 0 0 0 chr12 21859533 21859554 -122422935 + AT_rich Low_complexity Low_complexity 1 21 0 473 299 279 30 chr12 21860441 21860979 -122421510 + L2 LINE L2 44 715 -2599 10454 189 26 42 chr12 21861042 21864797 -122417692 - L1MA3 LINE L1 -5 7719 4032 13759 154 43 31 chr12 21864822 21867428 -122415061 - L1MA3 LINE L1 -3824 3741 1104 409 222 65 9 chr12 21867436 21867544 -122414945 - L1MA3 LINE L1 -7436 129 16 1404 164 17 0 chr12 21868421 21868652 -122413837 - L1P3 LINE L1 -6217 244 10 316 259 86 80 chr12 21868864 21869026 -122413463 - MLT1L LTR MaLR -299 168 6 2256 92 3 3 chr12 21869371 21869666 -122412823 - AluSg SINE Alu -15 295 1 336 274 102 32 chr12 21869894 21870051 -122412438 - L1ME LINE L1 -403 5718 5551 6711 165 49 15 chr12 21870738 21872436 -122410053 + L1PBa LINE L1 1690 3478 -3384 7474 25 8 0 chr12 21872436 21873451 -122409038 + L1PA3 LINE L1 5135 6159 0 6711 165 49 15 chr12 21873451 21873928 -122408561 + L1PBa LINE L1 3478 3937 -2925 63 84 0 0 chr12 21874162 21874316 -122408173 + AT_rich Low_complexity Low_complexity 1 154 0 342 298 199 35 chr12 21874345 21874627 -122407862 - L2 LINE L2 -37 3276 2949 659 319 77 50 chr12 21874835 21875211 -122407278 - L2 LINE L2 -1 3312 2927 4229 286 144 45 chr12 21875213 21877720 -122404769 - L2 LINE L2 -491 2823 70 384 319 165 28 chr12 21878052 21878234 -122404255 - MIR SINE MIR -31 231 25 199 356 42 17 chr12 21878730 21878848 -122403641 + MER5A DNA MER1_type 41 161 -28 237 204 0 0 chr12 21879155 21879204 -122403285 + L1MC4 LINE L1 6659 6707 -1335 43840 43 2 1 chr12 21880590 21886741 -122395748 - L1PA4 LINE L1 0 6155 2 25 65 0 0 chr12 21887933 21887979 -122394510 + AT_rich Low_complexity Low_complexity 1 46 0 24 32 0 0 chr12 21888277 21888308 -122394181 + AT_rich Low_complexity Low_complexity 1 31 0 2567 237 51 8 chr12 21888354 21888979 -122393510 - MER82 DNA MER2_type -1 652 1 279 286 200 8 chr12 21889266 21889521 -122392968 + L1MC4a LINE L1 5639 5942 -1866 23 33 0 0 chr12 21889958 21889988 -122392501 + AT_rich Low_complexity Low_complexity 1 30 0 333 331 41 35 chr12 21890037 21890182 -122392307 + L2 LINE L2 3125 3270 -2 22 35 0 0 chr12 21890217 21890246 -122392243 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr12 21890808 21890837 -122391652 + AT_rich Low_complexity Low_complexity 1 29 0 193 341 73 0 chr12 21891091 21891173 -122391316 - MIR SINE MIR -128 134 47 875 316 19 0 chr12 21892214 21892470 -122390019 - MIR SINE MIR 0 262 2 4947 214 14 3 chr12 21892881 21893973 -122388516 + L1PA15-16 LINE L1 1891 3000 -3849 181 191 149 0 chr12 21893991 21894038 -122388451 + MIR SINE MIR 196 249 -13 1416 162 37 68 chr12 21894076 21894372 -122388117 - AluJb SINE Alu -23 289 3 234 366 30 24 chr12 21894382 21894546 -122387943 - L1ME LINE L1 -588 5854 5690 3738 279 30 4 chr12 21894668 21896047 -122386442 - L1ME LINE L1 -2460 3966 2552 10437 83 1 9 chr12 21896055 21898185 -122384304 - L1PA6 LINE L1 -13 6141 3947 9866 98 10 0 chr12 21898185 21899558 -122382931 + L1P3 LINE L1 29 1415 -5046 647 236 0 23 chr12 21899560 21899711 -122382778 - L1ME LINE L1 -4008 2599 2451 1687 195 32 6 chr12 21899711 21900049 -122382440 - MER7A DNA MER2_type -1 345 1 647 236 0 23 chr12 21900049 21900071 -122382418 - L1ME LINE L1 -4156 2451 2430 1737 199 119 9 chr12 21900079 21900532 -122381957 - L1ME LINE L1 -4204 2222 1720 * 5435 204 56 54 chr12 21900530 21902018 -122380471 - L1ME LINE L1 -4915 1511 21 496 296 61 36 chr12 21902084 21902446 -122380043 - L1MDa LINE L1 -3231 2984 2614 319 351 27 11 chr12 21902634 21902822 -122379667 - L1MDa LINE L1 -3846 2369 2179 1598 184 64 50 chr12 21902938 21903296 -122379193 + MLT1A1 LTR MaLR 3 365 0 227 260 13 13 chr12 21903594 21903671 -122378818 - L1MDa LINE L1 -4618 1597 1521 374 298 29 55 chr12 21903714 21903952 -122378537 - L1MDa LINE L1 -4912 1484 1253 254 240 13 67 chr12 21904050 21904200 -122378289 + T-rich Low_complexity Low_complexity 5 146 0 21 0 0 0 chr12 21905036 21905057 -122377432 + AT_rich Low_complexity Low_complexity 1 21 0 216 159 45 0 chr12 21905907 21905951 -122376538 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 2499 53 3 0 chr12 21906356 21906655 -122375834 - AluY SINE Alu -11 300 1 23 54 0 0 chr12 21907062 21907099 -122375390 + AT_rich Low_complexity Low_complexity 1 37 0 2031 130 3 0 chr12 21907170 21907462 -122375027 + AluSg SINE Alu 1 293 -17 275 104 21 0 chr12 21907608 21907656 -122374833 + L1MA9 LINE L1 6252 6300 -12 565 253 160 3 chr12 21907935 21908394 -122374095 - MER114 LTR ERV -6 642 88 5951 101 19 16 chr12 21908434 21910436 -122372053 + L1PA14 LINE L1 4183 6161 0 28 35 0 35 chr12 21910472 21910494 -122371995 + AT_rich Low_complexity Low_complexity 1 22 -33 1845 174 0 0 chr12 21910494 21910787 -122371702 + AluSx SINE Alu 14 306 -6 28 35 0 35 chr12 21910787 21910821 -122371668 + AT_rich Low_complexity Low_complexity 22 55 0 289 246 0 73 chr12 21912161 21912271 -122370218 - L1MDa LINE L1 -5476 729 628 1447 191 88 9 chr12 21912271 21912600 -122369889 - MLT1A1 LTR MaLR 0 365 11 210 263 20 101 chr12 21913720 21913819 -122368670 + L2 LINE L2 3178 3268 -4 298 305 79 30 chr12 21914127 21914291 -122368198 + L1MC2 LINE L1 612 990 -5656 * 1813 212 45 27 chr12 21914276 21914313 -122368176 + L1MC2 LINE L1 1323 1358 -5288 1208 244 58 19 chr12 21914313 21914673 -122367816 + MLT1A2 LTR MaLR 1 374 0 1813 212 45 27 chr12 21914673 21915150 -122367339 + L1MC2 LINE L1 1358 1846 -4800 2935 197 24 26 chr12 21915157 21915836 -122366653 + L1MC2 LINE L1 5752 6428 -414 3709 212 51 23 chr12 21916335 21916560 -122365929 - L1MB2 LINE L1 -12 5983 5766 2173 118 0 19 chr12 21916560 21916874 -122365615 - AluSg SINE Alu 0 310 3 3709 212 51 23 chr12 21916874 21917883 -122364606 - L1MB2 LINE L1 -229 5766 4711 1436 271 67 27 chr12 21917879 21918687 -122363802 - L1MB2 LINE L1 -4586 1315 365 * 376 273 114 53 chr12 21918984 21919211 -122363278 - L1MB2 LINE L1 -5650 241 1 807 319 48 69 chr12 21919746 21920408 -122362081 - L2 LINE L2 -119 3194 2547 1217 225 24 78 chr12 21920409 21920791 -122361698 - MLT1A1 LTR MaLR -4 361 1 693 203 94 61 chr12 21921611 21921823 -122360666 + MER20 DNA MER1_type 1 219 0 430 267 103 75 chr12 21922087 21922447 -122360042 - HAL1 LINE L1 -1244 1263 894 2188 77 53 0 chr12 21922527 21922812 -122359677 - AluY SINE Alu -11 300 1 22 35 0 0 chr12 21922978 21923007 -122359482 + AT_rich Low_complexity Low_complexity 1 29 0 195 304 0 43 chr12 21923785 21923854 -122358635 + L2 LINE L2 1832 1897 -1417 482 327 40 5 chr12 21924104 21924303 -122358186 - MLT1J LTR MaLR -300 211 6 250 343 67 29 chr12 21924888 21924993 -122357496 + L2 LINE L2 3175 3283 -30 284 250 0 0 chr12 21925807 21925871 -122356618 + Tigger2 DNA MER2_type 1 64 -2654 239 342 13 0 chr12 21925946 21926022 -122356467 - MER2 DNA MER2_type -268 77 1 328 323 91 32 chr12 21926324 21926823 -122355666 + L1ME4a LINE L1 5527 6064 -57 2228 141 28 0 chr12 21926823 21927177 -122355312 + THE1B LTR MaLR 1 364 0 328 323 91 32 chr12 21927177 21927238 -122355251 + L1ME4a LINE L1 6064 6120 -1 272 284 80 0 chr12 21928196 21928284 -122354205 + L2 LINE L2 3178 3272 0 246 186 16 33 chr12 21929733 21929801 -122352688 - Charlie8 DNA MER1_type -997 1420 1362 362 296 0 32 chr12 21929876 21930001 -122352488 - Charlie8 DNA MER1_type -2204 213 93 327 177 0 0 chr12 21930414 21930476 -122352013 - L1MB1 LINE L1 -1 5991 5930 1262 189 24 0 chr12 21930476 21930730 -122351759 + Tigger2 DNA MER2_type 3 262 -2456 1331 325 20 47 chr12 21930741 21931374 -122351115 + L1PA13 LINE L1 788 1403 -6171 306 320 10 0 chr12 21931495 21931592 -122350897 + L1PA13 LINE L1 2085 2182 -5399 4900 265 33 25 chr12 21931861 21931966 -122350523 + L1PA13 LINE L1 2203 2306 -5278 1646 189 3 3 chr12 21931966 21932251 -122350238 - AluJb SINE Alu -27 285 1 4900 265 33 25 chr12 21932251 21934869 -122347620 + L1PA13 LINE L1 2306 4992 -2592 12710 178 20 11 chr12 21934906 21937251 -122345238 + Tigger2 DNA MER2_type 251 2615 -103 1277 174 14 5 chr12 21937252 21937470 -122345019 + MSTA LTR MaLR 1 220 -208 3459 175 34 14 chr12 21937485 21938183 -122344306 - L1MB1 LINE L1 -124 5868 5157 1844 127 11 7 chr12 21938211 21938495 -122343994 - AluSx SINE Alu -18 294 10 1243 184 37 52 chr12 21938495 21938762 -122343727 - L1MA8 LINE L1 -11 6280 6017 2455 166 24 11 chr12 21938762 21939214 -122343275 + LTR22A LTR ERVK 1 458 0 1243 184 37 52 chr12 21939214 21939273 -122343216 - L1MA8 LINE L1 -274 6017 5959 1741 152 29 3 chr12 21939286 21939596 -122342893 - L1PB3 LINE L1 -2 6152 5835 252 295 34 13 chr12 21939596 21939745 -122342744 - L1MB1 LINE L1 -825 5145 4994 * 6137 225 48 70 chr12 21939733 21942070 -122340419 - L1MB1 LINE L1 -1327 4643 2357 546 219 10 0 chr12 21942083 21942179 -122340310 - MER2 DNA MER2_type -247 98 2 239 219 24 24 chr12 21942181 21942263 -122340226 - L1MB1 LINE L1 -3615 2355 2274 1170 181 11 67 chr12 21942350 21942549 -122339940 - MSTB-int LTR MaLR -1116 535 353 2266 91 0 3 chr12 21942549 21942846 -122339643 - AluY SINE Alu -15 296 1 1170 181 11 67 chr12 21942846 21942916 -122339573 - MSTB-int LTR MaLR -1298 353 281 1098 83 6 13 chr12 21942916 21943072 -122339417 - AluSp SINE Alu -158 155 1 191 59 0 29 chr12 21943145 21943179 -122339310 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1588 179 11 0 chr12 21943208 21943488 -122339001 - MSTB-int LTR MaLR -1368 283 1 1791 220 59 5 chr12 21943488 21943892 -122338597 - MSTB LTR MaLR 0 426 1 599 302 73 90 chr12 21943894 21944165 -122338324 - L1MB1 LINE L1 -5110 781 507 197 33 33 0 chr12 21944165 21944195 -122338294 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 599 302 73 90 chr12 21944195 21944743 -122337746 - L1MB1 LINE L1 -5384 507 210 603 342 26 4 chr12 21944768 21944996 -122337493 - L1MB1 LINE L1 -5651 240 8 1284 290 82 30 chr12 21945007 21945613 -122336876 - HsTC2a DNA Tc2 -102 642 5 189 238 175 0 chr12 21946272 21946335 -122336154 - L2 LINE L2 -1 3312 3239 326 214 51 86 chr12 21946997 21947114 -122335375 - MER63 DNA MER1_type -309 753 15 378 373 113 0 chr12 21947405 21947652 -122334837 + L3 LINE CR1 1278 1552 -25 202 50 50 25 chr12 21947826 21947866 -122334623 + (TTTTC)n Simple_repeat Simple_repeat 5 45 0 21 36 0 0 chr12 21948441 21948469 -122334020 + AT_rich Low_complexity Low_complexity 1 28 0 1928 131 3 11 chr12 21948521 21948856 -122333633 - AluSx SINE Alu 0 333 1 215 338 39 0 chr12 21948856 21948933 -122333556 + L2 LINE L2 3234 3313 0 235 244 13 39 chr12 21948953 21949031 -122333458 + L1ME LINE L1 5841 5916 -205 3957 57 0 6 chr12 21950638 21951143 -122331346 + L1PA8 LINE L1 5666 6167 -5 22 0 0 0 chr12 21951564 21951586 -122330903 + AT_rich Low_complexity Low_complexity 1 22 0 276 309 154 44 chr12 21951691 21951827 -122330662 - MIR SINE MIR -100 162 12 247 265 29 0 chr12 21952477 21952545 -122329944 - MIR3 SINE MIR -3 205 136 882 259 25 0 chr12 21952918 21953154 -122329335 + Charlie1 DNA MER1_type 1 242 -2519 451 224 0 40 chr12 21953139 21953264 -122329225 + Charlie1 DNA MER1_type 2624 2743 -18 * 204 204 74 19 chr12 21953283 21953337 -122329152 - MIR SINE MIR -86 176 120 1248 222 116 6 chr12 21953406 21953735 -122328754 - MLT1A1 LTR MaLR 0 365 1 28 79 0 0 chr12 21953947 21954010 -122328479 + AT_rich Low_complexity Low_complexity 1 63 0 230 321 110 37 chr12 21954200 21954309 -122328180 - MIR3 SINE MIR -3 205 89 310 284 11 11 chr12 21954502 21954597 -122327892 + CT-rich Low_complexity Low_complexity 2 96 0 5077 180 20 9 chr12 21955896 21957799 -122324690 - L1PA16 LINE L1 -10 6156 4233 42332 35 22 2 chr12 21957816 21963843 -122318646 - L1PA2 LINE L1 -3 6152 4 3020 221 14 42 chr12 21963847 21964698 -122317791 - L1 LINE L1 -1904 4242 3416 243 61 0 0 chr12 21964885 21964918 -122317571 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 254 352 57 0 chr12 21966877 21967036 -122315453 - L2 LINE L2 -300 2972 2805 252 309 96 34 chr12 21967079 21967257 -122315232 + L3 LINE CR1 818 1006 -571 680 286 98 137 chr12 21967736 21968517 -122313972 - L2 LINE L2 0 3313 2503 1920 147 3 3 chr12 21968517 21968816 -122313673 - AluSx SINE Alu -13 299 1 680 286 98 137 chr12 21968816 21969119 -122313370 - L2 LINE L2 -810 2503 2198 524 247 0 0 chr12 21969119 21969246 -122313243 - FRAM SINE Alu 0 180 54 680 286 98 137 chr12 21969246 21969484 -122313005 - L2 LINE L2 -1115 2198 1952 685 94 9 0 chr12 21969490 21969596 -122312893 + AluSg/x SINE Alu 197 303 -6 2351 201 7 56 chr12 21969596 21970149 -122312340 + L1 LINE L1 3696 4221 -1925 2097 180 50 16 chr12 21970148 21970729 -122311760 + L1P5 LINE L1 5116 5711 -445 * 26 30 0 0 chr12 21970899 21970932 -122311557 + AT_rich Low_complexity Low_complexity 1 33 0 225 0 0 0 chr12 21971128 21971153 -122311336 + (A)n Simple_repeat Simple_repeat 1 25 0 324 120 0 0 chr12 21971153 21971203 -122311286 + (TA)n Simple_repeat Simple_repeat 2 51 0 22 56 0 0 chr12 21973647 21973683 -122308806 + AT_rich Low_complexity Low_complexity 1 36 0 314 365 66 10 chr12 21973683 21973880 -122308609 - MIR SINE MIR 0 262 55 245 284 0 0 chr12 21973921 21973988 -122308501 + (TA)n Simple_repeat Simple_repeat 2 68 0 3584 179 47 61 chr12 21974469 21974888 -122307601 + L1MC2 LINE L1 5478 5901 -443 1876 163 0 10 chr12 21974888 21975201 -122307288 + AluSg SINE Alu 1 310 0 3584 179 47 61 chr12 21975201 21975649 -122306840 + L1MC2 LINE L1 5901 6333 -11 286 200 12 24 chr12 21975664 21975749 -122306740 + L1MC4 LINE L1 5347 5430 -2378 752 287 15 48 chr12 21975809 21976143 -122306346 + L1MC4 LINE L1 5613 5935 -1873 22 56 0 0 chr12 21976625 21976661 -122305828 + AT_rich Low_complexity Low_complexity 1 36 0 274 167 39 26 chr12 21976733 21976811 -122305678 + (TA)n Simple_repeat Simple_repeat 2 80 0 438 295 48 21 chr12 21976858 21977228 -122305261 - L1MEc LINE L1 -912 1664 1492 1008 242 118 31 chr12 21977228 21977584 -122304905 + MLT1D LTR MaLR 39 425 -80 3304 145 41 3 chr12 21977824 21978410 -122304079 - L1MC1 LINE L1 0 6333 5726 2763 249 17 35 chr12 21978415 21979076 -122303413 - L1M4 LINE L1 -1796 4350 3706 2319 100 3 0 chr12 21979076 21979385 -122303104 - AluSp SINE Alu -3 310 1 2763 249 17 35 chr12 21979385 21979561 -122302928 - L1M4 LINE L1 -2440 3706 3528 3661 58 0 2 chr12 21979578 21980044 -122302445 - L1PA5 LINE L1 0 6154 5690 289 184 58 58 chr12 21980044 21980141 -122302348 + U2 snRNA snRNA 12 108 -80 1156 155 63 38 chr12 21980144 21980383 -122302106 - LTR8-int LTR ERV1 -3672 2274 2030 284 230 23 11 chr12 21980383 21980470 -122302019 - L1MC4 LINE L1 -1340 6702 6615 * 323 202 22 34 chr12 21980392 21980481 -122302008 + L1MC4 LINE L1 6616 6703 -1339 9786 157 53 65 chr12 21980559 21982680 -122299809 - LTR8-int LTR ERV1 -4161 2102 6 3904 143 11 73 chr12 21982685 21983422 -122299067 - LTR8 LTR ERV1 0 691 1 3231 275 26 30 chr12 21983425 21984775 -122297714 - L1P LINE L1 -3126 3020 1676 759 239 36 18 chr12 21985614 21985923 -122296566 - L1MCa LINE L1 -3950 2476 2280 4412 183 104 61 chr12 21985955 21986475 -122296014 - L1MCa LINE L1 -4538 1888 1392 2247 99 0 0 chr12 21986475 21986768 -122295721 - AluSg SINE Alu -17 293 1 4412 183 104 61 chr12 21986768 21987501 -122294988 - L1MCa LINE L1 -5034 1392 580 26 0 0 0 chr12 21987620 21987646 -122294843 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr12 21987781 21987804 -122294685 + AT_rich Low_complexity Low_complexity 1 23 0 5268 182 11 19 chr12 21988632 21989604 -122292885 - Tigger1 DNA MER2_type -1451 967 3 475 261 73 6 chr12 21989652 21989817 -122292672 + HAL1 LINE L1 2332 2507 0 14076 159 24 6 chr12 21989913 21991635 -122290854 + L1MA1 LINE L1 1093 2874 -4691 207 0 0 0 chr12 21991635 21991658 -122290831 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 14076 159 24 6 chr12 21991658 21992388 -122290101 + L1MA1 LINE L1 2874 3589 -3976 543 192 0 0 chr12 21992392 21992491 -122289998 - MSTA LTR MaLR -4 424 326 12533 190 21 21 chr12 21992493 21996582 -122285907 + L1MA1 LINE L1 3640 7721 0 1877 215 26 11 chr12 21996853 21997230 -122285259 - MSTB LTR MaLR -1 425 43 1993 142 19 9 chr12 21997235 21997558 -122284931 - MER61E LTR ERV1 -4 565 240 2535 52 0 10 chr12 21998709 21999017 -122283472 - AluY SINE Alu -6 305 1 358 241 84 0 chr12 21999150 21999233 -122283256 - MIR SINE MIR -78 184 95 2200 100 0 7 chr12 21999627 21999928 -122282561 + AluSq SINE Alu 1 299 -14 535 174 0 0 chr12 22002524 22002610 -122279879 + AluS SINE Alu 1 86 -227 9551 69 4 2 chr12 22002610 22003881 -122278608 - L1P LINE L1 -1611 4535 3262 357 24 0 0 chr12 22004847 22004889 -122277600 + (TG)n Simple_repeat Simple_repeat 2 43 0 210 204 0 20 chr12 22004895 22004944 -122277545 + (TA)n Simple_repeat Simple_repeat 1 48 0 832 220 20 20 chr12 22004944 22005144 -122277345 - L1M3 LINE L1 -377 5791 5592 * 2394 267 28 13 chr12 22005140 22005843 -122276646 - L1M3 LINE L1 -969 5177 4464 428 92 0 0 chr12 22005845 22005910 -122276579 - L1MA3 LINE L1 0 6305 6241 13335 166 28 56 chr12 22005911 22010647 -122271842 - L1PA11 LINE L1 -137 6273 1988 1803 171 0 3 chr12 22010647 22010939 -122271550 - AluJb SINE Alu -21 291 1 13335 166 28 56 chr12 22010939 22012856 -122269633 - L1PA11 LINE L1 -4422 1988 19 239 288 0 0 chr12 22012975 22013034 -122269455 + CT-rich Low_complexity Low_complexity 2 60 0 23 33 0 0 chr12 22015267 22015297 -122267192 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr12 22015547 22015571 -122266918 + AT_rich Low_complexity Low_complexity 1 24 0 783 309 223 14 chr12 22016175 22016758 -122265731 + L2 LINE L2 2 706 -2608 208 250 50 25 chr12 22016760 22016840 -122265649 + L2 LINE L2 2330 2411 -903 21 36 0 0 chr12 22018690 22018718 -122263771 + AT_rich Low_complexity Low_complexity 1 28 0 715 315 81 17 chr12 22018839 22019306 -122263183 - L1M3 LINE L1 -2062 4084 3588 385 299 119 40 chr12 22019365 22019760 -122262729 - L1M3 LINE L1 -2615 3531 3106 401 211 35 35 chr12 22019794 22019908 -122262581 - MLT1C LTR MaLR -301 166 53 586 214 13 0 chr12 22020331 22020654 -122261835 + (TA)n Simple_repeat Simple_repeat 1 327 0 506 278 78 67 chr12 22020654 22021514 -122260975 - L1M3 LINE L1 -3127 3019 2151 2236 232 8 23 chr12 22021667 22022192 -122260297 - LTR40a LTR ERVL -2 517 1 928 236 10 5 chr12 22022192 22022391 -122260098 - HERVL40 LTR ERVL 0 5530 5331 366 331 8 15 chr12 22022391 22022521 -122259968 + LTR40a LTR ERVL 256 384 -135 1673 35 0 0 chr12 22023861 22024062 -122258427 + L1PA4 LINE L1 5948 6148 -7 2199 105 0 3 chr12 22024414 22024709 -122257780 + AluSx SINE Alu 1 294 -18 460 331 93 23 chr12 22024783 22025085 -122257404 + L1MC/D LINE L1 4061 4383 -1763 333 0 0 0 chr12 22025143 22025180 -122257309 + (CA)n Simple_repeat Simple_repeat 2 38 0 20747 160 29 18 chr12 22025214 22026335 -122256154 + L1MA2 LINE L1 12 1118 -6606 1823 132 36 33 chr12 22026335 22026669 -122255820 - MER1B DNA MER1_type 0 337 3 20747 160 29 18 chr12 22026669 22029925 -122252564 + L1MA2 LINE L1 1118 4500 -3224 2268 109 0 3 chr12 22029925 22030229 -122252260 + AluSc SINE Alu 1 303 -6 20747 160 29 18 chr12 22030229 22033008 -122249481 + L1MA2 LINE L1 4500 7245 -479 1156 56 0 0 chr12 22033007 22033150 -122249339 + L1PA2 LINE L1 1 143 -6003 * 23884 28 0 0 chr12 22033151 22036780 -122245709 + L1PA2 LINE L1 2528 6155 0 2931 127 12 22 chr12 22036780 22036915 -122245574 + L1MA2 LINE L1 7233 7368 -355 2042 148 3 0 chr12 22036915 22037213 -122245276 + AluSx SINE Alu 1 299 -13 2931 127 12 22 chr12 22037213 22037573 -122244916 + L1MA2 LINE L1 7368 7723 0 38 98 0 0 chr12 22037573 22037695 -122244794 + AT_rich Low_complexity Low_complexity 1 122 0 252 310 8 0 chr12 22037781 22037910 -122244579 + (TA)n Simple_repeat Simple_repeat 2 131 0 375 23 0 0 chr12 22037940 22037984 -122244505 + (TG)n Simple_repeat Simple_repeat 1 44 0 582 192 14 174 chr12 22037996 22038272 -122244217 + MER21B LTR ERV1 17 248 -615 1012 221 98 96 chr12 22038363 22038739 -122243750 + MER21B LTR ERV1 439 815 -48 295 244 0 24 chr12 22038764 22038887 -122243602 + (TATG)n Simple_repeat Simple_repeat 2 121 0 263 293 53 75 chr12 22039039 22039664 -122242825 + L1MC/D LINE L1 4631 5241 -905 237 238 20 69 chr12 22039807 22039908 -122242581 + L1MC/D LINE L1 5384 5479 -865 254 258 22 67 chr12 22040423 22040512 -122241977 - MIR SINE MIR -81 181 97 285 266 0 0 chr12 22040554 22040633 -122241856 + MER116 DNA Mariner 2 80 0 22 35 0 0 chr12 22040886 22040915 -122241574 + AT_rich Low_complexity Low_complexity 1 29 0 1864 132 7 4 chr12 22041338 22041650 -122240839 - AluSx SINE Alu 0 313 1 2347 103 0 0 chr12 22041778 22042080 -122240409 + AluSg SINE Alu 1 302 -8 285 98 0 0 chr12 22042322 22042363 -122240126 + (TA)n Simple_repeat Simple_repeat 2 42 0 257 327 59 0 chr12 22043535 22043636 -122238853 + MIR SINE MIR 100 206 -56 1662 176 30 36 chr12 22044995 22045296 -122237193 - AluJo SINE Alu -11 301 3 398 329 19 19 chr12 22045483 22045641 -122236848 - MER5A DNA MER1_type -31 158 1 533 65 26 0 chr12 22045948 22046025 -122236464 + (TTTC)n Simple_repeat Simple_repeat 3 81 0 331 253 30 30 chr12 22046877 22046976 -122235513 - MER5B DNA MER1_type 0 178 80 317 133 117 0 chr12 22047808 22047868 -122234621 - MIR SINE MIR -79 183 117 570 223 14 58 chr12 22047892 22048031 -122234458 + MER5B DNA MER1_type 46 178 0 228 136 0 0 chr12 22048511 22048555 -122233934 - LTR66 LTR ERVL -173 437 394 300 207 0 46 chr12 22048555 22048642 -122233847 - L1MC4 LINE L1 -1345 6697 6615 189 171 0 0 chr12 22048646 22048681 -122233808 + (TA)n Simple_repeat Simple_repeat 1 35 0 554 201 0 15 chr12 22048704 22048838 -122233651 + (TATATG)n Simple_repeat Simple_repeat 1 132 0 240 306 124 23 chr12 22050924 22051189 -122231300 + L2 LINE L2 1793 2084 -1230 1704 163 7 23 chr12 22051311 22051612 -122230877 - AluSq SINE Alu -17 296 1 1026 120 0 0 chr12 22051612 22051745 -122230744 - AluSq/x SINE Alu -178 135 3 215 122 0 24 chr12 22051875 22051916 -122230573 + (TA)n Simple_repeat Simple_repeat 1 40 0 197 304 27 45 chr12 22053031 22053143 -122229346 - L2 LINE L2 -5 3308 3199 583 254 92 0 chr12 22053528 22053670 -122228819 - MER63A DNA MER1_type -1 209 55 2250 102 0 3 chr12 22055088 22055382 -122227107 - AluSx SINE Alu -19 293 1 286 271 125 105 chr12 22056938 22057289 -122225200 + HAL1 LINE L1 43 400 -2107 3253 267 95 38 chr12 22057425 22058893 -122223596 + HAL1 LINE L1 613 2164 -343 9458 165 76 36 chr12 22058934 22059366 -122223123 - Tigger1 DNA MER2_type -1 2417 2004 2323 65 0 7 chr12 22059366 22059658 -122222831 - AluY SINE Alu -21 290 1 9458 165 76 36 chr12 22059658 22060433 -122222056 - Tigger1 DNA MER2_type -414 2004 1261 1825 143 0 0 chr12 22060433 22060699 -122221790 + AluSx SINE Alu 35 300 -12 9458 165 76 36 chr12 22060699 22061547 -122220942 - Tigger1 DNA MER2_type -1157 1261 279 1423 179 4 48 chr12 22061553 22061821 -122220668 + AluJb SINE Alu 7 262 -50 1542 172 32 4 chr12 22061859 22062138 -122220351 - Tigger1 DNA MER2_type -2129 289 3 1897 131 7 13 chr12 22062186 22062484 -122220005 + AluSx SINE Alu 1 296 -16 1804 100 35 4 chr12 22062486 22062747 -122219742 + AluY SINE Alu 43 311 0 326 225 119 31 chr12 22062764 22062924 -122219565 + HAL1 LINE L1 2334 2507 0 436 358 83 42 chr12 22065047 22065598 -122216891 + L2 LINE L2 1711 2284 -1030 929 202 145 3 chr12 22065631 22065928 -122216561 + Charlie4a DNA MER1_type 169 507 -1 2269 78 14 3 chr12 22066879 22067173 -122215316 - AluY SINE Alu -13 298 2 970 313 68 28 chr12 22068101 22068456 -122214033 + MER70B LTR ERVL 1 369 -209 26 30 0 0 chr12 22068628 22068661 -122213828 + AT_rich Low_complexity Low_complexity 1 33 0 278 368 81 0 chr12 22068690 22068826 -122213663 + L3 LINE CR1 488 634 -943 2043 139 0 0 chr12 22069239 22069552 -122212937 - AluSx SINE Alu 0 315 3 192 77 0 0 chr12 22069645 22069671 -122212818 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 342 274 12 0 chr12 22070712 22070796 -122211693 + L2 LINE L2 3227 3311 -2 669 235 0 15 chr12 22070870 22071006 -122211483 - MLT1A1 LTR MaLR 0 365 232 4147 113 3 21 chr12 22071008 22071629 -122210860 - MER4B LTR ERV1 0 610 1 18455 110 24 9 chr12 22071629 22072032 -122210457 - MER4B-int LTR ERV1 0 6758 6363 1686 173 3 46 chr12 22072032 22072355 -122210134 + AluJb SINE Alu 3 311 -1 18455 110 24 9 chr12 22072355 22074707 -122207782 - MER4B-int LTR ERV1 -395 6363 3960 2416 115 22 3 chr12 22074707 22075064 -122207425 + THE1B LTR MaLR 1 364 0 9269 100 61 69 chr12 22075064 22076657 -122205832 + THE1B-int LTR MaLR 1 1580 0 2366 117 4 8 chr12 22076659 22077012 -122205477 + THE1B LTR MaLR 3 420 -12 11463 139 38 10 chr12 22077606 22078966 -122203523 - MER4B-int LTR ERV1 -2797 3961 2529 1739 179 20 0 chr12 22078966 22079094 -122203395 + AluJb SINE Alu 1 125 -187 207 0 0 0 chr12 22079094 22079117 -122203372 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1739 179 20 0 chr12 22079117 22079289 -122203200 + AluJb SINE Alu 125 307 -5 11463 139 38 10 chr12 22079289 22079898 -122202591 - MER4B-int LTR ERV1 -4229 2529 1938 608 197 160 21 chr12 22079898 22080086 -122202403 - MER4B-int LTR ERV1 -5123 1475 1262 314 189 0 44 chr12 22080132 22080222 -122202267 - MER4B-int LTR ERV1 -5764 834 749 2537 148 132 22 chr12 22080286 22080793 -122201696 - MER4B-int LTR ERV1 -6035 563 1 3473 148 15 26 chr12 22080796 22081411 -122201078 - MER4B LTR ERV1 0 610 3 1001 216 19 14 chr12 22081424 22081637 -122200852 - MLT1A1 LTR MaLR -146 219 6 191 313 60 0 chr12 22081681 22081748 -122200741 + L3 LINE CR1 882 952 -625 380 240 240 0 chr12 22082440 22082565 -122199924 - MIR SINE MIR -2 260 106 230 311 19 0 chr12 22084103 22084209 -122198280 + (TA)n Simple_repeat Simple_repeat 1 108 0 387 258 33 8 chr12 22084557 22084677 -122197812 - L2 LINE L2 -8 3305 3183 724 149 27 34 chr12 22085830 22085978 -122196511 - L1MB1 LINE L1 -13 6155 6009 1481 198 67 60 chr12 22086957 22087377 -122195112 + MER31B LTR ERV1 14 436 -30 273 370 49 12 chr12 22087737 22087899 -122194590 + MIR SINE MIR 95 262 0 494 331 53 7 chr12 22087899 22088050 -122194439 - L2 LINE L2 0 3272 3115 266 317 58 29 chr12 22088151 22088255 -122194234 + MIR SINE MIR 8 114 -148 357 308 60 11 chr12 22088281 22088463 -122194026 - LTR33A LTR ERVL -7 516 326 304 280 43 81 chr12 22088483 22088669 -122193820 - LTR33A LTR ERVL -344 179 1 1039 225 46 0 chr12 22089712 22089930 -122192559 - MIR SINE MIR -4 258 31 254 222 16 0 chr12 22089990 22090053 -122192436 + L1ME4a LINE L1 5952 6015 -106 22 70 0 0 chr12 22091173 22091216 -122191273 + AT_rich Low_complexity Low_complexity 1 43 0 476 253 112 76 chr12 22091563 22091840 -122190649 - L2 LINE L2 -804 2510 2224 255 235 0 94 chr12 22092070 22092155 -122190334 + MIR SINE MIR 186 262 0 23 68 0 0 chr12 22094543 22094587 -122187902 + AT_rich Low_complexity Low_complexity 1 44 0 2029 133 10 0 chr12 22096119 22096427 -122186062 + AluSx SINE Alu 1 311 -1 352 55 36 0 chr12 22096427 22096482 -122186007 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 318 294 79 89 chr12 22096651 22096867 -122185622 + L2 LINE L2 1772 1986 -1328 3097 99 25 8 chr12 22096867 22097343 -122185146 - L1MA1 LINE L1 -5 6297 5814 318 294 79 89 chr12 22097343 22097418 -122185071 + L2 LINE L2 1986 2060 -1254 1557 178 32 3 chr12 22097540 22097849 -122184640 + L1MC1 LINE L1 6011 6328 -5 455 237 67 77 chr12 22098022 22098216 -122184273 + MLT1K LTR MaLR 397 588 0 331 331 184 36 chr12 22098245 22098793 -122183696 + L2 LINE L2 2623 3272 0 560 273 173 74 chr12 22098794 22099310 -122183179 + L1ME4a LINE L1 5423 6007 -114 2405 74 3 10 chr12 22099310 22099620 -122182869 + AluSc SINE Alu 1 308 -1 560 273 173 74 chr12 22099620 22099700 -122182789 + L1ME4a LINE L1 6007 6078 -43 299 308 145 0 chr12 22099741 22099858 -122182631 - MIR SINE MIR -124 138 5 2315 90 0 7 chr12 22100252 22100562 -122181927 + AluSq SINE Alu 4 311 -2 222 150 0 0 chr12 22102228 22102268 -122180221 + (A)n Simple_repeat Simple_repeat 1 40 0 303 280 149 17 chr12 22102712 22102887 -122179602 + MIR SINE MIR 51 248 -14 21 0 0 0 chr12 22103884 22103905 -122178584 + AT_rich Low_complexity Low_complexity 1 21 0 273 286 12 0 chr12 22103944 22104028 -122178461 + L1ME1 LINE L1 5530 5614 -507 347 234 121 8 chr12 22104034 22104158 -122178331 + L1MEd LINE L1 8 145 -5974 399 294 116 25 chr12 22104346 22104784 -122177705 + L1MEd LINE L1 561 1038 -5081 388 284 157 26 chr12 22104814 22105043 -122177446 + MIR SINE MIR 4 262 0 556 294 67 91 chr12 22105046 22105773 -122176716 + L1MEd LINE L1 2093 2802 -3327 1989 184 70 12 chr12 22105862 22106275 -122176214 + MLT1C LTR MaLR 3 439 -28 187 263 105 0 chr12 22106393 22106450 -122176039 + L3 LINE CR1 1502 1564 -13 203 175 25 0 chr12 22106749 22106789 -122175700 + (GGGTG)n Simple_repeat Simple_repeat 5 45 0 21 36 0 0 chr12 22107273 22107301 -122175188 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr12 22107395 22107423 -122175066 + AT_rich Low_complexity Low_complexity 1 28 0 478 312 79 86 chr12 22107661 22108103 -122174386 + HAL1 LINE L1 114 552 -1955 351 320 13 45 chr12 22108191 22108347 -122174142 + HAL1 LINE L1 689 839 -1668 1398 60 0 0 chr12 22108351 22108518 -122173971 + AluY SINE Alu 131 297 -14 1190 236 38 40 chr12 22108533 22108906 -122173583 + L1ME1 LINE L1 5629 6000 -166 642 196 12 12 chr12 22108930 22109093 -122173396 + L1MA10 LINE L1 6163 6325 -9 40087 71 7 3 chr12 22109181 22115313 -122167176 + L1PA6 LINE L1 1 6154 0 1421 284 167 27 chr12 22115428 22116453 -122166036 + HAL1 LINE L1 972 2139 -368 664 241 41 36 chr12 22116468 22116834 -122165655 + L1MC5 LINE L1 6894 7233 -728 1558 218 71 35 chr12 22116893 22117487 -122165002 + L1MC5 LINE L1 7260 7843 -118 248 311 44 64 chr12 22117603 22117854 -122164635 + HAL1 LINE L1 2220 2465 -42 24 53 0 0 chr12 22117869 22117907 -122164582 + AT_rich Low_complexity Low_complexity 1 38 0 306 335 124 10 chr12 22117978 22118172 -122164317 + L2 LINE L2 2458 2673 -641 421 272 77 2 chr12 22118182 22118343 -122164146 + MIR SINE MIR 33 203 -45 449 248 20 0 chr12 22118439 22118540 -122163949 - MER5A DNA MER1_type -77 112 10 464 300 62 0 chr12 22118897 22119057 -122163432 + MIR SINE MIR 66 235 -27 2110 35 0 0 chr12 22119084 22119338 -122163151 - L1PA4 LINE L1 0 6155 5902 207 375 31 10 chr12 22119488 22119584 -122162905 + MIR SINE MIR 24 121 -87 2534 154 25 25 chr12 22119609 22120095 -122162394 - MER66B LTR ERV1 0 486 1 2183 113 3 3 chr12 22120480 22120789 -122161700 + AluSp SINE Alu 5 313 0 264 318 0 0 chr12 22121076 22121142 -122161347 + L2 LINE L2 3225 3290 -23 1528 182 27 24 chr12 22123548 22123575 -122158914 - AluJo SINE Alu -12 300 275 210 37 0 0 chr12 22123575 22123602 -122158887 + (TC)n Simple_repeat Simple_repeat 2 28 0 1528 182 27 24 chr12 22123602 22123871 -122158618 - AluJo SINE Alu -37 275 3 1770 187 12 0 chr12 22126154 22126497 -122155992 - L1MB1 LINE L1 -1 6167 5821 23 0 0 0 chr12 22126650 22126673 -122155816 + AT_rich Low_complexity Low_complexity 1 23 0 2336 82 3 0 chr12 22127552 22127846 -122154643 + AluSg SINE Alu 3 297 -13 1577 137 3 109 chr12 22129562 22129883 -122152606 + MER50 LTR ERV1 1 287 -447 5539 147 3 6 chr12 22129883 22130271 -122152218 + L1PB3 LINE L1 5104 5492 -662 2224 107 3 3 chr12 22130271 22130580 -122151909 + AluSc SINE Alu 1 309 0 5539 147 3 6 chr12 22130580 22131245 -122151244 + L1PB3 LINE L1 5492 6154 0 2138 107 7 0 chr12 22131279 22131578 -122150911 + AluSg SINE Alu 9 309 -1 242 357 54 30 chr12 22131585 22131689 -122150800 - MIR SINE MIR -97 111 17 263 329 98 30 chr12 22132508 22132672 -122149817 + L2 LINE L2 3094 3268 -4 27 0 0 0 chr12 22132696 22132723 -122149766 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr12 22133468 22133505 -122148984 + AT_rich Low_complexity Low_complexity 1 37 0 2382 79 0 0 chr12 22133515 22133820 -122148669 - AluY SINE Alu -6 305 1 270 333 91 38 chr12 22134979 22135111 -122147378 + MIR SINE MIR 88 226 -36 2427 125 6 3 chr12 22135111 22135470 -122147019 + THE1B LTR MaLR 1 360 -4 10131 109 37 37 chr12 22135474 22137054 -122145435 + THE1B-int LTR MaLR 1 1580 0 2346 118 28 3 chr12 22137054 22137409 -122145080 + THE1B LTR MaLR 1 364 0 215 121 61 45 chr12 22138638 22138704 -122143785 + (TTATA)n Simple_repeat Simple_repeat 4 70 0 282 106 0 21 chr12 22138720 22138767 -122143722 + MADE1 DNA Mariner 35 80 0 671 271 19 67 chr12 22141498 22141767 -122140722 + Charlie2 DNA MER1_type 7 262 -2520 2165 222 86 27 chr12 22142054 22142787 -122139702 + Charlie2b DNA MER1_type 1333 2108 -674 1595 158 54 14 chr12 22143027 22143122 -122139367 + AluJb SINE Alu 23 113 -199 225 0 0 0 chr12 22143122 22143147 -122139342 + (CA)n Simple_repeat Simple_repeat 2 26 0 1595 158 54 14 chr12 22143147 22143304 -122139185 + AluJb SINE Alu 113 289 -23 276 30 0 0 chr12 22143304 22143337 -122139152 + (CA)n Simple_repeat Simple_repeat 2 34 0 1595 158 54 14 chr12 22143337 22143362 -122139127 + AluJb SINE Alu 289 312 0 42589 35 21 1 chr12 22143765 22149795 -122132694 + L1PA2 LINE L1 1 6154 -1 659 299 64 47 chr12 22149804 22150334 -122132155 + L1MC/D LINE L1 4068 4618 -1528 219 224 12 24 chr12 22150335 22150420 -122132069 + T-rich Low_complexity Low_complexity 2 85 0 425 287 98 68 chr12 22150681 22151283 -122131206 + L1MC/D LINE L1 4881 5495 -768 207 0 0 0 chr12 22152467 22152490 -122129999 + (T)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr12 22152983 22153006 -122129483 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 6221 106 26 1 chr12 22153009 22154140 -122128349 - L1PA10 LINE L1 -23 6145 4994 2253 118 52 30 chr12 22154130 22154535 -122127954 + L1PA10 LINE L1 4598 5011 -1135 * 295 233 146 0 chr12 22154602 22154705 -122127784 + MIR SINE MIR 60 177 -85 440 285 49 14 chr12 22154715 22154859 -122127630 - L2 LINE L2 -5 3308 3160 291 104 0 0 chr12 22154914 22154962 -122127527 + (TG)n Simple_repeat Simple_repeat 1 48 0 677 261 143 9 chr12 22155291 22155521 -122126968 - MIR SINE MIR 0 262 2 776 296 110 49 chr12 22155828 22156274 -122126215 - L2 LINE L2 -144 3169 2667 1818 148 16 35 chr12 22156274 22156592 -122125897 + AluJb SINE Alu 1 312 0 776 296 110 49 chr12 22156592 22156768 -122125721 - L2 LINE L2 -646 2667 2503 333 68 0 0 chr12 22157466 22157510 -122124979 + (TG)n Simple_repeat Simple_repeat 1 44 0 694 240 6 34 chr12 22158093 22158272 -122124217 + MER58A DNA MER1_type 12 185 -39 22 0 0 0 chr12 22158273 22158295 -122124194 + AT_rich Low_complexity Low_complexity 1 22 0 748 273 103 75 chr12 22159187 22160443 -122122046 - L1ME3 LINE L1 -306 5925 4617 1628 147 75 18 chr12 22160443 22160722 -122121767 - AluJb SINE Alu -17 295 1 748 273 103 75 chr12 22160722 22160788 -122121701 - L1ME3 LINE L1 -1614 4617 4554 2273 96 3 0 chr12 22160856 22161147 -122121342 + AluSx SINE Alu 3 294 -18 21 36 0 0 chr12 22161834 22161862 -122120627 + AT_rich Low_complexity Low_complexity 1 28 0 1905 121 0 11 chr12 22161982 22162263 -122120226 - AluSx SINE Alu 0 312 35 744 258 22 13 chr12 22162764 22162993 -122119496 + PABL_B LTR ERV1 437 667 0 251 175 0 0 chr12 22162993 22163033 -122119456 - AluSx SINE Alu -262 40 1 246 211 0 0 chr12 22163050 22163102 -122119387 - L1ME3 LINE L1 -3106 3109 3058 414 301 82 50 chr12 22163105 22163800 -122118689 - L1ME3 LINE L1 -3182 3033 2317 328 320 58 13 chr12 22163816 22163972 -122118517 - L1ME3 LINE L1 -4084 2312 2150 320 335 63 37 chr12 22164242 22164591 -122117898 - HAL1 LINE L1 -849 1658 1301 378 323 78 22 chr12 22164597 22164829 -122117660 - L1ME3 LINE L1 -5011 1194 950 21 57 0 0 chr12 22164845 22164880 -122117609 + AT_rich Low_complexity Low_complexity 1 35 0 270 0 0 0 chr12 22165112 22165142 -122117347 + (CA)n Simple_repeat Simple_repeat 1 30 0 581 198 0 0 chr12 22165368 22165469 -122117020 - 7SLRNA srpRNA srpRNA -9 311 211 423 264 107 30 chr12 22165506 22165703 -122116786 + HAL1 LINE L1 1712 1923 -584 856 266 58 54 chr12 22165880 22166365 -122116124 + HAL1 LINE L1 1978 2464 -43 25 65 0 0 chr12 22166382 22166428 -122116061 + AT_rich Low_complexity Low_complexity 1 46 0 2074 133 42 33 chr12 22167156 22167517 -122114972 - THE1B LTR MaLR 0 364 1 663 235 46 7 chr12 22167578 22167731 -122114758 + MER58 DNA MER1_type 1 159 -2261 545 215 0 9 chr12 22167735 22167842 -122114647 + L1MDa LINE L1 21 126 -6414 458 216 93 0 chr12 22167852 22167949 -122114540 + L1MDa LINE L1 250 355 -6185 42757 34 22 1 chr12 22167971 22173990 -122108499 + L1PA2 LINE L1 11 6155 0 908 286 33 94 chr12 22173992 22174447 -122108042 + L2 LINE L2 2058 2484 -830 314 291 8 34 chr12 22174647 22174764 -122107725 - MER94 DNA DNA -19 115 2 630 291 189 25 chr12 22174767 22175452 -122107037 + L2 LINE L2 2507 3313 0 23 0 0 0 chr12 22175937 22175960 -122106529 + AT_rich Low_complexity Low_complexity 1 23 0 739 249 79 84 chr12 22176330 22176784 -122105705 - MLT1J LTR MaLR -49 462 11 1779 181 3 19 chr12 22177969 22178278 -122104211 - AluJo SINE Alu -8 304 1 1535 185 57 26 chr12 22178816 22179149 -122103340 + LTR52 LTR ERVL 1 349 -72 351 44 0 0 chr12 22179149 22179194 -122103295 + (TG)n Simple_repeat Simple_repeat 1 45 0 1535 185 57 26 chr12 22179194 22179244 -122103245 + LTR52 LTR ERVL 349 396 -25 186 393 24 0 chr12 22179456 22179540 -122102949 - L2 LINE L2 -8 3305 3220 1867 171 0 3 chr12 22179743 22180048 -122102441 - AluJb SINE Alu -8 304 1 217 394 87 0 chr12 22180113 22180240 -122102249 - L2 LINE L2 -581 2733 2596 3407 169 83 74 chr12 22181067 22181583 -122100906 + MER63C DNA MER1_type 7 536 -524 3337 62 16 5 chr12 22181583 22182031 -122100458 - L1PA12 LINE L1 0 6168 5716 3407 169 83 74 chr12 22182031 22182430 -122100059 + MER63C DNA MER1_type 536 930 0 746 186 150 0 chr12 22182703 22182870 -122099619 + LTR47A LTR ERVL 261 452 0 182 316 53 21 chr12 22183323 22183418 -122099071 - L2 LINE L2 -1033 2281 2184 561 301 68 9 chr12 22183478 22183697 -122098792 - MIR SINE MIR -25 237 6 216 322 126 82 chr12 22184878 22185220 -122097269 - L2 LINE L2 -52 3220 2864 205 221 15 59 chr12 22185967 22186035 -122096454 + MIR3 SINE MIR 120 184 -24 2018 117 16 10 chr12 22186885 22187194 -122095295 - AluSx SINE Alu -1 311 1 221 298 175 9 chr12 22187563 22187677 -122094812 - L2 LINE L2 -1 3271 3139 183 303 49 56 chr12 22188168 22188242 -122094247 - L2 LINE L2 -1317 1997 1924 770 181 0 23 chr12 22188242 22188375 -122094114 + FLAM_C SINE Alu 2 131 -2 183 303 49 56 chr12 22188375 22188462 -122094027 - L2 LINE L2 -1390 1924 1837 484 98 31 0 chr12 22189300 22189387 -122093102 - L1MA8 LINE L1 -23 6289 6186 2056 160 33 13 chr12 22189387 22189781 -122092708 - L1 LINE L1 -1961 4185 3784 2274 86 0 3 chr12 22189788 22190078 -122092411 - AluY SINE Alu -22 289 1 1127 280 115 20 chr12 22190078 22190992 -122091497 - L1M2c LINE L1 -4557 2541 1534 380 368 6 23 chr12 22191660 22191834 -122090655 - L1M2c LINE L1 -5968 1130 960 253 296 59 7 chr12 22192258 22192410 -122090079 - Charlie7 DNA MER1_type -1 2611 2452 202 267 199 30 chr12 22192865 22192996 -122089493 + MIR SINE MIR 46 198 -64 189 302 0 38 chr12 22193056 22193109 -122089380 - L2 LINE L2 -19 3294 3244 301 277 75 0 chr12 22193295 22193389 -122089100 - MIR SINE MIR -2 260 160 361 117 0 17 chr12 22193389 22193449 -122089040 + Charlie1 DNA MER1_type 2700 2758 -3 376 307 187 4 chr12 22193451 22193692 -122088797 - L2 LINE L2 -2032 1282 998 255 386 111 36 chr12 22194447 22194861 -122087628 - L2 LINE L2 -16 3256 2812 2375 61 3 7 chr12 22194898 22195195 -122087294 + AluY SINE Alu 1 296 -15 1770 151 0 14 chr12 22195397 22195675 -122086814 + AluJo SINE Alu 14 287 -25 23 0 0 0 chr12 22195677 22195700 -122086789 + AT_rich Low_complexity Low_complexity 1 23 0 2272 65 21 10 chr12 22196461 22196751 -122085738 + AluY SINE Alu 2 294 -17 23 0 0 0 chr12 22197616 22197639 -122084850 + AT_rich Low_complexity Low_complexity 1 23 0 2391 63 3 38 chr12 22198605 22198923 -122083566 - AluY SINE Alu -4 307 1 502 284 56 35 chr12 22199562 22199759 -122082730 - MIR SINE MIR -42 220 20 853 28 9 0 chr12 22200008 22200115 -122082374 - L1PA5 LINE L1 -11 6143 6036 665 242 135 6 chr12 22200253 22200431 -122082058 - MIR SINE MIR -54 208 8 33 66 0 0 chr12 22200915 22200976 -122081513 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr12 22201121 22201144 -122081345 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr12 22201200 22201243 -122081246 + AT_rich Low_complexity Low_complexity 1 43 0 245 194 48 48 chr12 22201301 22201363 -122081126 + Charlie8 DNA MER1_type 1356 1417 -1000 23 54 0 0 chr12 22201935 22201972 -122080517 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr12 22204119 22204141 -122078348 + AT_rich Low_complexity Low_complexity 1 22 0 200 86 29 0 chr12 22204199 22204234 -122078255 + (TA)n Simple_repeat Simple_repeat 1 36 0 27 0 0 0 chr12 22204446 22204473 -122078016 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr12 22204717 22204739 -122077750 + AT_rich Low_complexity Low_complexity 1 22 0 14097 127 57 10 chr12 22205101 22206267 -122076222 - Tigger1 DNA MER2_type 0 2418 1308 2169 126 105 10 chr12 22206267 22206656 -122075833 - MSTA LTR MaLR 0 428 3 14097 127 57 10 chr12 22206656 22207788 -122074701 - Tigger1 DNA MER2_type -1110 1308 12 3983 204 64 11 chr12 22207799 22208583 -122073906 + MER21B LTR ERV1 38 862 -1 248 314 12 23 chr12 22209021 22209107 -122073382 - L2 LINE L2 -5 3308 3224 2113 93 4 7 chr12 22209152 22209476 -122073013 - AluSx SINE Alu 0 327 5 191 355 45 18 chr12 22210180 22210290 -122072199 - MIR SINE MIR -78 130 18 22 0 0 0 chr12 22211744 22211766 -122070723 + AT_rich Low_complexity Low_complexity 1 22 0 717 186 137 0 chr12 22211877 22212060 -122070429 + MER3 DNA MER1_type 1 208 -1 2220 110 0 10 chr12 22212164 22212465 -122070024 + AluSq SINE Alu 3 300 -13 304 349 46 0 chr12 22213320 22213429 -122069060 - MIR SINE MIR -48 214 101 12064 31 31 0 chr12 22213482 22215645 -122066844 - L1PA5 LINE L1 0 6154 3918 1534 95 40 5 chr12 22218022 22218244 -122064245 - MER30 DNA MER1_type 0 230 1 1016 74 74 7 chr12 22218404 22218553 -122063936 - MER30 DNA MER1_type -71 159 1 21 36 0 0 chr12 22219674 22219702 -122062787 + AT_rich Low_complexity Low_complexity 1 28 0 1128 162 118 90 chr12 22221051 22221397 -122061092 - MER41B LTR ERV1 -20 615 260 373 224 35 24 chr12 22221894 22221979 -122060510 + MER7A DNA MER2_type 1 84 -262 278 136 45 0 chr12 22221976 22222020 -122060469 - Alu SINE Alu -11 290 245 * 1547 130 88 4 chr12 22222008 22222269 -122060220 + MER7A DNA MER2_type 66 346 0 498 174 68 45 chr12 22222482 22222614 -122059875 - MLT1D LTR MaLR 0 505 371 639 151 38 88 chr12 22222620 22222779 -122059710 - MLT1E2 LTR MaLR -475 151 1 408 273 30 36 chr12 22224937 22225102 -122057387 + MER103 DNA DNA 3 166 0 376 281 151 50 chr12 22227222 22227421 -122055068 - L2 LINE L2 -189 3083 2865 2250 247 81 5 chr12 22227423 22228006 -122054483 + MLT2E LTR ERVL 1 627 -1 2375 96 0 0 chr12 22228106 22228408 -122054081 - AluSx SINE Alu -10 302 1 376 279 60 60 chr12 22228674 22228857 -122053632 - L2 LINE L2 -3 3310 3128 768 304 109 15 chr12 22228867 22229262 -122053227 - L2 LINE L2 -424 2890 2459 345 225 121 47 chr12 22229285 22229591 -122052898 + LTR50 LTR ERVL 27 410 -385 804 214 134 0 chr12 22229595 22229833 -122052656 + LTR50 LTR ERVL 524 793 -2 29 28 0 0 chr12 22230365 22230401 -122052088 + AT_rich Low_complexity Low_complexity 1 36 0 395 216 0 0 chr12 22231950 22232024 -122050465 + Tigger4(Zombi) DNA MER2_type 2658 2731 0 23 33 0 0 chr12 22232699 22232729 -122049760 + AT_rich Low_complexity Low_complexity 1 30 0 1562 190 103 150 chr12 22233310 22234038 -122048451 + L1MC5 LINE L1 6728 7376 -585 387 91 30 0 chr12 22234038 22234104 -122048385 + L1PA10 LINE L1 6101 6168 0 1562 190 103 150 chr12 22234104 22234609 -122047880 + L1MC5 LINE L1 7376 7903 -58 1646 190 34 0 chr12 22234801 22235127 -122047362 - MER58B DNA MER1_type -4 337 1 2248 115 3 10 chr12 22235414 22235728 -122046761 - AluSx SINE Alu 0 312 1 1092 255 37 12 chr12 22236432 22236751 -122045738 + MLT1A1 LTR MaLR 33 365 0 1244 327 88 17 chr12 22236766 22237515 -122044974 + L2 LINE L2 1746 2547 -767 227 306 28 0 chr12 22237519 22237591 -122044898 + L2 LINE L2 2681 2754 -560 302 319 92 21 chr12 22237698 22237839 -122044650 + L2 LINE L2 2914 3064 -208 884 202 22 0 chr12 22237946 22238129 -122044360 + MER58A DNA MER1_type 37 223 -1 387 236 260 0 chr12 22238137 22238264 -122044225 + MER5A DNA MER1_type 24 183 -6 374 293 111 10 chr12 22238273 22238372 -122044117 + L2 LINE L2 3150 3258 -14 523 109 11 0 chr12 22238457 22238549 -122043940 + L1MA5 LINE L1 6064 6156 -144 989 131 12 0 chr12 22238628 22238788 -122043701 + L1PA16 LINE L1 6000 6161 -5 27 62 0 0 chr12 22238853 22238901 -122043588 + AT_rich Low_complexity Low_complexity 1 48 0 1697 176 0 30 chr12 22239323 22239624 -122042865 + AluJo SINE Alu 6 297 -15 478 300 74 16 chr12 22240583 22240826 -122041663 + MIR SINE MIR 3 259 -3 1166 261 133 24 chr12 22241319 22241866 -122040623 + MLT2F LTR ERVL 57 663 0 307 316 38 15 chr12 22241879 22242012 -122040477 + ERVL-F LTR ERVL 24 159 -5605 658 317 33 7 chr12 22242193 22242464 -122040025 + ERVL-F LTR ERVL 403 680 -5084 6234 276 86 62 chr12 22242520 22242684 -122039805 + ERVL-F LTR ERVL 834 993 -4771 2417 165 21 5 chr12 22242684 22243103 -122039386 - MSTB LTR MaLR 0 426 1 6234 276 86 62 chr12 22243103 22244070 -122038419 + ERVL-F LTR ERVL 993 1936 -3828 2488 66 7 0 chr12 22244070 22244375 -122038114 + AluY SINE Alu 1 307 -4 6234 276 86 62 chr12 22244375 22247668 -122034821 + ERVL-F LTR ERVL 1936 5403 -361 274 231 104 104 chr12 22247761 22247895 -122034594 + ERVL-F LTR ERVL 5568 5701 -63 1394 192 31 3 chr12 22247909 22248200 -122034289 + L1MB4 LINE L1 5882 6180 0 192 290 70 80 chr12 22248723 22248823 -122033666 + MIR SINE MIR 55 153 -55 250 286 89 18 chr12 22249414 22249526 -122032963 + L2 LINE L2 3143 3262 -10 239 295 139 36 chr12 22251987 22252153 -122030336 - MIR SINE MIR -52 210 28 24 32 0 0 chr12 22252922 22252953 -122029536 + AT_rich Low_complexity Low_complexity 1 31 0 551 300 75 25 chr12 22253723 22253963 -122028526 + MIR SINE MIR 4 255 -7 273 306 0 0 chr12 22254798 22254870 -122027619 + L2 LINE L2 3189 3260 -12 25 31 0 0 chr12 22255737 22255769 -122026720 + AT_rich Low_complexity Low_complexity 1 32 0 233 265 0 0 chr12 22256266 22256315 -122026174 + (TA)n Simple_repeat Simple_repeat 2 50 0 342 67 0 0 chr12 22257633 22257678 -122024811 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 2411 91 7 0 chr12 22257872 22258180 -122024309 + AluSx SINE Alu 1 310 -2 199 328 66 62 chr12 22258217 22258473 -122024016 - L2 LINE L2 -2 3311 3055 4137 176 45 16 chr12 22259656 22260473 -122022016 - MER21B LTR ERV1 -21 842 2 1873 139 33 26 chr12 22261546 22261848 -122020641 + AluJb SINE Alu 1 304 -8 207 357 45 0 chr12 22261870 22261982 -122020507 + MIR SINE MIR 32 148 -60 587 129 0 0 chr12 22262283 22262368 -122020121 - AluJ/FLAM SINE Alu -227 85 1 731 272 6 0 chr12 22262406 22262579 -122019910 + FRAM SINE Alu 1 174 -2 341 274 44 35 chr12 22262594 22262707 -122019782 + L2 LINE L2 3185 3298 -15 25 31 0 0 chr12 22263826 22263858 -122018631 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr12 22264080 22264110 -122018379 + AT_rich Low_complexity Low_complexity 1 30 0 218 358 25 25 chr12 22267189 22267270 -122015219 - L2 LINE L2 -6 3266 3186 216 208 62 0 chr12 22268388 22268436 -122014053 + L2 LINE L2 3221 3271 -1 2188 109 26 0 chr12 22268482 22268786 -122013703 - AluSq SINE Alu -1 312 1 627 215 171 25 chr12 22271666 22271824 -122010665 + MER5A DNA MER1_type 9 189 0 1635 181 51 25 chr12 22271842 22272196 -122010293 + MLT1A1 LTR MaLR 1 363 -2 315 250 39 0 chr12 22272308 22272412 -122010077 + L2 LINE L2 1564 1671 -1643 252 141 0 90 chr12 22272427 22272505 -122009984 - LTR67 LTR ERVL -14 543 473 298 286 0 0 chr12 22272654 22272731 -122009758 - LTR67 LTR ERVL -380 177 101 562 211 0 0 chr12 22272904 22273008 -122009481 + FLAM_C SINE Alu 18 121 -22 739 309 129 67 chr12 22273051 22273860 -122008629 + L2 LINE L2 1750 2608 -706 228 373 31 12 chr12 22273872 22274033 -122008456 + L2 LINE L2 2805 2968 -346 1271 195 39 12 chr12 22274187 22274444 -122008045 + Tigger7 DNA MER2_type 1 264 -469 328 177 25 25 chr12 22274445 22274524 -122007965 + Tigger7 DNA MER2_type 2390 2468 -19 397 306 25 38 chr12 22274562 22274722 -122007767 + L2 LINE L2 3156 3313 0 306 293 159 71 chr12 22276407 22276898 -122005591 - L1M2 LINE L1 -5847 1002 469 348 279 18 27 chr12 22277927 22278038 -122004451 - MER5A DNA MER1_type -56 133 24 209 332 146 32 chr12 22278031 22278251 -122004238 - L2 LINE L2 -1055 2259 2015 * 21 36 0 0 chr12 22278832 22278860 -122003629 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr12 22279064 22279089 -122003400 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 198 191 0 0 chr12 22280891 22280933 -122001556 + (CA)n Simple_repeat Simple_repeat 2 43 0 196 298 0 18 chr12 22282264 22282321 -122000168 - MIR SINE MIR -66 196 141 2027 125 15 21 chr12 22282515 22282843 -121999646 - MLT1A1 LTR MaLR 0 365 40 407 183 14 0 chr12 22282843 22282914 -121999575 + Tigger5 DNA MER2_type 1 72 -2251 275 246 0 0 chr12 22282919 22282976 -121999513 - Tigger5 DNA MER2_type -6 2317 2261 1854 171 3 19 chr12 22282984 22283415 -121999074 + AluSx SINE Alu 1 426 0 274 182 0 0 chr12 22283421 22283465 -121999024 + Tigger5 DNA MER2_type 2279 2322 -1 286 95 0 0 chr12 22283465 22283507 -121998982 - MLT1A1 LTR MaLR -323 42 1 211 259 0 52 chr12 22283640 22283698 -121998791 - L2 LINE L2 -11 3261 3207 536 296 100 12 chr12 22286108 22286348 -121996141 - MIR SINE MIR 0 262 2 211 250 0 0 chr12 22286832 22286876 -121995613 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 360 368 32 7 chr12 22287589 22287744 -121994745 - L3 LINE CR1 -26 1551 1393 195 232 74 74 chr12 22288459 22288554 -121993935 + MIR SINE MIR 87 181 -81 290 274 36 0 chr12 22289608 22289692 -121992797 + MER5B DNA MER1_type 88 174 -4 1986 140 16 3 chr12 22289745 22290053 -121992436 + AluJb SINE Alu 1 312 0 222 118 0 0 chr12 22290206 22290240 -121992249 + (TAA)n Simple_repeat Simple_repeat 2 35 0 2133 145 3 3 chr12 22290453 22290797 -121991692 - L1PA16 LINE L1 -2 6164 5821 1967 128 7 14 chr12 22290808 22291105 -121991384 - AluSx SINE Alu -17 295 1 927 238 21 21 chr12 22291445 22291685 -121990804 - MIR SINE MIR -21 241 2 2359 45 10 16 chr12 22292330 22292638 -121989851 - L1PA8 LINE L1 -2 6170 5865 2148 130 3 0 chr12 22293916 22294215 -121988274 + AluSx SINE Alu 1 300 -12 198 0 0 0 chr12 22294449 22294471 -121988018 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 27 73 0 0 chr12 22294650 22294705 -121987784 + AT_rich Low_complexity Low_complexity 1 55 0 699 265 93 0 chr12 22295733 22295937 -121986552 + L2 LINE L2 2579 2801 -513 1346 225 52 34 chr12 22295937 22296075 -121986414 + MER63C DNA MER1_type 1 135 -926 3707 144 31 0 chr12 22296075 22296694 -121985795 + L1MC1 LINE L1 5694 6331 -2 1346 225 52 34 chr12 22296694 22297405 -121985084 + MER63C DNA MER1_type 135 926 -5 443 77 15 0 chr12 22297434 22297499 -121984990 + L1MC1 LINE L1 6267 6332 -1 259 211 0 0 chr12 22297504 22297561 -121984928 + MER63 DNA MER1_type 137 193 -868 872 197 14 28 chr12 22297649 22297862 -121984627 - MER63 DNA MER1_type -297 763 554 1714 252 36 4 chr12 22298149 22299066 -121983423 - L1MC4 LINE L1 -221 7821 6712 360 0 0 0 chr12 22299070 22299110 -121983379 + (CA)n Simple_repeat Simple_repeat 2 41 0 2075 115 3 3 chr12 22299416 22299704 -121982785 + AluSx SINE Alu 1 288 -24 1201 26 0 0 chr12 22299842 22299994 -121982495 - L1PA3 LINE L1 -92 6063 5912 190 351 0 0 chr12 22300823 22300897 -121981592 + MIR SINE MIR 168 241 -21 236 397 11 39 chr12 22301475 22301654 -121980835 + L2 LINE L2 2909 3082 -190 484 248 124 51 chr12 22301738 22301800 -121980689 - MIR SINE MIR -6 256 200 962 182 0 0 chr12 22301800 22301954 -121980535 - FRAM SINE Alu -12 154 1 484 248 124 51 chr12 22301954 22302134 -121980355 - MIR SINE MIR -62 200 5 188 67 33 0 chr12 22302526 22302556 -121979933 + (CA)n Simple_repeat Simple_repeat 2 32 0 848 158 6 0 chr12 22302846 22303017 -121979472 + GA-rich Low_complexity Low_complexity 4 175 0 650 276 43 5 chr12 22303022 22303232 -121979257 + LTR16B LTR ERVL 240 457 -7 2062 181 76 9 chr12 22304208 22304640 -121977849 + LOR1b LTR ERV1 1 461 0 1774 155 33 13 chr12 22304908 22305211 -121977278 - AluJb SINE Alu -3 309 1 306 372 50 21 chr12 22305295 22305537 -121976952 + L2 LINE L2 2261 2509 -805 292 312 43 32 chr12 22305966 22306059 -121976430 + L2 LINE L2 3159 3252 -20 2276 96 0 3 chr12 22306358 22306650 -121975839 + AluSg SINE Alu 1 291 -19 3693 141 30 64 chr12 22306650 22307452 -121975037 + Ricksha_b DNA DNA 293 1067 -187 790 152 89 11 chr12 22307510 22307701 -121974788 + Ricksha_b DNA DNA 1433 1638 -8 26 50 0 0 chr12 22309589 22309629 -121972860 + AT_rich Low_complexity Low_complexity 1 40 0 24 53 0 0 chr12 22310000 22310038 -121972451 + AT_rich Low_complexity Low_complexity 1 38 0 241 321 9 0 chr12 22310740 22310849 -121971640 + L1MC5 LINE L1 7784 7893 -68 29 28 0 0 chr12 22311420 22311456 -121971033 + AT_rich Low_complexity Low_complexity 1 36 0 317 363 117 0 chr12 22311842 22312013 -121970476 - MIR SINE MIR -20 242 52 189 0 0 0 chr12 22313458 22313479 -121969010 + (A)n Simple_repeat Simple_repeat 1 21 0 180 0 0 0 chr12 22314302 22314322 -121968167 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr12 22315066 22315088 -121967401 + AT_rich Low_complexity Low_complexity 1 22 0 652 285 92 4 chr12 22315240 22315468 -121967021 - MIR SINE MIR -12 250 3 1679 106 0 0 chr12 22315833 22316050 -121966439 + AluSg/x SINE Alu 85 301 -11 21 36 0 0 chr12 22316218 22316246 -121966243 + GC_rich Low_complexity Low_complexity 1 28 0 303 246 30 52 chr12 22316339 22316473 -121966016 + C-rich Low_complexity Low_complexity 2 132 0 2381 88 0 0 chr12 22317029 22317326 -121965163 - AluSg1 SINE Alu -12 297 1 210 365 157 18 chr12 22317707 22318216 -121964273 + L2 LINE L2 1589 2168 -1146 597 284 62 58 chr12 22318252 22318509 -121963980 + MIR SINE MIR 5 262 0 21 36 0 0 chr12 22319137 22319165 -121963324 + AT_rich Low_complexity Low_complexity 1 28 0 192 271 0 21 chr12 22320159 22320207 -121962282 - L2 LINE L2 -2 3270 3224 481 278 96 37 chr12 22321320 22321507 -121960982 - MIR SINE MIR -28 234 37 272 369 56 34 chr12 22322169 22322402 -121960087 - L2 LINE L2 -391 2923 2686 * 390 287 23 8 chr12 22322397 22322526 -121959963 + MIR SINE MIR 132 262 0 376 256 186 0 chr12 22322789 22322988 -121959501 - L1MCc LINE L1 -4900 1523 1288 2166 110 0 3 chr12 22323204 22323513 -121958976 + AluSc SINE Alu 1 308 -1 264 333 19 9 chr12 22324778 22324886 -121957603 - MIR3 SINE MIR -3 205 97 23 33 0 0 chr12 22326165 22326195 -121956294 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr12 22326247 22326282 -121956207 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 22326594 22326615 -121955874 + AT_rich Low_complexity Low_complexity 1 21 0 301 248 16 27 chr12 22326988 22327079 -121955410 - MER5A DNA MER1_type 0 189 92 21 0 0 0 chr12 22328481 22328502 -121953987 + AT_rich Low_complexity Low_complexity 1 21 0 182 138 0 0 chr12 22328816 22328845 -121953644 - L2 LINE L2 -16 3297 3269 214 354 133 54 chr12 22329437 22330704 -121951785 + L2 LINE L2 665 2032 -1282 1741 204 112 7 chr12 22330706 22330866 -121951623 - MLT1D LTR MaLR -9 496 354 2217 123 0 22 chr12 22330866 22331183 -121951306 - AluSq SINE Alu -3 310 1 1741 204 112 7 chr12 22331183 22331449 -121951040 - MLT1D LTR MaLR -151 354 25 257 312 199 16 chr12 22331593 22331779 -121950710 + L2 LINE L2 2197 2416 -898 1122 217 112 43 chr12 22332704 22333124 -121949365 + LTR2 LTR ERV1 1 449 0 194 329 13 0 chr12 22333339 22333418 -121949071 + MIR SINE MIR 92 171 -91 745 229 50 0 chr12 22333454 22333694 -121948795 + L1PB4 LINE L1 5073 5324 -822 2743 113 12 0 chr12 22333696 22334103 -121948386 + MLT2A2 LTR ERVL 1 412 -41 205 178 0 0 chr12 22334104 22334149 -121948340 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 257 115 77 0 chr12 22334152 22334204 -121948285 + MLT2A2 LTR ERVL 465 520 0 2611 71 0 0 chr12 22334204 22334557 -121947932 + HERVL-A2 LTR ERVL 1 353 -5301 * 19901 76 23 7 chr12 22334551 22337531 -121944958 + HERVL-A2 LTR ERVL 2629 5654 0 3326 86 11 11 chr12 22337531 22337943 -121944546 + MLT2A2 LTR ERVL 1 415 -38 405 0 0 0 chr12 22337943 22337988 -121944501 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 3326 86 11 11 chr12 22337988 22338028 -121944461 + MLT2A2 LTR ERVL 414 453 0 4640 153 6 25 chr12 22338028 22338849 -121943640 + L1PB4 LINE L1 5322 6128 -28 2616 113 11 3 chr12 22338849 22339221 -121943268 + THE1C LTR MaLR 1 375 0 4640 153 6 25 chr12 22339221 22339246 -121943243 + L1PB4 LINE L1 6128 6152 -4 23 0 0 0 chr12 22339246 22339269 -121943220 + AT_rich Low_complexity Low_complexity 1 23 0 14225 193 28 22 chr12 22340969 22346598 -121935891 + L1M2 LINE L1 2 5660 -1188 451 131 36 48 chr12 22346602 22346686 -121935803 + MSTB LTR MaLR 1 83 -343 1308 271 8 0 chr12 22346686 22347051 -121935438 + L1MA4A LINE L1 22 389 -6474 2368 166 45 4 chr12 22347083 22347593 -121934896 + L1MA4A LINE L1 2846 3477 -3385 4408 215 6 1 chr12 22347595 22348536 -121933953 + L1MA4A LINE L1 4173 5118 -1744 6031 145 28 9 chr12 22348548 22349872 -121932617 + L1MA4A LINE L1 5674 7016 -3 362 106 0 15 chr12 22350571 22350637 -121931852 + (TC)n Simple_repeat Simple_repeat 2 66 0 191 167 24 0 chr12 22350636 22350678 -121931811 + (TA)n Simple_repeat Simple_repeat 1 43 0 * 620 285 106 10 chr12 22351379 22351586 -121930903 - MIR SINE MIR -3 259 33 1522 198 3 29 chr12 22351638 22351951 -121930538 - AluJo SINE Alu -7 305 1 414 309 161 38 chr12 22352927 22353380 -121929109 + L2 LINE L2 2804 3312 -1 21 0 0 0 chr12 22353414 22353435 -121929054 + AT_rich Low_complexity Low_complexity 1 21 0 287 292 195 0 chr12 22353814 22353927 -121928562 + MIR3 SINE MIR 42 176 -32 287 238 0 16 chr12 22354211 22354274 -121928215 - L2 LINE L2 -4 3309 3248 200 231 319 0 chr12 22354287 22354378 -121928111 + L2 LINE L2 3188 3307 -6 21 71 0 0 chr12 22355670 22355712 -121926777 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr12 22355731 22355752 -121926737 + AT_rich Low_complexity Low_complexity 1 21 0 548 213 90 0 chr12 22357438 22357560 -121924929 + FLAM_A SINE Alu 1 133 0 25 31 0 0 chr12 22357560 22357592 -121924897 + AT_rich Low_complexity Low_complexity 1 32 0 211 283 163 11 chr12 22358063 22358155 -121924334 + MIR SINE MIR 71 177 -31 357 24 0 0 chr12 22358649 22358691 -121923798 + (TA)n Simple_repeat Simple_repeat 1 42 0 692 279 154 36 chr12 22359532 22360037 -121922452 - L2 LINE L2 -4 3309 2726 197 439 75 47 chr12 22360387 22360747 -121921742 - L2 LINE L2 -89 3183 2814 21 57 0 0 chr12 22360796 22360831 -121921658 + AT_rich Low_complexity Low_complexity 1 35 0 182 379 0 0 chr12 22361007 22361065 -121921424 - L2 LINE L2 -601 2713 2656 377 294 149 49 chr12 22361376 22361726 -121920763 - L2 LINE L2 -678 2636 2252 349 211 166 51 chr12 22361841 22362016 -121920473 + Charlie8 DNA MER1_type 27 221 -2196 306 56 0 0 chr12 22362399 22362435 -121920054 + U2 snRNA snRNA 1 36 -152 28 48 0 0 chr12 22362620 22362662 -121919827 + AT_rich Low_complexity Low_complexity 1 42 0 2796 10 0 3 chr12 22362801 22363110 -121919379 + AluYb8 SINE Alu 1 308 -10 339 222 67 0 chr12 22363162 22363252 -121919237 + MIR SINE MIR 133 228 -34 2177 116 3 0 chr12 22363678 22364046 -121918443 + AluSp SINE Alu 1 369 0 438 309 110 56 chr12 22367400 22367576 -121914913 - L1M4 LINE L1 -1579 4567 4402 1662 164 0 48 chr12 22367576 22367887 -121914602 - AluJo SINE Alu -16 296 1 438 309 110 56 chr12 22367887 22368029 -121914460 - L1M4 LINE L1 -1744 4402 4269 2140 124 0 0 chr12 22368029 22368328 -121914161 - AluSg SINE Alu -11 299 1 438 309 110 56 chr12 22368328 22368454 -121914035 - L1M4 LINE L1 -1877 4269 4098 645 196 0 33 chr12 22368664 22368848 -121913641 + CT-rich Low_complexity Low_complexity 2 179 0 309 305 94 8 chr12 22368851 22368979 -121913510 + L2 LINE L2 3134 3272 0 2179 107 3 13 chr12 22369130 22369438 -121913051 - AluSq SINE Alu -8 305 1 931 269 29 0 chr12 22369705 22369943 -121912546 - MIR SINE MIR -8 254 10 747 298 160 20 chr12 22369969 22370436 -121912053 + L2 LINE L2 2511 3060 -212 2431 38 21 0 chr12 22371127 22371414 -121911075 + AluY SINE Alu 1 293 -18 218 299 63 116 chr12 22371697 22371981 -121910508 + L2 LINE L2 2990 3258 -14 1882 136 39 0 chr12 22372438 22372724 -121909765 - AluJb SINE Alu -15 297 1 38613 81 7 14 chr12 22372764 22374015 -121908474 - L1PA6 LINE L1 -5 6149 4892 2883 3 0 0 chr12 22374015 22374324 -121908165 - AluYa5 SINE Alu -2 309 1 38613 81 7 14 chr12 22374324 22379232 -121903257 - L1PA6 LINE L1 -1262 4892 11 194 250 21 21 chr12 22379372 22379420 -121903069 - L2 LINE L2 -10 3262 3215 21 0 0 0 chr12 22379474 22379495 -121902994 + AT_rich Low_complexity Low_complexity 1 21 0 1155 290 79 16 chr12 22380942 22381511 -121900978 - L1MC4a LINE L1 -1908 5900 5296 1982 140 3 13 chr12 22381538 22381838 -121900651 + AluSx SINE Alu 1 297 -15 1625 172 18 4 chr12 22381842 22382115 -121900374 + AluJo SINE Alu 1 277 -35 21 57 0 0 chr12 22382121 22382156 -121900333 + AT_rich Low_complexity Low_complexity 1 35 0 2370 165 7 39 chr12 22382838 22383275 -121899214 - MSTB LTR MaLR 0 426 4 206 379 74 0 chr12 22383297 22383392 -121899097 + L2 LINE L2 3164 3265 -7 189 245 38 38 chr12 22383723 22383776 -121898713 + MIR SINE MIR 21 73 -135 411 21 0 0 chr12 22383787 22383835 -121898654 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 685 318 107 39 chr12 22383845 22384329 -121898160 + MLT1K LTR MaLR 26 542 -46 581 184 118 66 chr12 22384764 22384976 -121897513 - MLT1J LTR MaLR 0 511 289 1961 110 18 0 chr12 22385489 22385761 -121896728 - AluSc SINE Alu -31 278 2 653 237 163 37 chr12 22385762 22385888 -121896601 + MIR SINE MIR 20 129 -133 805 192 61 42 chr12 22385888 22386102 -121896387 + MER20 DNA MER1_type 1 218 -1 653 237 163 37 chr12 22386102 22386190 -121896299 + MIR SINE MIR 129 261 -1 594 265 61 43 chr12 22386184 22386414 -121896075 - MIR SINE MIR -27 235 2 * 663 192 0 0 chr12 22387294 22387423 -121895066 + FRAM SINE Alu 39 150 -26 26 64 0 0 chr12 22388135 22388182 -121894307 + AT_rich Low_complexity Low_complexity 1 47 0 331 251 316 18 chr12 22388766 22388937 -121893552 + MIR SINE MIR 34 255 -7 316 368 44 28 chr12 22389204 22389386 -121893103 + MIR3 SINE MIR 1 185 -23 368 329 33 13 chr12 22390863 22391015 -121891474 + MIR3 SINE MIR 23 177 -31 418 235 178 56 chr12 22391091 22391304 -121891185 - MIR SINE MIR -8 254 16 48 67 0 0 chr12 22391597 22391687 -121890802 + AT_rich Low_complexity Low_complexity 1 90 0 37 62 0 0 chr12 22391789 22391854 -121890635 + AT_rich Low_complexity Low_complexity 1 65 0 21 71 0 0 chr12 22391994 22392036 -121890453 + AT_rich Low_complexity Low_complexity 1 42 0 3769 229 65 19 chr12 22392146 22393332 -121889157 + L1MC4 LINE L1 6708 7947 -95 197 311 0 16 chr12 22393971 22394032 -121888457 + MIR3 SINE MIR 148 207 -1 231 61 0 0 chr12 22395948 22395981 -121886508 + (A)n Simple_repeat Simple_repeat 1 33 0 378 297 21 48 chr12 22396287 22396432 -121886057 + MIR SINE MIR 122 262 0 6395 117 11 32 chr12 22396465 22397455 -121885034 + LTR5 LTR ERVK 1 969 0 1893 100 0 57 chr12 22399213 22399493 -121882996 - AluSx SINE Alu -21 291 28 234 258 15 0 chr12 22399565 22399631 -121882858 + MIR3 SINE MIR 138 204 -4 885 211 84 40 chr12 22399782 22400009 -121882480 + MER8 DNA MER2_type 1 237 -2 2102 136 0 0 chr12 22401333 22401628 -121880861 + AluSx SINE Alu 1 295 -17 414 0 0 0 chr12 22401629 22401675 -121880814 + (CA)n Simple_repeat Simple_repeat 2 47 0 560 324 83 6 chr12 22402335 22402647 -121879842 - L2 LINE L2 -87 3226 2891 266 290 112 37 chr12 22402822 22402929 -121879560 - L2 LINE L2 -557 2757 2643 212 171 0 0 chr12 22403086 22403121 -121879368 + MIR SINE MIR 61 95 -167 290 328 94 0 chr12 22403819 22403949 -121878540 + MIR SINE MIR 37 176 -74 321 213 32 11 chr12 22404748 22404842 -121877647 + L1MC4 LINE L1 7745 7840 -202 741 108 39 46 chr12 22404886 22405016 -121877473 + MER1B DNA MER1_type 211 339 0 244 114 0 0 chr12 22405038 22405073 -121877416 + L1MC4 LINE L1 7857 7891 -151 259 289 0 10 chr12 22405078 22405182 -121877307 + (TA)n Simple_repeat Simple_repeat 2 104 0 306 282 14 28 chr12 22405183 22405325 -121877164 + L1MC4 LINE L1 7902 8041 -1 * 1502 254 69 26 chr12 22405320 22405969 -121876520 + L1MC4 LINE L1 7225 7901 -141 2183 123 7 0 chr12 22406364 22406666 -121875823 + AluSc SINE Alu 1 304 -5 2557 36 0 3 chr12 22409681 22409988 -121872501 - AluY SINE Alu -5 306 1 402 231 169 39 chr12 22411506 22411636 -121870853 - L2 LINE L2 -5 3308 3162 4060 136 32 33 chr12 22412871 22414252 -121868237 + pTR5 LTR ERV1 743 2438 0 2087 102 0 46 chr12 22414806 22414931 -121867558 + AluY SINE Alu 21 150 -161 2234 116 0 0 chr12 22414931 22415234 -121867255 + AluSg SINE Alu 1 303 -7 2087 102 0 46 chr12 22415234 22415412 -121867077 + AluY SINE Alu 150 310 -1 660 196 14 14 chr12 22415803 22415941 -121866548 - MIR SINE MIR -55 207 70 285 29 0 0 chr12 22415942 22415976 -121866513 + (TC)n Simple_repeat Simple_repeat 2 35 0 2069 117 0 44 chr12 22415985 22416301 -121866188 - AluSx SINE Alu -10 302 1 365 310 108 43 chr12 22416302 22416534 -121865955 - L1MC4a LINE L1 -1953 5855 5609 2262 70 9 70 chr12 22417018 22417346 -121865143 + AluSg SINE Alu 1 308 -2 2734 123 9 5 chr12 22417473 22417905 -121864584 - MER57B LTR ERV1 0 434 1 596 266 23 5 chr12 22417932 22418146 -121864343 - L1MD3 LINE L1 -1 7994 7777 21 36 0 0 chr12 22418226 22418254 -121864235 + AT_rich Low_complexity Low_complexity 1 28 0 726 186 0 8 chr12 22418802 22418931 -121863558 - FLAM_C SINE Alu -5 128 1 202 244 44 0 chr12 22419001 22419046 -121863443 - L2 LINE L2 -16 3297 3251 765 292 17 38 chr12 22419667 22419907 -121862582 - MIR SINE MIR -26 236 2 814 122 0 81 chr12 22420053 22420225 -121862264 - MER50 LTR ERV1 -80 654 497 649 127 102 0 chr12 22420270 22420388 -121862101 + Ricksha_b DNA DNA 1 130 -1124 3990 134 29 67 chr12 22420402 22420455 -121862034 + Ricksha_b DNA DNA 245 298 -2556 2270 99 0 3 chr12 22420455 22420747 -121861742 + AluSg SINE Alu 1 291 -19 3990 134 29 67 chr12 22420747 22421548 -121860941 + Ricksha_b DNA DNA 298 1067 -187 790 152 89 11 chr12 22421606 22421797 -121860692 + Ricksha_b DNA DNA 1441 1646 -8 1005 255 156 12 chr12 22422794 22423300 -121859189 - L1M4 LINE L1 -1974 4172 3594 346 349 35 15 chr12 22423300 22423498 -121858991 - L1MEc LINE L1 -5620 776 575 371 327 66 7 chr12 22423601 22423873 -121858616 - L1MEc LINE L1 -6017 379 92 379 316 8 8 chr12 22424137 22424254 -121858235 - MER5A DNA MER1_type -72 117 1 218 362 64 0 chr12 22424421 22424515 -121857974 + MIR SINE MIR 38 137 -125 4007 103 173 127 chr12 22424760 22425630 -121856859 - pTR5 LTR ERV1 0 2438 1609 315 0 0 0 chr12 22425630 22425665 -121856824 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 4007 103 173 127 chr12 22425665 22426143 -121856346 - pTR5 LTR ERV1 -829 1609 741 3558 166 104 18 chr12 22426265 22427002 -121855487 + MER21B LTR ERV1 1 801 -62 284 176 48 168 chr12 22427002 22427127 -121855362 + MER21B LTR ERV1 754 863 0 204 125 0 0 chr12 22427215 22427247 -121855242 + (TCC)n Simple_repeat Simple_repeat 3 34 0 205 368 11 11 chr12 22427903 22427998 -121854491 + L2 LINE L2 2253 2347 -967 337 252 159 0 chr12 22428546 22428653 -121853836 - L2 LINE L2 -2 3270 3147 3055 109 29 78 chr12 22428659 22429285 -121853204 + LTR1 LTR ERV1 1 595 -190 416 151 0 14 chr12 22429278 22429351 -121853138 + LTR1 LTR ERV1 714 785 0 * 372 152 0 0 chr12 22429895 22429961 -121852528 + CT-rich Low_complexity Low_complexity 1 66 0 2507 30 3 13 chr12 22431696 22431997 -121850492 + AluY SINE Alu 1 298 -13 328 330 11 0 chr12 22432355 22432449 -121850040 + MIR SINE MIR 52 146 -116 2063 138 3 16 chr12 22432992 22433296 -121849193 + AluSx SINE Alu 1 300 -12 1076 136 34 23 chr12 22433296 22433472 -121849017 + AluSg/x SINE Alu 134 311 -1 238 356 0 30 chr12 22434519 22434620 -121847869 + L2 LINE L2 3173 3270 -2 2165 116 27 3 chr12 22435158 22435459 -121847030 - AluSg SINE Alu -2 308 1 195 234 0 47 chr12 22435685 22435749 -121846740 - MER5A DNA MER1_type -114 75 15 439 265 61 8 chr12 22436019 22436151 -121846338 - L2 LINE L2 -397 2917 2779 2291 220 87 85 chr12 22436166 22436360 -121846129 - L1MC5 LINE L1 -36 7925 7733 1900 133 10 30 chr12 22436360 22436661 -121845828 - AluSx SINE Alu -17 295 1 2291 220 87 85 chr12 22436661 22438108 -121844381 - L1MC5 LINE L1 -228 7733 6293 2452 84 0 0 chr12 22438171 22438470 -121844019 + AluSc SINE Alu 1 299 -10 583 249 59 23 chr12 22438544 22438765 -121843724 - L1MC5 LINE L1 -1892 5916 5688 2344 279 68 35 chr12 22438775 22439632 -121842857 + L1PA15 LINE L1 2 886 -5901 15239 211 40 22 chr12 22439668 22440405 -121842084 + L1PA15 LINE L1 1264 1987 -4829 2077 87 11 14 chr12 22440405 22440692 -121841797 - AluY SINE Alu -13 298 13 15239 211 40 22 chr12 22440692 22442508 -121839981 + L1PA15 LINE L1 1987 3770 -3046 1776 181 3 0 chr12 22442508 22442801 -121839688 + AluJb SINE Alu 1 294 -18 15239 211 40 22 chr12 22442801 22445687 -121836802 + L1PA15 LINE L1 3770 6816 0 4081 135 35 55 chr12 22445838 22446609 -121835880 - LTR1 LTR ERV1 0 785 30 2969 176 15 31 chr12 22446793 22447408 -121835081 + MER6A DNA MER2_type 1 605 0 330 189 0 74 chr12 22448102 22448197 -121834292 - MIR SINE MIR 0 262 175 473 321 58 33 chr12 22448470 22448707 -121833782 + MIR SINE MIR 1 238 -24 1226 205 62 39 chr12 22451739 22452075 -121830414 + MER2 DNA MER2_type 1 344 0 215 250 0 17 chr12 22452476 22452536 -121829953 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 412 338 112 29 chr12 22452847 22453223 -121829266 - HAL1b LINE L1 -569 779 373 363 137 41 41 chr12 22453272 22453345 -121829144 + MLT1E1 LTR MaLR 1 73 -581 759 190 0 29 chr12 22453345 22453482 -121829007 + MLT1A2 LTR MaLR 1 133 -241 1891 82 4 8 chr12 22453482 22453725 -121828764 - AluSp SINE Alu -65 248 7 1268 237 107 7 chr12 22453772 22454072 -121828417 + MLT1E3 LTR MaLR 295 624 0 2527 258 24 30 chr12 22454074 22454876 -121827613 - L1ME1 LINE L1 -52 6114 5318 5325 138 21 28 chr12 22454885 22455730 -121826759 - L1PB3 LINE L1 -5 6149 5301 2301 83 0 0 chr12 22455730 22456019 -121826470 + AluY SINE Alu 1 289 -22 5325 138 21 28 chr12 22456019 22456401 -121826088 - L1PB3 LINE L1 -853 5301 4918 231 187 0 27 chr12 22456393 22456468 -121826021 - L1ME1 LINE L1 -816 5330 5258 * 622 121 0 0 chr12 22456480 22456571 -121825918 - AluSg/x SINE Alu -9 303 213 934 199 45 5 chr12 22456615 22456836 -121825653 - L1ME1 LINE L1 -968 5178 4949 2259 138 30 20 chr12 22456836 22457242 -121825247 - L1MA4A LINE L1 -6 6297 5888 1685 110 47 0 chr12 22457243 22457497 -121824992 + MSTB1 LTR MaLR 167 432 0 1995 246 71 2 chr12 22457498 22458034 -121824455 - L1ME1 LINE L1 -148 6018 5446 513 242 105 68 chr12 22458134 22458251 -121824238 - L1ME3A LINE L1 -17 6153 6042 2427 60 0 3 chr12 22458251 22458549 -121823940 - AluY SINE Alu -14 297 1 513 242 105 68 chr12 22458549 22458679 -121823810 - L1ME3A LINE L1 -128 6042 5897 2449 73 3 3 chr12 22459735 22460038 -121822451 - AluSp SINE Alu -7 306 4 609 244 139 42 chr12 22460315 22460553 -121821936 + MIR SINE MIR 2 262 0 285 414 53 6 chr12 22460638 22460807 -121821682 - MIR3 SINE MIR -11 197 21 217 367 0 0 chr12 22461566 22461645 -121820844 - L2 LINE L2 -8 3264 3186 * 278 337 11 0 chr12 22461632 22461724 -121820765 - MIR SINE MIR -158 104 12 281 244 26 13 chr12 22462142 22462220 -121820269 + MIR SINE MIR 63 141 -121 199 288 45 54 chr12 22462557 22462668 -121819821 - MIR SINE MIR -62 146 37 22 35 0 0 chr12 22463741 22463770 -121818719 + AT_rich Low_complexity Low_complexity 1 29 0 362 211 21 21 chr12 22464010 22464105 -121818384 - L1ME3A LINE L1 -339 5782 5688 207 0 0 0 chr12 22464576 22464599 -121817890 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 686 139 9 0 chr12 22464599 22464714 -121817775 - LTR9B LTR ERV1 -84 560 445 254 292 56 49 chr12 22464910 22465054 -121817435 - L1ME3A LINE L1 -1304 4842 4698 1510 174 107 58 chr12 22466871 22467303 -121815186 + MSTB2 LTR MaLR 5 457 0 593 261 21 0 chr12 22467759 22467901 -121814588 + MER58A DNA MER1_type 11 155 0 3053 288 123 8 chr12 22467946 22469116 -121813373 - L2 LINE L2 -1497 1817 513 585 227 34 23 chr12 22469150 22469326 -121813163 + MER5B DNA MER1_type 1 178 0 241 265 60 12 chr12 22469570 22469653 -121812836 + MIR SINE MIR 74 160 -102 35 71 0 0 chr12 22469767 22469837 -121812652 + AT_rich Low_complexity Low_complexity 1 70 0 186 262 16 33 chr12 22471956 22472017 -121810472 - MER5B DNA MER1_type 0 178 119 2036 142 3 0 chr12 22472170 22472466 -121810023 + AluSx SINE Alu 1 297 -15 974 306 51 21 chr12 22472815 22473204 -121809285 - LTR33 LTR ERVL -6 515 115 258 344 31 23 chr12 22473317 22473445 -121809044 - L2 LINE L2 -5 3308 3180 465 210 341 0 chr12 22473997 22474135 -121808354 - MER5A DNA MER1_type -1 188 4 1341 169 20 66 chr12 22474964 22475138 -121807351 + Tigger1 DNA MER2_type 2 158 -2260 2391 78 10 0 chr12 22475138 22475444 -121807045 - AluSg SINE Alu -1 309 1 1341 169 20 66 chr12 22475444 22475571 -121806918 + Tigger1 DNA MER2_type 158 289 -2129 * 7851 127 42 16 chr12 22475560 22475662 -121806827 + Tigger1 DNA MER2_type 1070 1168 -1250 2315 101 0 3 chr12 22475662 22475970 -121806519 + AluSx SINE Alu 1 307 -5 7851 127 42 16 chr12 22475970 22476768 -121805721 + Tigger1 DNA MER2_type 1168 2017 -401 584 216 17 0 chr12 22476768 22476884 -121805605 + FLAM_C SINE Alu 1 118 -15 7851 127 42 16 chr12 22476884 22477296 -121805193 + Tigger1 DNA MER2_type 2017 2417 -1 240 299 56 70 chr12 22477377 22477591 -121804898 - MLT1J LTR MaLR -191 320 110 483 335 49 5 chr12 22477855 22478040 -121804449 + MIR SINE MIR 57 249 -13 217 196 59 20 chr12 22479041 22479092 -121803397 - L2 LINE L2 -5 3308 3256 * 603 278 46 107 chr12 22479073 22479505 -121802984 + L2 LINE L2 2908 3313 0 192 264 222 0 chr12 22480137 22480209 -121802280 - MIR SINE MIR -73 189 102 23 33 0 0 chr12 22483485 22483515 -121798974 + AT_rich Low_complexity Low_complexity 1 30 0 420 229 81 93 chr12 22483711 22484034 -121798455 - L1M4c LINE L1 -4886 1233 915 532 168 40 16 chr12 22484223 22484347 -121798142 + MLT1A1 LTR MaLR 4 131 -234 285 345 17 8 chr12 22484357 22484476 -121798013 - L1M4c LINE L1 -5448 671 552 6941 162 25 6 chr12 22484493 22485719 -121796770 - L1PA13 LINE L1 -1364 4782 3533 6325 89 10 4 chr12 22485723 22487099 -121795390 + L1PA13 LINE L1 4777 6161 -2 2097 87 0 62 chr12 22487663 22487986 -121794503 + AluY SINE Alu 1 303 -8 1100 243 61 89 chr12 22488040 22488358 -121794131 - LTR16A1 LTR ERVL 0 457 132 957 147 0 0 chr12 22488358 22488528 -121793961 + (TCCC)n Simple_repeat Simple_repeat 3 172 0 1459 92 5 0 chr12 22488529 22488725 -121793764 - AluSg/x SINE Alu -33 279 83 1100 243 61 89 chr12 22488725 22488865 -121793624 - LTR16A1 LTR ERVL -324 133 10 11318 212 34 25 chr12 22489655 22493702 -121788787 - L1MA8 LINE L1 -1 6406 2310 1331 152 31 9 chr12 22493702 22493926 -121788563 - MER30 DNA MER1_type 0 230 2 11318 212 34 25 chr12 22493926 22494244 -121788245 - L1MA8 LINE L1 -4097 2310 1996 2955 236 26 48 chr12 22494260 22495339 -121787150 - L1M4c LINE L1 -4528 1603 549 392 153 59 0 chr12 22495362 22495447 -121787042 + L1M4 LINE L1 1290 1379 -5163 281 270 71 63 chr12 22495461 22495587 -121786902 - L1MA8 LINE L1 -5089 1214 1088 231 239 57 68 chr12 22495655 22495743 -121786746 - L1M4c LINE L1 -5489 561 475 302 237 26 13 chr12 22495796 22495872 -121786617 - L1M4c LINE L1 -5814 236 160 207 286 0 0 chr12 22497294 22497350 -121785139 + T-rich Low_complexity Low_complexity 1 56 0 3607 146 0 16 chr12 22497529 22498139 -121784350 - L1PA6 LINE L1 -4498 1648 1049 * 24441 66 8 2 chr12 22498138 22502553 -121779936 + L1PA6 LINE L1 1630 6154 0 21 0 0 0 chr12 22503565 22503586 -121778903 + AT_rich Low_complexity Low_complexity 1 21 0 1623 230 64 60 chr12 22505105 22505605 -121776884 + MLT1E LTR MaLR 92 593 0 188 329 158 36 chr12 22506477 22506781 -121775708 - L2 LINE L2 -407 2907 2567 295 313 116 0 chr12 22508100 22508212 -121774277 - L2 LINE L2 0 3313 3189 400 171 27 36 chr12 22508453 22508564 -121773925 + L1MC5 LINE L1 7802 7911 -50 292 212 141 12 chr12 22510177 22510262 -121772227 - MIR SINE MIR -1 261 166 231 127 56 28 chr12 22510262 22510333 -121772156 + (TATAA)n Simple_repeat Simple_repeat 5 77 0 384 270 138 33 chr12 22510334 22510486 -121772003 - MIR SINE MIR -94 168 1 218 246 0 43 chr12 22510535 22510604 -121771885 + L2 LINE L2 3174 3239 -33 1119 283 74 23 chr12 22510605 22511209 -121771280 - L1ME3A LINE L1 -331 5839 5192 359 327 81 24 chr12 22511313 22511732 -121770757 - MLT1J LTR MaLR -60 451 9 922 276 19 0 chr12 22513862 22514076 -121768413 - MIR SINE MIR -42 220 3 570 257 155 41 chr12 22514076 22514324 -121768165 - L2 LINE L2 -272 3041 2733 2294 105 0 6 chr12 22514324 22514638 -121767851 + AluSx SINE Alu 1 312 0 570 257 155 41 chr12 22514638 22514753 -121767736 - L2 LINE L2 -580 2733 2633 859 268 101 10 chr12 22515524 22515830 -121766659 - L2 LINE L2 -724 2590 2257 1884 177 6 15 chr12 22518841 22519175 -121763314 + MER1B DNA MER1_type 8 338 -1 14842 140 15 8 chr12 22519260 22519512 -121762977 + Tigger1 DNA MER2_type 1 250 -2168 1999 146 30 30 chr12 22519512 22519848 -121762641 - MER1B DNA MER1_type 0 337 2 14842 140 15 8 chr12 22519848 22521995 -121760494 + Tigger1 DNA MER2_type 250 2418 0 210 313 61 54 chr12 22522078 22522225 -121760264 - MER5B DNA MER1_type -28 150 3 180 0 0 0 chr12 22525854 22525874 -121756615 + (T)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr12 22526349 22526372 -121756117 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 22526656 22526677 -121755812 + AT_rich Low_complexity Low_complexity 1 21 0 286 286 87 16 chr12 22528054 22528180 -121754309 + L2 LINE L2 3138 3272 0 192 324 27 0 chr12 22528266 22528340 -121754149 - L2 LINE L2 -545 2769 2694 281 277 92 25 chr12 22529041 22529160 -121753329 + L2 LINE L2 3182 3308 -5 1534 79 75 0 chr12 22529373 22529587 -121752902 - MER30 DNA MER1_type 0 230 1 209 286 14 14 chr12 22529721 22529791 -121752698 + L2 LINE L2 3242 3311 -2 735 330 141 0 chr12 22530922 22531292 -121751197 - L2 LINE L2 -75 3238 2817 275 381 90 13 chr12 22531375 22531530 -121750959 - MIR SINE MIR -76 186 20 334 287 46 0 chr12 22531767 22531854 -121750635 + MIR SINE MIR 161 251 -11 615 294 64 9 chr12 22532925 22533143 -121749346 + MIR SINE MIR 1 230 -32 1892 96 81 15 chr12 22533167 22533460 -121749029 - AluSg SINE Alu 0 310 1 23 0 0 0 chr12 22533467 22533490 -121748999 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 22533527 22533549 -121748940 + AT_rich Low_complexity Low_complexity 1 22 0 633 315 61 23 chr12 22533666 22534142 -121748347 - L1M4 LINE L1 -2145 4001 3508 * 6545 42 2 4 chr12 22534137 22534945 -121747544 - L1PA7 LINE L1 -1 6153 5347 316 286 112 13 chr12 22534972 22535196 -121747293 - L1MEd LINE L1 -4970 1149 904 1929 236 95 45 chr12 22535216 22535903 -121746586 - L1ME3 LINE L1 -71 6091 5371 306 215 83 35 chr12 22535903 22536047 -121746442 - L1MEd LINE L1 -5287 832 682 326 319 115 0 chr12 22536422 22536535 -121745954 - MIR SINE MIR -64 144 19 3365 91 9 0 chr12 22536589 22537031 -121745458 - MLT2A2 LTR ERVL 0 453 8 449 284 232 0 chr12 22537096 22537307 -121745182 + MIR SINE MIR 3 262 0 301 326 196 7 chr12 22538787 22538925 -121743564 + MIR SINE MIR 10 173 -89 2274 107 0 25 chr12 22539233 22539550 -121742939 + AluSx SINE Alu 1 309 -3 1268 210 49 43 chr12 22540242 22540547 -121741942 - AluJo SINE Alu -5 307 1 269 196 186 0 chr12 22540958 22541055 -121741434 + MLT1H LTR MaLR 1 115 -434 32024 105 12 57 chr12 22541092 22547531 -121734958 - L1PA7 LINE L1 -1 6153 12 31 26 0 0 chr12 22548684 22548722 -121733767 + AT_rich Low_complexity Low_complexity 1 38 0 216 333 0 18 chr12 22549120 22549177 -121733312 - L2 LINE L2 -31 3241 3186 24 0 0 0 chr12 22549412 22549436 -121733053 + AT_rich Low_complexity Low_complexity 1 24 0 2795 12 0 0 chr12 22549765 22550191 -121732298 - L1PA2 LINE L1 -580 5575 5150 5310 12 0 0 chr12 22550191 22550806 -121731683 + L1PA2 LINE L1 5555 6177 0 330 350 115 0 chr12 22553298 22553515 -121728974 - MIR SINE MIR -1 261 20 740 308 45 12 chr12 22553583 22553830 -121728659 + MIR SINE MIR 8 262 0 1376 185 50 0 chr12 22553894 22554196 -121728293 - MER33 DNA MER1_type 0 324 8 300 86 379 0 chr12 22554557 22554615 -121727874 + MADE1 DNA Mariner 1 80 0 23 54 0 0 chr12 22554857 22554894 -121727595 + AT_rich Low_complexity Low_complexity 1 37 0 2281 90 10 0 chr12 22554899 22555199 -121727290 + AluSp SINE Alu 1 303 -10 21 0 0 0 chr12 22559267 22559288 -121723201 + AT_rich Low_complexity Low_complexity 1 21 0 293 157 0 39 chr12 22559321 22559372 -121723117 - MIR SINE MIR -84 124 76 220 333 75 50 chr12 22559432 22559552 -121722937 + L2 LINE L2 3150 3272 0 1017 170 23 0 chr12 22560147 22560318 -121722171 + FAM SINE Alu 1 175 0 463 254 127 15 chr12 22561532 22561666 -121720823 + L2 LINE L2 3165 3313 0 2816 91 5 0 chr12 22561895 22562268 -121720221 - THE1C LTR MaLR 0 375 1 1876 133 55 33 chr12 22562521 22562888 -121719601 + THE1C LTR MaLR 1 375 0 671 289 21 11 chr12 22562894 22563084 -121719405 + MIR SINE MIR 23 214 -48 4640 52 0 0 chr12 22563809 22564381 -121718108 + L1PA7 LINE L1 5579 6150 -4 384 301 71 36 chr12 22564515 22564711 -121717778 + L2 LINE L2 3076 3278 -35 190 263 70 0 chr12 22565333 22565390 -121717099 + MIR SINE MIR 160 220 -42 2028 152 0 0 chr12 22566424 22566733 -121715756 + AluJb SINE Alu 1 309 -3 205 200 0 0 chr12 22567478 22567518 -121714971 + (TA)n Simple_repeat Simple_repeat 2 41 0 396 0 0 0 chr12 22567560 22567604 -121714885 + (T)n Simple_repeat Simple_repeat 1 44 0 22 35 0 0 chr12 22568843 22568872 -121713617 + AT_rich Low_complexity Low_complexity 1 29 0 1738 114 4 4 chr12 22569406 22569660 -121712829 - L1PA8A LINE L1 0 6131 5878 317 146 0 18 chr12 22569975 22570030 -121712459 - L1MC4 LINE L1 -1374 6668 6615 324 0 0 0 chr12 22570050 22570086 -121712403 + (TG)n Simple_repeat Simple_repeat 1 36 0 237 128 0 0 chr12 22570367 22570406 -121712083 - MADE1 DNA Mariner -40 40 2 363 325 64 6 chr12 22571015 22571172 -121711317 + MIR SINE MIR 31 196 -66 316 295 54 9 chr12 22571908 22572020 -121710469 + L2 LINE L2 2694 2810 -504 850 321 97 38 chr12 22572099 22572573 -121709916 + L2 LINE L2 2810 3311 -2 25 51 0 0 chr12 22572930 22572969 -121709520 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr12 22573714 22573741 -121708748 + AT_rich Low_complexity Low_complexity 1 27 0 2201 99 27 0 chr12 22574041 22574333 -121708156 + AluY SINE Alu 1 300 -11 5645 94 0 44 chr12 22575668 22576552 -121705937 - L1P LINE L1 -2148 3998 3154 6232 57 1 0 chr12 22576552 22577327 -121705162 + L1PA7 LINE L1 5378 6153 -1 408 20 0 0 chr12 22579051 22579100 -121703389 + (CA)n Simple_repeat Simple_repeat 2 50 0 259 216 190 26 chr12 22579847 22579963 -121702526 - MIR SINE MIR -11 251 117 2650 48 0 0 chr12 22580715 22581024 -121701465 - AluY SINE Alu -2 309 1 386 20 20 0 chr12 22582498 22582549 -121699940 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 1920 104 8 0 chr12 22582579 22582830 -121699659 - AluSx SINE Alu -14 298 46 347 293 81 16 chr12 22582874 22582997 -121699492 - L2 LINE L2 0 3272 3142 5205 114 8 3 chr12 22584044 22584805 -121697684 + L1PB1 LINE L1 5387 6151 0 475 353 87 36 chr12 22585075 22585797 -121696692 + L2 LINE L2 1316 2074 -1240 369 0 0 0 chr12 22586310 22586351 -121696138 + (CA)n Simple_repeat Simple_repeat 2 42 0 337 359 56 59 chr12 22586764 22587051 -121695438 - L2 LINE L2 -1 3271 2986 866 347 77 36 chr12 22587220 22587937 -121694552 + L2 LINE L2 2149 2894 -420 377 290 46 50 chr12 22588215 22588453 -121694036 - L2 LINE L2 -4 3309 3073 257 294 87 11 chr12 22588495 22588587 -121693902 + L2 LINE L2 3174 3272 0 24 53 0 0 chr12 22589172 22589210 -121693279 + AT_rich Low_complexity Low_complexity 1 38 0 365 327 80 6 chr12 22589214 22589376 -121693113 - MIR SINE MIR -14 248 75 186 337 11 63 chr12 22589962 22590057 -121692432 - L2 LINE L2 -183 3089 3000 1855 150 27 0 chr12 22590275 22590568 -121691921 + AluSx SINE Alu 1 301 -11 224 409 0 27 chr12 22590802 22590951 -121691538 - L2 LINE L2 -838 2476 2332 197 347 78 72 chr12 22592513 22592680 -121689809 + L2 LINE L2 3096 3263 -9 2502 74 0 0 chr12 22592871 22593180 -121689309 - AluSg SINE Alu -1 309 1 969 157 13 1 chr12 22593475 22593639 -121688850 + MER2 DNA MER2_type 1 173 -163 243 316 45 19 chr12 22594199 22594354 -121688135 - L1MC4a LINE L1 -1854 5954 5796 351 274 93 76 chr12 22594384 22594727 -121687762 - L1MC4a LINE L1 -776 5370 5022 233 338 88 0 chr12 22594769 22594905 -121687584 - L1MC4a LINE L1 -1210 4936 4789 260 248 9 19 chr12 22595153 22595258 -121687231 - L1MC4a LINE L1 -1877 4269 4166 21 36 0 0 chr12 22595725 22595753 -121686736 + AT_rich Low_complexity Low_complexity 1 28 0 197 263 158 0 chr12 22596954 22597030 -121685459 - MIR SINE MIR -10 252 165 182 79 0 53 chr12 22601120 22601158 -121681331 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 869 185 105 20 chr12 22601585 22601785 -121680704 - MER20 DNA MER1_type 0 219 3 21 0 0 0 chr12 22602608 22602629 -121679860 + AT_rich Low_complexity Low_complexity 1 21 0 493 270 7 47 chr12 22602899 22603047 -121679442 + MIR SINE MIR 47 188 -74 184 318 12 59 chr12 22603212 22603297 -121679192 - MIR SINE MIR -74 188 108 894 101 29 0 chr12 22604164 22604303 -121678186 + L1PA15 LINE L1 6023 6165 0 2022 101 13 51 chr12 22604556 22604872 -121677617 + AluSx SINE Alu 1 304 -8 341 270 81 9 chr12 22604880 22604991 -121677498 + MIR SINE MIR 144 262 0 22 0 0 0 chr12 22606683 22606705 -121675784 + AT_rich Low_complexity Low_complexity 1 22 0 2046 119 0 7 chr12 22606731 22607045 -121675444 - AluSx SINE Alu 0 312 1 209 147 0 0 chr12 22607163 22607197 -121675292 + MIR SINE MIR 119 152 -110 557 346 76 5 chr12 22607396 22607528 -121674961 + MIR SINE MIR 8 162 -100 222 118 0 0 chr12 22607528 22607562 -121674927 + (TAA)n Simple_repeat Simple_repeat 1 34 0 557 346 76 5 chr12 22607562 22607640 -121674849 + MIR SINE MIR 162 233 -29 318 299 21 0 chr12 22608250 22608347 -121674142 + GA-rich Low_complexity Low_complexity 2 100 0 324 308 147 13 chr12 22608769 22608993 -121673496 + L3 LINE CR1 1147 1400 -177 1591 239 95 25 chr12 22608993 22609465 -121673024 + MLT1D LTR MaLR 1 505 0 2020 139 0 17 chr12 22609815 22610117 -121672372 + AluSx SINE Alu 1 297 -15 538 251 64 11 chr12 22611617 22611804 -121670685 - MIR SINE MIR 0 262 66 419 307 136 0 chr12 22611806 22611982 -121670507 + MIR SINE MIR 8 207 -55 200 191 43 21 chr12 22612666 22612713 -121669776 - MIR SINE MIR -3 259 212 1970 143 3 10 chr12 22612755 22613055 -121669434 - AluSx SINE Alu -14 298 1 207 219 0 0 chr12 22613735 22613776 -121668713 + (TA)n Simple_repeat Simple_repeat 1 41 0 25 0 0 0 chr12 22614879 22614904 -121667585 + AT_rich Low_complexity Low_complexity 1 25 0 216 287 225 8 chr12 22616265 22616394 -121666095 + MIR3 SINE MIR 49 205 -3 194 307 117 28 chr12 22617081 22617260 -121665229 - L2 LINE L2 -901 2413 2219 240 287 156 8 chr12 22617301 22617423 -121665066 - L2 LINE L2 -6 3307 3168 240 368 124 30 chr12 22617597 22617896 -121664593 - L2 LINE L2 -342 2972 2646 335 344 9 40 chr12 22617954 22618178 -121664311 + L2 LINE L2 3097 3313 0 210 167 0 0 chr12 22619341 22619377 -121663112 + A-rich Low_complexity Low_complexity 1 36 0 2304 97 0 0 chr12 22619881 22620181 -121662308 + AluY SINE Alu 1 300 -11 23 68 0 0 chr12 22620525 22620569 -121661920 + AT_rich Low_complexity Low_complexity 1 44 0 629 307 69 62 chr12 22620786 22621403 -121661086 + L2 LINE L2 2510 3308 -5 1788 166 0 10 chr12 22621778 22622073 -121660416 - AluJo SINE Alu -12 300 9 1143 138 38 5 chr12 22623172 22623382 -121659107 - MER20 DNA MER1_type -2 217 1 32 26 0 0 chr12 22624424 22624463 -121658026 + AT_rich Low_complexity Low_complexity 1 39 0 402 141 71 0 chr12 22624781 22624866 -121657623 - L1MA10 LINE L1 -1722 4424 4334 * 3956 165 52 14 chr12 22624865 22626327 -121656162 + L1MA10 LINE L1 4408 5940 -249 1817 184 5 35 chr12 22626380 22626777 -121655712 + L1MA10 LINE L1 5948 6332 -2 1569 64 0 0 chr12 22627326 22627513 -121654976 + AluY SINE Alu 1 187 -124 501 33 0 0 chr12 22627513 22627574 -121654915 + AluY SINE Alu 221 281 -31 216 0 0 0 chr12 22627578 22627602 -121654887 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 203 319 44 44 chr12 22628602 22628715 -121653774 - L2 LINE L2 -24 3248 3136 258 337 39 42 chr12 22629180 22629465 -121653024 - L2 LINE L2 -1903 1411 1128 181 407 105 23 chr12 22630005 22630349 -121652140 - L2 LINE L2 -2561 753 382 1437 142 82 15 chr12 22630872 22631140 -121651349 + L1MB5 LINE L1 5881 6166 -8 23 0 0 0 chr12 22631146 22631169 -121651320 + AT_rich Low_complexity Low_complexity 1 23 0 354 353 94 14 chr12 22631352 22631627 -121650862 + L1ME3A LINE L1 4664 4960 -1186 702 245 44 69 chr12 22631735 22632104 -121650385 + L1ME3A LINE L1 4958 5314 -832 1033 217 229 55 chr12 22632135 22632568 -121649921 + L1ME3A LINE L1 5387 5894 -276 266 280 42 50 chr12 22632372 22632611 -121649878 + L1MA3 LINE L1 5705 5941 -364 * 22 35 0 0 chr12 22632791 22632820 -121649669 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr12 22633231 22633258 -121649231 + (CA)n Simple_repeat Simple_repeat 2 28 0 301 245 0 0 chr12 22633258 22633311 -121649178 + MER5B DNA MER1_type 125 177 -1 290 321 94 17 chr12 22633346 22633510 -121648979 - MIR3 SINE MIR -59 149 14 2280 76 0 10 chr12 22634799 22635101 -121647388 + THE1B LTR MaLR 66 364 0 1601 195 3 7 chr12 22635599 22635896 -121646593 - AluJo SINE Alu -16 296 1 189 0 0 0 chr12 22637306 22637327 -121645162 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 1623 287 118 35 chr12 22637631 22638664 -121643825 + L2 LINE L2 2172 3295 -18 525 232 18 0 chr12 22639604 22639716 -121642773 + MER81 DNA DNA 1 114 0 380 283 88 31 chr12 22639809 22639968 -121642521 - MIR SINE MIR -86 176 9 304 265 31 10 chr12 22640016 22640114 -121642375 + MER5A DNA MER1_type 4 103 -86 239 308 90 0 chr12 22641046 22641124 -121641365 + L2 LINE L2 3187 3271 -1 318 325 151 39 chr12 22641411 22641617 -121640872 + L2 LINE L2 3044 3272 0 193 386 14 59 chr12 22641855 22642075 -121640414 + L2 LINE L2 2828 3037 -235 3481 34 0 0 chr12 22642086 22642504 -121639985 + L1PA4 LINE L1 5735 6152 -3 353 237 100 46 chr12 22644895 22645039 -121637450 + L1ME LINE L1 5486 5638 -483 626 265 65 25 chr12 22645041 22645286 -121637203 + L1ME4a LINE L1 5566 5820 -301 23 54 0 0 chr12 22645353 22645390 -121637099 + AT_rich Low_complexity Low_complexity 1 37 0 271 204 183 22 chr12 22645396 22645533 -121636956 + L1ME4a LINE L1 5962 6120 -1 1049 164 0 6 chr12 22646138 22646303 -121636186 - AluJb SINE Alu -17 295 132 707 200 133 0 chr12 22646488 22646653 -121635836 + MER20 DNA MER1_type 33 219 0 187 300 144 22 chr12 22647515 22647605 -121634884 - MIR SINE MIR -66 142 42 817 0 0 0 chr12 22647629 22647723 -121634766 - L1PA2 LINE L1 -2 6153 6060 6115 70 49 0 chr12 22647971 22648919 -121633570 - L1PA10 LINE L1 -11 6157 5170 576 252 23 64 chr12 22648978 22649203 -121633286 - MIR SINE MIR -16 246 34 358 316 15 52 chr12 22649407 22649543 -121632946 + MIR SINE MIR 31 161 -101 727 198 64 6 chr12 22649544 22649701 -121632788 + FRAM SINE Alu 1 166 -10 283 313 18 9 chr12 22649701 22649813 -121632676 + MIR SINE MIR 150 262 0 1893 123 3 3 chr12 22650568 22650853 -121631636 - MER75 DNA T2_type 0 514 230 41082 59 9 1 chr12 22650859 22656947 -121625542 + L1PA5 LINE L1 12 6151 -3 1637 127 8 0 chr12 22656947 22657192 -121625297 - MER75 DNA T2_type -264 250 4 292 287 101 31 chr12 22657336 22657465 -121625024 - MIR3 SINE MIR -56 152 15 256 93 93 74 chr12 22657466 22657520 -121624969 + MER3 DNA MER1_type 153 207 -2 274 306 109 48 chr12 22657879 22658026 -121624463 + MIR3 SINE MIR 28 183 -25 218 280 118 21 chr12 22661237 22661285 -121621204 + MIR SINE MIR 50 92 -170 527 307 74 25 chr12 22661285 22661529 -121620960 - MIR SINE MIR -2 260 5 218 280 118 21 chr12 22661529 22661573 -121620916 + MIR SINE MIR 92 151 -111 220 314 0 0 chr12 22663597 22663648 -121618841 - L2 LINE L2 -243 3070 3020 22 0 0 0 chr12 22663826 22663848 -121618641 + AT_rich Low_complexity Low_complexity 1 22 0 222 370 0 11 chr12 22664068 22664160 -121618329 + MIR SINE MIR 162 252 -10 2411 90 0 0 chr12 22666424 22666724 -121615765 - AluSp SINE Alu -13 300 1 333 0 0 0 chr12 22666749 22666786 -121615703 + (TG)n Simple_repeat Simple_repeat 2 38 0 311 203 0 38 chr12 22666799 22666878 -121615611 - L1MC3 LINE L1 -1139 6646 6571 308 304 0 22 chr12 22666889 22666981 -121615508 + L1MC4 LINE L1 6614 6703 -1339 * 311 322 0 0 chr12 22666915 22667005 -121615484 - L1MC4 LINE L1 -1339 6703 6614 180 0 0 0 chr12 22667005 22667025 -121615464 + (TG)n Simple_repeat Simple_repeat 2 21 0 731 107 0 0 chr12 22667038 22667141 -121615348 - AluY SINE Alu -14 297 195 205 302 111 0 chr12 22668047 22668110 -121614379 + MIR3 SINE MIR 124 193 -15 255 186 17 68 chr12 22668207 22668266 -121614223 + L2 LINE L2 3217 3272 0 21 0 0 0 chr12 22668330 22668351 -121614138 + AT_rich Low_complexity Low_complexity 1 21 0 402 247 38 71 chr12 22669537 22670058 -121612431 + L1M4 LINE L1 2190 2828 -3318 668 243 79 23 chr12 22670064 22670241 -121612248 - MLT1E LTR MaLR -2 591 438 361 266 28 0 chr12 22670297 22670406 -121612083 - MLT1E LTR MaLR -467 126 15 2610 249 64 85 chr12 22670416 22671942 -121610547 + L1M4 LINE L1 2826 4319 -1827 180 0 0 0 chr12 22671944 22671964 -121610525 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 350 86 35 0 chr12 22671970 22672028 -121610461 - L1MA2 LINE L1 -22 6282 6223 3299 192 58 20 chr12 22672245 22673026 -121609463 - Tigger1 DNA MER2_type -441 1977 1168 4640 83 35 16 chr12 22673126 22673821 -121608668 + L1PA13 LINE L1 5452 6159 -4 752 208 0 6 chr12 22674506 22674679 -121607810 + GA-rich Low_complexity Low_complexity 1 172 0 342 369 45 0 chr12 22674733 22674912 -121607577 + L1M4 LINE L1 2959 3145 -3001 23 0 0 0 chr12 22675410 22675433 -121607056 + AT_rich Low_complexity Low_complexity 1 23 0 3154 34 13 0 chr12 22676035 22676416 -121606073 - L1PA5 LINE L1 -6 6148 5763 1236 157 8 30 chr12 22676805 22677041 -121605448 + L1MC1 LINE L1 5651 5881 -452 613 205 0 0 chr12 22677058 22677170 -121605319 + L1MC1 LINE L1 6205 6316 -17 22 0 0 0 chr12 22677241 22677263 -121605226 + AT_rich Low_complexity Low_complexity 1 22 0 1522 160 4 15 chr12 22677269 22677531 -121604958 + THE1C LTR MaLR 1 259 -116 184 352 84 0 chr12 22678235 22678306 -121604183 - L2 LINE L2 -39 3233 3157 315 200 62 0 chr12 22678544 22678609 -121603880 + L2 LINE L2 3245 3313 0 281 358 58 0 chr12 22679692 22679812 -121602677 - LTR16A LTR ERVL -323 127 1 315 0 0 0 chr12 22681764 22681799 -121600690 + (CAA)n Simple_repeat Simple_repeat 2 36 0 183 337 79 10 chr12 22682786 22682887 -121599602 - L2 LINE L2 -796 2518 2411 250 297 237 0 chr12 22683221 22683339 -121599150 - L2 LINE L2 -2 3311 3166 234 319 61 80 chr12 22683607 22683920 -121598569 + L1ME2 LINE L1 310 616 -5503 419 222 105 63 chr12 22684127 22684366 -121598123 + LTR16C LTR ERVL 234 482 -9 301 326 11 11 chr12 22684544 22684728 -121597761 + L1ME2 LINE L1 1026 1209 -4910 415 266 64 14 chr12 22684803 22685021 -121597468 + L1ME2 LINE L1 1306 1534 -4595 344 200 0 0 chr12 22685413 22685473 -121597016 - MER41A LTR ERV1 -9 545 486 5266 152 16 4 chr12 22685573 22686824 -121595665 - L1M1 LINE L1 -671 5631 4364 882 134 0 0 chr12 22686807 22686941 -121595548 - L1M1 LINE L1 -2289 3857 3724 * 2604 235 82 33 chr12 22686940 22688701 -121593788 + L1ME2 LINE L1 4298 6136 -11 281 262 49 93 chr12 22688706 22688931 -121593558 + L1MC4 LINE L1 7827 8041 -1 334 344 107 20 chr12 22691000 22691253 -121591236 - L2 LINE L2 -65 3207 2933 432 305 144 58 chr12 22691457 22692274 -121590215 - L2 LINE L2 -160 3112 2192 1902 164 0 0 chr12 22692416 22692708 -121589781 + AluSx SINE Alu 1 292 -20 232 125 0 0 chr12 22692711 22692743 -121589746 + (GGGGA)n Simple_repeat Simple_repeat 5 36 0 423 132 0 13 chr12 22692743 22692819 -121589670 + (GGAA)n Simple_repeat Simple_repeat 4 78 0 719 287 20 0 chr12 22693728 22693930 -121588559 - L2 LINE L2 -460 2854 2649 330 192 253 0 chr12 22694017 22694116 -121588373 - MIR SINE MIR -45 217 94 217 257 214 0 chr12 22695283 22695353 -121587136 - L2 LINE L2 -15 3257 3173 388 295 86 0 chr12 22699194 22699333 -121583156 + MIR SINE MIR 2 152 -110 33 25 0 0 chr12 22699335 22699375 -121583114 + AT_rich Low_complexity Low_complexity 1 40 0 409 317 79 18 chr12 22699375 22699703 -121582786 - L1ME LINE L1 -303 5818 5471 211 254 95 16 chr12 22699999 22700062 -121582427 - L2 LINE L2 -1 3312 3245 294 246 52 75 chr12 22700282 22700416 -121582073 - L1ME LINE L1 -1221 4925 4795 2519 228 66 37 chr12 22701019 22701805 -121580684 - L1ME2 LINE L1 -1 6163 5355 384 207 193 36 chr12 22701807 22701947 -121580542 + MLT1E2 LTR MaLR 3 164 -460 278 299 31 23 chr12 22701947 22702092 -121580397 + L1MA9 LINE L1 1356 1649 -5837 1668 254 78 12 chr12 22702759 22703576 -121578913 + L1MA9 LINE L1 1897 2775 -4721 632 74 0 0 chr12 22703573 22703654 -121578835 + L1PB1 LINE L1 5867 5947 -204 * 11838 216 60 30 chr12 22703650 22706409 -121576080 + L1MA9 LINE L1 2989 5942 -1789 2517 156 21 13 chr12 22706409 22706883 -121575606 + L1MA4 LINE L1 5812 6289 -11 11838 216 60 30 chr12 22706883 22708729 -121573760 + L1MA9 LINE L1 5942 7731 0 1421 250 95 41 chr12 22708733 22709217 -121573272 + MLT1E2 LTR MaLR 117 626 0 4504 257 67 52 chr12 22709217 22709327 -121573162 - L1M4 LINE L1 -787 5359 5252 1493 129 40 0 chr12 22709327 22709575 -121572914 - L1MA2 LINE L1 0 6304 6047 4504 257 67 52 chr12 22709575 22711611 -121570878 - L1M4 LINE L1 -894 5252 3181 321 230 35 9 chr12 22711600 22711713 -121570776 - L1M4 LINE L1 -3204 2942 2827 * 533 222 8 8 chr12 22711735 22711861 -121570628 - L1ME1 LINE L1 -6 6160 6035 2306 113 0 0 chr12 22712326 22712626 -121569863 - AluSx SINE Alu -4 308 9 365 292 85 0 chr12 22712752 22712882 -121569607 + MIR SINE MIR 109 249 -13 8664 100 45 0 chr12 22713013 22714245 -121568244 + HSMAR1 DNA Mariner 1 1287 0 331 223 60 130 chr12 22715080 22715264 -121567225 + MER5A DNA MER1_type 10 180 -9 256 362 79 0 chr12 22715540 22715692 -121566797 + L2 LINE L2 3145 3308 -5 22 70 0 0 chr12 22716383 22716426 -121566063 + AT_rich Low_complexity Low_complexity 1 43 0 431 174 79 9 chr12 22716557 22716671 -121565818 - MLT1A1 LTR MaLR -215 150 24 6089 150 64 15 chr12 22716671 22717261 -121565228 + L1MA5 LINE L1 4130 4690 -1613 1911 168 0 3 chr12 22717261 22717546 -121564943 + AluSx SINE Alu 1 284 -28 189 0 0 0 chr12 22717546 22717567 -121564922 + (CA)n Simple_repeat Simple_repeat 2 22 0 6089 150 64 15 chr12 22717567 22718391 -121564098 + L1MA5 LINE L1 4689 5586 -717 * 36190 101 8 10 chr12 22718386 22724555 -121557934 + L1PA6 LINE L1 2 6154 0 3442 144 21 72 chr12 22724555 22725314 -121557175 + L1MA5 LINE L1 5572 6295 -5 23 33 0 0 chr12 22725832 22725862 -121556627 + AT_rich Low_complexity Low_complexity 1 30 0 667 295 133 50 chr12 22728705 22729229 -121553260 - L2 LINE L2 0 3313 2748 434 244 42 17 chr12 22729667 22729786 -121552703 + MER5B DNA MER1_type 1 122 -56 441 247 21 0 chr12 22729855 22729952 -121552537 - MLT1J1 LTR MaLR -315 131 33 22 35 0 0 chr12 22730090 22730119 -121552370 + AT_rich Low_complexity Low_complexity 1 29 0 1930 130 0 0 chr12 22732159 22732428 -121550061 + AluSx SINE Alu 1 269 -43 763 249 30 0 chr12 22782726 22782895 -121499594 + MIR SINE MIR 62 235 -27 212 318 63 0 chr12 22782980 22783043 -121499446 + MIR3 SINE MIR 135 201 -7 1001 188 24 43 chr12 22783085 22783292 -121499197 - MER58A DNA MER1_type 0 224 22 194 274 0 32 chr12 22783535 22783597 -121498892 - MIR3 SINE MIR -21 187 128 590 233 195 19 chr12 22784352 22784562 -121497927 - MIR SINE MIR -3 259 13 321 170 0 0 chr12 22784568 22784621 -121497868 - L2 LINE L2 -1 3271 3219 183 238 24 0 chr12 22784589 22784631 -121497858 - MIR SINE MIR -16 246 204 * 344 333 37 30 chr12 22784728 22784863 -121497626 + L2 LINE L2 3137 3272 0 1864 137 34 17 chr12 22785504 22785797 -121496692 + AluSx SINE Alu 1 298 -14 261 188 0 0 chr12 22785849 22785897 -121496592 + L1MC4 LINE L1 6656 6703 -1339 295 213 31 8 chr12 22785903 22786030 -121496459 + (TA)n Simple_repeat Simple_repeat 1 130 0 2443 43 0 0 chr12 22786090 22786395 -121496094 + AluY SINE Alu 1 305 0 2128 122 0 0 chr12 22786408 22786719 -121495770 - AluSx SINE Alu -1 311 1 1408 103 15 0 chr12 22787226 22787421 -121495068 - L1PA15 LINE L1 -13 6152 5955 24 67 0 0 chr12 22787440 22787485 -121495004 + AT_rich Low_complexity Low_complexity 1 45 0 449 298 53 7 chr12 22788541 22788848 -121493641 - L1M4b LINE L1 -5119 1828 1385 211 305 211 0 chr12 22789397 22789525 -121492964 + L2 LINE L2 3104 3258 -55 420 20 0 0 chr12 22789719 22789768 -121492721 + (CA)n Simple_repeat Simple_repeat 2 50 0 2083 113 7 13 chr12 22790317 22790618 -121491871 - AluSx SINE Alu -13 299 1 2431 81 0 0 chr12 22790637 22790935 -121491554 + AluSg SINE Alu 1 298 -12 189 0 0 0 chr12 22791621 22791642 -121490847 + (TA)n Simple_repeat Simple_repeat 1 21 0 499 352 20 10 chr12 22791822 22792021 -121490468 - MIR SINE MIR -15 247 47 234 0 0 0 chr12 22792826 22792852 -121489637 + (A)n Simple_repeat Simple_repeat 1 26 0 1549 191 0 38 chr12 22792852 22793171 -121489318 + AluJo SINE Alu 1 307 -5 282 257 0 71 chr12 22794996 22795122 -121487367 + L1ME4a LINE L1 5481 5594 -527 412 273 9 9 chr12 22795197 22795307 -121487182 + MIR SINE MIR 123 232 -30 185 340 130 12 chr12 22795899 22796061 -121486428 + MIR SINE MIR 55 235 -27 234 258 102 24 chr12 22796061 22796228 -121486261 + L1ME4a LINE L1 5942 6121 0 736 191 0 0 chr12 22796305 22796436 -121486053 + FLAM_C SINE Alu 1 131 -2 22 80 0 0 chr12 22796478 22796528 -121485961 + AT_rich Low_complexity Low_complexity 1 50 0 456 218 54 57 chr12 22796892 22797172 -121485317 + L1MC5 LINE L1 7493 7771 -190 1030 179 71 9 chr12 22798309 22798521 -121483968 + MER8 DNA MER2_type 13 237 -2 14232 129 38 7 chr12 22798636 22799406 -121483083 - Tigger1 DNA MER2_type 0 2418 1673 2010 81 0 0 chr12 22799406 22799678 -121482811 - AluY SINE Alu 0 307 36 14232 129 38 7 chr12 22799678 22801251 -121481238 - Tigger1 DNA MER2_type -745 1673 1 30 100 0 0 chr12 22801554 22801654 -121480835 + AT_rich Low_complexity Low_complexity 1 100 0 315 194 28 14 chr12 22802475 22802547 -121479942 + L1MCa LINE L1 168 240 -6324 809 224 43 111 chr12 22802595 22803134 -121479355 + L1MCa LINE L1 64 565 -5480 1160 254 68 33 chr12 22803230 22803729 -121478760 + L1MCa LINE L1 571 1068 -4977 2809 148 60 24 chr12 22803735 22804314 -121478175 - LTR36 LTR ERV1 -1 610 11 2444 94 0 0 chr12 22804315 22804624 -121477865 + AluSg SINE Alu 1 309 -1 260 280 30 30 chr12 22804711 22804843 -121477646 - LTR36-int LTR ERV1 -52 8068 7937 316 191 44 0 chr12 22805157 22805225 -121477264 - MER49 LTR ERV1 -163 760 690 880 166 83 48 chr12 22805245 22805474 -121477015 - LTR36-int LTR ERV1 -181 6150 5914 10510 160 32 68 chr12 22805487 22805536 -121476953 - LTR36-int LTR ERV1 -455 5422 5373 1910 150 7 33 chr12 22805536 22805836 -121476653 + AluSx SINE Alu 1 292 -20 10510 160 32 68 chr12 22805836 22808388 -121474101 - LTR36-int LTR ERV1 -504 5373 3023 2637 182 17 36 chr12 22808388 22808964 -121473525 + L1M1 LINE L1 129 693 -6872 591 126 42 42 chr12 22809010 22809129 -121473360 - LTR36-int LTR ERV1 -2392 1893 1775 310 263 75 23 chr12 22809203 22809336 -121473153 - LTR36-int LTR ERV1 -2724 1561 1422 2173 110 3 0 chr12 22809632 22809924 -121472565 + AluSx SINE Alu 1 293 -19 588 287 25 42 chr12 22809998 22810235 -121472254 - LTR36-int LTR ERV1 -1439 347 115 3131 145 61 20 chr12 22810344 22810931 -121471558 - LTR36 LTR ERV1 0 611 1 2736 190 198 62 chr12 22810931 22811142 -121471347 + L1MCa LINE L1 1072 1253 -5463 2459 64 7 0 chr12 22811142 22811438 -121471051 - AluSg SINE Alu -12 298 1 2736 190 198 62 chr12 22811438 22812698 -121469791 + L1MCa LINE L1 1253 2764 -3952 412 303 71 55 chr12 22812728 22813175 -121469314 - MLT1H1 LTR MaLR -4 545 36 584 250 60 12 chr12 22813283 22813451 -121469038 + MIR SINE MIR 87 262 0 354 337 48 18 chr12 22813448 22813614 -121468875 + MIR3 SINE MIR 32 202 -6 * 683 186 8 8 chr12 22813801 22813930 -121468559 - FLAM_C SINE Alu -14 129 1 396 77 231 0 chr12 22814074 22814139 -121468350 + MADE1 DNA Mariner 1 80 0 219 326 14 83 chr12 22814187 22814331 -121468158 - L2 LINE L2 -457 2857 2724 888 266 107 15 chr12 22814936 22815339 -121467150 + LTR16A LTR ERVL 1 440 -10 261 0 0 0 chr12 22815585 22815614 -121466875 + (T)n Simple_repeat Simple_repeat 1 29 0 1983 112 11 11 chr12 22816211 22816496 -121465993 + AluSx SINE Alu 1 285 -27 342 0 0 0 chr12 22816496 22816534 -121465955 + (CA)n Simple_repeat Simple_repeat 2 39 0 478 239 80 14 chr12 22816593 22816731 -121465758 - MIR SINE MIR -62 200 54 484 319 33 16 chr12 22816782 22816964 -121465525 + MER5A DNA MER1_type 1 185 -4 427 301 26 39 chr12 22817197 22817353 -121465136 + MER5B DNA MER1_type 25 178 0 2051 134 151 3 chr12 22819768 22820140 -121462349 + MSTA LTR MaLR 2 428 0 232 247 49 62 chr12 22820886 22820967 -121461522 - L2 LINE L2 -2 3311 3232 427 328 29 18 chr12 22822132 22822303 -121460186 + L2 LINE L2 62 234 -3080 649 291 109 53 chr12 22822355 22822459 -121460030 + L2 LINE L2 2308 2405 -909 1787 151 67 20 chr12 22822459 22822817 -121459672 + THE1C LTR MaLR 1 375 0 649 291 109 53 chr12 22822817 22823180 -121459309 + L2 LINE L2 2405 2801 -513 2104 150 0 0 chr12 22823349 22823643 -121458846 - AluSx SINE Alu -18 294 1 288 275 83 25 chr12 22823681 22823801 -121458688 + L2 LINE L2 3185 3311 -2 2318 99 0 0 chr12 22824827 22825119 -121457370 - AluSc SINE Alu -17 292 1 1770 156 39 0 chr12 22825121 22825404 -121457085 - AluJb SINE Alu -17 295 2 222 276 25 98 chr12 22826281 22826444 -121456045 + L2 LINE L2 2906 3056 -216 206 333 50 0 chr12 22826525 22826585 -121455904 + L2 LINE L2 3251 3313 0 234 0 0 0 chr12 22826718 22826744 -121455745 + (TA)n Simple_repeat Simple_repeat 2 27 0 2506 51 0 0 chr12 22826744 22827040 -121455449 - AluY SINE Alu -15 296 1 16668 197 27 40 chr12 22828050 22832753 -121449736 - L1PA13 LINE L1 -1 7600 3342 2883 10 0 0 chr12 22832753 22833065 -121449424 + AluYb8 SINE Alu 1 312 -6 16668 197 27 40 chr12 22833065 22836367 -121446122 - L1PA13 LINE L1 -4259 3342 1 195 307 22 80 chr12 22837465 22837602 -121444887 + L2 LINE L2 3141 3269 -3 3339 141 46 5 chr12 22837837 22838437 -121444052 - Tigger1 DNA MER2_type -1 2417 1793 1910 128 37 35 chr12 22838437 22838811 -121443678 - THE1C LTR MaLR 0 375 1 * 5730 117 20 13 chr12 22838811 22839746 -121442743 - Tigger1 DNA MER2_type -621 1797 856 1118 162 5 0 chr12 22839765 22839963 -121442526 + L1PB1 LINE L1 2 200 -6663 511 107 0 0 chr12 22839963 22840038 -121442451 + L1PB1 LINE L1 634 708 -6155 6605 169 24 7 chr12 22840038 22840115 -121442374 + L1PB1 LINE L1 4530 4604 -2263 2423 92 0 0 chr12 22840115 22840410 -121442079 + AluSc SINE Alu 1 295 -14 6605 169 24 7 chr12 22840410 22842636 -121439853 + L1PB1 LINE L1 4604 6867 0 4648 152 15 42 chr12 22842688 22843609 -121438880 - Tigger1 DNA MER2_type -1522 896 1 21 57 0 0 chr12 22843749 22843784 -121438705 + AT_rich Low_complexity Low_complexity 1 35 0 979 192 67 67 chr12 22844053 22844135 -121438354 + L1 LINE L1 2879 2960 -3186 2214 112 0 3 chr12 22844135 22844430 -121438059 + AluSx SINE Alu 2 295 -17 979 192 67 67 chr12 22844430 22844733 -121437756 + L1 LINE L1 2959 3264 -2882 425 293 178 11 chr12 22844734 22844925 -121437564 + MIR SINE MIR 36 258 -4 855 161 0 0 chr12 22845214 22845338 -121437151 - FLAM_C SINE Alu -19 124 1 745 121 26 0 chr12 22845392 22845508 -121436981 + FLAM_C SINE Alu 18 136 -7 3094 96 18 4 chr12 22846266 22846723 -121435766 + LTR8 LTR ERV1 8 470 -221 639 155 9 9 chr12 22846840 22846956 -121435533 + LTR8 LTR ERV1 469 584 -107 191 312 173 35 chr12 22847118 22847320 -121435169 + L2 LINE L2 2037 2266 -1048 2346 74 0 7 chr12 22847393 22847689 -121434800 - AluSx SINE Alu -1 311 18 4527 161 47 5 chr12 22848273 22849066 -121433423 - LTR1B LTR ERV1 0 826 1 259 238 16 32 chr12 22850283 22850346 -121432143 - L2 LINE L2 -1 3271 3210 1944 139 23 13 chr12 22851240 22851542 -121430947 - AluSx SINE Alu -7 305 1 326 333 82 58 chr12 22851706 22852000 -121430489 + L2 LINE L2 333 633 -2681 2206 114 0 10 chr12 22852697 22852996 -121429493 - AluSx SINE Alu -16 296 1 293 392 39 15 chr12 22853184 22853388 -121429101 - MIR SINE MIR -46 216 8 1917 179 0 0 chr12 22853431 22853738 -121428751 + AluJb SINE Alu 1 307 -5 3239 191 50 42 chr12 22853828 22854647 -121427842 - LTR1B LTR ERV1 0 826 1 514 313 30 12 chr12 22854962 22855128 -121427361 + L3 LINE CR1 988 1156 -421 295 210 0 16 chr12 22855249 22855311 -121427178 + L3 LINE CR1 1229 1289 -288 216 0 0 0 chr12 22855330 22855354 -121427135 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 618 347 25 12 chr12 22855363 22855605 -121426884 + MIR SINE MIR 5 249 -13 1175 130 0 0 chr12 22855613 22855774 -121426715 - AluSg/x SINE Alu -18 292 132 2220 109 3 0 chr12 22855774 22856067 -121426422 - AluSx SINE Alu -18 294 1 270 353 0 0 chr12 22856118 22856203 -121426286 + L3 LINE CR1 1491 1575 -2 26 30 0 0 chr12 22856702 22856735 -121425754 + AT_rich Low_complexity Low_complexity 1 33 0 694 181 0 0 chr12 22856736 22856852 -121425637 - AluJb SINE Alu -196 116 1 998 161 33 0 chr12 22857162 22857342 -121425147 + THE1B LTR MaLR 1 186 -178 250 108 0 0 chr12 22857353 22857390 -121425099 + THE1B LTR MaLR 328 364 0 1651 95 0 0 chr12 22857390 22857631 -121424858 + THE1A-int LTR MaLR 1 241 -1339 6913 91 11 0 chr12 22857642 22858600 -121423889 + THE1A-int LTR MaLR 606 1574 -6 2037 157 14 3 chr12 22858602 22858953 -121423536 + THE1A LTR MaLR 1 355 0 25 31 0 0 chr12 22859088 22859120 -121423369 + AT_rich Low_complexity Low_complexity 1 32 0 2135 188 98 82 chr12 22859541 22860025 -121422464 - LTR8A LTR ERV1 -4 723 223 2385 132 5 24 chr12 22860025 22860396 -121422093 - THE1B LTR MaLR 0 364 1 2135 188 98 82 chr12 22860396 22860592 -121421897 - LTR8A LTR ERV1 -504 223 32 187 271 21 21 chr12 22861470 22861518 -121420971 + MIR SINE MIR 98 145 -63 203 61 30 0 chr12 22861648 22861681 -121420808 + (TC)n Simple_repeat Simple_repeat 1 34 0 226 301 120 6 chr12 22862068 22862251 -121420238 - L1ME4a LINE L1 -72 6049 5846 1963 142 0 14 chr12 22862348 22862644 -121419845 + AluJb SINE Alu 9 300 -12 22 35 0 0 chr12 22862689 22862718 -121419771 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr12 22862744 22862768 -121419721 + AT_rich Low_complexity Low_complexity 1 24 0 7199 51 7 0 chr12 22865093 22866462 -121416027 - L1PA7 LINE L1 -2 6152 4780 5570 83 0 6 chr12 22866462 22867265 -121415224 + L1PA7 LINE L1 3974 4771 -1375 216 0 0 0 chr12 22867346 22867370 -121415119 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1029 262 88 30 chr12 22868364 22869008 -121413481 + L1M4 LINE L1 4226 4907 -1239 40466 36 24 2 chr12 22869023 22875065 -121407424 + L1PA3 LINE L1 1 6567 -20 3003 42 3 16 chr12 22875065 22875450 -121407039 + L1PA5 LINE L1 5770 6149 -5 40466 36 24 2 chr12 22875450 22875472 -121407017 + L1PA3 LINE L1 6567 6587 0 530 288 48 33 chr12 22875492 22875888 -121406601 + L1M4 LINE L1 4932 5333 -813 3482 167 46 15 chr12 22875949 22876621 -121405868 + L1M1 LINE L1 16 708 -6857 6136 96 29 50 chr12 22876622 22876710 -121405779 + L1M1 LINE L1 2110 2198 -5367 2102 122 0 7 chr12 22876710 22877030 -121405459 - AluSx SINE Alu 0 318 1 6136 96 29 50 chr12 22877030 22877918 -121404571 + L1M1 LINE L1 2198 3103 -4462 2431 78 7 0 chr12 22877918 22878225 -121404264 + AluY SINE Alu 1 309 -2 6136 96 29 50 chr12 22878225 22878316 -121404173 + L1M1 LINE L1 3103 3156 -4409 2022 133 3 3 chr12 22878316 22878602 -121403887 + AluSx SINE Alu 1 286 -26 6136 96 29 50 chr12 22878602 22878673 -121403816 + L1M1 LINE L1 3156 3227 -4338 28946 110 11 67 chr12 22878684 22885206 -121397283 + L1PA7 LINE L1 12 6153 -1 6123 230 52 28 chr12 22885203 22887596 -121394893 + L1ME1 LINE L1 3326 5784 -382 * 1869 209 90 11 chr12 22887596 22888064 -121394425 - MLT1D LTR MaLR 0 505 1 6123 230 52 28 chr12 22888064 22888433 -121394056 + L1ME1 LINE L1 5784 6143 -23 298 243 0 0 chr12 22888499 22888569 -121393920 - L1ME LINE L1 -617 5547 5478 * 313 159 16 16 chr12 22888560 22888623 -121393866 + L1ME LINE L1 5528 5590 -580 852 285 89 47 chr12 22888630 22889125 -121393364 - MLT1F LTR MaLR -11 531 16 342 241 0 117 chr12 22889334 22889479 -121393010 - MLT1F-int LTR MaLR -171 1200 1073 2054 129 0 3 chr12 22889551 22889838 -121392651 - AluSx SINE Alu -21 291 6 264 304 55 17 chr12 22890491 22890672 -121391817 - MLT1F-int LTR MaLR -832 539 352 248 224 0 15 chr12 22890771 22890838 -121391651 - MLT1F-int LTR MaLR -1301 70 5 349 234 123 58 chr12 22890842 22891087 -121391402 - MLT1H1 LTR MaLR 0 555 323 252 310 63 7 chr12 22891304 22891446 -121391043 + HAL1b LINE L1 1187 1336 -12 2027 153 31 0 chr12 22892068 22892362 -121390127 - AluSx SINE Alu -9 303 1 22 0 0 0 chr12 22892521 22892543 -121389946 + AT_rich Low_complexity Low_complexity 1 22 0 283 332 109 26 chr12 22892562 22892791 -121389698 - MIR SINE MIR -12 250 3 439 285 123 47 chr12 22893503 22893911 -121388578 - Charlie8 DNA MER1_type -2143 274 1 4917 33 0 2 chr12 22894462 22895039 -121387450 - L1PA5 LINE L1 -11 6143 5568 418 285 90 62 chr12 22895126 22895382 -121387107 - L2 LINE L2 -20 3293 3031 1642 231 112 50 chr12 22895453 22895875 -121386614 + L1ME1 LINE L1 5458 5937 -229 2065 139 7 0 chr12 22895875 22896170 -121386319 + AluSx SINE Alu 2 298 -14 1642 231 112 50 chr12 22896170 22896410 -121386079 + L1ME1 LINE L1 5937 6161 -5 2121 134 0 0 chr12 22897168 22897467 -121385022 - AluSx SINE Alu -13 299 1 742 134 8 8 chr12 22897492 22897619 -121384870 + THE1C-int LTR MaLR 1454 1580 0 2571 119 0 11 chr12 22897619 22897998 -121384491 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr12 22899754 22899782 -121382707 + AT_rich Low_complexity Low_complexity 1 28 0 2161 106 20 0 chr12 22899785 22900086 -121382403 + AluSp SINE Alu 1 307 -6 421 301 35 38 chr12 22900113 22900429 -121382060 + L1MEd LINE L1 943 1257 -4862 22 0 0 0 chr12 22900475 22900497 -121381992 + AT_rich Low_complexity Low_complexity 1 22 0 230 70 23 23 chr12 22900847 22900890 -121381599 + L1ME2 LINE L1 4989 5031 -1115 24 32 0 0 chr12 22900940 22900971 -121381518 + AT_rich Low_complexity Low_complexity 1 31 0 497 91 0 0 chr12 22900979 22901056 -121381433 - L1MA7 LINE L1 -2 6289 6213 2667 206 105 35 chr12 22901057 22901875 -121380614 + L1ME2 LINE L1 5022 5781 -383 1868 119 129 78 chr12 22901875 22902286 -121380203 - MSTB1 LTR MaLR 0 432 1 2126 116 0 35 chr12 22902288 22902620 -121379869 + AluSx SINE Alu 1 312 0 2667 206 105 35 chr12 22902620 22902751 -121379738 + L1ME2 LINE L1 5781 5901 -263 2496 62 0 3 chr12 22902751 22903056 -121379433 - AluY SINE Alu -7 304 1 2667 206 105 35 chr12 22903056 22903172 -121379317 + L1ME2 LINE L1 5901 6155 -9 592 204 25 45 chr12 22903187 22903344 -121379145 + L1MC4 LINE L1 5425 5578 -2230 1398 253 60 21 chr12 22903380 22903487 -121379002 + L1MC4 LINE L1 7461 7562 -480 2428 71 0 3 chr12 22903487 22903797 -121378692 + AluY SINE Alu 1 309 -2 1398 253 60 21 chr12 22903797 22904219 -121378270 + L1MC4 LINE L1 7562 8011 -31 1873 176 7 0 chr12 22904230 22904526 -121377963 - AluJb SINE Alu -14 298 1 25 65 0 0 chr12 22904535 22904581 -121377908 + AT_rich Low_complexity Low_complexity 1 46 0 1505 98 0 69 chr12 22905314 22905560 -121376929 + MER30 DNA MER1_type 1 229 -1 2928 262 51 52 chr12 22906090 22907214 -121375275 + HsTC2 DNA Tc2 7 1129 -769 25 0 0 0 chr12 22907261 22907286 -121375203 + AT_rich Low_complexity Low_complexity 1 25 0 678 287 33 37 chr12 22907304 22907733 -121374756 - L1M4 LINE L1 -1569 4577 4151 552 30 0 0 chr12 22907789 22907855 -121374634 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 2347 80 7 0 chr12 22907873 22908173 -121374316 - AluY SINE Alu -9 302 1 234 286 50 8 chr12 22908325 22908444 -121374045 - L1M4 LINE L1 -2231 3915 3792 2552 251 74 27 chr12 22908846 22909109 -121373380 + L1ME1 LINE L1 3091 3340 -2806 1601 163 58 34 chr12 22909109 22909403 -121373086 + AluSx SINE Alu 1 301 -11 2552 251 74 27 chr12 22909403 22910217 -121372272 + L1ME1 LINE L1 3340 4219 -1927 783 116 0 36 chr12 22910275 22910404 -121372085 + L1MA1 LINE L1 6014 6139 -163 7624 26 0 1 chr12 22910404 22911737 -121370752 + L1PA4 LINE L1 4821 6152 -3 1236 71 18 6 chr12 22911762 22911932 -121370557 + L1MA1 LINE L1 6131 6302 0 341 194 107 0 chr12 22911950 22912053 -121370436 + L1ME1 LINE L1 5158 5271 -875 2286 231 98 28 chr12 22912187 22912909 -121369580 + L1ME1 LINE L1 5389 6161 -5 9248 168 72 83 chr12 22913177 22914884 -121367605 + L1MC1 LINE L1 6 1730 -4696 2084 145 30 6 chr12 22914884 22915249 -121367240 - THE1C LTR MaLR 0 375 2 9248 168 72 83 chr12 22915249 22916116 -121366373 + L1MC1 LINE L1 1730 2605 -3821 1552 167 28 31 chr12 22916116 22916404 -121366085 + AluJo SINE Alu 12 298 -14 9248 168 72 83 chr12 22916404 22917012 -121365477 + L1MC1 LINE L1 2605 3295 -3131 1800 186 0 0 chr12 22917012 22917313 -121365176 + AluJb SINE Alu 1 301 -11 9248 168 72 83 chr12 22917313 22917400 -121365089 + L1MC1 LINE L1 3295 3381 -3045 5975 142 17 47 chr12 22917387 22918531 -121363958 + L1MC1 LINE L1 5495 6602 -11 * 21 36 0 0 chr12 22918755 22918783 -121363706 + AT_rich Low_complexity Low_complexity 1 28 0 226 307 30 40 chr12 22918838 22918939 -121363550 + MIR3 SINE MIR 78 177 -31 803 236 66 84 chr12 22919232 22919466 -121363023 + L1M1 LINE L1 2718 2955 -4791 794 173 0 0 chr12 22919466 22919599 -121362890 + FLAM_C SINE Alu 1 133 0 803 236 66 84 chr12 22919599 22920059 -121362430 + L1M1 LINE L1 2955 3473 -4273 369 260 0 0 chr12 22920093 22920166 -121362323 + Tigger3(Golem) DNA MER2_type 2 74 -2955 * 2553 132 63 5 chr12 22920163 22920589 -121361900 + Tigger3(Golem) DNA MER2_type 2577 3027 -2 679 258 41 38 chr12 22920589 22920880 -121361609 + L1MEc LINE L1 2211 2502 -3894 1079 252 89 33 chr12 22920999 22921454 -121361035 - MER76 LTR ERV -34 654 101 2312 171 31 19 chr12 22921454 22921875 -121360614 + MSTB LTR MaLR 1 426 0 1079 252 89 33 chr12 22921875 22921983 -121360506 - MER76 LTR ERV -587 101 1 894 271 148 7 chr12 22922020 22922135 -121360354 + L1MEc LINE L1 2551 2648 -3567 2395 164 16 30 chr12 22922135 22922574 -121359915 + Tigger2a DNA MER2_type 1 433 -1 894 271 148 7 chr12 22922574 22922897 -121359592 + L1MEc LINE L1 2648 3051 -3164 3475 160 40 18 chr12 22923215 22923872 -121358617 - LTR51 LTR ERV1 0 671 1 276 233 0 17 chr12 22923872 22923932 -121358557 - MER106B DNA MER1_type -1000 59 1 687 303 26 34 chr12 22923960 22924194 -121358295 - HERVL LTR ERVL -1102 4552 4321 671 350 43 12 chr12 22924270 22924527 -121357962 + ERVL LTR ERVL 4093 4357 -1407 2481 73 3 6 chr12 22927394 22927708 -121354781 + AluSp SINE Alu 1 313 0 243 0 0 0 chr12 22927927 22927954 -121354535 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 816 161 15 0 chr12 22927960 22928097 -121354392 - U1 snRNA snRNA 0 165 27 414 0 0 0 chr12 22931015 22931061 -121351428 + (CA)n Simple_repeat Simple_repeat 2 47 0 855 201 34 57 chr12 22931261 22931470 -121351019 - MER20 DNA MER1_type -9 210 7 800 133 0 0 chr12 22931637 22931757 -121350732 - AluSg/x SINE Alu -1 308 189 21 36 0 0 chr12 22932129 22932157 -121350332 + AT_rich Low_complexity Low_complexity 1 28 0 202 231 0 0 chr12 22932893 22932932 -121349557 + (TATG)n Simple_repeat Simple_repeat 4 42 0 28 0 0 0 chr12 22933571 22933599 -121348890 + AT_rich Low_complexity Low_complexity 1 28 0 236 264 139 0 chr12 22934919 22934991 -121347498 + MIR3 SINE MIR 124 205 -3 267 133 0 0 chr12 22935684 22935729 -121346760 + (GA)n Simple_repeat Simple_repeat 2 46 0 231 258 91 15 chr12 22936342 22936408 -121346081 - MER5A DNA MER1_type 0 189 119 563 198 0 0 chr12 22936746 22936857 -121345632 - L1MA9 LINE L1 -4 6308 6198 202 250 0 52 chr12 22937827 22937923 -121344566 + A-rich Low_complexity Low_complexity 4 94 0 616 151 0 0 chr12 22938133 22938226 -121344263 + AluJ/FLAM SINE Alu 6 98 -214 293 282 146 45 chr12 22939101 22939477 -121343012 + HAL1 LINE L1 672 1085 -1422 304 297 162 66 chr12 22939490 22940126 -121342363 + HAL1 LINE L1 1811 2507 0 22 70 0 0 chr12 22940126 22940169 -121342320 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr12 22940310 22940334 -121342155 + AT_rich Low_complexity Low_complexity 1 24 0 2199 104 30 0 chr12 22940355 22940654 -121341835 + AluSg SINE Alu 1 308 -2 822 258 118 44 chr12 22941026 22941748 -121340741 + L1M4 LINE L1 4540 5314 -832 376 344 52 9 chr12 22941763 22941993 -121340496 + L1ME LINE L1 5257 5496 -666 227 283 159 9 chr12 22942002 22942115 -121340374 + L1ME LINE L1 5510 5639 -482 243 281 63 143 chr12 22942124 22942487 -121340002 + L2 LINE L2 2973 3306 -7 282 238 78 25 chr12 22942500 22942672 -121339817 + L1ME LINE L1 5720 5813 -357 3741 180 98 30 chr12 22942861 22943229 -121339260 - MER21B LTR ERV1 0 863 522 2315 165 23 0 chr12 22943229 22943623 -121338866 + MER57A LTR ERV1 1 403 0 3741 180 98 30 chr12 22943623 22944060 -121338429 - MER21B LTR ERV1 -341 522 3 2087 111 3 13 chr12 22944205 22944503 -121337986 - AluSx SINE Alu -17 295 1 1576 164 68 180 chr12 22945085 22945861 -121336628 + LTR8A LTR ERV1 32 720 -7 327 377 31 21 chr12 22945958 22946149 -121336340 - L2 LINE L2 -214 3058 2866 197 342 13 0 chr12 22946495 22946571 -121335918 - L2 LINE L2 -901 2413 2337 249 283 139 6 chr12 22946646 22946812 -121335677 - L2 LINE L2 -1228 2086 1899 500 328 41 6 chr12 22947302 22947473 -121335016 - MIR SINE MIR -71 191 15 957 257 152 19 chr12 22947800 22948115 -121334374 - L2 LINE L2 0 3313 2957 402 332 47 14 chr12 22948400 22948611 -121333878 + MLT1J2 LTR MaLR 233 450 0 694 353 98 38 chr12 22948732 22949257 -121333232 + L2 LINE L2 2715 3272 0 828 257 23 0 chr12 22950024 22950199 -121332290 + MIR SINE MIR 59 237 -25 296 48 24 0 chr12 22950217 22950259 -121332230 + (CAT)n Simple_repeat Simple_repeat 3 45 0 2042 129 7 0 chr12 22950539 22950826 -121331663 + AluSx SINE Alu 6 294 -18 1968 138 0 0 chr12 22950828 22951104 -121331385 + AluSx SINE Alu 1 276 -36 225 0 0 0 chr12 22951105 22951130 -121331359 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 977 109 0 141 chr12 22951130 22951353 -121331136 + AluSg/x SINE Alu 128 312 0 23 78 0 0 chr12 22951650 22951701 -121330788 + AT_rich Low_complexity Low_complexity 1 51 0 260 336 10 0 chr12 22953714 22953818 -121328671 + GA-rich Low_complexity Low_complexity 2 106 0 25 65 0 0 chr12 22954559 22954605 -121327884 + AT_rich Low_complexity Low_complexity 1 46 0 267 133 0 0 chr12 22955106 22955151 -121327338 + (TA)n Simple_repeat Simple_repeat 2 46 0 481 208 81 52 chr12 22956394 22956567 -121325922 - L1ME LINE L1 -423 5698 5521 28 0 0 0 chr12 22956780 22956808 -121325681 + AT_rich Low_complexity Low_complexity 1 28 0 1299 137 5 10 chr12 22956809 22957013 -121325476 - AluSg/x SINE Alu -18 294 92 312 136 0 0 chr12 22957013 22957057 -121325432 - Alu SINE Alu -258 44 1 1415 233 33 35 chr12 22957322 22957747 -121324742 + MLT1C LTR MaLR 42 465 -2 881 279 38 32 chr12 22958011 22958351 -121324138 + MER93a LTR ERV1 61 402 0 494 257 47 0 chr12 22958351 22958494 -121323995 - MER63 DNA MER1_type -56 780 5 495 286 33 29 chr12 22958770 22959011 -121323478 - HAL1b LINE L1 -922 426 185 198 0 0 0 chr12 22959425 22959447 -121323042 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2152 113 3 0 chr12 22959454 22959736 -121322753 - AluSc SINE Alu -26 283 1 2271 83 6 19 chr12 22959785 22960099 -121322390 + AluSg SINE Alu 1 310 0 267 339 73 9 chr12 22960999 22961108 -121321381 - L2 LINE L2 -14 3258 3143 2308 103 0 0 chr12 22961266 22961566 -121320923 + AluSg SINE Alu 1 300 -10 530 294 65 85 chr12 22961616 22961827 -121320662 - L2 LINE L2 -644 2670 2456 1909 170 3 0 chr12 22961827 22962133 -121320356 + AluJo SINE Alu 1 307 -5 530 294 65 85 chr12 22962133 22962380 -121320109 - L2 LINE L2 -858 2456 2221 300 189 45 9 chr12 22963571 22963682 -121318807 + (TA)n Simple_repeat Simple_repeat 2 116 0 2310 58 0 0 chr12 22964055 22964329 -121318160 - AluY SINE Alu -1 310 37 736 257 125 21 chr12 22964437 22964717 -121317772 - LTR50 LTR ERVL -486 309 1 1263 268 100 35 chr12 22964719 22965178 -121317311 - L2 LINE L2 -657 2657 2169 1218 112 22 0 chr12 22965178 22965356 -121317133 + AluSc SINE Alu 128 309 0 431 290 65 0 chr12 22965356 22965494 -121316995 - L2 LINE L2 -1256 2058 1912 939 210 46 37 chr12 22965500 22965848 -121316641 + HAL1 LINE L1 1280 1630 -877 338 247 93 26 chr12 22966159 22966283 -121316206 + MIR SINE MIR 37 166 -62 29 60 0 0 chr12 22966420 22966470 -121316019 + AT_rich Low_complexity Low_complexity 1 50 0 2268 115 0 0 chr12 22966470 22966765 -121315724 + AluSx SINE Alu 1 295 -17 1324 245 162 17 chr12 22966769 22967361 -121315128 - HsTC2c DNA Tc2 -51 678 1 259 200 17 17 chr12 22967515 22967575 -121314914 + (TG)n Simple_repeat Simple_repeat 2 61 0 25 51 0 0 chr12 22967753 22967792 -121314697 + AT_rich Low_complexity Low_complexity 1 39 0 249 108 0 0 chr12 22968385 22968422 -121314067 + (CA)n Simple_repeat Simple_repeat 1 37 0 1573 165 27 54 chr12 22969599 22969896 -121312593 - AluJo SINE Alu -23 289 1 418 306 68 38 chr12 22970010 22970275 -121312214 - L1ME4a LINE L1 -213 5891 5619 257 263 17 0 chr12 22970310 22970428 -121312061 - L1ME4a LINE L1 -2889 3240 3121 286 296 13 9 chr12 22970461 22970578 -121311911 + MLT1G1-int LTR MaLR 1251 1734 0 812 262 52 39 chr12 22970578 22971096 -121311393 + MLT1G1 LTR MaLR 1 501 -54 334 301 55 14 chr12 22971455 22971674 -121310815 - L1MEc LINE L1 -4736 1529 1168 545 257 145 50 chr12 22971824 22972322 -121310167 - L1MEc LINE L1 -5010 1109 565 273 202 269 0 chr12 22972643 22972747 -121309742 - MIR SINE MIR -65 197 66 900 152 111 12 chr12 22973471 22973534 -121308955 - AluJb SINE Alu -12 300 245 294 29 0 0 chr12 22973534 22973569 -121308920 + (CCCTAA)n Simple_repeat Simple_repeat 3 37 0 900 152 111 12 chr12 22973569 22973676 -121308813 - AluJb SINE Alu -67 245 113 2317 135 13 8 chr12 22973699 22974091 -121308398 + MSTA LTR MaLR 1 394 -34 698 46 0 0 chr12 22974091 22974178 -121308311 - AluY SINE Alu -8 303 217 503 307 18 26 chr12 22974375 22974603 -121307886 + Charlie2b DNA MER1_type 88 313 -2549 324 262 37 0 chr12 22974600 22974707 -121307782 + Charlie2b DNA MER1_type 556 666 -2116 * 266 213 229 16 chr12 22974842 22974964 -121307525 + Charlie2a DNA MER1_type 1512 1659 -1203 349 145 14 0 chr12 22975093 22975162 -121307327 + L1PB4 LINE L1 6084 6153 -3 2158 109 7 0 chr12 22976242 22976535 -121305954 + AluSq SINE Alu 1 295 -18 36 0 0 0 chr12 22976942 22976978 -121305511 + AT_rich Low_complexity Low_complexity 1 36 0 1537 147 24 4 chr12 22976991 22977243 -121305246 - AluJb SINE Alu -54 258 2 721 260 67 64 chr12 22977252 22977895 -121304594 - L1M4 LINE L1 -1134 5012 4368 3699 189 79 5 chr12 22978076 22978844 -121303645 + MER21B LTR ERV1 1 825 -38 525 257 76 53 chr12 22978906 22979077 -121303412 + MER21B LTR ERV1 1 175 -688 501 279 71 31 chr12 22979174 22979400 -121303089 + MIR SINE MIR 15 249 -13 444 112 0 34 chr12 22979557 22979646 -121302843 + (TCCC)n Simple_repeat Simple_repeat 3 88 0 373 256 0 17 chr12 22979837 22979954 -121302535 + L1MD1 LINE L1 6128 6242 0 22 70 0 0 chr12 22980235 22980278 -121302211 + AT_rich Low_complexity Low_complexity 1 43 0 257 238 113 0 chr12 22980515 22980595 -121301894 + L1MC/D LINE L1 5510 5598 -2210 219 170 0 0 chr12 22980994 22981041 -121301448 + (TATAA)n Simple_repeat Simple_repeat 4 50 0 2486 74 0 6 chr12 22981701 22982012 -121300477 - AluY SINE Alu -2 309 1 261 0 0 0 chr12 22982022 22982051 -121300438 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 403 310 64 35 chr12 22982677 22982880 -121299609 + MIR SINE MIR 43 251 -11 328 322 94 22 chr12 22985581 22985761 -121296728 - MIR3 SINE MIR -5 203 11 208 271 53 66 chr12 22985724 22985875 -121296614 + L2 LINE L2 2066 2214 -1100 * 2306 267 132 70 chr12 22989463 22989715 -121292774 - L2 LINE L2 -1 3312 3077 1885 143 7 40 chr12 22989715 22990016 -121292473 - AluSx SINE Alu -21 291 1 2306 267 132 70 chr12 22990016 22991147 -121291342 - L2 LINE L2 -236 3077 1836 240 198 111 37 chr12 22991826 22991907 -121290582 - L2 LINE L2 -1 3312 3226 2448 60 7 3 chr12 22991957 22992258 -121290231 - AluY SINE Alu -9 302 1 1872 174 13 7 chr12 22992640 22992950 -121289539 - AluJb SINE Alu 0 312 1 24 32 0 0 chr12 22993222 22993253 -121289236 + AT_rich Low_complexity Low_complexity 1 31 0 1489 133 0 9 chr12 22993367 22993585 -121288904 - AluJb SINE Alu -10 302 87 1976 90 65 7 chr12 22993643 22993921 -121288568 - AluSx SINE Alu -18 294 1 472 284 28 7 chr12 22994334 22994475 -121288014 - L2 LINE L2 -5 3308 3165 249 267 0 0 chr12 22994501 22994546 -121287943 - L2 LINE L2 -257 3056 3012 427 257 223 10 chr12 22997922 22998124 -121284365 + MIR SINE MIR 17 261 -1 29 0 0 0 chr12 22998981 22999010 -121283479 + AT_rich Low_complexity Low_complexity 1 29 0 1587 174 31 31 chr12 22999010 22999298 -121283191 + AluJo SINE Alu 1 288 -24 414 143 0 0 chr12 22999305 22999382 -121283107 + (CA)n Simple_repeat Simple_repeat 2 78 0 270 222 0 63 chr12 22999557 22999620 -121282869 - L2 LINE L2 -7 3306 3248 327 285 76 35 chr12 23000197 23000341 -121282148 + MER5A DNA MER1_type 38 187 -2 295 194 19 93 chr12 23000811 23000919 -121281570 - MER102a DNA MER1_type 0 330 231 2243 91 15 76 chr12 23000922 23001316 -121281173 - THE1C LTR MaLR 0 375 6 399 217 8 33 chr12 23001366 23001486 -121281003 - MER102a DNA MER1_type -148 182 66 384 259 38 8 chr12 23002011 23002142 -121280347 - L1ME LINE L1 -297 5824 5690 450 305 86 10 chr12 23002653 23002850 -121279639 + MIR SINE MIR 47 258 -4 24 103 0 0 chr12 23002987 23003074 -121279415 + AT_rich Low_complexity Low_complexity 1 87 0 1004 219 0 0 chr12 23003102 23003303 -121279186 + L1PB4 LINE L1 5949 6149 -7 464 244 83 57 chr12 23003970 23004163 -121278326 + MIR SINE MIR 63 260 -2 2117 206 30 8 chr12 23005590 23006092 -121276397 + LTR27 LTR ERV1 12 501 0 185 0 40 0 chr12 23006239 23006264 -121276225 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 638 366 81 25 chr12 23006265 23006934 -121275555 - L2 LINE L2 -13 3259 2550 225 182 15 76 chr12 23007307 23007373 -121275116 - L2 LINE L2 -2 3311 3250 285 366 98 5 chr12 23007570 23007764 -121274725 - L2 LINE L2 -213 3059 2848 2084 123 3 3 chr12 23007764 23008056 -121274433 + AluSx SINE Alu 1 292 -20 21 71 0 0 chr12 23009226 23009268 -121273221 + AT_rich Low_complexity Low_complexity 1 42 0 2291 108 10 0 chr12 23009859 23010156 -121272333 - AluSq SINE Alu -10 303 4 198 348 181 23 chr12 23010161 23010460 -121272029 - L2 LINE L2 -675 2639 2294 338 247 0 35 chr12 23010477 23010562 -121271927 + L2 LINE L2 3229 3310 -3 231 367 42 39 chr12 23013673 23013904 -121268585 - MIR SINE MIR -14 248 23 1603 178 0 88 chr12 23014193 23014535 -121267954 + AluJb SINE Alu 1 312 0 556 300 47 6 chr12 23014678 23014848 -121267641 + MIR SINE MIR 31 207 -55 304 305 5 0 chr12 23014901 23014994 -121267495 + MLT1J2 LTR MaLR 64 142 -308 2072 127 13 13 chr12 23018082 23018389 -121264100 + AluSx SINE Alu 1 307 -5 295 383 11 34 chr12 23018394 23018569 -121263920 - MIR SINE MIR -56 206 36 185 282 70 0 chr12 23020383 23020454 -121262035 + L2 LINE L2 1903 1978 -1336 234 269 77 0 chr12 23020774 23020852 -121261637 + MIR SINE MIR 16 99 -109 948 136 107 0 chr12 23021400 23021540 -121260949 - FRAM SINE Alu -24 152 1 283 177 149 139 chr12 23021739 23021935 -121260554 - MIR SINE MIR -60 148 1 191 339 0 16 chr12 23022088 23022150 -121260339 - MIR SINE MIR -155 107 47 274 340 52 13 chr12 23022295 23022448 -121260041 - MIR SINE MIR -33 229 71 313 269 11 0 chr12 23022832 23022925 -121259564 + (TAG)n Simple_repeat Simple_repeat 1 94 0 29 0 0 0 chr12 23024440 23024469 -121258020 + AT_rich Low_complexity Low_complexity 1 29 0 737 234 37 46 chr12 23024771 23024989 -121257500 + L2 LINE L2 3089 3304 -9 2311 144 33 0 chr12 23024989 23025384 -121257105 + L1PA16 LINE L1 5738 6145 -21 200 119 24 48 chr12 23025394 23025436 -121257053 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1096 240 178 53 chr12 23027480 23027764 -121254725 - L2 LINE L2 0 3313 2955 1443 245 70 40 chr12 23027764 23027943 -121254546 - MER34 LTR ERV1 0 542 370 1809 158 21 18 chr12 23027943 23028228 -121254261 + AluJo SINE Alu 1 286 -26 1443 245 70 40 chr12 23028228 23028574 -121253915 - MER34 LTR ERV1 -172 370 1 1096 240 178 53 chr12 23028574 23028722 -121253767 - L2 LINE L2 -358 2955 2827 4402 174 47 5 chr12 23030229 23031023 -121251466 + MER21B LTR ERV1 1 827 -36 3908 111 61 52 chr12 23031562 23032443 -121250046 + MER4A-int LTR ERV1 2793 3681 -2917 * 16228 99 37 18 chr12 23032442 23035150 -121247339 + MER4A-int LTR ERV1 3837 6596 -2 586 120 0 20 chr12 23035158 23035258 -121247231 + MER4A LTR ERV1 1 98 -566 1666 125 12 31 chr12 23035258 23035610 -121246879 + MER4A LTR ERV1 261 664 0 10575 105 109 81 chr12 23035613 23036339 -121246150 + MER4A-int LTR ERV1 1 705 -5893 378 0 0 0 chr12 23036339 23036381 -121246108 + (CA)n Simple_repeat Simple_repeat 1 42 0 10575 105 109 81 chr12 23036381 23037872 -121244617 + MER4A-int LTR ERV1 705 2293 -4305 2294 110 0 0 chr12 23037872 23038173 -121244316 - AluSx SINE Alu -11 301 1 10575 105 109 81 chr12 23038173 23038382 -121244107 + MER4A-int LTR ERV1 2293 2495 -4103 1052 125 155 10 chr12 23038382 23038582 -121243907 - LTR8 LTR ERV1 -434 257 29 * 1654 115 4 19 chr12 23038577 23038837 -121243652 + MER4A LTR ERV1 409 664 0 1827 274 119 25 chr12 23038847 23039943 -121242546 - HAL1 LINE L1 -760 1747 550 274 242 30 85 chr12 23040165 23040330 -121242159 - HAL1 LINE L1 -2310 197 42 768 177 0 0 chr12 23040457 23040581 -121241908 - FLAM_A SINE Alu -8 125 2 440 316 109 38 chr12 23040874 23041434 -121241055 + L2 LINE L2 1552 2151 -1163 4161 147 50 3 chr12 23041577 23042263 -121240226 + MER72 LTR ERV1 5 722 0 354 221 195 20 chr12 23042328 23042477 -121240012 - MIR SINE MIR -10 252 78 362 244 181 19 chr12 23042555 23042715 -121239774 + MIR SINE MIR 67 252 -10 378 326 45 23 chr12 23043609 23043741 -121238748 - L2 LINE L2 0 3272 3138 24 53 0 0 chr12 23045206 23045244 -121237245 + AT_rich Low_complexity Low_complexity 1 38 0 621 319 14 9 chr12 23045536 23045752 -121236737 + MIR SINE MIR 15 231 -31 180 0 0 0 chr12 23048262 23048282 -121234207 + (A)n Simple_repeat Simple_repeat 1 20 0 952 117 7 0 chr12 23048341 23048486 -121234003 + L1PA10 LINE L1 6018 6163 -5 413 311 135 23 chr12 23048662 23049062 -121233427 + L1ME4a LINE L1 4633 5070 -1076 313 319 36 40 chr12 23049071 23049322 -121233167 + L1ME4a LINE L1 5111 5360 -786 226 362 72 5 chr12 23049353 23049560 -121232929 + L1ME4a LINE L1 5444 5664 -2144 1695 205 79 90 chr12 23049807 23050339 -121232150 - MLT1F1 LTR MaLR -7 560 10 367 261 108 0 chr12 23050414 23050525 -121231964 - MER94 DNA DNA 0 134 12 249 229 0 0 chr12 23050526 23050587 -121231902 + L1ME4a LINE L1 5957 6017 -104 22 0 0 0 chr12 23050645 23050667 -121231822 + AT_rich Low_complexity Low_complexity 1 22 0 341 297 0 7 chr12 23051363 23051542 -121230947 + MIR SINE MIR 38 256 -6 * 413 276 103 43 chr12 23051529 23051714 -121230775 + MIR SINE MIR 54 249 -13 264 259 19 0 chr12 23051801 23051855 -121230634 + L2 LINE L2 3210 3264 -8 333 194 0 21 chr12 23052591 23052684 -121229805 + L1MA4 LINE L1 6210 6300 0 1683 106 96 18 chr12 23053055 23053337 -121229152 + AluJo SINE Alu 1 304 -8 1226 44 11 22 chr12 23053346 23053526 -121228963 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 202 182 18 36 chr12 23053672 23053727 -121228762 + GA-rich Low_complexity Low_complexity 2 55 0 397 282 10 10 chr12 23054797 23054900 -121227589 + L2 LINE L2 3170 3272 0 4577 88 13 0 chr12 23055889 23056522 -121225967 + L1PA11 LINE L1 5534 6174 0 295 245 46 61 chr12 23056568 23056764 -121225725 + L1ME4a LINE L1 5705 5897 -224 336 252 34 27 chr12 23056855 23057002 -121225487 + L1ME LINE L1 5678 5825 -296 363 306 38 33 chr12 23057348 23057531 -121224958 + L1ME4a LINE L1 5770 5953 -168 6678 74 7 0 chr12 23157877 23159652 -121122837 + L1PA13 LINE L1 4387 6163 0 313 339 61 28 chr12 23159652 23159832 -121122657 + L1M4 LINE L1 2966 3151 -2995 903 231 17 27 chr12 23159886 23160184 -121122305 + L1MEc LINE L1 1999 2293 -4103 2944 251 70 30 chr12 23160281 23160715 -121121774 + L1MEc LINE L1 2243 2658 -3557 1955 149 0 3 chr12 23160715 23161011 -121121478 + AluSx SINE Alu 4 298 -14 2944 251 70 30 chr12 23161011 23161859 -121120630 + L1MEc LINE L1 2658 3751 -2464 2669 106 17 5 chr12 23161841 23162257 -121120232 + L1P5 LINE L1 5369 5789 -367 * 221 115 0 19 chr12 23162263 23162315 -121120174 + (TA)n Simple_repeat Simple_repeat 2 52 0 319 237 0 52 chr12 23162315 23162412 -121120077 + L1MC4 LINE L1 6612 6703 -1339 860 103 0 32 chr12 23162413 23162722 -121119767 + (TA)n Simple_repeat Simple_repeat 2 300 0 327 303 0 0 chr12 23162725 23162814 -121119675 + L1MC4 LINE L1 6614 6702 -1340 317 300 0 0 chr12 23162815 23162905 -121119584 + L1MC4 LINE L1 6614 6703 -1339 225 35 0 0 chr12 23162927 23162956 -121119533 - L1MC/D LINE L1 -421 5821 5793 180 0 0 0 chr12 23162956 23162976 -121119513 + (TG)n Simple_repeat Simple_repeat 2 21 0 225 98 0 0 chr12 23163000 23163041 -121119448 - LTR66 LTR ERVL -172 438 398 * 266 70 0 0 chr12 23163010 23163053 -121119436 + LTR66 LTR ERVL 399 441 -169 2317 127 6 6 chr12 23163083 23163096 -121119393 + L1PB4 LINE L1 5782 5794 -362 204 40 0 0 chr12 23163096 23163121 -121119368 + (CA)n Simple_repeat Simple_repeat 2 26 0 2317 127 6 6 chr12 23163121 23163469 -121119020 + L1PB4 LINE L1 5793 6143 -13 1253 256 24 34 chr12 23163478 23163977 -121118512 + L1ME1 LINE L1 3131 3624 -2522 * 3930 229 74 40 chr12 23163975 23166244 -121116245 + L1ME1 LINE L1 3825 6159 -7 3006 245 70 15 chr12 23166355 23167341 -121115148 + L1PB1 LINE L1 6 1045 -5818 5219 198 17 5 chr12 23167346 23172438 -121110051 + L1PB1 LINE L1 1094 6515 -352 316 71 36 0 chr12 23172438 23172494 -121109995 + (TA)n Simple_repeat Simple_repeat 2 59 0 5219 198 17 5 chr12 23172494 23172851 -121109638 + L1PB1 LINE L1 6515 6866 -1 24 53 0 0 chr12 23172851 23172889 -121109600 + AT_rich Low_complexity Low_complexity 1 38 0 1548 242 163 16 chr12 23173696 23173976 -121108513 - MLT1E2 LTR MaLR 0 626 388 2116 95 29 10 chr12 23173976 23174282 -121108207 - AluSx SINE Alu 0 312 1 1548 242 163 16 chr12 23174282 23174547 -121107942 - MLT1E2 LTR MaLR -238 388 1 22 56 0 0 chr12 23174666 23174702 -121107787 + AT_rich Low_complexity Low_complexity 1 36 0 4506 134 34 5 chr12 23174707 23175477 -121107012 + L1MA8 LINE L1 5497 6288 -3 353 146 53 6 chr12 23175487 23175658 -121106831 + (TA)n Simple_repeat Simple_repeat 2 180 0 204 147 40 0 chr12 23175677 23175752 -121106737 + (TA)n Simple_repeat Simple_repeat 1 78 0 604 212 119 7 chr12 23176642 23176793 -121105696 + L1ME1 LINE L1 5987 6154 -12 215 219 0 0 chr12 23177626 23177667 -121104822 + (TGGA)n Simple_repeat Simple_repeat 1 41 0 669 263 120 14 chr12 23177777 23177994 -121104495 + MIR SINE MIR 23 262 0 449 179 151 9 chr12 23178039 23178145 -121104344 + L2 LINE L2 3189 3309 -4 245 250 0 0 chr12 23178211 23178263 -121104226 + L2 LINE L2 3262 3313 0 28 48 0 0 chr12 23178349 23178391 -121104098 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr12 23179219 23179247 -121103242 + AT_rich Low_complexity Low_complexity 1 28 0 636 300 130 32 chr12 23179754 23180377 -121102112 + L1ME2 LINE L1 5279 5960 -161 907 305 34 29 chr12 23180399 23180809 -121101680 + L1MC4a LINE L1 5566 5977 -1831 21 95 0 0 chr12 23180978 23181041 -121101448 + AT_rich Low_complexity Low_complexity 1 63 0 224 325 140 9 chr12 23181311 23181425 -121101064 + MIR SINE MIR 18 146 -62 386 168 288 0 chr12 23181657 23181782 -121100707 - MIR SINE MIR 0 262 102 722 194 0 0 chr12 23182552 23182676 -121099813 + FLAM_A SINE Alu 1 124 -9 24 32 0 0 chr12 23183133 23183164 -121099325 + AT_rich Low_complexity Low_complexity 1 31 0 327 204 18 133 chr12 23184004 23184117 -121098372 - MIR SINE MIR -110 152 53 563 318 74 52 chr12 23184239 23184660 -121097829 + L2 LINE L2 2871 3300 -13 24 0 0 0 chr12 23185062 23185086 -121097403 + AT_rich Low_complexity Low_complexity 1 24 0 2001 136 0 0 chr12 23185471 23185751 -121096738 - AluSx SINE Alu -32 280 1 238 266 31 16 chr12 23185806 23185870 -121096619 - L2 LINE L2 0 3313 3249 25 0 0 0 chr12 23186614 23186639 -121095850 + AT_rich Low_complexity Low_complexity 1 25 0 683 264 98 13 chr12 23187473 23187702 -121094787 - MIR SINE MIR 0 262 20 2097 112 3 7 chr12 23190350 23190645 -121091844 - AluSq SINE Alu -19 294 1 249 289 47 31 chr12 23191356 23191484 -121091005 + L1ME4a LINE L1 5977 6106 -15 926 226 197 52 chr12 23192489 23192571 -121089918 + MSTD LTR MaLR 2 71 -325 1673 170 13 3 chr12 23192571 23192871 -121089618 + AluJb SINE Alu 1 303 -9 2173 100 0 17 chr12 23192871 23193172 -121089317 + AluSx SINE Alu 1 296 -16 926 226 197 52 chr12 23193172 23193433 -121089056 + MSTD LTR MaLR 70 396 0 22 0 0 0 chr12 23194508 23194530 -121087959 + AT_rich Low_complexity Low_complexity 1 22 0 1397 153 131 8 chr12 23196936 23197204 -121085285 - AluJo SINE Alu 0 302 2 363 272 122 14 chr12 23197302 23197449 -121085040 - MIR3 SINE MIR 0 208 46 1750 177 3 0 chr12 23197990 23198284 -121084205 - AluJo SINE Alu -17 295 1 21 36 0 0 chr12 23198799 23198827 -121083662 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 23199601 23199624 -121082865 + AT_rich Low_complexity Low_complexity 1 23 0 322 309 0 32 chr12 23199721 23199844 -121082645 + MIR SINE MIR 129 247 -15 24 0 0 0 chr12 23201285 23201309 -121081180 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr12 23201858 23201887 -121080602 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr12 23202984 23203006 -121079483 + AT_rich Low_complexity Low_complexity 1 22 0 728 237 34 17 chr12 23203413 23203590 -121078899 - MER5A DNA MER1_type -9 180 1 27 29 0 0 chr12 23204383 23204417 -121078072 + AT_rich Low_complexity Low_complexity 1 34 0 204 182 91 0 chr12 23206296 23206340 -121076149 + L2 LINE L2 3265 3312 -1 225 217 14 43 chr12 23206371 23206440 -121076049 - L2 LINE L2 -94 3219 3153 1073 199 142 0 chr12 23206821 23207102 -121075387 - MER33 DNA MER1_type 0 324 4 551 27 27 0 chr12 23207283 23207356 -121075133 - L1PA4 LINE L1 -3 6152 6078 344 284 229 25 chr12 23207651 23207767 -121074722 - L2 LINE L2 -1 3312 3221 342 61 0 0 chr12 23207767 23207816 -121074673 + (CA)n Simple_repeat Simple_repeat 2 50 0 344 284 229 25 chr12 23207816 23207974 -121074515 - L2 LINE L2 -92 3221 2982 2237 123 0 0 chr12 23208330 23208640 -121073849 + AluSx SINE Alu 1 310 -2 2148 116 0 0 chr12 23208845 23209138 -121073351 - AluSx SINE Alu -17 295 3 32 57 0 0 chr12 23209147 23209200 -121073289 + AT_rich Low_complexity Low_complexity 1 53 0 24 53 0 0 chr12 23209446 23209484 -121073005 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr12 23209698 23209721 -121072768 + AT_rich Low_complexity Low_complexity 1 23 0 278 346 46 8 chr12 23209963 23210093 -121072396 + MIR SINE MIR 17 151 -111 1929 149 0 7 chr12 23210570 23210871 -121071618 - AluJb SINE Alu -13 299 1 1258 167 121 39 chr12 23211416 23211698 -121070791 - AluJb SINE Alu -7 305 1 935 181 75 25 chr12 23211831 23212030 -121070459 + MER20 DNA MER1_type 11 219 0 1649 101 47 0 chr12 23212696 23212953 -121069536 + L1MA2 LINE L1 6035 6303 -1 560 249 120 31 chr12 23213162 23213439 -121069050 + L1MEc LINE L1 1799 2064 -4476 1005 303 157 12 chr12 23213445 23214013 -121068476 - L2 LINE L2 -767 2547 1898 25 51 0 0 chr12 23214656 23214695 -121067794 + AT_rich Low_complexity Low_complexity 1 39 0 991 75 48 0 chr12 23215056 23215202 -121067287 + L1MA2 LINE L1 5980 6132 -172 325 111 0 0 chr12 23215202 23215254 -121067235 + L1MA3 LINE L1 6252 6305 0 26 64 0 0 chr12 23215265 23215312 -121067177 + AT_rich Low_complexity Low_complexity 1 47 0 227 294 82 0 chr12 23215601 23215686 -121066803 + L1ME4a LINE L1 5992 6083 -38 7359 27 16 0 chr12 23216642 23217971 -121064518 + L1PA4 LINE L1 4812 6154 -1 2142 126 0 13 chr12 23218633 23218942 -121063547 - AluSx SINE Alu -7 305 1 198 118 0 0 chr12 23219073 23219107 -121063382 + (TA)n Simple_repeat Simple_repeat 1 34 0 1243 225 51 30 chr12 23219107 23219440 -121063049 - MER2 DNA MER2_type 0 345 6 24 0 0 0 chr12 23220533 23220557 -121061932 + AT_rich Low_complexity Low_complexity 1 24 0 2090 138 0 0 chr12 23221358 23221656 -121060833 + AluSg SINE Alu 1 298 -12 540 265 41 27 chr12 23222755 23222902 -121059587 - MIR SINE MIR -111 151 3 67 73 0 0 chr12 23226365 23226502 -121055987 + AT_rich Low_complexity Low_complexity 1 137 0 1279 130 41 12 chr12 23226957 23227203 -121055286 + L1MA4A LINE L1 6045 6297 -6 408 88 0 0 chr12 23227652 23227709 -121054780 + (CA)n Simple_repeat Simple_repeat 2 58 0 272 344 33 11 chr12 23228041 23228131 -121054358 + L2 LINE L2 3176 3267 -5 731 290 92 0 chr12 23229089 23229306 -121053183 + MIR SINE MIR 15 251 -11 283 357 56 0 chr12 23229308 23229434 -121053055 + L2 LINE L2 2564 2696 -618 2054 122 14 0 chr12 23229674 23229962 -121052527 + AluSx SINE Alu 3 294 -18 322 323 132 36 chr12 23230217 23230437 -121052052 + L2 LINE L2 2994 3234 -38 23 92 0 0 chr12 23231764 23231829 -121050660 + AT_rich Low_complexity Low_complexity 1 65 0 1869 162 0 3 chr12 23233279 23233576 -121048913 - AluSx SINE Alu -14 298 3 2304 86 0 19 chr12 23234061 23234374 -121048115 - AluSx SINE Alu -5 307 1 26 30 0 0 chr12 23234903 23234936 -121047553 + AT_rich Low_complexity Low_complexity 1 33 0 1500 82 5 0 chr12 23235013 23235207 -121047282 - AluSq SINE Alu -2 311 117 438 139 16 131 chr12 23235950 23236072 -121046417 - FLAM_A SINE Alu -34 108 1 2726 10 0 7 chr12 23238638 23238944 -121043545 - AluYb8 SINE Alu -14 304 1 292 214 222 24 chr12 23239432 23239558 -121042931 - MIR SINE MIR -4 258 108 2236 116 0 0 chr12 23239690 23239992 -121042497 + AluSq SINE Alu 2 303 -10 334 214 0 0 chr12 23240482 23240552 -121041937 + MER103 DNA DNA 1 70 -96 665 190 0 0 chr12 23240615 23240731 -121041758 + FLAM_C SINE Alu 1 116 -17 27 62 0 0 chr12 23242675 23242723 -121039766 + AT_rich Low_complexity Low_complexity 1 48 0 31 0 0 0 chr12 23244516 23244547 -121037942 + AT_rich Low_complexity Low_complexity 1 31 0 23 86 0 0 chr12 23246112 23246170 -121036319 + AT_rich Low_complexity Low_complexity 1 58 0 191 36 36 0 chr12 23246407 23246435 -121036054 + (TAA)n Simple_repeat Simple_repeat 2 30 0 35 88 0 0 chr12 23246997 23247088 -121035401 + AT_rich Low_complexity Low_complexity 1 91 0 22 0 0 0 chr12 23248576 23248598 -121033891 + AT_rich Low_complexity Low_complexity 1 22 0 745 231 90 33 chr12 23251759 23251971 -121030518 + MER58A DNA MER1_type 1 224 0 274 155 190 0 chr12 23252333 23252391 -121030098 + MER58B DNA MER1_type 269 337 -4 2002 148 0 3 chr12 23252697 23253002 -121029487 + AluJb SINE Alu 1 304 -8 28 61 0 0 chr12 23253010 23253059 -121029430 + AT_rich Low_complexity Low_complexity 1 49 0 230 286 0 14 chr12 23253488 23253558 -121028931 - MIR3 SINE MIR -7 201 133 231 246 24 32 chr12 23253592 23253718 -121028771 + (TA)n Simple_repeat Simple_repeat 2 126 0 21 36 0 0 chr12 23253722 23253750 -121028739 + AT_rich Low_complexity Low_complexity 1 28 0 207 316 26 61 chr12 23253888 23254002 -121028487 - MIR3 SINE MIR -93 115 6 227 191 0 21 chr12 23255566 23255613 -121026876 + Tigger5 DNA MER2_type 17 62 -2261 * 1333 146 65 4 chr12 23255611 23255858 -121026631 + Tigger5 DNA MER2_type 2062 2323 0 591 284 107 5 chr12 23256058 23256273 -121026216 - MIR SINE MIR -9 253 17 663 151 9 0 chr12 23256356 23256462 -121026027 + FLAM_C SINE Alu 1 107 -36 745 212 7 0 chr12 23256664 23256801 -121025688 + AluSx SINE Alu 27 164 -148 22 35 0 0 chr12 23257028 23257057 -121025432 + AT_rich Low_complexity Low_complexity 1 29 0 182 37 37 0 chr12 23257071 23257098 -121025391 + (TA)n Simple_repeat Simple_repeat 2 29 0 2223 84 49 0 chr12 23257098 23257384 -121025105 - AluSp SINE Alu -13 300 1 188 318 71 24 chr12 23258180 23258265 -121024224 - L2 LINE L2 -21 3292 3204 683 349 42 47 chr12 23258273 23258680 -121023809 - L3 LINE CR1 -422 1155 751 354 240 66 79 chr12 23258689 23258993 -121023496 + L1MC5 LINE L1 7640 7939 -22 262 154 0 0 chr12 23259453 23259492 -121022997 + MLT1J LTR MaLR 100 138 -373 233 283 40 30 chr12 23259731 23259830 -121022659 + MLT1J LTR MaLR 358 457 -54 446 235 8 8 chr12 23259843 23260085 -121022404 + (TA)n Simple_repeat Simple_repeat 1 242 0 2064 138 3 0 chr12 23260227 23260523 -121021966 - AluSx SINE Alu -15 297 1 262 180 0 0 chr12 23261048 23261109 -121021380 + L1MC4a LINE L1 2213 2273 -4111 753 206 0 0 chr12 23261115 23261270 -121021219 + L1MC4a LINE L1 4942 5096 -1286 2164 100 28 0 chr12 23261822 23262111 -121020378 + AluSp SINE Alu 1 297 -16 273 237 175 18 chr12 23262797 23262911 -121019578 - L2 LINE L2 -15 3298 3167 434 224 246 17 chr12 23262987 23263166 -121019323 + MIR SINE MIR 31 250 -12 1375 185 65 65 chr12 23263580 23263670 -121018819 + L1MC4a LINE L1 5117 5206 -1176 2116 112 0 14 chr12 23263670 23263964 -121018525 + AluSx SINE Alu 1 290 -22 1375 185 65 65 chr12 23263964 23264316 -121018173 + L1MC4a LINE L1 5205 5559 -823 * 1957 182 11 0 chr12 23264312 23264686 -121017803 + L1MB4 LINE L1 5768 6145 -35 23 0 0 0 chr12 23264708 23264731 -121017758 + AT_rich Low_complexity Low_complexity 1 23 0 1135 239 183 16 chr12 23265383 23265876 -121016613 + L1MC4a LINE L1 5529 6103 -1941 21 71 0 0 chr12 23266114 23266156 -121016333 + AT_rich Low_complexity Low_complexity 1 42 0 317 312 81 23 chr12 23266287 23266508 -121015981 + L1ME4a LINE L1 5801 6034 -87 564 179 14 71 chr12 23267035 23267175 -121015314 + FLAM_A SINE Alu 1 132 -1 379 265 173 12 chr12 23267388 23267550 -121014939 + MIR SINE MIR 65 252 -10 866 277 124 25 chr12 23268711 23269220 -121013269 + L2 LINE L2 1605 2163 -1151 886 259 141 15 chr12 23269325 23269478 -121013011 + MER20B DNA MER1_type 82 214 -569 2241 113 10 3 chr12 23269478 23269788 -121012701 + AluSq SINE Alu 1 312 -1 886 259 141 15 chr12 23269788 23270024 -121012465 + MER20B DNA MER1_type 214 520 -263 458 232 66 53 chr12 23270115 23270266 -121012223 + L2 LINE L2 3138 3290 -23 2210 104 0 0 chr12 23270343 23270632 -121011857 + AluSx SINE Alu 1 289 -23 298 236 101 14 chr12 23270659 23270807 -121011682 + MER20B DNA MER1_type 623 783 0 754 286 189 50 chr12 23270819 23271732 -121010757 + L2 LINE L2 2244 3312 -1 449 106 0 96 chr12 23272022 23272116 -121010373 + AluJ/FLAM SINE Alu 1 85 -227 299 270 158 68 chr12 23272191 23272413 -121010076 + L2 LINE L2 2828 3069 -203 574 258 172 23 chr12 23272459 23272680 -121009809 + MIR SINE MIR 7 260 -2 183 302 156 10 chr12 23272703 23272799 -121009690 + L2 LINE L2 3158 3267 -5 198 71 0 0 chr12 23273360 23273388 -121009101 + (TG)n Simple_repeat Simple_repeat 2 29 0 243 61 0 0 chr12 23273475 23273508 -121008981 + (TG)n Simple_repeat Simple_repeat 2 34 0 25 0 0 0 chr12 23274032 23274057 -121008432 + GC_rich Low_complexity Low_complexity 1 25 0 1964 83 4 0 chr12 23274711 23274963 -121007526 + AluSq SINE Alu 1 253 -60 1631 145 10 72 chr12 23275158 23275462 -121007027 + AluJo SINE Alu 6 290 -22 1565 176 14 4 chr12 23276187 23276485 -121006004 - AluJo SINE Alu 0 302 2 497 340 73 17 chr12 23276976 23277208 -121005281 - MIR SINE MIR 0 262 18 317 120 0 0 chr12 23277317 23277367 -121005122 + U5 snRNA snRNA 1 50 -66 1173 314 62 35 chr12 23277686 23277876 -121004613 + L2 LINE L2 1752 1935 -1379 747 191 0 0 chr12 23277876 23278002 -121004487 - FLAM_A SINE Alu -7 126 1 1173 314 62 35 chr12 23278002 23278404 -121004085 + L2 LINE L2 1935 2360 -954 186 143 0 0 chr12 23278452 23278487 -121004002 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1849 167 3 0 chr12 23278641 23278928 -121003561 - AluJb SINE Alu -14 298 11 2122 104 14 3 chr12 23279131 23279418 -121003071 - AluSq SINE Alu -23 290 1 2185 95 0 7 chr12 23279658 23279969 -121002520 - AluSx SINE Alu 0 309 1 1927 161 7 7 chr12 23280312 23280611 -121001878 + AluSx SINE Alu 1 299 -13 421 375 46 0 chr12 23281612 23281764 -121000725 + L2 LINE L2 2732 2890 -424 1237 287 121 51 chr12 23281898 23282718 -120999771 + L1MC4a LINE L1 5264 6025 -1783 1963 114 179 16 chr12 23282718 23283086 -120999403 + MSTA LTR MaLR 1 428 0 1237 287 121 51 chr12 23283086 23283513 -120998976 + L1MC4a LINE L1 6025 6421 -1387 1721 166 3 42 chr12 23283513 23283821 -120998668 - AluJb SINE Alu 0 312 17 180 0 0 0 chr12 23283824 23283844 -120998645 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1237 287 121 51 chr12 23283844 23284205 -120998284 + L1MC4a LINE L1 6422 6990 -818 4508 100 84 75 chr12 23284224 23285237 -120997252 - MER11A LTR ERVK 0 1266 245 326 67 0 0 chr12 23285240 23285285 -120997204 - MER11A LTR ERVK -1221 45 1 2356 85 0 3 chr12 23285299 23285594 -120996895 + AluY SINE Alu 1 294 -17 1718 232 40 51 chr12 23285605 23286313 -120996176 + L1MC5 LINE L1 6968 7667 -294 935 205 19 19 chr12 23286365 23286570 -120995919 + MLT1E2 LTR MaLR 311 515 -111 1929 163 51 9 chr12 23286690 23287040 -120995449 + MLT1A1 LTR MaLR 1 365 0 2298 101 13 10 chr12 23287258 23287566 -120994923 - AluSx SINE Alu -3 309 1 1329 108 21 16 chr12 23287719 23287913 -120994576 - AluSx SINE Alu -117 195 1 1294 107 23 0 chr12 23288092 23288269 -120994220 - AluSx SINE Alu -131 181 1 299 337 68 92 chr12 23288542 23288791 -120993698 - L2 LINE L2 0 3272 3030 2027 202 114 7 chr12 23288791 23289247 -120993242 - MLT1D LTR MaLR 0 505 1 2137 172 22 15 chr12 23289354 23289756 -120992733 + MSTB LTR MaLR 1 405 -21 260 262 99 43 chr12 23289972 23290113 -120992376 - L2 LINE L2 -526 2788 2640 687 206 17 17 chr12 23290116 23290296 -120992193 - MER96B DNA MER1_type? -1 416 237 216 379 9 0 chr12 23290296 23290412 -120992077 - L2 LINE L2 -673 2641 2525 319 283 57 0 chr12 23290491 23290597 -120991892 - L2 LINE L2 -923 2391 2280 194 384 68 17 chr12 23290815 23290992 -120991497 + L2 LINE L2 451 636 -2678 2181 90 20 23 chr12 23291144 23291444 -120991045 + AluSq SINE Alu 1 299 -14 322 293 203 8 chr12 23291639 23291762 -120990727 + MER91A DNA MER1_type 23 169 -27 1617 189 46 6 chr12 23291769 23292097 -120990392 + MER58B DNA MER1_type 1 341 0 396 360 69 22 chr12 23292110 23292516 -120989973 + L2 LINE L2 1134 1558 -1756 2292 221 25 50 chr12 23292518 23293084 -120989405 + MLT2B3 LTR ERVL 3 554 0 1907 199 53 11 chr12 23293085 23293706 -120988783 + ERVL-B3 LTR ERVL 2 733 -5031 188 271 93 28 chr12 23293716 23293823 -120988666 + L2 LINE L2 1555 1668 -1646 1636 173 0 0 chr12 23293840 23294094 -120988395 - AluJo SINE Alu -58 254 1 560 244 31 19 chr12 23294121 23294281 -120988208 + L2 LINE L2 1956 2117 -1197 968 145 18 130 chr12 23294281 23294612 -120987877 - Charlie1a DNA MER1_type 0 1455 1162 889 250 18 18 chr12 23294622 23294842 -120987647 + MER58A DNA MER1_type 4 223 -1 4508 192 38 58 chr12 23294844 23295435 -120987054 - Charlie1a DNA MER1_type -1595 1166 610 2567 55 0 3 chr12 23295435 23295745 -120986744 - AluY SINE Alu -2 309 1 4508 192 38 58 chr12 23295745 23296343 -120986146 - Charlie1a DNA MER1_type -2151 610 1 1566 242 154 34 chr12 23296343 23296954 -120985535 + L2 LINE L2 2110 2793 -521 465 246 50 57 chr12 23296954 23297199 -120985290 - MLT1H LTR MaLR 0 589 348 1521 238 136 65 chr12 23297309 23298107 -120984382 - LTR28 LTR ERV1 0 1020 107 342 197 145 7 chr12 23298132 23298265 -120984224 - LTR28 LTR ERV1 -476 160 1 1157 223 29 141 chr12 23298300 23298532 -120983957 + MER97a DNA MER1_type? 1 135 -759 2054 125 0 16 chr12 23298532 23298837 -120983652 - AluSx SINE Alu -2 310 11 1157 223 29 141 chr12 23298837 23299165 -120983324 + MER97a DNA MER1_type? 135 498 -396 547 141 0 0 chr12 23299174 23299252 -120983237 + AluJ/FLAM SINE Alu 1 78 -234 317 259 40 23 chr12 23299305 23299479 -120983010 + MER97c DNA MER1_type? 883 1059 -31 821 127 7 7 chr12 23299480 23299622 -120982867 + L1MB3 LINE L1 6042 6183 0 326 220 17 0 chr12 23299626 23299685 -120982804 + MER5B DNA MER1_type 61 120 -58 316 307 62 62 chr12 23299724 23299949 -120982540 + L1MEd LINE L1 967 1191 -4928 2023 152 0 0 chr12 23300236 23300526 -120981963 + AluJb SINE Alu 5 294 -18 31 44 0 0 chr12 23300576 23300621 -120981868 + AT_rich Low_complexity Low_complexity 1 45 0 2206 115 3 0 chr12 23301175 23301471 -120981018 - AluSp SINE Alu -16 297 1 2598 144 2 79 chr12 23301612 23302118 -120980371 - MLT1C LTR MaLR 0 467 1 1927 158 14 0 chr12 23302714 23303001 -120979488 + AluJb SINE Alu 1 322 0 186 65 32 0 chr12 23303001 23303032 -120979457 + (CAA)n Simple_repeat Simple_repeat 2 180 0 2310 98 0 0 chr12 23303281 23303576 -120978913 - AluY SINE Alu -16 295 1 640 210 0 8 chr12 23303599 23303718 -120978771 + FRAM SINE Alu 1 113 -63 25 0 0 0 chr12 23303729 23303754 -120978735 + AT_rich Low_complexity Low_complexity 1 25 0 2073 141 7 0 chr12 23303896 23304200 -120978289 - AluSx SINE Alu -6 306 1 1136 156 32 18 chr12 23304868 23305086 -120977403 + AluJo SINE Alu 87 307 -5 2021 131 3 0 chr12 23305153 23305459 -120977030 + AluSx SINE Alu 1 307 0 1201 130 0 0 chr12 23305640 23305802 -120976687 - AluSg/x SINE Alu -17 295 134 1822 225 28 24 chr12 23306120 23306245 -120976244 + L1ME1 LINE L1 5331 5454 -712 1517 220 56 11 chr12 23306245 23306618 -120975871 - MLT1B LTR MaLR 0 390 1 1822 225 28 24 chr12 23306618 23306938 -120975551 + L1ME1 LINE L1 5454 5781 -385 180 0 0 0 chr12 23306938 23306958 -120975531 + (TA)n Simple_repeat Simple_repeat 2 21 0 1822 225 28 24 chr12 23306958 23307004 -120975485 + L1ME1 LINE L1 5781 5825 -341 * 2056 211 79 49 chr12 23307000 23307446 -120975043 - L1ME LINE L1 -392 5774 5343 1011 192 6 0 chr12 23307446 23307618 -120974871 - FAM SINE Alu -2 173 1 2056 211 79 49 chr12 23307618 23307967 -120974522 - L1ME LINE L1 -823 5343 4935 2708 133 21 16 chr12 23307967 23308395 -120974094 - MSTB1 LTR MaLR 0 432 3 2056 211 79 49 chr12 23308395 23308543 -120973946 - L1ME LINE L1 -1231 4935 4793 26 30 0 0 chr12 23308546 23308579 -120973910 + AT_rich Low_complexity Low_complexity 1 33 0 316 216 11 34 chr12 23308593 23308681 -120973808 + L1MC4 LINE L1 6616 6701 -1341 211 176 40 27 chr12 23308682 23308756 -120973733 + (TA)n Simple_repeat Simple_repeat 1 75 0 292 167 106 0 chr12 23308804 23308870 -120973619 - L1ME LINE L1 -1364 4782 4710 806 168 61 5 chr12 23308870 23309066 -120973423 + MER114 LTR ERV 19 225 -423 186 43 0 0 chr12 23309066 23309089 -120973400 + (TG)n Simple_repeat Simple_repeat 2 24 0 809 129 0 9 chr12 23309089 23309205 -120973284 - FLAM_C SINE Alu -26 117 3 318 215 90 35 chr12 23309205 23309349 -120973140 + MER114 LTR ERV 212 363 -285 453 205 34 8 chr12 23309410 23309527 -120972962 + MER114 LTR ERV 499 618 -30 1762 138 69 0 chr12 23309742 23310017 -120972472 - AluSx SINE Alu -18 294 1 887 114 0 0 chr12 23310040 23310163 -120972326 - AluSg/x SINE Alu -16 294 172 267 157 0 0 chr12 23310193 23310244 -120972245 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 759 181 0 0 chr12 23310284 23310400 -120972089 - FLAM_C SINE Alu -15 118 3 417 286 0 0 chr12 23310616 23310742 -120971747 - L1ME1 LINE L1 -5 6161 6036 995 198 25 25 chr12 23310746 23310984 -120971505 + L1ME2 LINE L1 5679 5916 -248 1171 163 6 0 chr12 23311150 23311322 -120971167 + AluSx SINE Alu 1 173 -139 1779 129 14 30 chr12 23311380 23311675 -120970814 + AluSx SINE Alu 1 290 -22 2160 154 46 29 chr12 23311690 23312105 -120970384 - Tigger2a DNA MER2_type -2 432 11 2018 126 14 7 chr12 23312475 23312768 -120969721 + AluSx SINE Alu 1 295 -17 465 19 0 0 chr12 23313140 23313194 -120969295 + (CA)n Simple_repeat Simple_repeat 2 55 0 2342 161 47 79 chr12 23313227 23313799 -120968690 + MER41C LTR ERV1 1 554 0 2268 107 0 0 chr12 23314408 23314706 -120967783 - AluSc SINE Alu -11 298 1 310 258 0 0 chr12 23314995 23315057 -120967432 + L2 LINE L2 3248 3309 -4 238 303 11 22 chr12 23315256 23315345 -120967144 - MLT1-int LTR MaLR -1279 92 5 433 209 76 0 chr12 23315463 23315568 -120966921 + Charlie4 DNA MER1_type 1841 1953 -8 2267 54 50 0 chr12 23315576 23315855 -120966634 - AluSp SINE Alu -20 293 1 1387 143 0 0 chr12 23316067 23316270 -120966219 + AluJo SINE Alu 87 289 -23 1419 160 0 0 chr12 23316271 23316483 -120966006 - AluJb SINE Alu -99 213 2 2198 105 3 16 chr12 23316831 23317145 -120965344 + AluSq SINE Alu 1 310 -3 521 208 92 25 chr12 23317330 23317450 -120965039 - FLAM_C SINE Alu -15 128 1 1093 192 0 0 chr12 23317535 23317717 -120964772 - AluJo SINE Alu -44 268 87 2011 159 0 0 chr12 23318126 23318434 -120964055 - AluSx SINE Alu -1 311 4 2031 106 53 0 chr12 23319192 23319474 -120963015 + AluSc SINE Alu 1 297 -12 821 160 8 0 chr12 23319763 23319894 -120962595 - FLAM_C SINE Alu -11 132 1 1941 146 13 7 chr12 23320412 23320721 -120961768 + AluJo SINE Alu 1 311 -1 328 247 46 93 chr12 23321367 23321561 -120960928 - L1MC5 LINE L1 -37 7924 7740 569 163 0 0 chr12 23322708 23322794 -120959695 - FRAM SINE Alu -52 124 39 1980 107 3 27 chr12 23322820 23323119 -120959370 - AluSx SINE Alu -20 292 1 504 293 60 0 chr12 23323119 23323334 -120959155 - L1ME4a LINE L1 -292 5829 5602 257 261 0 14 chr12 23323611 23323680 -120958809 + CT-rich Low_complexity Low_complexity 4 71 0 528 299 83 18 chr12 23323810 23324027 -120958462 - L3 LINE CR1 -225 1352 1122 2038 140 0 34 chr12 23324254 23324576 -120957913 + AluSq SINE Alu 1 311 -2 803 11 0 0 chr12 23324600 23324694 -120957795 - L1PA2 LINE L1 -3 6152 6059 24 53 0 0 chr12 23324739 23324777 -120957712 + AT_rich Low_complexity Low_complexity 1 38 0 2060 136 0 10 chr12 23325480 23325782 -120956707 + AluSx SINE Alu 1 299 -13 2188 106 0 20 chr12 23327208 23327511 -120954978 - AluSx SINE Alu -15 297 1 1688 160 80 12 chr12 23328450 23328775 -120953714 + MER7A DNA MER2_type 1 345 -1 264 300 106 62 chr12 23328784 23328944 -120953545 - L2 LINE L2 0 3313 3147 26 30 0 0 chr12 23329115 23329148 -120953341 + AT_rich Low_complexity Low_complexity 1 33 0 2321 92 3 16 chr12 23329564 23329879 -120952610 - AluSq SINE Alu 0 313 3 189 125 200 0 chr12 23330217 23330257 -120952232 - L2 LINE L2 -5 3308 3261 180 0 0 0 chr12 23330278 23330298 -120952191 + (CA)n Simple_repeat Simple_repeat 1 20 0 282 306 75 0 chr12 23330478 23330612 -120951877 - MIR SINE MIR 0 262 119 307 136 29 37 chr12 23330714 23330793 -120951696 + L1MB2 LINE L1 6077 6161 -10 387 0 0 0 chr12 23330801 23330844 -120951645 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 391 191 73 0 chr12 23330854 23330964 -120951525 + L1ME4a LINE L1 5798 5915 -206 326 263 17 8 chr12 23330978 23331096 -120951393 + (TA)n Simple_repeat Simple_repeat 1 119 0 1069 142 0 0 chr12 23331096 23331251 -120951238 - AluSg/x SINE Alu -18 294 140 478 208 10 10 chr12 23331418 23331514 -120950975 + L1 LINE L1 1499 1594 -5902 * 6153 192 23 19 chr12 23331502 23331663 -120950826 + L1 LINE L1 3412 3571 -3994 1616 188 98 19 chr12 23331663 23332030 -120950459 + MSTD LTR MaLR 1 396 0 6153 192 23 19 chr12 23332030 23333386 -120949103 + L1 LINE L1 3571 4942 -2623 4579 185 25 21 chr12 23333391 23334094 -120948395 + L1 LINE L1 5703 6415 -1160 1782 165 0 3 chr12 23334094 23334407 -120948082 - AluJb SINE Alu 0 312 1 4579 185 25 21 chr12 23334407 23334799 -120947690 + L1 LINE L1 6415 6804 -771 3948 131 18 31 chr12 23334811 23334886 -120947603 + L1MA7 LINE L1 5254 5328 -963 2295 125 0 0 chr12 23334886 23335198 -120947291 + AluSx SINE Alu 1 312 0 3948 131 18 31 chr12 23335198 23335831 -120946658 + L1MA7 LINE L1 5328 5953 -338 959 169 0 0 chr12 23335831 23335979 -120946510 + AluSg/x SINE Alu 133 280 -30 386 85 17 0 chr12 23335981 23336040 -120946449 + (TTCC)n Simple_repeat Simple_repeat 3 62 0 198 103 0 0 chr12 23336045 23336074 -120946415 + (A)n Simple_repeat Simple_repeat 1 29 0 680 147 93 20 chr12 23336091 23336241 -120946248 + L1MA7 LINE L1 5936 6096 -195 1758 37 9 0 chr12 23336241 23336491 -120945998 + L1PA7 LINE L1 5923 6174 0 1039 104 6 16 chr12 23336495 23336678 -120945811 + L1MA7 LINE L1 6111 6291 0 27 0 0 0 chr12 23337249 23337276 -120945213 + AT_rich Low_complexity Low_complexity 1 27 0 1564 162 0 12 chr12 23337545 23337798 -120944691 - AluJb SINE Alu -62 250 1 2535 154 7 23 chr12 23337939 23338368 -120944121 + MSTB LTR MaLR 5 426 0 257 67 0 22 chr12 23339413 23339458 -120943031 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 351 253 58 95 chr12 23340024 23340214 -120942275 - MIR SINE MIR 0 262 80 266 246 16 0 chr12 23340653 23340714 -120941775 - L2 LINE L2 -6 3307 3246 425 192 36 4 chr12 23340796 23341025 -120941464 + (TA)n Simple_repeat Simple_repeat 1 236 0 1523 162 35 28 chr12 23341144 23341428 -120941061 - AluJb SINE Alu -26 286 1 5402 86 116 37 chr12 23342348 23343428 -120939061 - MER11A LTR ERVK 0 1266 1 4115 86 9 0 chr12 23343476 23344025 -120938464 + MER41A LTR ERV1 1 554 0 5476 153 131 4 chr12 23344112 23345077 -120937412 + MER41A-int LTR ERV1 3 1089 -4857 351 0 0 0 chr12 23345077 23345116 -120937373 + (TG)n Simple_repeat Simple_repeat 2 40 0 11258 151 60 35 chr12 23345116 23345418 -120937071 + MER41A-int LTR ERV1 1359 1652 -3363 2352 86 0 3 chr12 23345418 23345720 -120936769 - AluSc SINE Alu -8 301 1 11258 151 60 35 chr12 23345720 23346621 -120935868 + MER41A-int LTR ERV1 1652 2530 -2485 2155 140 0 0 chr12 23346621 23346928 -120935561 - AluSx SINE Alu -5 307 1 11258 151 60 35 chr12 23346928 23348195 -120934294 + MER41A-int LTR ERV1 2530 4384 -631 2803 95 5 3 chr12 23348299 23348687 -120933802 + MER41A LTR ERV1 166 554 0 308 336 45 37 chr12 23349305 23349439 -120933050 - L2 LINE L2 -15 3298 3164 680 91 30 0 chr12 23349439 23349538 -120932951 + MER51D LTR ERV1 482 583 -74 684 273 128 37 chr12 23349982 23350669 -120931820 - L1ME LINE L1 -397 5765 5009 2642 175 77 39 chr12 23350714 23351903 -120930586 - L1MC2 LINE L1 -185 6159 5016 1867 133 0 0 chr12 23351903 23352159 -120930330 - AluSx SINE Alu -14 298 43 2642 175 77 39 chr12 23352159 23352195 -120930294 - L1MC2 LINE L1 -1328 5016 4983 1921 150 17 0 chr12 23352195 23352488 -120930001 - AluJo SINE Alu -14 298 1 2642 175 77 39 chr12 23352488 23352663 -120929826 - L1MC2 LINE L1 -1361 4983 4550 500 340 58 19 chr12 23352672 23353190 -120929299 - L1ME LINE L1 -1112 5034 4497 2402 77 3 0 chr12 23353512 23353823 -120928666 + AluSx SINE Alu 1 312 0 235 236 0 0 chr12 23354401 23354456 -120928033 + (TCG)n Simple_repeat Simple_repeat 2 56 0 189 174 153 122 chr12 23357164 23357262 -120925227 - MIR SINE MIR -42 220 120 614 294 32 0 chr12 23357950 23358137 -120924352 + MIR SINE MIR 1 193 -69 191 346 168 0 chr12 23358164 23358265 -120924224 - L2 LINE L2 -40 3232 3115 24 53 0 0 chr12 23358760 23358798 -120923691 + AT_rich Low_complexity Low_complexity 1 38 0 215 330 102 8 chr12 23359452 23359570 -120922919 - L2 LINE L2 -224 3048 2920 2139 106 7 7 chr12 23359620 23359942 -120922547 - AluSx SINE Alu 0 312 1 442 250 22 101 chr12 23360057 23360209 -120922280 - MER112 DNA MER1_type -6 254 130 2472 61 0 0 chr12 23360209 23360504 -120921985 - AluSp SINE Alu -16 297 3 442 250 22 101 chr12 23360504 23360619 -120921870 - MER112 DNA MER1_type -130 130 8 203 331 101 14 chr12 23360632 23360771 -120921718 - L2 LINE L2 -687 2627 2477 312 222 151 32 chr12 23361365 23361491 -120920998 - L1ME4a LINE L1 -187 5934 5794 1581 165 30 20 chr12 23361531 23361828 -120920661 - AluJo SINE Alu -7 305 6 1257 241 79 18 chr12 23361838 23362282 -120920207 - L1ME3A LINE L1 -222 6017 5547 729 112 0 0 chr12 23362291 23362398 -120920091 - AluSq/x SINE Alu -206 107 1 1954 254 160 25 chr12 23362398 23363505 -120918984 - L1ME3A LINE L1 -1331 4884 3659 240 184 184 10 chr12 23363527 23363625 -120918864 - L1ME3A LINE L1 -2827 3388 3274 507 161 34 2 chr12 23363628 23363744 -120918745 - AluJb SINE Alu -16 296 185 189 0 0 0 chr12 23363744 23363765 -120918724 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 507 161 34 2 chr12 23363765 23363884 -120918605 - AluJb SINE Alu -127 185 1 254 240 40 10 chr12 23363910 23364010 -120918479 - L1ME3A LINE L1 -2982 3233 3131 264 198 21 42 chr12 23364609 23364705 -120917784 - L1ME3A LINE L1 -3197 3018 2925 35 41 0 0 chr12 23364716 23364765 -120917724 + AT_rich Low_complexity Low_complexity 1 49 0 463 297 34 29 chr12 23364766 23364941 -120917548 - L1M4 LINE L1 -3295 2851 2676 1314 169 69 15 chr12 23364954 23365214 -120917275 + AluJb SINE Alu 30 303 -9 837 240 74 4 chr12 23365382 23365611 -120916878 - L1M4 LINE L1 -3587 2559 2315 1606 164 19 0 chr12 23365637 23365905 -120916584 - MER2 DNA MER2_type -1 344 72 351 193 0 72 chr12 23365948 23366031 -120916458 - MER2 DNA MER2_type -261 84 8 1112 253 28 70 chr12 23366039 23366427 -120916062 - L1ME3A LINE L1 -5988 408 37 334 259 135 39 chr12 23366687 23367050 -120915439 + HAL1 LINE L1 2002 2399 -108 2210 118 0 0 chr12 23367285 23367581 -120914908 - AluSx SINE Alu -16 296 1 291 326 79 26 chr12 23367862 23368129 -120914360 - L1MC5 LINE L1 -173 7788 7508 641 176 53 15 chr12 23368245 23368376 -120914113 - AluSq/x SINE Alu -176 136 1 2147 93 17 0 chr12 23368424 23368713 -120913776 + AluSq SINE Alu 1 294 -19 363 246 52 45 chr12 23368929 23369063 -120913426 - L1MC5 LINE L1 -818 7143 7009 26 74 0 0 chr12 23369532 23369586 -120912903 + AT_rich Low_complexity Low_complexity 1 54 0 858 230 72 8 chr12 23369634 23369869 -120912620 - MIR SINE MIR -11 251 2 1634 190 43 30 chr12 23370123 23370606 -120911883 - MER90 LTR ERV1 -1 613 79 21 36 0 0 chr12 23370766 23370794 -120911695 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 23372204 23372226 -120910263 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr12 23373179 23373202 -120909287 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 22 0 0 0 chr12 23373467 23373489 -120909000 + AT_rich Low_complexity Low_complexity 1 22 0 343 177 186 40 chr12 23373620 23373744 -120908745 - Charlie1 DNA MER1_type 0 2761 2620 * 971 246 58 9 chr12 23373729 23373953 -120908536 - Charlie1 DNA MER1_type -2525 236 2 22 0 0 0 chr12 23374015 23374037 -120908452 + AT_rich Low_complexity Low_complexity 1 22 0 1662 148 21 0 chr12 23374611 23374901 -120907588 - L1MA4 LINE L1 -5 6295 6000 207 278 83 28 chr12 23375386 23375458 -120907031 - L2 LINE L2 -1007 2307 2232 6250 182 27 40 chr12 23377083 23379719 -120902770 - L1MC1 LINE L1 -1 6332 3740 37 39 0 0 chr12 23379725 23379776 -120902713 + AT_rich Low_complexity Low_complexity 1 51 0 4219 196 31 32 chr12 23379933 23379968 -120902521 - L1MB2 LINE L1 -4 6167 6133 2136 201 37 61 chr12 23379968 23380591 -120901898 - LTR9 LTR ERV1 0 612 5 4219 196 31 32 chr12 23380591 23380712 -120901777 - L1MB2 LINE L1 -38 6133 6013 1995 99 13 16 chr12 23380712 23381015 -120901474 - AluSx SINE Alu -10 302 1 4219 196 31 32 chr12 23381015 23382761 -120899728 - L1MB2 LINE L1 -158 6013 4269 1034 209 13 5 chr12 23382991 23383291 -120899198 + MLT1A1 LTR MaLR 1 365 0 2064 102 10 7 chr12 23384004 23384297 -120898192 - AluSq SINE Alu -19 294 1 2320 109 0 0 chr12 23384354 23384666 -120897823 - AluSq SINE Alu -1 312 1 183 386 48 35 chr12 23384783 23384928 -120897561 - MIR3 SINE MIR -12 196 50 206 231 0 0 chr12 23386026 23386065 -120896424 + (TG)n Simple_repeat Simple_repeat 1 39 0 602 296 109 87 chr12 23386403 23386852 -120895637 - MLT1K LTR MaLR -41 547 89 546 262 28 21 chr12 23387003 23387144 -120895345 + MER5B DNA MER1_type 2 143 -35 551 221 79 57 chr12 23387144 23387487 -120895002 - MER31A-int LTR ERV1 -4507 429 22 2334 143 70 15 chr12 23387524 23387984 -120894505 - MER31A LTR ERV1 0 485 1 621 226 81 68 chr12 23388519 23388740 -120893749 + MIR SINE MIR 3 226 -36 189 0 0 0 chr12 23389064 23389085 -120893404 + (A)n Simple_repeat Simple_repeat 1 21 0 30 45 0 0 chr12 23389671 23389715 -120892774 + AT_rich Low_complexity Low_complexity 1 44 0 198 261 0 0 chr12 23389731 23389777 -120892712 + MIR SINE MIR 104 149 -113 2109 109 0 62 chr12 23391097 23391417 -120891072 - AluSq SINE Alu -13 300 1 1710 168 10 29 chr12 23391417 23391727 -120890762 - AluJo SINE Alu -8 304 1 26 0 0 0 chr12 23393183 23393209 -120889280 + AT_rich Low_complexity Low_complexity 1 26 0 237 427 0 19 chr12 23394129 23394232 -120888257 + MIR SINE MIR 20 120 -142 282 332 39 33 chr12 23394252 23394412 -120888077 + MER5B DNA MER1_type 15 184 -5 846 242 47 5 chr12 23394550 23394761 -120887728 - MER58A DNA MER1_type -1 223 4 183 80 0 0 chr12 23395804 23395829 -120886660 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr12 23395984 23396006 -120886483 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 23397546 23397567 -120884922 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 23397767 23397795 -120884694 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 23398136 23398159 -120884330 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr12 23398342 23398368 -120884121 + AT_rich Low_complexity Low_complexity 1 26 0 555 137 0 0 chr12 23398764 23398859 -120883630 + FLAM_C SINE Alu 48 142 -1 27 29 0 0 chr12 23398904 23398938 -120883551 + AT_rich Low_complexity Low_complexity 1 34 0 28 61 0 0 chr12 23398999 23399048 -120883441 + AT_rich Low_complexity Low_complexity 1 49 0 2603 36 0 10 chr12 23400586 23400893 -120881596 + AluY SINE Alu 1 304 -7 226 272 117 19 chr12 23400950 23401053 -120881436 - MIR SINE MIR -50 212 100 26 0 0 0 chr12 23401400 23401426 -120881063 + AT_rich Low_complexity Low_complexity 1 26 0 553 105 0 0 chr12 23402060 23402136 -120880353 + AluSg/x SINE Alu 215 290 -19 468 252 39 10 chr12 23402857 23402960 -120879529 + L2 LINE L2 3208 3313 0 1524 173 52 24 chr12 23404101 23404390 -120878099 - AluJb SINE Alu -15 297 1 1756 184 3 7 chr12 23404392 23404686 -120877803 - AluJo SINE Alu -19 293 1 7848 87 6 3 chr12 23405043 23406938 -120875551 - L1PA7 LINE L1 -4 6150 4255 384 306 33 22 chr12 23407261 23407444 -120875045 + L2 LINE L2 1802 1986 -1328 2004 205 35 73 chr12 23408052 23408628 -120873861 - MLT2B3 LTR ERVL 0 554 1 2001 142 30 0 chr12 23408725 23409021 -120873468 - AluSx SINE Alu -7 305 1 5258 193 65 21 chr12 23410527 23411916 -120870573 - Charlie1a DNA MER1_type -1 1454 1 287 211 118 0 chr12 23412090 23412166 -120870323 - MIR SINE MIR -101 161 77 669 130 89 16 chr12 23412283 23412406 -120870083 - FRAM SINE Alu -14 162 31 382 314 34 19 chr12 23412491 23412662 -120869827 - MIR SINE MIR -55 153 37 252 0 0 0 chr12 23415876 23415904 -120866585 + (T)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr12 23417932 23417960 -120864529 + AT_rich Low_complexity Low_complexity 1 28 0 1809 233 80 75 chr12 23420213 23420660 -120861829 - L1MC4 LINE L1 -502 7540 7086 210 37 0 0 chr12 23420660 23420687 -120861802 + (CCTA)n Simple_repeat Simple_repeat 1 27 0 1809 233 80 75 chr12 23420687 23421103 -120861386 - L1MC4 LINE L1 -956 7086 6673 239 35 0 0 chr12 23421149 23421178 -120861311 - U2 snRNA snRNA -152 36 8 3274 147 200 81 chr12 23421318 23422630 -120859859 - pTR5 LTR ERV1 0 1683 35 781 190 113 129 chr12 23422659 23423138 -120859351 - L1MC4a LINE L1 -496 7312 6842 437 162 0 0 chr12 23423140 23423214 -120859275 + LTR9 LTR ERV1 1 74 -538 1276 138 5 15 chr12 23423219 23423415 -120859074 + AluSx SINE Alu 11 204 -108 1207 172 92 164 chr12 23423827 23424173 -120858316 - L1MC4a LINE L1 -600 7208 6838 2868 164 59 24 chr12 23424173 23424252 -120858237 + LTR9 LTR ERV1 1 76 -536 2083 132 3 10 chr12 23424252 23424555 -120857934 + AluSx SINE Alu 11 311 -1 2868 164 59 24 chr12 23424555 23425066 -120857423 + LTR9 LTR ERV1 76 612 0 1207 172 92 164 chr12 23425066 23425335 -120857154 - L1MC4a LINE L1 -970 6838 6724 2123 125 0 0 chr12 23425335 23425632 -120856857 - AluSc SINE Alu -12 297 1 1207 172 92 164 chr12 23425632 23425704 -120856785 - L1MC4a LINE L1 -1084 6724 6648 428 261 126 0 chr12 23425735 23425934 -120856555 - L1MC4 LINE L1 -2 8040 7817 460 246 103 27 chr12 23425937 23426161 -120856328 - L1MDa LINE L1 -4712 1828 1588 535 294 75 7 chr12 23426204 23426615 -120855874 - L1M4 LINE L1 -3594 2552 2114 22 35 0 0 chr12 23426984 23427013 -120855476 + AT_rich Low_complexity Low_complexity 1 29 0 284 322 11 0 chr12 23428542 23428629 -120853860 + MIR3 SINE MIR 111 198 -10 3495 156 43 2 chr12 23428642 23429252 -120853237 - MER41B LTR ERV1 0 635 1 682 190 17 29 chr12 23429546 23429720 -120852769 + MLT1A2 LTR MaLR 5 176 -198 846 208 27 65 chr12 23429854 23430114 -120852375 + MLT1A2 LTR MaLR 117 366 -8 4217 42 12 32 chr12 23431024 23431593 -120850896 - LTR6B LTR ERV1 0 558 1 362 339 71 47 chr12 23431898 23432152 -120850337 - L1ME3 LINE L1 -258 5904 5645 561 186 0 0 chr12 23432212 23432309 -120850180 + Tigger3(Golem) DNA MER2_type 6 102 -2927 3789 136 61 3 chr12 23432312 23433012 -120849477 + Tigger3(Golem) DNA MER2_type 2287 3027 -2 435 264 92 22 chr12 23433014 23433241 -120849248 + ERVL LTR ERVL 155 397 -4599 * 1287 306 60 24 chr12 23433239 23433775 -120848714 + ERVL LTR ERVL 969 1523 -3473 1498 353 71 25 chr12 23434025 23435568 -120846921 + ERVL LTR ERVL 2656 4269 -1216 25 0 0 0 chr12 23436154 23436179 -120846310 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr12 23436466 23436488 -120846001 + (GGGTG)n Simple_repeat Simple_repeat 3 24 0 255 269 114 30 chr12 23437114 23437378 -120845111 - L1ME LINE L1 -299 5822 5537 2251 124 0 6 chr12 23437468 23437782 -120844707 - AluSx SINE Alu 0 312 1 518 343 77 33 chr12 23437895 23438620 -120843869 - L2 LINE L2 -40 3232 2472 926 70 0 0 chr12 23438939 23439053 -120843436 - AluSc SINE Alu -185 124 11 1260 112 0 0 chr12 23439053 23439223 -120843266 + AluSc SINE Alu 140 309 0 840 252 42 44 chr12 23439940 23440396 -120842093 - L1MC5 LINE L1 -106 7855 7401 410 319 190 0 chr12 23440790 23440953 -120841536 + MER91A DNA MER1_type 2 195 -1 251 320 75 65 chr12 23440993 23441613 -120840876 + L2 LINE L2 1856 2530 -784 407 266 115 14 chr12 23441626 23441765 -120840724 - L2 LINE L2 -40 3273 3121 196 335 74 56 chr12 23441825 23442109 -120840380 + L2 LINE L2 2625 2913 -401 604 285 65 14 chr12 23442431 23442645 -120839844 + MIR SINE MIR 23 247 -15 2185 122 23 0 chr12 23442872 23443175 -120839314 - AluSq SINE Alu -1 312 3 2756 0 0 3 chr12 23443219 23443519 -120838970 - AluYa5 SINE Alu -12 299 1 214 310 49 98 chr12 23445228 23445431 -120837058 + L2 LINE L2 2689 2881 -433 1375 183 84 113 chr12 23445457 23445912 -120836577 + MLT1E1 LTR MaLR 168 608 -46 765 175 0 0 chr12 23445912 23446032 -120836457 - FLAM_A SINE Alu -12 121 2 1375 183 84 113 chr12 23446032 23446078 -120836411 + MLT1E1 LTR MaLR 608 654 0 286 254 8 8 chr12 23446078 23446200 -120836289 + GA-rich Low_complexity Low_complexity 2 123 0 519 292 0 9 chr12 23446515 23446741 -120835748 - L1ME LINE L1 -817 5329 5106 322 298 120 14 chr12 23446826 23447101 -120835388 - L1ME LINE L1 -1198 4948 4645 372 291 30 19 chr12 23447272 23447540 -120834949 - L1ME LINE L1 -1499 4647 4377 1790 188 0 0 chr12 23447564 23447851 -120834638 - AluSx SINE Alu -25 287 1 612 131 0 0 chr12 23447910 23448009 -120834480 + L1PA13 LINE L1 6054 6152 -11 21 36 0 0 chr12 23448009 23448037 -120834452 + AT_rich Low_complexity Low_complexity 1 28 0 304 309 8 68 chr12 23448114 23448205 -120834284 - L1ME LINE L1 -1891 4255 4160 2319 103 3 0 chr12 23448205 23448506 -120833983 - AluSx SINE Alu -10 302 1 304 309 8 68 chr12 23448506 23448666 -120833823 - L1ME LINE L1 -1986 4160 4019 2355 67 0 0 chr12 23448940 23449260 -120833229 - AluY SINE Alu 0 320 1 189 94 0 0 chr12 23449423 23449455 -120833034 + (TG)n Simple_repeat Simple_repeat 2 33 0 203 204 0 23 chr12 23450311 23450355 -120832134 + T-rich Low_complexity Low_complexity 2 44 0 196 321 0 0 chr12 23452586 23452639 -120829850 + MER5A DNA MER1_type 62 114 -75 249 277 160 0 chr12 23453744 23453863 -120828626 + L3 LINE CR1 1186 1323 -254 244 353 209 23 chr12 23454090 23454571 -120827918 + L2 LINE L2 2656 3225 -47 291 307 0 0 chr12 23454590 23454678 -120827811 + L3 LINE CR1 1334 1421 -156 208 240 60 7 chr12 23454855 23455005 -120827484 + (TA)n Simple_repeat Simple_repeat 1 158 0 240 263 53 26 chr12 23455607 23455721 -120826768 - MLT1J LTR MaLR -44 467 351 703 201 35 30 chr12 23455735 23455904 -120826585 - MER5A DNA MER1_type -18 171 2 251 323 50 0 chr12 23455965 23456064 -120826425 - MLT1J1 LTR MaLR -284 162 59 722 216 77 0 chr12 23456094 23456302 -120826187 - L1ME1 LINE L1 -1600 4546 4323 679 209 96 23 chr12 23456313 23456490 -120825999 + L1ME1 LINE L1 4561 4750 -1396 1271 172 9 51 chr12 23456613 23456931 -120825558 + MLT1A2 LTR MaLR 4 374 0 2479 205 57 24 chr12 23456932 23458171 -120824318 + L1ME1 LINE L1 4771 6044 -122 1781 174 0 7 chr12 23458365 23458675 -120823814 - AluSx SINE Alu -2 310 3 299 341 79 47 chr12 23458790 23459339 -120823150 - L2 LINE L2 -40 3232 2658 276 322 11 0 chr12 23460029 23460116 -120822373 + MIR3 SINE MIR 111 198 -10 1854 199 67 12 chr12 23460129 23460545 -120821944 - MER41B LTR ERV1 0 635 197 2147 253 36 9 chr12 23460895 23461445 -120821044 + MLT1F1 LTR MaLR 3 567 0 203 260 40 13 chr12 23462445 23462595 -120819894 + (TA)n Simple_repeat Simple_repeat 1 154 0 318 296 0 0 chr12 23462772 23462860 -120819629 - L3 LINE CR1 -156 1421 1334 672 233 36 98 chr12 23463589 23463867 -120818622 - L1ME LINE L1 -389 5732 5474 429 235 49 37 chr12 23463943 23464105 -120818384 + MIR SINE MIR 99 262 0 976 221 16 67 chr12 23464873 23465027 -120817462 - LTR47B LTR ERVL 0 443 283 276 30 0 0 chr12 23465027 23465060 -120817429 + (TA)n Simple_repeat Simple_repeat 1 33 0 2189 98 7 0 chr12 23465060 23465366 -120817123 - AluY SINE Alu -3 308 1 976 221 16 67 chr12 23465366 23465463 -120817026 - LTR47B LTR ERVL -158 285 204 431 287 93 39 chr12 23465861 23466476 -120816013 + L1 LINE L1 4062 4719 -1427 1142 298 100 7 chr12 23466832 23467262 -120815227 - LTR33 LTR ERVL -1 520 51 834 258 36 32 chr12 23467694 23467884 -120814605 + MER58A DNA MER1_type 1 194 -2226 1912 162 11 40 chr12 23467884 23468260 -120814229 + MLT1A1 LTR MaLR 1 365 0 834 258 36 32 chr12 23468260 23468290 -120814199 + MER58A DNA MER1_type 194 222 -2 289 239 34 11 chr12 23468363 23468451 -120814038 + MER103 DNA DNA 1 90 -76 30 27 0 0 chr12 23468529 23468566 -120813923 + AT_rich Low_complexity Low_complexity 1 37 0 331 191 0 0 chr12 23469240 23469303 -120813186 - AluSp/q SINE Alu -8 295 233 2605 219 25 7 chr12 23472256 23472809 -120809680 + MER90 LTR ERV1 1 604 -10 709 193 0 0 chr12 23473603 23473722 -120808767 + FLAM_C SINE Alu 1 119 -14 663 228 49 84 chr12 23476793 23477140 -120805349 + LTR37B LTR ERV1 134 468 0 1754 194 0 0 chr12 23477146 23477445 -120805044 - AluJb SINE Alu -13 299 1 411 296 7 73 chr12 23478040 23478314 -120804175 + MER31-int LTR ERV1 1041 1296 -3640 2638 162 60 4 chr12 23479365 23480323 -120802166 + L1PA16 LINE L1 4762 5755 -401 309 120 0 0 chr12 23480427 23480477 -120802012 - L1MA1 LINE L1 -41 6261 6212 449 269 55 33 chr12 23480713 23480895 -120801594 + MIR SINE MIR 1 186 -76 583 180 0 0 chr12 23480898 23480998 -120801491 + AluJb SINE Alu 4 103 -209 1186 133 11 6 chr12 23480999 23481179 -120801310 - AluSq SINE Alu -132 181 1 21 36 0 0 chr12 23481966 23481994 -120800495 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr12 23484613 23484651 -120797838 + AT_rich Low_complexity Low_complexity 1 38 0 2658 15 2 2 chr12 23484711 23485128 -120797361 + L1P1 LINE L1 5078 5494 -661 2138 179 0 33 chr12 23485240 23485670 -120796819 + L1PA16 LINE L1 5750 6165 -1 459 222 20 20 chr12 23485943 23486096 -120796393 + L1MDa LINE L1 1396 1548 -4992 798 232 43 5 chr12 23486291 23486498 -120795991 + LTR37B LTR ERV1 1 215 -253 22 70 0 0 chr12 23486534 23486577 -120795912 + AT_rich Low_complexity Low_complexity 1 43 0 199 306 188 12 chr12 23487978 23488063 -120794426 + L2 LINE L2 3146 3245 -27 339 214 0 0 chr12 23488316 23488372 -120794117 - MER5A DNA MER1_type -130 59 4 189 0 0 0 chr12 23488585 23488606 -120793883 + (A)n Simple_repeat Simple_repeat 1 21 0 2166 126 0 0 chr12 23489681 23489990 -120792499 + AluSx SINE Alu 4 312 0 925 165 6 6 chr12 23490306 23490464 -120792025 + MER93b LTR ERV1 5 162 -211 1307 157 10 0 chr12 23490591 23490795 -120791694 + AluSx SINE Alu 12 217 -95 401 211 105 0 chr12 23490853 23490948 -120791541 + AluSg/x SINE Alu 185 289 -21 225 0 0 0 chr12 23491234 23491259 -120791230 + (TG)n Simple_repeat Simple_repeat 2 26 0 23 33 0 0 chr12 23491407 23491437 -120791052 + AT_rich Low_complexity Low_complexity 1 30 0 945 232 51 57 chr12 23491692 23491977 -120790512 - MLT1A1 LTR MaLR 0 365 161 2361 99 0 0 chr12 23491977 23492281 -120790208 - AluSx SINE Alu -8 304 1 945 232 51 57 chr12 23492281 23492439 -120790050 - MLT1A1 LTR MaLR -204 161 4 493 332 130 0 chr12 23492784 23492992 -120789497 + MIR SINE MIR 26 260 -2 485 272 106 0 chr12 23493011 23493191 -120789298 - HAL1 LINE L1 -927 1580 1382 2362 155 9 60 chr12 23493250 23493636 -120788853 + MSTC LTR MaLR 1 362 -66 3356 104 0 4 chr12 23493636 23494116 -120788373 - L1PA14 LINE L1 -4 6157 5680 2362 155 9 60 chr12 23494116 23494180 -120788309 + MSTC LTR MaLR 362 428 0 543 317 79 52 chr12 23494180 23494600 -120787889 - L1MEd LINE L1 -4902 1217 787 2141 82 7 53 chr12 23494712 23495015 -120787474 + AluSp SINE Alu 1 289 -24 473 133 0 0 chr12 23495015 23495090 -120787399 + AluSp/q SINE Alu 227 301 -12 297 0 0 0 chr12 23495588 23495621 -120786868 + (CA)n Simple_repeat Simple_repeat 1 33 0 1627 59 0 15 chr12 23495629 23495832 -120786657 - AluSc SINE Alu -16 293 94 1701 140 80 3 chr12 23495837 23496123 -120786366 - AluSx SINE Alu -4 308 1 2377 239 36 6 chr12 23496806 23497354 -120785135 - MLT1F1 LTR MaLR 0 567 3 454 139 13 0 chr12 23497600 23497679 -120784810 + LTR37B LTR ERV1 9 88 -380 1474 183 8 0 chr12 23497681 23497922 -120784567 + Charlie3 DNA MER1_type 3 245 -2465 345 196 0 0 chr12 23497963 23498019 -120784470 + Charlie3 DNA MER1_type 2644 2699 -11 3745 36 0 0 chr12 23498120 23498570 -120783919 + L1HS LINE L1 5706 6155 0 22 0 0 0 chr12 23498574 23498596 -120783893 + AT_rich Low_complexity Low_complexity 1 22 0 406 225 132 31 chr12 23499085 23499214 -120783275 - L2 LINE L2 0 3313 3172 249 108 0 0 chr12 23499771 23499808 -120782681 + (TG)n Simple_repeat Simple_repeat 2 38 0 382 283 13 68 chr12 23500656 23500848 -120781641 + MIR SINE MIR 34 216 -46 232 309 138 6 chr12 23501245 23501426 -120781063 + MIR SINE MIR 58 262 0 216 316 68 26 chr12 23501822 23501939 -120780550 - L2 LINE L2 -216 3056 2935 471 373 86 21 chr12 23502029 23502367 -120780122 - L2 LINE L2 -520 2794 2435 365 263 0 0 chr12 23502385 23502480 -120780009 - MER20B DNA MER1_type -180 603 509 796 258 107 100 chr12 23502550 23503062 -120779427 - MER20B DNA MER1_type -265 518 3 743 259 39 15 chr12 23503461 23503666 -120778823 - MER63A DNA MER1_type 0 210 1 372 225 27 18 chr12 23504755 23504866 -120777623 - L1MA9 LINE L1 0 6312 6201 1263 157 0 0 chr12 23504876 23505073 -120777416 + MER2 DNA MER2_type 1 197 -148 652 223 31 53 chr12 23505184 23505402 -120777087 - L1ME LINE L1 -440 5681 5476 429 235 49 37 chr12 23505486 23505648 -120776841 + MIR SINE MIR 99 262 0 1254 343 126 33 chr12 23506366 23506416 -120776073 - L3 LINE CR1 -13 1564 1520 1254 255 70 42 chr12 23506416 23506570 -120775919 - LTR47B LTR ERVL 0 443 295 312 27 0 0 chr12 23506570 23506607 -120775882 + (TA)n Simple_repeat Simple_repeat 1 37 0 2462 63 7 0 chr12 23506607 23506907 -120775582 - AluY SINE Alu -9 302 1 1254 255 70 42 chr12 23506907 23507182 -120775307 - LTR47B LTR ERVL -147 296 1 1254 343 126 33 chr12 23507182 23508113 -120774376 - L3 LINE CR1 -57 1520 491 363 224 82 45 chr12 23508198 23508332 -120774157 - MER103 DNA DNA -16 150 12 579 290 30 6 chr12 23508406 23508575 -120773914 - L3 LINE CR1 -1097 480 308 249 140 0 0 chr12 23509132 23509189 -120773300 + (T)n Simple_repeat Simple_repeat 1 57 0 24 0 0 0 chr12 23509738 23509762 -120772727 + AT_rich Low_complexity Low_complexity 1 24 0 255 125 0 0 chr12 23509843 23509883 -120772606 + (T)n Simple_repeat Simple_repeat 1 40 0 319 322 0 0 chr12 23510354 23510444 -120772045 - L1MC4 LINE L1 -1339 6703 6614 * 343 264 23 0 chr12 23510385 23510472 -120772017 + L1MC4 LINE L1 6615 6703 -1339 297 109 0 0 chr12 23510484 23510530 -120771959 + (GA)n Simple_repeat Simple_repeat 2 47 0 210 402 122 5 chr12 23511284 23511498 -120770991 - MIR SINE MIR -4 258 20 189 342 88 18 chr12 23511905 23512019 -120770470 + L2 LINE L2 3133 3254 -18 393 288 57 57 chr12 23513078 23513255 -120769234 - MER5B DNA MER1_type -1 177 1 3819 149 109 8 chr12 23513676 23514426 -120768063 - LTR1B LTR ERV1 0 826 1 2059 126 0 0 chr12 23515269 23515611 -120766878 - AluSx SINE Alu 0 347 6 285 321 23 87 chr12 23515679 23515978 -120766511 + LTR67 LTR ERVL 17 296 -261 481 288 46 13 chr12 23516199 23516352 -120766137 + LTR67 LTR ERVL 400 557 0 2054 118 6 13 chr12 23517381 23517694 -120764795 + AluSx SINE Alu 1 311 -1 22 56 0 0 chr12 23517743 23517779 -120764710 + AT_rich Low_complexity Low_complexity 1 36 0 235 336 25 25 chr12 23517868 23517990 -120764499 - MIR SINE MIR -1 261 140 292 260 45 104 chr12 23518457 23518611 -120763878 - MER5A DNA MER1_type -1 188 33 316 277 22 80 chr12 23518998 23519135 -120763354 + MIR SINE MIR 22 150 -112 773 207 129 39 chr12 23519171 23519427 -120763062 - L2 LINE L2 0 3313 3035 345 345 28 49 chr12 23519689 23519831 -120762658 - L2 LINE L2 0 3272 3134 21 0 0 0 chr12 23520120 23520141 -120762348 + AT_rich Low_complexity Low_complexity 1 21 0 245 276 113 63 chr12 23520410 23520649 -120761840 + MIR3 SINE MIR 2 257 -5 * 992 318 42 58 chr12 23520641 23521286 -120761203 + L2 LINE L2 2433 3060 -212 288 329 95 7 chr12 23521744 23521881 -120760608 + L2 LINE L2 3165 3313 0 1925 138 30 0 chr12 23523008 23523306 -120759183 + AluJb SINE Alu 1 307 -5 1893 210 69 21 chr12 23523605 23524086 -120758403 - L1ME1 LINE L1 0 6166 5663 1501 236 83 23 chr12 23524085 23524628 -120757861 - L1M3 LINE L1 -617 5566 4853 * 285 138 0 69 chr12 23524678 23524736 -120757753 + MLT1B LTR MaLR 1 54 -336 2441 246 103 29 chr12 23524749 23525898 -120756591 - L1ME1 LINE L1 -803 5343 4041 1921 165 23 33 chr12 23525898 23526291 -120756198 + MLT1B LTR MaLR 2 390 0 2441 246 103 29 chr12 23526291 23526504 -120755985 - L1ME1 LINE L1 -2105 4041 3845 21 71 0 0 chr12 23527625 23527667 -120754822 + AT_rich Low_complexity Low_complexity 1 42 0 618 81 0 0 chr12 23527667 23527754 -120754735 - L1MA1 LINE L1 -4 6298 6212 542 230 68 79 chr12 23527989 23528171 -120754318 + MIR SINE MIR 1 184 -78 2034 153 0 10 chr12 23528171 23528485 -120754004 + AluJb SINE Alu 2 312 0 1846 122 4 0 chr12 23528487 23528749 -120753740 + AluSp SINE Alu 43 305 -8 542 230 68 79 chr12 23528749 23528828 -120753661 + MIR SINE MIR 185 262 0 349 280 9 0 chr12 23528844 23528951 -120753538 + (TA)n Simple_repeat Simple_repeat 2 109 0 195 186 0 0 chr12 23528951 23528994 -120753495 + GA-rich Low_complexity Low_complexity 2 44 0 256 329 105 20 chr12 23529060 23529212 -120753277 + MIR SINE MIR 98 262 0 1932 142 4 0 chr12 23529300 23529581 -120752908 + AluJo SINE Alu 1 282 -30 212 0 36 0 chr12 23529584 23529612 -120752877 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 288 284 21 67 chr12 23529830 23530115 -120752374 + L1MC4a LINE L1 4881 5152 -994 188 33 0 33 chr12 23530118 23530148 -120752341 + (TA)n Simple_repeat Simple_repeat 1 29 0 21 36 0 0 chr12 23530331 23530359 -120752130 + AT_rich Low_complexity Low_complexity 1 28 0 451 246 17 29 chr12 23530359 23530534 -120751955 + L1MC4a LINE L1 5255 5427 -2381 1164 278 13 53 chr12 23530567 23531113 -120751376 + L1MC4a LINE L1 5548 6071 -1737 23 33 0 0 chr12 23532565 23532595 -120749894 + AT_rich Low_complexity Low_complexity 1 30 0 301 210 25 0 chr12 23533054 23533135 -120749354 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 1020 209 24 0 chr12 23533929 23534140 -120748349 - MER20 DNA MER1_type -3 216 1 843 227 25 128 chr12 23535482 23535880 -120746609 - LTR37B LTR ERV1 -1 467 132 1019 191 67 0 chr12 23535880 23536089 -120746400 + MER58A DNA MER1_type 1 223 -1 843 227 25 128 chr12 23536089 23536205 -120746284 - LTR37B LTR ERV1 -336 132 6 21 0 0 0 chr12 23536600 23536621 -120745868 + AT_rich Low_complexity Low_complexity 1 21 0 2299 167 121 13 chr12 23537880 23538336 -120744153 - MLT1D LTR MaLR 0 505 1 35 54 0 14 chr12 23538434 23538481 -120744008 + AT_rich Low_complexity Low_complexity 1 48 -25 1160 8 15 0 chr12 23538481 23538615 -120743874 - L1PA3 LINE L1 0 6155 6020 35 54 0 14 chr12 23538615 23538641 -120743848 + AT_rich Low_complexity Low_complexity 48 73 0 1144 272 95 55 chr12 23538710 23539459 -120743030 - LTR1B LTR ERV1 -15 811 33 231 284 57 0 chr12 23539468 23539556 -120742933 - L1MC/D LINE L1 -2000 5808 5716 1786 159 35 0 chr12 23540241 23540530 -120741959 - AluJb SINE Alu -13 299 1 786 243 42 34 chr12 23542113 23542376 -120740113 + MLT1C LTR MaLR 6 270 -197 1798 128 100 37 chr12 23542384 23542587 -120739902 + THE1C LTR MaLR 1 237 -138 2336 186 196 47 chr12 23542587 23543306 -120739183 - LTR1B LTR ERV1 0 826 1 1798 128 100 37 chr12 23543306 23543453 -120739036 + THE1C LTR MaLR 237 373 -2 627 261 7 13 chr12 23543462 23543615 -120738874 + MLT1C LTR MaLR 316 467 0 959 243 15 0 chr12 23544302 23544508 -120737981 - MIR SINE MIR -9 253 45 754 119 200 19 chr12 23544508 23544668 -120737821 - MER53 DNA DNA 0 189 1 21 0 0 0 chr12 23544719 23544740 -120737749 + AT_rich Low_complexity Low_complexity 1 21 0 288 0 0 0 chr12 23545653 23545685 -120736804 + (CA)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr12 23546774 23546795 -120735694 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 246 105 26 0 chr12 23546999 23547037 -120735452 + Alu SINE Alu 2 40 -268 1693 141 24 31 chr12 23547037 23547327 -120735162 + AluJo SINE Alu 11 298 -14 332 292 117 83 chr12 23547387 23547822 -120734667 + LTR67 LTR ERVL 108 557 0 199 416 8 0 chr12 23548196 23548321 -120734168 + MIR3 SINE MIR 76 201 -7 183 184 0 0 chr12 23548332 23548370 -120734119 + (TA)n Simple_repeat Simple_repeat 1 38 0 242 329 24 0 chr12 23549222 23549304 -120733185 + MIR3 SINE MIR 118 201 -7 350 347 27 14 chr12 23550375 23550522 -120731967 + MIR SINE MIR 106 254 -8 212 250 32 16 chr12 23551265 23551389 -120731100 + (TA)n Simple_repeat Simple_repeat 1 126 0 270 0 0 0 chr12 23551402 23551432 -120731057 + (TA)n Simple_repeat Simple_repeat 2 31 0 457 294 172 5 chr12 23552514 23552718 -120729771 + L2 LINE L2 1848 2085 -1229 507 99 0 0 chr12 23552758 23552829 -120729660 + AluS SINE Alu 1 71 -242 485 262 18 3 chr12 23552853 23553025 -120729464 + HERVL LTR ERVL 5109 5285 -203 743 290 157 52 chr12 23553055 23553476 -120729013 + MLT1H LTR MaLR 69 533 -16 382 345 47 7 chr12 23553916 23554064 -120728425 + LTR67 LTR ERVL 2 155 -402 8339 210 63 47 chr12 23554067 23555193 -120727296 + HERVL LTR ERVL 3384 4558 -1206 7472 29 6 0 chr12 23555193 23556620 -120725869 - L1PA4 LINE L1 -8 6147 4717 8339 210 63 47 chr12 23556620 23557586 -120724903 + HERVL LTR ERVL 4558 5507 -257 3396 249 132 50 chr12 23557588 23559434 -120723055 - L1MEc LINE L1 -3449 2766 1073 5097 133 23 20 chr12 23559434 23560787 -120721702 - L1PA16 LINE L1 -9 6157 4797 3396 249 132 50 chr12 23560787 23561314 -120721175 - L1MEc LINE L1 -5142 1073 218 2309 116 0 3 chr12 23561314 23561625 -120720864 + AluSg SINE Alu 1 310 0 3396 249 132 50 chr12 23561625 23561722 -120720767 - L1MEc LINE L1 -5997 218 130 1525 151 13 25 chr12 23561722 23562034 -120720455 + MER4E LTR ERV1 1 296 -470 1964 71 0 12 chr12 23562136 23562391 -120720098 - AluY SINE Alu -59 252 1 710 237 104 14 chr12 23562557 23562920 -120719569 + HsTC2 DNA Tc2 1288 1895 -3 1298 260 125 8 chr12 23562925 23563405 -120719084 + Charlie7 DNA MER1_type 150 685 -1927 938 180 20 0 chr12 23563574 23563724 -120718765 - FRAM SINE Alu -13 153 1 209 297 171 18 chr12 23563745 23563856 -120718633 + L2 LINE L2 3128 3255 -17 432 0 0 0 chr12 23564131 23564179 -120718310 + (TG)n Simple_repeat Simple_repeat 2 49 0 546 328 68 4 chr12 23564585 23564820 -120717669 + MIR SINE MIR 1 250 -12 503 183 11 103 chr12 23564929 23565104 -120717385 - MLT2C1 LTR ERVL -41 356 198 2347 103 0 3 chr12 23565107 23565418 -120717071 - AluSx SINE Alu -2 310 1 1815 170 23 23 chr12 23565955 23566297 -120716192 + MER2 DNA MER2_type 2 343 -1 498 33 0 0 chr12 23566299 23566359 -120716130 - AluSp/q SINE Alu -18 295 236 2376 62 0 7 chr12 23566885 23567174 -120715315 - AluY SINE Alu -24 287 1 464 160 0 50 chr12 23567274 23567374 -120715115 + AluJ/FRAM SINE Alu 218 312 0 329 238 0 0 chr12 23567875 23567938 -120714551 + Tigger3(Golem) DNA MER2_type 1 63 -2966 * 552 139 67 170 chr12 23567937 23568102 -120714387 + Tigger3(Golem) DNA MER2_type 2879 3026 -3 23 0 0 0 chr12 23568167 23568190 -120714299 + AT_rich Low_complexity Low_complexity 1 23 0 2625 98 3 8 chr12 23568250 23568616 -120713873 + THE1B LTR MaLR 1 364 0 10106 108 34 40 chr12 23568616 23570206 -120712283 + THE1B-int LTR MaLR 1 1580 0 2558 108 14 8 chr12 23570206 23570568 -120711921 + THE1B LTR MaLR 1 364 0 1550 211 82 3 chr12 23570637 23570993 -120711496 - MER61C LTR ERV1 -36 398 15 243 216 0 0 chr12 23570972 23571023 -120711466 - LTR28 LTR ERV1 -969 51 1 * 1705 190 3 25 chr12 23571080 23571396 -120711093 - AluJb SINE Alu -2 310 2 224 333 70 9 chr12 23571412 23571526 -120710963 - MIR SINE MIR -56 206 86 665 261 182 50 chr12 23572144 23572524 -120709965 - L2 LINE L2 -48 3265 2836 1810 174 22 28 chr12 23572562 23572713 -120709776 + MLT1A1 LTR MaLR 6 156 -209 2316 109 0 0 chr12 23572713 23573017 -120709472 + AluSg SINE Alu 1 304 -6 1810 174 22 28 chr12 23573017 23573227 -120709262 + MLT1A1 LTR MaLR 156 365 0 190 291 0 0 chr12 23573322 23573377 -120709112 + L2 LINE L2 3214 3268 -4 187 268 89 0 chr12 23573575 23573631 -120708858 - L2 LINE L2 -11 3261 3201 2327 65 0 56 chr12 23573891 23574212 -120708277 + AluY SINE Alu 1 303 -8 2137 260 62 39 chr12 23574576 23575065 -120707424 + L2 LINE L2 2111 2626 -688 2226 119 0 0 chr12 23575065 23575360 -120707129 - AluSx SINE Alu -17 295 1 2137 260 62 39 chr12 23575360 23575646 -120706843 + L2 LINE L2 2626 2904 -410 580 122 0 19 chr12 23575646 23575753 -120706736 + (TCC)n Simple_repeat Simple_repeat 3 107 0 862 147 0 51 chr12 23575755 23575912 -120706577 - AluJo/FRAM SINE Alu -2 310 162 418 205 0 0 chr12 23575912 23575995 -120706494 - AluJ/FLAM SINE Alu -229 83 1 689 293 26 89 chr12 23575995 23576421 -120706068 + L2 LINE L2 2843 3241 -72 2308 146 13 15 chr12 23576557 23576948 -120705541 - MLT1B LTR MaLR 0 390 1 1999 141 59 5 chr12 23577121 23577511 -120704978 + L1MB4 LINE L1 5735 6145 -35 31 26 0 0 chr12 23578006 23578044 -120704445 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr12 23578472 23578504 -120703985 + AT_rich Low_complexity Low_complexity 1 32 0 658 181 14 28 chr12 23579033 23579295 -120703194 + CT-rich Low_complexity Low_complexity 1 258 0 548 278 0 0 chr12 23579297 23579430 -120703059 - FLAM_A SINE Alu 0 133 1 727 254 19 93 chr12 23581030 23581396 -120701093 - MER102b DNA MER1_type -2 339 1 305 366 101 18 chr12 23581531 23581892 -120700597 + L2 LINE L2 2659 3055 -217 887 184 65 30 chr12 23582362 23582563 -120699926 - MER3 DNA MER1_type -1 208 1 724 254 56 5 chr12 23582673 23582886 -120699603 + MER58A DNA MER1_type 1 224 0 188 320 0 0 chr12 23583234 23583284 -120699205 + MIR3 SINE MIR 132 181 -27 1420 205 67 122 chr12 23583707 23584617 -120697872 - LTR28 LTR ERV1 0 1020 1 774 128 0 45 chr12 23585069 23585248 -120697241 + (TTCC)n Simple_repeat Simple_repeat 2 172 0 527 218 17 6 chr12 23585222 23585396 -120697093 + CT-rich Low_complexity Low_complexity 1 176 0 * 250 272 54 11 chr12 23587217 23587309 -120695180 + MIR3 SINE MIR 108 203 -5 1012 81 17 26 chr12 23587598 23587834 -120694655 + (TTTC)n Simple_repeat Simple_repeat 1 234 0 21 0 0 0 chr12 23588070 23588091 -120694398 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr12 23589497 23589541 -120692948 + AT_rich Low_complexity Low_complexity 1 44 0 1630 267 121 44 chr12 23592061 23593040 -120689449 - L2 LINE L2 0 3313 2235 1622 129 146 7 chr12 23593040 23593334 -120689155 + MER44D DNA MER2_type 1 605 -4 1630 267 121 44 chr12 23593334 23593538 -120688951 - L2 LINE L2 -1078 2235 2048 702 228 16 65 chr12 23593545 23593677 -120688812 + MER5A DNA MER1_type 1 123 -66 1845 129 46 0 chr12 23593677 23593957 -120688532 - AluJo SINE Alu -19 293 1 702 228 16 65 chr12 23593957 23594008 -120688481 + MER5A DNA MER1_type 123 175 -14 28 29 0 0 chr12 23594075 23594110 -120688379 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr12 23595503 23595526 -120686963 + AT_rich Low_complexity Low_complexity 1 23 0 486 159 0 0 chr12 23599500 23599588 -120682901 + (CA)n Simple_repeat Simple_repeat 1 88 0 497 250 73 52 chr12 23599836 23600028 -120682461 + L2 LINE L2 8 203 -3111 730 207 24 24 chr12 23600035 23600199 -120682290 - MER5A DNA MER1_type 0 189 26 5789 262 144 21 chr12 23600227 23602389 -120680100 + L2 LINE L2 233 2661 -653 1992 148 0 3 chr12 23602666 23602963 -120679526 - AluJb SINE Alu -16 296 1 572 54 84 12 chr12 23602971 23603138 -120679351 + (TA)n Simple_repeat Simple_repeat 2 180 0 399 127 48 18 chr12 23603119 23603284 -120679205 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 * 25 0 0 0 chr12 23603295 23603320 -120679169 + AT_rich Low_complexity Low_complexity 1 25 0 463 298 9 0 chr12 23603652 23603766 -120678723 + L2 LINE L2 2681 2795 -519 1600 255 68 17 chr12 23603766 23604236 -120678253 + MLT1F LTR MaLR 1 494 -48 2039 130 18 0 chr12 23604244 23604575 -120677914 + L1PA16 LINE L1 5808 6144 -22 271 211 0 0 chr12 23604598 23604650 -120677839 + MLT1F LTR MaLR 498 549 0 696 317 21 12 chr12 23604676 23604919 -120677570 + L2 LINE L2 2813 3057 -256 225 154 0 0 chr12 23605405 23605444 -120677045 + A-rich Low_complexity Low_complexity 1 39 0 315 276 233 6 chr12 23605907 23606070 -120676419 + MIR SINE MIR 1 200 -62 301 303 104 21 chr12 23606074 23606315 -120676174 - LTR16C LTR ERVL 0 491 231 2366 66 0 0 chr12 23607682 23607970 -120674519 - AluY SINE Alu -23 288 1 32 121 0 0 chr12 23608625 23608832 -120673657 + AT_rich Low_complexity Low_complexity 1 207 0 4910 117 207 5 chr12 23608847 23609736 -120672753 - L1PBa LINE L1 -5183 1680 612 1117 143 48 0 chr12 23609714 23609903 -120672586 - L1PBa LINE L1 -6663 200 3 * 2135 130 0 3 chr12 23610277 23610577 -120671912 - AluSx SINE Alu -13 299 1 594 241 73 30 chr12 23610582 23610814 -120671675 + MER112 DNA MER1_type 13 254 -6 5525 92 26 7 chr12 23610971 23611777 -120670712 + L1PA8 LINE L1 5352 6172 0 23 33 0 0 chr12 23611848 23611878 -120670611 + AT_rich Low_complexity Low_complexity 1 30 0 189 328 0 0 chr12 23612726 23612784 -120669705 + MIR SINE MIR 51 108 -100 216 271 12 24 chr12 23612839 23612924 -120669565 + (CATATA)n Simple_repeat Simple_repeat 3 86 0 1949 237 112 24 chr12 23613929 23614019 -120668470 + MLT1E LTR MaLR 1 82 -511 4932 156 99 39 chr12 23614019 23614981 -120667508 - LTR28 LTR ERV1 0 1020 1 1949 237 112 24 chr12 23614981 23615435 -120667054 + MLT1E LTR MaLR 82 593 0 211 217 0 0 chr12 23615569 23615615 -120666874 + (CAATT)n Simple_repeat Simple_repeat 3 48 0 1444 174 127 62 chr12 23615815 23616200 -120666289 + MLT2D LTR ERVL 5 414 0 448 296 62 22 chr12 23616402 23616455 -120666034 + MIR SINE MIR 71 120 -142 2275 123 0 0 chr12 23616455 23616764 -120665725 - AluSx SINE Alu -3 309 1 448 296 62 22 chr12 23616764 23616889 -120665600 + MIR SINE MIR 120 256 -6 250 336 42 50 chr12 23618316 23618435 -120664054 - MIR SINE MIR -60 148 31 717 192 80 0 chr12 23618444 23618595 -120663894 - L1MB7 LINE L1 -1 6183 6021 6774 207 34 24 chr12 23618601 23620378 -120662111 - L1MB7 LINE L1 -801 5345 3550 1770 234 17 17 chr12 23620369 23620895 -120661594 - L1M4 LINE L1 -1036 5110 4479 * 400 223 4 42 chr12 23620915 23621015 -120661474 - AluJb SINE Alu -103 199 120 661 201 52 0 chr12 23621021 23621195 -120661294 - L1M4 LINE L1 -1675 4471 4289 1088 242 17 20 chr12 23621195 23621488 -120661001 + MLT1D LTR MaLR 214 505 0 686 301 71 66 chr12 23621488 23621841 -120660648 - L1M4 LINE L1 -1077 5069 4710 1387 164 134 72 chr12 23621841 23622214 -120660275 + MSTD LTR MaLR 1 396 0 686 301 71 66 chr12 23622214 23622451 -120660038 - L1M4 LINE L1 -1436 4710 4476 3011 224 11 11 chr12 23624061 23624798 -120657691 - L1 LINE L1 -1089 5057 4321 297 351 0 15 chr12 23625657 23625791 -120656698 + L3b LINE CR1 1240 1371 -212 1580 178 71 63 chr12 23625938 23626400 -120656089 + LTR37B LTR ERV1 3 468 0 243 0 0 0 chr12 23626437 23626464 -120656025 + (TG)n Simple_repeat Simple_repeat 1 27 0 306 52 35 17 chr12 23626850 23626908 -120655581 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 256 293 27 0 chr12 23627227 23627302 -120655187 + MIR3 SINE MIR 109 185 -23 290 268 0 0 chr12 23627398 23627469 -120655020 + GA-rich Low_complexity Low_complexity 4 74 0 206 147 29 0 chr12 23630055 23630089 -120652400 - MIR SINE MIR -8 254 220 22 0 0 0 chr12 23630203 23630225 -120652264 + AT_rich Low_complexity Low_complexity 1 22 0 209 242 30 15 chr12 23630282 23630348 -120652141 + GA-rich Low_complexity Low_complexity 2 68 0 241 333 16 79 chr12 23630580 23630706 -120651783 + MIR SINE MIR 20 137 -125 3765 117 16 25 chr12 23631023 23631594 -120650895 - MER61E LTR ERV1 -3 566 1 231 182 0 18 chr12 23631645 23631700 -120650789 - L1MD3 LINE L1 -10 7985 7932 1197 130 72 24 chr12 23631735 23631942 -120650547 + MER20 DNA MER1_type 1 217 -2 284 232 0 0 chr12 23631974 23632043 -120650446 + MER116 DNA Mariner 1 69 -11 519 233 80 40 chr12 23632044 23632293 -120650196 - L1MC4 LINE L1 -93 7949 7691 21 57 0 0 chr12 23633197 23633232 -120649257 + AT_rich Low_complexity Low_complexity 1 35 0 1941 214 5 10 chr12 23633316 23633731 -120648758 + L1M4 LINE L1 4870 5282 -864 6943 52 0 38 chr12 23633738 23635324 -120647165 + L1PA5 LINE L1 4599 6149 -5 2153 127 3 0 chr12 23635342 23635641 -120646848 + AluSq SINE Alu 6 305 -8 3176 270 57 86 chr12 23635677 23637906 -120644583 + L1M3b LINE L1 9 2023 -4328 2295 64 47 7 chr12 23637906 23638203 -120644286 + AluY SINE Alu 1 309 -2 3176 270 57 86 chr12 23638203 23638344 -120644145 + L1M3b LINE L1 2023 2167 -4184 931 182 0 16 chr12 23638345 23638537 -120643952 + L1M4 LINE L1 4911 5099 -1047 2167 157 51 37 chr12 23638542 23638970 -120643519 - Tigger2a DNA MER2_type 0 434 1 2885 163 6 11 chr12 23638970 23639481 -120643008 + L1MA6 LINE L1 5777 6300 0 13779 170 46 46 chr12 23639539 23639638 -120642851 + L1MA7 LINE L1 3237 3334 -4376 2234 113 0 10 chr12 23639638 23639949 -120642540 - AluSg SINE Alu -2 308 1 13779 170 46 46 chr12 23639949 23644323 -120638166 + L1MA7 LINE L1 3334 7708 -2 2465 180 28 10 chr12 23644333 23644828 -120637661 + L1M4 LINE L1 5293 5796 -388 207 139 0 0 chr12 23644885 23644921 -120637568 + (TG)n Simple_repeat Simple_repeat 2 37 0 380 294 25 8 chr12 23647170 23647289 -120635200 + MER5C DNA MER1_type 1 121 -203 255 170 0 0 chr12 23647316 23647369 -120635120 + MER5C DNA MER1_type 208 260 -64 2030 102 0 4 chr12 23647370 23647635 -120634854 + AluSx SINE Alu 3 266 -46 1667 158 20 41 chr12 23647909 23648250 -120634239 + THE1C LTR MaLR 1 334 -41 1128 135 0 0 chr12 23649875 23650067 -120632422 + L1MA4 LINE L1 6103 6294 -6 654 235 114 71 chr12 23650980 23651304 -120631185 - MER102b DNA MER1_type -3 338 1 263 333 61 9 chr12 23651807 23651921 -120630568 + MLT1K LTR MaLR 103 222 -366 320 241 45 45 chr12 23651927 23652060 -120630429 - MLT1K LTR MaLR -7 581 449 334 267 46 46 chr12 23652593 23652724 -120629765 + L2 LINE L2 2510 2640 -674 1393 207 61 51 chr12 23652738 23653149 -120629340 - MLT1C LTR MaLR -45 422 8 877 300 90 26 chr12 23653168 23653760 -120628729 + L2 LINE L2 2637 3282 -31 1080 210 22 121 chr12 23653760 23654165 -120628324 - MLT1A1 LTR MaLR 0 365 1 877 300 90 26 chr12 23654165 23654198 -120628291 + L2 LINE L2 3282 3311 -2 4637 125 55 76 chr12 23656076 23656994 -120625495 + MER4D LTR ERV1 1 898 -5 2819 224 85 16 chr12 23657239 23657930 -120624559 - MER21B LTR ERV1 -124 739 1 2260 159 52 24 chr12 23658321 23658743 -120623746 + Tigger2a DNA MER2_type 1 434 0 519 302 49 69 chr12 23658918 23659369 -120623120 - L1ME LINE L1 -465 5697 5258 685 303 25 33 chr12 23661382 23661626 -120620863 + MIR SINE MIR 2 243 -19 236 111 0 22 chr12 23661907 23661952 -120620537 + L1MA8 LINE L1 5785 5828 -340 910 126 14 21 chr12 23661952 23662095 -120620394 + AluSc SINE Alu 165 306 -3 510 182 10 0 chr12 23662095 23662194 -120620295 + L1MA8 LINE L1 5828 5927 -364 992 165 156 31 chr12 23662195 23662548 -120619941 - MSTC LTR MaLR 0 428 1 4046 234 82 90 chr12 23662548 23664094 -120618395 - MSTC-int LTR MaLR 0 1735 203 2147 115 0 20 chr12 23664372 23664676 -120617813 + AluSx SINE Alu 5 302 -10 1049 267 16 0 chr12 23665249 23665560 -120616929 + L1ME LINE L1 5457 5772 -390 1303 328 46 12 chr12 23665560 23666300 -120616189 + L1M3a LINE L1 529 1270 -5033 2272 117 81 5 chr12 23666300 23666693 -120615796 - MSTA LTR MaLR 0 428 6 1848 249 48 22 chr12 23666699 23667605 -120614884 + L1M3a LINE L1 905 1796 -4588 2369 85 0 0 chr12 23667817 23668147 -120614342 - L1PB1 LINE L1 -38 6113 5784 480 103 48 24 chr12 23668241 23668406 -120614083 + (TA)n Simple_repeat Simple_repeat 1 169 0 547 104 67 0 chr12 23668426 23668590 -120613899 + (TA)n Simple_repeat Simple_repeat 2 176 0 501 113 71 0 chr12 23668610 23668778 -120613711 + (TA)n Simple_repeat Simple_repeat 1 180 0 333 261 11 11 chr12 23668815 23668907 -120613582 + L1MC4 LINE L1 6612 6703 -1339 192 77 0 0 chr12 23668907 23668933 -120613556 + (TA)n Simple_repeat Simple_repeat 2 27 0 3383 134 16 3 chr12 23668933 23669651 -120612838 - L1P5 LINE L1 -359 5792 5068 2831 188 5 6 chr12 23669669 23670314 -120612175 + L1P5 LINE L1 4406 5049 -1097 242 317 297 0 chr12 23670807 23670908 -120611581 + L2 LINE L2 3138 3268 -4 269 302 88 50 chr12 23671691 23671850 -120610639 - L2 LINE L2 0 3313 3149 2114 158 42 49 chr12 23672437 23672485 -120610004 - MSTB LTR MaLR 0 426 379 1058 405 93 9 chr12 23672485 23672828 -120609661 + THE1C LTR MaLR 1 372 -3 2114 158 42 49 chr12 23672828 23673208 -120609281 - MSTB LTR MaLR -47 379 1 311 293 121 9 chr12 23673233 23673349 -120609140 - L2 LINE L2 -244 3069 2941 1942 270 75 65 chr12 23673923 23674532 -120607957 + L2 LINE L2 63 665 -2649 1970 161 0 3 chr12 23674532 23674842 -120607647 - AluJo SINE Alu 0 312 4 1942 270 75 65 chr12 23674842 23675106 -120607383 + L2 LINE L2 665 948 -2366 2113 113 0 0 chr12 23675106 23675381 -120607108 - AluSg SINE Alu -35 275 1 1942 270 75 65 chr12 23675381 23675457 -120607032 + L2 LINE L2 948 1022 -2292 378 186 12 35 chr12 23675914 23676000 -120606489 - L2 LINE L2 -203 3069 2986 303 49 0 0 chr12 23676776 23676817 -120605672 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 22 35 0 0 chr12 23677176 23677205 -120605284 + AT_rich Low_complexity Low_complexity 1 29 0 538 206 237 0 chr12 23678050 23678181 -120604308 - MIR SINE MIR -56 206 45 2480 147 60 11 chr12 23678329 23678798 -120603691 + ERVL-B1 LTR ERVL 5268 5759 -5 1491 129 0 0 chr12 23678801 23679025 -120603464 + MLT2B1 LTR ERVL 6 229 -291 441 0 0 0 chr12 23679030 23679079 -120603410 + (TG)n Simple_repeat Simple_repeat 1 49 0 195 42 0 0 chr12 23679078 23679102 -120603387 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 374 109 0 0 chr12 23679104 23679159 -120603330 + MLT2B1 LTR ERVL 410 464 0 337 272 11 0 chr12 23679181 23679273 -120603216 - Charlie8 DNA MER1_type -2244 173 81 1261 225 62 15 chr12 23679587 23679912 -120602577 - MER2 DNA MER2_type -4 340 1 234 293 13 0 chr12 23680023 23680098 -120602391 - MIR SINE MIR 0 262 187 21 0 0 0 chr12 23681662 23681683 -120600806 + AT_rich Low_complexity Low_complexity 1 21 0 188 354 0 15 chr12 23682158 23682223 -120600266 + L3 LINE CR1 1514 1577 0 805 244 44 36 chr12 23684099 23684349 -120598140 + MIR SINE MIR 11 262 0 542 284 115 0 chr12 23684495 23684703 -120597786 - MIR SINE MIR -2 260 29 319 259 83 19 chr12 23685413 23685521 -120596968 - L1M4 LINE L1 -2871 3275 3161 568 276 82 24 chr12 23685574 23686026 -120596463 - L1M4 LINE L1 -2985 3161 2684 2143 85 3 3 chr12 23686083 23686390 -120596099 + AluSg SINE Alu 1 307 0 2354 102 3 0 chr12 23686599 23686904 -120595585 - AluSx SINE Alu -6 306 1 297 239 15 0 chr12 23687771 23687838 -120594651 - MER83 LTR ERV1 0 448 381 247 107 89 0 chr12 23687854 23687910 -120594579 + MER83C LTR ERV1 270 330 -43 2498 107 18 0 chr12 23687935 23688318 -120594171 - MER83 LTR ERV1 -58 390 1 1078 173 0 0 chr12 23688640 23688819 -120593670 - AluSg/x SINE Alu -2 308 130 279 0 0 0 chr12 23688820 23688851 -120593638 + (TA)n Simple_repeat Simple_repeat 1 31 0 460 338 55 14 chr12 23689079 23689296 -120593193 - MIR SINE MIR -20 242 17 537 221 165 25 chr12 23689296 23689454 -120593035 - MER5A DNA MER1_type 0 189 10 2294 142 17 0 chr12 23689874 23690233 -120592256 + MLT1A1 LTR MaLR 1 365 0 189 74 0 0 chr12 23691090 23691117 -120591372 + (TTTAA)n Simple_repeat Simple_repeat 2 28 0 562 51 0 0 chr12 23691178 23691256 -120591233 + L1MA9 LINE L1 6235 6312 0 1169 274 86 25 chr12 23691435 23691983 -120590506 - L1MC4a LINE L1 -1894 5914 5334 22 35 0 0 chr12 23692105 23692134 -120590355 + AT_rich Low_complexity Low_complexity 1 29 0 415 326 89 0 chr12 23692486 23692676 -120589813 + MIR SINE MIR 34 240 -22 621 204 186 0 chr12 23692703 23692871 -120589618 + MIR SINE MIR 61 259 -3 180 258 129 0 chr12 23693538 23693600 -120588889 + MIR SINE MIR 75 144 -118 287 196 0 0 chr12 23693632 23693688 -120588801 - MLT2B3 LTR ERVL 0 554 499 325 111 0 0 chr12 23693688 23693742 -120588747 - L1ME LINE L1 -360 5810 5757 835 158 49 6 chr12 23693760 23693924 -120588565 - Tigger7 DNA MER2_type -19 2468 2298 415 183 12 0 chr12 23693920 23694002 -120588487 - Tigger7 DNA MER2_type -2169 318 236 * 442 298 60 37 chr12 23694195 23694413 -120588076 - MLT1K LTR MaLR -165 423 201 1873 173 0 13 chr12 23694560 23694867 -120587622 + AluJb SINE Alu 1 303 -9 2158 139 0 0 chr12 23694869 23695220 -120587269 + AluSx SINE Alu 10 360 0 2207 74 0 11 chr12 23695350 23695700 -120586789 + AluY SINE Alu 1 347 0 432 341 0 0 chr12 23697181 23697307 -120585182 + MIR SINE MIR 21 146 -62 521 187 32 144 chr12 23697532 23697816 -120584673 - MER112 DNA MER1_type -1 255 4 218 292 36 27 chr12 23698017 23698152 -120584337 + MIR SINE MIR 19 154 -68 * 314 333 20 10 chr12 23698145 23698247 -120584242 - L2 LINE L2 0 3272 3170 1375 281 60 88 chr12 23698471 23699325 -120583164 + L2 LINE L2 955 1784 -1530 411 273 76 52 chr12 23699454 23699547 -120582942 - L1MEc LINE L1 -3384 2831 2742 2248 138 13 16 chr12 23699547 23699923 -120582566 + THE1C LTR MaLR 1 375 0 411 273 76 52 chr12 23699923 23699993 -120582496 - L1MEc LINE L1 -3473 2742 2675 2127 109 7 26 chr12 23699993 23700297 -120582192 - AluSp SINE Alu -15 298 1 411 273 76 52 chr12 23700297 23700631 -120581858 - L1MEc LINE L1 -3540 2675 2321 293 208 66 28 chr12 23700667 23700773 -120581716 - L1ME3 LINE L1 -20 6142 6033 730 294 71 14 chr12 23700821 23701243 -120581246 - L1MEc LINE L1 -4516 1880 1435 240 35 0 0 chr12 23701540 23701569 -120580920 + (CA)n Simple_repeat Simple_repeat 2 30 0 249 264 0 0 chr12 23702484 23702537 -120579952 + CT-rich Low_complexity Low_complexity 2 54 0 212 360 112 12 chr12 23705240 23705401 -120577088 + L2 LINE L2 3092 3268 -4 6128 177 74 19 chr12 23706652 23707960 -120574529 + MER52A LTR ERV1 3 1498 -257 475 171 0 0 chr12 23707957 23708039 -120574450 + MER52A LTR ERV1 1674 1755 0 * 203 373 51 0 chr12 23708042 23708160 -120574329 + L2 LINE L2 2410 2533 -781 3444 177 54 30 chr12 23708214 23709015 -120573474 + L1MB4 LINE L1 5353 6172 -8 414 278 4 23 chr12 23709035 23709285 -120573204 + L1MC4a LINE L1 5443 5768 -2040 2359 234 12 30 chr12 23709291 23709565 -120572924 - MER119 DNA MER1_type -4 579 319 1816 5 0 0 chr12 23709565 23709760 -120572729 - AluYa5 SINE Alu -8 303 109 2359 234 12 30 chr12 23709760 23710045 -120572444 - MER119 DNA MER1_type -264 319 30 266 294 106 24 chr12 23710055 23710225 -120572264 + L1MC4a LINE L1 5778 5961 -1847 22 35 0 0 chr12 23710379 23710408 -120572081 + AT_rich Low_complexity Low_complexity 1 29 0 384 358 59 38 chr12 23710491 23710832 -120571657 + L1MC4a LINE L1 6284 6631 -1177 1514 338 43 41 chr12 23710905 23711970 -120570519 - HERV16 LTR ERVL -3736 1260 194 1328 256 111 23 chr12 23712116 23712503 -120569986 - LTR16C LTR ERVL 0 491 71 324 316 0 11 chr12 23712940 23713035 -120569454 - L2 LINE L2 0 3272 3179 23 0 0 0 chr12 23713737 23713760 -120568729 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr12 23713811 23713844 -120568645 + AT_rich Low_complexity Low_complexity 1 33 0 1383 81 0 0 chr12 23714899 23715084 -120567405 - AluYa5 SINE Alu 0 311 127 417 348 88 48 chr12 23715332 23715686 -120566803 + L2 LINE L2 2886 3253 -19 2322 179 58 52 chr12 23715839 23716343 -120566146 + MLT2B2 LTR ERVL 1 507 -8 253 229 49 0 chr12 23718618 23718679 -120563810 - L2 LINE L2 0 3272 3209 847 269 84 45 chr12 23719229 23719586 -120562903 - MLT1H LTR MaLR -178 371 1 2202 110 36 36 chr12 23719693 23720057 -120562432 + THE1B LTR MaLR 1 364 0 211 343 10 20 chr12 23721382 23721484 -120561005 - L2 LINE L2 -306 2966 2866 341 306 150 38 chr12 23721732 23722131 -120560358 - L2 LINE L2 -802 2512 2069 1987 151 0 3 chr12 23722536 23722835 -120559654 + AluJb SINE Alu 1 298 -14 1518 236 61 16 chr12 23723291 23723732 -120558757 - MLT1C LTR MaLR 0 467 7 225 0 0 0 chr12 23725259 23725284 -120557205 + (T)n Simple_repeat Simple_repeat 1 25 0 2268 102 0 7 chr12 23725318 23725621 -120556868 + AluSx SINE Alu 1 301 -11 21 36 0 0 chr12 23725930 23725958 -120556531 + AT_rich Low_complexity Low_complexity 1 28 0 201 74 0 0 chr12 23725997 23726024 -120556465 + (T)n Simple_repeat Simple_repeat 1 27 0 239 333 23 0 chr12 23726406 23726493 -120555996 - MIR SINE MIR -114 148 60 225 239 159 74 chr12 23726618 23726781 -120555708 + L3b LINE CR1 1123 1299 -284 708 193 48 37 chr12 23727728 23727915 -120554574 + MER53 DNA DNA 1 189 0 180 310 16 8 chr12 23728162 23728291 -120554198 + T-rich Low_complexity Low_complexity 4 133 0 552 193 14 7 chr12 23728296 23728436 -120554053 + CT-rich Low_complexity Low_complexity 2 142 0 1033 80 29 11 chr12 23728438 23728613 -120553876 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 228 211 0 44 chr12 23728616 23728706 -120553783 + CT-rich Low_complexity Low_complexity 4 89 0 1315 196 84 43 chr12 23729368 23729714 -120552775 - MLT1A1 LTR MaLR -5 360 1 952 188 30 25 chr12 23730206 23730427 -120552062 - AluJo SINE Alu 0 305 84 2803 126 6 78 chr12 23730630 23731180 -120551309 + L1MA4A LINE L1 5794 6303 0 188 353 88 0 chr12 23731237 23731339 -120551150 - L2 LINE L2 -246 3026 2916 231 303 13 33 chr12 23731589 23731741 -120550748 + CT-rich Low_complexity Low_complexity 1 149 0 1558 160 3 35 chr12 23732355 23732637 -120549852 - AluSg1 SINE Alu -1 308 36 1717 146 62 46 chr12 23732717 23733086 -120549403 - THE1C LTR MaLR 0 375 1 243 0 0 0 chr12 23735836 23735863 -120546626 + (A)n Simple_repeat Simple_repeat 1 27 0 207 327 188 0 chr12 23735866 23735967 -120546522 - MIR3 SINE MIR -25 183 64 604 296 128 32 chr12 23738071 23738476 -120544013 + L2 LINE L2 2851 3294 -19 23 54 0 0 chr12 23738686 23738723 -120543766 + AT_rich Low_complexity Low_complexity 1 37 0 190 346 125 0 chr12 23738863 23738967 -120543522 - L2 LINE L2 -35 3237 3121 442 259 80 19 chr12 23739010 23739172 -120543317 - MIR SINE MIR -42 220 49 611 239 99 123 chr12 23739519 23740075 -120542414 + MLT1H1 LTR MaLR 18 555 0 746 233 105 9 chr12 23740077 23740296 -120542193 + MIR SINE MIR 23 262 0 328 314 34 8 chr12 23740510 23740628 -120541861 + MIR SINE MIR 122 242 -20 222 37 0 0 chr12 23741073 23741100 -120541389 + (CA)n Simple_repeat Simple_repeat 1 27 0 213 303 0 30 chr12 23741814 23741880 -120540609 - MIR3 SINE MIR -6 202 139 317 328 136 11 chr12 23741915 23742092 -120540397 + MIR SINE MIR 63 261 -1 24 0 0 0 chr12 23742171 23742195 -120540294 + AT_rich Low_complexity Low_complexity 1 24 0 380 290 77 73 chr12 23742203 23742462 -120540027 - HAL1 LINE L1 -3 2504 2245 184 111 44 0 chr12 23742819 23742864 -120539625 + (TA)n Simple_repeat Simple_repeat 2 48 0 1688 126 19 48 chr12 23742987 23743256 -120539233 - MER1B DNA MER1_type 0 339 79 1547 266 104 34 chr12 23743587 23744100 -120538389 - HAL1 LINE L1 -795 1712 1116 192 77 0 0 chr12 23744100 23744126 -120538363 + (TG)n Simple_repeat Simple_repeat 2 27 0 1547 266 104 34 chr12 23744126 23744455 -120538034 - HAL1 LINE L1 -1391 1116 811 183 42 0 0 chr12 23744790 23744814 -120537675 + (T)n Simple_repeat Simple_repeat 1 24 0 22 80 0 0 chr12 23746447 23746497 -120535992 + AT_rich Low_complexity Low_complexity 1 50 0 827 129 50 14 chr12 23748028 23748206 -120534283 + AluJb SINE Alu 168 350 0 26 0 0 0 chr12 23748941 23748967 -120533522 + AT_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr12 23749434 23749458 -120533031 + (AATTG)n Simple_repeat Simple_repeat 5 28 0 590 294 107 52 chr12 23749594 23750016 -120532473 - MLT1H LTR MaLR 0 549 105 1103 261 81 30 chr12 23751337 23751671 -120530818 + MLT1H LTR MaLR 1 351 -198 274 214 18 0 chr12 23751684 23751740 -120530749 + LTR28 LTR ERV1 1 57 -963 * 1278 211 201 59 chr12 23751734 23752431 -120530058 + LTR1B LTR ERV1 19 983 -37 380 283 17 8 chr12 23752471 23752591 -120529898 + LTR28 LTR ERV1 900 1020 0 275 297 55 0 chr12 23752643 23752734 -120529755 + MLT1H LTR MaLR 454 549 0 190 337 23 0 chr12 23753917 23754003 -120528486 - MIR SINE MIR -67 141 54 224 119 0 24 chr12 23754417 23754459 -120528030 + (TA)n Simple_repeat Simple_repeat 2 42 0 680 242 38 16 chr12 23754579 23754765 -120527724 + MER91B DNA MER1_type 1 190 0 2022 103 0 0 chr12 23754880 23755142 -120527347 + AluSc SINE Alu 40 301 -8 324 102 0 0 chr12 23755430 23755479 -120527010 + (TG)n Simple_repeat Simple_repeat 1 49 0 598 174 78 30 chr12 23756874 23757041 -120525448 - MER5B DNA MER1_type -2 176 2 362 172 0 0 chr12 23757346 23757404 -120525085 + L2 LINE L2 3256 3313 0 190 186 0 34 chr12 23757662 23757721 -120524768 + CT-rich Low_complexity Low_complexity 4 60 0 216 420 23 0 chr12 23758424 23758512 -120523977 + L2 LINE L2 3129 3218 -54 180 0 0 0 chr12 23762434 23762454 -120520035 + (T)n Simple_repeat Simple_repeat 1 20 0 225 293 64 42 chr12 23765219 23765424 -120517065 + MIR SINE MIR 46 225 -37 270 215 62 0 chr12 23765934 23765999 -120516490 - LTR58 LTR ERV1 -252 427 359 22 0 0 0 chr12 23766262 23766284 -120516205 + AT_rich Low_complexity Low_complexity 1 22 0 1850 118 4 0 chr12 23766284 23766530 -120515959 - AluSx SINE Alu -64 248 2 204 216 0 0 chr12 23766743 23766794 -120515695 + (CTA)n Simple_repeat Simple_repeat 1 51 0 484 244 360 0 chr12 23766825 23766997 -120515492 - MIR SINE MIR -10 252 19 2320 89 0 3 chr12 23767496 23767789 -120514700 - AluSq SINE Alu -17 296 5 640 155 8 39 chr12 23767963 23768092 -120514397 - L1MB7 LINE L1 -8 6176 6052 2644 180 107 58 chr12 23768111 23768871 -120513618 + LTR1B LTR ERV1 30 826 0 2628 195 4 17 chr12 23768871 23769388 -120513101 - L1MB7 LINE L1 -135 6049 5540 375 294 42 8 chr12 23769598 23769717 -120512772 + L2 LINE L2 3149 3271 -1 2184 168 37 0 chr12 23772575 23772927 -120509562 - MLT1A1 LTR MaLR 0 365 1 575 322 89 0 chr12 23773138 23773352 -120509137 + MIR SINE MIR 22 254 -8 1473 188 31 10 chr12 23774026 23774318 -120508171 + AluJo SINE Alu 1 298 -14 2694 195 20 61 chr12 23774895 23775550 -120506939 + L1ME1 LINE L1 5534 6161 -5 421 296 79 33 chr12 23775731 23775971 -120506518 - MIR SINE MIR 0 262 12 334 321 128 37 chr12 23777095 23777282 -120505207 - L2 LINE L2 -1 3271 3068 210 257 129 0 chr12 23777701 23777771 -120504718 - L2 LINE L2 -5 3308 3230 2049 59 0 0 chr12 23779219 23779458 -120503031 + L1PA5 LINE L1 5905 6143 -11 191 30 0 61 chr12 23779462 23779495 -120502994 + (TAAAAA)n Simple_repeat Simple_repeat 6 36 0 2350 100 0 0 chr12 23779506 23779807 -120502682 + AluSx SINE Alu 1 301 -11 182 200 44 22 chr12 23780063 23780108 -120502381 + L2 LINE L2 3239 3284 -29 185 250 206 0 chr12 23781100 23781192 -120501297 + L2 LINE L2 1324 1434 -1880 420 180 281 37 chr12 23781326 23781470 -120501019 - MLT1D LTR MaLR 0 626 327 7027 83 20 4 chr12 23781470 23782767 -120499722 - L1PA13 LINE L1 -1 6162 4857 1679 150 0 37 chr12 23782768 23783068 -120499421 + L1PA13 LINE L1 4572 4860 -1286 1484 194 46 55 chr12 23783068 23783159 -120499330 - MLT1D LTR MaLR -163 342 252 447 35 0 0 chr12 23783159 23783216 -120499273 + (TC)n Simple_repeat Simple_repeat 2 58 0 1484 194 46 55 chr12 23783216 23783431 -120499058 - MLT1D LTR MaLR -253 252 37 1941 202 11 30 chr12 23783431 23783797 -120498692 - MLT1A1 LTR MaLR -2 363 5 1484 194 46 55 chr12 23783797 23783834 -120498655 - MLT1D LTR MaLR -468 37 1 2002 223 56 16 chr12 23784246 23784690 -120497799 - LTR40b LTR ERVL 0 462 1 242 217 0 0 chr12 23784811 23784871 -120497618 + T-rich Low_complexity Low_complexity 1 60 0 1405 216 51 25 chr12 23885269 23885625 -120396864 + MLT1A1 LTR MaLR 1 365 0 43 56 0 0 chr12 23886850 23886921 -120395568 + AT_rich Low_complexity Low_complexity 1 71 0 1109 280 38 8 chr12 23887162 23887665 -120394824 + L1MEc LINE L1 1303 1820 -4576 225 0 0 0 chr12 23887935 23887960 -120394529 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 733 206 0 0 chr12 23887997 23888123 -120394366 + FLAM_C SINE Alu 1 126 -17 300 53 0 0 chr12 23888140 23888178 -120394311 + (TA)n Simple_repeat Simple_repeat 1 38 0 717 112 0 0 chr12 23888295 23888393 -120394096 + AluSc SINE Alu 128 225 -84 1188 150 5 39 chr12 23888451 23888658 -120393831 + MLT1B LTR MaLR 191 390 0 1446 261 126 41 chr12 23888658 23889524 -120392965 + L2 LINE L2 2390 3313 0 503 263 19 19 chr12 23889802 23889958 -120392531 + L1MA9 LINE L1 6119 6274 -38 337 287 48 41 chr12 23890008 23890354 -120392135 - L1M4 LINE L1 -913 5233 4885 12074 209 39 28 chr12 23890488 23894288 -120388201 - L1MA9 LINE L1 -371 6177 2331 2355 296 80 41 chr12 23894289 23896227 -120386262 + L1MC4 LINE L1 5439 7541 -347 525 264 49 25 chr12 23896569 23896732 -120385757 + MIR SINE MIR 96 262 0 21 36 0 0 chr12 23896865 23896893 -120385596 + AT_rich Low_complexity Low_complexity 1 28 0 1562 204 0 35 chr12 23896893 23897182 -120385307 - AluJo SINE Alu -27 285 7 287 322 63 38 chr12 23897211 23897450 -120385039 - MIR SINE MIR 0 262 18 27 29 0 0 chr12 23897554 23897588 -120384901 + AT_rich Low_complexity Low_complexity 1 34 0 181 297 66 33 chr12 23897758 23897849 -120384640 + MIR SINE MIR 33 126 -136 24 91 0 0 chr12 23900707 23900773 -120381716 + AT_rich Low_complexity Low_complexity 1 66 0 5623 76 1 0 chr12 23902978 23903715 -120378774 - L1PA6 LINE L1 -4 6150 5413 859 97 0 0 chr12 23903816 23903930 -120378559 - AluSg/x SINE Alu -5 307 194 635 120 11 0 chr12 23903930 23904022 -120378467 - AluSg SINE Alu -217 93 1 3290 86 4 25 chr12 23904022 23904500 -120377989 - L1PB2 LINE L1 -176 5975 5508 273 276 66 72 chr12 23904655 23904836 -120377653 - MIR3 SINE MIR -14 194 15 2445 181 71 50 chr12 23905264 23905428 -120377061 - MER92B LTR ERV1 0 636 477 2196 124 0 0 chr12 23905428 23905726 -120376763 - AluSx SINE Alu -14 298 1 2445 181 71 50 chr12 23905726 23906184 -120376305 - MER92B LTR ERV1 -159 477 1 272 143 0 0 chr12 23908251 23908293 -120374196 - MER4D LTR ERV1 -586 286 245 5486 122 19 5 chr12 23908298 23909129 -120373360 + MER4D LTR ERV1 30 872 0 3317 72 0 18 chr12 23909387 23909843 -120372646 - LTR7 LTR ERV1 -2 448 1 1404 61 9 42 chr12 23909843 23910057 -120372432 - HERVH LTR ERV1 0 7713 7507 554 125 12 0 chr12 23910162 23910242 -120372247 - Tigger2 DNA MER2_type -2637 81 1 438 273 61 18 chr12 23911399 23911564 -120370925 + LTR33A LTR ERVL 352 523 0 181 324 95 0 chr12 23911565 23911639 -120370850 + MIR SINE MIR 106 186 -76 745 274 25 5 chr12 23911660 23911857 -120370632 + MER58A DNA MER1_type 24 224 0 3170 157 41 5 chr12 23912518 23913098 -120369391 - LTR26 LTR ERV1 0 603 3 203 361 68 0 chr12 23913209 23913342 -120369147 + MIR SINE MIR 92 233 -29 2177 121 7 0 chr12 23913641 23913938 -120368551 + AluSx SINE Alu 1 299 -13 39 38 0 0 chr12 23914089 23914142 -120368347 + AT_rich Low_complexity Low_complexity 1 53 0 207 0 0 0 chr12 23914188 23914211 -120368278 + (CA)n Simple_repeat Simple_repeat 1 23 0 1957 132 0 4 chr12 23914948 23915252 -120367237 + AluSx SINE Alu 6 308 0 8423 36 3 0 chr12 23915441 23916517 -120365972 - L1P LINE L1 -3280 2866 1788 2693 40 0 0 chr12 23916517 23916842 -120365647 + L1PA3 LINE L1 5831 6155 0 1987 60 134 0 chr12 23916852 23917120 -120365369 + AluY SINE Alu 2 305 -6 1952 136 3 35 chr12 23918494 23918810 -120363679 - AluSg SINE Alu -4 306 1 36 23 0 0 chr12 23919966 23920009 -120362480 + AT_rich Low_complexity Low_complexity 1 43 0 263 339 23 0 chr12 23922051 23922181 -120360308 - L2 LINE L2 -707 2607 2475 243 0 0 0 chr12 23922305 23922332 -120360157 + (TA)n Simple_repeat Simple_repeat 2 28 0 277 227 23 11 chr12 23922824 23922912 -120359577 + (TA)n Simple_repeat Simple_repeat 2 90 0 1231 278 131 18 chr12 23922933 23923187 -120359302 + L2 LINE L2 1528 1752 -1562 2395 101 0 0 chr12 23923187 23923495 -120358994 - AluY SINE Alu -3 308 1 1231 278 131 18 chr12 23923495 23923804 -120358685 + L2 LINE L2 1752 2155 -1159 973 141 12 0 chr12 23923905 23924068 -120358421 - MSTA LTR MaLR -263 165 1 739 333 14 18 chr12 23924082 23924415 -120358074 + L2 LINE L2 2703 3033 -280 1316 219 128 35 chr12 23924460 23924922 -120357567 + MLT1D LTR MaLR 1 505 0 331 271 118 24 chr12 23924933 23925103 -120357386 + L2 LINE L2 3094 3279 -34 231 204 19 19 chr12 23925119 23925173 -120357316 + GA-rich Low_complexity Low_complexity 4 57 0 198 354 70 25 chr12 23925223 23925381 -120357108 + L3 LINE CR1 1067 1231 -346 1996 102 39 21 chr12 23925449 23925782 -120356707 + L1MA7 LINE L1 5949 6287 -4 3693 145 7 0 chr12 23925827 23926426 -120356063 + L1PB4 LINE L1 5547 6149 -7 206 369 0 15 chr12 23926522 23926587 -120355902 + L3 LINE CR1 1464 1527 -50 695 313 86 33 chr12 23927270 23928174 -120354315 + L1ME3 LINE L1 3416 4367 -1779 623 246 74 51 chr12 23928247 23928746 -120353743 + MLT1G1 LTR MaLR 10 537 -5 323 270 92 33 chr12 23928843 23929180 -120353309 + L1ME3 LINE L1 4699 5055 -1091 328 315 24 16 chr12 23929215 23929342 -120353147 + L1ME3 LINE L1 5265 5378 -786 289 87 0 0 chr12 23929345 23929391 -120353098 + L1ME1 LINE L1 6120 6165 -1 663 270 93 9 chr12 23929395 23929824 -120352665 + L1ME3 LINE L1 5374 5838 -324 3377 104 2 0 chr12 23929907 23930399 -120352090 + L1PA13 LINE L1 5671 6163 0 37535 74 12 8 chr12 23930422 23932223 -120350266 + L1P LINE L1 11 1804 -4342 2889 3 0 0 chr12 23932223 23932533 -120349956 - AluYa5 SINE Alu -1 310 1 37535 74 12 8 chr12 23932533 23936073 -120346416 + L1P LINE L1 1804 5371 -775 925 275 72 45 chr12 23936175 23936553 -120345936 + L1M4 LINE L1 2320 2686 -3460 1867 139 11 7 chr12 23936553 23936859 -120345630 + AluSq SINE Alu 1 307 0 925 275 72 45 chr12 23936859 23936928 -120345561 + L1M4 LINE L1 2686 2752 -3394 1541 48 0 0 chr12 23936928 23937114 -120345375 + L1PA3 LINE L1 5970 6155 0 925 275 72 45 chr12 23937114 23937533 -120344956 + L1M4 LINE L1 2752 3212 -2934 755 82 0 0 chr12 23937533 23937631 -120344858 + L1PA4 LINE L1 1 98 -6048 * 37335 39 0 0 chr12 23937629 23943158 -120339331 + L1PA4 LINE L1 623 6152 -3 541 332 139 17 chr12 23943997 23944343 -120338146 + L3 LINE CR1 1146 1533 -44 521 122 33 0 chr12 23944648 23944738 -120337751 - MLT1B LTR MaLR -64 326 234 182 146 0 24 chr12 23944749 23944790 -120337699 + (TTTTC)n Simple_repeat Simple_repeat 1 40 0 2111 123 0 10 chr12 23945445 23945738 -120336751 - AluSx SINE Alu -22 290 1 996 136 34 0 chr12 23946267 23946443 -120336046 - L1M1 LINE L1 -7378 187 6 858 212 10 5 chr12 23946560 23946763 -120335726 - L1MB8 LINE L1 -5 6173 5970 367 173 0 25 chr12 23947151 23947232 -120335257 - HsTC2 DNA Tc2 -1819 79 1 3211 71 16 18 chr12 23947239 23947688 -120334801 + LTR7 LTR ERV1 1 448 -2 14376 95 11 24 chr12 23947690 23950475 -120332014 + HERVH LTR ERV1 1 2995 -4718 5244 116 17 0 chr12 23950454 23951294 -120331195 + HERVH LTR ERV1 3140 3993 -3720 * 2871 130 5 2 chr12 23951296 23951908 -120330581 + HERVH LTR ERV1 4488 5149 -2564 1232 133 0 60 chr12 23951909 23952143 -120330346 + HERVH LTR ERV1 5600 5819 -1894 630 86 0 0 chr12 23952143 23952236 -120330253 + HERVH LTR ERV1 7324 7416 -297 3743 127 14 13 chr12 23952341 23952971 -120329518 + Tigger2 DNA MER2_type 112 742 -1976 1520 159 4 0 chr12 23953038 23953295 -120329194 + Tigger2 DNA MER2_type 2461 2718 0 595 261 108 30 chr12 23953823 23954018 -120328471 + MIR SINE MIR 6 216 -46 508 270 151 13 chr12 23954018 23954177 -120328312 - MER5A DNA MER1_type 0 189 9 197 260 20 0 chr12 23954179 23954229 -120328260 + MIR SINE MIR 202 252 -10 370 348 14 14 chr12 23955137 23955275 -120327214 + MIR SINE MIR 19 156 -106 273 163 0 0 chr12 23957077 23957126 -120325363 - MLT1H LTR MaLR -461 88 40 208 135 19 19 chr12 23957539 23957591 -120324898 + (TA)n Simple_repeat Simple_repeat 1 52 0 471 18 0 0 chr12 23958166 23958222 -120324267 + (TG)n Simple_repeat Simple_repeat 2 57 0 629 337 68 49 chr12 23958268 23958443 -120324046 + ERVL LTR ERVL 1087 1257 -4507 777 298 9 0 chr12 23958443 23958661 -120323828 + MER58A DNA MER1_type 5 224 0 629 337 68 49 chr12 23958661 23959100 -120323389 + ERVL LTR ERVL 1257 1713 -4051 884 286 29 25 chr12 23959149 23959464 -120323025 + ERVL LTR ERVL 1823 2138 -3626 307 307 52 22 chr12 23959490 23959818 -120322671 + ERVL LTR ERVL 3274 3686 -2078 970 243 115 10 chr12 23960115 23960420 -120322069 - L2 LINE L2 -470 2844 2508 22 56 0 0 chr12 23960729 23960765 -120321724 + AT_rich Low_complexity Low_complexity 1 36 0 1638 184 40 58 chr12 23960791 23961188 -120321301 + MLT1B LTR MaLR 1 390 0 279 320 194 8 chr12 23961497 23961744 -120320745 + L2 LINE L2 3005 3297 -16 1041 291 50 47 chr12 23962192 23962677 -120319812 + LTR33 LTR ERVL 31 516 -5 182 361 98 33 chr12 23962751 23962873 -120319616 - L2 LINE L2 -5 3267 3138 1649 183 70 23 chr12 23963572 23963916 -120318573 + MLT1A1 LTR MaLR 6 365 0 2146 138 43 0 chr12 23964265 23964614 -120317875 - THE1B LTR MaLR 0 364 1 184 299 0 103 chr12 23965241 23965338 -120317151 + L2 LINE L2 3227 3313 0 26 0 0 0 chr12 23965396 23965422 -120317067 + AT_rich Low_complexity Low_complexity 1 26 0 13727 105 19 2 chr12 23965460 23968317 -120314172 + L1PA8 LINE L1 3281 6171 -1 184 250 0 50 chr12 23968722 23968802 -120313687 + L2 LINE L2 3015 3090 -182 248 279 117 46 chr12 23969850 23970047 -120312442 + MIR SINE MIR 48 258 -4 369 296 78 9 chr12 23970886 23971001 -120311488 - L2 LINE L2 0 3272 3150 180 0 0 0 chr12 23971629 23971649 -120310840 + (A)n Simple_repeat Simple_repeat 1 20 0 2478 215 46 9 chr12 23971649 23972732 -120309757 + L1M4 LINE L1 4633 5760 -424 429 240 0 0 chr12 23972738 23972838 -120309651 - L1MB5 LINE L1 -289 5885 5786 2241 327 78 41 chr12 23972843 23974190 -120308299 - L2 LINE L2 -1241 2073 677 453 317 58 36 chr12 23974218 23974442 -120308047 - L2 LINE L2 -2886 428 200 3558 31 0 0 chr12 23976054 23976478 -120306011 - L1PA4 LINE L1 -1545 4601 4178 7476 28 6 0 chr12 23976478 23978048 -120304441 + L1PA4 LINE L1 4581 6151 -4 468 245 16 54 chr12 23978295 23978479 -120304010 - MER104 DNA MER2_type -1 179 3 272 416 72 0 chr12 23978506 23978631 -120303858 + L2 LINE L2 3139 3272 0 1515 239 65 2 chr12 23978970 23979417 -120303072 - Charlie1b DNA MER1_type -48 475 1 202 217 87 0 chr12 23979606 23979652 -120302837 + MIR SINE MIR 157 206 -56 826 276 119 33 chr12 23979791 23980212 -120302277 + L2 LINE L2 1920 2376 -938 268 290 81 97 chr12 23980201 23980636 -120301853 + L2 LINE L2 2818 3245 -68 * 218 331 74 16 chr12 23980639 23980760 -120301729 + L3b LINE CR1 1378 1505 -78 2452 53 3 0 chr12 23981867 23982168 -120300321 + AluY SINE Alu 1 302 -9 571 353 55 46 chr12 23982975 23983451 -120299038 - LTR67 LTR ERVL -16 541 62 337 221 11 63 chr12 23983500 23983595 -120298894 - Tigger5 DNA MER2_type 0 2323 2234 2109 109 3 3 chr12 23983730 23984046 -120298443 + AluSx SINE Alu 3 318 0 2002 102 41 10 chr12 23985295 23985588 -120296901 - AluSg SINE Alu -6 304 3 194 233 12 128 chr12 23985847 23985933 -120296556 + MIR SINE MIR 82 157 -105 439 277 25 0 chr12 23986606 23986725 -120295764 + MIR SINE MIR 99 220 -42 322 318 45 9 chr12 23986836 23986876 -120295613 + MER81 DNA DNA 1 38 -76 348 24 0 0 chr12 23986876 23986917 -120295572 + (TTA)n Simple_repeat Simple_repeat 2 42 0 322 318 45 9 chr12 23986917 23986986 -120295503 + MER81 DNA DNA 38 114 0 294 441 14 0 chr12 23987354 23987499 -120294990 + L2 LINE L2 3121 3267 -5 190 318 47 73 chr12 23987573 23987661 -120294828 - L2 LINE L2 -967 2347 2258 279 0 0 0 chr12 23987661 23987692 -120294797 + (TG)n Simple_repeat Simple_repeat 2 32 0 190 318 47 73 chr12 23987692 23987795 -120294694 - L2 LINE L2 -1056 2258 2161 3288 143 19 17 chr12 23987819 23988393 -120294096 - L1MC3 LINE L1 0 7785 7211 303 276 81 8 chr12 23988949 23989072 -120293417 - MLT1I LTR MaLR -17 392 261 432 258 0 0 chr12 23989078 23989175 -120293314 + MER99 DNA DNA 6 102 -726 675 227 0 0 chr12 23989319 23989473 -120293016 + L1MB7 LINE L1 6019 6172 -12 375 177 28 50 chr12 23989567 23989748 -120292741 + (TA)n Simple_repeat Simple_repeat 1 177 0 288 231 33 0 chr12 23989797 23989888 -120292601 + (TA)n Simple_repeat Simple_repeat 1 94 0 1138 180 72 14 chr12 23990372 23990594 -120291895 + MER46A DNA MER2_type 2 236 0 338 332 108 43 chr12 23990789 23991159 -120291330 - L1MEc LINE L1 -4387 2009 1616 226 248 151 44 chr12 23991174 23991380 -120291109 - L1M2 LINE L1 -4393 2456 2229 238 128 0 21 chr12 23991508 23991555 -120290934 - L1MB7 LINE L1 -15 6169 6124 * 1624 162 14 3 chr12 23991546 23991830 -120290659 + L1MB3 LINE L1 5856 6142 -41 * 25544 137 11 16 chr12 23991829 23993066 -120289423 + L1PA8A LINE L1 2 1243 -5203 252 59 0 0 chr12 23993066 23993100 -120289389 + (CAA)n Simple_repeat Simple_repeat 3 36 0 25544 137 11 16 chr12 23993100 23998243 -120284246 + L1PA8A LINE L1 1243 6419 -27 2020 118 17 0 chr12 23998367 23998656 -120283833 - AluSx SINE Alu -18 294 1 294 221 26 13 chr12 23999278 23999355 -120283134 - MER103 DNA DNA -72 94 17 22 80 0 0 chr12 23999516 23999566 -120282923 + AT_rich Low_complexity Low_complexity 1 50 0 8753 171 13 27 chr12 23999667 24001893 -120280596 + L1PA15-16 LINE L1 1 2086 -4763 1914 145 26 19 chr12 24001893 24002203 -120280286 + AluSx SINE Alu 1 312 0 8753 171 13 27 chr12 24002203 24002405 -120280084 + L1PA15-16 LINE L1 2086 2289 -4560 4014 240 60 52 chr12 24002612 24004761 -120277728 + L1PA16 LINE L1 1046 3199 -3598 * 10299 162 38 8 chr12 24004758 24007872 -120274617 + L1MA2 LINE L1 3110 6304 0 11034 201 23 11 chr12 24007875 24011284 -120271205 + L1PA16 LINE L1 3180 6627 -190 613 118 9 9 chr12 24011286 24011396 -120271093 + L1PA16 LINE L1 6708 6817 0 369 348 50 0 chr12 24011505 24011666 -120270823 - MIR SINE MIR -26 236 68 531 220 21 71 chr12 24013081 24013222 -120269267 + MLT1B LTR MaLR 1 134 -240 201 162 0 0 chr12 24013382 24013419 -120269070 + A-rich Low_complexity Low_complexity 1 37 0 873 177 33 65 chr12 24013420 24013478 -120269011 + MLT1B LTR MaLR 167 225 -165 2242 131 120 5 chr12 24013478 24013861 -120268628 - MSTA LTR MaLR -1 427 1 873 177 33 65 chr12 24013861 24014017 -120268472 + MLT1B LTR MaLR 225 390 0 564 289 14 48 chr12 24014018 24014329 -120268160 - L1MC4a LINE L1 -302 5819 5609 546 235 127 58 chr12 24014354 24014614 -120267875 - MLT1J1 LTR MaLR -166 280 3 258 136 0 0 chr12 24014618 24014662 -120267827 + (TG)n Simple_repeat Simple_repeat 2 45 0 381 282 80 31 chr12 24014736 24015045 -120267444 - L1MC4a LINE L1 -748 5398 5159 1496 172 73 3 chr12 24015618 24015921 -120266568 - MER7A DNA MER2_type 0 346 25 1658 232 50 71 chr12 24017269 24017324 -120265165 - MLT1E LTR MaLR -11 582 527 1998 141 0 0 chr12 24017324 24017630 -120264859 + AluSx SINE Alu 1 306 0 1658 232 50 71 chr12 24017630 24017905 -120264584 - MLT1E LTR MaLR -66 527 266 3761 122 2 2 chr12 24017905 24018431 -120264058 + MER1A DNA MER1_type 2 527 0 1658 232 50 71 chr12 24018431 24018692 -120263797 - MLT1E LTR MaLR -327 266 1 2817 96 0 0 chr12 24018820 24019184 -120263305 + THE1B LTR MaLR 1 364 0 1669 174 6 39 chr12 24019348 24019659 -120262830 - AluJb SINE Alu -11 301 1 22 0 0 0 chr12 24019948 24019970 -120262519 + AT_rich Low_complexity Low_complexity 1 22 0 2573 62 0 0 chr12 24020289 24020593 -120261896 - AluY SINE Alu -7 304 1 821 279 40 4 chr12 24020628 24020875 -120261614 - MIR SINE MIR -1 261 6 2261 132 0 0 chr12 24020956 24021266 -120261223 - AluSx SINE Alu 0 312 3 2754 144 35 19 chr12 24021527 24022007 -120260482 + LTR45B LTR ERV1 2 489 0 23 54 0 0 chr12 24022895 24022932 -120259557 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr12 24023171 24023194 -120259295 + AT_rich Low_complexity Low_complexity 1 23 0 221 350 219 0 chr12 24023409 24023532 -120258957 - MIR3 SINE MIR -43 165 16 231 206 68 0 chr12 24023871 24023944 -120258545 + L1ME LINE L1 5675 5752 -369 21 0 0 0 chr12 24023974 24023995 -120258494 + AT_rich Low_complexity Low_complexity 1 21 0 2148 113 31 0 chr12 24024154 24024447 -120258042 - AluSg1 SINE Alu -7 302 1 21 57 0 0 chr12 24024831 24024866 -120257623 + AT_rich Low_complexity Low_complexity 1 35 0 2266 254 3 54 chr12 24026012 24026713 -120255776 + LTR8 LTR ERV1 27 691 0 1134 184 63 5 chr12 24026738 24026944 -120255545 - AluJb SINE Alu -21 291 74 246 325 50 12 chr12 24027109 24027189 -120255300 - L2 LINE L2 -39 3233 3151 1845 146 0 20 chr12 24027189 24027484 -120255005 + AluJb SINE Alu 1 289 -23 257 301 43 43 chr12 24027735 24027828 -120254661 - MIR SINE MIR -150 112 20 911 168 22 6 chr12 24027847 24028026 -120254463 - L1PB2 LINE L1 -4 6147 5966 693 174 0 0 chr12 24028043 24028158 -120254331 - AluSg/x SINE Alu 0 312 198 550 167 10 0 chr12 24028158 24028254 -120254235 - AluSg1 SINE Alu -212 97 1 474 194 8 32 chr12 24028263 24028387 -120254102 - L1PB2 LINE L1 -185 5966 5846 202 280 0 0 chr12 24079179 24079229 -120203260 + L2 LINE L2 3198 3247 -66 513 0 0 0 chr12 24079705 24079762 -120202727 + (GA)n Simple_repeat Simple_repeat 1 57 0 227 256 222 25 chr12 24081212 24081415 -120201074 + HAL1 LINE L1 2170 2412 -95 22 35 0 0 chr12 24082182 24082211 -120200278 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 24082399 24082420 -120200069 + AT_rich Low_complexity Low_complexity 1 21 0 184 255 59 0 chr12 24082495 24082546 -120199943 - L2 LINE L2 -4 3268 3215 212 333 160 0 chr12 24083306 24083381 -120199108 + L2 LINE L2 3201 3287 -26 404 268 128 0 chr12 24084129 24084293 -120198196 - Tigger3(Golem) DNA MER2_type 0 3037 2853 22 35 0 0 chr12 24084838 24084867 -120197622 + AT_rich Low_complexity Low_complexity 1 29 0 2119 113 0 0 chr12 24085629 24085937 -120196552 + AluSx SINE Alu 1 308 0 250 240 0 0 chr12 24086664 24086714 -120195775 + GA-rich Low_complexity Low_complexity 1 50 0 273 57 0 0 chr12 24088355 24088390 -120194099 + (TC)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr12 24088722 24088743 -120193746 + AT_rich Low_complexity Low_complexity 1 21 0 369 75 0 0 chr12 24088743 24088796 -120193693 + (CA)n Simple_repeat Simple_repeat 2 54 0 216 97 0 0 chr12 24089433 24089464 -120193025 + (CA)n Simple_repeat Simple_repeat 2 32 0 244 333 44 0 chr12 24089465 24089555 -120192934 + MIR SINE MIR 117 210 -52 515 298 79 17 chr12 24089834 24090012 -120192477 - L2 LINE L2 -243 3070 2882 819 287 121 17 chr12 24090021 24090376 -120192113 - L2 LINE L2 -610 2704 2313 293 54 0 0 chr12 24090378 24090415 -120192074 - THE1B LTR MaLR 0 364 328 554 269 134 6 chr12 24091179 24091350 -120191139 - MIR SINE MIR -62 200 8 26 0 0 0 chr12 24091397 24091423 -120191066 + AT_rich Low_complexity Low_complexity 1 26 0 423 302 81 0 chr12 24091922 24092071 -120190418 - L2 LINE L2 -4 3309 3149 975 277 50 70 chr12 24092085 24092554 -120189935 + L1MEd LINE L1 564 1014 -5191 2082 142 0 0 chr12 24092554 24092864 -120189625 + AluJo SINE Alu 1 310 -2 975 277 50 70 chr12 24092864 24093151 -120189338 + L1MEd LINE L1 1014 1305 -4900 505 244 113 50 chr12 24093805 24094165 -120188324 + L1MEd LINE L1 2117 2460 -3755 24 67 0 0 chr12 24094297 24094342 -120188147 + AT_rich Low_complexity Low_complexity 1 45 0 716 309 29 3 chr12 24094374 24094720 -120187769 + L1MEd LINE L1 2479 2833 -3382 243 294 49 92 chr12 24095686 24095870 -120186619 + L2 LINE L2 3089 3264 -8 26 0 0 0 chr12 24095953 24095979 -120186510 + AT_rich Low_complexity Low_complexity 1 26 0 739 346 114 18 chr12 24096116 24096618 -120185871 + L2 LINE L2 2762 3313 0 2410 65 13 3 chr12 24096783 24097089 -120185400 + AluY SINE Alu 1 309 -2 676 194 8 0 chr12 24097239 24097373 -120185116 + L1PB4 LINE L1 6022 6156 0 2515 61 0 3 chr12 24099830 24100141 -120182348 - AluY SINE Alu -1 310 1 291 54 0 0 chr12 24101965 24102002 -120180487 + (TA)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr12 24102256 24102278 -120180211 + AT_rich Low_complexity Low_complexity 1 22 0 423 353 40 6 chr12 24103506 24103679 -120178810 + MIR SINE MIR 20 198 -64 211 281 194 56 chr12 24103738 24103934 -120178555 + MIR SINE MIR 6 228 -34 1926 138 45 0 chr12 24104396 24104687 -120177802 - AluJo SINE Alu -8 304 1 1527 225 87 18 chr12 24104906 24105341 -120177148 + MLT1C LTR MaLR 1 465 -2 220 309 172 50 chr12 24105416 24105794 -120176695 + L2 LINE L2 2252 2675 -639 1805 157 3 13 chr12 24105839 24106139 -120176350 + AluJb SINE Alu 2 298 -14 410 238 119 0 chr12 24106274 24106400 -120176089 + MER103 DNA DNA 1 141 -25 758 168 15 0 chr12 24107429 24107560 -120174929 + AluJb SINE Alu 3 135 -177 1743 97 12 8 chr12 24107560 24107819 -120174670 + AluY SINE Alu 1 260 -51 420 37 0 0 chr12 24107860 24107914 -120174575 + (TA)n Simple_repeat Simple_repeat 2 55 0 698 186 12 78 chr12 24107933 24108119 -120174370 + AluJb SINE Alu 145 312 0 187 333 21 21 chr12 24108728 24108821 -120173668 + MIR3 SINE MIR 110 202 -6 185 360 100 26 chr12 24110141 24110480 -120172009 + L2 LINE L2 1716 2079 -1235 1004 263 59 17 chr12 24110524 24110813 -120171676 + MLT1F1 LTR MaLR 1 301 -266 21 57 0 0 chr12 24110813 24110848 -120171641 + AT_rich Low_complexity Low_complexity 1 35 0 362 188 0 0 chr12 24110848 24110917 -120171572 + MLT1F1 LTR MaLR 491 559 -8 293 139 0 0 chr12 24110983 24111026 -120171463 + MLT1F1 LTR MaLR 517 559 -8 295 346 79 20 chr12 24111106 24111360 -120171129 + L2 LINE L2 2148 2416 -898 307 306 39 50 chr12 24112687 24112867 -120169622 - MIR SINE MIR -70 192 15 2334 206 21 22 chr12 24114357 24114962 -120167527 + MLT2B3 LTR ERVL 1 520 0 24 32 0 0 chr12 24115577 24115608 -120166881 + AT_rich Low_complexity Low_complexity 1 31 0 270 267 0 99 chr12 24116273 24116374 -120166115 + MIR SINE MIR 37 128 -80 193 327 115 39 chr12 24117429 24117585 -120164904 - MIR SINE MIR -36 226 59 585 345 170 22 chr12 24118782 24119277 -120163212 + L2 LINE L2 1851 2418 -896 25 0 0 0 chr12 24119659 24119684 -120162805 + AT_rich Low_complexity Low_complexity 1 25 0 2385 76 0 3 chr12 24119689 24119991 -120162498 + AluY SINE Alu 1 301 -10 21 0 0 0 chr12 24120123 24120144 -120162345 + AT_rich Low_complexity Low_complexity 1 21 0 2100 129 0 13 chr12 24120186 24120503 -120161986 - AluSq SINE Alu 0 313 1 1231 247 87 78 chr12 24120581 24120803 -120161686 + L2 LINE L2 2475 2694 -619 1854 112 0 4 chr12 24120803 24121053 -120161436 + AluSg SINE Alu 35 283 -27 1231 247 87 78 chr12 24121053 24121651 -120160838 + L2 LINE L2 2694 3313 0 736 341 70 24 chr12 24123196 24123565 -120158924 + L2 LINE L2 2928 3313 0 305 336 126 8 chr12 24123569 24123807 -120158682 + L2 LINE L2 2182 2447 -867 243 0 0 0 chr12 24125638 24125651 -120156838 + (CA)n Simple_repeat Simple_repeat 1 40 0 243 0 0 0 chr12 24125651 24125678 -120156811 + (CA)n Simple_repeat Simple_repeat 2 28 0 2090 108 7 19 chr12 24125692 24125999 -120156490 - AluSx SINE Alu -9 303 1 2172 120 10 0 chr12 24126340 24126648 -120155841 + AluY SINE Alu 1 311 0 790 152 129 29 chr12 24126782 24126953 -120155536 + MER5A DNA MER1_type 2 189 0 303 104 0 0 chr12 24127433 24127481 -120155008 + (CAAAG)n Simple_repeat Simple_repeat 3 50 0 29 28 0 0 chr12 24130387 24130423 -120152066 + AT_rich Low_complexity Low_complexity 1 36 0 270 56 0 0 chr12 24133223 24133259 -120149230 + (TG)n Simple_repeat Simple_repeat 2 37 0 1603 236 86 52 chr12 24134121 24134711 -120147778 + LTR9 LTR ERV1 1 610 -2 34 0 0 0 chr12 24135412 24135446 -120147043 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr12 24135646 24135674 -120146815 + AT_rich Low_complexity Low_complexity 1 28 0 223 355 130 0 chr12 24135752 24135890 -120146599 - MIR SINE MIR -60 202 47 241 255 0 0 chr12 24138279 24138330 -120144159 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 263 49 24 0 chr12 24139298 24139339 -120143150 + (TA)n Simple_repeat Simple_repeat 2 43 0 203 147 0 0 chr12 24140064 24140098 -120142391 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 231 333 15 0 chr12 24140148 24140214 -120142275 + L2 LINE L2 3242 3308 -5 69 48 0 0 chr12 24141261 24141365 -120141124 + AT_rich Low_complexity Low_complexity 1 104 0 24 0 0 0 chr12 24141768 24141792 -120140697 + AT_rich Low_complexity Low_complexity 1 24 0 837 159 0 0 chr12 24143861 24144014 -120138475 + FLAM_C SINE Alu 2 154 0 21 36 0 0 chr12 24144464 24144492 -120137997 + AT_rich Low_complexity Low_complexity 1 28 0 2366 154 12 12 chr12 24144492 24144716 -120137773 - L1MA7 LINE L1 -270 6021 5795 357 24 0 0 chr12 24144716 24144758 -120137731 + (TG)n Simple_repeat Simple_repeat 2 43 0 2366 154 12 12 chr12 24144758 24144935 -120137554 - L1MA7 LINE L1 -495 5796 5620 23 0 0 0 chr12 24145277 24145300 -120137189 + AT_rich Low_complexity Low_complexity 1 23 0 24 41 0 20 chr12 24145561 24145588 -120136901 + AT_rich Low_complexity Low_complexity 1 28 -20 428 126 115 0 chr12 24145588 24145675 -120136814 - L1MA4 LINE L1 -8 6292 6196 24 41 0 20 chr12 24145675 24145696 -120136793 + AT_rich Low_complexity Low_complexity 28 48 0 439 303 38 0 chr12 24146504 24146636 -120135853 - MER115 DNA AcHobo -27 666 530 3345 176 5 34 chr12 24146636 24147280 -120135209 + L1MB3 LINE L1 5420 6044 -139 541 248 23 0 chr12 24147280 24147409 -120135080 - MER115 DNA AcHobo -157 536 405 218 278 28 14 chr12 24147532 24147604 -120134885 - L2 LINE L2 -274 2998 2926 2176 203 73 32 chr12 24147793 24148163 -120134326 - L1MB7 LINE L1 -294 5890 5484 2178 110 0 7 chr12 24148163 24148463 -120134026 - AluSg SINE Alu -12 298 1 2176 203 73 32 chr12 24148463 24148693 -120133796 - L1MB7 LINE L1 -700 5484 5265 2453 124 14 11 chr12 24148702 24149138 -120133351 - L1PA13 LINE L1 -2 6161 5627 1705 148 13 34 chr12 24150211 24150509 -120131980 + AluJo SINE Alu 14 305 -7 203 258 45 0 chr12 24152044 24152110 -120130379 - MIR SINE MIR -128 134 66 222 167 42 0 chr12 24152387 24152435 -120130054 + (TTG)n Simple_repeat Simple_repeat 2 51 0 462 306 121 35 chr12 24152650 24152882 -120129607 - MIR SINE MIR -1 261 10 200 370 30 0 chr12 24153785 24153885 -120128604 - L2 LINE L2 -554 2760 2658 369 304 78 0 chr12 24154361 24154463 -120128026 - L2 LINE L2 0 3313 3204 1422 156 119 25 chr12 24154670 24154990 -120127499 + L1MB4 LINE L1 5831 6180 0 510 208 16 8 chr12 24157166 24157291 -120125198 + L1MB3 LINE L1 5343 5468 -703 2928 186 5 3 chr12 24157305 24157887 -120124602 + L1MB3 LINE L1 5601 6183 0 22 35 0 0 chr12 24157929 24157958 -120124531 + AT_rich Low_complexity Low_complexity 1 29 0 258 266 211 9 chr12 24158209 24158318 -120124171 + L1ME1 LINE L1 6011 6141 -25 2241 93 3 0 chr12 24159118 24159420 -120123069 - AluSg SINE Alu -7 303 1 186 224 0 0 chr12 24159590 24159639 -120122850 + GA-rich Low_complexity Low_complexity 4 52 0 21 0 0 0 chr12 24160185 24160206 -120122283 + AT_rich Low_complexity Low_complexity 1 21 0 227 299 14 36 chr12 24160230 24160348 -120122141 - MIR SINE MIR -66 142 50 758 117 70 0 chr12 24160353 24160481 -120122008 + MER85 DNA T2_type 2 138 -1 426 328 24 0 chr12 24161079 24161259 -120121230 - MIR SINE MIR -41 221 37 24 0 0 0 chr12 24162314 24162338 -120120151 + AT_rich Low_complexity Low_complexity 1 24 0 233 303 0 53 chr12 24162953 24163029 -120119460 + MIR3 SINE MIR 99 170 -38 21 36 0 0 chr12 24163599 24163627 -120118862 + AT_rich Low_complexity Low_complexity 1 28 0 753 244 94 5 chr12 24164155 24164356 -120118133 - MIR SINE MIR -42 220 2 21 36 0 0 chr12 24166435 24166463 -120116026 + AT_rich Low_complexity Low_complexity 1 28 0 218 214 0 0 chr12 24167124 24167166 -120115323 + GA-rich Low_complexity Low_complexity 3 44 0 970 307 66 39 chr12 24167651 24168088 -120114401 - L2 LINE L2 -2 3311 2863 383 333 71 85 chr12 24168444 24168810 -120113679 - L2 LINE L2 0 3272 2912 486 329 55 79 chr12 24168820 24168880 -120113609 - L2 LINE L2 -559 2755 2695 2438 44 0 25 chr12 24168880 24169201 -120113288 + L1PA5 LINE L1 5841 6153 -1 486 329 55 79 chr12 24169201 24169648 -120112841 - L2 LINE L2 -619 2695 2260 22 0 0 0 chr12 24169674 24169696 -120112793 + AT_rich Low_complexity Low_complexity 1 22 0 232 338 48 14 chr12 24170407 24170552 -120111937 + MIR SINE MIR 111 260 -2 26 64 0 0 chr12 24172716 24172763 -120109726 + AT_rich Low_complexity Low_complexity 1 47 0 201 161 0 0 chr12 24174701 24174732 -120107757 + (CA)n Simple_repeat Simple_repeat 2 32 0 308 286 13 0 chr12 24175423 24175500 -120106989 - L2 LINE L2 -7 3265 3188 245 286 51 20 chr12 24175508 24175606 -120106883 + MER69A DNA AcHobo 1 101 -76 * 357 172 121 121 chr12 24175588 24175786 -120106703 + MER69 DNA AcHobo 2328 2525 -1 1317 330 126 46 chr12 24175795 24176321 -120106168 - L2 LINE L2 -99 3173 2691 2782 3 0 0 chr12 24176321 24176624 -120105865 + AluYa5 SINE Alu 1 303 -8 1317 330 126 46 chr12 24176624 24177378 -120105111 - L2 LINE L2 -581 2691 1791 361 281 34 0 chr12 24177384 24177473 -120105016 + MER5A DNA MER1_type 7 98 -91 1076 274 160 13 chr12 24177474 24177950 -120104539 + MLT1F1 LTR MaLR 5 543 -24 195 322 17 0 chr12 24177977 24178036 -120104453 + MER5A DNA MER1_type 124 183 -6 368 224 0 12 chr12 24178126 24178211 -120104278 - L2 LINE L2 -1625 1689 1606 10815 161 30 30 chr12 24179351 24179678 -120102811 - Tigger1 DNA MER2_type 0 2418 2093 1595 195 26 0 chr12 24179678 24179980 -120102509 - AluJo SINE Alu 0 312 3 10815 161 30 30 chr12 24179980 24181587 -120100902 - Tigger1 DNA MER2_type -325 2093 483 1685 156 28 7 chr12 24181595 24181883 -120100606 - Tigger1 DNA MER2_type -2123 295 2 1617 221 8 28 chr12 24181922 24182320 -120100169 + MLT1B LTR MaLR 1 390 0 260 384 30 44 chr12 24184312 24184515 -120097974 - L2 LINE L2 -528 2786 2587 290 204 32 65 chr12 24184723 24184743 -120097746 - MIR SINE MIR -39 223 204 258 105 0 0 chr12 24184743 24184781 -120097708 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 290 204 32 65 chr12 24184781 24184853 -120097636 - MIR SINE MIR -58 204 134 182 194 0 0 chr12 24185300 24185331 -120097158 + L2 LINE L2 3263 3293 -20 558 325 106 58 chr12 24185625 24186278 -120096211 + L2 LINE L2 1831 2514 -800 719 89 18 0 chr12 24186515 24186627 -120095862 + (TGGA)n Simple_repeat Simple_repeat 1 114 0 1625 177 136 3 chr12 24187054 24187370 -120095119 - MLT1A1 LTR MaLR -7 358 1 471 286 48 0 chr12 24187377 24187503 -120094986 + L2 LINE L2 3141 3272 0 27 0 0 0 chr12 24188506 24188533 -120093956 + AT_rich Low_complexity Low_complexity 1 27 0 244 326 49 36 chr12 24189542 24189719 -120092770 - MIR SINE MIR -61 201 32 308 242 30 85 chr12 24189974 24190139 -120092350 + L1ME4a LINE L1 5681 5836 -1972 234 278 52 17 chr12 24190294 24190409 -120092080 + L1ME4a LINE L1 5914 6032 -89 344 273 120 42 chr12 24190683 24190899 -120091590 + MLT1J LTR MaLR 279 511 0 2158 110 7 7 chr12 24192150 24192460 -120090029 + AluSx SINE Alu 1 310 -2 1897 126 48 0 chr12 24193230 24193524 -120088965 + AluSx SINE Alu 1 308 -4 273 313 75 55 chr12 24193820 24194021 -120088468 - MIR SINE MIR -37 225 21 419 272 24 16 chr12 24194285 24194410 -120088079 - MER119 DNA MER1_type 0 583 458 522 267 92 0 chr12 24194417 24194537 -120087952 - MER119 DNA MER1_type -452 131 1 216 158 0 0 chr12 24195672 24195710 -120086779 + (TA)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chr12 24196284 24196312 -120086177 + AT_rich Low_complexity Low_complexity 1 28 0 22 106 0 0 chr12 24197308 24197393 -120085096 + AT_rich Low_complexity Low_complexity 1 85 0 192 40 0 0 chr12 24198286 24198311 -120084178 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 408 351 28 24 chr12 24199359 24199570 -120082919 - L3 LINE CR1 -129 1448 1237 270 305 91 64 chr12 24199584 24199771 -120082718 - MIR3 SINE MIR 0 208 17 245 358 183 12 chr12 24199831 24200071 -120082418 - L3 LINE CR1 -422 1155 875 385 297 7 35 chr12 24200211 24200356 -120082133 - L2 LINE L2 -15 3298 3158 230 267 33 11 chr12 24200605 24200695 -120081794 + GA-rich Low_complexity Low_complexity 1 92 0 271 360 43 12 chr12 24201043 24201204 -120081285 - MIR3 SINE MIR -12 196 31 582 221 39 0 chr12 24201445 24201572 -120080917 - MER82 DNA MER2_type -2 651 520 * 1937 208 16 3 chr12 24201570 24201949 -120080540 - MER82 DNA MER2_type -269 384 1 300 313 83 71 chr12 24202587 24202913 -120079576 - L2 LINE L2 -4 3268 2939 187 338 99 49 chr12 24203629 24204306 -120078183 - L2 LINE L2 -1268 2046 1336 206 121 0 0 chr12 24205603 24205636 -120076853 + (A)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr12 24207206 24207227 -120075262 + AT_rich Low_complexity Low_complexity 1 21 0 899 147 35 6 chr12 24207299 24207469 -120075020 + L1MB7 LINE L1 5991 6165 -19 242 295 13 83 chr12 24207582 24207738 -120074751 - MIR SINE MIR -40 222 78 2252 100 0 0 chr12 24207874 24208175 -120074314 - AluSq SINE Alu -12 301 1 1368 168 42 23 chr12 24208915 24209224 -120073265 + L1 LINE L1 4819 5133 -1013 1140 179 49 0 chr12 24209221 24209444 -120073045 + L1MA9 LINE L1 6040 6273 -39 * 259 309 0 0 chr12 24209598 24209666 -120072823 - L2 LINE L2 -19 3294 3227 288 365 141 6 chr12 24209921 24210091 -120072398 + L2 LINE L2 3075 3267 -5 21 0 0 0 chr12 24211802 24211823 -120070666 + AT_rich Low_complexity Low_complexity 1 21 0 260 228 13 25 chr12 24213672 24213751 -120068738 + CT-rich Low_complexity Low_complexity 2 79 0 267 330 52 17 chr12 24217274 24217389 -120065100 + L2 LINE L2 3190 3308 -5 364 277 138 25 chr12 24217392 24217551 -120064938 - L3b LINE CR1 -96 1487 1311 183 297 109 0 chr12 24218577 24218641 -120063848 + L2 LINE L2 2990 3060 -212 214 372 83 42 chr12 24219199 24219535 -120062954 + L2 LINE L2 2828 3177 -95 578 288 81 77 chr12 24219850 24220643 -120061846 - L1MEd LINE L1 -2476 3653 2845 2065 118 0 13 chr12 24220643 24220947 -120061542 + AluSx SINE Alu 1 300 -12 578 288 81 77 chr12 24220947 24221614 -120060875 - L1MEd LINE L1 -3284 2845 2183 1877 151 0 3 chr12 24221631 24221916 -120060573 - AluSx SINE Alu -28 284 1 638 274 65 21 chr12 24222644 24223019 -120059470 - L1MEd LINE L1 -4903 1216 960 592 261 134 25 chr12 24223054 24223330 -120059159 - L1ME1 LINE L1 -12 6221 5913 1891 163 3 3 chr12 24223331 24223626 -120058863 + AluJb SINE Alu 3 297 -15 741 211 127 9 chr12 24223626 24223839 -120058650 - L1ME1 LINE L1 -1291 4924 4687 * 4377 243 80 48 chr12 24223838 24224152 -120058337 - L1ME1 LINE L1 -2022 4193 3891 2629 52 0 0 chr12 24224152 24224461 -120058028 + AluY SINE Alu 1 309 -2 4377 243 80 48 chr12 24224461 24226049 -120056440 - L1ME1 LINE L1 -2324 3891 2258 1662 190 0 0 chr12 24226049 24226339 -120056150 - AluSx SINE Alu -18 294 5 4377 243 80 48 chr12 24226339 24226646 -120055843 - L1ME1 LINE L1 -3957 2258 1962 315 264 187 33 chr12 24226658 24226840 -120055649 - L1ME1 LINE L1 -4919 1477 1268 1871 261 155 45 chr12 24226844 24227906 -120054583 - L1ME1 LINE L1 -5180 1216 38 562 272 41 72 chr12 24228392 24228656 -120053833 + MLT1I LTR MaLR 63 304 -105 21 0 0 0 chr12 24229334 24229355 -120053134 + AT_rich Low_complexity Low_complexity 1 21 0 255 174 0 29 chr12 24229388 24229457 -120053032 - L1MC4 LINE L1 -1336 6706 6640 23 0 0 0 chr12 24229659 24229682 -120052807 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 24229844 24229865 -120052624 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 24231244 24231265 -120051224 + (TG)n Simple_repeat Simple_repeat 1 21 0 237 33 0 0 chr12 24232220 24232250 -120050239 + (CA)n Simple_repeat Simple_repeat 2 31 0 242 185 0 0 chr12 24233162 24233216 -120049273 - LTR66 LTR ERVL -163 447 394 219 69 0 0 chr12 24233973 24234002 -120048487 + (CA)n Simple_repeat Simple_repeat 2 30 0 227 390 92 29 chr12 24236793 24237313 -120045176 - L2 LINE L2 -340 2974 2422 1672 173 0 19 chr12 24237582 24237895 -120044594 - AluJo SINE Alu -3 309 3 222 139 23 0 chr12 24238595 24238638 -120043851 + (CA)n Simple_repeat Simple_repeat 2 45 0 6050 39 0 0 chr12 24238738 24239465 -120043024 - L1PA5 LINE L1 -5 6149 5423 387 318 142 14 chr12 24240375 24240586 -120041903 - MIR SINE MIR -5 257 20 289 311 53 30 chr12 24241043 24241175 -120041314 - MIR SINE MIR -105 157 23 1627 209 36 47 chr12 24241431 24241901 -120040588 + MLT1C LTR MaLR 1 465 -2 222 91 0 0 chr12 24242140 24242173 -120040316 + (TG)n Simple_repeat Simple_repeat 2 34 0 313 141 28 0 chr12 24242189 24242260 -120040229 + (TA)n Simple_repeat Simple_repeat 2 74 0 2001 143 7 0 chr12 24242303 24242603 -120039886 + AluSx SINE Alu 1 302 -10 1916 147 7 0 chr12 24242833 24243139 -120039350 + AluSx SINE Alu 1 308 -4 1858 67 25 0 chr12 24243547 24243813 -120038676 + AluY SINE Alu 38 309 0 216 0 0 0 chr12 24244302 24244326 -120038163 + (A)n Simple_repeat Simple_repeat 1 24 0 266 272 84 73 chr12 24245157 24245348 -120037141 - MIR SINE MIR -30 232 40 22 0 0 0 chr12 24246715 24246737 -120035752 + AT_rich Low_complexity Low_complexity 1 22 0 1583 142 6 107 chr12 24247954 24248300 -120034189 + AluJo SINE Alu 2 312 0 289 318 132 16 chr12 24249418 24249547 -120032942 + MIR3 SINE MIR 34 177 -31 2286 78 3 0 chr12 24249563 24249874 -120032615 - AluSp SINE Alu 0 312 1 24 53 0 0 chr12 24351011 24351049 -119931440 + AT_rich Low_complexity Low_complexity 1 38 0 189 0 0 0 chr12 24352106 24352127 -119930362 + (T)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr12 24352211 24352236 -119930253 + AT_rich Low_complexity Low_complexity 1 25 0 306 0 0 0 chr12 24353179 24353213 -119929276 + (TA)n Simple_repeat Simple_repeat 2 35 0 1426 167 115 15 chr12 24353463 24353634 -119928855 - AluJo SINE Alu 0 312 160 261 0 0 0 chr12 24353634 24353663 -119928826 + (GCTG)n Simple_repeat Simple_repeat 3 31 0 644 82 0 10 chr12 24353663 24353760 -119928729 + (CAGA)n Simple_repeat Simple_repeat 1 96 0 1426 167 115 15 chr12 24353760 24353856 -119928633 - AluJo SINE Alu -151 161 17 3649 246 47 29 chr12 24354942 24356089 -119926400 - L1MEc LINE L1 -2685 3530 2388 1497 192 7 36 chr12 24356089 24356391 -119926098 + AluJb SINE Alu 1 293 -19 3649 246 47 29 chr12 24356391 24356762 -119925727 - L1MEc LINE L1 -3827 2388 2025 883 180 21 31 chr12 24356767 24356961 -119925528 - AluJb SINE Alu 0 312 121 255 270 110 0 chr12 24358101 24358201 -119924288 - HAL1b LINE L1 -419 929 819 24 0 0 0 chr12 24358217 24358241 -119924248 + AT_rich Low_complexity Low_complexity 1 24 0 2083 135 0 0 chr12 24358328 24358632 -119923857 - AluSx SINE Alu -8 304 1 541 290 0 12 chr12 24358809 24358978 -119923511 - FRAM SINE Alu 0 176 10 198 103 0 0 chr12 24358982 24359011 -119923478 + (GCTG)n Simple_repeat Simple_repeat 3 31 0 189 0 0 0 chr12 24359865 24359886 -119922603 + (A)n Simple_repeat Simple_repeat 1 21 0 1988 133 0 40 chr12 24361282 24361606 -119920883 - AluJo SINE Alu -1 311 1 186 156 0 0 chr12 24361669 24361714 -119920775 + A-rich Low_complexity Low_complexity 1 45 0 207 0 0 0 chr12 24361932 24361955 -119920534 + (T)n Simple_repeat Simple_repeat 1 23 0 6804 231 69 38 chr12 24362607 24364390 -119918099 + L1ME2 LINE L1 2936 4662 -1500 2130 107 45 0 chr12 24364390 24364680 -119917809 + AluSg SINE Alu 1 303 -7 6804 231 69 38 chr12 24364680 24364743 -119917746 + L1ME2 LINE L1 4662 4722 -1440 1229 186 0 128 chr12 24364743 24365087 -119917402 + AluJo SINE Alu 1 300 -2 6804 231 69 38 chr12 24365087 24366328 -119916161 + L1ME2 LINE L1 4722 6155 -7 261 346 30 38 chr12 24366368 24366501 -119915988 + L2 LINE L2 3136 3267 -5 493 380 69 20 chr12 24366518 24367055 -119915434 - L2 LINE L2 -917 2397 1835 192 40 0 0 chr12 24367743 24367768 -119914721 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 225 65 0 0 chr12 24368032 24368063 -119914426 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 846 294 55 41 chr12 24368288 24368946 -119913543 - L2 LINE L2 -94 3219 2497 204 267 13 27 chr12 24369901 24369976 -119912513 + (TATG)n Simple_repeat Simple_repeat 2 75 0 218 360 63 18 chr12 24371312 24371423 -119911066 + L2 LINE L2 3148 3263 -9 213 274 85 28 chr12 24372063 24372169 -119910320 - L2 LINE L2 -7 3265 3154 198 143 0 0 chr12 24374465 24374500 -119907989 + (CA)n Simple_repeat Simple_repeat 2 36 0 327 214 23 92 chr12 24374909 24375040 -119907449 + LTR65 LTR ERV1 4 125 -544 308 237 82 10 chr12 24375310 24375407 -119907082 + LTR65 LTR ERV1 560 663 -6 465 288 34 7 chr12 24376367 24376513 -119905976 + MIR SINE MIR 48 197 -65 2118 110 3 3 chr12 24377287 24377597 -119904892 + AluSg SINE Alu 1 310 0 180 0 0 0 chr12 24379939 24379959 -119902530 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3312 256 40 83 chr12 24382487 24384460 -119898029 + L1MEc LINE L1 49 1932 -4464 1569 165 0 72 chr12 24384460 24384781 -119897708 + AluJo SINE Alu 1 298 -14 3312 256 40 83 chr12 24384781 24384854 -119897635 + L1MEc LINE L1 1932 2007 -4389 485 234 28 35 chr12 24384858 24384999 -119897490 + AluJb SINE Alu 113 252 -60 182 37 37 0 chr12 24385642 24385669 -119896820 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 24 0 0 0 chr12 24385830 24385854 -119896635 + AT_rich Low_complexity Low_complexity 1 24 0 969 166 132 31 chr12 24386526 24386815 -119895674 - MER33 DNA MER1_type -6 318 1 305 225 0 38 chr12 24387383 24387463 -119895026 + MIR3 SINE MIR 125 201 -7 204 180 16 49 chr12 24387744 24387805 -119894684 + A-rich Low_complexity Low_complexity 1 59 0 378 304 44 150 chr12 24387990 24388490 -119893999 - L2 LINE L2 -1 3271 2825 839 94 86 0 chr12 24388787 24388915 -119893574 + MER85 DNA T2_type 1 139 0 754 207 36 47 chr12 24389111 24389304 -119893185 - AluJo SINE Alu -2 310 120 1601 220 72 37 chr12 24389578 24390064 -119892425 - MLT1D LTR MaLR 0 505 3 886 335 121 19 chr12 24390948 24391390 -119891099 - L2 LINE L2 -8 3305 2909 1663 188 0 0 chr12 24391390 24391683 -119890806 + AluJo SINE Alu 1 293 -19 886 335 121 19 chr12 24391683 24392143 -119890346 - L2 LINE L2 -404 2909 2310 1393 174 3 68 chr12 24392971 24393264 -119889225 + AluSx SINE Alu 1 274 -38 216 0 0 0 chr12 24393269 24393293 -119889196 + (CAAT)n Simple_repeat Simple_repeat 3 26 0 1568 210 41 25 chr12 24393405 24393772 -119888717 + MLT1A2 LTR MaLR 2 374 0 284 286 26 0 chr12 24393924 24394001 -119888488 + GA-rich Low_complexity Low_complexity 4 82 0 321 330 96 42 chr12 24394044 24394356 -119888133 + L2 LINE L2 2598 2926 -388 243 248 58 107 chr12 24394591 24394712 -119887777 + L2 LINE L2 3155 3269 -3 1318 155 4 39 chr12 24394951 24395183 -119887306 + AluJo SINE Alu 1 224 -88 454 250 28 9 chr12 24395226 24395334 -119887155 - MER46C DNA MER2_type -79 259 150 1764 154 3 46 chr12 24397620 24397743 -119884746 + AluJb SINE Alu 1 128 -184 678 47 0 0 chr12 24397743 24397829 -119884660 + (TATG)n Simple_repeat Simple_repeat 2 87 0 1764 154 3 46 chr12 24397829 24398029 -119884460 + AluJb SINE Alu 128 310 -2 214 274 0 0 chr12 24398299 24398361 -119884128 + (TA)n Simple_repeat Simple_repeat 2 63 0 1550 189 11 14 chr12 24399295 24399576 -119882913 + AluJo SINE Alu 5 284 -28 3484 183 61 25 chr12 24400111 24400865 -119881624 + L1MB5 LINE L1 5385 6165 -9 568 295 62 13 chr12 24400884 24401108 -119881381 + L1MEc LINE L1 -563 4294966967 -6613 233 330 11 11 chr12 24401189 24401280 -119881209 + L1MEc LINE L1 178 268 -6016 * 357 321 92 48 chr12 24401276 24401647 -119880842 + L1MEc LINE L1 223 609 -5671 1994 240 56 56 chr12 24401728 24402401 -119880088 + L1MEc LINE L1 619 1292 -5092 2156 109 3 10 chr12 24402401 24402704 -119879785 + AluSg1 SINE Alu 1 301 -8 1994 240 56 56 chr12 24402704 24403018 -119879471 + L1MEc LINE L1 1291 1604 -4780 333 0 0 0 chr12 24403019 24403056 -119879433 + (TG)n Simple_repeat Simple_repeat 2 38 0 1940 172 25 20 chr12 24403081 24403489 -119879000 + L1MA9 LINE L1 5896 6305 -7 747 275 78 58 chr12 24403595 24403940 -119878549 + L1MEc LINE L1 1577 2079 -4484 225 188 62 12 chr12 24403949 24404029 -119878460 + (TA)n Simple_repeat Simple_repeat 1 84 0 902 254 75 69 chr12 24404067 24404744 -119877745 + L1MEc LINE L1 1898 2578 -3985 842 190 58 116 chr12 24404770 24404985 -119877504 + L1MEc LINE L1 2813 2998 -3384 1533 200 4 7 chr12 24404985 24405260 -119877229 - AluJb SINE Alu -28 284 11 842 190 58 116 chr12 24405260 24405423 -119877066 + L1MEc LINE L1 2998 3169 -3213 575 205 116 0 chr12 24405427 24405539 -119876950 + FLAM_C SINE Alu 1 125 -18 828 217 0 33 chr12 24405698 24405878 -119876611 + FRAM SINE Alu 3 176 0 6759 218 50 55 chr12 24405890 24409143 -119873346 + L1MB8 LINE L1 3013 6241 -6 294 340 42 56 chr12 24409332 24409476 -119873013 + L2 LINE L2 2916 3057 -256 227 206 48 48 chr12 24409562 24409625 -119872864 + L2 LINE L2 3251 3313 0 2187 91 3 0 chr12 24410734 24411020 -119871469 + AluSx SINE Alu 5 291 -21 807 161 0 0 chr12 24411020 24411200 -119871289 + (TA)n Simple_repeat Simple_repeat 1 180 0 699 195 0 0 chr12 24411220 24411498 -119870991 + (TA)n Simple_repeat Simple_repeat 1 278 0 324 70 0 0 chr12 24411491 24411534 -119870955 + (CA)n Simple_repeat Simple_repeat 2 44 0 * 1193 232 64 90 chr12 24412476 24413023 -119869466 + MLT1F LTR MaLR 2 534 -8 194 372 66 15 chr12 24413037 24413174 -119869315 + MIR3 SINE MIR 14 157 -51 372 258 46 66 chr12 24413918 24414069 -119868420 + L2 LINE L2 3166 3313 0 1892 155 0 13 chr12 24414363 24414666 -119867823 + AluSx SINE Alu 1 299 -13 206 225 0 0 chr12 24414968 24415008 -119867481 + (CA)n Simple_repeat Simple_repeat 1 40 0 408 111 0 0 chr12 24418771 24418834 -119863655 + (TC)n Simple_repeat Simple_repeat 2 64 0 2072 115 10 14 chr12 24421033 24421312 -119861177 + AluSx SINE Alu 7 286 -26 310 68 0 0 chr12 24421312 24421356 -119861133 + (TAAAA)n Simple_repeat Simple_repeat 2 110 0 2072 115 10 14 chr12 24421356 24421372 -119861117 + AluSx SINE Alu 286 301 -11 2009 150 0 6 chr12 24422224 24422537 -119859952 + AluSx SINE Alu 1 311 -1 182 177 0 161 chr12 24422537 24422590 -119859899 - MIR SINE MIR -145 63 20 1363 193 36 18 chr12 24422699 24422979 -119859510 - AluJb SINE Alu -23 289 5 234 322 0 0 chr12 24423138 24423197 -119859292 - L3 LINE CR1 -1 1576 1518 620 245 0 34 chr12 24425699 24425846 -119856643 - L2 LINE L2 -2 3311 3170 324 269 0 0 chr12 24427542 24427609 -119854880 - L2 LINE L2 -52 3261 3195 853 164 0 27 chr12 24430179 24430325 -119852164 + FLAM_C SINE Alu 1 142 -1 275 258 247 10 chr12 24430890 24431084 -119851405 + L2 LINE L2 2093 2332 -982 353 262 47 19 chr12 24431952 24432059 -119850430 + L2 LINE L2 3163 3272 0 21 36 0 0 chr12 24432976 24433004 -119849485 + AT_rich Low_complexity Low_complexity 1 28 0 1411 248 0 0 chr12 24433004 24433286 -119849203 - AluJo SINE Alu -30 282 1 854 294 24 0 chr12 24433622 24433870 -119848619 - MIR SINE MIR -5 257 4 4195 152 26 17 chr12 24433935 24435283 -119847206 + L1MA8 LINE L1 4668 6028 -263 212 294 76 43 chr12 24443562 24443654 -119838835 - L2 LINE L2 0 3272 3178 28 71 0 0 chr12 24443733 24443789 -119838700 + AT_rich Low_complexity Low_complexity 1 56 0 261 316 25 0 chr12 24443986 24444065 -119838424 + MIR SINE MIR 63 143 -119 2375 73 0 3 chr12 24444327 24444630 -119837859 + AluY SINE Alu 1 302 -9 250 339 9 18 chr12 24447677 24447786 -119834703 + MIR SINE MIR 155 262 0 231 246 0 53 chr12 24448520 24448577 -119833912 + L2 LINE L2 3219 3272 0 839 309 20 4 chr12 24448850 24449096 -119833393 + MIR SINE MIR 3 252 -10 1297 153 9 9 chr12 24449120 24449335 -119833154 - AluJb SINE Alu -97 215 1 2193 89 0 41 chr12 24450409 24450723 -119831766 - AluSq SINE Alu -12 301 1 483 362 24 14 chr12 24451821 24452028 -119830461 - MIR SINE MIR -6 256 48 2700 183 0 56 chr12 24452168 24452796 -119829693 + L1MB8 LINE L1 5586 6178 0 288 0 0 0 chr12 24453376 24453408 -119829081 + (T)n Simple_repeat Simple_repeat 1 32 0 201 175 0 0 chr12 24453820 24453860 -119828629 + A-rich Low_complexity Low_complexity 1 40 0 255 288 160 0 chr12 24454437 24454562 -119827927 + MIR SINE MIR 106 250 -12 326 267 17 50 chr12 24455168 24455288 -119827201 + L1 LINE L1 3730 3845 -2301 532 317 75 46 chr12 24455484 24455922 -119826567 + L2 LINE L2 1707 2157 -1157 23 33 0 0 chr12 24456141 24456171 -119826318 + AT_rich Low_complexity Low_complexity 1 30 0 321 70 0 0 chr12 24456923 24456966 -119825523 - AluSq SINE Alu -8 292 250 1478 91 0 10 chr12 24456966 24457165 -119825324 - AluSq SINE Alu -116 197 1 609 347 36 5 chr12 24457527 24457749 -119824740 - MIR SINE MIR -14 248 20 2819 6 0 10 chr12 24460429 24460743 -119821746 + AluYa5 SINE Alu 1 311 0 22 35 0 0 chr12 24461187 24461216 -119821273 + AT_rich Low_complexity Low_complexity 1 29 0 180 77 0 0 chr12 24462525 24462551 -119819938 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 890 272 20 16 chr12 24463870 24464116 -119818373 - MIR SINE MIR -1 261 15 882 281 117 32 chr12 24464358 24464760 -119817729 + MLT1K LTR MaLR 142 577 -11 318 299 52 0 chr12 24466981 24467078 -119815411 + L2 LINE L2 3170 3271 -1 317 184 153 52 chr12 24467482 24467606 -119814883 + MIR SINE MIR 3 139 -69 185 323 86 54 chr12 24467950 24468043 -119814446 + MER5A DNA MER1_type 3 98 -91 26 30 0 0 chr12 24468293 24468326 -119814163 + AT_rich Low_complexity Low_complexity 1 33 0 354 236 62 42 chr12 24468361 24468505 -119813984 + L2 LINE L2 3165 3311 -2 2408 97 0 0 chr12 24469102 24469411 -119813078 + AluSc SINE Alu 1 309 0 186 250 83 0 chr12 24470141 24470189 -119812300 + MIR SINE MIR 202 253 -9 2319 76 3 3 chr12 24471598 24471902 -119810587 + AluSx SINE Alu 1 304 -8 315 314 126 0 chr12 24472733 24472892 -119809597 - MIR SINE MIR -2 260 82 2366 74 10 3 chr12 24472911 24473220 -119809269 - AluY SINE Alu 0 311 1 595 330 44 6 chr12 24473387 24473569 -119808920 - MIR3 SINE MIR -5 203 15 279 335 67 18 chr12 24473995 24474159 -119808330 - MIR3 SINE MIR -35 173 2 244 169 0 68 chr12 24475487 24475546 -119806943 + Alu SINE Alu 236 290 -10 198 0 0 0 chr12 24476119 24476141 -119806348 + (A)n Simple_repeat Simple_repeat 1 22 0 1720 167 0 43 chr12 24476468 24476792 -119805697 + AluJo SINE Alu 1 310 -2 277 331 50 44 chr12 24477781 24477962 -119804527 - L2 LINE L2 -508 2806 2625 21 0 0 0 chr12 24478497 24478518 -119803971 + AT_rich Low_complexity Low_complexity 1 21 0 273 260 13 26 chr12 24478536 24478613 -119803876 - MIR SINE MIR -56 152 77 23 33 0 0 chr12 24478806 24478836 -119803653 + AT_rich Low_complexity Low_complexity 1 30 0 320 343 114 0 chr12 24482807 24482947 -119799542 - L2 LINE L2 -3 3269 3114 267 340 47 52 chr12 24484443 24484634 -119797855 - MER91A DNA MER1_type -4 192 3 359 314 149 21 chr12 24484635 24484823 -119797666 - MIR SINE MIR -34 228 17 21 71 0 0 chr12 24484864 24484906 -119797583 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr12 24486371 24486399 -119796090 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr12 24488875 24488912 -119793577 + AT_rich Low_complexity Low_complexity 1 37 0 1335 110 0 0 chr12 24490766 24490939 -119791550 - AluSg/x SINE Alu -11 299 127 349 342 97 0 chr12 24491273 24491428 -119791061 - L3 LINE CR1 -73 1504 1335 249 232 132 114 chr12 24492118 24492338 -119790151 + MLT1H LTR MaLR 97 320 -229 247 241 23 35 chr12 24492391 24492478 -119790011 + MLT1H LTR MaLR 464 549 0 2447 64 0 6 chr12 24492576 24492889 -119789600 + AluY SINE Alu 1 311 0 672 272 75 36 chr12 24493069 24493276 -119789213 - L1ME LINE L1 -509 5655 5421 2312 101 0 0 chr12 24493276 24493582 -119788907 - AluSq SINE Alu -6 307 2 672 272 75 36 chr12 24493582 24493748 -119788741 - L1ME LINE L1 -743 5421 5263 651 313 54 20 chr12 24493880 24494289 -119788200 - L1ME LINE L1 -1050 5096 4674 252 238 60 0 chr12 24494392 24494427 -119788062 - HERVS71 LTR ERV1 -8436 542 511 351 0 0 0 chr12 24494427 24494466 -119788023 + (CA)n Simple_repeat Simple_repeat 2 40 0 252 238 60 0 chr12 24494466 24494514 -119787975 - HERVS71 LTR ERV1 -8467 511 454 387 0 0 0 chr12 24494757 24494800 -119787689 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 2312 124 13 24 chr12 24494959 24495338 -119787151 + THE1C LTR MaLR 1 375 0 1097 94 0 0 chr12 24495461 24495610 -119786879 - L1PA7 LINE L1 -7 6147 5999 2235 202 20 22 chr12 24495620 24496124 -119786365 - L1MB4 LINE L1 -1 6179 5677 1998 214 36 22 chr12 24496140 24496952 -119785537 - L1M4 LINE L1 -453 5731 4909 910 299 100 27 chr12 24498601 24499002 -119783487 - LTR16A LTR ERVL 0 450 21 414 274 52 30 chr12 24499183 24499318 -119783171 + MIR3 SINE MIR 61 198 -10 2030 301 120 34 chr12 24499402 24500943 -119781546 + L2 LINE L2 1580 3313 0 1520 183 0 8 chr12 24502691 24502954 -119779535 - AluJo SINE Alu -13 299 39 21 0 0 0 chr12 24503394 24503415 -119779074 + AT_rich Low_complexity Low_complexity 1 21 0 2069 125 0 0 chr12 24504595 24504876 -119777613 + AluSx SINE Alu 1 281 -31 207 0 0 0 chr12 24504877 24504900 -119777589 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 709 242 29 46 chr12 24505309 24505615 -119776874 + L1M4 LINE L1 5041 5341 -805 1944 120 3 3 chr12 24505845 24506178 -119776311 + AluSx SINE Alu 1 333 0 195 316 82 10 chr12 24506246 24506344 -119776145 + L3b LINE CR1 1286 1390 -193 189 0 0 0 chr12 24506873 24506894 -119775595 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 282 222 48 0 chr12 24509314 24509377 -119773112 - MSTD LTR MaLR -330 66 1 2118 105 0 49 chr12 24509940 24510265 -119772224 + AluY SINE Alu 1 309 -2 999 178 47 19 chr12 24510320 24510533 -119771956 - MER20 DNA MER1_type 0 219 1 202 368 63 17 chr12 24511074 24511248 -119771241 - L3 LINE CR1 -297 1280 1099 894 280 0 9 chr12 24511561 24511786 -119770703 + MER58A DNA MER1_type 1 223 -1 1856 137 7 36 chr12 24511859 24512166 -119770323 - AluJb SINE Alu -4 308 11 1374 212 85 40 chr12 24512317 24512845 -119769644 - MER20B DNA MER1_type 0 783 232 21 57 0 0 chr12 24512938 24512973 -119769516 + AT_rich Low_complexity Low_complexity 1 35 0 336 255 85 26 chr12 24513483 24513636 -119768853 + HAL1 LINE L1 837 998 -1509 1586 200 10 0 chr12 24513639 24513939 -119768550 + AluJb SINE Alu 10 312 0 1293 199 33 25 chr12 24513995 24514271 -119768218 + AluJo SINE Alu 5 282 -30 367 306 28 14 chr12 24514652 24514796 -119767693 + HAL1 LINE L1 1567 1712 -795 325 263 0 129 chr12 24515127 24515298 -119767191 + HAL1b LINE L1 721 869 -479 1055 201 122 72 chr12 24515538 24516021 -119766468 - Charlie4a DNA MER1_type -1 507 1 5871 146 11 25 chr12 24516316 24517109 -119765380 + L1MA7 LINE L1 5157 5932 -359 1838 131 4 0 chr12 24517109 24517384 -119765105 + AluSx SINE Alu 37 312 0 5871 146 11 25 chr12 24517384 24517738 -119764751 + L1MA7 LINE L1 5932 6290 -1 22 0 0 0 chr12 24518938 24518960 -119763529 + AT_rich Low_complexity Low_complexity 1 22 0 2381 229 52 21 chr12 24519014 24519668 -119762821 - L1ME3A LINE L1 -1 6169 5496 5200 130 16 38 chr12 24520590 24520942 -119761547 + HSMAR2 DNA Mariner 8 366 -936 2090 128 3 0 chr12 24520942 24521246 -119761243 + AluSg SINE Alu 1 305 -5 5200 130 16 38 chr12 24521246 24521784 -119760705 + HSMAR2 DNA Mariner 366 878 -424 28 29 0 0 chr12 24522005 24522040 -119760449 + AT_rich Low_complexity Low_complexity 1 35 0 225 94 0 0 chr12 24523898 24523930 -119758559 + (A)n Simple_repeat Simple_repeat 1 32 0 542 313 86 73 chr12 24525152 24525957 -119756532 + L2 LINE L2 1811 2625 -689 1823 155 0 11 chr12 24526442 24526766 -119755723 + AluJb SINE Alu 2 322 0 24 53 0 0 chr12 24577690 24577728 -119704761 + AT_rich Low_complexity Low_complexity 1 38 0 3990 243 19 12 chr12 24577781 24578897 -119703592 + L1MB7 LINE L1 3777 4899 -1247 1571 257 58 93 chr12 24578927 24579085 -119703404 + MER21B LTR ERV1 21 183 -680 2347 63 0 3 chr12 24579085 24579386 -119703103 + AluY SINE Alu 1 300 -11 1571 257 58 93 chr12 24579386 24579527 -119702962 + MER21B LTR ERV1 183 327 -536 1872 135 0 17 chr12 24579527 24579816 -119702673 + AluSx SINE Alu 4 287 -25 1571 257 58 93 chr12 24579816 24580259 -119702230 + MER21B LTR ERV1 327 738 -125 3791 201 36 19 chr12 24580288 24581550 -119700939 + L1MB7 LINE L1 4901 6184 0 1385 176 14 11 chr12 24582059 24582343 -119700146 + L1MA3 LINE L1 6020 6304 -1 276 283 156 15 chr12 24582748 24582889 -119699600 + MIR SINE MIR 3 157 -51 391 306 181 10 chr12 24583791 24583990 -119698499 - MIR SINE MIR -10 252 20 376 308 0 0 chr12 24584235 24584326 -119698163 + L2 LINE L2 3223 3313 0 782 298 180 6 chr12 24584456 24584989 -119697500 - L2 LINE L2 0 3313 2692 313 299 21 0 chr12 24585059 24585156 -119697333 - MER20B DNA MER1_type -640 143 45 707 284 167 13 chr12 24585158 24585457 -119697032 - L2 LINE L2 -631 2683 2339 2054 127 0 0 chr12 24586274 24586580 -119695909 - AluSx SINE Alu 0 306 1 315 49 0 0 chr12 24586658 24586699 -119695790 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 258 81 0 0 chr12 24588458 24588495 -119693994 + (TG)n Simple_repeat Simple_repeat 2 38 0 246 285 124 58 chr12 24591544 24591681 -119690808 + MIR SINE MIR 67 212 -50 425 329 50 43 chr12 24592569 24592849 -119689640 + MER102b DNA MER1_type 48 329 -12 207 0 0 0 chr12 24594242 24594265 -119688224 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 678 210 65 52 chr12 24594270 24594518 -119687971 + L1MC4a LINE L1 5821 6071 -1737 231 88 0 0 chr12 24596157 24596191 -119686298 + (CA)n Simple_repeat Simple_repeat 1 34 0 207 100 0 0 chr12 24596375 24596405 -119686084 + (A)n Simple_repeat Simple_repeat 1 30 0 1853 170 6 10 chr12 24596911 24597259 -119685230 - AluJo SINE Alu 0 347 1 1982 92 4 22 chr12 24597619 24597891 -119684598 - AluSx SINE Alu -45 267 1 924 163 22 70 chr12 24597991 24598218 -119684271 + MER20 DNA MER1_type 4 219 0 22 0 0 0 chr12 24598480 24598502 -119683987 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 24598990 24599012 -119683477 + AT_rich Low_complexity Low_complexity 1 22 0 2045 95 0 32 chr12 24599116 24599400 -119683089 + AluY SINE Alu 1 275 -36 1431 202 0 18 chr12 24601857 24602129 -119680360 - AluJb SINE Alu -45 267 1 22 0 0 0 chr12 24605423 24605445 -119677044 + AT_rich Low_complexity Low_complexity 1 22 0 718 268 62 68 chr12 24606075 24606444 -119676045 + L1ME LINE L1 5398 5764 -357 26 30 0 0 chr12 24606575 24606608 -119675881 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr12 24607196 24607228 -119675261 + AT_rich Low_complexity Low_complexity 1 32 0 186 43 0 0 chr12 24607520 24607543 -119674946 + (A)n Simple_repeat Simple_repeat 1 23 0 319 307 0 0 chr12 24608086 24608174 -119674315 + MIR SINE MIR 175 262 0 1887 115 31 0 chr12 24608196 24608457 -119674032 - AluSq SINE Alu -44 269 1 444 257 62 110 chr12 24608503 24608708 -119673781 + L2 LINE L2 3036 3224 -89 360 0 0 0 chr12 24608708 24608748 -119673741 + (TG)n Simple_repeat Simple_repeat 1 40 0 444 257 62 110 chr12 24608748 24608834 -119673655 + L2 LINE L2 3224 3313 0 372 299 41 117 chr12 24610572 24611034 -119671455 - L2 LINE L2 0 3272 2846 2222 110 0 10 chr12 24611117 24611425 -119671064 - AluSx SINE Alu -7 305 1 1791 139 82 4 chr12 24611875 24612156 -119670333 - AluSx SINE Alu -9 303 1 2390 101 0 0 chr12 24615036 24615342 -119667147 - AluSq SINE Alu -7 306 1 23 0 0 0 chr12 24615344 24615367 -119667122 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 24615416 24615437 -119667052 + AT_rich Low_complexity Low_complexity 1 21 0 217 211 14 56 chr12 24616555 24616626 -119665863 + A-rich Low_complexity Low_complexity 5 72 0 624 228 48 24 chr12 24617367 24617534 -119664955 + MIR SINE MIR 90 260 -2 1794 169 33 28 chr12 24617799 24618161 -119664328 - MER47A DNA MER2_type 0 366 3 180 0 0 0 chr12 24618189 24618209 -119664280 + (TA)n Simple_repeat Simple_repeat 2 21 0 389 234 138 7 chr12 24618572 24618717 -119663772 - MER106B DNA MER1_type 0 1059 896 214 250 18 0 chr12 24620088 24620144 -119662345 + GA-rich Low_complexity Low_complexity 3 59 0 2193 123 0 3 chr12 24620928 24621238 -119661251 - AluSg SINE Alu -1 309 1 2140 92 7 3 chr12 24621364 24621648 -119660841 + AluSc SINE Alu 1 285 -24 243 0 0 0 chr12 24621755 24621782 -119660707 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 553 259 168 18 chr12 24622229 24622449 -119660040 - MIR SINE MIR -3 259 7 243 161 0 0 chr12 24622673 24622729 -119659760 + GA-rich Low_complexity Low_complexity 2 57 0 512 344 40 32 chr12 24623078 24623331 -119659158 + L3 LINE CR1 1319 1573 -4 475 208 0 20 chr12 24623845 24623946 -119658543 + MIR SINE MIR 164 262 0 435 328 65 11 chr12 24624039 24624225 -119658264 + L3 LINE CR1 1380 1575 -2 552 284 62 58 chr12 24624339 24624582 -119657907 + MIR SINE MIR 18 261 -1 2006 130 3 13 chr12 24626412 24626712 -119655777 + AluSx SINE Alu 1 297 -15 2463 70 0 3 chr12 24626718 24627030 -119655459 + AluY SINE Alu 1 311 0 183 282 17 144 chr12 24628391 24628572 -119653917 + L3 LINE CR1 1339 1496 -81 1580 212 17 7 chr12 24628737 24629034 -119653455 + AluJb SINE Alu 1 300 -12 307 325 135 55 chr12 24629085 24629385 -119653104 - L1ME4a LINE L1 -3 6118 5844 1233 174 150 12 chr12 24629385 24629507 -119652982 - AluJb SINE Alu -14 288 184 459 0 0 0 chr12 24629507 24629558 -119652931 + (TG)n Simple_repeat Simple_repeat 2 52 0 1233 174 150 12 chr12 24629558 24629688 -119652801 - AluJb SINE Alu -118 184 1 307 325 135 55 chr12 24629688 24630097 -119652392 - L1ME4a LINE L1 -277 5844 5352 270 171 86 0 chr12 24630167 24630237 -119652252 + MER116 DNA Mariner 5 80 0 816 161 0 0 chr12 24630584 24630727 -119651762 + FRAM SINE Alu 33 175 -1 264 212 30 0 chr12 24632072 24632138 -119650351 + U3 snRNA snRNA 1 68 -149 1247 186 59 46 chr12 24633152 24633458 -119649031 - AluJo SINE Alu -2 310 1 2257 103 3 0 chr12 24633540 24633831 -119648658 - AluSg1 SINE Alu -17 292 1 723 309 44 25 chr12 24634355 24634763 -119647726 - L1ME LINE L1 -366 5796 5381 2652 288 126 41 chr12 24634993 24635441 -119647048 - L1ME LINE L1 -1025 5121 4713 255 31 0 0 chr12 24635441 24635473 -119647016 + (CA)n Simple_repeat Simple_repeat 1 32 0 2652 288 126 41 chr12 24635473 24636424 -119646065 - L1ME LINE L1 -1433 4713 3844 1842 114 0 82 chr12 24636424 24636740 -119645749 + AluSx SINE Alu 1 290 -22 2652 288 126 41 chr12 24636740 24637959 -119644530 - L1ME LINE L1 -2302 3844 2279 319 344 24 0 chr12 24637970 24638095 -119644394 - MIR SINE MIR -126 136 9 25 31 0 0 chr12 24638656 24638688 -119643801 + AT_rich Low_complexity Low_complexity 1 32 0 363 309 15 100 chr12 24638702 24638961 -119643528 - L1ME4a LINE L1 -73 6048 5812 274 307 20 10 chr12 24639007 24639108 -119643381 - L1ME4a LINE L1 -309 5812 5711 270 209 70 23 chr12 24639119 24639205 -119643284 + MLT1J LTR MaLR 420 509 -2 273 310 20 0 chr12 24639239 24639339 -119643150 - L1ME4a LINE L1 -518 5603 5502 26 30 0 0 chr12 24640574 24640607 -119641882 + AT_rich Low_complexity Low_complexity 1 33 0 499 181 12 0 chr12 24640922 24641082 -119641407 + (TA)n Simple_repeat Simple_repeat 1 162 0 1541 230 7 0 chr12 24641906 24642206 -119640283 + AluJb SINE Alu 1 302 -10 21 0 0 0 chr12 24642522 24642543 -119639946 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr12 24644708 24644733 -119637756 + (A)n Simple_repeat Simple_repeat 1 25 0 1211 7 0 0 chr12 24645698 24645876 -119636613 + L1PA4 LINE L1 6008 6185 0 401 244 161 39 chr12 24646111 24646316 -119636173 - MIR SINE MIR -30 232 3 241 276 0 17 chr12 24646893 24646951 -119635538 - MER91 DNA MER1_type 0 196 140 222 37 0 0 chr12 24647907 24647934 -119634555 + (TG)n Simple_repeat Simple_repeat 2 28 0 503 236 204 44 chr12 24648106 24648317 -119634172 + LTR33A LTR ERVL 226 484 -39 2044 118 0 35 chr12 24648317 24648630 -119633859 + AluSq SINE Alu 1 302 -11 503 236 204 44 chr12 24648630 24648668 -119633821 + LTR33A LTR ERVL 484 515 -8 24 0 0 0 chr12 24648681 24648705 -119633784 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr12 24649355 24649378 -119633111 + AT_rich Low_complexity Low_complexity 1 23 0 410 304 165 41 chr12 24649420 24650003 -119632486 + L3 LINE CR1 670 1324 -253 946 195 0 0 chr12 24650022 24650176 -119632313 - FRAM SINE Alu -22 154 1 272 270 40 0 chr12 24650180 24650254 -119632235 + L3 LINE CR1 1341 1417 -160 251 182 36 0 chr12 24650581 24650636 -119631853 + MLT1E2 LTR MaLR 95 151 -503 1609 268 21 8 chr12 24650709 24651090 -119631399 + MLT1E2 LTR MaLR 219 604 -22 2088 143 0 0 chr12 24651288 24651582 -119630907 + AluSx SINE Alu 2 295 -17 5048 71 9 4 chr12 24651717 24652395 -119630094 - L1PA7 LINE L1 -1 6153 5473 1503 180 17 20 chr12 24652423 24652718 -119629771 + AluJb SINE Alu 5 298 -14 298 169 0 14 chr12 24653149 24653220 -119629269 - L1MA7 LINE L1 -2 6289 6220 327 104 0 0 chr12 24654083 24654131 -119628358 + (CA)n Simple_repeat Simple_repeat 1 48 0 384 258 7 84 chr12 24654434 24654553 -119627936 + MER96 DNA MER1_type? 1 107 -68 2341 66 7 7 chr12 24654553 24654854 -119627635 - AluY SINE Alu -9 302 2 384 258 7 84 chr12 24654854 24654889 -119627600 + MER96 DNA MER1_type? 107 143 -32 2142 107 10 7 chr12 24655092 24655392 -119627097 + AluSq SINE Alu 1 301 -12 267 368 76 14 chr12 24655917 24656061 -119626428 + MIR3 SINE MIR 43 195 -13 250 286 18 62 chr12 24656214 24656326 -119626163 - MIR SINE MIR -1 261 155 1826 132 30 27 chr12 24656336 24656631 -119625858 - AluJb SINE Alu 0 312 17 506 149 23 0 chr12 24656872 24656959 -119625530 - MIR SINE MIR -102 160 72 209 274 0 16 chr12 24657232 24657294 -119625195 - MIR SINE MIR -132 76 16 480 249 225 0 chr12 24657328 24657497 -119624992 + MIR SINE MIR 56 262 0 196 335 63 0 chr12 24657742 24657830 -119624659 + MIR SINE MIR 37 130 -78 249 248 34 151 chr12 24659259 24659497 -119622992 + MLT1K LTR MaLR 379 588 0 1184 161 38 0 chr12 24662254 24662465 -119620024 - MER20 DNA MER1_type 0 219 1 225 0 0 0 chr12 24662948 24662973 -119619516 + (A)n Simple_repeat Simple_repeat 1 25 0 3298 184 40 7 chr12 24663672 24664344 -119618145 + MER50 LTR ERV1 29 722 -12 255 269 30 0 chr12 24664381 24664448 -119618041 + L2 LINE L2 3186 3254 -18 1574 199 78 49 chr12 24666803 24667229 -119615260 + MER39 LTR ERV1 270 707 0 182 328 17 17 chr12 24667898 24667956 -119614533 + L3b LINE CR1 1296 1353 -230 300 345 9 9 chr12 24668025 24668135 -119614354 + L2 LINE L2 2715 2824 -490 561 232 44 61 chr12 24668213 24668394 -119614095 + L2 LINE L2 3136 3313 0 223 357 104 13 chr12 24668875 24669029 -119613460 + L2 LINE L2 2908 3075 -197 1702 172 7 10 chr12 24669032 24669322 -119613167 + AluJo SINE Alu 13 301 -11 1187 258 53 45 chr12 24669537 24669986 -119612503 + L2 LINE L2 2258 2710 -604 1039 17 0 0 chr12 24669988 24670105 -119612384 - L1PA4 LINE L1 -262 5893 5777 1598 55 0 0 chr12 24670105 24670301 -119612188 + L1PA4 LINE L1 5955 6153 -2 764 224 17 6 chr12 24670359 24670538 -119611951 + L2 LINE L2 2728 2908 -406 322 333 0 10 chr12 24670584 24670683 -119611806 + L2 LINE L2 3205 3302 -11 233 384 58 0 chr12 24670706 24670792 -119611697 + L2 LINE L2 3182 3272 0 21 36 0 0 chr12 24671424 24671452 -119611037 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr12 24672332 24672352 -119610137 + (GGAA)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr12 24672493 24672521 -119609968 + AT_rich Low_complexity Low_complexity 1 28 0 2028 113 20 3 chr12 24673702 24674004 -119608485 + AluSx SINE Alu 1 307 -5 815 275 133 17 chr12 24674008 24674368 -119608121 + MLT1J LTR MaLR 107 508 -3 467 226 186 0 chr12 24674408 24674532 -119607957 + MIR SINE MIR 116 262 0 500 374 59 7 chr12 24675190 24675476 -119607013 + L2 LINE L2 2440 2740 -574 254 322 41 112 chr12 24675620 24675862 -119606627 + L2 LINE L2 3001 3225 -47 2411 63 0 0 chr12 24676356 24676670 -119605819 + AluY SINE Alu 3 316 0 601 261 59 0 chr12 24678803 24678956 -119603533 + MER5A DNA MER1_type 7 168 -21 240 111 0 0 chr12 24679067 24679103 -119603386 + (TA)n Simple_repeat Simple_repeat 1 36 0 803 282 24 8 chr12 24680380 24680632 -119601857 + MIR SINE MIR 5 260 -2 211 259 0 52 chr12 24680826 24680884 -119601605 + MIR SINE MIR 57 111 -151 23 54 0 0 chr12 24680897 24680934 -119601555 + AT_rich Low_complexity Low_complexity 1 37 0 207 327 33 65 chr12 24681354 24681507 -119600982 + L3b LINE CR1 1269 1416 -167 269 306 81 46 chr12 24681757 24681930 -119600559 + MIR SINE MIR 58 236 -26 199 167 71 0 chr12 24682276 24682318 -119600171 + L2 LINE L2 3263 3307 -6 609 248 29 152 chr12 24682336 24682816 -119599673 + L2 LINE L2 2893 3313 0 2054 134 3 25 chr12 24683170 24683350 -119599139 - AluSq SINE Alu 0 313 142 1913 85 0 33 chr12 24683350 24683620 -119598869 - AluY SINE Alu -11 300 40 2054 134 3 25 chr12 24683620 24683759 -119598730 - AluSq SINE Alu -171 142 1 1782 145 70 25 chr12 24684961 24685320 -119597169 - THE1C LTR MaLR 0 375 1 2253 113 0 0 chr12 24685508 24685808 -119596681 + AluSx SINE Alu 1 300 -12 319 267 92 33 chr12 24686379 24686499 -119595990 + L2 LINE L2 3186 3312 -1 431 283 105 77 chr12 24686541 24686894 -119595595 + HAL1 LINE L1 25 387 -2120 254 355 54 16 chr12 24687005 24687191 -119595298 + HAL1 LINE L1 705 897 -1610 2225 104 7 13 chr12 24687335 24687643 -119594846 + AluSc SINE Alu 1 306 -3 856 278 50 43 chr12 24687899 24688316 -119594173 + HAL1 LINE L1 1364 1783 -724 217 44 0 67 chr12 24688318 24688363 -119594126 + (TAAAAA)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr12 24689267 24689288 -119593201 + AT_rich Low_complexity Low_complexity 1 21 0 342 293 29 73 chr12 24689291 24689564 -119592925 + L1ME4a LINE L1 3887 4147 -1999 287 263 72 20 chr12 24690148 24690300 -119592189 + L1ME4a LINE L1 5317 5476 -2332 444 281 101 46 chr12 24690360 24690688 -119591801 + L1ME4a LINE L1 5588 5933 -188 584 230 161 22 chr12 24691152 24691382 -119591107 - MIR SINE MIR 0 262 1 2170 97 4 0 chr12 24691842 24692160 -119590329 - AluY SINE Alu 0 319 1 2182 114 3 19 chr12 24693102 24693409 -119589080 - AluSx SINE Alu -10 302 1 25 51 0 0 chr12 24693760 24693799 -119588690 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr12 24693950 24693973 -119588516 + AT_rich Low_complexity Low_complexity 1 23 0 2434 121 3 22 chr12 24694359 24694730 -119587759 + THE1B LTR MaLR 1 364 0 443 241 57 35 chr12 24694746 24694887 -119587602 - L2 LINE L2 -2 3311 3168 210 91 0 0 chr12 24694897 24694930 -119587559 + (TC)n Simple_repeat Simple_repeat 2 34 0 360 0 0 0 chr12 24694932 24694972 -119587517 + (CA)n Simple_repeat Simple_repeat 1 40 0 377 347 163 29 chr12 24695128 24695503 -119586986 - L2 LINE L2 -340 2974 2550 354 289 108 31 chr12 24695529 24695954 -119586535 + LTR16A LTR ERVL 1 450 0 1806 161 11 3 chr12 24696962 24697247 -119585242 + AluJb SINE Alu 1 287 -25 466 279 80 80 chr12 24697343 24697720 -119584769 + LTR33A LTR ERVL 8 384 -139 557 329 108 38 chr12 24698008 24698562 -119583927 + L2 LINE L2 2135 2727 -587 273 194 37 19 chr12 24699194 24699302 -119583187 + (TA)n Simple_repeat Simple_repeat 2 111 0 217 311 11 56 chr12 24699396 24699486 -119583003 + L2 LINE L2 3184 3269 -3 2286 110 0 0 chr12 24699770 24700078 -119582411 + AluSc SINE Alu 1 308 -1 2215 114 0 3 chr12 24702222 24702519 -119579970 - AluSg SINE Alu -14 296 1 2082 36 0 0 chr12 24702558 24702805 -119579684 + L1PA5 LINE L1 5904 6150 -4 957 198 116 35 chr12 24702836 24703154 -119579335 - MER2 DNA MER2_type 0 345 2 881 130 31 6 chr12 24703158 24703319 -119579170 - L1MA8 LINE L1 -71 6220 6056 189 0 0 0 chr12 24703817 24703838 -119578651 + (A)n Simple_repeat Simple_repeat 1 21 0 2066 120 0 3 chr12 24704132 24704451 -119578038 - AluSx SINE Alu 0 318 1 2675 92 17 0 chr12 24704466 24704824 -119577665 + THE1B LTR MaLR 1 364 0 3489 181 7 14 chr12 24705039 24705728 -119576761 - L1MB2 LINE L1 -10 6161 5478 231 200 0 0 chr12 24706088 24706143 -119576346 - Alu SINE Alu -1 301 247 1661 157 26 0 chr12 24706144 24706411 -119576078 - AluJb SINE Alu -38 274 1 1694 173 0 37 chr12 24706538 24706856 -119575633 + AluSx SINE Alu 1 307 0 24 32 0 0 chr12 24706987 24707018 -119575471 + AT_rich Low_complexity Low_complexity 1 31 0 240 243 108 14 chr12 24707065 24707139 -119575350 + L2 LINE L2 3184 3264 -8 237 163 23 0 chr12 24708494 24708537 -119573952 - MER115 DNA AcHobo -9 684 641 599 310 20 40 chr12 24708556 24708756 -119573733 - MER115 DNA AcHobo -358 335 140 2296 81 0 10 chr12 24709410 24709706 -119572783 - AluSg SINE Alu -17 293 1 331 315 133 47 chr12 24709712 24710448 -119572041 - L2 LINE L2 -2 3311 2510 187 150 25 50 chr12 24710974 24711014 -119571475 + MER5A DNA MER1_type 14 52 -137 1084 60 0 0 chr12 24711062 24711195 -119571294 - AluY SINE Alu 0 311 179 193 345 42 8 chr12 24711218 24711337 -119571152 - MER5B DNA MER1_type -55 123 1 234 250 0 0 chr12 24712183 24712231 -119570258 + CT-rich Low_complexity Low_complexity 2 49 0 192 385 53 27 chr12 24713073 24713260 -119569229 - L2 LINE L2 -3 3269 3078 1642 171 10 10 chr12 24713328 24713638 -119568851 + AluSx SINE Alu 1 310 -2 2041 0 0 9 chr12 24713676 24713904 -119568585 - AluYa5 SINE Alu -85 226 1 1554 232 68 24 chr12 24713904 24714313 -119568176 + LTR40a LTR ERVL 93 519 0 665 322 24 5 chr12 24714518 24714729 -119567760 - MIR SINE MIR 0 262 48 268 329 70 80 chr12 24714804 24715090 -119567399 - L2 LINE L2 -69 3203 2921 23 0 0 0 chr12 24715246 24715269 -119567220 + AT_rich Low_complexity Low_complexity 1 23 0 250 232 0 0 chr12 24716145 24716201 -119566288 - L2 LINE L2 -4 3268 3213 266 257 54 0 chr12 24716656 24716730 -119565759 - MER69 DNA AcHobo -1 2525 2448 555 182 125 26 chr12 24716768 24716960 -119565529 - MER69 DNA AcHobo -317 2209 1999 * 760 236 143 117 chr12 24716946 24717500 -119564989 - MER69 DNA AcHobo -1958 568 1 377 281 13 7 chr12 24719208 24719361 -119563128 + (TA)n Simple_repeat Simple_repeat 2 155 0 1798 157 17 17 chr12 24719734 24720033 -119562456 - AluSx SINE Alu -13 299 1 306 67 0 0 chr12 24721091 24721136 -119561353 + (CA)n Simple_repeat Simple_repeat 2 46 0 1826 147 24 10 chr12 24722245 24722537 -119559952 - AluJb SINE Alu -16 296 1 267 299 299 6 chr12 24722781 24722948 -119559541 - MIR SINE MIR -17 245 30 23 0 0 0 chr12 24726122 24726145 -119556344 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr12 24727369 24727397 -119555092 + AT_rich Low_complexity Low_complexity 1 28 0 455 274 0 0 chr12 24727879 24727992 -119554497 - MLT1E LTR MaLR -456 137 25 203 307 67 53 chr12 24728836 24729061 -119553428 + L2 LINE L2 2302 2529 -785 2112 114 3 0 chr12 24729777 24730067 -119552422 - AluSx SINE Alu -21 291 1 608 177 31 31 chr12 24731163 24731293 -119551196 + AluJo SINE Alu 42 171 -141 298 328 45 22 chr12 24731329 24731463 -119551026 - MIR SINE MIR -42 220 84 181 229 0 0 chr12 24731574 24731609 -119550880 + L2 LINE L2 3171 3205 -67 612 0 0 0 chr12 24731616 24731684 -119550805 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 189 74 0 0 chr12 24731688 24731715 -119550774 + (CCCA)n Simple_repeat Simple_repeat 1 27 0 742 125 8 0 chr12 24731722 24731842 -119550647 + MER50 LTR ERV1 485 605 -129 267 122 0 0 chr12 24731928 24731977 -119550512 + (GGAA)n Simple_repeat Simple_repeat 1 49 0 234 250 0 0 chr12 24732370 24732418 -119550071 + CT-rich Low_complexity Low_complexity 2 49 0 196 316 75 48 chr12 24733259 24733446 -119549043 - L2 LINE L2 -3 3269 3078 2061 116 10 10 chr12 24733514 24733824 -119548665 + AluSx SINE Alu 1 310 -2 453 298 81 19 chr12 24733891 24734052 -119548437 + L2 LINE L2 3143 3313 0 1177 75 0 0 chr12 24734438 24734584 -119547905 + AluY SINE Alu 152 297 -14 315 290 55 41 chr12 24734805 24734950 -119547539 - MIR SINE MIR 0 262 116 207 308 0 26 chr12 24735942 24736020 -119546469 + GA-rich Low_complexity Low_complexity 2 77 0 867 232 27 13 chr12 24737277 24737501 -119544988 + MIR SINE MIR 24 250 -12 261 83 0 0 chr12 24737567 24737603 -119544886 + (TG)n Simple_repeat Simple_repeat 1 36 0 30 59 0 0 chr12 24738984 24739035 -119543454 + AT_rich Low_complexity Low_complexity 1 51 0 369 0 0 0 chr12 24740464 24740505 -119541984 + (TA)n Simple_repeat Simple_repeat 1 41 0 245 307 108 28 chr12 24742347 24742523 -119539966 + MLT1K LTR MaLR 259 448 -140 209 265 29 15 chr12 24742853 24742921 -119539568 + GA-rich Low_complexity Low_complexity 1 69 0 311 325 32 32 chr12 24744521 24744647 -119537842 + L2 LINE L2 3144 3269 -3 439 340 108 10 chr12 24744876 24745079 -119537410 + MIR SINE MIR 13 235 -27 1446 215 47 85 chr12 24745196 24745690 -119536799 + MER77 LTR ERV1 123 597 -8 2312 79 0 10 chr12 24746152 24746455 -119536034 + AluY SINE Alu 1 300 -11 230 305 0 0 chr12 24746677 24746736 -119535753 - L2 LINE L2 -999 2315 2257 672 162 17 0 chr12 24746849 24746966 -119535523 - BC200 scRNA scRNA -81 119 1 1507 193 30 3 chr12 24747146 24747441 -119535048 + Tigger7 DNA MER2_type 6 308 -425 1983 128 6 64 chr12 24747443 24747581 -119534908 - MER1B DNA MER1_type -2373 339 195 2338 131 27 5 chr12 24747581 24747948 -119534541 + THE1C LTR MaLR 1 375 0 1983 128 6 64 chr12 24747948 24748169 -119534320 - MER1B DNA MER1_type -2517 195 1 2309 166 24 15 chr12 24748169 24748633 -119533856 + Tigger7 DNA MER2_type 303 770 -1717 668 175 0 0 chr12 24748633 24748753 -119533736 + Tigger7 DNA MER2_type 2118 2237 -250 1829 152 38 3 chr12 24749194 24749483 -119533006 + AluJo SINE Alu 5 303 -9 225 186 17 34 chr12 24750416 24750475 -119532014 + (TATG)n Simple_repeat Simple_repeat 2 59 0 2422 50 0 60 chr12 24750579 24750896 -119531593 - AluY SINE Alu -13 298 1 667 235 96 3 chr12 24750905 24751084 -119531405 - MIR SINE MIR -10 252 62 1701 111 9 0 chr12 24751196 24751472 -119531017 - L1P5 LINE L1 -596 5560 5281 447 354 180 5 chr12 24751615 24751982 -119530507 - L3 LINE CR1 -899 678 248 957 290 137 32 chr12 24752172 24752982 -119529507 + L2 LINE L2 2405 3313 0 255 204 37 0 chr12 24757450 24757504 -119524985 + CT-rich Low_complexity Low_complexity 2 57 0 878 211 0 29 chr12 24757634 24757858 -119524631 + FRAM SINE Alu 1 83 0 224 281 0 18 chr12 24757913 24757970 -119524519 + CT-rich Low_complexity Low_complexity 1 56 0 223 314 76 34 chr12 24758399 24758517 -119523972 + MIR SINE MIR 14 136 -126 * 285 314 89 40 chr12 24758505 24758629 -119523860 + L2 LINE L2 3143 3272 0 290 189 207 18 chr12 24758630 24758741 -119523748 + MIR SINE MIR 130 261 -1 571 327 70 0 chr12 24758786 24758985 -119523504 + MIR SINE MIR 33 245 -17 1124 143 30 0 chr12 24759173 24759341 -119523148 + AluJb SINE Alu 129 301 -11 21 0 0 0 chr12 24759361 24759382 -119523107 + AT_rich Low_complexity Low_complexity 1 21 0 947 227 14 5 chr12 24759412 24759619 -119522870 + MER6B DNA MER2_type 1 209 -1 209 108 27 0 chr12 24759681 24759718 -119522771 + (CAT)n Simple_repeat Simple_repeat 2 39 0 1348 89 139 0 chr12 24760667 24760869 -119521620 - MER30 DNA MER1_type 0 230 1 507 281 56 0 chr12 24761653 24761831 -119520658 + LTR33 LTR ERVL 27 214 -307 236 291 0 97 chr12 24761893 24761996 -119520493 + LTR33 LTR ERVL 330 422 -99 1654 173 22 28 chr12 24761996 24762360 -119520129 - L1MB8 LINE L1 -6 6172 5811 3798 20 0 2 chr12 24762360 24762794 -119519695 - L1PA3 LINE L1 -3 6152 5713 934 73 102 0 chr12 24762815 24762952 -119519537 - L1PA11 LINE L1 -3 6171 6021 1980 151 34 8 chr12 24762954 24763339 -119519150 - L1MB8 LINE L1 -359 5825 5431 253 262 39 19 chr12 24763340 24763443 -119519046 + LTR33 LTR ERVL 409 513 -8 476 319 134 23 chr12 24763464 24763771 -119518718 - L3 LINE CR1 -321 1256 916 3258 120 39 32 chr12 24763835 24764394 -119518095 - L1PB4 LINE L1 -8 6148 5586 507 216 8 8 chr12 24764495 24764620 -119517869 - AluSc SINE Alu -184 125 1 1989 220 102 74 chr12 24764621 24764691 -119517798 - MER69B DNA AcHobo -1608 918 851 1514 188 14 14 chr12 24764691 24764973 -119517516 + AluJb SINE Alu 1 282 -30 1989 220 102 74 chr12 24764973 24765769 -119516720 - MER69B DNA AcHobo -1675 851 28 1019 197 131 60 chr12 24767362 24767541 -119514948 + MER58D DNA MER1_type 6 171 -2249 2238 113 0 0 chr12 24767541 24767841 -119514648 + AluSg SINE Alu 1 300 -10 1019 197 131 60 chr12 24767841 24767897 -119514592 + MER58D DNA MER1_type 171 222 -2198 1842 174 7 0 chr12 24767897 24768207 -119514282 + AluJo SINE Alu 1 312 0 1019 197 131 60 chr12 24768207 24768321 -119514168 + MER58D DNA MER1_type 222 381 -5 404 336 98 15 chr12 24768567 24768832 -119513657 + L1ME LINE L1 5436 5722 -399 382 205 12 0 chr12 24769024 24769107 -119513382 - MER69 DNA AcHobo -8 2518 2435 * 435 325 37 29 chr12 24769102 24769345 -119513144 - MER69 DNA AcHobo -2279 247 3 300 252 165 9 chr12 24769795 24769910 -119512579 + L2 LINE L2 3180 3312 -1 1843 163 125 24 chr12 24771229 24771653 -119510836 + MLT1C LTR MaLR 1 467 0 688 311 85 11 chr12 24774399 24774669 -119507820 - L2 LINE L2 -188 3125 2836 5779 208 84 58 chr12 24774783 24775265 -119507224 - L1MD1 LINE L1 -6 6236 5768 4952 75 1 18 chr12 24775265 24775936 -119506553 + L1PA8A LINE L1 5462 6121 -10 5779 208 84 58 chr12 24775936 24776472 -119506017 - L1MD1 LINE L1 -474 5768 5247 1951 163 0 0 chr12 24776472 24776767 -119505722 - AluJb SINE Alu -17 295 1 5779 208 84 58 chr12 24776767 24779245 -119503244 - L1MD1 LINE L1 -995 5247 2641 2200 50 90 4 chr12 24779245 24779524 -119502965 - AluY SINE Alu -8 303 1 5779 208 84 58 chr12 24779524 24779597 -119502892 - L1MD1 LINE L1 -3601 2641 2571 275 296 0 11 chr12 24783433 24783521 -119498968 + MIR SINE MIR 176 262 0 328 106 0 0 chr12 24784410 24784457 -119498032 + MLT1L LTR MaLR 148 194 -421 1714 145 3 61 chr12 24785230 24785541 -119496948 - AluSx SINE Alu -19 293 1 2076 220 76 53 chr12 24786301 24787159 -119495330 + L1MC5 LINE L1 6708 7531 -430 239 274 60 36 chr12 24787274 24787442 -119495047 + L1ME3A LINE L1 5999 6170 0 254 264 70 10 chr12 24788401 24788551 -119493938 + MLT1I LTR MaLR 67 221 -188 1902 179 7 0 chr12 24788832 24789140 -119493349 + AluJo SINE Alu 3 312 0 825 179 0 7 chr12 24792159 24792331 -119490158 + AluSg/x SINE Alu 139 309 0 1787 51 34 17 chr12 24792331 24792565 -119489924 + L1PA6 LINE L1 5904 6141 -13 191 296 0 0 chr12 24793379 24793433 -119489056 + MIR SINE MIR 203 256 -6 851 256 36 11 chr12 24794501 24794775 -119487714 + L1MC3 LINE L1 7494 7774 -11 294 379 121 7 chr12 24794815 24794947 -119487542 + L3 LINE CR1 992 1108 -469 1808 123 84 21 chr12 24794947 24795231 -119487258 + AluSx SINE Alu 1 302 -10 294 379 121 7 chr12 24795231 24795370 -119487119 + L3 LINE CR1 1108 1294 -283 1134 298 187 6 chr12 24795817 24796706 -119485783 + L2 LINE L2 2230 3309 -4 309 185 82 96 chr12 24797222 24797368 -119485121 - MER103 DNA DNA -20 146 3 5145 119 39 17 chr12 24797384 24797509 -119484980 - L1MA3 LINE L1 0 6305 6184 392 0 0 20 chr12 24797509 24797558 -119484931 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 2005 125 14 4 chr12 24797558 24797837 -119484652 - AluSx SINE Alu -30 282 1 5145 119 39 17 chr12 24797837 24798615 -119483874 - L1MA3 LINE L1 -120 6185 5381 441 317 16 48 chr12 24798686 24798872 -119483617 + MIR SINE MIR 13 192 -70 202 284 102 11 chr12 24799493 24799581 -119482908 + L3 LINE CR1 1475 1570 -7 22 0 0 0 chr12 24800086 24800108 -119482381 + AT_rich Low_complexity Low_complexity 1 22 0 417 286 36 41 chr12 24802870 24803066 -119479423 + LTR16A LTR ERVL 144 338 -112 283 335 55 37 chr12 24803177 24803341 -119479148 - MIR3 SINE MIR -26 182 16 295 333 44 0 chr12 24803568 24803682 -119478807 - MIR SINE MIR -42 220 102 419 170 21 0 chr12 24805028 24805122 -119477367 - MER53 DNA DNA 0 189 94 278 230 264 0 chr12 24805126 24805213 -119477276 - MER5A DNA MER1_type -21 168 59 614 233 28 40 chr12 24805488 24805664 -119476825 + MER5B DNA MER1_type 1 174 -4 614 245 148 0 chr12 24805683 24805838 -119476651 + MER5A DNA MER1_type 11 188 -1 27 0 0 26 chr12 24808583 24808603 -119473886 + AT_rich Low_complexity Low_complexity 1 21 -16 681 164 112 0 chr12 24808603 24808719 -119473770 + FLAM_A SINE Alu 5 133 0 27 0 0 26 chr12 24808719 24808736 -119473753 + AT_rich Low_complexity Low_complexity 21 37 0 298 245 41 0 chr12 24808852 24808954 -119473535 + MIR SINE MIR 34 120 -142 2217 82 0 0 chr12 24809012 24809342 -119473147 + AluY SINE Alu 1 330 0 390 42 0 0 chr12 24809580 24809628 -119472861 + (CA)n Simple_repeat Simple_repeat 2 49 0 24 0 0 0 chr12 24810424 24810448 -119472041 + AT_rich Low_complexity Low_complexity 1 24 0 264 343 0 9 chr12 24810829 24810937 -119471552 + MIR3 SINE MIR 97 203 -5 347 333 0 1 chr12 24811113 24811226 -119471263 - MIR SINE MIR -70 138 38 1177 210 10 23 chr12 24811362 24811667 -119470822 - L1MA10 LINE L1 -11 6323 6023 567 292 59 14 chr12 24812149 24812368 -119470121 + MIR SINE MIR 23 251 -11 2189 99 11 0 chr12 24812509 24812792 -119469697 + AluSc SINE Alu 1 286 -23 21 0 0 0 chr12 24813061 24813082 -119469407 + AT_rich Low_complexity Low_complexity 1 21 0 332 348 85 26 chr12 24813845 24814222 -119468267 - L2 LINE L2 -1110 2204 1806 2586 123 44 7 chr12 24814484 24814897 -119467592 + MSTA LTR MaLR 1 428 0 425 298 153 43 chr12 24815044 24815417 -119467072 + MLT1K LTR MaLR 175 588 0 219 180 0 100 chr12 24815522 24815572 -119466917 + L2 LINE L2 3254 3298 -15 14300 128 12 26 chr12 24815685 24817182 -119465307 + Tigger1 DNA MER2_type 6 1456 -962 7109 49 9 0 chr12 24817182 24818416 -119464073 + L1PA7 LINE L1 4876 6152 -2 14300 128 12 26 chr12 24818416 24819366 -119463123 + Tigger1 DNA MER2_type 1456 2418 0 2142 116 0 3 chr12 24819591 24819894 -119462595 + AluY SINE Alu 3 304 -7 226 315 0 0 chr12 24819938 24819992 -119462497 + L2 LINE L2 3218 3271 -1 414 0 0 0 chr12 24820571 24820617 -119461872 + (TG)n Simple_repeat Simple_repeat 1 46 0 993 276 63 72 chr12 24822265 24822843 -119459646 - L2 LINE L2 0 3313 2736 2145 115 7 7 chr12 24822925 24823229 -119459260 - AluSx SINE Alu -8 304 1 306 0 0 0 chr12 24824247 24824281 -119458208 + (TG)n Simple_repeat Simple_repeat 1 34 0 190 200 0 25 chr12 24824299 24824339 -119458150 - MIR SINE MIR -112 150 112 1050 280 55 15 chr12 24824548 24824948 -119457541 + LTR16A LTR ERVL 28 443 -7 196 352 70 28 chr12 24825353 24825495 -119456994 + L3 LINE CR1 190 337 -1240 249 396 63 19 chr12 24825562 24825721 -119456768 + L3 LINE CR1 467 632 -945 1033 308 100 45 chr12 24826037 24826695 -119455794 - L2 LINE L2 -7 3306 2592 2102 196 68 10 chr12 24826844 24827345 -119455144 + L1MC3 LINE L1 6865 7394 -391 1342 187 0 90 chr12 25027475 25027616 -119254873 - AluSx SINE Alu -38 274 173 2394 92 0 0 chr12 25027616 25027922 -119254567 - AluSg SINE Alu -4 306 1 1342 187 0 90 chr12 25027922 25028079 -119254410 - AluSx SINE Alu -139 173 3 534 296 91 0 chr12 25028086 25028262 -119254227 - MIR SINE MIR -66 196 5 468 164 242 55 chr12 25028317 25028445 -119254044 + MSTA LTR MaLR 1 152 -223 621 141 41 16 chr12 25028447 25028568 -119253921 - LTR9 LTR ERV1 -2 610 487 9911 96 56 11 chr12 25028670 25031339 -119251150 - L1PBa LINE L1 -3938 2925 1 2356 109 0 0 chr12 25031632 25031936 -119250553 + AluSx SINE Alu 1 304 -8 1439 192 0 4 chr12 25032036 25032302 -119250187 + AluJo SINE Alu 44 308 -4 278 261 106 0 chr12 25033345 25033506 -119248983 + L1MC4a LINE L1 5198 5375 -771 323 354 148 15 chr12 25033570 25033895 -119248594 + L1MC4a LINE L1 5508 5875 -1933 428 331 176 25 chr12 25034235 25034480 -119248009 + L2 LINE L2 2990 3271 -1 2253 71 0 0 chr12 25035696 25036033 -119246456 - AluY SINE Alu 0 337 1 2298 113 3 0 chr12 25036227 25036538 -119245951 + AluSp SINE Alu 1 312 -1 180 271 180 49 chr12 25036569 25036691 -119245798 - L2 LINE L2 -223 3049 2912 372 294 65 24 chr12 25036863 25037033 -119245456 - L2 LINE L2 -2 3311 3135 785 333 177 13 chr12 25037217 25037766 -119244723 - L2 LINE L2 -417 2897 2259 285 250 0 0 chr12 25037865 25037925 -119244564 - L2 LINE L2 -1072 2242 2183 310 263 80 45 chr12 25038260 25038484 -119244005 - L1M4 LINE L1 -1117 5029 4798 345 307 59 15 chr12 25038755 25038957 -119243532 + L1M4 LINE L1 4569 4779 -1367 24 0 0 0 chr12 25038982 25039006 -119243483 + AT_rich Low_complexity Low_complexity 1 24 0 327 318 139 55 chr12 25039558 25040226 -119242263 + L2 LINE L2 2308 3068 -245 6425 93 13 0 chr12 25040226 25041672 -119240817 + L1PA14 LINE L1 4702 6161 0 327 318 139 55 chr12 25041672 25041941 -119240548 + L2 LINE L2 3068 3313 0 270 0 0 0 chr12 25042226 25042256 -119240233 + (CA)n Simple_repeat Simple_repeat 1 30 0 333 276 20 20 chr12 25042434 25042532 -119239957 - MIR SINE MIR -64 144 47 23 0 0 0 chr12 25042699 25042722 -119239767 + AT_rich Low_complexity Low_complexity 1 23 0 320 260 135 103 chr12 25043118 25043526 -119238963 - L1ME4a LINE L1 -4 6117 5697 1515 181 66 7 chr12 25043817 25044105 -119238384 - AluJo SINE Alu -7 305 1 1037 216 42 0 chr12 25044823 25045036 -119237453 - MER58A DNA MER1_type 0 224 3 677 201 106 56 chr12 25045045 25045224 -119237265 + MER5A DNA MER1_type 1 188 -1 467 248 218 0 chr12 25045271 25045404 -119237085 + MER5A DNA MER1_type 26 187 -2 203 278 30 107 chr12 25045404 25045449 -119237040 - MER5A DNA MER1_type -147 42 11 2589 29 3 13 chr12 25045537 25045848 -119236641 - AluY SINE Alu -3 308 1 347 113 16 0 chr12 25045946 25046008 -119236481 + (TC)n Simple_repeat Simple_repeat 1 63 0 270 303 133 30 chr12 25046581 25046746 -119235743 + MIR SINE MIR 7 188 -74 2014 113 0 30 chr12 25047424 25047724 -119234765 + AluSx SINE Alu 3 293 -19 2070 127 3 0 chr12 25047726 25048025 -119234464 + AluSx SINE Alu 1 300 -12 2204 88 30 13 chr12 25048056 25048361 -119234128 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr12 25048604 25048626 -119233863 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 25048930 25048961 -119233528 + AT_rich Low_complexity Low_complexity 1 31 0 1989 139 3 0 chr12 25049055 25049349 -119233140 + AluJb SINE Alu 1 295 -17 1903 141 32 0 chr12 25049494 25049778 -119232711 + AluSq SINE Alu 1 293 -20 183 382 42 61 chr12 25050208 25050420 -119232069 - L2 LINE L2 -64 3208 3001 1882 190 66 0 chr12 25050423 25050817 -119231672 - L1ME LINE L1 -469 5697 5278 688 213 52 11 chr12 25050833 25051007 -119231482 + L1MB8 LINE L1 5957 6137 -41 2293 83 23 0 chr12 25052050 25052350 -119230139 + AluSx SINE Alu 1 307 -5 926 168 37 14 chr12 25052391 25052605 -119229884 + L1MB8 LINE L1 5954 6172 -6 2186 104 0 0 chr12 25052689 25053022 -119229467 + AluSg SINE Alu 1 333 0 254 296 23 11 chr12 25053048 25053136 -119229353 - MIR3 SINE MIR -12 196 108 931 182 101 0 chr12 25053356 25053565 -119228924 + MER33 DNA MER1_type 1 230 -94 2555 69 0 0 chr12 25053583 25053889 -119228600 + AluY SINE Alu 1 306 -5 27 29 0 0 chr12 25054568 25054602 -119227887 + AT_rich Low_complexity Low_complexity 1 34 0 371 290 73 24 chr12 25054991 25055115 -119227374 + L2 LINE L2 3142 3271 -1 1011 237 92 58 chr12 25055353 25056014 -119226475 - L2 LINE L2 -9 3304 2622 2250 109 3 0 chr12 25056311 25056604 -119225885 + AluSp SINE Alu 1 294 -19 967 152 0 18 chr12 25056738 25056902 -119225587 + FRAM SINE Alu 1 161 -5 506 139 5 233 chr12 25057062 25057264 -119225225 + L2 LINE L2 3158 3313 0 1302 151 43 0 chr12 25058840 25059072 -119223417 - Tigger7 DNA MER2_type 0 2487 2246 21 71 0 0 chr12 25059507 25059549 -119222940 + AT_rich Low_complexity Low_complexity 1 42 0 442 177 34 11 chr12 25059786 25059961 -119222528 + (TA)n Simple_repeat Simple_repeat 2 180 0 248 259 0 0 chr12 25059965 25060019 -119222470 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 181 364 11 23 chr12 25060771 25060859 -119221630 + L2 LINE L2 3227 3313 0 217 333 0 67 chr12 25060866 25060913 -119221576 - MIR3 SINE MIR -43 165 127 2618 46 0 0 chr12 25060913 25061217 -119221272 + AluY SINE Alu 1 304 -7 217 333 0 67 chr12 25061217 25061274 -119221215 - MIR3 SINE MIR -81 127 68 266 122 0 0 chr12 25062597 25062638 -119219851 - L1ME LINE L1 -540 5581 5541 24 53 0 0 chr12 25063123 25063161 -119219328 + AT_rich Low_complexity Low_complexity 1 38 0 399 337 88 6 chr12 25063218 25063399 -119219090 + MIR3 SINE MIR 10 205 -3 992 301 82 39 chr12 25063416 25063831 -119218658 + MLT1J LTR MaLR 1 433 -78 1627 275 126 33 chr12 25065152 25065813 -119216676 + HAL1 LINE L1 2 723 -1784 1241 166 28 63 chr12 25065839 25066263 -119216226 - L1MC/D LINE L1 -476 5704 5323 2415 88 0 3 chr12 25066263 25066569 -119215920 - AluSg SINE Alu -5 305 1 4516 263 111 32 chr12 25066575 25068276 -119214213 - L2 LINE L2 -512 2802 968 674 236 147 23 chr12 25068276 25068534 -119213955 + HAL1 LINE L1 2218 2507 0 345 276 146 20 chr12 25068724 25068970 -119213519 + L1ME4a LINE L1 5628 5904 -217 21 36 0 0 chr12 25069049 25069077 -119213412 + AT_rich Low_complexity Low_complexity 1 28 0 419 295 16 0 chr12 25069999 25070128 -119212361 - MER104 DNA Tc2 -11 169 39 6852 217 24 47 chr12 25070429 25072389 -119210100 + L1MB2 LINE L1 3424 5338 -815 2092 124 7 10 chr12 25073701 25073873 -119208616 - AluSx SINE Alu -7 305 133 2263 107 0 0 chr12 25073873 25074171 -119208318 - AluSq SINE Alu -15 298 1 2092 124 7 10 chr12 25074171 25074304 -119208185 - AluSx SINE Alu -179 133 1 21 0 0 0 chr12 25074316 25074337 -119208152 + AT_rich Low_complexity Low_complexity 1 21 0 3985 171 64 20 chr12 25074345 25075160 -119207329 + L1MB2 LINE L1 5319 6169 -2 1810 138 0 83 chr12 25075727 25076053 -119206436 - AluJo SINE Alu -13 299 1 26 0 0 0 chr12 25076676 25076702 -119205787 + AT_rich Low_complexity Low_complexity 1 26 0 252 226 0 0 chr12 25077052 25077114 -119205375 + (TAA)n Simple_repeat Simple_repeat 2 63 0 282 316 11 42 chr12 25077209 25077304 -119205185 + MIR SINE MIR 12 103 -159 552 218 56 7 chr12 25077381 25077523 -119204966 - MIR SINE MIR 0 262 114 379 191 122 82 chr12 25077616 25077763 -119204726 - MIR SINE MIR -104 158 6 1679 171 33 21 chr12 25078299 25078632 -119203857 - MER1B DNA MER1_type 0 337 1 2307 115 0 0 chr12 25078821 25079133 -119203356 + AluSx SINE Alu 1 312 0 874 296 156 39 chr12 25079375 25080151 -119202338 + L2 LINE L2 1783 2649 -665 794 184 184 10 chr12 25080340 25080536 -119201953 - MER2 DNA MER2_type 0 345 116 3053 205 28 66 chr12 25080540 25081399 -119201090 + LTR1B LTR ERV1 1 826 0 535 187 9 9 chr12 25081400 25081507 -119200982 - MER2 DNA MER2_type -232 113 7 252 0 0 0 chr12 25081720 25081748 -119200741 + (CA)n Simple_repeat Simple_repeat 2 29 0 1783 198 0 6 chr12 25081870 25082183 -119200306 - AluJo SINE Alu -1 311 1 329 319 67 8 chr12 25082530 25082723 -119199766 + MIR SINE MIR 8 208 -54 2002 149 3 3 chr12 25083642 25083971 -119198518 - AluJb SINE Alu 0 329 1 1066 173 51 46 chr12 25084172 25084369 -119198120 + AluJo SINE Alu 78 275 -37 303 296 75 44 chr12 25084395 25084554 -119197935 - L1MC4a LINE L1 -1868 5940 5777 754 290 39 23 chr12 25084557 25084730 -119197759 - L1MC4a LINE L1 -2076 5732 5550 1688 147 45 33 chr12 25084730 25084822 -119197667 + MER44D DNA MER2_type 2 91 -2400 2416 52 0 7 chr12 25084822 25085108 -119197381 - AluY SINE Alu -27 284 1 1688 147 45 33 chr12 25085108 25085348 -119197141 + MER44D DNA MER2_type 91 608 -1 754 290 39 23 chr12 25085348 25085481 -119197008 - L1MC4a LINE L1 -2258 5550 5421 2498 74 0 3 chr12 25085637 25085949 -119196540 + AluY SINE Alu 1 311 0 22 56 0 0 chr12 25086394 25086430 -119196059 + AT_rich Low_complexity Low_complexity 1 36 0 28 71 0 0 chr12 25087746 25087802 -119194687 + AT_rich Low_complexity Low_complexity 1 56 0 300 279 91 32 chr12 25088074 25088228 -119194261 - MIR SINE MIR -51 211 49 251 373 71 8 chr12 25088545 25088671 -119193818 - L2 LINE L2 -5 3267 3134 37 39 0 0 chr12 25088817 25088868 -119193621 + AT_rich Low_complexity Low_complexity 1 51 0 691 36 0 87 chr12 25088895 25089090 -119193399 + (TA)n Simple_repeat Simple_repeat 2 179 0 1524 219 23 7 chr12 25089125 25089427 -119193062 + AluJo SINE Alu 6 312 0 468 51 0 0 chr12 25090723 25090782 -119191707 + (CA)n Simple_repeat Simple_repeat 2 60 0 378 301 103 19 chr12 25092122 25092278 -119190211 - MIR SINE MIR -71 191 23 701 184 72 43 chr12 25092308 25092515 -119189974 - L1MC5 LINE L1 -48 7913 7701 189 264 57 0 chr12 25092920 25092973 -119189516 - L2 LINE L2 -7 3306 3251 182 286 116 18 chr12 25093102 25093214 -119189275 - MIR3 SINE MIR -4 204 82 26 50 0 0 chr12 25093661 25093701 -119188788 + AT_rich Low_complexity Low_complexity 1 40 0 2260 112 3 3 chr12 25094054 25094367 -119188122 - AluSq SINE Alu 0 313 1 447 297 8 24 chr12 25094579 25094711 -119187778 + MIR SINE MIR 31 160 -48 1790 115 40 0 chr12 25094921 25095174 -119187315 - AluSq SINE Alu -8 305 43 4106 181 18 34 chr12 25095275 25096191 -119186298 + L1MB7 LINE L1 5273 6173 -11 338 253 13 0 chr12 25097513 25097588 -119184901 + MER21B LTR ERV1 19 94 -769 * 2931 201 38 68 chr12 25097587 25098020 -119184469 + MER21B LTR ERV1 44 443 -420 1610 192 14 0 chr12 25098020 25098148 -119184341 + AluJb SINE Alu 3 128 -192 2320 111 0 0 chr12 25098148 25098454 -119184035 + AluSx SINE Alu 1 306 -6 1610 192 14 0 chr12 25098454 25098639 -119183850 + AluJb SINE Alu 128 320 0 2931 201 38 68 chr12 25098639 25099047 -119183442 + MER21B LTR ERV1 443 862 -1 2078 125 44 0 chr12 25099339 25099635 -119182854 + AluSx SINE Alu 1 309 -3 219 209 30 0 chr12 25100122 25100189 -119182300 + (TAA)n Simple_repeat Simple_repeat 2 70 0 842 213 85 38 chr12 25100250 25100319 -119182170 + MER58A DNA MER1_type 2 66 -2354 1858 155 42 0 chr12 25100319 25100603 -119181886 + AluJb SINE Alu 1 296 -16 842 213 85 38 chr12 25100603 25100744 -119181745 + MER58A DNA MER1_type 66 222 -2 499 306 7 28 chr12 25100869 25101013 -119181476 + MIR SINE MIR 2 142 -120 735 176 13 13 chr12 25101018 25101171 -119181318 + MIR SINE MIR 86 238 -24 2150 146 0 0 chr12 25101172 25101481 -119181008 - AluSx SINE Alu -3 309 1 222 300 63 90 chr12 25101895 25102150 -119180339 + L2 LINE L2 2881 3195 -77 653 150 108 0 chr12 25102150 25102270 -119180219 - FLAM_C SINE Alu 0 133 1 222 300 63 90 chr12 25102270 25102346 -119180143 + L2 LINE L2 3195 3272 0 1974 89 43 0 chr12 25102937 25103194 -119179295 + AluSx SINE Alu 1 268 -44 21 0 0 0 chr12 25104732 25104753 -119177736 + AT_rich Low_complexity Low_complexity 1 21 0 1737 188 3 3 chr12 25104756 25105044 -119177445 - AluJb SINE Alu -22 290 3 1950 141 40 23 chr12 25105321 25105625 -119176864 + AluSx SINE Alu 1 309 -3 245 262 262 0 chr12 25105628 25105712 -119176777 - L3 LINE CR1 -32 1545 1440 2182 114 0 10 chr12 25106635 25106934 -119175555 + AluSx SINE Alu 1 296 -16 2290 216 132 19 chr12 25107789 25108648 -119173841 + L1ME2 LINE L1 5205 6164 0 2162 144 0 0 chr12 25108730 25109036 -119173453 + AluJo SINE Alu 1 306 -6 207 100 0 0 chr12 25109041 25109071 -119173418 + (CCTA)n Simple_repeat Simple_repeat 2 31 0 377 371 0 0 chr12 25109729 25109869 -119172620 - MIR SINE MIR -120 142 3 2489 68 9 0 chr12 25110499 25110825 -119171664 + L1PA5 LINE L1 5821 6149 -5 1002 108 0 0 chr12 25112208 25112338 -119170151 - AluJb SINE Alu -181 131 2 38 39 0 0 chr12 25112470 25112522 -119169967 + AT_rich Low_complexity Low_complexity 1 52 0 198 0 0 0 chr12 25114062 25114084 -119168405 + (A)n Simple_repeat Simple_repeat 1 22 0 201 343 14 0 chr12 25114211 25114281 -119168208 - MIR3 SINE MIR -11 197 127 979 87 0 47 chr12 25115127 25115143 -119167346 - AluY SINE Alu -2 309 294 4043 128 14 22 chr12 25115143 25115729 -119166760 - L1MB1 LINE L1 -1 7586 6997 213 65 0 0 chr12 25115729 25115760 -119166729 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2171 71 4 4 chr12 25115760 25116040 -119166449 - AluSc SINE Alu -29 280 1 4043 128 14 22 chr12 25116040 25116148 -119166341 - L1MB1 LINE L1 -588 6999 6896 979 87 0 47 chr12 25116148 25116280 -119166209 - AluY SINE Alu -17 294 168 2409 72 13 3 chr12 25116280 25116584 -119165905 - AluY SINE Alu -4 307 1 11568 194 55 34 chr12 25116594 25116829 -119165660 - L1MB1 LINE L1 -694 6893 6664 6036 87 31 16 chr12 25116829 25117692 -119164797 + L1PA11 LINE L1 4438 5286 -888 2267 94 7 19 chr12 25117692 25117999 -119164490 + AluSx SINE Alu 1 303 -9 6036 87 31 16 chr12 25117999 25118839 -119163650 + L1PA11 LINE L1 5286 6174 0 11568 194 55 34 chr12 25118839 25122297 -119160192 - L1MB1 LINE L1 -923 6664 3083 2324 279 63 38 chr12 25122348 25123266 -119159223 - L1MB1 LINE L1 -4950 2536 1596 2287 89 0 3 chr12 25123524 25123816 -119158673 + AluSc SINE Alu 1 291 -18 626 329 77 11 chr12 25123953 25124227 -119158262 + L2 LINE L2 2340 2631 -683 423 68 0 0 chr12 25124274 25124333 -119158156 + (CA)n Simple_repeat Simple_repeat 2 60 0 245 254 0 0 chr12 25124334 25124397 -119158092 + MER112 DNA MER1_type 87 149 -111 1590 152 36 110 chr12 25124482 25124818 -119157671 + AluSx SINE Alu 1 311 -1 202 263 125 0 chr12 25124820 25124900 -119157589 + L2 LINE L2 2625 2714 -600 1103 262 89 14 chr12 25124931 25125433 -119157056 + L2 LINE L2 2702 3239 -74 1725 168 19 16 chr12 25125753 25126062 -119156427 - AluJo SINE Alu -2 310 1 440 214 20 41 chr12 25126272 25126370 -119156119 + MIR SINE MIR 20 115 -147 2520 48 0 0 chr12 25126560 25126854 -119155635 + AluY SINE Alu 2 295 -16 232 337 92 0 chr12 25127139 25127237 -119155252 - L2 LINE L2 -2 3311 3205 456 298 75 0 chr12 25127421 25127582 -119154907 + MIR3 SINE MIR 36 208 0 2367 95 7 0 chr12 25127632 25127928 -119154561 - AluSx SINE Alu -14 298 1 2068 121 7 0 chr12 25128712 25128992 -119153497 + AluSx SINE Alu 23 304 -8 207 224 20 20 chr12 25130056 25130105 -119152384 - L2 LINE L2 -31 3241 3193 261 294 33 11 chr12 25132538 25132630 -119149859 - L2 LINE L2 -33 3239 3146 553 205 87 25 chr12 25132652 25132813 -119149676 + Charlie8 DNA MER1_type 65 235 -2182 2217 115 3 3 chr12 25133034 25133338 -119149151 + AluSg SINE Alu 1 304 -6 1390 201 28 22 chr12 25133390 25133749 -119148740 + MLT1A1 LTR MaLR 5 365 0 2200 93 30 0 chr12 25134327 25134628 -119147861 + AluSp SINE Alu 1 310 -3 207 288 34 0 chr12 25134909 25134968 -119147521 + L2 LINE L2 3244 3304 -9 2210 102 10 3 chr12 25135602 25135895 -119146594 + AluSx SINE Alu 1 295 -17 255 241 102 66 chr12 25136151 25136317 -119146172 - MIR SINE MIR -88 174 3 967 178 0 22 chr12 25136441 25136621 -119145868 + FRAM SINE Alu 1 173 -3 370 333 90 7 chr12 25136837 25136981 -119145508 - MIR SINE MIR -71 191 36 1304 188 6 113 chr12 25137057 25137377 -119145112 + AluJo SINE Alu 1 286 -16 24 0 0 0 chr12 25137828 25137852 -119144637 + AT_rich Low_complexity Low_complexity 1 24 0 3399 161 31 31 chr12 25137926 25138064 -119144425 + L1MB7 LINE L1 5469 5606 -578 2109 121 3 0 chr12 25138064 25138372 -119144117 + AluSq SINE Alu 1 309 0 3399 161 31 31 chr12 25138372 25138595 -119143894 + L1MB7 LINE L1 5606 5828 -356 2441 85 0 0 chr12 25138595 25138900 -119143589 + AluY SINE Alu 1 305 -6 3399 161 31 31 chr12 25138900 25139242 -119143247 + L1MB7 LINE L1 5827 6174 -10 2035 258 89 10 chr12 25139607 25140112 -119142377 + L2 LINE L2 758 1324 -1990 953 184 8 98 chr12 25140112 25140357 -119142132 + MER58A DNA MER1_type 1 223 -1 2035 258 89 10 chr12 25140357 25140479 -119142010 + L2 LINE L2 1324 1435 -1879 1706 239 83 8 chr12 25140496 25140755 -119141734 + L2 LINE L2 2505 2743 -570 230 0 33 0 chr12 25140755 25140785 -119141704 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1706 239 83 8 chr12 25140785 25141127 -119141362 + L2 LINE L2 2743 3153 -160 246 271 0 0 chr12 25141894 25141953 -119140536 - MIR SINE MIR -54 208 150 23 0 0 0 chr12 25142433 25142456 -119140033 + AT_rich Low_complexity Low_complexity 1 23 0 2433 95 0 0 chr12 25143137 25143443 -119139046 - AluSq SINE Alu -5 308 3 1842 149 14 0 chr12 25143771 25144047 -119138442 - AluSx SINE Alu -2 310 31 533 299 64 0 chr12 25144114 25144301 -119138188 - MIR SINE MIR -49 213 15 1090 182 0 0 chr12 25145020 25145196 -119137293 + AluJb SINE Alu 137 312 0 518 250 43 7 chr12 25145830 25145970 -119136519 - L2 LINE L2 -9 3304 3160 331 239 37 18 chr12 25145996 25146105 -119136384 + L1ME LINE L1 5688 5798 -323 416 317 35 28 chr12 25146201 25146346 -119136143 - L2 LINE L2 -6 3266 3121 234 317 61 12 chr12 25146412 25146494 -119135995 - L2 LINE L2 -32 3240 3155 2863 193 76 63 chr12 25146494 25147309 -119135180 + LTR1B LTR ERV1 1 826 0 390 222 17 26 chr12 25147478 25147595 -119134894 + LTR67 LTR ERVL 435 550 -7 1659 174 3 37 chr12 25147781 25148102 -119134387 + AluJo SINE Alu 1 310 -2 2630 152 19 42 chr12 25148111 25148546 -119133943 + L1MB7 LINE L1 5669 6091 -93 2156 156 0 0 chr12 25148546 25148853 -119133636 - AluSx SINE Alu -5 307 1 2630 152 19 42 chr12 25148853 25148945 -119133544 + L1MB7 LINE L1 6091 6184 0 2155 110 52 0 chr12 25149517 25149808 -119132681 - AluSx SINE Alu -6 306 1 2239 117 0 0 chr12 25150076 25150375 -119132114 - AluSx SINE Alu -13 299 1 225 65 0 0 chr12 25151169 25151200 -119131289 + (T)n Simple_repeat Simple_repeat 1 31 0 180 136 91 23 chr12 25151259 25151303 -119131186 - L2 LINE L2 -4 3309 3263 28 0 0 0 chr12 25152038 25152066 -119130423 + AT_rich Low_complexity Low_complexity 1 28 0 2610 51 0 3 chr12 25152114 25152426 -119130063 + AluY SINE Alu 1 311 0 287 289 79 69 chr12 25152600 25152788 -119129701 - L1ME LINE L1 -298 5823 5639 1954 154 0 3 chr12 25152788 25153094 -119129395 - AluJo SINE Alu -7 305 1 287 289 79 69 chr12 25153094 25153295 -119129194 - L1ME LINE L1 -482 5639 5425 1941 139 14 0 chr12 25153451 25153739 -119128750 - AluSx SINE Alu -16 296 5 2270 112 0 13 chr12 25153830 25154144 -119128345 + AluSx SINE Alu 1 310 -2 726 178 98 25 chr12 25154468 25154631 -119127858 + MER5A DNA MER1_type 1 175 -14 547 242 82 41 chr12 25155050 25155244 -119127245 + MIR SINE MIR 4 205 -57 1897 154 38 0 chr12 25155800 25156093 -119126396 - AluJb SINE Alu -7 305 2 1315 218 43 94 chr12 25156221 25156708 -119125781 + MLT2B1 LTR ERVL 1 462 -58 1941 155 0 10 chr12 25156977 25157267 -119125222 - AluJo SINE Alu -24 288 2 2030 152 0 0 chr12 25157535 25157832 -119124657 - AluSx SINE Alu -15 297 1 838 148 7 7 chr12 25157834 25157969 -119124520 - AluJo SINE Alu -177 135 1 1310 231 108 67 chr12 25157969 25158225 -119124264 + L1MC5 LINE L1 7001 7245 -716 506 125 0 12 chr12 25158225 25158305 -119124184 + MADE1 DNA Mariner 1 79 -1 1310 231 108 67 chr12 25158305 25158322 -119124167 + L1MC5 LINE L1 7245 7260 -701 201 39 0 0 chr12 25158322 25158348 -119124141 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 1310 231 108 67 chr12 25158348 25158467 -119124022 + L1MC5 LINE L1 7260 7373 -588 2259 109 0 0 chr12 25158467 25158752 -119123737 + AluSq SINE Alu 1 285 -28 1310 231 108 67 chr12 25158752 25159154 -119123335 + L1MC5 LINE L1 7373 7830 -131 329 274 59 15 chr12 25159262 25159397 -119123092 + L1ME4a LINE L1 5975 6115 -6 5243 145 39 0 chr12 25159410 25160510 -119121979 - L1PA16 LINE L1 0 6166 5017 183 208 0 42 chr12 25160702 25160750 -119121739 - L3 LINE CR1 -910 667 622 638 283 143 0 chr12 25162151 25162374 -119120115 - MIR SINE MIR 0 262 8 436 290 140 21 chr12 25162455 25162648 -119119841 - MIR SINE MIR -14 248 33 607 194 37 30 chr12 25162779 25162913 -119119576 + AluJb SINE Alu 137 271 -41 207 0 0 0 chr12 25162922 25162945 -119119544 + (ATTAG)n Simple_repeat Simple_repeat 5 27 0 2189 129 3 0 chr12 25163347 25163656 -119118833 + AluSx SINE Alu 1 310 -2 261 269 10 48 chr12 25163964 25164068 -119118421 + LTR16A1 LTR ERVL 43 142 -315 2329 72 24 3 chr12 25164227 25164518 -119117971 + AluSg SINE Alu 1 297 -13 1259 159 0 56 chr12 25164820 25165052 -119117437 - AluJb SINE Alu -7 305 87 874 146 28 14 chr12 25165651 25165795 -119116694 - FAM SINE Alu -16 169 24 1712 169 4 4 chr12 25165834 25166113 -119116376 - AluSx SINE Alu -21 291 13 411 289 132 0 chr12 25166162 25166276 -119116213 - L2 LINE L2 -11 3261 3133 817 154 20 56 chr12 25166292 25166487 -119116002 - MER53 DNA DNA 0 189 2 825 110 0 0 chr12 25168958 25169067 -119113422 + AluJ SINE Alu 3 111 -201 1765 200 0 0 chr12 25169178 25169478 -119113011 - AluSx SINE Alu -12 300 1 871 259 29 13 chr12 25169535 25169774 -119112715 + MIR SINE MIR 19 261 -1 1692 168 33 0 chr12 25170812 25171116 -119111373 + AluSp SINE Alu 1 313 0 850 20 0 0 chr12 25171120 25171218 -119111271 + SVA Other Other 1288 1385 -1 24 0 0 0 chr12 25171218 25171242 -119111247 + AT_rich Low_complexity Low_complexity 1 24 0 1104 125 26 31 chr12 25171244 25171436 -119111053 + AluJ SINE Alu 120 310 -2 1771 126 20 0 chr12 25171632 25171879 -119110610 - AluSx SINE Alu -27 285 34 833 273 80 22 chr12 25172225 25172588 -119109901 + LTR33 LTR ERVL 54 437 -84 21 0 0 0 chr12 25172615 25172636 -119109853 + AT_rich Low_complexity Low_complexity 1 21 0 1762 148 20 40 chr12 25172886 25173184 -119109305 - AluJb SINE Alu -20 292 1 696 227 87 0 chr12 25173192 25173364 -119109125 - L1MC/D LINE L1 -2211 5597 5411 775 105 70 63 chr12 25173368 25173511 -119108978 + BC200 scRNA scRNA 6 149 -51 338 245 152 31 chr12 25173514 25173684 -119108805 - L1MC/D LINE L1 -749 5397 5237 464 274 42 19 chr12 25173957 25174169 -119108320 + L1MC4a LINE L1 5635 5851 -1957 213 115 39 19 chr12 25174240 25174292 -119108197 + A-rich Low_complexity Low_complexity 2 54 0 2054 131 0 16 chr12 25174751 25175063 -119107426 + AluJb SINE Alu 3 309 -3 1450 263 82 45 chr12 25175338 25176000 -119106489 - L2 LINE L2 0 3313 2676 1990 146 3 29 chr12 25176000 25176315 -119106174 + AluJb SINE Alu 1 307 -5 1450 263 82 45 chr12 25176315 25176595 -119105894 - L2 LINE L2 -637 2676 2327 594 181 79 39 chr12 25176595 25176722 -119105767 + FLAM_C SINE Alu 1 132 -1 1450 263 82 45 chr12 25176722 25176744 -119105745 - L2 LINE L2 -986 2327 2307 1613 143 31 17 chr12 25176804 25177097 -119105392 - L1MA8 LINE L1 -2 6289 5993 866 147 0 0 chr12 25177163 25177279 -119105210 + FLAM_C SINE Alu 1 116 -27 218 54 0 27 chr12 25177279 25177316 -119105173 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 3906 239 101 23 chr12 25177348 25177854 -119104635 - L2 LINE L2 -1001 2313 1848 2332 102 3 0 chr12 25177854 25178159 -119104330 + AluSq SINE Alu 1 306 -7 3906 239 101 23 chr12 25178159 25179056 -119103433 - L2 LINE L2 -1466 1848 800 293 271 0 0 chr12 25179056 25179115 -119103374 + MLT-int LTR MaLR 925 983 -752 433 197 136 91 chr12 25179162 25179193 -119103296 + L2 LINE L2 1747 1775 -1539 2075 121 0 27 chr12 25179193 25179490 -119102999 - AluSx SINE Alu -23 289 1 433 197 136 91 chr12 25179490 25179656 -119102833 + L2 LINE L2 1775 1953 -1361 2276 105 0 13 chr12 25180450 25180756 -119101733 - AluSg SINE Alu -8 302 1 1586 172 71 68 chr12 25181242 25181332 -119101157 + MSTD LTR MaLR 1 89 -307 2605 62 0 0 chr12 25181332 25181637 -119100852 + AluY SINE Alu 1 305 -6 1586 172 71 68 chr12 25181637 25181941 -119100548 + MSTD LTR MaLR 89 396 0 2011 228 7 2 chr12 25181943 25182369 -119100120 + MSTD-int LTR MaLR 2 429 -1306 2448 238 85 65 chr12 25182370 25183089 -119099400 + MSTD-int LTR MaLR 644 1376 -359 937 220 6 0 chr12 25183090 25183258 -119099231 - FAM SINE Alu -16 169 1 1794 193 57 8 chr12 25183260 25183612 -119098877 + MSTD-int LTR MaLR 1367 1735 0 1713 201 91 3 chr12 25183613 25183976 -119098513 + MSTD LTR MaLR 2 396 0 628 239 184 5 chr12 25184146 25184364 -119098125 + MIR SINE MIR 2 258 -4 728 217 47 113 chr12 25184422 25184826 -119097663 - MLT1F1 LTR MaLR -8 534 55 1232 160 19 123 chr12 25185235 25185360 -119097129 + AluJo SINE Alu 1 137 -175 2111 96 38 14 chr12 25185360 25185652 -119096837 + AluSg SINE Alu 12 310 0 1232 160 19 123 chr12 25185652 25185844 -119096645 + AluJo SINE Alu 137 285 -27 189 0 0 0 chr12 25185844 25185865 -119096624 + (CATA)n Simple_repeat Simple_repeat 2 22 0 1404 210 35 43 chr12 25186599 25186971 -119095518 - MLT1B LTR MaLR 0 390 22 1621 168 31 3 chr12 25187023 25187309 -119095180 - AluJb SINE Alu -10 302 9 2684 43 0 0 chr12 25187477 25187778 -119094711 - AluY SINE Alu -10 301 1 1062 141 23 6 chr12 25188048 25188225 -119094264 - MER3 DNA MER1_type -28 181 2 1725 162 67 0 chr12 25188607 25188891 -119093598 + AluJb SINE Alu 1 303 -9 741 279 37 25 chr12 25188967 25189211 -119093278 + MIR SINE MIR 8 254 -8 933 109 23 0 chr12 25189467 25189595 -119092894 - FLAM_C SINE Alu -2 131 1 2178 116 0 19 chr12 25189714 25190025 -119092464 - AluSq SINE Alu -8 305 1 844 174 45 13 chr12 25190028 25190183 -119092306 - FRAM SINE Alu -6 160 1 3047 151 43 17 chr12 25190328 25190857 -119091632 - LTR35 LTR ERV1 0 618 76 2207 106 0 0 chr12 25191005 25191321 -119091168 + AluSx SINE Alu 1 316 0 267 203 47 0 chr12 25191431 25191495 -119090994 - L2 LINE L2 -4 3309 3243 25 31 0 0 chr12 25191567 25191599 -119090890 + AT_rich Low_complexity Low_complexity 1 32 0 559 227 80 0 chr12 25192000 25192150 -119090339 + MER20B DNA MER1_type 193 354 -429 2212 109 0 7 chr12 25192226 25192528 -119089961 + AluSx SINE Alu 1 300 -12 2430 124 89 2 chr12 25192696 25193090 -119089399 + MSTA LTR MaLR 1 428 0 323 178 50 30 chr12 25193481 25193582 -119088907 + LTR37B LTR ERV1 244 346 -122 1851 201 41 0 chr12 25193588 25193982 -119088507 - MER41B LTR ERV1 -88 547 138 936 219 31 0 chr12 25194020 25194212 -119088277 - MER41D LTR ERV1 -359 198 1 1961 121 0 15 chr12 25194292 25194608 -119087881 - AluSx SINE Alu 0 326 15 1902 163 0 0 chr12 25194616 25194904 -119087585 - AluJo SINE Alu -24 288 1 252 83 0 0 chr12 25194904 25194940 -119087549 - MER41D-int LTR ERV1 -56 7149 7114 2000 186 9 3 chr12 25195028 25195366 -119087123 - MER41D-int LTR ERV1 -81 6595 6256 496 252 7 7 chr12 25195366 25195505 -119086984 + LTR37B LTR ERV1 328 466 -2 239 210 0 97 chr12 25195789 25195851 -119086638 + MER63A DNA MER1_type 2 57 0 * 3207 142 26 17 chr12 25195829 25196362 -119086127 + MER61E LTR ERV1 4 789 -5 591 292 0 0 chr12 25196377 25196531 -119085958 + MER63A DNA MER1_type 57 210 0 1914 158 3 3 chr12 25197603 25197900 -119084589 - AluJb SINE Alu -15 297 1 1288 243 78 18 chr12 25198357 25198752 -119083737 + L1MEc LINE L1 53 471 -5925 2138 142 0 0 chr12 25199260 25199571 -119082918 - AluSq SINE Alu -2 311 1 956 145 0 0 chr12 25199697 25199828 -119082661 + AluSg SINE Alu 1 131 -179 1498 115 100 2 chr12 25199970 25200289 -119082200 - L1 LINE L1 -3812 3753 3400 3511 128 34 82 chr12 25200298 25200985 -119081504 - MER4A LTR ERV1 -10 654 1 3446 100 14 0 chr12 25200985 25201493 -119080996 - L1 LINE L1 -4162 3403 2889 * 16060 127 9 24 chr12 25201491 25202963 -119079526 - L1 LINE L1 -5187 2378 954 2361 99 0 3 chr12 25202963 25203266 -119079223 - AluSg SINE Alu -8 302 1 16060 127 9 24 chr12 25203266 25204195 -119078294 - L1 LINE L1 -6611 954 13 196 303 0 15 chr12 25204349 25204415 -119078074 - MER5A DNA MER1_type -68 121 57 203 293 0 0 chr12 25204416 25204474 -119078015 - L2 LINE L2 -2503 811 754 526 224 82 0 chr12 25204805 25204952 -119077537 - MIR SINE MIR 0 262 104 2367 106 0 0 chr12 25204997 25205300 -119077189 + AluSx SINE Alu 1 303 -9 2127 122 30 3 chr12 25205524 25205828 -119076661 + AluSx SINE Alu 1 312 0 237 108 0 0 chr12 25205870 25205907 -119076582 + (CA)n Simple_repeat Simple_repeat 2 38 0 665 282 75 19 chr12 25206074 25206340 -119076149 - MLT1L LTR MaLR -13 602 322 1012 128 34 34 chr12 25206353 25206532 -119075957 + L1MB1 LINE L1 5953 6131 -37 1814 168 3 0 chr12 25206532 25206842 -119075647 + AluJo SINE Alu 1 311 0 2209 74 20 34 chr12 25206846 25207144 -119075345 + AluSp SINE Alu 4 297 -16 216 257 0 0 chr12 25207218 25207288 -119075201 + GA-rich Low_complexity Low_complexity 2 71 0 235 282 64 13 chr12 25207312 25207390 -119075099 - MLT1L LTR MaLR -319 296 215 1829 170 23 0 chr12 25207571 25207871 -119074618 - AluJb SINE Alu -3 309 3 1963 112 3 67 chr12 25207969 25208299 -119074190 + AluSq SINE Alu 1 309 -4 2283 115 19 43 chr12 25208514 25208887 -119073602 - THE1B LTR MaLR 0 364 1 1264 150 4 64 chr12 25208915 25208961 -119073528 - MER20B DNA MER1_type 0 219 172 2217 110 0 10 chr12 25208961 25209261 -119073228 - AluSx SINE Alu -15 297 1 1264 150 4 64 chr12 25209261 25209447 -119073042 - MER20B DNA MER1_type -47 172 1 2524 63 3 0 chr12 25210406 25210709 -119071780 - AluY SINE Alu -7 304 1 201 121 0 0 chr12 25210845 25210878 -119071611 + (TG)n Simple_repeat Simple_repeat 1 33 0 1599 157 85 24 chr12 25211594 25211888 -119070601 - AluJo SINE Alu 0 312 1 28 0 0 0 chr12 25211943 25211971 -119070518 + AT_rich Low_complexity Low_complexity 1 28 0 505 164 19 9 chr12 25212031 25212148 -119070341 + MER61B LTR ERV1 33 106 -319 1709 206 12 12 chr12 25212155 25212494 -119069995 + LTR27 LTR ERV1 298 636 0 2181 103 26 10 chr12 25212643 25212945 -119069544 - AluSx SINE Alu -5 307 1 2305 159 11 16 chr12 25212946 25213386 -119069103 - L1MB7 LINE L1 -4 6180 5743 288 327 30 0 chr12 25213410 25213511 -119068978 + L2 LINE L2 3137 3240 -32 200 349 15 0 chr12 25214049 25214115 -119068374 - L2 LINE L2 -87 3185 3119 710 162 22 22 chr12 25214129 25214265 -119068224 + FLAM_C SINE Alu 1 136 -7 405 0 0 0 chr12 25217046 25217091 -119065398 + (TG)n Simple_repeat Simple_repeat 1 45 0 2034 147 82 31 chr12 25217526 25217942 -119064547 + LTR23 LTR ERV1 1 437 0 1722 158 42 3 chr12 25218414 25218698 -119063791 - AluSx SINE Alu -7 305 11 2556 57 0 0 chr12 25220255 25220556 -119061933 - AluY SINE Alu -10 301 1 2091 140 3 0 chr12 25220740 25221047 -119061442 - AluJb SINE Alu -4 308 1 2099 100 0 11 chr12 25221699 25221980 -119060509 - AluSx SINE Alu -14 298 21 341 309 63 17 chr12 25221986 25222161 -119060328 + L2 LINE L2 2456 2638 -676 326 176 40 14 chr12 25224059 25224133 -119058356 + L1MC/D LINE L1 5658 5733 -2075 2186 120 13 3 chr12 25224396 25224704 -119057785 - AluSx SINE Alu -1 311 1 2100 121 4 0 chr12 25225085 25225394 -119057095 + AluSx SINE Alu 1 310 0 205 290 16 0 chr12 25225470 25225532 -119056957 - L2 LINE L2 -209 3063 3001 268 335 166 24 chr12 25225764 25226338 -119056151 + L2 LINE L2 158 812 -2502 818 166 25 55 chr12 25226578 25226767 -119055722 + AluJb SINE Alu 140 312 0 574 322 123 45 chr12 25226782 25227270 -119055219 + L2 LINE L2 2736 3255 -17 667 236 38 6 chr12 25227681 25227838 -119054651 + FAM SINE Alu 13 174 -11 240 163 0 0 chr12 25227984 25228027 -119054462 + (TG)n Simple_repeat Simple_repeat 1 43 0 2527 173 177 106 chr12 25228666 25229470 -119053019 + MER21B LTR ERV1 1 861 -2 209 32 0 32 chr12 25229530 25229561 -119052928 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 554 269 109 25 chr12 25229788 25229924 -119052565 - MIR SINE MIR 0 262 139 1978 147 65 37 chr12 25229924 25230278 -119052211 - THE1B LTR MaLR 0 364 1 554 269 109 25 chr12 25230278 25230379 -119052110 - MIR SINE MIR -123 139 5 187 267 200 25 chr12 25230967 25231087 -119051402 - L2 LINE L2 -4 3309 3169 256 224 24 71 chr12 25231160 25231245 -119051244 + Charlie2 DNA MER1_type 27 107 -2755 1235 134 20 111 chr12 25231295 25231621 -119050868 + LOR1-int LTR ERV1 4545 4853 -1410 191 35 0 35 chr12 25232293 25232322 -119050167 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 5286 135 27 47 chr12 25232350 25232515 -119049974 + LOR1-int LTR ERV1 3441 3608 -2723 2110 60 84 14 chr12 25232515 25232799 -119049690 + AluY SINE Alu 3 306 -5 5286 135 27 47 chr12 25232799 25233156 -119049333 + LOR1-int LTR ERV1 3608 3971 -2360 2012 106 0 7 chr12 25233156 25233481 -119049008 + AluSg SINE Alu 1 323 0 5286 135 27 47 chr12 25233481 25233825 -119048664 + LOR1-int LTR ERV1 3971 4320 -2011 2096 129 0 3 chr12 25233825 25234119 -119048370 - AluSx SINE Alu -19 293 1 5286 135 27 47 chr12 25234119 25234203 -119048286 + LOR1-int LTR ERV1 4320 5430 -901 23 0 0 0 chr12 25234837 25234860 -119047629 + AT_rich Low_complexity Low_complexity 1 23 0 3829 153 64 26 chr12 25234872 25235591 -119046898 + LOR1-int LTR ERV1 5422 6167 -164 1977 107 48 0 chr12 25235612 25235733 -119046756 + AluSp SINE Alu 1 115 -216 245 51 26 0 chr12 25235733 25235772 -119046717 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 1977 107 48 0 chr12 25235772 25235968 -119046521 + AluSp SINE Alu 115 331 0 1765 80 43 114 chr12 25235968 25236012 -119046477 - LTR24B LTR ERV1 -274 302 256 1565 177 30 10 chr12 25236012 25236312 -119046177 - AluJo SINE Alu -2 310 5 1765 80 43 114 chr12 25236312 25236592 -119045897 - LTR24B LTR ERV1 -320 256 1 335 330 94 35 chr12 25236882 25237221 -119045268 - HAL1 LINE L1 -2144 363 5 956 178 0 0 chr12 25237335 25237492 -119044997 - AluSg/x SINE Alu 0 312 156 11204 42 13 32 chr12 25237704 25239105 -119043384 - SVA Other Other -6 1380 7 2443 155 57 26 chr12 25239139 25239654 -119042835 - MLT2C2 LTR ERVL 0 520 2 955 263 45 48 chr12 25239926 25240367 -119042122 - L1MC4 LINE L1 -390 7652 7213 330 273 2 23 chr12 25240835 25240952 -119041537 + MIR SINE MIR 39 152 -81 1725 132 28 38 chr12 25240963 25241251 -119041238 + AluJb SINE Alu 1 285 -27 2985 149 61 16 chr12 25241349 25241784 -119040705 + MER68 LTR ERV1 1 464 -98 2218 97 3 3 chr12 25241784 25242082 -119040407 - AluSc SINE Alu -11 298 1 2985 149 61 16 chr12 25242082 25242155 -119040334 + MER68 LTR ERV1 464 532 -30 303 173 0 99 chr12 25242155 25242236 -119040253 + MIR SINE MIR 116 188 -74 1105 180 12 0 chr12 25242344 25242516 -119039973 + FAM SINE Alu 1 174 -1 240 163 0 0 chr12 25242662 25242705 -119039784 + (TG)n Simple_repeat Simple_repeat 1 43 0 602 177 119 16 chr12 25243344 25243572 -119038917 + MER21B LTR ERV1 1 336 -527 1492 199 7 11 chr12 25243784 25244066 -119038423 + AluSg SINE Alu 16 296 -14 2654 112 18 15 chr12 25244107 25244508 -119037981 + MER39B LTR ERV1 79 480 -173 260 56 28 0 chr12 25245114 25245150 -119037339 - AluJb SINE Alu -167 135 99 * 831 157 17 51 chr12 25245147 25245325 -119037164 + MER39B LTR ERV1 482 653 0 1806 222 92 38 chr12 25245336 25245434 -119037055 + Charlie2b DNA MER1_type 933 1024 -1758 988 150 0 0 chr12 25245434 25245567 -119036922 - FLAM_C SINE Alu 0 133 1 1806 222 92 38 chr12 25245567 25245618 -119036871 + Charlie2b DNA MER1_type 1024 1071 -1711 2345 67 0 20 chr12 25245618 25245917 -119036572 - AluY SINE Alu -18 293 1 1806 222 92 38 chr12 25245917 25246374 -119036115 + Charlie2b DNA MER1_type 1071 1573 -1209 1124 263 62 73 chr12 25246560 25247026 -119035463 + Charlie7 DNA MER1_type 39 509 -2103 2161 96 17 10 chr12 25247026 25247327 -119035162 - AluSx SINE Alu -9 303 1 1124 263 62 73 chr12 25247327 25247614 -119034875 + Charlie7 DNA MER1_type 509 2487 -125 637 223 130 121 chr12 25247663 25247723 -119034766 - MLT1F LTR MaLR 0 595 537 2115 108 0 11 chr12 25247723 25248058 -119034431 - AluSx SINE Alu 0 332 1 637 223 130 121 chr12 25248058 25248450 -119034039 - MLT1F LTR MaLR -58 537 138 731 251 132 8 chr12 25248450 25248701 -119033788 + MLT1C LTR MaLR 186 467 0 442 267 150 16 chr12 25249121 25249308 -119033181 - MIR SINE MIR 0 262 51 936 134 60 21 chr12 25249377 25249394 -119033095 - MER3 DNA MER1_type -37 125 110 1831 156 3 17 chr12 25249394 25249695 -119032794 - AluJb SINE Alu -15 297 1 936 134 60 21 chr12 25249695 25249862 -119032627 - MER3 DNA MER1_type -52 110 1 909 133 0 20 chr12 25250206 25250357 -119032132 - LTR7 LTR ERV1 0 450 303 844 135 21 13 chr12 25250590 25250754 -119031735 - LTR7 LTR ERV1 -233 217 1 223 334 78 43 chr12 25250931 25251278 -119031211 - L2 LINE L2 -337 2977 2619 394 288 27 0 chr12 25251420 25251531 -119030958 + MER58A DNA MER1_type 1 114 0 271 169 93 110 chr12 25251535 25251653 -119030836 - MIR SINE MIR -37 225 110 377 312 117 18 chr12 25251654 25251936 -119030553 + L2 LINE L2 2186 2495 -819 1223 189 9 5 chr12 25251941 25252158 -119030331 - AluJb SINE Alu -9 303 86 223 282 67 87 chr12 25252182 25252331 -119030158 + L2 LINE L2 2543 2688 -626 1480 160 105 91 chr12 25252541 25252960 -119029529 + LTR37A LTR ERV1 1 425 -1 213 367 51 10 chr12 25253115 25253213 -119029276 + L2 LINE L2 2965 3066 -206 305 208 117 0 chr12 25253458 25253535 -119028954 - L2 LINE L2 -1043 2271 2186 1969 137 0 0 chr12 25253647 25253947 -119028542 + AluSx SINE Alu 1 300 -12 219 354 20 20 chr12 25257033 25257132 -119025357 - L2 LINE L2 -23 3290 3192 2090 107 38 3 chr12 25257202 25257491 -119024998 - AluSx SINE Alu -13 299 1 1497 192 19 23 chr12 25257538 25257845 -119024644 - AluJo SINE Alu -6 306 1 207 88 0 0 chr12 25258074 25258108 -119024381 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 4020 112 19 52 chr12 25258113 25258810 -119023679 - L1MA4A LINE L1 -178 6125 5452 2140 117 44 0 chr12 25259334 25259632 -119022857 + AluSx SINE Alu 1 311 -1 2215 124 0 0 chr12 25260300 25260606 -119021883 + AluSx SINE Alu 2 307 -5 200 212 106 59 chr12 25261247 25261332 -119021157 - L2 LINE L2 -1 3271 3183 1991 125 17 0 chr12 25261369 25261664 -119020825 - AluSq SINE Alu -13 300 1 619 216 151 11 chr12 25261668 25261853 -119020636 - MER58A DNA MER1_type -11 213 3 957 136 0 0 chr12 25261999 25262131 -119020358 + FLAM_C SINE Alu 1 132 -11 2008 108 0 7 chr12 25262600 25262878 -119019611 - AluSc SINE Alu -3 306 31 232 270 95 0 chr12 25263520 25263594 -119018895 + Charlie8 DNA MER1_type 31 111 -2306 188 327 55 36 chr12 25264688 25264798 -119017691 + MIR SINE MIR 36 147 -61 208 277 62 0 chr12 25264948 25265013 -119017476 - MIR SINE MIR -141 121 53 1964 161 0 0 chr12 25265282 25265586 -119016903 - AluJo SINE Alu -8 304 1 384 192 512 0 chr12 25265630 25265755 -119016734 - MER5A DNA MER1_type 0 189 1 422 178 41 0 chr12 25265889 25265955 -119016534 + MER21A LTR ERV1 704 772 -159 589 89 0 0 chr12 25265955 25266034 -119016455 + MER41B LTR ERV1 1 79 -556 387 0 0 0 chr12 25266059 25266102 -119016387 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 2328 75 0 29 chr12 25266105 25266413 -119016076 + AluY SINE Alu 1 299 -12 303 195 101 101 chr12 25266633 25266802 -119015687 - MLT1G LTR MaLR -36 506 338 * 672 157 0 0 chr12 25266782 25266890 -119015599 - MER41B LTR ERV1 -326 309 202 361 259 65 50 chr12 25266931 25267070 -119015419 - MLT1G LTR MaLR -306 284 144 988 151 13 0 chr12 25267076 25267235 -119015254 - MER21A LTR ERV1 -2 929 769 2688 141 21 0 chr12 25267235 25267653 -119014836 - MER41B LTR ERV1 0 635 209 1641 226 112 70 chr12 25267948 25268350 -119014139 - L1MC5 LINE L1 -131 7830 7446 2256 109 0 0 chr12 25268350 25268635 -119013854 - AluSq SINE Alu -28 285 1 1641 226 112 70 chr12 25268635 25268754 -119013735 - L1MC5 LINE L1 -515 7446 7333 201 39 0 0 chr12 25268754 25268780 -119013709 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 1641 226 112 70 chr12 25268780 25268797 -119013692 - L1MC5 LINE L1 -628 7333 7318 547 138 0 12 chr12 25268797 25268877 -119013612 - MADE1 DNA Mariner -1 79 1 1641 226 112 70 chr12 25268877 25269133 -119013356 - L1MC5 LINE L1 -643 7318 7001 1900 128 6 31 chr12 25269133 25269453 -119013036 + AluJb SINE Alu 1 312 0 21 36 0 0 chr12 25269551 25269579 -119012910 + AT_rich Low_complexity Low_complexity 1 28 0 422 231 61 21 chr12 25269683 25270012 -119012477 - L1M4 LINE L1 -3195 2951 2510 1777 154 26 13 chr12 25270898 25271203 -119011286 + AluJb SINE Alu 1 309 -3 1898 147 0 27 chr12 25271567 25271867 -119010622 - AluSx SINE Alu -20 292 1 359 323 40 8 chr12 25272234 25272358 -119010131 - MIR3 SINE MIR -67 141 14 723 273 102 20 chr12 25272677 25273069 -119009420 - L1M4 LINE L1 -814 5332 4909 594 128 34 151 chr12 25273118 25273297 -119009192 - L1MA4 LINE L1 -3 6297 6140 330 183 28 14 chr12 25273644 25273715 -119008774 - MER58 DNA MER1_type -1 2419 2348 349 279 59 0 chr12 25273720 25273856 -119008633 + L1M4 LINE L1 4950 5093 -1053 1727 175 32 0 chr12 25273877 25274162 -119008327 - AluJb SINE Alu -18 294 1 307 277 0 0 chr12 25274176 25274241 -119008248 - MER58 DNA MER1_type -86 255 191 1836 106 68 0 chr12 25275065 25275330 -119007159 - L1PA11 LINE L1 -1 6173 5891 1097 208 24 20 chr12 25275454 25275748 -119006741 - L1M4 LINE L1 -2168 3978 3684 183 80 0 0 chr12 25275748 25275773 -119006716 + (T)n Simple_repeat Simple_repeat 1 25 0 1926 157 25 25 chr12 25275820 25276177 -119006312 + MER47A DNA MER2_type 9 365 -1 235 231 127 29 chr12 25276305 25276411 -119006078 - MER5A DNA MER1_type -6 183 65 241 313 62 0 chr12 25277270 25277350 -119005139 + MER5A DNA MER1_type 75 159 -30 2137 110 3 0 chr12 25277696 25278002 -119004487 - AluSx SINE Alu 0 307 1 1111 163 30 10 chr12 25278238 25278440 -119004049 + MER46A DNA MER2_type 25 230 -6 342 246 56 32 chr12 25280951 25281001 -119001488 - MIR SINE MIR -34 228 181 2221 112 17 0 chr12 25281001 25281296 -119001193 - AluSx SINE Alu -12 300 1 342 246 56 32 chr12 25281296 25281371 -119001118 - MIR SINE MIR -81 181 100 340 299 65 19 chr12 25281401 25281508 -119000981 - L2 LINE L2 -27 3245 3134 187 149 21 21 chr12 25281744 25281791 -119000698 + (CATA)n Simple_repeat Simple_repeat 4 50 0 348 83 0 0 chr12 25282016 25282064 -119000425 + (CA)n Simple_repeat Simple_repeat 2 49 0 1172 238 83 60 chr12 25282392 25282491 -118999998 - L1ME LINE L1 -489 5681 5586 2250 132 52 3 chr12 25282491 25282818 -118999671 - MER61A LTR ERV1 0 343 1 1172 238 83 60 chr12 25282818 25283583 -118998906 - L1ME LINE L1 -584 5586 4805 230 272 7 73 chr12 25283581 25283717 -118998772 - L1MC4a LINE L1 -1873 5935 5809 * 1821 256 118 30 chr12 25283753 25284014 -118998475 - HsTC2c DNA Tc2 -1169 729 493 2246 104 0 0 chr12 25284014 25284313 -118998176 - AluSx SINE Alu -3 309 11 1821 256 118 30 chr12 25284313 25284695 -118997794 - HsTC2c DNA Tc2 -1405 493 29 4728 110 112 111 chr12 25284740 25286151 -118996338 - pTR5 LTR ERV1 -1 2437 741 22 35 0 0 chr12 25286361 25286390 -118996099 + AT_rich Low_complexity Low_complexity 1 29 0 225 149 0 43 chr12 25286390 25286437 -118996052 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 1420 289 120 16 chr12 25286641 25287450 -118995039 - L2 LINE L2 -793 2521 1629 684 227 134 6 chr12 25287877 25288049 -118994440 - MER58A DNA MER1_type -1 223 30 1723 195 0 3 chr12 25288097 25288395 -118994094 - AluJo SINE Alu -15 297 1 272 284 142 16 chr12 25288725 25288852 -118993637 - MIR SINE MIR -18 244 102 1742 197 53 22 chr12 25289279 25289733 -118992756 - MER72 LTR ERV1 0 722 157 3977 160 21 3 chr12 25289738 25290362 -118992127 - MER41B LTR ERV1 0 635 1 5167 134 36 19 chr12 25290362 25291213 -118991276 - MER41B-int LTR ERV1 0 5946 5081 2136 120 3 16 chr12 25292509 25292817 -118989672 - AluSx SINE Alu -8 304 1 437 279 86 21 chr12 25292849 25293082 -118989407 + HAL1 LINE L1 1074 1321 -1186 1556 250 68 51 chr12 25293113 25293802 -118988687 + HAL1 LINE L1 1418 2118 -389 370 306 170 5 chr12 25293822 25294137 -118988352 + L2 LINE L2 2726 3146 -167 1572 157 0 90 chr12 25294274 25294415 -118988074 - AluSx SINE Alu -38 274 173 2420 92 0 0 chr12 25294415 25294721 -118987768 - AluSg SINE Alu -4 306 1 1572 157 0 90 chr12 25294721 25294879 -118987610 - AluSx SINE Alu -139 173 2 602 271 99 0 chr12 25294880 25295061 -118987428 - MIR SINE MIR -59 203 5 1514 155 122 62 chr12 25295116 25295246 -118987243 + THE1C LTR MaLR 1 122 -253 4010 101 87 7 chr12 25295246 25295811 -118986678 - LTR9 LTR ERV1 -2 610 1 1514 155 122 62 chr12 25295811 25296034 -118986455 + THE1C LTR MaLR 122 375 0 233 268 0 56 chr12 25296043 25296114 -118986375 + L2 LINE L2 3247 3313 0 2208 97 4 0 chr12 25296164 25296443 -118986046 - AluSq SINE Alu -12 301 22 200 235 10 61 chr12 25297020 25297118 -118985371 + L2 LINE L2 2540 2632 -682 2307 212 34 48 chr12 25297135 25297782 -118984707 - MLT1D-int LTR MaLR -732 639 2 270 246 0 0 chr12 25297794 25297851 -118984638 - MLT1D LTR MaLR -12 493 437 1793 156 39 3 chr12 25297851 25298133 -118984356 - AluSx SINE Alu -20 292 1 290 337 47 21 chr12 25298624 25298817 -118983672 - L1ME3A LINE L1 -10 6160 5963 273 181 153 0 chr12 25298855 25298927 -118983562 - L1ME3A LINE L1 -201 5969 5887 257 326 183 34 chr12 25299061 25299236 -118983253 - MER115 DNA AcHobo -248 445 245 270 0 0 0 chr12 25299248 25299278 -118983211 + (TA)n Simple_repeat Simple_repeat 1 30 0 2082 138 6 6 chr12 25299278 25299590 -118982899 - AluSx SINE Alu 0 312 1 2280 116 0 0 chr12 25299774 25300084 -118982405 - AluJb SINE Alu -2 310 1 305 208 117 0 chr12 25300196 25300273 -118982216 + L2 LINE L2 2186 2271 -1043 3452 133 4 0 chr12 25301038 25301548 -118980941 - MER41B LTR ERV1 -123 512 1 2212 164 37 35 chr12 25301548 25301943 -118980546 - MER21A LTR ERV1 -159 772 377 249 220 40 0 chr12 25301946 25301996 -118980493 - MER21A LTR ERV1 -667 264 213 773 169 0 42 chr12 25301996 25302138 -118980351 - FLAM_C SINE Alu -3 140 5 867 57 49 16 chr12 25302168 25302290 -118980199 - MER21A LTR ERV1 -775 156 31 750 234 51 11 chr12 25302286 25302461 -118980028 - MLT1G1 LTR MaLR -408 187 6 * 3502 120 102 11 chr12 25302560 25303118 -118979371 - LTR9 LTR ERV1 -3 609 1 308 346 47 0 chr12 25303218 25303325 -118979164 - L2 LINE L2 -1 3312 3201 2071 125 34 0 chr12 25303326 25303621 -118978868 - AluSx SINE Alu -7 305 1 290 337 47 21 chr12 25304112 25304305 -118978184 - L1ME3A LINE L1 -10 6160 5963 273 181 153 0 chr12 25304343 25304415 -118978074 - L1ME3A LINE L1 -201 5969 5887 207 0 0 0 chr12 25304736 25304759 -118977730 + (TA)n Simple_repeat Simple_repeat 1 23 0 1508 124 0 0 chr12 25304759 25304976 -118977513 - AluSg/x SINE Alu -3 309 93 709 135 0 0 chr12 25305000 25305104 -118977385 - FLAM_C SINE Alu -9 134 31 1396 193 53 19 chr12 25305107 25305428 -118977061 + Charlie1 DNA MER1_type 1520 1851 -910 1773 154 49 0 chr12 25305428 25305713 -118976776 - AluJb SINE Alu -13 299 1 1768 242 126 66 chr12 25305716 25307132 -118975357 - L1ME3A LINE L1 -772 5390 3768 4217 129 33 19 chr12 25307217 25307838 -118974651 - L1MA7 LINE L1 -4 6287 5655 2018 175 12 15 chr12 25307838 25308175 -118974314 + MER1B DNA MER1_type 2 337 0 4217 129 33 19 chr12 25308175 25308222 -118974267 - L1MA7 LINE L1 -636 5655 5610 211 70 23 23 chr12 25308222 25308265 -118974224 + (TTTAA)n Simple_repeat Simple_repeat 3 45 0 701 234 0 14 chr12 25308268 25308409 -118974080 - AluJo SINE Alu -50 262 124 474 155 134 0 chr12 25308427 25308524 -118973965 - L1MA7 LINE L1 -723 5568 5459 6569 140 19 24 chr12 25308664 25309737 -118972752 + L1M1 LINE L1 1250 2316 -5249 188 327 55 36 chr12 25310143 25310253 -118972236 + MIR SINE MIR 36 147 -61 208 277 62 0 chr12 25310403 25310468 -118972021 - MIR SINE MIR -141 121 53 2264 106 0 7 chr12 25310737 25311039 -118971450 - AluSx SINE Alu -12 300 1 578 212 120 32 chr12 25311048 25311265 -118971224 - MER20B DNA MER1_type -355 428 193 25 31 0 0 chr12 25311665 25311697 -118970792 + AT_rich Low_complexity Low_complexity 1 32 0 291 203 47 0 chr12 25311769 25311833 -118970656 + L2 LINE L2 3243 3309 -4 2243 78 0 7 chr12 25311943 25312260 -118970229 - AluY SINE Alu 0 315 1 1072 141 23 6 chr12 25312530 25312707 -118969782 - MER3 DNA MER1_type -28 181 2 22 0 0 0 chr12 25363724 25363746 -118918743 + AT_rich Low_complexity Low_complexity 1 22 0 2499 172 17 8 chr12 25363791 25364262 -118918227 - L1PA16 LINE L1 -17 6149 5675 1765 136 192 3 chr12 25365099 25365459 -118917030 - MSTA LTR MaLR 0 428 1 2253 167 10 5 chr12 25366485 25366886 -118915603 - MER57A LTR ERV1 0 403 1 277 51 51 0 chr12 25369009 25369048 -118913441 + L1MC2 LINE L1 6110 6150 -194 615 180 14 29 chr12 25369049 25369188 -118913301 + L1MC2 LINE L1 6196 6332 -12 224 227 280 13 chr12 25369599 25369674 -118912815 - MER5B DNA MER1_type -83 95 1 246 136 0 0 chr12 25369750 25369794 -118912695 + (TC)n Simple_repeat Simple_repeat 2 45 0 663 281 114 5 chr12 25369873 25369926 -118912563 + MIR SINE MIR 18 64 -198 1316 175 25 22 chr12 25369926 25370200 -118912289 + L1MC1 LINE L1 6059 6333 0 663 281 114 5 chr12 25370200 25370356 -118912133 + MIR SINE MIR 64 250 -12 320 249 205 44 chr12 25370363 25370554 -118911935 + MIR SINE MIR 6 233 -29 778 162 270 5 chr12 25370554 25370739 -118911750 - MER46A DNA MER2_type -2 234 1 320 249 205 44 chr12 25370739 25370752 -118911737 + MIR SINE MIR 233 243 -19 676 186 0 0 chr12 25371495 25371613 -118910876 - FLAM_C SINE Alu -11 122 5 254 261 63 85 chr12 25371697 25371885 -118910604 - MIR3 SINE MIR -71 191 4 29 28 0 0 chr12 25372017 25372053 -118910436 + AT_rich Low_complexity Low_complexity 1 36 0 1958 139 0 13 chr12 25372159 25372461 -118910028 - AluSx SINE Alu -14 298 1 2551 43 10 0 chr12 25372474 25372775 -118909714 - AluY SINE Alu -7 304 1 226 174 43 0 chr12 25372884 25372930 -118909559 - MLT1K LTR MaLR -2 586 539 2271 77 0 11 chr12 25372934 25373246 -118909243 - AluSp SINE Alu 0 309 1 2076 136 3 0 chr12 25373775 25374070 -118908419 - AluSx SINE Alu -16 296 1 198 0 0 0 chr12 25374170 25374192 -118908297 + (TAATG)n Simple_repeat Simple_repeat 4 25 0 508 199 84 15 chr12 25374737 25374868 -118907621 + MIR SINE MIR 97 236 -26 2091 104 32 29 chr12 25375463 25375771 -118906718 - AluSx SINE Alu -3 309 1 191 312 91 0 chr12 25377915 25377992 -118904497 - L2 LINE L2 -50 3222 3139 590 305 108 36 chr12 25378066 25378400 -118904089 + L2 LINE L2 2953 3310 -3 206 333 77 0 chr12 25379121 25379199 -118903290 - L2 LINE L2 -5 3267 3184 2194 93 45 0 chr12 25379665 25379955 -118902534 + AluSx SINE Alu 1 303 -9 636 208 12 6 chr12 25380244 25380412 -118902077 + CT-rich Low_complexity Low_complexity 4 172 0 1040 99 6 22 chr12 25380417 25380598 -118901891 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1680 176 3 11 chr12 25381501 25381785 -118900704 + AluJo SINE Alu 1 282 -30 398 19 0 19 chr12 25381788 25381840 -118900649 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1635 156 44 60 chr12 25383266 25383581 -118898908 + AluJb SINE Alu 1 310 -2 570 245 20 41 chr12 25383587 25383734 -118898755 + MIR SINE MIR 20 163 -99 24 0 0 0 chr12 25383784 25383808 -118898681 + AT_rich Low_complexity Low_complexity 1 24 0 2282 118 0 0 chr12 25383849 25384155 -118898334 - AluSx SINE Alu -6 306 1 186 226 151 19 chr12 25384331 25384384 -118898105 + MIR SINE MIR 84 143 -119 1096 153 0 0 chr12 25384794 25384964 -118897525 - FAM SINE Alu -1 174 5 2149 132 86 37 chr12 25385656 25385721 -118896768 - Tigger2a DNA MER2_type -2279 429 369 1947 168 0 0 chr12 25385721 25386025 -118896464 - AluJb SINE Alu -8 304 1 2149 132 86 37 chr12 25386025 25386270 -118896219 - Tigger2a DNA MER2_type -2339 369 92 198 0 0 0 chr12 25386270 25386292 -118896197 + (GGA)n Simple_repeat Simple_repeat 2 23 0 2149 132 86 37 chr12 25386292 25386389 -118896100 - Tigger2a DNA MER2_type -2616 92 1 354 45 0 0 chr12 25387575 25387619 -118894870 + (TTTTC)n Simple_repeat Simple_repeat 3 46 0 447 224 79 35 chr12 25387955 25387985 -118894504 - L1ME4a LINE L1 -95 6026 5999 2235 128 0 0 chr12 25387985 25388290 -118894199 - AluSq SINE Alu -8 305 1 447 224 79 35 chr12 25388290 25388326 -118894163 - L1ME4a LINE L1 -122 5999 5966 2103 116 0 3 chr12 25388326 25388668 -118893821 - AluSx SINE Alu 0 341 1 447 224 79 35 chr12 25388668 25388889 -118893600 - L1ME4a LINE L1 -155 5966 5724 813 161 0 0 chr12 25389340 25389464 -118893025 + FLAM_C SINE Alu 1 124 -9 2061 154 0 3 chr12 25389577 25389883 -118892606 - AluSx SINE Alu -7 305 1 5934 177 6 7 chr12 25390237 25391185 -118891304 + L1 LINE L1 4135 5082 -1064 1627 217 0 0 chr12 25391185 25391462 -118891027 - AluJb SINE Alu -35 277 1 5934 177 6 7 chr12 25391462 25391741 -118890748 + L1 LINE L1 5082 5360 -786 3797 139 43 26 chr12 25391727 25392235 -118890254 + L1MA4 LINE L1 5285 5783 -400 * 189 0 0 0 chr12 25392235 25392256 -118890233 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 225 0 0 0 chr12 25392255 25392280 -118890209 + (CA)n Simple_repeat Simple_repeat 2 26 0 3797 139 43 26 chr12 25392256 25392598 -118889891 + L1MA4 LINE L1 5783 6180 -3 1419 205 3 24 chr12 25392796 25393084 -118889405 + AluJo SINE Alu 5 286 -26 483 118 0 0 chr12 25393084 25393160 -118889329 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 2016 145 119 13 chr12 25393499 25393886 -118888603 - MSTA LTR MaLR 0 428 1 1729 157 32 32 chr12 25394018 25394145 -118888344 + AluJb SINE Alu 1 127 -185 252 0 0 0 chr12 25394145 25394173 -118888316 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1729 157 32 32 chr12 25394173 25394357 -118888132 + AluJb SINE Alu 126 312 0 279 306 31 31 chr12 25395655 25395753 -118886736 + L2 LINE L2 3175 3272 0 223 250 0 0 chr12 25397795 25397839 -118884650 + MIR3 SINE MIR 116 159 -49 686 295 26 34 chr12 25398229 25398463 -118884026 + MIR SINE MIR 12 243 -19 765 236 55 0 chr12 25398795 25398960 -118883529 - MER5A DNA MER1_type -14 175 2 238 217 170 47 chr12 25400020 25400126 -118882363 + L2 LINE L2 3150 3268 -4 1655 127 8 6 chr12 25400381 25400702 -118881787 + MER1B DNA MER1_type 59 339 0 203 179 0 0 chr12 25402554 25402593 -118879896 + A-rich Low_complexity Low_complexity 1 39 0 5935 98 13 6 chr12 25407475 25408385 -118874104 + L1MA1 LINE L1 5386 6302 0 216 0 0 0 chr12 25408608 25408632 -118873857 + (A)n Simple_repeat Simple_repeat 1 24 0 2402 87 3 0 chr12 25408656 25408956 -118873533 + AluSp SINE Alu 1 301 -12 2041 157 48 43 chr12 25409494 25409915 -118872574 + MLT2C2 LTR ERVL 2 424 -40 435 208 28 47 chr12 25412055 25412161 -118870328 + MER5A DNA MER1_type 9 112 -77 862 119 13 46 chr12 25412194 25412272 -118870217 - FAM SINE Alu -153 168 96 2463 135 3 3 chr12 25412272 25412636 -118869853 + THE1B LTR MaLR 1 364 0 862 119 13 46 chr12 25412636 25412708 -118869781 - FAM SINE Alu -225 96 23 2397 108 0 0 chr12 25412816 25413121 -118869368 + AluSg SINE Alu 1 305 -5 356 200 9 73 chr12 25413678 25413788 -118868701 - MER52A LTR ERV1 0 1755 1653 975 216 18 108 chr12 25413828 25414449 -118868040 - MER52A LTR ERV1 -140 894 283 211 288 55 14 chr12 25414587 25414660 -118867829 - L3b LINE CR1 -70 1513 1438 1714 164 68 4 chr12 25414747 25415028 -118867461 + AluJo SINE Alu 14 312 0 27 0 0 0 chr12 25415028 25415055 -118867434 + AT_rich Low_complexity Low_complexity 1 27 0 2075 112 28 3 chr12 25415441 25415728 -118866761 + AluSc SINE Alu 1 294 -15 1178 171 9 36 chr12 25415765 25415987 -118866502 - AluJb SINE Alu -10 302 87 242 208 21 0 chr12 25416198 25416246 -118866243 + L3b LINE CR1 1522 1570 -13 771 318 120 21 chr12 25417102 25417536 -118864953 + L2 LINE L2 2820 3296 -17 189 171 0 0 chr12 25417543 25417578 -118864911 + A-rich Low_complexity Low_complexity 1 35 0 819 148 8 0 chr12 25417610 25417732 -118864757 - AluJb SINE Alu -181 131 9 640 168 40 27 chr12 25417999 25418148 -118864341 - L1MD1 LINE L1 -13 6229 6079 31 26 0 0 chr12 25418243 25418281 -118864208 + AT_rich Low_complexity Low_complexity 1 38 0 854 257 67 45 chr12 25418689 25419063 -118863426 + MLT1I LTR MaLR 26 407 -2 1396 164 6 75 chr12 25420521 25420754 -118861735 - L1MC2 LINE L1 0 6344 6141 1724 53 5 0 chr12 25420754 25420961 -118861528 - AluY SINE Alu -18 293 86 1396 164 6 75 chr12 25420961 25421075 -118861414 - L1MC2 LINE L1 -203 6141 6021 371 303 181 0 chr12 25421245 25421400 -118861089 + MIR SINE MIR 80 262 0 444 176 132 38 chr12 25421443 25421602 -118860887 + L1MD2 LINE L1 6125 6298 -61 1350 166 0 22 chr12 25421602 25421825 -118860664 - AluJo SINE Alu -8 304 87 338 91 45 0 chr12 25421825 25421891 -118860598 + L1MD2 LINE L1 6288 6356 -3 516 32 0 0 chr12 25423975 25424037 -118858452 + (CA)n Simple_repeat Simple_repeat 2 63 0 35 54 0 0 chr12 25426381 25426437 -118856052 + AT_rich Low_complexity Low_complexity 1 56 0 2425 73 0 7 chr12 25426870 25427173 -118855316 + AluSq SINE Alu 1 301 -12 914 185 0 22 chr12 25427729 25427907 -118854582 + FAM SINE Alu 1 174 -1 240 250 0 29 chr12 25428798 25428866 -118853623 + LTR33A LTR ERVL 452 517 -6 386 306 134 25 chr12 25429295 25429690 -118852799 - LTR16A LTR ERVL -10 440 3 415 286 17 17 chr12 25430113 25430232 -118852257 - MIR SINE MIR -108 154 36 537 286 56 0 chr12 25430292 25430453 -118852036 - MIR SINE MIR -73 189 20 25 0 0 0 chr12 25430525 25430550 -118851939 + AT_rich Low_complexity Low_complexity 1 25 0 288 371 0 8 chr12 25430780 25430904 -118851585 + MER5B DNA MER1_type 7 129 -49 1137 147 0 37 chr12 25431414 25431605 -118850884 - AluJb SINE Alu -5 307 124 434 377 31 9 chr12 25432201 25432424 -118850065 - MIR SINE MIR -29 233 6 289 319 111 7 chr12 25432606 25432750 -118849739 + MIR SINE MIR 98 256 -6 225 307 63 24 chr12 25432863 25432990 -118849499 + L3 LINE CR1 1445 1576 -1 858 291 99 24 chr12 25433390 25433764 -118848725 - MLT1J2 LTR MaLR -45 405 4 433 286 71 76 chr12 25433771 25433818 -118848671 - L1ME LINE L1 -391 5730 5684 2421 91 0 9 chr12 25433818 25434160 -118848329 - L1PA8A LINE L1 -1 6130 5792 433 286 71 76 chr12 25434160 25434350 -118848139 - L1ME LINE L1 -437 5684 5494 215 280 0 0 chr12 25435180 25435230 -118847259 + (TG)n Simple_repeat Simple_repeat 1 50 0 1822 175 57 95 chr12 25435566 25436091 -118846398 + MLT1D LTR MaLR 1 505 0 1432 184 24 51 chr12 25436831 25437124 -118845365 - AluJo SINE Alu -26 286 2 205 161 0 0 chr12 25439001 25439032 -118843457 + polypyrimidine Low_complexity Low_complexity 2 32 0 199 406 62 0 chr12 25439574 25439670 -118842819 + L2 LINE L2 2961 3062 -210 180 152 0 0 chr12 25440351 25440384 -118842105 + A-rich Low_complexity Low_complexity 1 33 0 315 193 18 0 chr12 25441157 25441214 -118841275 - L2 LINE L2 -4 3309 3252 2254 110 30 36 chr12 25441227 25441592 -118840897 + THE1B LTR MaLR 1 363 -1 1437 188 30 30 chr12 25441593 25441843 -118840646 + MER2 DNA MER2_type 10 262 -83 921 145 0 36 chr12 25441843 25442009 -118840480 - L1PA16 LINE L1 -1 6165 6006 1437 188 30 30 chr12 25442009 25442094 -118840395 + MER2 DNA MER2_type 261 345 0 326 200 14 14 chr12 25442096 25442166 -118840323 - L2 LINE L2 -61 3252 3183 1347 226 141 3 chr12 25442168 25442558 -118839931 - L2 LINE L2 -415 2899 2456 277 356 15 15 chr12 25442576 25442708 -118839781 - L2 LINE L2 -1484 1830 1699 310 104 0 0 chr12 25442717 25442765 -118839724 - Alu SINE Alu -8 294 247 1067 148 0 0 chr12 25442765 25442914 -118839575 - AluSq/x SINE Alu -164 149 1 660 257 18 37 chr12 25442920 25443138 -118839351 - L2 LINE L2 -1619 1695 1482 206 275 11 88 chr12 25443369 25443460 -118839029 + MIR SINE MIR 129 212 -50 722 254 116 65 chr12 25443508 25443878 -118838611 + L2 LINE L2 2923 3311 -2 302 144 11 44 chr12 25444807 25444897 -118837592 + CT-rich Low_complexity Low_complexity 2 88 0 405 270 158 26 chr12 25445394 25445546 -118836943 + L2 LINE L2 3101 3272 0 1186 164 41 0 chr12 25446805 25447049 -118835440 + L1MA8 LINE L1 6028 6281 -10 2037 131 16 41 chr12 25447663 25448024 -118834465 + AluJb SINE Alu 1 353 0 1399 110 14 10 chr12 25448215 25448424 -118834065 - AluSg/x SINE Alu -5 307 98 336 277 149 7 chr12 25448502 25448643 -118833846 - LTR16C LTR ERVL -19 472 312 353 271 127 44 chr12 25449647 25449701 -118832788 - MIR SINE MIR -10 252 204 3146 196 28 6 chr12 25449701 25450339 -118832150 + MER82 DNA MER2_type 1 652 -1 353 271 127 44 chr12 25450339 25450465 -118832024 - MIR SINE MIR -58 204 57 298 158 79 30 chr12 25450494 25450595 -118831894 - L1MC5 LINE L1 -216 7745 7640 1328 140 40 35 chr12 25450745 25450973 -118831516 + AluJo SINE Alu 34 262 -50 500 90 26 0 chr12 25450973 25451051 -118831438 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 397 250 64 21 chr12 25451926 25452066 -118830423 + L2 LINE L2 3159 3304 -9 410 251 157 27 chr12 25452642 25452865 -118829624 - LTR16A LTR ERVL -93 357 106 2282 107 0 0 chr12 25453015 25453313 -118829176 - AluSx SINE Alu -14 298 1 501 301 115 5 chr12 25453818 25454027 -118828462 + MIR SINE MIR 4 235 -27 181 302 0 0 chr12 25455271 25455314 -118827175 - L2 LINE L2 -20 3293 3251 * 188 179 0 0 chr12 25455289 25455317 -118827172 - MIR SINE MIR -32 230 203 189 0 0 0 chr12 25455657 25455678 -118826811 + (TTA)n Simple_repeat Simple_repeat 2 22 0 183 129 0 0 chr12 25456813 25456844 -118825645 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 202 273 15 45 chr12 25457400 25457466 -118825023 - L2 LINE L2 -10 3262 3199 185 319 222 0 chr12 25457574 25457709 -118824780 - L2 LINE L2 -221 3051 2887 2039 158 0 0 chr12 25457713 25458023 -118824466 - AluSx SINE Alu -2 310 1 277 350 73 17 chr12 25458954 25459131 -118823358 - MER5A DNA MER1_type -2 187 1 2033 177 7 68 chr12 25462814 25462896 -118819593 - MLT2D LTR ERVL 0 414 329 546 16 0 0 chr12 25462896 25462959 -118819530 + (TA)n Simple_repeat Simple_repeat 2 64 0 405 0 0 0 chr12 25462958 25463003 -118819486 + (GA)n Simple_repeat Simple_repeat 2 46 0 * 2033 177 7 68 chr12 25462959 25463361 -118819128 - MLT2D LTR ERVL -85 329 1 1635 310 140 52 chr12 25464086 25464783 -118817706 - L2 LINE L2 -6 3307 2673 1498 181 0 69 chr12 25464783 25465115 -118817374 + AluJb SINE Alu 1 311 0 1635 310 140 52 chr12 25465115 25465888 -118816601 - L2 LINE L2 -640 2673 1724 513 170 19 0 chr12 25467194 25467300 -118815189 - L1MB8 LINE L1 -6 6172 6065 201 314 29 0 chr12 25467913 25467983 -118814506 - MIR SINE MIR 0 262 191 192 158 0 0 chr12 25468292 25468330 -118814159 + A-rich Low_complexity Low_complexity 1 38 0 337 294 120 43 chr12 25469222 25469406 -118813083 - MIR SINE MIR 0 262 65 23 33 0 0 chr12 25469474 25469504 -118812985 + AT_rich Low_complexity Low_complexity 1 30 0 1519 252 80 10 chr12 25470145 25470633 -118811856 - L1ME3A LINE L1 0 6170 5649 21 36 0 0 chr12 25471351 25471379 -118811110 + AT_rich Low_complexity Low_complexity 1 28 0 753 83 0 0 chr12 25471386 25471507 -118810982 - AluSp/q SINE Alu 0 308 188 950 195 53 0 chr12 25471851 25472077 -118810412 - L1MA4 LINE L1 -1 6299 6062 221 242 32 32 chr12 25473076 25473138 -118809351 - L3 LINE CR1 -1 1576 1515 203 305 39 97 chr12 25473494 25473580 -118808909 + MIR SINE MIR 118 193 -69 2032 128 3 0 chr12 25473580 25473869 -118808620 - AluSx SINE Alu -1 311 22 203 305 39 97 chr12 25473869 25473936 -118808553 + MIR SINE MIR 193 262 0 411 334 50 53 chr12 25474052 25474218 -118808271 - L2 LINE L2 -8 3305 3139 1877 164 0 0 chr12 25474218 25474510 -118807979 - AluJb SINE Alu -18 294 3 411 334 50 53 chr12 25474510 25474663 -118807826 - L2 LINE L2 -174 3139 2987 23 0 0 0 chr12 25475535 25475558 -118806931 + AT_rich Low_complexity Low_complexity 1 23 0 405 292 65 7 chr12 25476222 25476376 -118806113 - MIR SINE MIR -45 217 55 189 0 0 0 chr12 25476379 25476400 -118806089 + (T)n Simple_repeat Simple_repeat 1 21 0 2175 95 26 7 chr12 25476773 25477079 -118805410 - AluSx SINE Alu 0 312 1 262 267 147 0 chr12 25478553 25478628 -118803861 + MIR3 SINE MIR 112 197 -11 285 250 70 30 chr12 25479052 25479152 -118803337 - MIR3 SINE MIR -2 206 103 225 159 0 0 chr12 25479368 25479412 -118803077 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 294 225 113 0 chr12 25479422 25479493 -118802996 + MIR SINE MIR 178 256 -6 396 0 0 0 chr12 25480620 25480664 -118801825 + (TC)n Simple_repeat Simple_repeat 1 44 0 333 0 0 0 chr12 25480663 25480700 -118801789 + (CA)n Simple_repeat Simple_repeat 1 37 0 * 182 228 18 35 chr12 25481247 25481304 -118801185 - L2 LINE L2 0 3313 3258 1149 241 79 6 chr12 25482423 25482738 -118799751 - LTR40a LTR ERVL 0 519 182 1704 249 49 90 chr12 25482746 25483778 -118798711 - HERVL40 LTR ERVL -4442 1088 8 2196 226 27 16 chr12 25483786 25484299 -118798190 - LTR40a LTR ERVL 0 519 1 338 298 47 74 chr12 25484997 25485212 -118797277 + MIR SINE MIR 43 251 -11 261 324 71 37 chr12 25487032 25487195 -118795294 + MIR3 SINE MIR 2 175 -33 230 246 140 9 chr12 25487241 25487355 -118795134 - MER103 DNA DNA 0 166 38 751 150 0 64 chr12 25487369 25487509 -118794980 - FLAM_C SINE Alu -1 132 2 201 260 40 0 chr12 25487601 25487651 -118794838 + MIR3 SINE MIR 151 202 -6 191 195 24 0 chr12 25487786 25487827 -118794662 + MIR3 SINE MIR 167 208 0 2314 78 3 0 chr12 25487874 25488170 -118794319 - AluY SINE Alu -14 297 1 21 36 0 0 chr12 25488567 25488595 -118793894 + AT_rich Low_complexity Low_complexity 1 28 0 199 271 29 43 chr12 25489071 25489141 -118793348 + L2 LINE L2 3234 3302 -11 242 333 11 35 chr12 25489366 25489453 -118793036 - L2 LINE L2 -2 3270 3186 180 111 0 0 chr12 25489493 25489520 -118792969 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 671 303 65 57 chr12 25489520 25489887 -118792602 - L2 LINE L2 -13 3300 2931 1871 169 23 6 chr12 25489912 25490266 -118792223 - MLT1A1 LTR MaLR -5 360 1 284 228 41 81 chr12 25491975 25492098 -118790391 + MIR SINE MIR 80 197 -65 2468 110 30 3 chr12 25492129 25492492 -118789997 + THE1C LTR MaLR 3 375 0 1038 232 29 20 chr12 25493313 25493559 -118788930 - MIR SINE MIR 0 262 15 180 324 15 29 chr12 25493564 25493632 -118788857 - MIR SINE MIR -125 137 71 2514 261 98 31 chr12 25493862 25494336 -118788153 - MER69B DNA AcHobo -1327 1199 758 2186 111 71 31 chr12 25494336 25494686 -118787803 - THE1B LTR MaLR 0 364 1 2514 261 98 31 chr12 25494686 25495168 -118787321 - MER69B DNA AcHobo -1768 758 157 1500 186 24 90 chr12 25495168 25495502 -118786987 - AluJb SINE Alu 0 312 1 2514 261 98 31 chr12 25495502 25495652 -118786837 - MER69B DNA AcHobo -2369 157 18 286 382 0 0 chr12 25496186 25496288 -118786201 + L2 LINE L2 3211 3312 -1 2162 190 26 42 chr12 25496347 25496846 -118785643 - MLT1D LTR MaLR -10 495 5 249 163 0 0 chr12 25497422 25497465 -118785024 + L2 LINE L2 3267 3309 -4 236 228 0 18 chr12 25498223 25498280 -118784209 - L2 LINE L2 -2 3311 3256 2005 118 46 26 chr12 25498968 25499274 -118783215 - AluJb SINE Alu 0 312 1 244 281 0 0 chr12 25499290 25499347 -118783142 + (CA)n Simple_repeat Simple_repeat 2 58 0 287 320 0 0 chr12 25499628 25499706 -118782783 + MIR SINE MIR 44 121 -87 877 201 108 12 chr12 25502297 25502546 -118779943 + L1ME2 LINE L1 5881 6153 -11 401 91 30 0 chr12 25502676 25502742 -118779747 + CT-rich Low_complexity Low_complexity 4 71 0 240 35 0 0 chr12 25502750 25502779 -118779710 + (TTCC)n Simple_repeat Simple_repeat 2 30 0 632 305 81 42 chr12 25502809 25503070 -118779419 - LTR33 LTR ERVL -20 501 211 2376 91 7 0 chr12 25503070 25503378 -118779111 + AluSq SINE Alu 1 310 -3 632 305 81 42 chr12 25503378 25503595 -118778894 - LTR33 LTR ERVL -310 211 4 183 326 47 23 chr12 25504592 25504678 -118777811 + L2 LINE L2 3137 3224 -48 22 0 0 0 chr12 25505022 25505044 -118777445 + AT_rich Low_complexity Low_complexity 1 22 0 2245 123 7 0 chr12 25505049 25505358 -118777131 - AluSx SINE Alu -1 311 1 213 311 0 0 chr12 25505681 25505742 -118776747 - MIR SINE MIR -74 188 128 278 226 0 0 chr12 25505767 25505820 -118776669 - L2 LINE L2 -5 3267 3215 21 57 0 0 chr12 25506728 25506763 -118775726 + AT_rich Low_complexity Low_complexity 1 35 0 269 247 49 12 chr12 25506834 25506915 -118775574 - MIR SINE MIR -13 249 166 1733 304 110 35 chr12 25506958 25507053 -118775436 - L2 LINE L2 0 3313 3227 2075 130 39 0 chr12 25507053 25507337 -118775152 + AluSg SINE Alu 1 295 -15 1733 304 110 35 chr12 25507337 25508546 -118773943 - L2 LINE L2 -86 3227 1901 247 321 143 0 chr12 25508596 25508680 -118773809 - MIR SINE MIR -136 126 31 201 213 0 0 chr12 25509191 25509238 -118773251 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 381 301 35 52 chr12 25509398 25509571 -118772918 + L2 LINE L2 2124 2293 -1021 698 273 22 6 chr12 25509940 25510123 -118772366 - MIR SINE MIR -65 197 12 1290 227 108 21 chr12 25510251 25510304 -118772185 + Charlie4a DNA MER1_type 25 72 -1889 1848 157 13 0 chr12 25510304 25510604 -118771885 - 7SLRNA srpRNA srpRNA -16 304 1 1290 227 108 21 chr12 25510604 25510977 -118771512 + Charlie4a DNA MER1_type 72 488 -20 238 354 42 59 chr12 25510987 25511224 -118771265 - L3 LINE CR1 -44 1533 1301 234 324 77 33 chr12 25512945 25513127 -118769362 + L2 LINE L2 2004 2193 -1121 356 349 60 57 chr12 25513347 25513929 -118768560 - L2 LINE L2 -1578 1736 1153 1951 184 72 8 chr12 25514019 25514421 -118768068 - MSTA LTR MaLR 0 428 1 335 221 5 69 chr12 25514473 25514534 -118767955 - L1ME1 LINE L1 -22 6142 6095 2272 87 0 7 chr12 25514534 25514833 -118767656 - AluY SINE Alu -14 297 1 335 221 5 69 chr12 25514833 25514901 -118767588 - L1ME1 LINE L1 -69 6095 6024 312 296 16 16 chr12 25514895 25515020 -118767469 - L1MEc LINE L1 -4566 1830 1706 * 2338 112 0 0 chr12 25515023 25515335 -118767154 - AluSx SINE Alu 0 312 1 4657 162 33 9 chr12 25515644 25516848 -118765641 - L1MA10 LINE L1 0 6334 4963 236 240 450 0 chr12 25521960 25522089 -118760400 + MIR SINE MIR 47 233 -29 340 312 24 71 chr12 25522110 25522280 -118760209 - L2 LINE L2 0 3313 3152 499 306 68 28 chr12 25522574 25522822 -118759667 + MIR SINE MIR 2 259 -3 403 257 40 47 chr12 25523221 25523369 -118759120 + MLT1I LTR MaLR 1 147 -262 426 353 81 4 chr12 25524730 25525002 -118757487 - L2 LINE L2 -453 2861 2569 222 325 117 26 chr12 25525010 25525241 -118757248 - L2 LINE L2 -1064 2250 1999 2158 100 3 29 chr12 25525257 25525567 -118756922 + AluY SINE Alu 3 304 -7 36 0 0 0 chr12 25525623 25525659 -118756830 + AT_rich Low_complexity Low_complexity 1 36 0 1412 142 54 23 chr12 25525701 25525733 -118756756 - L1PA16 LINE L1 0 6166 6136 2018 198 54 5 chr12 25525733 25526138 -118756351 + MSTB LTR MaLR 2 426 0 1412 142 54 23 chr12 25526138 25526365 -118756124 - L1PA16 LINE L1 -30 6136 5899 475 328 165 26 chr12 25526378 25526906 -118755583 - L2 LINE L2 -1387 1927 1327 298 345 101 52 chr12 25529791 25530098 -118752391 - L2 LINE L2 0 3272 2951 328 310 139 8 chr12 25530276 25530405 -118752084 - MLT1K LTR MaLR -67 521 376 280 281 0 0 chr12 25530611 25530668 -118751821 - L2 LINE L2 -1 3312 3256 397 313 88 0 chr12 25530740 25530922 -118751567 - MER113 DNA MER1_type? 0 521 324 25 51 0 0 chr12 25530990 25531029 -118751460 + AT_rich Low_complexity Low_complexity 1 39 0 281 301 70 20 chr12 25531063 25531262 -118751227 - MER113 DNA MER1_type? -302 219 11 9173 79 3 0 chr12 25531504 25533514 -118748975 + L1PA7 LINE L1 4136 6150 -4 189 213 0 0 chr12 25537265 25537312 -118745177 + (CA)n Simple_repeat Simple_repeat 2 48 0 617 337 28 20 chr12 25537374 25537629 -118744860 - MIR SINE MIR 0 262 6 479 283 102 16 chr12 25539336 25539523 -118742966 - Charlie8 DNA MER1_type -2160 257 55 2249 113 3 0 chr12 25539531 25539833 -118742656 + AluSx SINE Alu 1 303 -9 227 327 0 0 chr12 25540071 25540123 -118742366 - L2 LINE L2 -8 3264 3213 1438 187 14 103 chr12 25540376 25540775 -118741714 + MLT1A1 LTR MaLR 1 423 -3 950 135 119 0 chr12 25540945 25541130 -118741359 - Tigger4(Zombi) DNA MER2_type -2 2729 2523 331 184 276 10 chr12 25541124 25541222 -118741267 - Tigger4(Zombi) DNA MER2_type -2607 124 1 * 276 209 42 112 chr12 25541281 25541496 -118740993 - L1ME3A LINE L1 -219 5951 5752 255 257 53 9 chr12 25541513 25541626 -118740863 - L1ME LINE L1 -361 5801 5684 484 160 0 112 chr12 25541631 25541756 -118740733 - MLT2B1 LTR ERVL 0 520 410 1366 167 12 4 chr12 25542051 25542302 -118740187 - L1M2 LINE L1 -681 5631 5379 1568 189 112 0 chr12 25542307 25542630 -118739859 - MER47A DNA MER2_type -6 360 2 2833 175 27 0 chr12 25542636 25543196 -118739293 - L1M2 LINE L1 -769 5377 4803 1093 287 83 16 chr12 25543419 25543851 -118738638 + L2 LINE L2 1397 1857 -1457 1939 250 150 18 chr12 25543890 25544374 -118738115 + L1ME LINE L1 6 425 -5645 612 27 0 0 chr12 25544374 25544448 -118738041 + (CAAAG)n Simple_repeat Simple_repeat 1 74 0 1939 250 150 18 chr12 25544448 25544735 -118737754 + L1ME LINE L1 425 879 -5191 4334 157 62 5 chr12 25544838 25545667 -118736822 + L1MA3 LINE L1 5430 6305 0 326 316 53 0 chr12 25545692 25545806 -118736683 + MIR3 SINE MIR 72 191 -17 228 67 0 0 chr12 25547135 25547165 -118735324 + (TG)n Simple_repeat Simple_repeat 1 30 0 2195 103 13 10 chr12 25547566 25547877 -118734612 - AluSq SINE Alu -1 312 1 1533 141 8 27 chr12 25547879 25548142 -118734347 - AluJb SINE Alu -22 290 33 509 189 136 18 chr12 25548425 25548594 -118733895 + MER53 DNA DNA 1 189 0 183 80 0 0 chr12 25549296 25549321 -118733168 + (CA)n Simple_repeat Simple_repeat 1 25 0 324 308 58 29 chr12 25550277 25550449 -118732040 + MER5B DNA MER1_type 1 177 -1 1043 208 193 41 chr12 25551153 25551547 -118730942 - MLT2B1 LTR ERVL -64 456 3 909 242 103 67 chr12 25551594 25551669 -118730820 - L1ME LINE L1 -528 5636 5565 2252 101 0 3 chr12 25551669 25551966 -118730523 - AluSg SINE Alu -13 297 2 909 242 103 67 chr12 25551966 25552494 -118729995 - L1ME LINE L1 -599 5565 5057 1686 158 6 35 chr12 25552494 25552805 -118729684 + AluJo SINE Alu 9 310 -2 909 242 103 67 chr12 25552805 25552820 -118729669 - L1ME LINE L1 -1107 5057 5044 5067 45 3 10 chr12 25552820 25553417 -118729072 + SVA Other Other 794 1386 0 909 242 103 67 chr12 25553417 25553827 -118728662 - L1ME LINE L1 -1120 5044 4568 1411 213 4 4 chr12 25553847 25554110 -118728379 + AluJo SINE Alu 1 263 -49 321 349 42 12 chr12 25554140 25554472 -118728017 - L1ME LINE L1 -1601 4545 4204 519 262 53 39 chr12 25554560 25554919 -118727570 - L1ME LINE L1 -2929 3217 2854 22 0 0 0 chr12 25555058 25555080 -118727409 + AT_rich Low_complexity Low_complexity 1 22 0 7421 162 11 24 chr12 25555285 25556761 -118725728 - L1 LINE L1 -1307 5799 4343 1807 237 38 40 chr12 25556741 25557719 -118724770 - L1 LINE L1 -4805 2232 6 * 3085 235 53 15 chr12 25557946 25559095 -118723394 + L1ME1 LINE L1 4968 6162 -4 2130 194 9 13 chr12 25559217 25559776 -118722713 + L1M1 LINE L1 4911 5471 -743 570 204 204 6 chr12 25560156 25560318 -118722171 - MIR SINE MIR 0 262 69 1337 190 43 23 chr12 25560318 25560692 -118721797 - MSTB2 LTR MaLR 0 457 1 240 228 88 0 chr12 25560692 25560749 -118721740 - MIR SINE MIR -189 73 12 842 285 25 63 chr12 25561113 25561510 -118720979 + LTR16B LTR ERVL 81 462 -2 2233 110 0 3 chr12 25561797 25562106 -118720383 - AluSg SINE Alu -2 308 1 1115 226 12 20 chr12 25562538 25562790 -118719699 + MIR SINE MIR 2 251 -11 202 140 20 20 chr12 25562820 25562870 -118719619 + (TA)n Simple_repeat Simple_repeat 1 50 0 186 133 0 0 chr12 25562934 25562964 -118719525 + (CA)n Simple_repeat Simple_repeat 2 31 0 632 265 50 40 chr12 25563188 25563388 -118719101 + MIR SINE MIR 49 250 -12 267 31 0 0 chr12 25564062 25564094 -118718395 + (CAA)n Simple_repeat Simple_repeat 2 33 0 373 249 90 90 chr12 25566140 25566304 -118716185 + HAL1 LINE L1 2121 2287 -220 2890 6 0 0 chr12 25566304 25566616 -118715873 - AluYb8 SINE Alu -6 312 1 373 249 90 90 chr12 25566616 25566696 -118715793 + HAL1 LINE L1 2286 2365 -142 459 308 41 0 chr12 25567139 25567285 -118715204 - MIR SINE MIR -19 243 92 622 343 100 23 chr12 25567820 25568536 -118713953 + L2 LINE L2 2538 3313 0 554 297 151 5 chr12 25569133 25569352 -118713137 + MIR SINE MIR 5 255 -7 324 148 0 0 chr12 25572909 25572970 -118709519 + (TG)n Simple_repeat Simple_repeat 2 62 0 25 0 0 0 chr12 25573166 25573191 -118709298 + GC_rich Low_complexity Low_complexity 1 25 0 194 79 0 26 chr12 25573194 25573232 -118709257 + (CGGGGG)n Simple_repeat Simple_repeat 5 41 0 444 19 0 0 chr12 25573943 25573996 -118708493 + (CA)n Simple_repeat Simple_repeat 1 53 0 344 271 60 42 chr12 25574228 25574394 -118708095 - MLT1I LTR MaLR -151 258 90 1567 196 0 0 chr12 25574767 25575033 -118707456 - AluJo SINE Alu -46 266 1 2388 51 6 25 chr12 25575057 25575372 -118707117 + AluSc SINE Alu 1 309 0 210 37 0 0 chr12 25576430 25576457 -118706032 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 28 29 0 0 chr12 25576812 25576847 -118705642 + AT_rich Low_complexity Low_complexity 1 35 0 2087 45 52 11 chr12 25577030 25577299 -118705190 + AluY SINE Alu 1 280 -31 239 0 32 0 chr12 25577307 25577338 -118705151 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 25 0 0 0 chr12 25577533 25577558 -118704931 + AT_rich Low_complexity Low_complexity 1 25 0 333 0 0 0 chr12 25577585 25577622 -118704867 + (TC)n Simple_repeat Simple_repeat 2 38 0 216 0 0 0 chr12 25577621 25577645 -118704844 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 246 32 0 0 chr12 25577644 25577675 -118704814 + (GA)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr12 25577714 25577739 -118704750 + AT_rich Low_complexity Low_complexity 1 25 0 2306 56 0 69 chr12 25577878 25578197 -118704292 - AluY SINE Alu -14 297 1 3602 53 2 7 chr12 25580531 25581014 -118701475 + L1PA7 LINE L1 5686 6166 0 227 216 52 93 chr12 25581208 25581305 -118701184 + MIR SINE MIR 106 198 -64 * 368 281 74 30 chr12 25581297 25581432 -118701057 - MIR SINE MIR -6 256 116 387 315 60 0 chr12 25585483 25585499 -118696990 + MIR SINE MIR 100 114 -148 1961 137 3 43 chr12 25585499 25585821 -118696668 - AluSc SINE Alu 0 309 1 387 315 60 0 chr12 25585821 25585953 -118696536 + MIR SINE MIR 114 257 -5 1069 272 117 2 chr12 25586683 25587084 -118695405 - LTR16B LTR ERVL 0 464 18 241 268 98 0 chr12 25587237 25587319 -118695170 + MIR SINE MIR 110 199 -63 184 311 214 10 chr12 25589334 25589437 -118693052 + L2 LINE L2 3143 3266 -6 482 256 151 19 chr12 25589501 25589723 -118692766 - MIR SINE MIR -6 256 6 207 275 14 29 chr12 25589756 25589825 -118692664 + MIR SINE MIR 125 192 -70 1293 189 20 96 chr12 25589868 25590212 -118692277 - AluYb8 SINE Alu 0 318 1 485 278 16 26 chr12 25590386 25590577 -118691912 + MER5A DNA MER1_type 1 189 0 1546 308 95 63 chr12 25591191 25592247 -118690242 + L3 LINE CR1 459 1547 -30 350 354 133 0 chr12 25592252 25592478 -118690011 + MIR SINE MIR 1 256 -6 276 311 15 7 chr12 25593129 25593264 -118689225 + (TA)n Simple_repeat Simple_repeat 2 137 0 651 233 7 0 chr12 25593289 25593435 -118689054 + MER45A DNA AcHobo 12 158 -20 223 71 48 0 chr12 25593609 25593651 -118688838 + (TA)n Simple_repeat Simple_repeat 1 44 0 1833 188 0 0 chr12 25593652 25593940 -118688549 - AluJb SINE Alu -22 290 3 30 59 0 0 chr12 25593996 25594047 -118688442 + AT_rich Low_complexity Low_complexity 1 51 0 1721 135 35 19 chr12 25594163 25594475 -118688014 - MER2 DNA MER2_type 0 345 29 2216 125 0 0 chr12 25594662 25594966 -118687523 - AluY SINE Alu -7 304 1 1879 249 33 30 chr12 25596269 25597869 -118684620 - L1MCa LINE L1 -2230 4334 2550 271 174 0 0 chr12 25597871 25597917 -118684572 - MER8 DNA MER2_type 0 239 194 626 217 87 25 chr12 25597936 25598097 -118684392 + MIR SINE MIR 82 252 -10 869 85 78 0 chr12 25598309 25598438 -118684051 - MER85 DNA T2_type 0 139 1 203 59 0 29 chr12 25598669 25598703 -118683786 + (TGGGGG)n Simple_repeat Simple_repeat 4 36 0 2372 143 7 24 chr12 25599905 25600324 -118682165 + Tigger2a DNA MER2_type 23 434 0 1502 215 98 64 chr12 25600324 25600540 -118681949 - L1MCa LINE L1 -4015 2549 2342 7824 19 0 0 chr12 25600540 25602220 -118680269 - L1PA3 LINE L1 0 6155 4476 1502 215 98 64 chr12 25602220 25602893 -118679596 - L1MCa LINE L1 -4222 2342 1692 1485 218 62 25 chr12 25602902 25603302 -118679187 - MLT1C LTR MaLR 0 467 53 2439 192 37 13 chr12 25603342 25604236 -118678253 - L1MCa LINE L1 -4852 1193 570 1202 194 85 118 chr12 25604336 25604929 -118677560 - L1MCa LINE L1 -5483 562 64 796 220 11 32 chr12 25605105 25605291 -118677198 + MIR SINE MIR 75 256 -6 1216 127 52 38 chr12 25606952 25607164 -118675325 - AluJo SINE Alu -16 296 82 212 305 8 99 chr12 25607201 25607332 -118675157 + L2 LINE L2 3180 3298 -15 738 303 61 44 chr12 25607609 25607811 -118674678 + LTR16B LTR ERVL 34 231 -233 2115 137 126 8 chr12 25607811 25608192 -118674297 + MSTA LTR MaLR 1 426 -2 738 303 61 44 chr12 25608192 25608401 -118674088 + LTR16B LTR ERVL 231 452 -12 311 319 49 12 chr12 25608404 25608567 -118673922 + L2 LINE L2 2568 2736 -578 238 306 47 80 chr12 25608610 25608885 -118673604 + L2 LINE L2 2824 3089 -183 233 253 106 73 chr12 25609070 25609343 -118673146 - MLT1K LTR MaLR -123 465 184 478 313 68 43 chr12 25609565 25610035 -118672454 - MLT1J LTR MaLR -19 492 11 963 229 243 14 chr12 25610292 25610659 -118671830 - LTR40c LTR ERVL -12 453 3 2223 237 61 26 chr12 25610663 25611316 -118671173 - HERVL40 LTR ERVL -2 5528 4853 858 214 0 22 chr12 25611337 25611519 -118670970 - FRAM SINE Alu -3 173 1 1150 286 48 45 chr12 25611647 25612228 -118670261 - HERVL40 LTR ERVL -786 4744 4162 1018 201 63 17 chr12 25612236 25612475 -118670014 - LTR40c LTR ERVL -211 254 5 183 184 26 0 chr12 25612705 25612743 -118669746 + L2 LINE L2 3256 3294 -19 247 274 263 6 chr12 25612935 25613110 -118669379 - L3b LINE CR1 -251 1332 1113 225 0 0 0 chr12 25614925 25614950 -118667539 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6138 140 42 12 chr12 25615291 25616421 -118666068 - Tigger3b DNA MER2_type -66 1165 2 1018 243 83 46 chr12 25616463 25616982 -118665507 - L1MC5 LINE L1 -408 7553 7016 296 297 22 7 chr12 25617347 25617485 -118665004 - L1MEc LINE L1 -6206 190 51 799 284 13 7 chr12 25617492 25617758 -118664731 - L1MC5 LINE L1 -1093 6942 6643 707 279 18 14 chr12 25617784 25618006 -118664483 + L2 LINE L2 1815 2037 -1277 2082 292 41 27 chr12 25618006 25618589 -118663900 + L2 LINE L2 2295 2868 -445 243 0 0 0 chr12 25618589 25618616 -118663873 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2122 94 7 0 chr12 25618617 25618894 -118663595 - AluY SINE Alu -32 279 1 2082 292 41 27 chr12 25618894 25619018 -118663471 + L2 LINE L2 2867 3015 -298 294 260 10 50 chr12 25619021 25619121 -118663368 + L2 LINE L2 3120 3215 -98 393 254 173 0 chr12 25619175 25619285 -118663204 - L2 LINE L2 -12 3260 3132 322 273 73 0 chr12 25619434 25619544 -118662945 + MIR SINE MIR 68 185 -77 227 313 84 56 chr12 25620147 25620259 -118662230 - LTR16C LTR ERVL 0 491 371 1489 193 144 23 chr12 25620259 25620612 -118661877 - MSTD LTR MaLR 0 396 1 227 313 84 56 chr12 25620612 25620678 -118661811 - LTR16C LTR ERVL -120 371 308 450 354 85 5 chr12 25621146 25621358 -118661131 - L3 LINE CR1 -14 1563 1335 371 349 81 36 chr12 25621520 25621861 -118660628 + L2 LINE L2 2075 2434 -880 1090 197 57 111 chr12 25621861 25622182 -118660307 + MLT1A1 LTR MaLR 1 299 -66 2502 67 0 13 chr12 25622182 25622497 -118659992 - AluY SINE Alu 0 311 1 1090 197 57 111 chr12 25622497 25622561 -118659928 + MLT1A1 LTR MaLR 299 365 0 371 349 81 36 chr12 25622561 25622577 -118659912 + L2 LINE L2 2434 2448 -866 21662 146 29 27 chr12 25622743 25626048 -118656441 + L1MA2 LINE L1 16 3312 -4412 203 79 26 0 chr12 25626048 25626086 -118656403 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 21662 146 29 27 chr12 25626086 25627135 -118655354 + L1MA2 LINE L1 3312 4357 -3367 2033 98 6 80 chr12 25627135 25627471 -118655018 + AluSq SINE Alu 1 311 -2 21662 146 29 27 chr12 25627471 25630332 -118652157 + L1MA2 LINE L1 4357 7249 -475 15328 123 25 35 chr12 25630366 25633025 -118649464 + L1PA12 LINE L1 1148 4611 -2973 6243 62 20 0 chr12 25633001 25633811 -118648678 + L1PA7 LINE L1 6766 7591 -1 * 3307 89 0 24 chr12 25633811 25634305 -118648184 + L1MA2 LINE L1 7233 7723 0 22 35 0 0 chr12 25634305 25634334 -118648155 + AT_rich Low_complexity Low_complexity 1 29 0 254 312 32 24 chr12 25634423 25634548 -118647941 + L2 LINE L2 212 337 -2977 1705 215 35 19 chr12 25634779 25635044 -118647445 - MER82 DNA MER2_type 0 653 379 207 0 0 0 chr12 25635044 25635067 -118647422 + (TG)n Simple_repeat Simple_repeat 2 24 0 1705 215 35 19 chr12 25635067 25635177 -118647312 - MER82 DNA MER2_type -274 379 272 738 189 0 0 chr12 25635172 25635294 -118647195 + Tigger3b DNA MER2_type 1110 1231 0 * 226 293 67 133 chr12 25635321 25635666 -118646823 + L2 LINE L2 2914 3235 -37 249 33 0 0 chr12 25635711 25635741 -118646748 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 435 301 36 87 chr12 25635781 25636113 -118646376 - L3 LINE CR1 -359 1218 904 519 335 74 4 chr12 25636282 25636512 -118645977 + MIR SINE MIR 5 250 -12 1520 156 68 4 chr12 25636640 25636935 -118645554 + AluSg SINE Alu 1 312 0 1383 178 8 0 chr12 25637374 25637610 -118644879 - L1PB4 LINE L1 -7 6149 5912 209 139 23 23 chr12 25637663 25637706 -118644783 + CT-rich Low_complexity Low_complexity 5 47 0 238 369 70 56 chr12 25637770 25638125 -118644364 - L3 LINE CR1 -1217 360 1 228 35 0 0 chr12 25638918 25638947 -118643542 + (GA)n Simple_repeat Simple_repeat 1 29 0 210 118 0 0 chr12 25639089 25639123 -118643366 + (TG)n Simple_repeat Simple_repeat 2 35 0 228 163 23 0 chr12 25639349 25639392 -118643097 + L2 LINE L2 3269 3312 -1 495 0 0 0 chr12 25640353 25640408 -118642081 + (TG)n Simple_repeat Simple_repeat 2 56 0 1988 115 14 0 chr12 25640408 25640686 -118641803 - AluSc SINE Alu -27 282 1 590 181 0 43 chr12 25641638 25641826 -118640663 + CT-rich Low_complexity Low_complexity 1 180 0 24 32 0 0 chr12 25642405 25642436 -118640053 + AT_rich Low_complexity Low_complexity 1 31 0 435 335 63 11 chr12 25643200 25643391 -118639098 + MLT1J LTR MaLR 4 204 -307 305 241 69 0 chr12 25643422 25643509 -118638980 + MLT1J LTR MaLR 415 507 -4 191 196 250 0 chr12 25644260 25644316 -118638173 - MER5A DNA MER1_type -6 183 114 675 310 29 8 chr12 25644875 25645117 -118637372 + MIR SINE MIR 16 262 0 410 317 65 57 chr12 25648131 25648670 -118633819 - L1MC4a LINE L1 -154 5967 5399 231 287 86 57 chr12 25649099 25649308 -118633181 - L1MC4a LINE L1 -1302 4844 4630 403 81 0 0 chr12 25649541 25649603 -118632886 + L1MA1 LINE L1 6241 6302 0 248 287 35 0 chr12 25650128 25650215 -118632274 + (CATATA)n Simple_repeat Simple_repeat 4 93 0 2641 229 27 7 chr12 25652299 25653011 -118629478 + L1MC1 LINE L1 4143 4868 -1278 5499 147 45 0 chr12 25653122 25654246 -118628243 + L1MC1 LINE L1 5122 6333 0 1940 94 4 0 chr12 25654421 25654675 -118627814 - AluSg SINE Alu -12 298 44 190 314 86 48 chr12 25654698 25654803 -118627686 - MIR SINE MIR -67 141 33 24 0 0 0 chr12 25656276 25656300 -118626189 + AT_rich Low_complexity Low_complexity 1 24 0 13481 137 19 20 chr12 25656509 25658753 -118623736 + L1PA6 LINE L1 11 2252 -3894 22060 63 11 0 chr12 25658753 25662440 -118620049 + L1PA6 LINE L1 2463 6167 0 214 200 0 0 chr12 25664208 25664248 -118618241 + A-rich Low_complexity Low_complexity 1 40 0 662 138 0 0 chr12 25865762 25865856 -118416633 + AluSg/x SINE Alu 204 297 -13 1852 156 0 7 chr12 25865863 25866152 -118416337 + AluSx SINE Alu 1 287 -25 297 264 90 35 chr12 25866870 25867014 -118415475 + L3b LINE CR1 1102 1253 -330 2251 122 0 0 chr12 25867052 25867356 -118415133 + AluSx SINE Alu 1 304 -8 2300 119 0 0 chr12 25868281 25868583 -118413906 + AluSg SINE Alu 1 302 -8 375 161 0 92 chr12 25868615 25868702 -118413787 - AluJb SINE Alu -171 131 53 1484 69 19 5 chr12 25868702 25868918 -118413571 - pTR5 LTR ERV1 -2048 390 172 299 245 10 0 chr12 25868921 25869019 -118413470 - LTR30 LTR ERV1 -80 642 544 4020 122 65 83 chr12 25869023 25870027 -118412462 - pTR5 LTR ERV1 -417 2021 745 294 259 0 0 chr12 25870028 25870086 -118412403 - AluJb SINE Alu -244 58 1 307 286 58 18 chr12 25870376 25870547 -118411942 - LTR67 LTR ERVL -7 550 373 21 0 0 0 chr12 25871071 25871092 -118411397 + AT_rich Low_complexity Low_complexity 1 21 0 296 289 117 8 chr12 25872239 25872367 -118410122 - MIR SINE MIR -1 261 120 197 139 23 0 chr12 25872429 25872472 -118410017 + (TG)n Simple_repeat Simple_repeat 1 44 0 1166 155 130 8 chr12 25872782 25873053 -118409436 - L1ME1 LINE L1 -9 6157 5858 1064 198 18 0 chr12 25873778 25874000 -118408489 - L1MB7 LINE L1 0 6184 5959 23 0 0 0 chr12 25874103 25874126 -118408363 + AT_rich Low_complexity Low_complexity 1 23 0 2366 43 0 27 chr12 25874663 25874964 -118407525 + AluY SINE Alu 19 311 0 1367 225 111 53 chr12 25875158 25875670 -118406819 - MLT1F LTR MaLR 0 542 1 564 234 48 8 chr12 25875703 25875827 -118406662 - FLAM_C SINE Alu -13 130 2 2155 106 14 0 chr12 25875833 25876125 -118406364 - AluSq SINE Alu -17 296 1 31 76 0 0 chr12 25876156 25876222 -118406267 + AT_rich Low_complexity Low_complexity 1 66 0 731 130 0 0 chr12 25876537 25876637 -118405852 + AluJ/FLAM SINE Alu 1 100 -212 5570 227 48 60 chr12 25876778 25878407 -118404082 + L1MD1 LINE L1 2946 4593 -1553 716 186 0 0 chr12 25878407 25878525 -118403964 - FLAM_C SINE Alu -15 118 1 5570 227 48 60 chr12 25878525 25878572 -118403917 + L1MD1 LINE L1 4593 4639 -1507 2127 132 3 0 chr12 25878572 25878867 -118403622 - AluSx SINE Alu -16 296 1 5570 227 48 60 chr12 25878867 25879216 -118403273 + L1MD1 LINE L1 4639 4948 -1198 225 200 0 0 chr12 25879216 25879261 -118403228 + A-rich Low_complexity Low_complexity 1 45 0 2220 72 0 69 chr12 25879278 25879597 -118402892 - AluY SINE Alu -14 297 1 982 226 7 7 chr12 25879599 25879873 -118402616 + L1MD1 LINE L1 4961 5234 -912 2492 164 35 15 chr12 25879875 25880395 -118402094 + L1MD1 LINE L1 5417 5946 -296 328 125 0 0 chr12 25880398 25880446 -118402043 - MER8 DNA MER2_type 0 239 192 611 67 11 0 chr12 25880887 25880977 -118401512 - L1PB2 LINE L1 -2 6149 6059 1147 162 113 11 chr12 25880978 25881244 -118401245 - L1MD1 LINE L1 0 6242 5950 658 176 110 0 chr12 25881249 25881385 -118401104 - Tigger2 DNA MER2_type -4 2714 2564 1789 167 94 25 chr12 25881569 25882006 -118400483 + MLT1C LTR MaLR 1 467 0 219 140 0 0 chr12 25882598 25882648 -118399841 + (A)n Simple_repeat Simple_repeat 1 50 0 2077 128 7 7 chr12 25882817 25883121 -118399368 + AluSx SINE Alu 6 309 -3 2141 87 35 3 chr12 25883131 25883418 -118399071 + AluSg SINE Alu 1 296 -14 401 334 51 80 chr12 25884950 25885552 -118396937 - L2 LINE L2 -28 3244 2667 743 310 53 59 chr12 25885643 25885979 -118396510 + MLT1K LTR MaLR 102 436 -152 1684 162 40 14 chr12 25885979 25886275 -118396214 + AluJb SINE Alu 1 304 -8 743 310 53 59 chr12 25886275 25886412 -118396077 + MLT1K LTR MaLR 436 572 -16 287 283 28 9 chr12 25886426 25886532 -118395957 - L2 LINE L2 -654 2660 2553 2100 90 0 4 chr12 25886646 25886913 -118395576 - AluSq SINE Alu -47 266 1 2644 216 69 41 chr12 25887102 25887492 -118394997 - L1ME1 LINE L1 -5 6161 5783 2270 94 0 3 chr12 25887492 25887791 -118394698 - AluY SINE Alu -13 298 1 2644 216 69 41 chr12 25887791 25888225 -118394264 - L1ME1 LINE L1 -383 5783 5314 2270 151 36 7 chr12 25888227 25888638 -118393851 - L1MA5 LINE L1 -5 6295 5873 2292 202 75 31 chr12 25888660 25889337 -118393152 - L1MD2 LINE L1 -15 6344 5638 4466 217 44 32 chr12 25889341 25890216 -118392273 - L1ME1 LINE L1 -831 5315 4417 1565 146 40 80 chr12 25890216 25890539 -118391950 - AluSx SINE Alu 0 312 1 4466 217 44 32 chr12 25890539 25891011 -118391478 - L1ME1 LINE L1 -1729 4417 3952 567 188 7 13 chr12 25891011 25891160 -118391329 + CT-rich Low_complexity Low_complexity 3 150 0 298 261 80 0 chr12 25891276 25891364 -118391125 - L1MC/D LINE L1 -2035 5773 5679 494 335 21 38 chr12 25891414 25891653 -118390836 + L3 LINE CR1 1307 1541 -36 2503 196 62 9 chr12 25892589 25893167 -118389322 - L1MD3 LINE L1 -5 7990 7382 242 190 52 0 chr12 25893178 25893236 -118389253 - MLT2B1 LTR ERVL 0 520 460 365 248 25 6 chr12 25893239 25893400 -118389089 + (TATATG)n Simple_repeat Simple_repeat 3 166 0 1469 223 74 28 chr12 25893408 25893865 -118388624 - MLT2B1 LTR ERVL -42 478 1 391 247 10 0 chr12 25893878 25893975 -118388514 - L1MC3 LINE L1 -643 7142 7045 201 372 91 16 chr12 25894201 25894322 -118388167 - L2 LINE L2 -10 3262 3133 251 211 55 128 chr12 25894338 25894447 -118388042 + MIR SINE MIR 66 166 -96 1926 117 0 0 chr12 25894565 25894830 -118387659 - AluSq SINE Alu -48 265 1 258 327 115 0 chr12 25895786 25895890 -118386599 - MIR SINE MIR -26 236 121 2154 110 3 23 chr12 25895893 25896203 -118386286 + AluSx SINE Alu 1 304 -8 264 329 73 36 chr12 25896223 25896360 -118386129 + L2 LINE L2 3112 3253 -19 21 0 0 0 chr12 25896617 25896638 -118385851 + AT_rich Low_complexity Low_complexity 1 21 0 367 282 0 0 chr12 25896885 25896988 -118385501 - MER117 DNA MER1_type -43 154 52 1782 126 51 0 chr12 25897139 25897394 -118385095 + AluSx SINE Alu 1 268 -44 26 0 0 0 chr12 25897396 25897422 -118385067 + AT_rich Low_complexity Low_complexity 1 26 0 2053 90 58 0 chr12 25897422 25897699 -118384790 + AluSg SINE Alu 1 293 -17 5454 159 37 18 chr12 25897868 25898886 -118383603 + L1PA16 LINE L1 4119 5172 -994 2309 105 0 3 chr12 25898886 25899199 -118383290 + AluSx SINE Alu 1 312 0 5454 159 37 18 chr12 25899199 25899722 -118382767 + L1PA16 LINE L1 5172 5684 -482 1893 147 65 28 chr12 25899722 25900258 -118382231 - MLT2A2 LTR ERVL 0 554 2 3062 130 8 4 chr12 25900258 25900785 -118381704 + L1PA16 LINE L1 5679 6207 0 1218 255 105 31 chr12 25900799 25901214 -118381275 + L1MC4 LINE L1 7400 7821 -174 2296 79 17 0 chr12 25901214 25901505 -118380984 + AluSx SINE Alu 3 298 -14 1218 255 105 31 chr12 25901505 25901695 -118380794 + L1MC4 LINE L1 7821 7995 0 232 275 58 0 chr12 25902065 25902134 -118380355 - MIR3 SINE MIR -9 199 127 2199 118 3 3 chr12 25902345 25902651 -118379838 - AluSx SINE Alu -6 306 1 24 32 0 0 chr12 25902704 25902735 -118379754 + AT_rich Low_complexity Low_complexity 1 31 0 1527 183 63 7 chr12 25903252 25903537 -118378952 + AluJo SINE Alu 1 301 -11 2245 94 13 3 chr12 25903538 25903836 -118378653 + AluY SINE Alu 1 301 -10 2122 87 28 10 chr12 25903895 25904183 -118378306 + AluSx SINE Alu 1 293 -19 30 45 0 0 chr12 25905365 25905409 -118377080 + AT_rich Low_complexity Low_complexity 1 44 0 832 154 0 15 chr12 25905415 25905551 -118376938 - AluJo SINE Alu -178 134 1 257 317 133 17 chr12 25905560 25905680 -118376809 - MIR SINE MIR -68 140 6 195 100 0 0 chr12 25905833 25905863 -118376626 + (CAT)n Simple_repeat Simple_repeat 1 30 0 29 0 0 0 chr12 25906279 25906308 -118376181 + AT_rich Low_complexity Low_complexity 1 29 0 1404 169 112 0 chr12 25906308 25906568 -118375921 - AluJb SINE Alu -13 289 1 1528 187 47 43 chr12 25906710 25907009 -118375480 - AluJb SINE Alu -12 300 1 1539 136 0 0 chr12 25907255 25907475 -118375014 - AluSg/x SINE Alu -7 303 84 214 123 68 27 chr12 25907541 25907614 -118374875 + (TA)n Simple_repeat Simple_repeat 1 76 0 2247 81 3 14 chr12 25907665 25907962 -118374527 - AluY SINE Alu -17 294 1 657 291 72 56 chr12 25908200 25908646 -118373843 + MLT1K LTR MaLR 136 588 0 432 277 113 61 chr12 25908844 25909075 -118373414 - MLT1K LTR MaLR -158 430 188 1215 92 10 77 chr12 25909441 25909637 -118372852 + AluSg/x SINE Alu 113 295 -15 622 228 15 20 chr12 25909654 25909795 -118372694 - L1MC4 LINE L1 0 8042 7901 302 60 0 40 chr12 25909795 25909845 -118372644 + (CCTA)n Simple_repeat Simple_repeat 4 51 0 622 228 15 20 chr12 25909845 25909900 -118372589 - L1MC4 LINE L1 -141 7901 7847 2447 244 25 15 chr12 25909934 25910601 -118371888 - L1ME1 LINE L1 -18 6408 5735 1085 153 21 153 chr12 25910603 25910989 -118371500 - L1 LINE L1 -2522 3624 3290 2468 240 62 16 chr12 25911003 25911979 -118370510 - L1ME1 LINE L1 -743 5663 4726 2431 222 94 40 chr12 25911982 25912243 -118370246 - L1ME1 LINE L1 -4507 1899 1653 2272 86 0 3 chr12 25912243 25912533 -118369956 + AluSc SINE Alu 3 291 -18 2431 222 94 40 chr12 25912533 25913374 -118369115 - L1ME1 LINE L1 -4753 1653 782 2245 193 38 36 chr12 25913718 25914017 -118368472 - L1MC4 LINE L1 -172 7870 7567 2143 103 0 0 chr12 25914017 25914333 -118368156 - AluSx SINE Alu 0 317 2 2245 193 38 36 chr12 25914333 25914586 -118367903 - L1MC4 LINE L1 -475 7567 7316 600 171 26 0 chr12 25914649 25914766 -118367723 + MER3 DNA MER1_type 2 121 -88 1659 162 0 8 chr12 25914776 25915064 -118367425 + AluJo SINE Alu 32 317 0 222 91 0 0 chr12 25915152 25915185 -118367304 + (TTG)n Simple_repeat Simple_repeat 2 34 0 218 207 73 85 chr12 25915392 25915474 -118367015 - MIR SINE MIR -156 106 26 2278 101 3 0 chr12 25917684 25917982 -118364507 - AluSq SINE Alu -14 299 1 255 307 0 11 chr12 25918137 25918225 -118364264 + CT-rich Low_complexity Low_complexity 2 88 0 27 0 0 0 chr12 25919160 25919187 -118363302 + AT_rich Low_complexity Low_complexity 1 27 0 278 297 210 31 chr12 25919437 25919632 -118362857 - L3 LINE CR1 -7 1570 1341 1304 71 44 0 chr12 25919734 25919917 -118362572 + L1PA8 LINE L1 5979 6169 -3 3097 316 36 48 chr12 25920126 25921961 -118360528 - ERVL LTR ERVL -1119 4645 2833 2538 231 32 75 chr12 25921962 25922803 -118359686 + MER21B LTR ERV1 2 806 -57 553 204 30 15 chr12 25922824 25922956 -118359533 - ERVL LTR ERVL -2197 2799 2666 2154 158 72 17 chr12 25922956 25923428 -118359061 - Tigger7 DNA MER2_type -1 2486 107 595 198 0 0 chr12 25923580 25923686 -118358803 - Tigger7 DNA MER2_type -599 106 1 2185 311 52 28 chr12 25923723 25924879 -118357610 - ERVL LTR ERVL -2365 2631 1386 233 197 60 68 chr12 25924883 25924948 -118357541 - L1MCc LINE L1 -3801 3140 3075 1356 142 19 11 chr12 25924948 25925215 -118357274 - L1MA9 LINE L1 0 6312 6044 233 197 60 68 chr12 25925215 25925266 -118357223 - L1MCc LINE L1 -3866 3075 3025 363 133 17 0 chr12 25925287 25925347 -118357142 - Tigger5 DNA MER2_type -19 2304 2244 302 257 0 0 chr12 25925339 25925409 -118357080 + Tigger5 DNA MER2_type 2242 2311 -12 * 389 225 0 0 chr12 25925407 25925487 -118357002 - Tigger5 DNA MER2_type -2242 81 2 334 222 76 38 chr12 25925510 25925695 -118356794 - L1MCc LINE L1 -4086 3036 2845 790 287 100 10 chr12 25925720 25926213 -118356276 - L1MCc LINE L1 -4550 2468 1849 5727 149 11 38 chr12 25926285 25928029 -118354460 - L1PB3 LINE L1 -1 6153 4429 296 104 0 0 chr12 25928029 25928077 -118354412 + MADE1 DNA Mariner 33 80 0 5727 149 11 38 chr12 25928077 25928375 -118354114 - L1PB3 LINE L1 -1725 4429 4125 301 370 52 35 chr12 25928376 25928549 -118353940 - L1MCc LINE L1 -5082 1861 1686 391 294 38 21 chr12 25928577 25928953 -118353536 - L1MCc LINE L1 -4892 1531 1181 198 103 0 0 chr12 25929392 25929421 -118353068 + (T)n Simple_repeat Simple_repeat 1 29 0 366 224 208 0 chr12 25929773 25929898 -118352591 - MER103 DNA DNA -7 159 9 340 289 0 10 chr12 25930946 25931043 -118351446 - L1MC5 LINE L1 -76 7885 7790 2307 87 0 3 chr12 25931104 25931402 -118351087 + AluY SINE Alu 1 297 -14 5146 167 64 31 chr12 25931438 25932582 -118349907 - L1MC3 LINE L1 -8 7777 6596 2149 94 10 0 chr12 25932576 25932883 -118349606 + THE1A-int LTR MaLR 1271 1580 0 * 2365 118 8 8 chr12 25932883 25933238 -118349251 + THE1A LTR MaLR 1 355 0 668 93 26 130 chr12 25933239 25933415 -118349074 + L1P LINE L1 5236 5393 -755 * 5292 91 33 7 chr12 25933405 25934223 -118348266 + L1PA13 LINE L1 5323 6161 -2 506 241 80 5 chr12 25934219 25934418 -118348071 - L1MC5 LINE L1 -785 7176 6963 * 1670 57 33 0 chr12 25934428 25934640 -118347849 - AluY SINE Alu 0 311 93 230 203 0 85 chr12 25934647 25934706 -118347783 + LTR33A LTR ERVL 467 520 -3 1005 269 79 51 chr12 25934729 25935757 -118346732 + L1PA16 LINE L1 10 2080 -5501 359 277 139 59 chr12 25935895 25936133 -118346356 + L1M2 LINE L1 796 1052 -5797 732 203 0 86 chr12 25936427 25936649 -118345840 - L1PA16 LINE L1 -2581 5003 4801 8216 164 18 10 chr12 25936651 25936792 -118345697 + L1PA16 LINE L1 5004 5142 -2462 1903 117 78 0 chr12 25936792 25937073 -118345416 - AluSq SINE Alu -10 303 1 8216 164 18 10 chr12 25937073 25939519 -118342970 + L1PA16 LINE L1 5142 7603 -1 461 299 85 41 chr12 25939750 25940128 -118342361 - L1MC4a LINE L1 -252 5912 5662 216 252 149 47 chr12 25940903 25941010 -118341479 + L2 LINE L2 2936 3053 -219 895 258 32 16 chr12 25941271 25941523 -118340966 - MIR SINE MIR -2 260 5 853 69 35 0 chr12 25942900 25943016 -118339473 + L1PA16 LINE L1 6038 6157 -9 22 0 0 0 chr12 25943074 25943096 -118339393 + AT_rich Low_complexity Low_complexity 1 22 0 287 203 39 88 chr12 25943306 25943488 -118339001 - L1ME4a LINE L1 -14 6107 5935 453 296 74 22 chr12 25943556 25943786 -118338703 - L1ME4a LINE L1 -146 5975 5734 862 273 52 13 chr12 25944054 25944285 -118338204 - MIR SINE MIR -21 241 2 409 284 9 0 chr12 25944306 25944422 -118338067 + MER117 DNA MER1_type 9 125 -72 427 286 44 30 chr12 25944744 25944944 -118337545 + MIR SINE MIR 15 212 -50 359 200 0 0 chr12 25945317 25945402 -118337087 - L1MEc LINE L1 -5238 1158 1074 879 258 76 89 chr12 25945402 25945952 -118336537 + MER68 LTR ERV1 1 543 -19 2551 234 72 64 chr12 25945978 25946031 -118336458 - L1MEc LINE L1 -5344 1052 1001 2036 125 10 0 chr12 25946031 25946326 -118336163 + AluSx SINE Alu 1 298 -14 2551 234 72 64 chr12 25946326 25947282 -118335207 - L1MEc LINE L1 -5395 1001 35 25 0 0 0 chr12 25947301 25947326 -118335163 + AT_rich Low_complexity Low_complexity 1 25 0 7179 30 1 0 chr12 25947348 25948240 -118334249 - L1PA4 LINE L1 0 6155 5263 2224 33 0 0 chr12 25948236 25948512 -118333977 - L1PA4 LINE L1 -1319 4827 4552 * 230 323 0 0 chr12 25948563 25948625 -118333864 + L2 LINE L2 3246 3307 -6 2762 181 34 2 chr12 25949291 25949793 -118332696 + LTR53 LTR ERVL 1 518 -1 33 66 0 0 chr12 25950434 25950495 -118331994 + AT_rich Low_complexity Low_complexity 1 61 0 268 253 13 40 chr12 25950763 25950838 -118331651 - MIR SINE MIR -31 231 159 416 290 65 7 chr12 25950853 25950991 -118331498 + MIR SINE MIR 99 244 -18 729 217 189 0 chr12 25951230 25951442 -118331047 + MIR SINE MIR 7 258 -4 621 232 39 32 chr12 25951569 25951724 -118330765 - MIR SINE MIR -21 241 86 1264 124 0 69 chr12 25952986 25953203 -118329286 - AluJo SINE Alu -106 206 5 535 248 24 0 chr12 25953319 25953444 -118329045 - L1ME3A LINE L1 -9 6161 6034 368 268 162 14 chr12 25953997 25954139 -118328350 - MER5A DNA MER1_type -3 186 24 942 192 21 1 chr12 25955242 25955594 -118326895 - MSTD LTR MaLR 0 396 1 1492 186 50 7 chr12 25955705 25955984 -118326505 - AluJb SINE Alu -21 291 1 569 278 99 14 chr12 25955993 25956428 -118326061 - L1ME3A LINE L1 -6 6164 5697 26 50 0 0 chr12 25956434 25956474 -118326015 + AT_rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr12 25956560 25956590 -118325899 + AT_rich Low_complexity Low_complexity 1 30 0 1999 75 86 25 chr12 25956837 25957116 -118325373 - AluSq SINE Alu -17 296 1 550 285 101 74 chr12 25957319 25957645 -118324844 - MLT1J LTR MaLR -44 467 133 24 0 0 0 chr12 25958057 25958081 -118324408 + AT_rich Low_complexity Low_complexity 1 24 0 542 271 42 57 chr12 25959018 25959210 -118323279 - MIR SINE MIR -15 247 59 184 344 0 16 chr12 25959194 25959255 -118323234 + MIR3 SINE MIR 132 191 -17 * 222 323 0 0 chr12 25959829 25959891 -118322598 + GA-rich Low_complexity Low_complexity 2 63 0 979 82 0 0 chr12 25960166 25960301 -118322188 - HERVL LTR ERVL -428 5226 5092 2748 61 24 16 chr12 25960364 25960741 -118321748 - MLT2A1 LTR ERVL -64 380 1 2026 33 17 43 chr12 25960741 25961041 -118321448 - HERVL-A1 LTR ERVL 0 5654 5363 2119 101 3 7 chr12 25961041 25961327 -118321162 + AluSq SINE Alu 11 295 -18 10177 72 3 5 chr12 25961327 25962669 -118319820 - HERVL LTR ERVL -350 5304 3965 506 238 49 8 chr12 25962722 25962844 -118319645 + MER91B DNA MER1_type 4 130 -60 307 212 61 81 chr12 25962859 25962958 -118319531 + MER91B DNA MER1_type 93 189 -1 856 265 118 43 chr12 25963502 25963966 -118318523 + L2 LINE L2 2804 3302 -11 378 0 0 0 chr12 25964395 25964437 -118318052 + (CA)n Simple_repeat Simple_repeat 1 42 0 1949 137 11 0 chr12 25965672 25965956 -118316533 + AluJo SINE Alu 1 287 -25 2226 120 0 3 chr12 25966019 25966320 -118316169 + AluSx SINE Alu 1 300 -12 876 150 0 0 chr12 25966795 25966928 -118315561 - FLAM_C SINE Alu 0 133 1 14366 22 1 0 chr12 25967035 25969487 -118313002 - L1PA2 LINE L1 -2 6153 3700 * 21099 45 51 3 chr12 25969484 25972183 -118310306 - L1PA2 LINE L1 -3316 2830 2 369 294 20 0 chr12 25973365 25973467 -118309022 - MER5A DNA MER1_type -83 106 3 664 279 60 17 chr12 25976273 25976581 -118305908 + MLT1G1 LTR MaLR 68 358 -184 1223 180 20 46 chr12 25977211 25977516 -118304973 - L1MA9 LINE L1 -5 6307 6011 336 48 0 0 chr12 25977771 25977813 -118304676 + (TG)n Simple_repeat Simple_repeat 2 43 0 2149 161 45 16 chr12 25979258 25979705 -118302784 - L1MB4 LINE L1 -37 6143 5684 1586 159 74 21 chr12 25979705 25980031 -118302458 + MER61A LTR ERV1 1 343 0 2190 109 0 0 chr12 25980046 25980339 -118302150 + AluSx SINE Alu 2 294 -18 23 0 0 0 chr12 25980362 25980385 -118302104 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 25980789 25980811 -118301678 + AT_rich Low_complexity Low_complexity 1 22 0 1610 162 67 7 chr12 25981600 25981884 -118300605 - AluJo SINE Alu -11 301 1 2003 150 0 3 chr12 25983513 25983820 -118298669 - AluSx SINE Alu -6 306 1 535 255 56 37 chr12 25984049 25984210 -118298279 + MIR SINE MIR 7 170 -92 207 397 140 0 chr12 25985055 25985191 -118297298 + MIR3 SINE MIR 40 194 -14 26 0 0 0 chr12 25986333 25986359 -118296130 + AT_rich Low_complexity Low_complexity 1 26 0 357 260 184 20 chr12 25989294 25989408 -118293081 - L1MC4 LINE L1 0 8042 7948 2107 119 14 0 chr12 25989408 25989703 -118292786 - AluSq SINE Alu -12 301 3 357 260 184 20 chr12 25989703 25989892 -118292597 - L1MC4 LINE L1 -94 7948 7689 485 286 258 13 chr12 25989986 25990304 -118292185 - MLT1J LTR MaLR -38 473 78 1601 272 41 39 chr12 25990663 25991226 -118291263 - L1ME3A LINE L1 -12 6227 5664 728 219 172 47 chr12 25991215 25991558 -118290931 - L1ME3A LINE L1 -1982 4233 3848 * 304 198 37 0 chr12 25991558 25991639 -118290850 + L1M4 LINE L1 2878 2961 -3185 2414 78 0 0 chr12 25991642 25991937 -118290552 - AluSq SINE Alu -18 295 1 1602 226 46 22 chr12 25992103 25992559 -118289930 + MLT1C LTR MaLR 1 467 0 492 326 67 19 chr12 25992634 25992904 -118289585 - L1ME3A LINE L1 -4579 1817 1535 537 270 14 19 chr12 25992906 25993121 -118289368 - L1ME3A LINE L1 -4959 1437 1224 212 274 0 27 chr12 25993128 25993201 -118289288 + CT-rich Low_complexity Low_complexity 4 74 0 398 344 121 39 chr12 25993323 25993818 -118288671 - L2 LINE L2 -6 3266 2725 405 339 81 19 chr12 25993841 25994101 -118288388 - L2 LINE L2 -810 2504 2229 330 334 85 47 chr12 25994208 25994523 -118287966 + L2 LINE L2 2730 3050 -222 469 305 58 0 chr12 25994551 25994725 -118287764 - MER112 DNA MER1_type 0 260 77 21 0 0 0 chr12 25994948 25994969 -118287520 + AT_rich Low_complexity Low_complexity 1 21 0 745 287 124 55 chr12 25995714 25995894 -118286595 + L1 LINE L1 4050 4216 -1930 1672 176 40 0 chr12 25995894 25996199 -118286290 + AluSx SINE Alu 1 316 0 745 287 124 55 chr12 25996199 25996759 -118285730 + L1 LINE L1 4216 4842 -1304 304 220 66 11 chr12 25996808 25996899 -118285590 + L1 LINE L1 4912 5007 -1139 2170 83 9 23 chr12 25996910 25997246 -118285243 + L1MA1 LINE L1 5871 6202 -100 22 80 0 0 chr12 25997248 25997298 -118285191 + AT_rich Low_complexity Low_complexity 1 50 0 413 330 42 11 chr12 25997326 25997587 -118284902 + L1MC4a LINE L1 5376 5644 -2164 37 39 0 0 chr12 25997712 25997763 -118284726 + AT_rich Low_complexity Low_complexity 1 51 0 315 346 78 25 chr12 25997787 25998030 -118284459 + L1MC4a LINE L1 5748 6003 -1805 195 214 36 36 chr12 25999156 25999212 -118283277 - MIR3 SINE MIR -41 167 112 2211 23 0 0 chr12 25999245 25999617 -118282872 + L1P1 LINE L1 5151 5522 -633 1213 48 0 0 chr12 25999617 25999785 -118282704 + L1PA3 LINE L1 5993 6162 0 188 200 71 129 chr12 26000600 26000685 -118281804 - L2 LINE L2 0 3313 3234 2428 66 0 7 chr12 26001352 26001657 -118280832 + AluY SINE Alu 1 303 -8 4489 181 54 20 chr12 26002152 26002188 -118280301 - L1MA9 LINE L1 -40 6272 6239 297 0 0 0 chr12 26002188 26002221 -118280268 + (TA)n Simple_repeat Simple_repeat 2 34 0 4489 181 54 20 chr12 26002221 26003456 -118279033 - L1MA9 LINE L1 -73 6239 4960 189 372 22 44 chr12 26003547 26003684 -118278805 + MIR SINE MIR 47 180 -82 306 330 31 10 chr12 26004519 26004616 -118277873 + MIR SINE MIR 32 130 -78 2323 89 7 0 chr12 26005072 26005375 -118277114 - AluSg SINE Alu -5 305 1 314 312 23 50 chr12 26005882 26006103 -118276386 - L2 LINE L2 -249 3023 2809 244 362 49 56 chr12 26006122 26006409 -118276080 + L2 LINE L2 2988 3272 0 237 293 98 0 chr12 26006568 26006650 -118275839 + L2 LINE L2 3192 3281 -32 275 267 147 17 chr12 26007383 26007499 -118274990 + L2 LINE L2 3183 3313 0 475 168 17 10 chr12 26007792 26007912 -118274577 + L1MB1 LINE L1 5729 5850 -339 239 137 20 0 chr12 26007912 26007963 -118274526 + L1PB1 LINE L1 6097 6148 -3 270 0 0 0 chr12 26009685 26009715 -118272774 + (TA)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr12 26009714 26009740 -118272749 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 263 293 0 0 chr12 26009740 26009822 -118272667 - L1MC4 LINE L1 -1347 6695 6614 864 233 84 13 chr12 26009827 26010136 -118272353 + MER46C DNA MER2_type 5 335 -3 522 219 44 0 chr12 26010239 26010353 -118272136 - MIR SINE MIR -62 200 82 544 340 167 25 chr12 26010587 26011907 -118270582 + L2 LINE L2 1344 2850 -464 340 281 77 18 chr12 26012002 26012234 -118270255 - L1ME LINE L1 -645 5504 5258 608 308 174 20 chr12 26012305 26012762 -118269727 - L1ME LINE L1 -953 5176 4638 2479 221 48 23 chr12 26012762 26013373 -118269116 + MLT1E2 LTR MaLR 1 626 0 608 308 174 20 chr12 26013373 26013405 -118269084 - L1ME LINE L1 -1491 4638 4612 339 293 63 59 chr12 26013518 26014006 -118268483 - L1MEd LINE L1 -4866 1253 895 247 314 119 8 chr12 26014590 26014708 -118267781 - L1ME LINE L1 -478 5643 5513 3833 245 100 20 chr12 26016275 26017690 -118264799 + L1MEc LINE L1 38 1393 -4822 3770 199 20 31 chr12 26017675 26018740 -118263749 + L1MEc LINE L1 2170 3180 -3035 * 40268 41 26 2 chr12 26018740 26024749 -118257740 + L1PA4 LINE L1 2 6152 -3 21 0 0 0 chr12 26024749 26024770 -118257719 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr12 26025071 26025095 -118257394 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 289 242 116 0 chr12 26025355 26025450 -118257039 + L2 LINE L2 3130 3235 -78 608 174 31 0 chr12 26025702 26025800 -118256689 + 7SLRNA srpRNA srpRNA 206 306 -14 209 33 33 0 chr12 26026773 26026803 -118255686 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1096 119 31 0 chr12 26027109 26027303 -118255186 + L1MA4 LINE L1 6096 6295 -5 14429 153 34 6 chr12 26027479 26030873 -118251616 - L1MA2 LINE L1 0 7723 4154 2401 120 19 6 chr12 26030873 26031232 -118251257 - THE1B LTR MaLR 0 364 1 14429 153 34 6 chr12 26031232 26032561 -118249928 - L1MA2 LINE L1 -3569 4154 2863 7846 201 14 8 chr12 26032566 26034394 -118248095 - L1 LINE L1 -2198 5367 3530 7616 145 27 10 chr12 26034400 26036064 -118246425 - L1PBa LINE L1 -4081 2782 886 360 290 0 0 chr12 26036066 26036159 -118246330 + C-rich Low_complexity Low_complexity 1 93 0 2902 254 54 19 chr12 26036388 26037395 -118245094 - L1MA2 LINE L1 -5816 1750 709 8868 182 38 69 chr12 26037408 26037738 -118244751 - L1 LINE L1 -5451 2114 1775 369 0 0 0 chr12 26037738 26037779 -118244710 + (TC)n Simple_repeat Simple_repeat 2 42 0 8868 182 38 69 chr12 26037779 26039618 -118242871 - L1 LINE L1 -5790 1775 12 723 243 225 16 chr12 26040316 26040798 -118241691 - L1ME3A LINE L1 -295 5867 5275 390 284 69 76 chr12 26040803 26041078 -118241411 - L1ME2 LINE L1 -1 6163 5891 191 119 0 71 chr12 26041780 26041822 -118240667 - L2 LINE L2 -5 3267 3229 2252 138 20 81 chr12 26041890 26042346 -118240143 + MSTA LTR MaLR 1 428 0 200 366 73 26 chr12 26042530 26042721 -118239768 - L2 LINE L2 -345 2969 2770 295 270 11 98 chr12 26042912 26043086 -118239403 - MLT1J LTR MaLR -241 270 112 235 353 165 5 chr12 26043144 26043362 -118239127 - L2 LINE L2 -665 2649 2397 538 323 18 0 chr12 26043575 26043742 -118238747 + MIR3 SINE MIR 31 200 -8 181 385 11 11 chr12 26045203 26045294 -118237195 + MIR SINE MIR 20 110 -152 1523 232 83 51 chr12 26045404 26045934 -118236555 + L2 LINE L2 2414 2960 -354 1610 158 20 43 chr12 26046128 26046267 -118236222 + AluJo SINE Alu 1 142 -170 2327 54 0 60 chr12 26046267 26046584 -118235905 + AluY SINE Alu 1 298 -13 1610 158 20 43 chr12 26046584 26046748 -118235741 + AluJo SINE Alu 142 297 -15 1898 148 47 18 chr12 26047623 26047961 -118234528 + MER7A DNA MER2_type 1 346 0 387 326 61 22 chr12 26048633 26048814 -118233675 - MIR SINE MIR -55 207 20 248 299 118 24 chr12 26049020 26049147 -118233342 - L2 LINE L2 -1 3271 3133 285 335 183 35 chr12 26049355 26050040 -118232449 - L2 LINE L2 -208 3064 2287 1936 158 20 18 chr12 26050095 26050437 -118232052 + MER2 DNA MER2_type 2 344 0 10887 43 0 4 chr12 26052711 26054833 -118227656 + L1PA5 LINE L1 4026 6153 -1 433 175 21 21 chr12 26054989 26055086 -118227403 + HsTC2 DNA Tc2 9 105 -1793 393 345 24 0 chr12 26055104 26055272 -118227217 - L1MEd LINE L1 -5506 613 442 219 247 210 0 chr12 26055994 26056075 -118226414 - MIR SINE MIR -44 218 121 312 164 0 0 chr12 26057697 26057764 -118224725 + GA-rich Low_complexity Low_complexity 4 70 0 329 328 40 8 chr12 26058354 26058479 -118224010 - MIR SINE MIR -105 157 29 1940 155 0 7 chr12 26058551 26058847 -118223642 + AluSx SINE Alu 1 294 -18 2257 99 0 0 chr12 26058860 26059183 -118223306 + AluY SINE Alu 1 323 0 706 203 8 0 chr12 26059402 26059535 -118222954 - MER45A DNA AcHobo -44 134 1 181 281 16 31 chr12 26060003 26060067 -118222422 + L2 LINE L2 3251 3313 0 203 355 40 105 chr12 26060096 26060400 -118222089 + L2 LINE L2 2967 3250 -22 642 308 53 19 chr12 26060414 26060570 -118221919 + MIR SINE MIR 4 153 -109 2131 171 83 13 chr12 26060570 26060968 -118221521 - MSTB LTR MaLR 0 426 1 9156 174 13 14 chr12 26060968 26062620 -118219869 - MSTB-int LTR MaLR 0 1651 1 2399 172 24 5 chr12 26062620 26063038 -118219451 - MSTB LTR MaLR 0 426 1 642 308 53 19 chr12 26063038 26063087 -118219402 + MIR SINE MIR 152 218 -44 1596 103 4 0 chr12 26063943 26064185 -118218304 + L1P5 LINE L1 5536 5778 -373 * 6960 140 38 9 chr12 26064183 26065966 -118216523 + L1M1 LINE L1 2402 4240 -3325 2073 117 0 0 chr12 26065966 26066240 -118216249 + AluSg SINE Alu 1 274 -36 22239 85 11 5 chr12 26066248 26069456 -118213033 + L1PA5 LINE L1 1 3227 -2919 9296 57 10 1 chr12 26069450 26071470 -118211019 + L1PA5 LINE L1 4113 6146 -8 * 2216 158 40 12 chr12 26071552 26071603 -118210886 + L1M1 LINE L1 4227 4275 -3290 2509 109 19 6 chr12 26071603 26071962 -118210527 + THE1B LTR MaLR 1 364 0 2216 158 40 12 chr12 26071962 26072409 -118210080 + L1M1 LINE L1 4275 4739 -2826 457 312 56 0 chr12 26074105 26074230 -118208259 + MIR SINE MIR 49 180 -82 2255 119 3 0 chr12 26074256 26074558 -118207931 + AluSx SINE Alu 6 308 -4 897 219 87 20 chr12 26074745 26075092 -118207397 - L1MC5 LINE L1 -83 7878 7509 1046 276 43 50 chr12 26075215 26075442 -118207047 - MER20B DNA MER1_type -322 461 234 2124 120 3 10 chr12 26075442 26075742 -118206747 - AluSx SINE Alu -14 298 1 1046 276 43 50 chr12 26075742 26075977 -118206512 - MER20B DNA MER1_type -549 234 2 211 308 183 19 chr12 26076767 26076871 -118205618 - MIR SINE MIR -67 141 21 180 0 0 0 chr12 26077922 26077942 -118204547 + (T)n Simple_repeat Simple_repeat 1 20 0 1911 50 50 4 chr12 26077948 26078187 -118204302 - AluY SINE Alu -61 250 1 1784 174 6 13 chr12 26078832 26079143 -118203346 + AluJo SINE Alu 1 309 -3 21 0 0 0 chr12 26079647 26079668 -118202821 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr12 26080941 26080969 -118201520 + AT_rich Low_complexity Low_complexity 1 28 0 350 244 173 0 chr12 26081918 26082045 -118200444 + MIR SINE MIR 110 258 -4 207 332 153 31 chr12 26083051 26083274 -118199215 - MIR SINE MIR 0 262 13 819 104 6 73 chr12 26084962 26085126 -118197363 + L1M3f LINE L1 1253 1405 -5160 3879 213 59 17 chr12 26085129 26086990 -118195499 + L1M3f LINE L1 2686 4628 -2937 1198 274 63 11 chr12 26087165 26087785 -118194704 - L1M4 LINE L1 -2418 3728 3077 37878 68 8 6 chr12 26087787 26093919 -118188570 - L1PA3 LINE L1 0 6155 11 241 383 63 34 chr12 26093987 26094337 -118188152 - L2 LINE L2 -625 2689 2330 333 0 0 0 chr12 26095739 26095776 -118186713 + (CA)n Simple_repeat Simple_repeat 1 37 0 25 0 0 0 chr12 26096148 26096173 -118186316 + AT_rich Low_complexity Low_complexity 1 25 0 1699 218 70 23 chr12 26096206 26096688 -118185801 + MLT1D LTR MaLR 1 505 0 200 271 68 0 chr12 26097057 26097116 -118185373 + L2 LINE L2 3250 3312 -1 298 241 126 45 chr12 26097382 26097581 -118184908 - L2 LINE L2 -1208 2106 1892 195 354 106 21 chr12 26097643 26097880 -118184609 + L2 LINE L2 2006 2262 -1052 2135 155 21 13 chr12 26098170 26098557 -118183932 - MLT1B LTR MaLR 0 390 1 188 277 0 0 chr12 26098830 26098877 -118183612 + L3b LINE CR1 1102 1148 -435 1853 148 3 38 chr12 26098890 26099207 -118183282 - AluJb SINE Alu -6 306 1 22 35 0 0 chr12 26099302 26099331 -118183158 + AT_rich Low_complexity Low_complexity 1 29 0 574 249 140 31 chr12 26099393 26099529 -118182960 - L2 LINE L2 -8 3305 3185 281 26 26 0 chr12 26099529 26099567 -118182922 + (CA)n Simple_repeat Simple_repeat 2 40 0 574 249 140 31 chr12 26099567 26099687 -118182802 - L2 LINE L2 -128 3185 3021 202 162 353 0 chr12 26099709 26099777 -118182712 - MIR SINE MIR 0 262 171 2406 126 78 0 chr12 26099787 26100185 -118182304 + L1MD1 LINE L1 5801 6229 -13 964 179 49 62 chr12 26100185 26100452 -118182037 + L1ME1 LINE L1 5899 6159 -7 297 225 0 28 chr12 26100503 26100574 -118181915 - MIR SINE MIR -121 141 73 702 247 28 6 chr12 26100855 26101037 -118181452 - L2 LINE L2 -1730 1584 1399 322 314 170 13 chr12 26101368 26101521 -118180968 - MIR SINE MIR -73 189 13 517 263 29 35 chr12 26101656 26101827 -118180662 - MER5B DNA MER1_type -7 171 2 229 356 14 0 chr12 26102299 26102372 -118180117 + L2 LINE L2 3239 3312 -1 430 286 31 10 chr12 26102469 26102661 -118179828 - L1ME LINE L1 -325 5796 5601 270 0 0 0 chr12 26102664 26102694 -118179795 + (TC)n Simple_repeat Simple_repeat 2 31 0 41 78 0 0 chr12 26103775 26103865 -118178624 + AT_rich Low_complexity Low_complexity 1 90 0 2117 230 12 46 chr12 26104188 26104812 -118177677 - L1MDa LINE L1 -5840 700 19 1144 83 0 0 chr12 26105096 26105240 -118177249 + U4 snRNA snRNA 1 144 -1 946 313 116 13 chr12 26105318 26105928 -118176561 + HAL1 LINE L1 37 709 -1798 1460 217 101 116 chr12 26105935 26106225 -118176264 + HAL1 LINE L1 1227 1520 -987 2311 83 3 17 chr12 26106225 26106527 -118175962 + AluY SINE Alu 1 298 -13 1460 217 101 116 chr12 26106527 26106799 -118175690 + HAL1 LINE L1 1520 1795 -712 2097 131 3 0 chr12 26106799 26107090 -118175399 + AluSg SINE Alu 1 292 -18 1460 217 101 116 chr12 26107090 26107633 -118174856 + HAL1 LINE L1 1795 2345 -162 2370 109 19 30 chr12 26107633 26108001 -118174488 - THE1B LTR MaLR 0 364 1 11678 96 6 2 chr12 26108001 26109574 -118172915 - THE1B-int LTR MaLR 0 1580 2 2390 111 11 27 chr12 26109575 26109945 -118172544 - THE1B LTR MaLR 0 364 1 1460 217 101 116 chr12 26109945 26110047 -118172442 + HAL1 LINE L1 2343 2420 -87 1469 201 40 11 chr12 26110860 26110983 -118171506 + AluJo SINE Alu 1 119 -193 375 78 0 0 chr12 26110983 26111034 -118171455 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1469 201 40 11 chr12 26111034 26111184 -118171305 + AluJo SINE Alu 119 282 -30 1797 205 63 17 chr12 26111184 26111663 -118170826 + L1MD3 LINE L1 7487 7987 -8 800 162 0 0 chr12 26111680 26111797 -118170692 + FLAM_C SINE Alu 1 117 -16 26 30 0 0 chr12 26111801 26111834 -118170655 + AT_rich Low_complexity Low_complexity 1 33 0 691 249 75 54 chr12 26112187 26112520 -118169969 + LTR33 LTR ERVL 182 521 0 545 171 0 38 chr12 26112666 26112797 -118169692 - AluJb SINE Alu 0 309 183 411 346 86 6 chr12 26113213 26113375 -118169114 - MIR SINE MIR -70 192 18 2010 122 0 21 chr12 26113494 26113827 -118168662 + AluSx SINE Alu 1 327 0 240 146 0 0 chr12 26113867 26113908 -118168581 + MER103 DNA DNA 3 43 -123 595 259 27 7 chr12 26113927 26114074 -118168415 + MER91B DNA MER1_type 36 185 -5 2242 96 3 0 chr12 26114532 26114851 -118167638 - AluSx SINE Alu 0 320 1 392 254 62 46 chr12 26114853 26114983 -118167506 - L2 LINE L2 -2 3311 3180 * 482 368 56 19 chr12 26114979 26115493 -118166996 - L2 LINE L2 -2299 1015 483 209 265 88 0 chr12 26115527 26115595 -118166894 - L2 LINE L2 -2910 404 331 2076 98 35 0 chr12 26116011 26116297 -118166192 - AluSg SINE Alu -14 296 1 625 280 55 25 chr12 26116707 26116943 -118165546 - MIR SINE MIR 0 262 20 1475 86 5 5 chr12 26116943 26117163 -118165326 - pTR5 LTR ERV1 -2047 391 172 333 204 31 20 chr12 26117166 26117264 -118165225 - LTR30 LTR ERV1 -80 642 544 4182 130 61 79 chr12 26117264 26118279 -118164210 - pTR5 LTR ERV1 -413 2025 743 2347 97 0 0 chr12 26118381 26118691 -118163798 - AluY SINE Alu -1 310 1 1242 90 150 0 chr12 26118829 26119029 -118163460 - MER30 DNA MER1_type 0 230 1 1239 150 0 42 chr12 26119105 26119298 -118163191 + AluJo SINE Alu 1 185 -127 1229 181 51 60 chr12 26119720 26119960 -118162529 - MLT1B LTR MaLR 0 390 149 2237 92 0 0 chr12 26119960 26120264 -118162225 - AluSx SINE Alu 0 304 1 1229 181 51 60 chr12 26120264 26120276 -118162213 - MLT1B LTR MaLR -241 149 138 1983 125 40 7 chr12 26120276 26120572 -118161917 - AluSx SINE Alu -2 310 5 1229 181 51 60 chr12 26120572 26120778 -118161711 - MLT1B LTR MaLR -252 138 1 190 227 45 0 chr12 26122133 26122177 -118160312 - L2 LINE L2 -4 3309 3264 459 0 0 0 chr12 26123972 26124023 -118158466 + (TG)n Simple_repeat Simple_repeat 2 52 0 375 286 191 5 chr12 26124705 26124915 -118157574 - MIR SINE MIR -1 261 13 1679 196 0 0 chr12 26125281 26125587 -118156902 + AluJb SINE Alu 1 306 -6 245 307 123 0 chr12 26125866 26125978 -118156511 + MIR SINE MIR 29 156 -52 1487 191 47 0 chr12 26126023 26126280 -118156209 - AluJo SINE Alu -43 269 1 355 330 147 14 chr12 26126280 26126624 -118155865 + L2 LINE L2 2097 2491 -823 233 270 43 128 chr12 26126715 26127057 -118155432 + L2 LINE L2 2740 3077 -195 256 268 56 108 chr12 26127203 26127453 -118155036 + L2 LINE L2 3029 3265 -7 1875 161 0 19 chr12 26127789 26128105 -118154384 - AluJb SINE Alu -2 310 1 314 200 0 17 chr12 26128949 26129009 -118153480 + MER112 DNA MER1_type 6 64 -196 2305 118 0 3 chr12 26129549 26129862 -118152627 + AluSx SINE Alu 1 312 0 382 211 0 13 chr12 26130066 26130142 -118152347 - MER112 DNA MER1_type 0 260 186 1780 137 3 72 chr12 26130509 26130880 -118151609 - MER4A LTR ERV1 0 664 261 471 167 89 0 chr12 26130880 26130970 -118151519 - MER4A LTR ERV1 -566 98 1 209 137 39 0 chr12 26130974 26131025 -118151464 + CT-rich Low_complexity Low_complexity 5 57 0 1952 106 4 4 chr12 26131032 26131306 -118151183 - AluSx SINE Alu -38 274 1 346 183 0 17 chr12 26131320 26131380 -118151109 - MER112 DNA MER1_type -196 64 6 318 340 27 7 chr12 26131392 26131539 -118150950 - L2 LINE L2 -729 2585 2436 1894 166 0 0 chr12 26132119 26132421 -118150068 - AluJo SINE Alu -10 302 1 2501 118 3 0 chr12 26132509 26132848 -118149641 - L1PA16 LINE L1 -13 6153 5814 535 273 84 44 chr12 26133043 26133489 -118149000 - LTR33A LTR ERVL -2 521 1 735 107 8 14 chr12 26133697 26133942 -118148547 + AluSx SINE Alu 1 293 -17 35 24 0 0 chr12 26133942 26133984 -118148505 + AT_rich Low_complexity Low_complexity 1 42 0 896 104 0 15 chr12 26134131 26134265 -118148224 + FLAM_C SINE Alu 2 133 0 461 192 18 132 chr12 26134293 26134460 -118148029 - MIR SINE MIR -13 249 102 250 230 0 27 chr12 26134750 26134824 -118147665 - MLT1K LTR MaLR -6 582 511 1733 159 0 39 chr12 26134824 26135133 -118147356 + AluJb SINE Alu 2 298 -14 497 280 102 64 chr12 26135162 26135505 -118146984 - MLT1K LTR MaLR -73 515 160 616 268 72 25 chr12 26136414 26136649 -118145840 - MIR SINE MIR -9 253 8 280 283 44 18 chr12 26136648 26136761 -118145728 + L2 LINE L2 3164 3279 -34 * 859 219 0 0 chr12 26136842 26136988 -118145501 - FRAM SINE Alu -30 146 1 22 35 0 0 chr12 26136995 26137024 -118145465 + AT_rich Low_complexity Low_complexity 1 29 0 508 213 28 0 chr12 26137024 26137132 -118145357 - L1MA9 LINE L1 -22 6290 6180 371 208 26 0 chr12 26137135 26137212 -118145277 - L1MA9 LINE L1 -232 6080 6002 292 302 93 8 chr12 26137274 26137403 -118145086 - L2 LINE L2 -9 3304 3165 860 292 211 13 chr12 26137428 26137811 -118144678 - L2 LINE L2 -516 2798 2340 230 254 0 0 chr12 26138213 26138268 -118144221 - L2 LINE L2 -2 3311 3257 185 0 40 0 chr12 26138365 26138390 -118144099 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2312 121 0 13 chr12 26138867 26139181 -118143308 + AluSx SINE Alu 1 310 -2 194 220 17 0 chr12 26140614 26140673 -118141816 + (CA)n Simple_repeat Simple_repeat 1 60 0 371 273 91 8 chr12 26141815 26141936 -118140553 + L1ME3A LINE L1 6020 6150 -20 236 236 0 0 chr12 26141920 26141975 -118140514 - L1MC4 LINE L1 -1340 6702 6648 * 2771 23 3 0 chr12 26143427 26143737 -118138752 + AluY SINE Alu 1 311 0 195 390 10 10 chr12 26143941 26144041 -118138448 + MIR SINE MIR 41 140 -68 2101 210 83 7 chr12 26144079 26144537 -118137952 + MLT1D LTR MaLR 13 505 0 3928 281 56 40 chr12 26144544 26145894 -118136595 + L1MB8 LINE L1 1 1372 -5487 15244 193 20 15 chr12 26145902 26150558 -118131931 + L1PB1 LINE L1 6 5000 -1867 2302 103 6 3 chr12 26150558 26150869 -118131620 + AluSp SINE Alu 1 312 -1 15244 193 20 15 chr12 26150869 26152747 -118129742 + L1PB1 LINE L1 5000 6867 0 1570 235 40 34 chr12 26152757 26153233 -118129256 + L1MB8 LINE L1 1352 1830 -5025 872 154 68 25 chr12 26153282 26153484 -118129005 + L1M4 LINE L1 5246 5455 -723 * 7028 209 37 9 chr12 26153461 26155812 -118126677 + L1MB8 LINE L1 4443 6864 -125 1895 134 24 10 chr12 26155831 26156123 -118126366 + AluJb SINE Alu 5 300 -12 931 150 0 0 chr12 26156598 26156731 -118125758 - FLAM_C SINE Alu 0 133 1 15300 24 1 0 chr12 26156838 26159290 -118123199 - L1PA2 LINE L1 -2 6153 3700 21461 45 51 3 chr12 26159290 26161987 -118120502 - L1PA2 LINE L1 -3319 2827 2 365 294 20 0 chr12 26163169 26163271 -118119218 - MER5A DNA MER1_type -83 106 3 671 280 59 18 chr12 26166049 26166383 -118116106 + MLT1G1 LTR MaLR 3 358 -184 1330 176 19 54 chr12 26167005 26167318 -118115171 - L1MA9 LINE L1 0 6312 6011 336 48 0 0 chr12 26167573 26167615 -118114874 + (TG)n Simple_repeat Simple_repeat 2 43 0 23 0 0 0 chr12 26168435 26168458 -118114031 + AT_rich Low_complexity Low_complexity 1 23 0 1706 153 3 20 chr12 26168508 26168808 -118113681 - AluY SINE Alu -16 295 1 283 235 157 43 chr12 26169263 26169378 -118113111 + MIR SINE MIR 49 176 -86 1365 216 40 63 chr12 26170041 26170421 -118112068 + MLT1A2 LTR MaLR 4 374 0 643 306 108 56 chr12 26170816 26171297 -118111192 - L2 LINE L2 -4 3309 2804 798 225 78 39 chr12 26171350 26171608 -118110881 - MLT1L LTR MaLR -326 289 22 1596 332 128 36 chr12 26171647 26172040 -118110449 - L2 LINE L2 -1000 2314 1959 1435 186 30 30 chr12 26172040 26172335 -118110154 + AluJb SINE Alu 1 295 -17 1596 332 128 36 chr12 26172335 26173272 -118109217 - L2 LINE L2 -1355 1959 869 374 323 134 10 chr12 26173520 26173721 -118108768 + MIR SINE MIR 36 261 -1 21 0 0 0 chr12 26173969 26173990 -118108499 + AT_rich Low_complexity Low_complexity 1 21 0 1472 165 45 36 chr12 26175060 26175369 -118107120 + AluJb SINE Alu 1 312 0 24 0 0 0 chr12 26175590 26175614 -118106875 + AT_rich Low_complexity Low_complexity 1 24 0 275 48 0 24 chr12 26175784 26175826 -118106663 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 351 284 80 0 chr12 26175908 26176070 -118106419 - L1ME4a LINE L1 -3 6118 5944 202 184 0 26 chr12 26176929 26176967 -118105522 - L2 LINE L2 -32 3240 3204 995 196 29 29 chr12 26176999 26177049 -118105440 - MER3 DNA MER1_type 0 209 160 2384 96 0 0 chr12 26177049 26177352 -118105137 - AluSg SINE Alu -7 303 1 995 196 29 29 chr12 26177352 26177510 -118104979 - MER3 DNA MER1_type -48 161 1 479 202 85 23 chr12 26177813 26177942 -118104547 - Charlie7 DNA MER1_type -1923 689 553 2066 108 3 56 chr12 26178237 26178560 -118103929 - AluSc SINE Alu -1 308 3 260 296 14 63 chr12 26178915 26179057 -118103432 + MIR3 SINE MIR 59 193 -15 2172 94 0 36 chr12 26179161 26179470 -118103019 - AluSg SINE Alu -12 298 1 213 333 119 46 chr12 26180804 26181023 -118101466 - MIR SINE MIR -27 235 1 1424 127 0 0 chr12 26182006 26182203 -118100286 + L1PA13 LINE L1 5952 6148 -15 240 323 31 10 chr12 26182207 26182303 -118100186 - L2 LINE L2 -61 3252 3155 1412 172 28 31 chr12 26182549 26182840 -118099649 - MLT1B LTR MaLR 0 390 101 1330 130 0 5 chr12 26182840 26183032 -118099457 - AluJb SINE Alu -13 299 109 442 20 0 0 chr12 26183135 26183185 -118099304 - AluY SINE Alu -258 51 2 370 314 32 8 chr12 26183939 26184063 -118098426 - MIR SINE MIR -118 144 18 287 389 16 0 chr12 26184694 26184820 -118097669 + L2 LINE L2 3145 3272 0 2095 123 7 0 chr12 26184837 26185137 -118097352 + AluSg SINE Alu 1 302 -8 264 167 0 0 chr12 26185457 26185505 -118096984 - MIR SINE MIR -130 132 85 692 261 173 15 chr12 26186163 26186492 -118095997 + LTR50 LTR ERVL 95 475 -320 713 145 14 72 chr12 26187671 26187809 -118094680 + AluJb SINE Alu 5 134 -178 23 0 0 0 chr12 26188003 26188026 -118094463 + AT_rich Low_complexity Low_complexity 1 23 0 180 158 0 0 chr12 26188386 26188424 -118094065 + (CA)n Simple_repeat Simple_repeat 1 38 0 212 29 0 59 chr12 26189551 26189585 -118092904 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 560 221 24 99 chr12 26190708 26190921 -118091568 + L2 LINE L2 3117 3313 0 21 36 0 0 chr12 26191210 26191238 -118091251 + AT_rich Low_complexity Low_complexity 1 28 0 34882 68 7 6 chr12 26191933 26197323 -118085166 - L1PA6 LINE L1 0 6469 1074 1558 176 0 4 chr12 26197314 26197575 -118084914 - L1PA6 LINE L1 -6192 269 10 * 2770 20 0 0 chr12 26197915 26198219 -118084270 + AluYb8 SINE Alu 1 304 -14 23 78 0 0 chr12 26198299 26198350 -118084139 + AT_rich Low_complexity Low_complexity 1 51 0 33 0 0 0 chr12 26198375 26198408 -118084081 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr12 26198616 26198641 -118083848 + AT_rich Low_complexity Low_complexity 1 25 0 347 169 0 17 chr12 26199467 26199526 -118082963 - MER81 DNA DNA -49 65 8 495 0 0 0 chr12 26200106 26200161 -118082328 + (TC)n Simple_repeat Simple_repeat 1 55 0 355 313 147 38 chr12 26201002 26201213 -118081276 + MIR SINE MIR 29 262 0 596 273 120 5 chr12 26202185 26202401 -118080088 + MIR SINE MIR 3 243 -19 360 248 56 16 chr12 26202521 26202646 -118079843 - LTR33 LTR ERVL -2 519 390 285 165 113 122 chr12 26202712 26202827 -118079662 - LTR33 LTR ERVL -258 263 150 266 322 11 0 chr12 26202889 26202979 -118079510 - MLT1I LTR MaLR -254 155 65 449 301 166 10 chr12 26203062 26203261 -118079228 + MIR SINE MIR 20 249 -13 226 281 73 0 chr12 26203946 26204028 -118078461 - L1MC4 LINE L1 -1347 6695 6608 2124 129 0 13 chr12 26204042 26204353 -118078136 - AluSx SINE Alu -4 308 2 2245 112 0 0 chr12 26205567 26205861 -118076628 - AluSq SINE Alu -19 294 1 1353 110 105 5 chr12 26206132 26206341 -118076148 + MER30 DNA MER1_type 1 230 0 459 351 32 63 chr12 26206972 26207257 -118075232 + L2 LINE L2 2995 3270 -2 1330 353 70 27 chr12 26207263 26208429 -118074060 - L2 LINE L2 -337 2977 1761 321 300 72 56 chr12 26209199 26209449 -118073040 - L2 LINE L2 -397 2917 2664 225 332 205 0 chr12 26210292 26210482 -118072007 + MIR SINE MIR 18 246 -16 558 303 65 39 chr12 26210518 26210825 -118071664 - L2 LINE L2 -830 2484 2170 257 192 154 0 chr12 26211198 26211276 -118071213 + L1ME4a LINE L1 5997 6086 -35 198 0 0 0 chr12 26211527 26211549 -118070940 + (TTA)n Simple_repeat Simple_repeat 2 23 0 697 335 89 30 chr12 26211871 26212188 -118070301 + L2 LINE L2 2377 2737 -577 1892 169 0 0 chr12 26212188 26212484 -118070005 + AluJb SINE Alu 1 296 -16 697 335 89 30 chr12 26212484 26212670 -118069819 + L2 LINE L2 2737 2910 -404 401 327 127 23 chr12 26214043 26214343 -118068146 - L2 LINE L2 -834 2480 2150 9847 97 13 1 chr12 26215884 26217153 -118065336 - HSMAR1 DNA Mariner 0 1287 3 4823 135 32 58 chr12 26217822 26219029 -118063460 + pTR5 LTR ERV1 1000 2606 0 244 147 0 0 chr12 26219029 26219063 -118063426 - Alu SINE Alu -269 34 1 211 307 31 71 chr12 26219745 26219826 -118062663 + MIR SINE MIR 129 205 -57 2766 128 34 2 chr12 26219826 26220241 -118062248 + MSTA LTR MaLR 1 428 0 211 307 31 71 chr12 26220241 26220286 -118062203 + MIR SINE MIR 205 250 -12 231 233 41 41 chr12 26220411 26220484 -118062005 + L2 LINE L2 3241 3313 0 558 223 198 0 chr12 26221422 26221527 -118060962 - MER5A DNA MER1_type -1 188 105 2310 223 37 29 chr12 26221527 26222043 -118060446 - MLT2B1 LTR ERVL 0 520 1 558 223 198 0 chr12 26222043 26222094 -118060395 - MER5A DNA MER1_type -84 105 1 463 273 25 66 chr12 26222635 26222833 -118059656 + MIR SINE MIR 9 198 -64 2415 168 10 5 chr12 26222833 26223225 -118059264 + Tigger7 DNA MER2_type 1 394 -339 487 160 245 0 chr12 26223475 26223581 -118058908 + Tigger7 DNA MER2_type 390 521 -212 * 496 149 23 0 chr12 26223580 26223667 -118058822 + Tigger7 DNA MER2_type 2396 2484 -3 216 0 0 0 chr12 26223735 26223759 -118058730 + (TTA)n Simple_repeat Simple_repeat 3 26 0 197 313 16 0 chr12 26223759 26223823 -118058666 + L2 LINE L2 3204 3268 -4 1366 189 134 22 chr12 26225320 26225679 -118056810 - MLT1D LTR MaLR -106 399 1 915 313 58 12 chr12 26226624 26227056 -118055433 + LTR16B LTR ERVL 1 452 -12 1814 153 0 3 chr12 26227072 26227360 -118055129 + AluJb SINE Alu 1 287 -25 29 0 0 0 chr12 26227361 26227390 -118055099 + AT_rich Low_complexity Low_complexity 1 29 0 3271 249 77 46 chr12 26229701 26229775 -118052714 + L1MEc LINE L1 35 105 -6291 1854 172 0 0 chr12 26229775 26230071 -118052418 + AluSx SINE Alu 12 307 -5 3271 249 77 46 chr12 26230071 26230392 -118052097 + L1MEc LINE L1 105 415 -5981 2159 130 0 13 chr12 26230392 26230708 -118051781 + AluSq SINE Alu 1 312 -1 3271 249 77 46 chr12 26230708 26231894 -118050595 + L1MEc LINE L1 415 1666 -4730 32 26 0 0 chr12 26231936 26231975 -118050514 + AT_rich Low_complexity Low_complexity 1 39 0 248 317 0 0 chr12 26232253 26232335 -118050154 + MIR3 SINE MIR 121 202 -6 1831 158 108 6 chr12 26232345 26232687 -118049802 - MSTA LTR MaLR 0 428 52 190 333 0 0 chr12 26232703 26232760 -118049729 - L2 LINE L2 -568 2746 2690 1008 212 8 4 chr12 26232775 26233039 -118049450 - MER33 DNA MER1_type 0 324 60 368 352 28 0 chr12 26233065 26233210 -118049279 - L2 LINE L2 -641 2673 2525 208 254 0 0 chr12 26233363 26233418 -118049071 + T-rich Low_complexity Low_complexity 2 56 0 238 326 11 22 chr12 26233494 26233586 -118048903 - L2 LINE L2 -5 3267 3177 229 157 39 0 chr12 26233633 26233684 -118048805 - MLT2E LTR ERVL -541 87 35 2579 174 24 59 chr12 26233960 26234536 -118047953 + MER89 LTR ERV1 4 559 0 610 316 5 21 chr12 26234635 26234825 -118047664 + MIR SINE MIR 2 188 -74 2651 136 7 14 chr12 26234892 26235312 -118047177 + MSTB LTR MaLR 1 417 -9 8594 165 28 5 chr12 26235323 26236851 -118045638 + MSTB-int LTR MaLR 3 1565 -86 766 153 0 0 chr12 26236885 26237009 -118045480 + MSTA LTR MaLR 3 126 -300 * 1107 160 0 0 chr12 26237007 26237182 -118045307 + MSTA LTR MaLR 254 428 0 474 18 0 0 chr12 26237406 26237461 -118045028 + (CA)n Simple_repeat Simple_repeat 2 56 0 438 299 120 21 chr12 26237814 26238048 -118044441 - MIR SINE MIR -1 261 5 32 75 0 0 chr12 26238407 26238474 -118044015 + AT_rich Low_complexity Low_complexity 1 67 0 2062 161 15 26 chr12 26239854 26240389 -118042100 - LTR10E LTR ERV1 -43 590 1 778 212 54 70 chr12 26240679 26240783 -118041706 - MIR SINE MIR -7 255 151 2301 98 10 0 chr12 26240783 26241090 -118041399 - AluSq SINE Alu 0 313 4 778 212 54 70 chr12 26241090 26241230 -118041259 - MIR SINE MIR -111 151 6 1266 190 97 31 chr12 26241906 26242227 -118040262 + MLT2B1 LTR ERVL 1 342 -178 2853 145 87 19 chr12 26242228 26243008 -118039481 - Charlie1a DNA MER1_type -302 1153 261 728 198 193 0 chr12 26243009 26243201 -118039288 - Charlie1a DNA MER1_type -1213 242 14 886 231 208 23 chr12 26244124 26244471 -118038018 + L2 LINE L2 2889 3299 -14 588 118 0 0 chr12 26244476 26244561 -118037928 + AluS SINE Alu 1 85 -228 368 320 36 89 chr12 26244727 26245008 -118037481 + L2 LINE L2 2997 3262 -10 214 292 226 30 chr12 26245225 26245393 -118037096 - L2 LINE L2 -695 2619 2419 213 327 48 58 chr12 26245851 26245955 -118036534 - MIR3 SINE MIR -37 171 69 429 371 62 11 chr12 26246519 26246794 -118035695 - MLT1K LTR MaLR -298 290 2 1307 171 39 7 chr12 26247241 26247543 -118034946 + MER61B LTR ERV1 1 396 -29 237 311 117 10 chr12 26248007 26248110 -118034379 + L2 LINE L2 3187 3300 -13 363 250 16 8 chr12 26248603 26248727 -118033762 + L1MC4a LINE L1 5689 5813 -1995 279 0 0 0 chr12 26248821 26248852 -118033637 + (CA)n Simple_repeat Simple_repeat 2 32 0 28 48 0 0 chr12 26249263 26249305 -118033184 + AT_rich Low_complexity Low_complexity 1 42 0 392 219 293 0 chr12 26249374 26249538 -118032951 + L1MC4a LINE L1 6558 6769 -1039 807 242 26 65 chr12 26249540 26249932 -118032557 + L1MC5 LINE L1 6881 7176 -632 294 314 8 8 chr12 26249926 26250044 -118032445 + L1MC4a LINE L1 7241 7358 -450 * 793 231 135 65 chr12 26250089 26250703 -118031786 + L1MC5 LINE L1 7261 7917 -44 276 226 70 181 chr12 26251659 26251902 -118030587 + MIR SINE MIR 15 230 -32 762 273 26 22 chr12 26252034 26252301 -118030188 + MLT1J LTR MaLR 42 309 -202 266 327 190 10 chr12 26253472 26253677 -118028812 - L3b LINE CR1 -240 1343 1102 1724 160 7 14 chr12 26253686 26253979 -118028510 + AluJb SINE Alu 1 291 -21 192 135 0 0 chr12 26254115 26254152 -118028337 + (CA)n Simple_repeat Simple_repeat 1 37 0 296 269 274 20 chr12 26254445 26254646 -118027843 - MIR SINE MIR -9 253 2 856 178 16 5 chr12 26255173 26255358 -118027131 + MER53 DNA DNA 1 187 -2 21 0 0 0 chr12 26255432 26255453 -118027036 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 26255497 26255521 -118026968 + AT_rich Low_complexity Low_complexity 1 24 0 2189 79 0 0 chr12 26255564 26255879 -118026610 + AluY SINE Alu 1 315 0 2608 191 12 60 chr12 26255892 26256220 -118026269 + L1MDb LINE L1 543 828 -5581 1884 75 90 36 chr12 26256220 26256499 -118025990 + AluSx SINE Alu 1 294 -18 2608 191 12 60 chr12 26256499 26256808 -118025681 + L1MDb LINE L1 828 1150 -5259 7661 23 0 0 chr12 26257436 26258354 -118024135 + L1PA3 LINE L1 5254 6171 0 312 277 67 0 chr12 26258364 26258483 -118024006 + L1 LINE L1 4367 4493 -1653 248 209 0 0 chr12 26258521 26258564 -118023925 - L2 LINE L2 -8 3264 3222 * 584 231 81 12 chr12 26258532 26258692 -118023797 - MIR SINE MIR -13 249 79 * 1720 256 164 26 chr12 26258689 26259374 -118023115 + L2 LINE L2 1088 1866 -1448 423 244 174 6 chr12 26259378 26259550 -118022939 + L2 LINE L2 2170 2370 -944 430 285 76 44 chr12 26259555 26260012 -118022477 - LTR33 LTR ERVL -2 519 1 616 285 124 10 chr12 26260012 26260310 -118022179 + L2 LINE L2 2371 2702 -612 3330 247 100 18 chr12 26260311 26261251 -118021238 - L1MEc LINE L1 -2731 4226 3128 216 67 0 0 chr12 26261251 26261281 -118021208 + (TA)n Simple_repeat Simple_repeat 1 30 0 3330 247 100 18 chr12 26261281 26261926 -118020563 - L1MEc LINE L1 -3829 3128 2537 1585 268 50 24 chr12 26262134 26262816 -118019673 - L1MEc LINE L1 -4480 2479 1780 260 241 0 0 chr12 26262803 26262861 -118019628 - L1MEc LINE L1 -5673 1186 1129 * 2586 111 58 0 chr12 26263066 26263482 -118019007 + MER75 DNA T2_type 75 514 0 411 301 131 22 chr12 26263660 26263843 -118018646 + L2 LINE L2 2868 3070 -243 69 24 0 0 chr12 26263859 26263942 -118018547 + AT_rich Low_complexity Low_complexity 1 83 0 265 329 49 0 chr12 26264020 26264102 -118018387 + L2 LINE L2 3223 3308 -5 21 36 0 0 chr12 26264732 26264760 -118017729 + AT_rich Low_complexity Low_complexity 1 28 0 211 283 152 43 chr12 26266272 26266364 -118016125 - L2 LINE L2 -9 3263 3162 743 289 95 4 chr12 26266386 26266618 -118015871 + MIR SINE MIR 9 261 -1 756 301 137 12 chr12 26266620 26266725 -118015764 - L2 LINE L2 -121 3192 3102 2299 129 5 45 chr12 26266725 26267104 -118015385 - THE1B LTR MaLR 0 364 1 756 301 137 12 chr12 26267104 26267340 -118015149 - L2 LINE L2 -211 3102 2808 517 225 33 0 chr12 26267973 26268093 -118014396 + MER94 DNA DNA 1 124 -10 895 309 80 19 chr12 26268121 26268208 -118014281 - L2 LINE L2 -528 2786 2706 3749 138 29 69 chr12 26268208 26268967 -118013522 + L1MA9 LINE L1 5544 6332 20 1849 140 11 0 chr12 26268967 26269232 -118013257 - AluSx SINE Alu -44 268 1 230 0 33 0 chr12 26269241 26269271 -118013218 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3749 138 29 69 chr12 26269271 26269301 -118013188 + L1MA9 LINE L1 6281 6311 -1 895 309 80 19 chr12 26269301 26269576 -118012913 - L2 LINE L2 -608 2706 2402 675 258 60 32 chr12 26269649 26269901 -118012588 - MIR SINE MIR -2 260 2 2589 58 0 0 chr12 26270139 26270447 -118012042 + AluY SINE Alu 1 308 -3 440 294 75 32 chr12 26270606 26270742 -118011747 + MIR SINE MIR 15 163 -99 1297 273 60 19 chr12 26270742 26271174 -118011315 + MLT1J2 LTR MaLR 1 450 0 440 294 75 32 chr12 26271174 26271224 -118011265 + MIR SINE MIR 163 209 -53 1094 225 13 114 chr12 26271482 26271878 -118010611 - MLT1A1 LTR MaLR 0 365 10 492 18 0 0 chr12 26273768 26273825 -118008664 + (CA)n Simple_repeat Simple_repeat 2 58 0 195 314 57 81 chr12 26275123 26275247 -118007242 + L3b LINE CR1 1190 1310 -273 706 283 70 4 chr12 26276086 26276316 -118006173 - MIR SINE MIR 0 262 18 1357 223 225 17 chr12 26276571 26277418 -118005071 - L1MC4 LINE L1 -98 7710 6731 363 248 264 0 chr12 26277461 26277590 -118004899 - L1MC4a LINE L1 -1205 6603 6441 1335 244 115 26 chr12 26278462 26278995 -118003494 + L1ME3A LINE L1 5337 5932 -238 1327 176 61 29 chr12 26279174 26279453 -118003036 - AluJo SINE Alu -22 290 3 37 39 0 0 chr12 26279485 26279536 -118002953 + AT_rich Low_complexity Low_complexity 1 51 0 180 401 23 23 chr12 26279687 26279819 -118002670 - MIR3 SINE MIR -67 141 10 246 348 177 6 chr12 26279836 26279994 -118002495 - MIR SINE MIR -57 205 21 281 336 30 37 chr12 26280248 26280382 -118002107 - MIR3 SINE MIR -66 142 10 496 228 92 43 chr12 26281245 26281429 -118001060 - MIR SINE MIR -10 252 60 356 210 241 25 chr12 26282192 26282354 -118000135 - L2 LINE L2 -19 3294 3098 276 241 0 51 chr12 26282381 26282460 -118000029 + (CAGAGA)n Simple_repeat Simple_repeat 4 78 0 265 293 0 12 chr12 26283197 26283279 -117999210 - MIR SINE MIR -11 251 171 1758 163 6 45 chr12 26283472 26283785 -117998704 + AluJo SINE Alu 1 301 -11 288 306 219 10 chr12 26285410 26285606 -117996883 + MIR SINE MIR 20 256 -6 5797 250 112 17 chr12 26285672 26287348 -117995141 + L1ME1 LINE L1 47 1958 -4257 2352 84 0 3 chr12 26287348 26287647 -117994842 + AluSc SINE Alu 1 298 -11 5797 250 112 17 chr12 26287647 26288369 -117994120 + L1ME1 LINE L1 1958 2610 -3605 282 235 27 94 chr12 26288411 26288560 -117993929 + L1ME1 LINE L1 4914 5052 -1163 2680 199 45 12 chr12 26288577 26289316 -117993173 + L1ME1 LINE L1 5210 5979 -256 1184 260 67 23 chr12 26289316 26289662 -117992827 - MLT1A1 LTR MaLR -4 361 1 567 246 45 61 chr12 26289662 26289926 -117992563 + L1ME1 LINE L1 5971 6230 -5 465 242 20 13 chr12 26290055 26290204 -117992285 + MER103 DNA DNA 1 150 -16 878 150 8 0 chr12 26290368 26290501 -117991988 + AluJo SINE Alu 1 134 -178 5747 169 43 23 chr12 26290651 26290920 -117991569 - L1MC2 LINE L1 -9 6335 6073 1652 167 3 43 chr12 26290920 26291219 -117991270 + AluJo SINE Alu 15 301 -11 5747 169 43 23 chr12 26291219 26292648 -117989841 - L1MC2 LINE L1 -271 6073 4602 1943 144 17 0 chr12 26292648 26292939 -117989550 - AluSx SINE Alu -16 296 1 5747 169 43 23 chr12 26292939 26293011 -117989478 - L1MC2 LINE L1 -1742 4602 4533 200 290 81 0 chr12 26293309 26293371 -117989118 + L2 LINE L2 3206 3272 0 403 308 89 0 chr12 26294669 26294815 -117987674 + MIR3 SINE MIR 44 202 -6 273 300 70 0 chr12 26294948 26295048 -117987441 - MIR3 SINE MIR -8 200 94 1920 220 149 24 chr12 26295715 26296334 -117986155 - L1ME3A LINE L1 -5 6165 5470 1799 154 3 25 chr12 26297156 26297565 -117984924 - AluJo SINE Alu 0 402 1 268 240 117 76 chr12 26298213 26298384 -117984105 - MIR SINE MIR 0 262 85 1766 28 5 0 chr12 26298691 26298903 -117983586 + L1PA5 LINE L1 5940 6152 -2 208 339 37 46 chr12 26299457 26299566 -117982923 + L3b LINE CR1 1296 1403 -180 348 271 62 62 chr12 26299566 26299620 -117982869 - MIR SINE MIR -3 259 206 1633 144 0 115 chr12 26299620 26299959 -117982530 - AluJo SINE Alu -2 300 1 348 271 62 62 chr12 26299959 26300081 -117982408 - MIR SINE MIR -55 207 83 1700 199 0 0 chr12 26300191 26300488 -117982001 + AluJb SINE Alu 1 297 -15 424 208 66 28 chr12 26300501 26300607 -117981882 + MER103 DNA DNA 13 122 -44 1750 119 128 16 chr12 26301568 26301887 -117980602 - MER47A DNA MER2_type 0 366 12 1883 150 0 17 chr12 26301929 26302229 -117980260 - AluSx SINE Alu -17 295 1 230 300 91 36 chr12 26302377 26302487 -117980002 + L2 LINE L2 3198 3313 0 2646 51 0 0 chr12 26302674 26302985 -117979504 + AluY SINE Alu 1 311 0 207 0 0 0 chr12 26303978 26304001 -117978488 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2222 96 3 0 chr12 26304038 26304340 -117978149 - AluSp SINE Alu 0 303 1 322 206 112 47 chr12 26305998 26306105 -117976384 + MIR SINE MIR 2 115 -147 644 213 82 39 chr12 26306188 26306395 -117976094 + MIR SINE MIR 44 259 -3 253 200 62 0 chr12 26307326 26307406 -117975083 + (TA)n Simple_repeat Simple_repeat 1 85 0 1923 158 0 3 chr12 26307734 26308026 -117974463 + AluJo SINE Alu 1 291 -21 204 191 16 32 chr12 26308050 26308113 -117974376 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 627 190 22 10 chr12 26308114 26308337 -117974152 - 7SK RNA RNA -5 188 1 285 284 0 0 chr12 26308804 26308871 -117973618 + L2 LINE L2 3245 3311 -2 255 426 25 0 chr12 26310581 26310703 -117971786 - L2 LINE L2 -12 3260 3136 2175 131 0 3 chr12 26310706 26311019 -117971470 + AluSx SINE Alu 1 312 0 615 293 17 6 chr12 26311213 26311387 -117971102 - MIR SINE MIR -10 252 77 1969 130 0 0 chr12 26311413 26311682 -117970807 + AluSx SINE Alu 3 271 -41 505 247 74 12 chr12 26311707 26311869 -117970620 + MER3 DNA MER1_type 1 125 -84 531 333 36 0 chr12 26312401 26312566 -117969923 - MIR SINE MIR -71 191 21 217 274 55 0 chr12 26313501 26313574 -117968915 - MIR SINE MIR -10 252 176 943 238 59 4 chr12 26313720 26313976 -117968513 + LTR16A LTR ERVL 181 450 0 317 258 34 83 chr12 26313987 26314133 -117968356 - MIR SINE MIR -63 145 20 924 138 0 0 chr12 26314272 26314402 -117968087 - FLAM_C SINE Alu -13 130 1 1484 201 18 4 chr12 26314485 26314764 -117967725 + AluJo SINE Alu 5 287 -25 216 111 0 0 chr12 26315243 26315279 -117967210 + (TG)n Simple_repeat Simple_repeat 1 36 0 219 69 0 0 chr12 26315279 26315308 -117967181 + (GA)n Simple_repeat Simple_repeat 2 30 0 187 209 93 0 chr12 26315668 26315711 -117966778 - L2 LINE L2 -8 3305 3259 2062 142 0 3 chr12 26315811 26316114 -117966375 + AluSx SINE Alu 1 302 -10 646 272 78 94 chr12 26316142 26316576 -117965913 - Charlie8 DNA MER1_type -1987 430 4 188 274 0 20 chr12 26316578 26316629 -117965860 + L3b LINE CR1 1531 1580 -3 344 233 14 0 chr12 26317184 26317257 -117965232 + MIR SINE MIR 74 147 -115 885 73 0 0 chr12 26317288 26317397 -117965092 + FLAM_C SINE Alu 3 111 -32 213 39 0 0 chr12 26317398 26317424 -117965065 + (TC)n Simple_repeat Simple_repeat 1 26 0 21 36 0 0 chr12 26318231 26318259 -117964230 + AT_rich Low_complexity Low_complexity 1 28 0 591 27 0 0 chr12 26319521 26319594 -117962895 + (CA)n Simple_repeat Simple_repeat 2 74 0 2478 51 0 13 chr12 26320283 26320595 -117961894 - AluY SINE Alu -3 308 1 369 314 48 93 chr12 26320889 26321137 -117961352 - L2 LINE L2 -3 3269 3033 571 286 47 21 chr12 26321150 26321342 -117961147 + L2 LINE L2 3115 3311 -2 797 323 89 34 chr12 26321374 26321934 -117960555 - L2 LINE L2 -509 2805 2215 198 118 0 0 chr12 26322639 26322673 -117959816 + (TC)n Simple_repeat Simple_repeat 1 34 0 3745 115 36 28 chr12 26322710 26323312 -117959177 - MER4B LTR ERV1 0 610 4 21 57 0 0 chr12 26323424 26323459 -117959030 + AT_rich Low_complexity Low_complexity 1 35 0 257 390 67 18 chr12 26323606 26323829 -117958660 - L2 LINE L2 -1379 1935 1702 376 252 214 8 chr12 26325266 26325397 -117957092 - MER5A DNA MER1_type -6 183 26 365 286 211 0 chr12 26327955 26328154 -117954335 - MIR SINE MIR -1 261 21 2543 23 7 3 chr12 26328319 26328618 -117953871 + AluY SINE Alu 1 300 -11 790 252 109 53 chr12 26328838 26329552 -117952937 + L1ME3A LINE L1 5178 5933 -237 709 102 0 0 chr12 26329744 26329852 -117952637 - L1MB3 LINE L1 -1 6182 6075 21 36 0 0 chr12 26330958 26330986 -117951503 + AT_rich Low_complexity Low_complexity 1 28 0 354 128 51 34 chr12 26331590 26331707 -117950782 + (CATATA)n Simple_repeat Simple_repeat 1 119 0 22 70 0 0 chr12 26334997 26335040 -117947449 + AT_rich Low_complexity Low_complexity 1 43 0 385 313 177 35 chr12 26336771 26337139 -117945350 - L2 LINE L2 -549 2765 2346 2497 164 16 5 chr12 26337478 26337911 -117944578 + L1PA16 LINE L1 5729 6166 0 194 351 0 0 chr12 26338522 26338579 -117943910 - L2 LINE L2 -8 3264 3208 200 295 66 0 chr12 26338641 26338702 -117943787 - MIR SINE MIR 0 262 198 1189 157 35 88 chr12 26338812 26338857 -117943632 - L1MB5 LINE L1 0 6174 6128 1995 75 0 61 chr12 26338857 26339136 -117943353 + AluY SINE Alu 37 298 -13 1189 157 35 88 chr12 26339136 26339409 -117943080 - L1MB5 LINE L1 -46 6128 5873 712 157 0 46 chr12 26339489 26339642 -117942847 + L1PA16 LINE L1 5696 5841 -325 * 2373 199 18 26 chr12 26339635 26340208 -117942281 - L1MB5 LINE L1 -298 5876 5309 211 192 231 0 chr12 26340209 26340261 -117942228 + MIR SINE MIR 167 230 -32 204 382 182 18 chr12 26341398 26341563 -117940926 - L3b LINE CR1 -6 1577 1386 1951 115 11 0 chr12 26341983 26342253 -117940236 + AluSq SINE Alu 1 273 -40 59 15 0 0 chr12 26342253 26342319 -117940170 + AT_rich Low_complexity Low_complexity 1 66 0 983 169 17 39 chr12 26342319 26342497 -117939992 + AluJb SINE Alu 122 295 -17 25 0 0 0 chr12 26342498 26342523 -117939966 + AT_rich Low_complexity Low_complexity 1 25 0 29 60 0 0 chr12 26342998 26343048 -117939441 + AT_rich Low_complexity Low_complexity 1 50 0 251 282 70 70 chr12 26343249 26343356 -117939133 - MER5A DNA MER1_type -5 184 75 1990 159 3 0 chr12 26343356 26343657 -117938832 - AluJb SINE Alu -10 302 1 251 282 70 70 chr12 26343657 26343691 -117938798 - MER5A DNA MER1_type -113 76 43 1072 291 53 28 chr12 26343992 26344139 -117938350 + LTR16C LTR ERVL 4 146 -345 1753 177 26 7 chr12 26344139 26344444 -117938045 + AluJo SINE Alu 1 311 -1 1072 291 53 28 chr12 26344444 26344729 -117937760 + LTR16C LTR ERVL 146 447 -44 2336 107 3 0 chr12 26344729 26345029 -117937460 - AluSc SINE Alu -8 301 1 21 0 0 0 chr12 26345038 26345059 -117937430 + AT_rich Low_complexity Low_complexity 1 21 0 1704 61 22 13 chr12 26345065 26345296 -117937193 - L1PA7 LINE L1 0 6154 5922 314 167 0 0 chr12 26345298 26345346 -117937143 + LTR16C LTR ERVL 436 483 -8 23 0 0 0 chr12 26345672 26345695 -117936794 + AT_rich Low_complexity Low_complexity 1 23 0 1389 72 0 0 chr12 26345740 26345907 -117936582 + AluYa5 SINE Alu 133 299 -12 695 197 46 83 chr12 26345998 26346216 -117936273 - MER63A DNA MER1_type 0 210 1 829 273 148 11 chr12 26346404 26346770 -117935719 + Charlie2a DNA MER1_type 59 474 -2308 799 193 67 33 chr12 26346769 26347039 -117935450 + Charlie2a DNA MER1_type 734 1012 -1850 * 370 252 0 19 chr12 26347045 26347152 -117935337 + Charlie2a DNA MER1_type 2748 2852 -10 2007 152 0 0 chr12 26350594 26350890 -117931599 - AluJb SINE Alu -16 296 1 202 324 0 0 chr12 26351868 26351934 -117930555 + MIR SINE MIR 88 131 -77 1946 114 63 23 chr12 26351968 26352267 -117930222 - AluSx SINE Alu -1 311 1 21 0 0 0 chr12 26352357 26352378 -117930111 + AT_rich Low_complexity Low_complexity 1 21 0 2062 137 3 0 chr12 26352922 26353215 -117929274 - AluJo SINE Alu -17 295 2 2174 204 39 0 chr12 26354108 26354569 -117927920 - MLT1E2 LTR MaLR -11 615 137 1349 80 0 60 chr12 26354696 26354897 -117927592 + AluSg/x SINE Alu 122 310 0 1623 80 38 0 chr12 26355117 26355356 -117927133 - L1MA1 LINE L1 0 6302 6055 960 190 6 0 chr12 26356469 26356627 -117925862 + AluJb SINE Alu 137 295 -17 449 274 137 25 chr12 26357353 26357557 -117924932 + MIR SINE MIR 24 250 -12 232 339 80 9 chr12 26357735 26357847 -117924642 - MIR3 SINE MIR -2 206 87 450 280 53 0 chr12 26358476 26358608 -117923881 - MIR SINE MIR -55 207 69 187 260 80 0 chr12 26358659 26358709 -117923780 - MER5A DNA MER1_type 0 189 136 622 228 0 16 chr12 26358724 26358847 -117923642 + FLAM_A SINE Alu 1 121 -12 300 324 0 27 chr12 26359509 26359620 -117922869 + MIR SINE MIR 68 175 -87 21 57 0 0 chr12 26359903 26359938 -117922551 + AT_rich Low_complexity Low_complexity 1 35 0 1740 185 7 10 chr12 26359954 26360252 -117922237 - AluJo SINE Alu -15 297 1 224 138 64 11 chr12 26360262 26360356 -117922133 + (TA)n Simple_repeat Simple_repeat 1 99 0 245 362 63 35 chr12 26361059 26361374 -117921115 + L2 LINE L2 2330 2653 -661 335 274 21 0 chr12 26362364 26362459 -117920030 - MIR SINE MIR -102 160 64 495 358 6 6 chr12 26363922 26364084 -117918405 - MIR3 SINE MIR -13 195 34 298 234 162 9 chr12 26364086 26364197 -117918292 - MIR SINE MIR 0 262 135 258 217 58 0 chr12 26364534 26364603 -117917886 + L1ME LINE L1 1107 1179 -5193 454 265 104 25 chr12 26364614 26365128 -117917361 + L1ME LINE L1 1136 1683 -4701 669 312 66 41 chr12 26365176 26365330 -117917159 + L1ME LINE L1 2175 2324 -4239 691 193 0 30 chr12 26365330 26365465 -117917024 + FLAM_C SINE Alu 1 131 -2 669 312 66 41 chr12 26365465 26365704 -117916785 + L1ME LINE L1 2324 2578 -3985 338 291 27 6 chr12 26366078 26366234 -117916255 + L1ME3A LINE L1 5961 6119 -50 216 220 17 0 chr12 26366243 26366302 -117916187 + (TA)n Simple_repeat Simple_repeat 1 60 0 473 250 88 14 chr12 26366809 26366957 -117915532 - MIR SINE MIR -57 205 47 998 235 65 9 chr12 26368942 26369172 -117913317 + MIR SINE MIR 20 262 0 1863 130 3 52 chr12 26369296 26369603 -117912886 + AluJb SINE Alu 11 302 -10 860 160 7 0 chr12 26370233 26370383 -117912106 - MER3 DNA MER1_type -57 152 2 320 266 67 14 chr12 26370479 26370621 -117911868 + L1MC/D LINE L1 5679 5824 -379 515 238 8 16 chr12 26370621 26370743 -117911746 + MER21B LTR ERV1 329 449 -414 239 147 120 27 chr12 26370739 26370814 -117911675 - Zaphod DNA AcHobo -148 3883 3802 * 2247 117 0 3 chr12 26370821 26371120 -117911369 + AluSx SINE Alu 1 298 -14 21 57 0 0 chr12 26371257 26371292 -117911197 + AT_rich Low_complexity Low_complexity 1 35 0 251 262 0 0 chr12 26371367 26371428 -117911061 - MER96 DNA MER1_type? -114 61 1 2305 109 0 13 chr12 26371521 26371832 -117910657 - AluSx SINE Alu -5 307 1 28 29 0 0 chr12 26373149 26373184 -117909305 + AT_rich Low_complexity Low_complexity 1 35 0 29 0 0 0 chr12 26374188 26374217 -117908272 + AT_rich Low_complexity Low_complexity 1 29 0 230 236 124 67 chr12 26374567 26374656 -117907833 + MIR3 SINE MIR 109 202 -6 1597 176 50 4 chr12 26374728 26375006 -117907483 - AluJo SINE Alu -21 291 1 1079 302 45 36 chr12 26375110 26375692 -117906797 - MLT1K LTR MaLR 0 588 2 2291 98 3 0 chr12 26375860 26376157 -117906332 - AluSp SINE Alu -15 298 1 1850 158 14 4 chr12 26376293 26376616 -117905873 + AluJb SINE Alu 1 301 -11 1945 144 20 7 chr12 26377571 26377877 -117904612 + AluSx SINE Alu 1 310 -2 213 264 0 0 chr12 26377913 26377985 -117904504 + (TA)n Simple_repeat Simple_repeat 2 73 0 473 258 45 67 chr12 26378461 26378639 -117903850 + MIR SINE MIR 8 181 -81 338 362 28 11 chr12 26378986 26379163 -117903326 - L3b LINE CR1 -49 1534 1355 1820 155 0 20 chr12 26379168 26379472 -117903017 + AluJo SINE Alu 1 298 -14 646 214 71 18 chr12 26379776 26379944 -117902545 - MER5B DNA MER1_type -1 177 1 28 0 0 0 chr12 26380395 26380423 -117902066 + AT_rich Low_complexity Low_complexity 1 28 0 1885 142 0 14 chr12 26380423 26380719 -117901770 - AluJb SINE Alu -2 310 19 354 271 42 42 chr12 26380909 26381075 -117901414 - L2 LINE L2 -5 3308 3143 226 296 52 87 chr12 26381682 26381797 -117900692 - L2 LINE L2 -8 3264 3154 2639 151 13 0 chr12 26382550 26382948 -117899541 + MER57A LTR ERV1 1 403 0 183 42 0 0 chr12 26383015 26383039 -117899450 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1254 155 21 0 chr12 26383041 26383235 -117899254 - AluJo SINE Alu -29 283 86 1480 123 110 72 chr12 26383497 26383789 -117898700 - AluSq SINE Alu -10 303 1 2117 93 14 0 chr12 26385153 26385470 -117897019 + AluSx SINE Alu 1 321 0 869 208 6 0 chr12 26385596 26385764 -117896725 + FRAM SINE Alu 1 168 -8 2576 54 0 16 chr12 26385815 26386131 -117896358 + AluY SINE Alu 1 311 0 2161 142 0 0 chr12 26386181 26386490 -117895999 + AluSx SINE Alu 1 309 -3 283 358 78 36 chr12 26386499 26386834 -117895655 - L2 LINE L2 -798 2516 2168 21 0 0 0 chr12 26387556 26387577 -117894912 + AT_rich Low_complexity Low_complexity 1 21 0 212 298 96 11 chr12 26387923 26388017 -117894472 + L2 LINE L2 3211 3312 -1 240 385 195 5 chr12 26388601 26388801 -117893688 - L2 LINE L2 -50 3222 2985 209 301 32 32 chr12 26389136 26389229 -117893260 - L2 LINE L2 -650 2664 2572 910 235 111 37 chr12 26389541 26390110 -117892379 + L2 LINE L2 2688 3313 0 344 206 0 0 chr12 26390984 26391052 -117891437 - MER94 DNA DNA -63 71 4 688 335 77 11 chr12 26391095 26391471 -117891018 - L1MC/D LINE L1 -2028 5780 5380 2370 107 0 0 chr12 26392210 26392520 -117889969 + AluSx SINE Alu 3 312 0 464 233 167 6 chr12 26393932 26394112 -117888377 + MIR SINE MIR 54 262 0 413 339 49 27 chr12 26394261 26394485 -117888004 + L1ME LINE L1 5514 5742 -379 1915 148 0 0 chr12 26394533 26394817 -117887672 + AluJb SINE Alu 4 287 -25 1761 177 21 0 chr12 26394862 26395145 -117887344 + AluJb SINE Alu 11 299 -13 7020 205 89 61 chr12 26395146 26396595 -117885894 + L1MDa LINE L1 74 1599 -4941 1583 194 0 7 chr12 26396595 26396883 -117885606 - AluJb SINE Alu -18 294 9 7020 205 89 61 chr12 26396883 26397504 -117884985 + L1MDa LINE L1 1599 2201 -4339 1983 214 76 13 chr12 26397530 26398072 -117884417 + L1MB8 LINE L1 3628 4203 -1943 2946 169 33 76 chr12 26398136 26398181 -117884308 + L1MB8 LINE L1 4613 4658 -1488 1788 155 3 3 chr12 26398181 26398465 -117884024 + AluSx SINE Alu 1 284 -28 456 19 0 0 chr12 26398465 26398518 -117883971 + (TA)n Simple_repeat Simple_repeat 2 54 0 2946 169 33 76 chr12 26398518 26399207 -117883282 + L1MB8 LINE L1 4656 5316 -830 2307 102 0 9 chr12 26399222 26399537 -117882952 - AluSq SINE Alu -1 312 1 1263 120 65 132 chr12 26399563 26399711 -117882778 + AluJb SINE Alu 1 117 -195 273 57 0 0 chr12 26399711 26399746 -117882743 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 1263 120 65 132 chr12 26399746 26399922 -117882567 + AluJb SINE Alu 117 303 -9 933 153 11 17 chr12 26399926 26400102 -117882387 + L1MB8 LINE L1 5733 5907 -271 3153 29 0 0 chr12 26400102 26400449 -117882040 + L1PA4 LINE L1 5803 6152 -3 1256 173 3 93 chr12 26400464 26400542 -117881947 + L1MB8 LINE L1 5894 5977 -201 1379 142 16 199 chr12 26400542 26400908 -117881581 + AluJb SINE Alu 1 299 -3 1256 173 3 93 chr12 26400908 26401142 -117881347 + L1MB8 LINE L1 5977 6178 0 21 36 0 0 chr12 26401382 26401410 -117881079 + AT_rich Low_complexity Low_complexity 1 28 0 596 269 11 119 chr12 26401946 26402085 -117880404 - MIR SINE MIR 0 262 168 1668 187 4 0 chr12 26402085 26402363 -117880126 - AluJo SINE Alu -33 279 1 596 269 11 119 chr12 26402363 26402509 -117879980 - MIR SINE MIR -94 168 8 210 254 0 0 chr12 26403573 26403640 -117878849 + GA-rich Low_complexity Low_complexity 2 68 0 3401 118 114 7 chr12 26405186 26405737 -117876752 - MER4B LTR ERV1 0 610 1 22 70 0 0 chr12 26405856 26405899 -117876590 + AT_rich Low_complexity Low_complexity 1 43 0 241 234 91 39 chr12 26406350 26406427 -117876062 + L2 LINE L2 3186 3266 -6 189 0 0 0 chr12 26406780 26406801 -117875688 + (CA)n Simple_repeat Simple_repeat 2 22 0 430 362 19 10 chr12 26406848 26407055 -117875434 + L2 LINE L2 2105 2313 -1001 259 24 24 24 chr12 26407088 26407129 -117875360 + (TTA)n Simple_repeat Simple_repeat 2 42 0 863 132 0 0 chr12 26407129 26407250 -117875239 - FLAM_C SINE Alu -22 121 1 779 202 161 16 chr12 26407399 26407592 -117874897 + MER58A DNA MER1_type 4 224 0 2216 225 13 47 chr12 26407787 26407871 -117874618 + LTR40a LTR ERVL 1 86 -433 2340 82 0 3 chr12 26407871 26408174 -117874315 - AluY SINE Alu -9 302 1 2216 225 13 47 chr12 26408174 26408626 -117873863 + LTR40a LTR ERVL 86 519 0 187 424 40 0 chr12 26409045 26409144 -117873345 + L2 LINE L2 3123 3225 -47 201 129 0 0 chr12 26409166 26409197 -117873292 + (AACTG)n Simple_repeat Simple_repeat 5 35 0 23 0 0 0 chr12 26409234 26409257 -117873232 + AT_rich Low_complexity Low_complexity 1 23 0 2267 114 0 7 chr12 26409263 26409570 -117872919 - AluSx SINE Alu -7 305 1 2158 110 31 0 chr12 26409832 26410122 -117872367 + AluSx SINE Alu 1 299 -13 2345 100 7 0 chr12 26410158 26410468 -117872021 - AluSx SINE Alu 0 312 1 1279 181 80 16 chr12 26410897 26411411 -117871078 + LTR29 LTR ERV1 1 595 0 4051 139 19 25 chr12 26412116 26412755 -117869734 + MER41B LTR ERV1 1 635 0 311 182 15 0 chr12 26412828 26412894 -117869595 + MER52A LTR ERV1 1 67 -1688 5273 193 139 62 chr12 26413066 26414667 -117867822 + MER52A LTR ERV1 31 1755 0 1731 130 82 4 chr12 26414816 26415085 -117867404 + AluSx SINE Alu 1 290 -22 1347 153 0 44 chr12 26415610 26415839 -117866650 - AluJo SINE Alu -2 310 92 4925 127 53 21 chr12 26415953 26416708 -117865781 + MER4E LTR ERV1 1 779 0 226 293 0 0 chr12 26417771 26417829 -117864660 - MIR SINE MIR -122 140 83 275 230 90 40 chr12 26417891 26417991 -117864498 + MER46C DNA MER2_type 2 106 -232 1914 140 11 3 chr12 26417992 26418277 -117864212 + AluSx SINE Alu 1 287 -25 1744 178 21 0 chr12 26418322 26418603 -117863886 + AluJb SINE Alu 11 297 -15 317 333 14 27 chr12 26418780 26418927 -117863562 + L1MDa LINE L1 273 417 -6123 26 30 0 0 chr12 26419129 26419162 -117863327 + GC_rich Low_complexity Low_complexity 1 33 0 222 62 0 0 chr12 26419431 26419463 -117863026 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 1713 113 73 0 chr12 26419466 26419713 -117862776 - AluSq SINE Alu -48 265 1 305 243 19 29 chr12 26419849 26419952 -117862537 - MLT1L LTR MaLR -22 593 492 2159 96 21 10 chr12 26420567 26420858 -117861631 + AluSg SINE Alu 1 294 -16 2163 127 7 0 chr12 26421089 26421396 -117861093 + AluSp SINE Alu 1 309 -4 4963 211 30 11 chr12 26421719 26422768 -117859721 + L1PBa LINE L1 374 1442 -5421 311 143 0 0 chr12 26423249 26423298 -117859191 + HSMAR2 DNA Mariner 828 876 -426 895 173 0 0 chr12 26423344 26423477 -117859012 + FLAM_C SINE Alu 1 133 0 576 323 97 66 chr12 26423508 26424118 -117858371 - L2 LINE L2 -910 2404 1772 1942 151 0 16 chr12 26424118 26424429 -117858060 + AluJb SINE Alu 1 306 -6 576 323 97 66 chr12 26424429 26424458 -117858031 - L2 LINE L2 -1542 1772 1745 441 354 107 35 chr12 26424815 26425416 -117857073 - L2 LINE L2 -428 2886 2243 473 317 147 33 chr12 26425492 26426037 -117856452 - L2 LINE L2 -1970 1344 738 2184 121 7 0 chr12 26426270 26426576 -117855913 - AluSp SINE Alu -4 309 2 24 32 0 0 chr12 26426576 26426607 -117855882 + AT_rich Low_complexity Low_complexity 1 31 0 2454 202 86 77 chr12 26426630 26427349 -117855140 + LTR8A LTR ERV1 2 727 0 2028 134 3 0 chr12 26427404 26427694 -117854795 - AluSx SINE Alu -21 291 1 1961 149 9 25 chr12 26428383 26428699 -117853790 - AluSx SINE Alu 0 312 2 336 24 0 0 chr12 26430281 26430322 -117852167 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 2116 129 0 13 chr12 26430357 26430667 -117851822 + AluSx SINE Alu 1 306 -6 1959 138 30 0 chr12 26431012 26431309 -117851180 + AluSx SINE Alu 1 306 -6 1058 152 5 71 chr12 26431899 26431972 -117850517 + MER5A DNA MER1_type 2 78 -111 897 157 0 30 chr12 26431972 26432106 -117850383 + FLAM_C SINE Alu 2 131 -2 1058 152 5 71 chr12 26432106 26432230 -117850259 + MER5A DNA MER1_type 78 186 -3 1847 155 0 17 chr12 26432431 26432728 -117849761 - AluSx SINE Alu -20 292 1 1472 209 3 14 chr12 26432728 26433024 -117849465 + AluJo SINE Alu 17 309 -3 604 211 60 15 chr12 26434431 26434564 -117847925 - AluJo SINE Alu -56 256 118 1583 196 0 46 chr12 26434646 26434972 -117847517 - AluSx SINE Alu 0 312 2 306 226 32 43 chr12 26435989 26436082 -117846407 - MER58B DNA MER1_type -8 333 116 965 114 0 15 chr12 26436083 26436215 -117846274 - AluJo SINE Alu -172 130 1 642 183 98 20 chr12 26436215 26436368 -117846121 - MER58B DNA MER1_type -176 165 1 826 174 0 43 chr12 26436434 26436447 -117846042 - AluJo SINE Alu -170 132 120 423 0 0 0 chr12 26436447 26436494 -117845995 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 826 174 0 43 chr12 26436494 26436618 -117845871 - AluJo SINE Alu -182 120 1 809 264 75 45 chr12 26438228 26438653 -117843836 - MLT1J1 LTR MaLR -1 445 8 2374 133 128 10 chr12 26438712 26439095 -117843394 + MSTA LTR MaLR 1 428 0 1436 182 97 0 chr12 26439476 26439734 -117842755 - AluJb SINE Alu -19 283 1 2560 72 0 0 chr12 26439744 26440049 -117842440 - AluSc SINE Alu -4 305 1 440 271 40 53 chr12 26441542 26441693 -117840796 + MIR3 SINE MIR 55 203 -5 230 280 11 32 chr12 26442493 26442586 -117839903 - MIR SINE MIR -72 190 100 1053 227 14 5 chr12 26444531 26444738 -117837751 + MIR SINE MIR 27 235 -27 209 241 152 0 chr12 26444837 26444916 -117837573 - MIR SINE MIR -30 232 142 209 182 18 0 chr12 26444966 26445021 -117837468 + CT-rich Low_complexity Low_complexity 3 58 0 2287 92 0 0 chr12 26445021 26445314 -117837175 - AluY SINE Alu -18 293 1 867 181 18 23 chr12 26445314 26445485 -117837004 + MSTB LTR MaLR 203 372 -54 298 292 45 0 chr12 26445505 26445594 -117836895 - MIR SINE MIR -133 129 37 204 40 0 0 chr12 26445991 26446016 -117836473 + (A)n Simple_repeat Simple_repeat 1 25 0 907 166 0 0 chr12 26446401 26446540 -117835949 + AluJo SINE Alu 1 139 -173 42 0 0 0 chr12 26446557 26446599 -117835890 + AT_rich Low_complexity Low_complexity 1 42 0 467 189 112 14 chr12 26447354 26447497 -117834992 + LTR16A1 LTR ERVL 119 275 -182 416 143 0 2 chr12 26447497 26447570 -117834919 - MSTB1 LTR MaLR 0 432 325 2538 138 19 33 chr12 26447589 26448015 -117834474 - MSTB1 LTR MaLR -12 420 1 592 266 43 53 chr12 26448016 26448204 -117834285 + LTR16A1 LTR ERVL 272 457 0 21 0 0 0 chr12 26448721 26448742 -117833747 + AT_rich Low_complexity Low_complexity 1 21 0 272 158 0 0 chr12 26449669 26449707 -117832782 + Alu SINE Alu 1 38 -261 4019 196 10 26 chr12 26449707 26449804 -117832685 - MER57A-int LTR ERV1 -915 6622 6525 2231 125 3 0 chr12 26449804 26450109 -117832380 - AluSx SINE Alu -6 306 1 4019 196 10 26 chr12 26450109 26450822 -117831667 - MER57A-int LTR ERV1 -1012 6525 5825 6199 163 76 77 chr12 26451125 26451967 -117830522 - MER57A-int LTR ERV1 -1587 4744 3903 189 0 0 0 chr12 26451967 26451988 -117830501 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1625 164 0 45 chr12 26451988 26452280 -117830209 - AluJb SINE Alu -33 279 1 6199 163 76 77 chr12 26452280 26453129 -117829360 - MER57A-int LTR ERV1 -2427 3904 3589 2206 106 0 3 chr12 26453129 26453422 -117829067 - AluSx SINE Alu -20 292 1 6199 163 76 77 chr12 26453422 26453547 -117828942 - MER57A-int LTR ERV1 -2742 3589 3465 587 239 123 26 chr12 26453521 26453571 -117828918 - MER57A-int LTR ERV1 -2888 2048 2004 * 1876 149 14 3 chr12 26453571 26453860 -117828629 - AluJb SINE Alu -20 292 1 587 239 123 26 chr12 26453860 26454119 -117828370 - MER57A-int LTR ERV1 -2932 2004 1709 982 178 18 200 chr12 26454232 26454435 -117828054 - MER57A-int LTR ERV1 -2878 3453 3215 1960 137 22 0 chr12 26454435 26454747 -117827742 + AluSq SINE Alu 1 318 0 982 178 18 200 chr12 26454747 26454822 -117827667 - MER57A-int LTR ERV1 -3116 3215 3128 1212 178 50 157 chr12 26454822 26454950 -117827539 + AluJo SINE Alu 1 141 -161 243 0 0 0 chr12 26454950 26454977 -117827512 + (TA)n Simple_repeat Simple_repeat 2 28 0 1212 178 50 157 chr12 26454977 26455186 -117827303 + AluJo SINE Alu 141 302 0 982 178 18 200 chr12 26455186 26455306 -117827183 - MER57A-int LTR ERV1 -3203 3128 3142 2377 197 86 99 chr12 26455306 26456043 -117826446 - LTR8A LTR ERV1 0 727 1 982 178 18 200 chr12 26456043 26456097 -117826392 - MER57A-int LTR ERV1 -3188 3143 3081 354 215 0 56 chr12 26456108 26456215 -117826274 - MER57A-int LTR ERV1 -3724 1399 1299 277 183 61 37 chr12 26456190 26456272 -117826217 - MER57A-int LTR ERV1 -3678 1193 1110 * 2950 9 0 0 chr12 26456276 26456592 -117825897 - AluYb8 SINE Alu -2 316 1 722 220 136 44 chr12 26456647 26456897 -117825592 - MER34C LTR ERV1 -158 427 155 497 277 0 21 chr12 26456897 26457038 -117825451 - MER57A-int LTR ERV1 -4135 988 851 2239 123 0 19 chr12 26457045 26457361 -117825128 - AluSg SINE Alu 0 310 1 1624 161 69 11 chr12 26457441 26457715 -117824774 - AluJo SINE Alu -14 298 9 3761 195 11 71 chr12 26457751 26458129 -117824360 - MER57A-int LTR ERV1 -6688 849 450 2185 96 3 0 chr12 26458129 26458441 -117824048 - AluSq SINE Alu 0 313 1 3761 195 11 71 chr12 26458441 26458964 -117823525 - MER57A-int LTR ERV1 -7087 450 1 2308 170 21 0 chr12 26458964 26459352 -117823137 - MER57A LTR ERV1 0 403 8 1794 187 142 3 chr12 26459758 26460132 -117822357 - MSTB LTR MaLR 0 426 1 926 163 112 86 chr12 26460521 26460754 -117821735 + MLT1D LTR MaLR 204 442 -63 2503 65 7 0 chr12 26461503 26461809 -117820680 - AluSp SINE Alu -5 308 1 244 258 263 5 chr12 26461816 26462002 -117820487 - L2 LINE L2 -1305 2009 1776 352 273 182 57 chr12 26463193 26463612 -117818877 + L1M2 LINE L1 773 1401 -5448 44 106 0 0 chr12 26463640 26463810 -117818679 + GC_rich Low_complexity Low_complexity 1 170 0 382 254 143 11 chr12 26466220 26466409 -117816080 + MIR SINE MIR 37 250 -12 257 280 192 63 chr12 26466413 26467244 -117815245 + L2 LINE L2 2328 3313 0 881 161 8 0 chr12 26467268 26467398 -117815091 - FLAM_A SINE Alu -2 131 1 22 0 0 0 chr12 26467649 26467671 -117814818 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr12 26469600 26469625 -117812864 + AT_rich Low_complexity Low_complexity 1 25 0 2324 80 3 0 chr12 26469625 26469911 -117812578 - AluY SINE Alu -24 287 1 2660 221 54 25 chr12 26469920 26470030 -117812459 - L1ME1 LINE L1 -5 6161 6056 1903 134 34 0 chr12 26470030 26470322 -117812167 - AluSx SINE Alu -6 306 5 2660 221 54 25 chr12 26470322 26470893 -117811596 - L1ME1 LINE L1 -110 6056 5460 418 164 0 27 chr12 26470921 26470994 -117811495 - AluJo SINE Alu -12 300 230 971 170 16 33 chr12 26470995 26471177 -117811312 - AluJo SINE Alu -133 179 1 2507 171 61 2 chr12 26471178 26471738 -117810751 - L1ME1 LINE L1 -729 5437 4849 407 299 159 19 chr12 26472715 26472986 -117809503 + L2 LINE L2 1713 2021 -1293 2276 88 0 10 chr12 26472990 26473314 -117809175 - AluSx SINE Alu 0 312 1 947 285 91 18 chr12 26473371 26473885 -117808604 - L2 LINE L2 -62 3251 2713 722 233 119 10 chr12 26473899 26474101 -117808388 + MIR SINE MIR 12 235 -27 505 227 108 49 chr12 26474135 26474338 -117808151 - L2 LINE L2 -610 2704 2490 259 217 132 70 chr12 26474400 26474529 -117807960 + MER20B DNA MER1_type 1 137 -646 212 319 217 13 chr12 26475145 26475302 -117807187 + L2 LINE L2 2554 2742 -572 200 94 0 31 chr12 26476241 26476273 -117806216 + (GAAAA)n Simple_repeat Simple_repeat 1 31 0 25 65 0 0 chr12 26477018 26477064 -117805425 + AT_rich Low_complexity Low_complexity 1 46 0 446 267 67 29 chr12 26477111 26477321 -117805168 + L1ME4a LINE L1 5698 5915 -206 595 202 81 50 chr12 26477527 26477717 -117804772 - L1ME3A LINE L1 -166 5998 5806 824 139 0 0 chr12 26477718 26477840 -117804649 - FRAM SINE Alu -18 158 37 329 305 6 85 chr12 26478022 26478186 -117804303 + MIR SINE MIR 25 187 -74 2046 174 25 8 chr12 26478254 26478611 -117803878 + MLT1A1 LTR MaLR 1 363 -2 331 331 92 48 chr12 26479713 26479985 -117802504 - L2 LINE L2 -157 3115 2832 2627 137 42 148 chr12 26480765 26481474 -117801015 + MER51A LTR ERV1 1 634 0 181 274 36 95 chr12 26483596 26483680 -117798809 + L3 LINE CR1 994 1072 -505 193 272 86 95 chr12 26483889 26484121 -117798368 - L2 LINE L2 -1207 2107 1878 742 230 119 25 chr12 26484181 26484416 -117798073 - MIR SINE MIR -4 258 2 2258 153 42 39 chr12 26485812 26486270 -117796219 - LTR32 LTR ERVL 0 471 13 612 305 96 11 chr12 26486796 26487078 -117795411 + L3 LINE CR1 637 942 -635 473 299 132 58 chr12 26487100 26488050 -117794439 + L1MEd LINE L1 4 1023 -5096 315 271 62 54 chr12 26488052 26488292 -117794197 + MER112 DNA MER1_type 17 258 -2 1468 178 3 60 chr12 26488738 26489036 -117793453 - AluJo SINE Alu -12 300 20 1955 139 0 4 chr12 26489036 26489317 -117793172 - AluSc SINE Alu -29 280 1 509 266 28 0 chr12 26489575 26489684 -117792805 + L3 LINE CR1 1044 1155 -422 199 328 172 0 chr12 26490259 26490387 -117792102 - MIR SINE MIR -6 256 107 618 258 72 19 chr12 26490488 26490697 -117791792 + MIR SINE MIR 14 233 -29 325 256 122 0 chr12 26490996 26491078 -117791411 - MIR SINE MIR -63 145 54 2261 80 14 0 chr12 26491595 26491914 -117790575 - AluSp SINE Alu 0 323 1 2281 103 0 34 chr12 26492521 26492841 -117789648 - AluSg SINE Alu -1 309 1 347 292 64 17 chr12 26494566 26494700 -117787789 + MIR SINE MIR 38 175 -62 24 0 0 0 chr12 26495131 26495155 -117787334 + AT_rich Low_complexity Low_complexity 1 24 0 1621 224 131 17 chr12 26496110 26496530 -117785959 - MLT1F LTR MaLR -72 470 3 242 258 175 31 chr12 26496852 26496949 -117785540 - L2 LINE L2 0 3313 3203 502 272 83 12 chr12 26496964 26497133 -117785356 + MIR SINE MIR 11 191 -71 21 0 0 0 chr12 26498950 26498971 -117783518 + AT_rich Low_complexity Low_complexity 1 21 0 213 94 0 0 chr12 26501964 26501996 -117780493 + (TG)n Simple_repeat Simple_repeat 2 33 0 2184 98 10 0 chr12 26502857 26503153 -117779336 - AluSq SINE Alu -13 300 2 228 281 195 8 chr12 26503498 26503626 -117778863 - L2 LINE L2 -19 3294 3143 916 165 136 23 chr12 26503973 26504149 -117778340 + AluJb SINE Alu 1 196 -116 24 0 0 0 chr12 26504895 26504919 -117777570 + AT_rich Low_complexity Low_complexity 1 24 0 21 82 0 0 chr12 26504976 26505025 -117777464 + AT_rich Low_complexity Low_complexity 1 49 0 2433 141 34 5 chr12 26505038 26505485 -117777004 - Tigger3b DNA MER2_type 0 1231 772 1186 139 27 5 chr12 26505485 26505672 -117776817 - AluJb SINE Alu -2 310 120 721 189 0 61 chr12 26505674 26505822 -117776667 - AluJo SINE Alu -153 159 21 26 30 0 0 chr12 26505823 26505856 -117776633 + AT_rich Low_complexity Low_complexity 1 33 0 4038 126 58 15 chr12 26505880 26506617 -117775872 - Tigger3b DNA MER2_type -462 769 1 2253 123 3 0 chr12 26506658 26506967 -117775522 + AluSq SINE Alu 1 310 -3 1786 104 4 8 chr12 26507001 26507241 -117775248 + AluSg SINE Alu 1 239 -71 1012 151 5 0 chr12 26507249 26507434 -117775055 - L1 LINE L1 -1970 4176 3991 506 188 51 0 chr12 26507509 26507626 -117774863 - L1 LINE L1 -1146 5000 4878 * 1594 151 0 0 chr12 26507625 26507910 -117774579 - L1 LINE L1 -2158 3988 3704 27 29 0 0 chr12 26508265 26508299 -117774190 + AT_rich Low_complexity Low_complexity 1 34 0 2070 151 0 0 chr12 26508402 26508701 -117773788 + AluJb SINE Alu 1 299 -13 1955 121 57 6 chr12 26508910 26509242 -117773247 - Tigger2 DNA MER2_type 0 2718 2370 693 203 0 0 chr12 26509389 26509512 -117772977 + FLAM_C SINE Alu 11 133 -10 216 0 0 0 chr12 26509672 26509696 -117772793 + (TG)n Simple_repeat Simple_repeat 2 25 0 244 239 80 106 chr12 26510775 26510963 -117771526 + MIR SINE MIR 32 214 -48 505 223 18 0 chr12 26511105 26511217 -117771272 + MER94 DNA DNA 21 134 0 2007 115 42 76 chr12 26511377 26511787 -117770702 - MSTB1 LTR MaLR -3 429 34 217 323 141 21 chr12 26512014 26512206 -117770283 - L2 LINE L2 -181 3091 2877 2212 91 7 0 chr12 26512502 26512789 -117769700 + AluY SINE Alu 4 292 -19 218 207 0 103 chr12 26513468 26513526 -117768963 - MIR SINE MIR -138 70 19 635 230 18 18 chr12 26513840 26514005 -117768484 + MER20B DNA MER1_type 2 166 -617 1385 239 239 4 chr12 26514023 26514559 -117767930 - L2 LINE L2 -1099 2215 1554 1716 156 37 71 chr12 26516027 26516405 -117766084 + MLT1A1 LTR MaLR 1 365 0 191 255 21 0 chr12 26516494 26516541 -117765948 + L2 LINE L2 3216 3263 -9 893 267 50 8 chr12 26516584 26516824 -117765665 + MIR SINE MIR 2 251 -11 1953 147 20 3 chr12 26517182 26517482 -117765007 - AluJo SINE Alu -7 305 1 21 0 0 0 chr12 26518138 26518159 -117764330 + AT_rich Low_complexity Low_complexity 1 21 0 279 354 76 0 chr12 26518744 26518888 -117763601 - MER117 DNA MER1_type -42 155 1 1991 138 7 10 chr12 26519430 26519728 -117762761 + AluJb SINE Alu 1 297 -15 219 173 19 0 chr12 26520703 26520755 -117761734 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 24 0 0 0 chr12 26521624 26521648 -117760841 + AT_rich Low_complexity Low_complexity 1 24 0 894 215 112 71 chr12 26521778 26522422 -117760067 - LTR41 LTR ERVL -12 761 19 30 59 0 0 chr12 26522843 26522894 -117759595 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr12 26523914 26523936 -117758553 + AT_rich Low_complexity Low_complexity 1 22 0 465 34 0 0 chr12 26524070 26524129 -117758360 + (TG)n Simple_repeat Simple_repeat 2 60 0 26 30 0 0 chr12 26524215 26524248 -117758241 + AT_rich Low_complexity Low_complexity 1 33 0 790 262 154 14 chr12 26524594 26524945 -117757544 + MLT1D LTR MaLR 106 505 0 22 56 0 0 chr12 26525153 26525189 -117757300 + AT_rich Low_complexity Low_complexity 1 36 0 477 319 69 5 chr12 26525277 26525481 -117757008 + MIR SINE MIR 20 236 -26 873 222 42 0 chr12 26525605 26525817 -117756672 + L1MB8 LINE L1 3 223 -6636 639 186 0 0 chr12 26525817 26525930 -117756559 + MSTC LTR MaLR 1 113 -315 4980 205 102 34 chr12 26525930 26527241 -117755248 + L1MB8 LINE L1 309 1943 -5195 2240 80 10 29 chr12 26527241 26527552 -117754937 - AluSp SINE Alu -8 305 1 4980 205 102 34 chr12 26527552 26528170 -117754319 + L1MB8 LINE L1 1943 2517 -4621 808 150 0 43 chr12 26528665 26528805 -117753684 - FLAM_C SINE Alu -9 134 1 3589 220 58 20 chr12 26528835 26529179 -117753310 + L1MB8 LINE L1 4307 4636 -2321 2278 82 0 10 chr12 26529179 26529473 -117753016 + AluY SINE Alu 1 291 -20 3589 220 58 20 chr12 26529473 26529780 -117752709 + L1MB8 LINE L1 4636 4930 -2027 2431 56 0 20 chr12 26529780 26530085 -117752404 + AluY SINE Alu 1 299 -12 3589 220 58 20 chr12 26530085 26530428 -117752061 + L1MB8 LINE L1 4930 5340 -1617 3335 205 101 18 chr12 26530423 26530941 -117751548 + L1MB8 LINE L1 5729 6203 -786 * 2182 109 0 0 chr12 26530941 26531224 -117751265 - AluSx SINE Alu -13 299 17 3335 205 101 18 chr12 26531224 26531868 -117750621 + L1MB8 LINE L1 6203 6983 -6 234 171 0 0 chr12 26532207 26532242 -117750247 - L2 LINE L2 -15 3298 3264 24 53 0 0 chr12 26534519 26534557 -117747932 + AT_rich Low_complexity Low_complexity 1 38 0 837 215 47 6 chr12 26535314 26535486 -117747003 - MER58A DNA MER1_type -27 197 19 239 224 0 0 chr12 26538199 26538248 -117744241 + Charlie8 DNA MER1_type 439 487 -1930 392 319 48 18 chr12 26538285 26538451 -117744038 + MIR SINE MIR 11 181 -81 1353 96 101 0 chr12 26538819 26539028 -117743461 + MER30 DNA MER1_type 1 230 0 219 152 24 42 chr12 26539875 26540040 -117742449 + (TTATA)n Simple_repeat Simple_repeat 5 166 0 296 165 44 11 chr12 26540048 26540139 -117742350 + (TA)n Simple_repeat Simple_repeat 1 94 0 247 223 58 8 chr12 26540254 26540375 -117742114 + (TATAA)n Simple_repeat Simple_repeat 5 131 0 261 97 35 44 chr12 26540375 26540488 -117742001 + (TA)n Simple_repeat Simple_repeat 1 112 0 24 85 0 0 chr12 26540922 26540981 -117741508 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr12 26541067 26541088 -117741401 + AT_rich Low_complexity Low_complexity 1 21 0 2013 108 25 51 chr12 26541132 26541447 -117741042 + AluSx SINE Alu 1 307 -5 404 226 52 26 chr12 26541697 26541812 -117740677 + MER97c DNA MER1_type? 59 176 -914 432 0 0 0 chr12 26543115 26543163 -117739326 + (CA)n Simple_repeat Simple_repeat 2 49 0 2295 80 0 17 chr12 26545398 26545698 -117736791 - AluY SINE Alu -16 295 1 359 268 150 80 chr12 26546291 26546691 -117735798 + L1M2 LINE L1 684 1111 -5738 310 258 67 0 chr12 26546765 26546854 -117735635 - L1MC4 LINE L1 -1339 6703 6609 28 29 0 0 chr12 26547857 26547892 -117734597 + AT_rich Low_complexity Low_complexity 1 35 0 208 317 73 0 chr12 26548198 26548280 -117734209 - L2 LINE L2 -6 3266 3179 338 312 19 80 chr12 26548437 26548748 -117733741 - L2 LINE L2 -410 2904 2613 1434 202 143 12 chr12 26548768 26549189 -117733300 + L1ME3A LINE L1 5687 6162 -8 21 89 0 0 chr12 26550940 26550996 -117731493 + AT_rich Low_complexity Low_complexity 1 56 0 218 232 36 0 chr12 26551212 26551268 -117731221 - L2 LINE L2 -901 2413 2356 350 272 106 7 chr12 26551499 26551635 -117730854 + MIR SINE MIR 49 196 -66 762 144 8 16 chr12 26551705 26551830 -117730659 + FLAM_C SINE Alu 3 126 -7 1216 230 134 20 chr12 26552931 26553335 -117729154 + MER54B LTR ERVL 341 790 -3 2174 100 0 14 chr12 26553866 26554206 -117728283 - AluSq SINE Alu 0 336 1 2367 77 3 3 chr12 26554932 26555231 -117727258 - AluY SINE Alu -12 299 1 189 281 62 31 chr12 26555645 26555709 -117726780 - MIR SINE MIR -163 99 34 418 253 117 26 chr12 26556247 26556401 -117726088 + MIR SINE MIR 74 241 -21 496 178 9 19 chr12 26556551 26556658 -117725831 + MER82 DNA MER2_type 99 204 -449 2010 216 39 14 chr12 26556951 26557391 -117725098 + MER82 DNA MER2_type 203 653 0 1022 122 0 6 chr12 26557844 26558000 -117724489 - L1P LINE L1 -1882 4264 4110 1165 189 41 19 chr12 26558105 26558375 -117724114 + L1MA10 LINE L1 5926 6201 -133 453 239 26 8 chr12 26558668 26558785 -117723704 - MER103 DNA DNA -45 121 3 183 42 0 0 chr12 26559879 26559903 -117722586 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2107 113 10 0 chr12 26561051 26561351 -117721138 + AluSx SINE Alu 1 303 -9 262 292 0 0 chr12 26561550 26561615 -117720874 - L2 LINE L2 -2 3270 3206 234 0 0 0 chr12 26562248 26562274 -117720215 + (TG)n Simple_repeat Simple_repeat 1 26 0 7190 46 8 0 chr12 26562282 26563540 -117718949 - L1PA5 LINE L1 -3 6151 4886 743 131 29 52 chr12 26563641 26563806 -117718683 + THE1C LTR MaLR 201 350 -25 1568 115 3 90 chr12 26563830 26564160 -117718329 - MER4A LTR ERV1 -42 622 263 2304 96 0 3 chr12 26564186 26564488 -117718001 + AluSx SINE Alu 10 310 -2 342 261 0 43 chr12 26564648 26564836 -117717653 + T-rich Low_complexity Low_complexity 1 180 0 377 227 113 18 chr12 26565911 26566065 -117716424 + AluSq/x SINE Alu 2 105 -198 189 213 0 0 chr12 26567985 26568032 -117714457 + (CA)n Simple_repeat Simple_repeat 2 48 0 266 223 125 9 chr12 26568893 26569005 -117713484 - L1ME4a LINE L1 -12 6109 5985 23 68 0 0 chr12 26569121 26569165 -117713324 + AT_rich Low_complexity Low_complexity 1 44 0 306 211 0 0 chr12 26569232 26569284 -117713205 - MLT1I LTR MaLR 0 409 358 2403 66 0 0 chr12 26569379 26569667 -117712822 - AluY SINE Alu -23 288 1 285 310 26 9 chr12 26570462 26570578 -117711911 + L2 LINE L2 3192 3309 -4 23 33 0 0 chr12 26570914 26570944 -117711545 + AT_rich Low_complexity Low_complexity 1 30 0 180 111 0 0 chr12 26571022 26571049 -117711440 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 197 286 78 26 chr12 26571563 26571640 -117710849 - MIR3 SINE MIR -19 189 109 456 286 103 49 chr12 26571872 26572096 -117710393 - MIR SINE MIR -5 257 22 23 0 0 0 chr12 26572163 26572186 -117710303 + AT_rich Low_complexity Low_complexity 1 23 0 180 184 0 0 chr12 26572274 26572312 -117710177 - L2 LINE L2 -25 3247 3210 1860 163 7 13 chr12 26572862 26573169 -117709320 - AluJb SINE Alu -7 305 1 197 317 0 49 chr12 26575092 26575174 -117707315 - MIR3 SINE MIR -24 184 107 567 153 119 119 chr12 26575533 26575710 -117706779 - MER3 DNA MER1_type -79 130 1 183 186 136 17 chr12 26575726 26575785 -117706704 + MER5A DNA MER1_type 10 75 -114 22 0 0 0 chr12 26577008 26577030 -117705459 + AT_rich Low_complexity Low_complexity 1 22 0 1721 170 13 26 chr12 26577234 26577540 -117704949 - AluJb SINE Alu -10 302 1 22 35 0 0 chr12 26577621 26577650 -117704839 + AT_rich Low_complexity Low_complexity 1 29 0 2029 109 0 7 chr12 26582924 26583209 -117699280 + AluSq SINE Alu 1 283 -30 554 147 0 10 chr12 26583218 26583320 -117699169 + (CA)n Simple_repeat Simple_repeat 2 102 0 212 304 131 84 chr12 26583733 26583822 -117698667 - L2 LINE L2 -1 3271 3188 1980 121 0 7 chr12 26583822 26584112 -117698377 - AluSg SINE Alu -22 288 1 212 304 131 84 chr12 26584112 26584259 -117698230 - L2 LINE L2 -84 3188 3024 581 297 82 30 chr12 26584260 26584563 -117697926 - L2 LINE L2 -417 2897 2579 181 301 0 86 chr12 26584581 26584674 -117697815 - L2 LINE L2 -12 3260 3176 467 294 242 4 chr12 26585394 26585646 -117696843 - L3 LINE CR1 -78 1499 1188 7338 37 6 1 chr12 26585730 26587154 -117695335 - L1PA6 LINE L1 0 6154 4732 247 320 147 0 chr12 26587223 26587373 -117695116 - L3 LINE CR1 -602 975 804 700 301 124 13 chr12 26587567 26587873 -117694616 - L2 LINE L2 -17 3296 2957 4580 153 50 41 chr12 26588543 26588772 -117693717 + L1MA9 LINE L1 5096 5321 -991 2118 116 0 23 chr12 26588772 26589074 -117693415 + AluY SINE Alu 1 295 -16 4580 153 50 41 chr12 26589074 26589912 -117692577 + L1MA9 LINE L1 5321 6171 -141 342 0 0 0 chr12 26589912 26589950 -117692539 + (CA)n Simple_repeat Simple_repeat 1 38 0 4580 153 50 41 chr12 26589950 26590063 -117692426 + L1MA9 LINE L1 6171 6282 -30 1616 174 64 25 chr12 26590427 26590788 -117691701 - THE1C LTR MaLR 0 375 1 9707 123 19 35 chr12 26590788 26592392 -117690097 - THE1C-int LTR MaLR 0 1580 4 6981 48 6 25 chr12 26592434 26593722 -117688767 + L1PA5 LINE L1 4912 6182 0 456 130 11 33 chr12 26593798 26593890 -117688599 + MER4A LTR ERV1 1 90 -574 2052 173 0 3 chr12 26593891 26594197 -117688292 - AluSx SINE Alu -3 309 5 1619 108 168 82 chr12 26594213 26594565 -117687924 + MER4A LTR ERV1 257 638 -26 1500 143 66 66 chr12 26594573 26594923 -117687566 - THE1C LTR MaLR -25 350 1 2429 84 0 0 chr12 26594935 26595234 -117687255 + AluSg SINE Alu 1 299 -11 1834 156 0 7 chr12 26595234 26595516 -117686973 - AluJo SINE Alu -31 281 1 234 185 46 0 chr12 26595544 26595609 -117686880 + (TA)n Simple_repeat Simple_repeat 1 68 0 408 165 13 3 chr12 26595610 26595695 -117686794 + MLT2B2 LTR ERVL 1 84 -313 2192 118 0 13 chr12 26595696 26596002 -117686487 - AluSg SINE Alu -8 302 1 279 392 0 0 chr12 26596549 26596646 -117685843 + MIR SINE MIR 53 149 -59 197 405 42 0 chr12 26596767 26596935 -117685554 - L2 LINE L2 -946 2368 2194 25 65 0 0 chr12 26596970 26597016 -117685473 + AT_rich Low_complexity Low_complexity 1 46 0 1226 114 0 0 chr12 26597026 26597184 -117685305 - AluSp SINE Alu -26 287 130 2268 113 0 0 chr12 26597188 26597490 -117684999 - AluSc SINE Alu -7 302 1 325 324 214 0 chr12 26597563 26597708 -117684781 + MER5A DNA MER1_type 14 189 0 1589 156 132 12 chr12 26597852 26598178 -117684311 - MLT1A1 LTR MaLR 0 365 1 225 255 0 0 chr12 26598715 26598762 -117683727 + (TG)n Simple_repeat Simple_repeat 1 47 0 37 23 0 0 chr12 26598943 26598987 -117683502 + AT_rich Low_complexity Low_complexity 1 44 0 469 315 50 22 chr12 26599174 26599355 -117683134 + MIR3 SINE MIR 21 206 -2 1986 103 75 0 chr12 26599757 26600038 -117682451 + AluSc SINE Alu 1 302 -7 477 259 0 0 chr12 26600169 26600281 -117682208 + L2 LINE L2 3197 3308 -5 289 280 13 0 chr12 26602119 26602194 -117680295 + MIR3 SINE MIR 132 207 -1 225 0 0 0 chr12 26602297 26602322 -117680167 + (T)n Simple_repeat Simple_repeat 1 25 0 301 260 110 50 chr12 26602624 26602724 -117679765 - L2 LINE L2 0 3272 3167 2066 124 3 13 chr12 26602768 26603083 -117679406 + AluSx SINE Alu 1 312 0 569 235 46 0 chr12 26603618 26603791 -117678698 + L1MCa LINE L1 1731 2025 -4532 1488 208 139 41 chr12 26603949 26603986 -117678503 - MLT2B1 LTR ERVL -2 518 486 526 71 24 0 chr12 26603986 26604070 -117678419 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 1488 208 139 41 chr12 26604070 26604499 -117677990 - MLT2B1 LTR ERVL -34 486 6 414 0 0 0 chr12 26604722 26604768 -117677721 + (TTA)n Simple_repeat Simple_repeat 2 47 0 3929 184 82 52 chr12 26605437 26606446 -117676043 + MER45B DNA AcHobo 2 1040 0 246 300 12 0 chr12 26607584 26607664 -117674825 + MER20B DNA MER1_type 3 83 -700 5161 129 50 18 chr12 26607705 26608664 -117673825 + L1MA7 LINE L1 5296 6285 -6 248 289 0 40 chr12 26608694 26608770 -117673719 + MER20B DNA MER1_type 115 187 -596 843 198 45 0 chr12 26608823 26608980 -117673509 - AluJb SINE Alu -4 308 145 602 298 18 0 chr12 26608992 26609210 -117673279 + MER20B DNA MER1_type 295 516 -267 592 170 104 130 chr12 26609303 26609370 -117673119 + MER20B DNA MER1_type 518 585 -198 208 70 47 0 chr12 26609370 26609413 -117673076 + (TA)n Simple_repeat Simple_repeat 2 46 0 592 170 104 130 chr12 26609413 26609615 -117672874 + MER20B DNA MER1_type 585 780 -3 312 342 187 0 chr12 26610391 26610546 -117671943 + MIR SINE MIR 78 261 -1 342 289 84 30 chr12 26611240 26611406 -117671083 - MIR SINE MIR -65 197 23 446 243 64 17 chr12 26611490 26611631 -117670858 - MIR SINE MIR -26 182 33 1533 199 30 33 chr12 26612012 26612378 -117670111 + MLT1A1 LTR MaLR 1 365 0 211 269 129 54 chr12 26613080 26613173 -117669316 - L2 LINE L2 -4 3268 3169 712 267 48 0 chr12 26614082 26614288 -117668201 + L2 LINE L2 2832 3047 -266 524 188 4 195 chr12 26614372 26614628 -117667861 - MLT1D LTR MaLR -45 460 254 2405 87 0 0 chr12 26614926 26615224 -117667265 - AluSx SINE Alu -14 298 1 796 156 6 78 chr12 26615229 26615409 -117667080 - L1MD3 LINE L1 -419 7576 7410 295 185 0 0 chr12 26615411 26615465 -117667024 - MLT1D LTR MaLR -442 125 72 825 175 18 102 chr12 26615483 26615815 -117666674 - L1MC4 LINE L1 -7 8035 7732 479 308 37 71 chr12 26615818 26616172 -117666317 + L1MEc LINE L1 37 378 -6018 319 283 0 0 chr12 26616183 26616275 -117666214 - L1MC4a LINE L1 -1214 6594 6503 423 257 77 6 chr12 26616526 26616709 -117665780 - HAL1b LINE L1 -585 763 568 555 289 6 31 chr12 26616711 26616870 -117665619 + MER5B DNA MER1_type 4 158 -20 605 180 18 9 chr12 26617135 26617246 -117665243 - MER5A DNA MER1_type -77 112 1 339 287 0 23 chr12 26618799 26618886 -117663603 - L2 LINE L2 -4 3309 3225 804 274 29 29 chr12 26619554 26619831 -117662658 + MER102a DNA MER1_type 32 308 -22 311 232 0 0 chr12 26620355 26620424 -117662065 - L2 LINE L2 -217 3055 2987 2126 100 3 32 chr12 26620663 26620974 -117661515 + AluSg SINE Alu 1 302 -8 222 296 121 8 chr12 26620984 26621116 -117661373 - L2 LINE L2 -625 2689 2543 * 393 267 112 17 chr12 26621115 26621231 -117661258 - L2 LINE L2 -9 3263 3137 183 100 100 0 chr12 26621721 26621751 -117660738 + L2 LINE L2 3219 3251 -21 725 275 74 85 chr12 26621850 26622368 -117660121 - L2 LINE L2 -1 3312 2841 335 225 153 27 chr12 26622518 26622629 -117659860 + L2 LINE L2 3186 3310 -3 24 100 0 0 chr12 26623823 26623903 -117658586 + GC_rich Low_complexity Low_complexity 1 80 0 287 158 287 40 chr12 26625251 26625352 -117657137 + MIR SINE MIR 5 130 -132 465 234 29 44 chr12 26625740 26625945 -117656544 - L1M4 LINE L1 -1754 4392 4191 28 79 0 0 chr12 26628204 26628267 -117654222 + AT_rich Low_complexity Low_complexity 1 63 0 198 269 0 75 chr12 26628512 26628579 -117653910 + L3 LINE CR1 1515 1576 -1 344 261 52 52 chr12 26628901 26629054 -117653435 + MIR3 SINE MIR 31 183 -25 25 0 0 0 chr12 26629901 26629926 -117652563 + AT_rich Low_complexity Low_complexity 1 25 0 200 279 0 0 chr12 26630636 26630704 -117651785 + (TA)n Simple_repeat Simple_repeat 2 69 0 282 73 0 0 chr12 26631754 26631795 -117650694 + (CGG)n Simple_repeat Simple_repeat 3 43 0 22 0 0 0 chr12 26631948 26631970 -117650519 + GC_rich Low_complexity Low_complexity 1 22 0 259 71 18 54 chr12 26632077 26632133 -117650356 + (CCG)n Simple_repeat Simple_repeat 3 56 0 201 74 0 0 chr12 26634430 26634457 -117648032 + (CA)n Simple_repeat Simple_repeat 1 27 0 232 273 23 0 chr12 26634583 26634671 -117647818 + (CGGGG)n Simple_repeat Simple_repeat 1 90 0 22 0 0 0 chr12 26635989 26636011 -117646478 + GC_rich Low_complexity Low_complexity 1 22 0 208 358 13 7 chr12 26636995 26637146 -117645343 + T-rich Low_complexity Low_complexity 1 152 0 700 259 85 25 chr12 26637365 26637601 -117644888 - MIR SINE MIR 0 262 13 402 302 118 35 chr12 26637945 26638200 -117644289 + L3b LINE CR1 1281 1556 -27 389 255 68 57 chr12 26640126 26640318 -117642171 - MLT1J LTR MaLR -42 469 276 390 259 89 15 chr12 26641252 26641387 -117641102 - MIR SINE MIR -88 174 30 274 290 168 0 chr12 26641725 26641832 -117640657 - L2 LINE L2 -2 3311 3187 260 316 86 0 chr12 26642753 26642927 -117639562 + L2 LINE L2 2458 2646 -668 361 250 0 0 chr12 26642928 26643004 -117639485 - LTR33A LTR ERVL -2 521 446 252 306 9 28 chr12 26643214 26643322 -117639167 - MLT2E LTR ERVL -491 137 32 784 325 46 68 chr12 26643391 26644020 -117638469 + L2 LINE L2 2631 3247 -25 1992 142 51 12 chr12 26645451 26645782 -117636707 - MER2 DNA MER2_type 0 344 1 363 283 150 18 chr12 26645804 26646030 -117636459 + MIR SINE MIR 7 262 0 794 241 51 8 chr12 26646512 26646749 -117635740 - MIR SINE MIR 0 262 16 235 294 144 60 chr12 26646853 26647007 -117635482 + MIR SINE MIR 18 182 -62 259 206 0 0 chr12 26647063 26647126 -117635363 + L1MC4 LINE L1 6640 6702 -1340 2168 113 3 7 chr12 26647126 26647435 -117635054 - AluSx SINE Alu -4 308 1 1410 187 154 26 chr12 26647453 26647758 -117634731 + MER2 DNA MER2_type 1 344 0 1017 164 25 35 chr12 26647925 26648126 -117634363 + MER3 DNA MER1_type 5 203 -6 21 0 0 0 chr12 26648171 26648192 -117634297 + AT_rich Low_complexity Low_complexity 1 21 0 3121 204 61 40 chr12 26648481 26649305 -117633184 + MER63C DNA MER1_type 1 841 -89 996 269 29 95 chr12 26649399 26649946 -117632543 + L2 LINE L2 2107 2617 -697 2273 129 121 5 chr12 26649958 26650337 -117632152 + MSTA LTR MaLR 6 428 0 348 299 134 12 chr12 26650338 26650481 -117632008 + L2 LINE L2 2626 2793 -521 2367 191 30 26 chr12 26650481 26650984 -117631505 + MLT1D LTR MaLR 1 505 0 348 299 134 12 chr12 26650984 26651004 -117631485 + L2 LINE L2 2793 2809 -505 541 321 147 22 chr12 26651676 26652315 -117630174 - L2 LINE L2 -571 2743 2025 821 289 43 4 chr12 26652768 26653000 -117629489 - MIR SINE MIR -1 261 21 3347 100 40 2 chr12 26653222 26653673 -117628816 + MER1A DNA MER1_type 62 529 0 283 263 192 0 chr12 26654135 26654234 -117628255 + L2 LINE L2 3196 3313 0 1666 141 12 0 chr12 26656053 26656308 -117626181 + AluSx SINE Alu 44 301 -11 2213 112 7 0 chr12 26656737 26657040 -117625449 - AluSx SINE Alu -7 305 1 21 82 0 0 chr12 26657432 26657481 -117625008 + AT_rich Low_complexity Low_complexity 1 49 0 344 314 113 10 chr12 26658935 26659139 -117623350 + MIR SINE MIR 37 261 -1 28 0 0 0 chr12 26659321 26659349 -117623140 + AT_rich Low_complexity Low_complexity 1 28 0 519 198 78 17 chr12 26660994 26661110 -117621379 - L2 LINE L2 0 3313 3191 2601 191 21 19 chr12 26661443 26661967 -117620522 + MER63 DNA MER1_type 515 1039 -22 1217 302 65 9 chr12 26661967 26662584 -117619905 + L2 LINE L2 2438 3089 -224 628 223 40 14 chr12 26662621 26662769 -117619720 + MIR SINE MIR 90 241 -21 218 185 0 37 chr12 26662789 26662843 -117619646 + (TTA)n Simple_repeat Simple_repeat 2 53 0 700 253 33 0 chr12 26662849 26663031 -117619458 + L2 LINE L2 3123 3310 -3 276 294 65 0 chr12 26663738 26663830 -117618659 + L2 LINE L2 3142 3239 -33 324 213 128 121 chr12 26663991 26664132 -117618357 + MIR SINE MIR 20 161 -101 192 361 33 16 chr12 26665202 26665324 -117617165 - MIR SINE MIR -6 256 133 332 306 122 7 chr12 26665621 26665768 -117616721 - MIR SINE MIR -59 203 40 228 263 164 40 chr12 26666284 26666436 -117616053 - MIR SINE MIR -86 176 6 361 154 45 18 chr12 26667686 26667796 -117614693 + CT-rich Low_complexity Low_complexity 4 116 0 215 323 23 53 chr12 26669109 26669242 -117613247 + L3 LINE CR1 1247 1375 -202 227 294 44 0 chr12 26669304 26669372 -117613117 + L2 LINE L2 3202 3272 0 1039 249 88 53 chr12 26670150 26670295 -117612194 + L2 LINE L2 2553 2692 -621 2310 118 0 0 chr12 26670295 26670599 -117611890 + AluSx SINE Alu 1 304 -8 1039 249 88 53 chr12 26670599 26671132 -117611357 + L2 LINE L2 2692 3253 -60 2350 125 6 15 chr12 26671132 26671468 -117611021 - MER1B DNA MER1_type 0 337 5 1039 249 88 53 chr12 26671468 26671525 -117610964 + L2 LINE L2 3253 3307 -6 196 309 122 32 chr12 26671912 26672035 -117610454 - L3b LINE CR1 -229 1354 1221 375 23 0 0 chr12 26672502 26672546 -117609943 + (TG)n Simple_repeat Simple_repeat 2 45 0 1475 171 106 86 chr12 26672868 26673254 -117609235 - MSTD LTR MaLR 0 396 3 200 324 68 0 chr12 26673359 26673433 -117609056 - L2 LINE L2 -47 3225 3147 355 259 49 56 chr12 26673656 26673818 -117608671 + MER5A DNA MER1_type 1 161 -28 820 194 0 0 chr12 26673887 26674021 -117608468 + FRAM SINE Alu 25 158 -18 201 253 200 20 chr12 26675231 26675381 -117607108 + L3b LINE CR1 1213 1389 -194 2205 47 4 0 chr12 26675500 26675753 -117606736 + L1PA7 LINE L1 5901 6154 0 284 311 38 56 chr12 26675932 26675980 -117606509 + L1ME4a LINE L1 5581 5628 -493 1482 210 69 3 chr12 26675980 26676299 -117606190 + MER58B DNA MER1_type 2 341 0 284 311 38 56 chr12 26676299 26676591 -117605898 + L1ME4a LINE L1 5628 5915 -206 2013 150 3 0 chr12 26677400 26677700 -117604789 + AluJb SINE Alu 1 301 -11 21 0 0 0 chr12 26678456 26678477 -117604012 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 26679047 26679071 -117603418 + AT_rich Low_complexity Low_complexity 1 24 0 644 283 24 39 chr12 26680333 26680568 -117601921 - MIR SINE MIR -19 243 16 1941 200 97 16 chr12 26680835 26681319 -117601170 + Charlie1b DNA MER1_type 1 523 0 563 178 0 19 chr12 26681539 26681646 -117600843 - FLAM_A SINE Alu -4 138 34 366 285 59 55 chr12 26681722 26681975 -117600514 - HAL1 LINE L1 -9 2498 2245 530 86 0 0 chr12 26682226 26682296 -117600193 - AluSc SINE Alu -7 302 233 392 377 40 5 chr12 26682386 26682585 -117599904 - HAL1 LINE L1 -1477 1030 825 367 359 72 49 chr12 26682662 26683149 -117599340 - HAL1 LINE L1 -2009 498 1 1015 182 50 50 chr12 26683805 26683944 -117598545 - L1ME1 LINE L1 -9 6169 6032 470 17 0 17 chr12 26683944 26684004 -117598485 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 2154 109 7 0 chr12 26684004 26684289 -117598200 - AluSx SINE Alu -25 287 1 1015 182 50 50 chr12 26684289 26684974 -117597515 - L1ME1 LINE L1 -145 6033 5187 2123 145 0 0 chr12 26685308 26685605 -117596884 - AluSx SINE Alu -15 297 1 565 347 28 16 chr12 26686244 26686495 -117595994 + L2 LINE L2 2553 2806 -508 745 244 74 11 chr12 26687636 26687812 -117594677 + MIR SINE MIR 2 188 -74 219 69 0 0 chr12 26687812 26687841 -117594648 + (TG)n Simple_repeat Simple_repeat 2 30 0 494 301 98 61 chr12 26688360 26688768 -117593721 - L2 LINE L2 -2 3270 2848 216 0 0 0 chr12 26689388 26689412 -117593077 + (T)n Simple_repeat Simple_repeat 1 24 0 382 307 26 48 chr12 26691308 26691536 -117590953 - MARNA DNA Mariner -62 524 302 190 361 19 9 chr12 26691556 26691664 -117590825 + MIR3 SINE MIR 15 123 -85 677 54 21 0 chr12 26692031 26692124 -117590365 + (TTCCC)n Simple_repeat Simple_repeat 5 99 0 180 361 0 16 chr12 26692125 26692186 -117590303 - MER5B DNA MER1_type 0 178 119 2096 120 7 10 chr12 26692235 26692534 -117589955 - AluSx SINE Alu -14 298 1 744 195 0 0 chr12 26692757 26692880 -117589609 - FLAM_C SINE Alu -18 125 3 185 269 75 97 chr12 26693739 26693832 -117588657 + L2 LINE L2 3181 3271 -1 400 185 163 0 chr12 26694678 26694770 -117587719 - L2 LINE L2 -5 3267 3161 470 195 127 8 chr12 26695354 26695472 -117587017 + L2 LINE L2 3136 3267 -5 252 213 225 12 chr12 26696243 26696323 -117586166 - L2 LINE L2 -7 3265 3169 846 275 9 0 chr12 26697503 26697714 -117584775 - MIR SINE MIR -36 226 14 327 311 28 19 chr12 26698168 26698274 -117584215 - L2 LINE L2 -13 3259 3153 207 0 0 0 chr12 26698484 26698507 -117583982 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 422 314 63 63 chr12 26698919 26699282 -117583207 + L2 LINE L2 1565 1927 -1387 397 313 157 40 chr12 26699315 26699572 -117582917 - L2 LINE L2 -953 2361 2063 941 255 114 52 chr12 26699572 26700106 -117582383 + MLT1F1 LTR MaLR 1 567 0 397 313 157 40 chr12 26700106 26700148 -117582341 - L2 LINE L2 -1251 2063 2027 1445 190 61 28 chr12 26700234 26700628 -117581861 - L1ME2 LINE L1 -1 6163 5757 642 226 16 0 chr12 26700808 26700932 -117581557 + FLAM_A SINE Alu 1 126 -7 423 38 0 0 chr12 26701146 26701199 -117581290 + (CA)n Simple_repeat Simple_repeat 2 54 0 258 331 121 13 chr12 26702796 26702953 -117579536 + MIR SINE MIR 85 258 -4 2132 80 0 0 chr12 26703877 26704140 -117578349 - AluSg SINE Alu -35 275 13 1587 185 3 20 chr12 26704171 26704463 -117578026 + AluJo SINE Alu 1 287 -25 300 259 80 68 chr12 26705078 26705240 -117577249 + L1M2 LINE L1 1180 1343 -5506 298 301 154 0 chr12 26706145 26706288 -117576201 - MIR SINE MIR -12 250 86 387 295 58 12 chr12 26706426 26706605 -117575884 - MIR SINE MIR -49 213 31 993 170 0 0 chr12 26707644 26707797 -117574692 - AluSg/x SINE Alu -24 288 136 693 264 0 0 chr12 26707830 26707974 -117574515 + MIR SINE MIR 80 223 -39 392 0 21 0 chr12 26710480 26710528 -117571961 + (TA)n Simple_repeat Simple_repeat 2 50 0 1950 163 0 3 chr12 26710563 26710864 -117571625 + AluSx SINE Alu 1 300 -12 2048 157 21 0 chr12 26711417 26711754 -117570735 + MER2 DNA MER2_type 1 344 0 1741 130 80 44 chr12 26712313 26712675 -117569814 - THE1C LTR MaLR 0 375 1 219 180 60 20 chr12 26712793 26712843 -117569646 - L3 LINE CR1 -10 1567 1516 1496 210 33 46 chr12 26713157 26713552 -117568937 - MLT1B LTR MaLR 0 390 1 301 260 58 143 chr12 26716872 26717180 -117565309 - L1ME3A LINE L1 -112 6041 5760 1921 136 17 31 chr12 26717182 26717476 -117565013 + AluJb SINE Alu 1 290 -22 329 298 61 53 chr12 26717496 26717771 -117564718 - L1ME3A LINE L1 -415 5689 5491 372 268 150 0 chr12 26717779 26717932 -117564557 - L1ME3A LINE L1 -707 5438 5263 311 320 67 43 chr12 26717973 26718601 -117563888 - L1ME3A LINE L1 -914 5215 4573 514 282 61 71 chr12 26718861 26719264 -117563225 - L1ME3A LINE L1 -4971 1148 751 396 0 0 0 chr12 26719264 26719308 -117563181 + (TG)n Simple_repeat Simple_repeat 2 45 0 514 282 61 71 chr12 26719308 26719497 -117562992 - L1ME3A LINE L1 -5368 751 562 890 203 66 85 chr12 26719514 26719937 -117562552 - L1MC5 LINE L1 -44 7917 7503 249 128 0 0 chr12 26719967 26720014 -117562475 + (TC)n Simple_repeat Simple_repeat 2 48 0 233 225 56 28 chr12 26720059 26720130 -117562359 - L1ME3A LINE L1 -5548 571 499 260 291 0 12 chr12 26720216 26720302 -117562187 - L1ME3A LINE L1 -6029 90 6 279 274 108 0 chr12 26720341 26720443 -117562046 + MIR SINE MIR 95 207 -55 257 210 136 0 chr12 26722846 26722927 -117559562 - MIR SINE MIR -120 142 51 646 233 67 22 chr12 26723279 26723459 -117559030 + L2 LINE L2 3120 3307 -6 407 298 106 21 chr12 26723934 26724075 -117558414 - MIR SINE MIR -109 153 1 24 67 0 0 chr12 26724247 26724292 -117558197 + AT_rich Low_complexity Low_complexity 1 45 0 209 319 101 0 chr12 26724555 26724624 -117557865 + L2 LINE L2 3149 3224 -48 794 216 93 10 chr12 26724927 26725121 -117557368 - MER63A DNA MER1_type 0 210 1 247 302 35 0 chr12 26725485 26725571 -117556918 + MIR SINE MIR 172 260 -2 429 179 0 13 chr12 26725715 26725793 -117556696 + MER5A DNA MER1_type 2 78 -111 12351 22 0 0 chr12 26725793 26727309 -117555180 - L1P LINE L1 -743 5403 3888 4253 14 4 0 chr12 26727303 26727808 -117554681 + L1PA2 LINE L1 5508 6014 -141 * 2133 136 15 0 chr12 26727939 26728271 -117554218 + MER4B-int LTR ERV1 6422 6758 0 3494 130 6 38 chr12 26728271 26728901 -117553588 + MER4B LTR ERV1 1 610 0 578 246 0 3 chr12 26728903 26729039 -117553450 + MLT1A1 LTR MaLR 243 365 0 395 290 57 16 chr12 26729113 26729237 -117553252 - L2 LINE L2 -2 3270 3142 1335 19 0 0 chr12 26730246 26730402 -117552087 + L1PA2 LINE L1 6000 6155 0 430 269 83 0 chr12 26730402 26730510 -117551979 + MER5A DNA MER1_type 62 178 -11 180 0 0 0 chr12 26732148 26732168 -117550321 + (A)n Simple_repeat Simple_repeat 1 20 0 319 322 196 19 chr12 26732444 26732960 -117549529 + L2 LINE L2 2142 2748 -566 269 313 112 26 chr12 26733054 26733192 -117549297 + L2 LINE L2 2898 3048 -224 2314 92 3 0 chr12 26735114 26735407 -117547082 - AluSq SINE Alu -16 297 4 324 226 11 158 chr12 26735550 26735727 -117546762 + MIR SINE MIR 111 261 -1 241 408 58 25 chr12 26735882 26736002 -117546487 + L2 LINE L2 3144 3267 -5 189 0 0 0 chr12 26737646 26737667 -117544822 + (A)n Simple_repeat Simple_repeat 1 21 0 665 263 11 34 chr12 26739570 26739745 -117542744 - MIR SINE MIR -29 233 63 1834 117 91 11 chr12 26740019 26740293 -117542196 + AluSx SINE Alu 6 301 -11 189 0 0 0 chr12 26740554 26740575 -117541914 + (CA)n Simple_repeat Simple_repeat 2 22 0 841 175 0 0 chr12 26740764 26740890 -117541599 + FLAM_C SINE Alu 1 126 -7 189 0 0 0 chr12 26744835 26744856 -117537633 + (A)n Simple_repeat Simple_repeat 1 21 0 246 210 0 16 chr12 26745227 26745289 -117537200 - L1MC4 LINE L1 -1334 6708 6648 225 154 0 0 chr12 26747163 26747202 -117535287 + T-rich Low_complexity Low_complexity 2 40 0 6263 52 25 0 chr12 26747202 26747976 -117534513 - L1PA7 LINE L1 0 6154 5362 1663 72 18 0 chr12 26747972 26748193 -117534296 + L1PA7 LINE L1 5129 5353 -793 * 479 230 144 16 chr12 26748231 26748418 -117534071 + MIR SINE MIR 46 256 -6 22 35 0 0 chr12 26749181 26749210 -117533279 + AT_rich Low_complexity Low_complexity 1 29 0 192 40 0 0 chr12 26751337 26751362 -117531127 + (TC)n Simple_repeat Simple_repeat 2 26 0 358 282 185 56 chr12 26753895 26754094 -117528395 + MIR SINE MIR 6 236 -26 234 91 0 0 chr12 26754094 26754127 -117528362 + (ATGGTG)n Simple_repeat Simple_repeat 6 38 0 358 282 185 56 chr12 26754127 26754143 -117528346 + MIR SINE MIR 236 249 -13 23 0 0 0 chr12 26755798 26755821 -117526668 + AT_rich Low_complexity Low_complexity 1 23 0 333 289 97 9 chr12 26755978 26756092 -117526397 - MIR3 SINE MIR -2 206 83 806 265 11 52 chr12 26756610 26756882 -117525607 + MIR SINE MIR 1 261 -1 624 287 152 30 chr12 26758974 26759483 -117523006 - L2 LINE L2 -31 3282 2703 405 123 0 0 chr12 26760147 26760212 -117522277 + (TTCC)n Simple_repeat Simple_repeat 1 65 0 1427 230 89 67 chr12 26760879 26760936 -117521553 + MLT1D LTR MaLR 3 57 -448 3678 142 6 9 chr12 26760936 26761465 -117521024 - MER1A DNA MER1_type 0 527 1 1427 230 89 67 chr12 26761465 26761899 -117520590 + MLT1D LTR MaLR 57 505 0 1917 163 3 3 chr12 26762176 26762482 -117520007 - AluJo SINE Alu -2 310 5 291 211 97 79 chr12 26762623 26762737 -117519752 - HAL1 LINE L1 -148 2359 2244 557 279 12 17 chr12 26762739 26762911 -117519578 - MER5B DNA MER1_type -4 174 4 2384 88 0 7 chr12 26763061 26763358 -117519131 + AluSc SINE Alu 1 295 -14 1665 192 128 15 chr12 26763418 26763925 -117518564 + MLT1E1 LTR MaLR 1 650 -4 248 269 0 76 chr12 26763939 26764058 -117518431 - HAL1b LINE L1 -474 874 765 2189 104 0 7 chr12 26764058 26764355 -117518134 + AluSx SINE Alu 1 295 -17 744 236 35 31 chr12 26764378 26764607 -117517882 + MIR SINE MIR 6 235 -27 554 308 56 32 chr12 26765201 26765451 -117517038 + MIR SINE MIR 6 261 -1 213 244 0 0 chr12 26766117 26766158 -117516331 - L2 LINE L2 -16 3256 3216 830 159 19 13 chr12 26766213 26766370 -117516119 - MER34C LTR ERV1 -2 583 426 588 165 132 8 chr12 26766396 26766517 -117515972 - MER34C LTR ERV1 -449 136 1 2431 214 84 5 chr12 26766620 26767251 -117515238 + L1M4 LINE L1 2415 3095 -3051 248 197 0 0 chr12 26767270 26767336 -117515153 + L1M4 LINE L1 3217 3282 -2864 26789 137 12 16 chr12 26767337 26768128 -117514361 + L1PA8A LINE L1 5 798 -5648 1993 158 176 29 chr12 26768128 26768570 -117513919 + LTR22 LTR ERVK 1 507 -2 26789 137 12 16 chr12 26768570 26769002 -117513487 + L1PA8A LINE L1 798 1230 -5216 216 97 0 0 chr12 26769002 26769033 -117513456 + (CAA)n Simple_repeat Simple_repeat 3 33 0 26789 137 12 16 chr12 26769033 26771277 -117511212 + L1PA8A LINE L1 1230 3481 -2965 2200 105 3 3 chr12 26771277 26771573 -117510916 - AluY SINE Alu -15 296 1 26789 137 12 16 chr12 26771573 26774508 -117507981 + L1PA8A LINE L1 3481 6445 -1 2119 248 40 26 chr12 26774532 26775185 -117507304 + L1M4 LINE L1 3322 3983 -2163 * 6571 79 19 2 chr12 26775171 26776062 -117506427 + L1PA10 LINE L1 5263 6168 0 268 246 8 51 chr12 26776093 26776211 -117506278 + L1MB8 LINE L1 6066 6178 0 3501 242 108 87 chr12 26776842 26778811 -117503678 - L2 LINE L2 0 3313 1299 2196 98 0 32 chr12 26779482 26779843 -117502646 - AluSx SINE Alu 0 312 1 326 298 87 43 chr12 26779913 26780121 -117502368 + MIR SINE MIR 25 241 -21 195 42 0 0 chr12 26780257 26780281 -117502208 + (TA)n Simple_repeat Simple_repeat 1 24 0 2881 218 58 33 chr12 26780292 26781027 -117501462 - MER21B LTR ERV1 -7 856 103 276 53 0 0 chr12 26782272 26782310 -117500179 + (CA)n Simple_repeat Simple_repeat 2 39 0 1318 222 18 13 chr12 26782411 26782719 -117499770 + MER33 DNA MER1_type 1 302 -22 443 290 73 12 chr12 26783021 26783204 -117499285 + MIR3 SINE MIR 5 200 -8 274 310 11 0 chr12 26783443 26783530 -117498959 + GA-rich Low_complexity Low_complexity 3 90 0 1734 160 34 115 chr12 26785180 26785598 -117496891 - MLT1B LTR MaLR -3 387 4 2219 103 7 7 chr12 26787161 26787463 -117495026 + AluSg SINE Alu 1 302 -8 614 248 52 19 chr12 26787969 26788156 -117494333 + MIR SINE MIR 25 215 -47 296 48 24 0 chr12 26788869 26788911 -117493578 + (CAT)n Simple_repeat Simple_repeat 1 43 0 349 277 45 74 chr12 26788936 26789037 -117493452 - MIR SINE MIR -20 242 148 1692 141 31 34 chr12 26789037 26789351 -117493138 - AluJo SINE Alu 0 312 3 349 277 45 74 chr12 26789351 26789451 -117493038 - MIR SINE MIR -114 148 47 537 282 47 66 chr12 26790449 26790618 -117491871 - L2 LINE L2 0 3313 3151 1828 174 38 0 chr12 26790618 26790911 -117491578 + AluJo SINE Alu 1 304 -8 537 282 47 66 chr12 26790911 26791060 -117491429 - L2 LINE L2 -162 3151 3001 571 329 68 4 chr12 26791213 26791462 -117491027 - L2 LINE L2 -575 2739 2475 559 305 140 25 chr12 26791619 26791983 -117490506 - MER115 DNA AcHobo -287 406 1 3132 163 21 16 chr12 26792095 26792664 -117489825 + L1PB4 LINE L1 5584 6155 -1 314 291 152 7 chr12 26795046 26795197 -117487292 + MER5A DNA MER1_type 9 181 -8 301 161 18 0 chr12 26795468 26795524 -117486965 + MER117 DNA MER1_type 60 116 -81 1858 200 62 62 chr12 26795588 26796102 -117486387 + MLT2B3 LTR ERVL 1 514 -40 206 207 17 0 chr12 26796169 26796227 -117486262 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 334 140 0 0 chr12 26796227 26796277 -117486212 + MLT2B3 LTR ERVL 464 513 -7 760 177 0 15 chr12 26796623 26796753 -117485736 - FLAM_A SINE Alu -5 128 1 203 358 33 8 chr12 26796931 26797051 -117485438 + MIR SINE MIR 5 127 -135 189 196 0 22 chr12 26797299 26797345 -117485144 + L3 LINE CR1 1528 1572 -5 1710 193 50 14 chr12 26797675 26798033 -117484456 + MLT1B LTR MaLR 20 390 0 207 171 0 0 chr12 26800217 26800252 -117482237 + (CAGGC)n Simple_repeat Simple_repeat 2 36 0 218 353 128 5 chr12 26801441 26801628 -117480861 - MIR SINE MIR -6 256 47 806 295 69 49 chr12 26803172 26803935 -117478554 - L2 LINE L2 0 3313 2531 596 263 37 95 chr12 26803920 26804247 -117478242 + L2 LINE L2 2957 3264 -49 * 2297 100 7 0 chr12 26804259 26804558 -117477931 + AluSq SINE Alu 1 301 -12 268 277 43 21 chr12 26804573 26804667 -117477822 - L2 LINE L2 -783 2531 2436 593 251 57 11 chr12 26804668 26804843 -117477646 + HERV16 LTR ERVL 1754 1936 -3060 1369 339 32 11 chr12 26804851 26805477 -117477012 + HERV16 LTR ERVL 3016 3654 -2000 1378 332 46 18 chr12 26805511 26806245 -117476244 + HERV16 LTR ERVL 3758 4534 -1230 936 136 26 0 chr12 26806247 26806402 -117476087 + MER5A DNA MER1_type 1 159 -30 1883 92 18 25 chr12 26806412 26806694 -117475795 - L1MA2 LINE L1 -9 6295 6016 624 251 0 54 chr12 26806961 26807128 -117475361 - MER105 DNA DNA -40 164 7 371 378 0 0 chr12 26807137 26807293 -117475196 + HERV16 LTR ERVL 4729 4884 -880 5362 144 21 11 chr12 26807298 26808152 -117474337 - Tigger1 DNA MER2_type -1554 864 2 374 290 86 67 chr12 26808277 26808631 -117473858 - L1MC/D LINE L1 -413 5708 5397 2483 86 0 0 chr12 26808631 26808933 -117473556 - AluSc SINE Alu -7 302 1 374 290 86 67 chr12 26808933 26809067 -117473422 - L1MC/D LINE L1 -724 5397 5267 385 75 19 0 chr12 26809136 26809189 -117473300 + MSTB1 LTR MaLR 1 54 -378 329 220 289 38 chr12 26809541 26809700 -117472789 - MLT1L LTR MaLR -55 560 362 216 271 57 29 chr12 26810593 26810663 -117471826 - L2 LINE L2 0 3272 3201 257 270 54 0 chr12 26812191 26812265 -117470224 - L1MC4 LINE L1 -1337 6705 6628 342 337 128 0 chr12 26812309 26812496 -117469993 + LTR16A LTR ERVL 16 226 -224 232 162 0 0 chr12 26812627 26812664 -117469825 + LTR16A1 LTR ERVL 419 455 -2 1025 291 66 28 chr12 26812705 26813162 -117469327 + HERV16 LTR ERVL 74 547 -4449 213 94 0 0 chr12 26813217 26813249 -117469240 + (T)n Simple_repeat Simple_repeat 1 32 0 241 28 0 0 chr12 26813363 26813399 -117469090 - L1PA3 LINE L1 -1 6154 6119 2431 84 0 0 chr12 26813619 26813915 -117468574 - AluY SINE Alu -15 296 1 238 88 18 123 chr12 26815071 26815128 -117467361 - MER39 LTR ERV1 -143 564 514 234 316 58 58 chr12 26815833 26816004 -117466485 - MIR SINE MIR -6 256 86 2292 205 80 42 chr12 26816697 26817621 -117464868 + L1ME2 LINE L1 5127 6074 -90 729 79 0 0 chr12 26817621 26817722 -117464767 + (TG)n Simple_repeat Simple_repeat 2 102 0 11350 172 53 14 chr12 26817758 26818305 -117464184 + L1MB1 LINE L1 2874 3398 -2770 2254 169 15 20 chr12 26818305 26818701 -117463788 - MSTD LTR MaLR -2 394 1 11350 172 53 14 chr12 26818701 26820641 -117461848 + L1MB1 LINE L1 3398 5505 -663 207 0 0 0 chr12 26820641 26820664 -117461825 + (CA)n Simple_repeat Simple_repeat 2 24 0 11350 172 53 14 chr12 26820664 26821211 -117461278 + L1MB1 LINE L1 5505 6029 -139 2045 120 3 17 chr12 26821213 26821512 -117460977 - AluSx SINE Alu -5 307 13 614 248 52 19 chr12 26821908 26822095 -117460394 + MIR SINE MIR 25 215 -47 296 48 24 0 chr12 26822808 26822850 -117459639 + (CAT)n Simple_repeat Simple_repeat 1 43 0 316 230 50 20 chr12 26822875 26822975 -117459514 - MIR SINE MIR -20 242 140 1658 160 20 24 chr12 26822976 26823292 -117459197 - AluJo SINE Alu 0 312 1 1818 114 21 17 chr12 26825008 26825298 -117457191 + AluSq SINE Alu 7 297 -16 553 244 14 0 chr12 26827077 26827223 -117455266 + Charlie3 DNA MER1_type 4 113 -2597 28232 127 20 69 chr12 26827526 26832795 -117449694 - L1P LINE L1 -1136 5010 1 1759 178 14 0 chr12 26832830 26833123 -117449366 + AluJb SINE Alu 1 297 -15 187 327 115 9 chr12 26834728 26834841 -117447648 + MIR SINE MIR 22 146 -116 892 291 105 25 chr12 26835016 26835542 -117446947 + L1ME4a LINE L1 5538 6105 -16 1100 273 58 81 chr12 26836547 26836880 -117445609 - L2 LINE L2 -15 3298 2976 2193 121 0 31 chr12 26836880 26837202 -117445287 + AluSx SINE Alu 1 312 0 1100 273 58 81 chr12 26837202 26837301 -117445188 - L2 LINE L2 -337 2976 2876 365 275 231 0 chr12 26837321 26837481 -117445008 - L2 LINE L2 -568 2746 2550 1462 231 20 3 chr12 26837499 26837797 -117444692 + MER82 DNA MER2_type 348 650 -3 763 281 148 75 chr12 26837810 26838296 -117444193 - L2 LINE L2 -980 2334 1885 2090 117 3 13 chr12 26838296 26838595 -117443894 + AluSx SINE Alu 1 296 -16 763 281 148 75 chr12 26838595 26838636 -117443853 - L2 LINE L2 -1429 1885 1848 2558 101 3 3 chr12 26838636 26838982 -117443507 - L1MA1 LINE L1 -4 6298 5953 763 281 148 75 chr12 26838982 26839122 -117443367 - L2 LINE L2 -1466 1848 1617 646 316 21 0 chr12 26839159 26839352 -117443137 - MIR SINE MIR -62 200 4 224 314 144 25 chr12 26840350 26840468 -117442021 - L2 LINE L2 0 3272 3141 380 224 88 41 chr12 26840511 26840658 -117441831 + MIR SINE MIR 64 217 -45 2975 87 30 2 chr12 26841195 26841588 -117440901 + MLT2A1 LTR ERVL 1 404 -40 265 68 68 136 chr12 26841623 26841682 -117440807 + MLT2A1 LTR ERVL 399 453 0 302 290 90 32 chr12 26842046 26842201 -117440288 + L2 LINE L2 3145 3308 -5 1641 206 45 22 chr12 26842334 26842689 -117439800 - MLT1A1 LTR MaLR -1 364 2 769 274 93 0 chr12 26842757 26842983 -117439506 + MIR SINE MIR 16 262 0 21 0 0 0 chr12 26843383 26843404 -117439085 + AT_rich Low_complexity Low_complexity 1 21 0 1996 121 4 0 chr12 26844565 26844837 -117437652 + AluSg SINE Alu 21 293 -17 396 0 0 0 chr12 26844841 26844885 -117437604 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 373 333 133 41 chr12 26845243 26845588 -117436901 + L2 LINE L2 1992 2368 -946 984 314 125 10 chr12 26845778 26846298 -117436191 - L3 LINE CR1 -672 905 326 334 277 110 27 chr12 26846481 26846707 -117435782 - L1ME4a LINE L1 -188 5933 5676 2008 185 0 36 chr12 26846707 26847064 -117435425 - MER2 DNA MER2_type 0 344 1 334 277 110 27 chr12 26847064 26847129 -117435360 - L1ME4a LINE L1 -445 5676 5618 1384 126 17 26 chr12 26847141 26847371 -117435118 + MER50 LTR ERV1 7 234 -500 * 1427 149 80 80 chr12 26847359 26847661 -117434828 + MER50 LTR ERV1 433 734 0 341 227 87 93 chr12 26847758 26847908 -117434581 - MLT1J2 LTR MaLR -30 420 272 1525 283 65 44 chr12 26848132 26848744 -117433745 + MLT2F LTR ERVL 37 661 -2 7623 41 7 0 chr12 26848797 26850085 -117432404 - L1PA5 LINE L1 -8 6146 4846 21 0 0 0 chr12 26852553 26852574 -117429915 + AT_rich Low_complexity Low_complexity 1 21 0 407 217 91 74 chr12 26857115 26857315 -117425174 - MIR SINE MIR -54 208 8 293 295 38 9 chr12 26857831 26857936 -117424553 + MER5A DNA MER1_type 11 118 -71 182 227 120 27 chr12 26858297 26858372 -117424117 - MIR SINE MIR -37 225 144 551 130 9 65 chr12 26858421 26858529 -117423960 + MSTB1 LTR MaLR 1 102 -330 22 0 0 0 chr12 26858529 26858551 -117423938 + GC_rich Low_complexity Low_complexity 1 22 0 1926 161 30 134 chr12 26859286 26859496 -117422993 + MSTB2 LTR MaLR 1 129 -328 2189 115 3 10 chr12 26859496 26859801 -117422688 - AluSp SINE Alu -8 305 3 1926 161 30 134 chr12 26859801 26860098 -117422391 + MSTB2 LTR MaLR 129 455 -2 211 246 18 18 chr12 26860103 26860160 -117422329 - MIR SINE MIR -180 82 26 * 230 362 135 29 chr12 26860158 26860292 -117422197 - L2 LINE L2 -2420 894 776 1023 148 28 0 chr12 26860292 26860468 -117422021 + L1MB3 LINE L1 6003 6183 0 230 362 135 29 chr12 26860468 26860792 -117421697 - L2 LINE L2 -2538 776 380 1407 202 145 26 chr12 26860792 26861144 -117421345 + MSTD LTR MaLR 3 396 0 230 362 135 29 chr12 26861144 26861167 -117421322 - L2 LINE L2 -2934 380 361 359 322 81 27 chr12 26861575 26861724 -117420765 - L2 LINE L2 0 3272 3116 1797 169 80 0 chr12 26862179 26862493 -117419996 - MER44D DNA MER2_type 0 609 1 2187 101 7 7 chr12 26863235 26863532 -117418957 + AluSq SINE Alu 1 297 -16 576 267 26 26 chr12 26863606 26863797 -117418692 + MIR3 SINE MIR 16 206 -2 544 281 90 24 chr12 26864292 26864522 -117417967 - MIR SINE MIR -19 243 4 965 200 6 0 chr12 26865601 26865766 -117416723 + AluJo SINE Alu 1 166 -146 428 256 0 0 chr12 26865766 26865844 -117416645 + AluSc SINE Alu 85 162 -147 1154 206 0 0 chr12 26865844 26866062 -117416427 + AluJo SINE Alu 85 302 -10 953 182 0 6 chr12 26868396 26868555 -117413934 + AluJb SINE Alu 131 288 -24 250 285 170 63 chr12 26869047 26869430 -117413059 + LTR67 LTR ERVL 122 545 -12 702 265 78 0 chr12 26869736 26869902 -117412587 - MER63A DNA MER1_type -31 179 1 197 273 45 30 chr12 26869956 26870022 -117412467 - MIR SINE MIR -102 106 40 2356 87 7 0 chr12 26870886 26871185 -117411304 + AluSx SINE Alu 1 301 -11 2124 113 30 13 chr12 26871555 26871857 -117410632 - AluSp SINE Alu -5 308 2 952 180 73 22 chr12 26871863 26872041 -117410448 + MER5A DNA MER1_type 3 189 0 2263 78 17 3 chr12 26874037 26874330 -117408159 + AluSq SINE Alu 1 297 -16 3603 109 26 43 chr12 26876109 26876642 -117405847 + MER1A DNA MER1_type 4 527 0 870 87 0 39 chr12 26876757 26876884 -117405605 + L1PA8 LINE L1 6043 6164 -8 681 217 66 57 chr12 26877313 26877525 -117404964 + L2 LINE L2 3100 3313 0 274 192 0 0 chr12 26877568 26877620 -117404869 - MIR SINE MIR -164 98 47 231 343 111 0 chr12 26881292 26881400 -117401089 - MIR3 SINE MIR -1 207 88 542 257 53 26 chr12 26881574 26881726 -117400763 - MIR SINE MIR -98 164 9 1444 273 87 26 chr12 26881826 26882617 -117399872 - L2 LINE L2 0 3313 2467 1375 275 71 80 chr12 26882742 26883459 -117399030 + MER21B LTR ERV1 29 739 -124 2247 97 0 3 chr12 26883753 26884076 -117398413 - AluSg SINE Alu 0 310 1 180 171 146 0 chr12 26884417 26884458 -117398031 - MIR3 SINE MIR -26 182 136 * 209 274 53 42 chr12 26884444 26884539 -117397950 - L2 LINE L2 -1 3312 3217 224 326 53 23 chr12 26885293 26885425 -117397064 + L2 LINE L2 3176 3311 -2 376 218 79 0 chr12 26885516 26885617 -117396872 - MIR SINE MIR -65 197 89 596 133 0 0 chr12 26886752 26886835 -117395654 - 5S rRNA rRNA -38 83 1 183 354 69 31 chr12 26887417 26887547 -117394942 + L2 LINE L2 3137 3271 -1 296 260 164 34 chr12 26887705 26887851 -117394638 - MIR SINE MIR -10 252 88 305 301 0 0 chr12 26888860 26888943 -117393546 - L2 LINE L2 -6 3307 3225 1430 147 57 8 chr12 26888949 26889194 -117393295 + AluJb SINE Alu 32 288 -24 192 357 66 29 chr12 26889538 26889782 -117392707 + L2 LINE L2 2521 2773 -541 194 33 67 0 chr12 26889791 26889821 -117392668 + CT-rich Low_complexity Low_complexity 4 35 0 188 350 52 21 chr12 26889821 26889835 -117392654 + L2 LINE L2 2752 2764 -550 1733 169 44 0 chr12 26889835 26890130 -117392359 - AluSx SINE Alu -4 308 1 188 350 52 21 chr12 26890130 26890212 -117392277 + L2 LINE L2 2764 2851 -463 256 358 169 0 chr12 26890304 26890505 -117391984 + L2 LINE L2 3033 3267 -5 232 333 89 7 chr12 26890758 26890893 -117391596 + MIR SINE MIR 4 149 -113 180 357 70 28 chr12 26890980 26891123 -117391366 + L2 LINE L2 2952 3100 -172 463 287 163 27 chr12 26891129 26891678 -117390811 - L2 LINE L2 0 3313 2680 684 194 6 44 chr12 26892244 26892404 -117390085 + MIR SINE MIR 79 232 -30 207 286 0 14 chr12 26893564 26893634 -117388855 + A-rich Low_complexity Low_complexity 2 70 0 4289 133 14 2 chr12 26893974 26894599 -117387890 + MER41B LTR ERV1 3 635 0 2238 102 0 3 chr12 26894600 26894893 -117387596 - AluSg SINE Alu -17 293 2 933 180 73 22 chr12 26894899 26895077 -117387412 + MER5A DNA MER1_type 3 189 0 803 158 8 0 chr12 26896646 26896766 -117385723 - FLAM_C SINE Alu -22 121 1 1406 237 69 89 chr12 26897026 26897677 -117384812 + MER21B LTR ERV1 98 735 -128 2883 13 0 0 chr12 26898024 26898335 -117384154 + AluY SINE Alu 1 311 0 629 321 186 14 chr12 26898672 26899102 -117383387 + L2 LINE L2 2809 3312 -1 336 322 142 11 chr12 26899323 26899506 -117382983 + MIR SINE MIR 18 224 -38 221 171 24 0 chr12 26901506 26901547 -117380942 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 190 357 102 10 chr12 26901557 26901655 -117380834 + L2 LINE L2 3158 3264 -8 2017 160 0 0 chr12 26902543 26902849 -117379640 + AluSx SINE Alu 1 306 -6 314 176 0 0 chr12 26902994 26903045 -117379444 + MSTB LTR MaLR 1 51 -375 198 147 0 0 chr12 26903063 26903097 -117379392 - MIR SINE MIR -111 151 118 2621 157 36 7 chr12 26903097 26903511 -117378978 + MSTB LTR MaLR 1 426 0 2091 99 0 44 chr12 26903621 26903956 -117378533 - AluY SINE Alu 0 322 1 239 305 130 48 chr12 26904826 26905095 -117377394 + L2 LINE L2 1890 2180 -1134 225 312 84 59 chr12 26905182 26905384 -117377105 - MIR SINE MIR -40 222 16 1232 134 51 51 chr12 26909808 26910025 -117372464 - AluJb SINE Alu -10 302 86 2063 222 29 2 chr12 26910184 26910639 -117371850 + L2 LINE L2 2335 2801 -513 504 146 45 0 chr12 26910641 26910730 -117371759 - MER53 DNA DNA 0 189 97 702 333 35 32 chr12 26910744 26911092 -117371397 + L2 LINE L2 2804 3152 -161 406 282 40 20 chr12 26911243 26911392 -117371097 + L2 LINE L2 3162 3313 0 3985 154 44 11 chr12 26911417 26912178 -117370311 + L1MB8 LINE L1 5456 6239 0 247 330 18 49 chr12 26912548 26912692 -117369797 - MIR SINE MIR -51 157 17 189 0 0 0 chr12 26912877 26912898 -117369591 + (TTC)n Simple_repeat Simple_repeat 2 22 0 2351 100 7 3 chr12 26912901 26913211 -117369278 - AluSx SINE Alu -1 311 1 507 264 188 4 chr12 26913407 26913646 -117368843 + L2 LINE L2 2188 2470 -844 245 260 40 90 chr12 26913876 26913976 -117368513 + L2 LINE L2 3219 3313 0 23 68 0 0 chr12 26914893 26914937 -117367552 + AT_rich Low_complexity Low_complexity 1 44 0 442 344 49 9 chr12 26915397 26915621 -117366868 - MIR SINE MIR -6 256 24 305 306 146 30 chr12 26917156 26917355 -117365134 + MIR SINE MIR 28 249 -13 649 315 104 67 chr12 26917631 26918960 -117363529 + L2 LINE L2 1817 3205 -67 360 0 0 0 chr12 26919403 26919443 -117363046 + (TG)n Simple_repeat Simple_repeat 2 41 0 2263 110 0 0 chr12 26919486 26919787 -117362702 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr12 26920390 26920412 -117362077 + AT_rich Low_complexity Low_complexity 1 22 0 216 289 0 0 chr12 26920432 26920484 -117362005 + L2 LINE L2 3217 3268 -4 273 348 145 0 chr12 26920852 26920990 -117361499 - MIR3 SINE MIR -22 186 29 30 45 0 0 chr12 26921620 26921664 -117360825 + AT_rich Low_complexity Low_complexity 1 44 0 220 232 20 0 chr12 26921677 26921776 -117360713 + (TA)n Simple_repeat Simple_repeat 2 102 0 279 243 165 54 chr12 26922113 26922284 -117360205 + MIR3 SINE MIR 3 186 -59 2155 127 3 0 chr12 26922295 26922587 -117359902 + AluSx SINE Alu 3 295 -17 377 363 61 31 chr12 26924236 26924720 -117357769 - L2 LINE L2 -43 3229 2728 867 205 12 0 chr12 26924809 26924975 -117357514 + FRAM SINE Alu 1 167 -9 369 340 130 42 chr12 26925127 26925504 -117356985 - L2 LINE L2 -341 2973 2564 2322 122 0 0 chr12 26926190 26926502 -117355987 + AluSq SINE Alu 1 312 -1 299 234 0 85 chr12 26926575 26926669 -117355820 + MIR SINE MIR 176 261 -1 1827 128 0 0 chr12 26927065 26927322 -117355167 + AluSx SINE Alu 52 308 -4 28 29 0 0 chr12 26927422 26927457 -117355032 + AT_rich Low_complexity Low_complexity 1 35 0 234 0 0 0 chr12 26927768 26927794 -117354695 + (T)n Simple_repeat Simple_repeat 1 26 0 1114 140 45 0 chr12 26928649 26928828 -117353661 - MER20 DNA MER1_type -4 215 29 565 222 41 41 chr12 26929076 26929247 -117353242 + MIR SINE MIR 72 242 -20 666 327 62 48 chr12 26929248 26929606 -117352883 + L2 LINE L2 2910 3272 0 331 321 18 18 chr12 26930604 26930713 -117351776 + L3 LINE CR1 401 509 -1068 308 250 95 25 chr12 26930858 26931034 -117351455 - MER58C DNA MER1_type 0 215 1 189 372 47 14 chr12 26931244 26931392 -117351097 + L3 LINE CR1 816 968 -609 446 219 69 94 chr12 26931863 26932096 -117350393 - L3 LINE CR1 -205 1372 1146 211 396 19 9 chr12 26932230 26932336 -117350153 - MIR3 SINE MIR -87 121 15 354 23 0 0 chr12 26935391 26935434 -117347055 + (CA)n Simple_repeat Simple_repeat 2 44 0 260 288 0 14 chr12 26938253 26938326 -117344163 + MER5A DNA MER1_type 38 109 -80 25 51 0 0 chr12 26938453 26938492 -117343997 + AT_rich Low_complexity Low_complexity 1 39 0 1950 141 43 27 chr12 26938712 26939081 -117343408 + THE1C LTR MaLR 1 375 0 423 182 0 0 chr12 26939148 26939225 -117343264 + L1MA10 LINE L1 6256 6332 -2 458 305 86 10 chr12 26940829 26941026 -117341463 + MIR SINE MIR 13 224 -38 29 70 0 0 chr12 26941028 26941085 -117341404 + AT_rich Low_complexity Low_complexity 1 57 0 24 77 0 0 chr12 26941197 26941249 -117341240 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr12 26942313 26942335 -117340154 + AT_rich Low_complexity Low_complexity 1 22 0 212 205 26 8 chr12 26943444 26943561 -117338928 + (TTAA)n Simple_repeat Simple_repeat 1 119 0 299 197 24 39 chr12 26943583 26943710 -117338779 + (TTAA)n Simple_repeat Simple_repeat 1 125 0 385 364 40 11 chr12 26943780 26943956 -117338533 + MIR3 SINE MIR 16 196 -12 1396 79 0 0 chr12 26945919 26946096 -117336393 - AluSg/x SINE Alu -2 310 134 1854 172 0 3 chr12 26946096 26946399 -117336090 - AluSx SINE Alu -9 303 2 802 145 0 0 chr12 26946450 26946567 -117335922 - FLAM_C SINE Alu -10 133 17 23 33 0 0 chr12 26946603 26946633 -117335856 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr12 26946881 26946906 -117335583 + AT_rich Low_complexity Low_complexity 1 25 0 216 269 19 0 chr12 26947069 26947121 -117335368 - L2 LINE L2 -93 3220 3168 21 57 0 0 chr12 26947406 26947441 -117335048 + AT_rich Low_complexity Low_complexity 1 35 0 254 250 0 33 chr12 26947565 26947625 -117334864 + MER5A DNA MER1_type 27 84 -105 313 229 104 90 chr12 26947644 26947788 -117334701 + MIR SINE MIR 117 262 0 335 280 11 11 chr12 26948118 26948211 -117334278 + MIR3 SINE MIR 110 202 -6 349 247 86 0 chr12 26948737 26948818 -117333671 - MIR SINE MIR -14 248 161 21 0 0 0 chr12 26949595 26949616 -117332873 + AT_rich Low_complexity Low_complexity 1 21 0 192 468 8 0 chr12 26949942 26950066 -117332423 - L3b LINE CR1 -48 1535 1411 2213 102 0 6 chr12 26951204 26951517 -117330972 - AluY SINE Alu 0 311 1 30 45 0 0 chr12 26951905 26951949 -117330540 + AT_rich Low_complexity Low_complexity 1 44 0 249 264 59 26 chr12 26954086 26954199 -117328290 + MIR SINE MIR 29 143 -65 2048 105 14 0 chr12 26954228 26954514 -117327975 - AluSx SINE Alu -20 292 3 1679 101 3 5 chr12 26954515 26954848 -117327641 - L1P4 LINE L1 -664 5501 5170 34 0 0 0 chr12 26957588 26957622 -117324867 + AT_rich Low_complexity Low_complexity 1 34 0 720 191 0 0 chr12 26958124 26958255 -117324234 + FLAM_A SINE Alu 1 131 -2 2230 82 0 0 chr12 26958891 26959199 -117323290 + AluSg SINE Alu 1 308 0 4412 114 11 1 chr12 26959201 26959858 -117322631 + L1PA15 LINE L1 5490 6152 -13 32 26 0 0 chr12 26960052 26960091 -117322398 + AT_rich Low_complexity Low_complexity 1 39 0 577 309 97 47 chr12 26960260 26961133 -117321356 + L1MC4a LINE L1 3376 4292 -1854 413 279 90 33 chr12 26961143 26961387 -117321102 + L1MC4a LINE L1 5815 6072 -1736 722 223 211 57 chr12 26961498 26962108 -117320381 + LTR50 LTR ERVL 3 793 -2 21 0 0 0 chr12 26962602 26962623 -117319866 + AT_rich Low_complexity Low_complexity 1 21 0 201 333 63 18 chr12 26963454 26963565 -117318924 + L3 LINE CR1 1389 1504 -73 2590 227 146 13 chr12 26963604 26964422 -117318067 + L1MC4a LINE L1 6818 7743 -65 262 261 19 137 chr12 26965317 26965478 -117317011 - L2 LINE L2 -4 3309 3168 22 56 0 0 chr12 26965765 26965801 -117316688 + AT_rich Low_complexity Low_complexity 1 36 0 1987 100 0 0 chr12 26965915 26966185 -117316304 + AluSx SINE Alu 7 276 -36 211 271 0 17 chr12 26966333 26966392 -117316097 - L2 LINE L2 -5 3308 3251 188 297 78 0 chr12 26966768 26966832 -117315657 - L2 LINE L2 0 3272 3204 209 289 0 0 chr12 26969409 26969461 -117313028 + L2 LINE L2 3262 3313 0 73 62 0 0 chr12 26969543 26969672 -117312817 + AT_rich Low_complexity Low_complexity 1 129 0 184 282 0 0 chr12 26970327 26970366 -117312123 - L2 LINE L2 -12 3260 3222 2013 108 14 3 chr12 26970783 26971079 -117311410 - AluSc SINE Alu -10 299 1 32 43 0 0 chr12 26971275 26971321 -117311168 + AT_rich Low_complexity Low_complexity 1 46 0 436 273 39 23 chr12 26973647 26973775 -117308714 - L2 LINE L2 0 3313 3184 414 286 56 19 chr12 26975747 26975908 -117306581 + MLT1L LTR MaLR 112 278 -337 216 0 0 0 chr12 26975941 26975965 -117306524 + (CAA)n Simple_repeat Simple_repeat 2 25 0 395 298 90 34 chr12 26976020 26976296 -117306193 + MLT1L LTR MaLR 238 509 -2 452 312 196 3 chr12 26976312 26976613 -117305876 + L3 LINE CR1 766 1124 -453 283 314 192 12 chr12 26976878 26977050 -117305439 + L3 LINE CR1 1374 1576 -1 193 299 91 98 chr12 26977094 26977348 -117305141 - L2 LINE L2 -34 3238 2987 273 311 61 110 chr12 26977354 26977898 -117304591 + L2 LINE L2 2245 2761 -553 696 266 11 6 chr12 26980209 26980386 -117302103 - MIR SINE MIR -28 234 57 367 344 62 10 chr12 26980435 26980743 -117301746 + MARNA DNA Mariner 10 333 -253 3456 272 143 9 chr12 26980798 26982087 -117300402 - L2 LINE L2 -755 2559 1099 400 336 34 20 chr12 26982748 26982897 -117299592 + L2 LINE L2 3121 3271 -1 273 300 46 39 chr12 26985146 26985276 -117297213 - L2 LINE L2 -31 3282 3152 1490 229 39 30 chr12 26985547 26986010 -117296479 + MLT1C LTR MaLR 1 467 0 423 0 0 0 chr12 26987089 26987136 -117295353 + (CA)n Simple_repeat Simple_repeat 1 47 0 616 229 20 85 chr12 26987709 26987910 -117294579 + MER5A DNA MER1_type 2 189 0 1218 199 105 46 chr12 26988218 26988642 -117293847 + MSTB2 LTR MaLR 1 457 0 27 81 0 0 chr12 26988684 26988746 -117293743 + AT_rich Low_complexity Low_complexity 1 62 0 580 246 69 23 chr12 26989547 26989722 -117292767 + L2 LINE L2 3116 3298 -15 519 60 0 0 chr12 26989724 26989791 -117292698 + (TGGA)n Simple_repeat Simple_repeat 1 67 0 2114 105 0 11 chr12 26989916 26990233 -117292256 - AluSc SINE Alu 0 314 1 211 383 31 23 chr12 26990501 26990629 -117291860 + MIR SINE MIR 56 184 -78 234 0 0 0 chr12 26991072 26991098 -117291391 + (A)n Simple_repeat Simple_repeat 1 26 0 207 286 0 14 chr12 26991363 26991433 -117291056 + A-rich Low_complexity Low_complexity 2 70 0 4473 105 3 0 chr12 26991773 26992404 -117290085 + MER41B LTR ERV1 3 635 0 2186 102 3 3 chr12 26992405 26992698 -117289791 - AluSg SINE Alu -17 293 1 1052 264 139 20 chr12 26992708 26993381 -117289108 - L2 LINE L2 -8 3305 2540 491 281 89 55 chr12 26993435 26993670 -117288819 + MIR SINE MIR 9 251 -11 312 325 75 42 chr12 26993761 26993973 -117288516 - L2 LINE L2 -556 2758 2540 421 303 123 66 chr12 26995154 26995794 -117286695 + L2 LINE L2 1824 2500 -814 264 325 67 8 chr12 26996352 26996472 -117286017 + MER5A DNA MER1_type 7 133 -56 1066 211 0 19 chr12 26997068 26997276 -117285213 + MER58A DNA MER1_type 2 205 -19 531 208 0 0 chr12 26997349 26997474 -117285015 + (TA)n Simple_repeat Simple_repeat 1 125 0 1157 149 0 0 chr12 26997882 26998079 -117284410 - AluSx SINE Alu 0 312 116 254 61 0 0 chr12 26998079 26998112 -117284377 + MADE1 DNA Mariner 5 37 -43 915 117 0 0 chr12 26998120 26998240 -117284249 - AluSx SINE Alu -192 121 2 2319 109 0 0 chr12 26998393 26998696 -117283793 - AluSx SINE Alu -6 306 4 2221 92 7 0 chr12 26999112 26999440 -117283049 + AluSp SINE Alu 1 330 0 2628 148 144 11 chr12 26999829 27000294 -117282195 - MER1A DNA MER1_type 0 527 1 309 265 69 10 chr12 27000364 27000466 -117282023 - L2 LINE L2 -33 3280 3173 1850 270 62 8 chr12 27000625 27001236 -117281253 - L2 LINE L2 -939 2375 1732 219 235 0 0 chr12 27001313 27001364 -117281125 + CT-rich Low_complexity Low_complexity 2 52 0 289 208 26 26 chr12 27001610 27001687 -117280802 + L2 LINE L2 3188 3264 -49 209 231 19 19 chr12 27002416 27002468 -117280021 - MIR SINE MIR -56 152 101 336 83 0 0 chr12 27003073 27003121 -117279368 + (TC)n Simple_repeat Simple_repeat 1 48 0 461 331 131 38 chr12 27004647 27004991 -117277498 + L2 LINE L2 2891 3266 -6 643 319 100 24 chr12 27005071 27005482 -117277007 + L2 LINE L2 2871 3312 -1 806 284 43 30 chr12 27005517 27005820 -117276669 + MER102b DNA MER1_type 6 312 -29 237 293 0 0 chr12 27006241 27006323 -117276166 + L1M3 LINE L1 5350 5431 -740 1160 214 31 14 chr12 27006458 27006752 -117275737 + L1ME4a LINE L1 5566 5864 -257 2018 141 0 0 chr12 27008597 27008914 -117273575 - AluSx SINE Alu 0 317 1 2786 7 0 3 chr12 27010239 27010546 -117271943 + AluYa5 SINE Alu 1 306 -5 249 250 56 118 chr12 27011423 27011567 -117270922 - L2 LINE L2 -18 3295 3161 28 0 0 0 chr12 27012234 27012262 -117270227 + AT_rich Low_complexity Low_complexity 1 28 0 34 0 0 0 chr12 27014983 27015017 -117267472 + AT_rich Low_complexity Low_complexity 1 34 0 732 191 0 0 chr12 27015520 27015651 -117266838 + FLAM_A SINE Alu 1 131 -2 2386 79 0 16 chr12 27016287 27016602 -117265887 + AluSg SINE Alu 1 310 0 229 333 12 0 chr12 27018454 27018535 -117263954 + (TATG)n Simple_repeat Simple_repeat 1 82 0 312 319 44 69 chr12 27018877 27019081 -117263408 + MIR SINE MIR 3 201 -61 311 178 22 44 chr12 27019803 27019893 -117262596 + L1MC4 LINE L1 6615 6702 -1340 328 278 158 13 chr12 27020102 27020336 -117262153 + L1MC/D LINE L1 5549 5816 -1992 2286 81 0 13 chr12 27020444 27020742 -117261747 - AluY SINE Alu -17 294 1 32 43 0 0 chr12 27020938 27020984 -117261505 + AT_rich Low_complexity Low_complexity 1 46 0 432 273 39 23 chr12 27023311 27023439 -117259050 - L2 LINE L2 0 3313 3184 467 308 22 33 chr12 27024555 27024737 -117257752 - MIR SINE MIR -51 211 32 719 244 112 0 chr12 27025165 27025362 -117257127 + MIR SINE MIR 19 237 -25 192 379 57 36 chr12 27026090 27026230 -117256259 - L2 LINE L2 -3 3269 3127 2158 108 3 3 chr12 27026258 27026554 -117255935 + AluSq SINE Alu 1 296 -17 778 315 108 51 chr12 27026724 27026929 -117255560 - L2 LINE L2 -403 2911 2719 2585 65 0 0 chr12 27026929 27027236 -117255253 + AluY SINE Alu 1 307 -4 778 315 108 51 chr12 27027236 27027957 -117254532 - L2 LINE L2 -595 2719 1932 368 211 33 0 chr12 27028274 27028364 -117254125 - L1MA7 LINE L1 -448 5843 5751 1205 146 132 109 chr12 27028374 27028731 -117253758 + L1MA6 LINE L1 5927 6300 0 1510 119 13 0 chr12 27029189 27029425 -117253064 + L1MA5 LINE L1 6043 6281 -19 32 0 0 0 chr12 27030138 27030170 -117252319 + AT_rich Low_complexity Low_complexity 1 32 0 2254 123 0 0 chr12 27030215 27030523 -117251966 + AluSx SINE Alu 1 308 -4 635 210 6 34 chr12 27031177 27031353 -117251136 + L1MA10 LINE L1 6160 6330 -4 373 269 76 34 chr12 27031905 27032024 -117250465 - MIR SINE MIR -111 151 28 2291 55 0 4 chr12 27032414 27032688 -117249801 + AluY SINE Alu 26 298 -13 2446 66 0 3 chr12 27032873 27033177 -117249312 - AluY SINE Alu -4 307 5 2208 80 0 77 chr12 27033437 27033762 -117248727 - AluSx SINE Alu -10 302 3 756 213 13 13 chr12 27034567 27034717 -117247772 - FRAM SINE Alu -14 162 13 865 215 44 22 chr12 27035117 27035345 -117247144 + MIR SINE MIR 30 262 0 270 0 0 0 chr12 27038919 27038949 -117243540 + (CA)n Simple_repeat Simple_repeat 2 31 0 509 293 94 0 chr12 27039313 27039508 -117242981 + MIR SINE MIR 35 248 -14 782 274 114 52 chr12 27040100 27040694 -117241795 + L1ME3 LINE L1 5254 5884 -278 398 319 48 110 chr12 27041078 27041514 -117240975 + L2 LINE L2 2864 3272 0 850 119 0 16 chr12 27041827 27041953 -117240536 + FLAM_C SINE Alu 13 136 -7 1436 204 6 44 chr12 27041955 27042273 -117240216 + AluJo SINE Alu 1 306 -6 351 78 0 0 chr12 27043592 27043643 -117238846 + (TG)n Simple_repeat Simple_repeat 2 52 0 524 219 16 60 chr12 27043811 27043994 -117238495 + MER104 DNA MER2_type 4 178 -2 3656 143 40 47 chr12 27044404 27045144 -117237345 + L1MB7 LINE L1 5441 6175 -9 414 0 0 0 chr12 27045687 27045733 -117236756 + (TG)n Simple_repeat Simple_repeat 1 46 0 188 275 44 55 chr12 27046989 27047080 -117235409 + L2 LINE L2 2990 3079 -193 4643 75 0 90 chr12 27047792 27048522 -117233967 + MER4A LTR ERV1 1 664 0 2159 82 0 66 chr12 27048550 27048869 -117233620 - AluSg1 SINE Alu -11 298 1 270 0 0 0 chr12 27049477 27049507 -117232982 + (CA)n Simple_repeat Simple_repeat 1 30 0 1795 149 6 51 chr12 27051558 27051873 -117230616 + AluJb SINE Alu 3 303 -9 213 175 0 0 chr12 27051878 27051918 -117230571 + GA-rich Low_complexity Low_complexity 3 42 0 1181 57 6 0 chr12 27051924 27052082 -117230407 + (GGAAA)n Simple_repeat Simple_repeat 5 163 0 1052 30 8 0 chr12 27052227 27052359 -117230130 + (GGAAA)n Simple_repeat Simple_repeat 4 136 0 25 31 0 0 chr12 27052594 27052626 -117229863 + AT_rich Low_complexity Low_complexity 1 32 0 6003 106 8 20 chr12 27053216 27053550 -117228939 + L1PA15 LINE L1 5170 5506 -659 2076 125 0 0 chr12 27053550 27053858 -117228631 + AluSx SINE Alu 3 310 0 6003 106 8 20 chr12 27053858 27054517 -117227972 + L1PA15 LINE L1 5506 6152 -13 32 26 0 0 chr12 27054711 27054750 -117227739 + AT_rich Low_complexity Low_complexity 1 39 0 498 305 100 49 chr12 27054919 27055792 -117226697 + L1MC4a LINE L1 3376 4292 -1854 397 279 90 33 chr12 27055802 27056046 -117226443 + L1MC4a LINE L1 5815 6072 -1736 737 223 211 57 chr12 27056157 27056767 -117225722 + LTR50 LTR ERVL 3 793 -2 21 0 0 0 chr12 27057261 27057282 -117225207 + AT_rich Low_complexity Low_complexity 1 21 0 228 349 0 40 chr12 27058319 27058438 -117224051 + MER5B DNA MER1_type 2 127 -62 291 327 73 33 chr12 27058501 27058651 -117223838 + MIR SINE MIR 48 203 -59 1171 303 70 44 chr12 27062195 27062972 -117219517 - L2 LINE L2 -182 3131 2333 1481 282 36 39 chr12 27064842 27065430 -117217059 + L2 LINE L2 2382 2967 -347 414 244 136 99 chr12 27065579 27065800 -117216689 + MIR SINE MIR 29 257 -5 467 251 16 96 chr12 27065803 27065990 -117216499 + L2 LINE L2 3130 3301 -12 261 0 0 0 chr12 27067647 27067676 -117214813 + (CA)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chr12 27067988 27068018 -117214471 + AT_rich Low_complexity Low_complexity 1 30 0 1131 164 0 30 chr12 27068377 27068602 -117213887 - AluJb SINE Alu -16 296 1 2132 118 7 0 chr12 27068681 27068978 -117213511 - AluSx SINE Alu -13 299 1 1935 141 72 74 chr12 27069502 27069893 -117212596 + MLT1B LTR MaLR 1 390 0 1222 147 52 9 chr12 27070933 27071165 -117211324 + L1MA6 LINE L1 6052 6293 -7 514 325 120 38 chr12 27072414 27073174 -117209315 - L2 LINE L2 -2280 1034 213 514 279 16 0 chr12 27074087 27074216 -117208273 + MIR SINE MIR 1 131 -131 367 262 18 110 chr12 27074499 27074557 -117207932 + MIR SINE MIR 36 98 -164 2290 114 0 0 chr12 27074557 27074865 -117207624 - AluSg SINE Alu 0 310 3 367 262 18 110 chr12 27074865 27074970 -117207519 + MIR SINE MIR 98 184 -78 377 286 36 9 chr12 27075950 27076062 -117206427 - L2 LINE L2 -14 3299 3185 2198 104 0 29 chr12 27077018 27077327 -117205162 + AluSq SINE Alu 1 300 -13 626 236 89 108 chr12 27078357 27078616 -117203873 + MIR SINE MIR 7 260 -2 189 0 0 0 chr12 27079126 27079147 -117203342 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 183 42 0 0 chr12 27079348 27079372 -117203117 + (TG)n Simple_repeat Simple_repeat 1 24 0 299 113 19 0 chr12 27079374 27079427 -117203062 + GA-rich Low_complexity Low_complexity 2 55 0 1908 129 61 0 chr12 27079496 27079776 -117202713 + AluSx SINE Alu 1 297 -15 189 326 0 0 chr12 27080455 27080501 -117201988 - L3 LINE CR1 -11 1566 1521 417 110 0 0 chr12 27080551 27080624 -117201865 + (CA)n Simple_repeat Simple_repeat 1 73 0 197 274 113 0 chr12 27080850 27080912 -117201577 + MIR SINE MIR 82 150 -58 2142 160 47 89 chr12 27081123 27081616 -117200873 + MLT1D LTR MaLR 1 472 -33 432 200 10 11 chr12 27082124 27082228 -117200261 - L1MA4A LINE L1 -1 6274 6053 * 1582 132 26 32 chr12 27082225 27082535 -117199954 - L1MA4A LINE L1 -180 6123 5816 3987 166 8 6 chr12 27082541 27083734 -117198755 + L1MA4A LINE L1 4639 5833 -470 494 259 0 18 chr12 27083972 27084084 -117198405 + MIR3 SINE MIR 51 160 -48 194 344 0 22 chr12 27084505 27084595 -117197894 + L2 LINE L2 3226 3313 0 31 44 0 0 chr12 27085811 27085856 -117196633 + AT_rich Low_complexity Low_complexity 1 45 0 28 29 0 0 chr12 27086203 27086238 -117196251 + AT_rich Low_complexity Low_complexity 1 35 0 255 103 0 0 chr12 27086683 27086722 -117195767 + (TTATA)n Simple_repeat Simple_repeat 2 40 0 390 354 43 10 chr12 27087238 27087447 -117195042 - MIR SINE MIR -16 246 31 1722 147 41 17 chr12 27088182 27088474 -117194015 - AluJo SINE Alu -13 299 1 246 105 0 0 chr12 27088708 27088746 -117193743 - L1MA3 LINE L1 0 6305 6268 206 275 8 133 chr12 27088746 27088866 -117193623 - L3 LINE CR1 -300 1277 1173 228 250 33 17 chr12 27088871 27088931 -117193558 + L3 LINE CR1 1445 1505 -72 486 286 75 12 chr12 27088962 27089203 -117193286 + MER112 DNA MER1_type 1 256 0 2252 90 3 0 chr12 27089497 27089786 -117192703 + AluY SINE Alu 1 290 -21 1030 180 30 30 chr12 27090176 27090376 -117192113 + MER3 DNA MER1_type 1 200 -9 1074 250 0 0 chr12 27090393 27090613 -117191876 - MER58A DNA MER1_type -1 223 4 442 234 9 0 chr12 27090785 27090892 -117191597 - L1PB4 LINE L1 -2 6154 6047 261 0 0 0 chr12 27092559 27092588 -117189901 + (TG)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr12 27092765 27092785 -117189704 + (A)n Simple_repeat Simple_repeat 1 20 0 1926 147 0 10 chr12 27092789 27093089 -117189400 + AluSx SINE Alu 1 297 -15 776 265 40 16 chr12 27093222 27093471 -117189018 + MLT1L LTR MaLR 3 257 -358 509 268 16 0 chr12 27093634 27093761 -117188728 + MLT1L LTR MaLR 485 613 -2 349 325 97 34 chr12 27094255 27094461 -117188028 + MIR SINE MIR 40 258 -4 2019 294 145 25 chr12 27094497 27095282 -117187207 + L2 LINE L2 1915 2605 -708 1571 174 65 29 chr12 27095282 27095633 -117186856 - MLT1A1 LTR MaLR 0 365 2 2019 294 145 25 chr12 27095633 27096092 -117186397 + L2 LINE L2 2605 3309 -4 2256 164 0 18 chr12 27096939 27097336 -117185153 + MLT1B LTR MaLR 1 390 0 28 29 0 0 chr12 27097697 27097732 -117184757 + AT_rich Low_complexity Low_complexity 1 35 0 1818 27 0 5 chr12 27098701 27098921 -117183568 + L1PA5 LINE L1 5935 6153 -1 2023 105 51 0 chr12 27099282 27099558 -117182931 + AluSc SINE Alu 1 290 -19 239 234 0 0 chr12 27099681 27099728 -117182761 + (CA)n Simple_repeat Simple_repeat 2 48 0 698 296 74 49 chr12 27099925 27100441 -117182048 + HAL1 LINE L1 906 1449 -1058 1951 194 30 22 chr12 27100441 27100904 -117181585 + MLT1C LTR MaLR 1 467 0 698 296 74 49 chr12 27100904 27101161 -117181328 + HAL1 LINE L1 1449 1698 -809 617 69 11 0 chr12 27101458 27101545 -117180944 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 795 186 55 0 chr12 27101672 27101817 -117180672 + FAM SINE Alu 1 40 -9 407 35 0 35 chr12 27101817 27101875 -117180614 + (GGAGA)n Simple_repeat Simple_repeat 2 57 0 300 297 85 76 chr12 27101998 27102234 -117180255 + L1M2 LINE L1 896 1133 -5716 210 37 0 0 chr12 27102277 27102304 -117180185 + (GGGGA)n Simple_repeat Simple_repeat 5 31 0 744 87 11 62 chr12 27102334 27102709 -117179780 + (GGAGA)n Simple_repeat Simple_repeat 1 355 0 645 175 35 0 chr12 27102702 27102873 -117179616 + GA-rich Low_complexity Low_complexity 2 178 0 * 655 0 53 0 chr12 27104250 27104345 -117178144 + (TA)n Simple_repeat Simple_repeat 1 100 0 21 0 0 0 chr12 27104511 27104532 -117177957 + AT_rich Low_complexity Low_complexity 1 21 0 34 42 0 0 chr12 27104833 27104881 -117177608 + AT_rich Low_complexity Low_complexity 1 48 0 1824 172 3 7 chr12 27105588 27105896 -117176593 + AluJb SINE Alu 5 311 -1 445 247 215 11 chr12 27105965 27106244 -117176245 + L1ME LINE L1 5304 5650 -520 274 192 96 15 chr12 27106256 27106354 -117176135 + L1ME LINE L1 5720 5812 -309 185 384 58 17 chr12 27106464 27106636 -117175853 + L2 LINE L2 3094 3272 0 387 303 16 0 chr12 27107960 27108082 -117174407 + MIR SINE MIR 50 173 -89 719 150 18 5 chr12 27108547 27108818 -117173671 + LTR54B LTR ERV1 13 378 -132 365 54 18 0 chr12 27109139 27109195 -117173294 + LTR54 LTR ERV1 453 509 -1 402 21 0 0 chr12 27109306 27109353 -117173136 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 858 185 13 0 chr12 27109355 27109506 -117172983 - FRAM SINE Alu -30 146 1 311 206 0 0 chr12 27109510 27109573 -117172916 - AluJ/monomer SINE Alu -249 50 2 219 250 167 0 chr12 27109574 27109646 -117172843 + MIR SINE MIR 57 140 -122 786 296 153 19 chr12 27109667 27110425 -117172064 - L2 LINE L2 -6 3307 2446 451 359 68 29 chr12 27110421 27110702 -117171787 - L3 LINE CR1 -171 1406 1115 * 2238 184 21 2 chr12 27110909 27111327 -117171162 - MSTB LTR MaLR 0 426 1 230 228 9 79 chr12 27112541 27112655 -117169834 - L1ME4a LINE L1 -55 6066 5961 1782 168 62 47 chr12 27113111 27113498 -117168991 + MSTD LTR MaLR 1 393 -3 337 294 184 0 chr12 27113674 27113892 -117168597 - L1M4 LINE L1 -1559 4587 4330 403 267 158 0 chr12 27114159 27114305 -117168184 + MIR SINE MIR 84 252 -10 186 43 0 0 chr12 27114484 27114507 -117167982 + (TC)n Simple_repeat Simple_repeat 1 23 0 26 50 0 0 chr12 27114805 27114845 -117167644 + AT_rich Low_complexity Low_complexity 1 40 0 438 292 123 6 chr12 27115700 27116049 -117166440 - L1ME4a LINE L1 -119 6002 5613 21 36 0 0 chr12 27117422 27117450 -117165039 + AT_rich Low_complexity Low_complexity 1 28 0 295 292 0 0 chr12 27117821 27117886 -117164603 + L2 LINE L2 3208 3272 0 21 0 0 0 chr12 27117984 27118005 -117164484 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 27118534 27118558 -117163931 + AT_rich Low_complexity Low_complexity 1 24 0 186 71 0 0 chr12 27118591 27118619 -117163870 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 442 291 85 36 chr12 27119147 27119394 -117163095 + LTR33 LTR ERVL 105 363 -158 23 0 0 0 chr12 27119804 27119827 -117162662 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 27120091 27120113 -117162376 + AT_rich Low_complexity Low_complexity 1 22 0 404 262 53 109 chr12 27120319 27120621 -117161868 - L2 LINE L2 -63 3250 2966 326 310 106 0 chr12 27120632 27120745 -117161744 + L2 LINE L2 3139 3263 -9 1000 173 5 33 chr12 27120894 27121108 -117161381 + MER3 DNA MER1_type 1 208 -1 553 288 137 17 chr12 27121373 27121740 -117160749 - L1ME4a LINE L1 -14 6107 5785 1894 141 7 0 chr12 27121740 27122017 -117160472 - AluJb SINE Alu -33 279 1 553 288 137 17 chr12 27122017 27122320 -117160169 - L1ME4a LINE L1 -336 5785 5347 1399 193 30 4 chr12 27122465 27122735 -117159754 - AluJo SINE Alu -20 292 16 340 298 18 18 chr12 27122996 27123110 -117159379 - L2 LINE L2 -10 3303 3190 371 254 119 30 chr12 27123150 27123284 -117159205 + MER58B DNA MER1_type 196 341 0 31 0 0 0 chr12 27123315 27123346 -117159143 + AT_rich Low_complexity Low_complexity 1 31 0 1490 271 123 74 chr12 27123466 27123589 -117158900 - L2 LINE L2 0 3313 3197 189 74 0 0 chr12 27123589 27123616 -117158873 + (TA)n Simple_repeat Simple_repeat 1 27 0 1490 271 123 74 chr12 27123616 27124706 -117157783 - L2 LINE L2 -116 3197 2006 2172 123 0 0 chr12 27125819 27126129 -117156360 + AluSg SINE Alu 1 310 0 186 118 0 0 chr12 27126132 27126166 -117156323 + (TA)n Simple_repeat Simple_repeat 2 35 0 309 51 0 0 chr12 27126166 27126205 -117156284 + (CA)n Simple_repeat Simple_repeat 2 40 0 244 314 171 33 chr12 27126231 27126441 -117156048 + L3 LINE CR1 1045 1283 -294 7209 122 2 17 chr12 27126708 27127110 -117155379 + L1MA3 LINE L1 4765 5171 -1134 2283 112 0 0 chr12 27127110 27127415 -117155074 + AluSx SINE Alu 1 305 -7 7209 122 2 17 chr12 27127415 27127860 -117154629 + L1MA3 LINE L1 5171 5621 -684 2166 100 7 27 chr12 27127860 27128160 -117154329 + AluSx SINE Alu 1 294 -18 7209 122 2 17 chr12 27128160 27128876 -117153613 + L1MA3 LINE L1 5621 6305 0 206 175 50 0 chr12 27128954 27128994 -117153495 + L3 LINE CR1 1533 1574 -3 745 253 30 43 chr12 27129233 27129466 -117153023 - MIR SINE MIR -25 237 8 768 237 68 6 chr12 27129476 27129653 -117152836 + MER5A DNA MER1_type 1 188 -1 198 118 0 0 chr12 27132885 27132919 -117149570 + (TCCCC)n Simple_repeat Simple_repeat 2 35 0 2338 109 0 0 chr12 27133337 27133640 -117148849 + AluSx SINE Alu 1 303 -9 214 312 21 0 chr12 27137409 27137502 -117144987 + CT-rich Low_complexity Low_complexity 1 95 0 289 311 6 44 chr12 27137570 27137750 -117144739 + CT-rich Low_complexity Low_complexity 6 178 0 243 300 27 9 chr12 27137841 27137951 -117144538 + T-rich Low_complexity Low_complexity 3 114 0 27 0 0 0 chr12 27138205 27138232 -117144257 + AT_rich Low_complexity Low_complexity 1 27 0 1772 210 22 27 chr12 27138244 27138649 -117143840 + L1MC4 LINE L1 6690 7092 -950 1854 249 89 8 chr12 27138650 27139265 -117143224 + L1MC4 LINE L1 7238 7902 -140 23 54 0 0 chr12 27139493 27139530 -117142959 + AT_rich Low_complexity Low_complexity 1 37 0 29 60 0 0 chr12 27139744 27139794 -117142695 + AT_rich Low_complexity Low_complexity 1 50 0 2177 113 20 0 chr12 27141786 27142087 -117140402 + AluSg SINE Alu 1 307 -3 28 0 0 0 chr12 27142087 27142115 -117140374 + AT_rich Low_complexity Low_complexity 1 28 0 1584 198 13 20 chr12 27143622 27143920 -117138569 + AluJo SINE Alu 1 296 -16 1147 48 0 28 chr12 27144771 27144916 -117137573 + AluY SINE Alu 1 141 -170 1512 75 0 20 chr12 27144916 27145117 -117137372 + AluY SINE Alu 109 305 -6 1007 187 17 31 chr12 27145364 27145658 -117136831 + SVA Other Other 432 721 -665 27 0 0 0 chr12 27145750 27145777 -117136712 + AT_rich Low_complexity Low_complexity 1 27 0 1860 156 9 22 chr12 27146297 27146612 -117135877 + AluJb SINE Alu 1 311 -1 202 191 48 0 chr12 27147476 27147518 -117134971 + GA-rich Low_complexity Low_complexity 5 48 0 26 30 0 0 chr12 27147525 27147558 -117134931 + AT_rich Low_complexity Low_complexity 1 33 0 305 131 33 0 chr12 27148493 27148554 -117133935 + Alu SINE Alu 238 300 0 370 325 82 19 chr12 27149595 27149801 -117132688 + L2 LINE L2 2543 2761 -553 261 57 0 0 chr12 27150527 27150562 -117131927 + (CA)n Simple_repeat Simple_repeat 1 35 0 234 274 116 0 chr12 27151060 27151155 -117131334 + L1ME3A LINE L1 44 149 -5970 539 320 96 58 chr12 27151358 27151476 -117131013 + L1ME3A LINE L1 561 673 -5446 3362 148 55 6 chr12 27151476 27152098 -117130391 + L1MC2 LINE L1 5680 6331 -13 539 320 96 58 chr12 27152098 27152532 -117129957 + L1ME3A LINE L1 673 1134 -4985 235 236 42 0 chr12 27152573 27152645 -117129844 + HAL1 LINE L1 1500 1574 -933 947 264 135 70 chr12 27152675 27153091 -117129398 + L1ME3A LINE L1 2411 2799 -3330 2381 68 0 0 chr12 27153091 27153409 -117129080 - AluY SINE Alu 0 318 1 947 264 135 70 chr12 27153409 27153692 -117128797 + L1ME3A LINE L1 2799 3062 -3067 2579 139 9 36 chr12 27153692 27154138 -117128351 + Tigger2a DNA MER2_type 1 434 0 947 264 135 70 chr12 27154138 27154617 -117127872 + L1ME3A LINE L1 3062 3509 -2620 1032 146 0 0 chr12 27154617 27154795 -117127694 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 947 264 135 70 chr12 27154795 27155247 -117127242 + L1ME3A LINE L1 3509 4150 -1979 352 278 91 28 chr12 27155393 27155569 -117126920 + L1ME3A LINE L1 5349 5535 -2443 422 265 118 84 chr12 27155608 27156023 -117126466 + L1ME3A LINE L1 5617 6045 -108 219 328 51 79 chr12 27156035 27156212 -117126277 + L3 LINE CR1 1405 1576 -1 331 270 181 42 chr12 27156292 27156629 -117125860 + MLT1L LTR MaLR 7 390 -225 482 327 73 0 chr12 27156818 27156983 -117125506 - MIR SINE MIR -70 192 16 244 196 22 0 chr12 27159582 27159628 -117122861 + MER81 DNA DNA 3 49 -65 2296 165 56 0 chr12 27160127 27160623 -117121866 + MER44D DNA MER2_type 15 605 0 6481 94 18 12 chr12 27161459 27162456 -117120033 + L1MA3 LINE L1 5303 6305 0 223 182 23 0 chr12 27162640 27162684 -117119805 + (CATA)n Simple_repeat Simple_repeat 2 46 0 1966 143 0 10 chr12 27162929 27163237 -117119252 - AluJb SINE Alu -7 305 1 394 242 62 16 chr12 27164302 27164430 -117118059 + MIR SINE MIR 10 143 -119 2372 45 0 0 chr12 27164611 27164901 -117117588 + L1PA7 LINE L1 5859 6148 -6 196 288 96 56 chr12 27165674 27165799 -117116690 - L2 LINE L2 -2 3270 3141 500 215 33 0 chr12 27165926 27166047 -117116442 - MER94 DNA DNA -7 127 3 1719 178 7 3 chr12 27166280 27166572 -117115917 + AluJo SINE Alu 4 296 -16 334 185 11 11 chr12 27166643 27166735 -117115754 + CT-rich Low_complexity Low_complexity 1 92 0 244 253 55 33 chr12 27166840 27166931 -117115558 - L2 LINE L2 -44 3228 3136 206 220 40 0 chr12 27167283 27167333 -117115156 + GA-rich Low_complexity Low_complexity 4 55 0 183 204 0 0 chr12 27167350 27167399 -117115090 + GA-rich Low_complexity Low_complexity 2 50 0 24 53 0 0 chr12 27168368 27168406 -117114083 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 27168709 27168730 -117113759 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 27170106 27170128 -117112361 + AT_rich Low_complexity Low_complexity 1 22 0 2070 148 3 0 chr12 27171577 27171882 -117110607 + AluSx SINE Alu 2 307 -5 22 35 0 0 chr12 27172299 27172328 -117110161 + AT_rich Low_complexity Low_complexity 1 29 0 655 286 111 47 chr12 27173097 27173439 -117109050 + L2 LINE L2 2941 3304 -9 22 56 0 0 chr12 27173628 27173664 -117108825 + AT_rich Low_complexity Low_complexity 1 36 0 552 211 23 103 chr12 27175273 27175534 -117106955 - L1ME2 LINE L1 -1 6163 5924 1155 320 181 30 chr12 27175544 27176430 -117106059 + L3 LINE CR1 534 1552 -25 4508 35 2 0 chr12 27176443 27176984 -117105505 - L1PA4 LINE L1 0 6155 5614 494 116 0 42 chr12 27177265 27177360 -117105129 + L1PA10 LINE L1 6078 6168 0 235 331 69 29 chr12 27178460 27178635 -117103854 + MIR SINE MIR 47 228 -34 22 35 0 0 chr12 27179177 27179206 -117103283 + AT_rich Low_complexity Low_complexity 1 29 0 1429 235 67 0 chr12 27179234 27179579 -117102910 + MSTD LTR MaLR 1 368 -28 358 149 62 40 chr12 27179802 27179911 -117102578 + LTR16A LTR ERVL 1 109 -341 1747 176 8 41 chr12 27179912 27180275 -117102214 + MLT1A1 LTR MaLR 15 365 0 3134 185 32 112 chr12 27180275 27181242 -117101247 + MLT1A1-int LTR MaLR 1 887 -848 914 143 6 40 chr12 27181346 27181408 -117101081 + MLT1A1 LTR MaLR 197 260 -105 2725 94 3 0 chr12 27181408 27181771 -117100718 - THE1B LTR MaLR 0 364 1 914 143 6 40 chr12 27181771 27181883 -117100606 + MLT1A1 LTR MaLR 260 365 0 840 247 148 0 chr12 27181889 27182172 -117100317 + LTR16A LTR ERVL 126 450 0 222 191 0 0 chr12 27182916 27182963 -117099526 + T-rich Low_complexity Low_complexity 1 47 0 186 328 0 31 chr12 27183172 27183236 -117099253 - MIR3 SINE MIR -24 184 123 1261 212 62 58 chr12 27186043 27186165 -117096324 - L1MC4 LINE L1 0 8042 7922 348 43 0 0 chr12 27186165 27186211 -117096278 + (CA)n Simple_repeat Simple_repeat 1 46 0 1261 212 62 58 chr12 27186211 27186540 -117095949 - L1MC4 LINE L1 -120 7922 7589 247 222 200 0 chr12 27186566 27186656 -117095833 + L2 LINE L2 2667 2774 -540 617 37 0 12 chr12 27186735 27186816 -117095673 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 186 43 0 0 chr12 27186836 27186859 -117095630 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 409 294 9 0 chr12 27186921 27187030 -117095459 + L2 LINE L2 3204 3313 0 2129 151 16 16 chr12 27187206 27187591 -117094898 + L1MC1 LINE L1 5940 6324 -9 381 315 19 56 chr12 27188085 27188301 -117094188 - HAL1b LINE L1 -1094 254 47 661 323 74 15 chr12 27189486 27189889 -117092600 + LTR16A LTR ERVL 17 443 -7 445 324 91 43 chr12 27189922 27190132 -117092357 - MIR SINE MIR -30 232 13 2342 99 10 0 chr12 27190210 27190512 -117091977 - AluSc SINE Alu -4 305 1 229 35 0 0 chr12 27190609 27190638 -117091851 + Alu SINE Alu 176 204 -95 1629 211 87 24 chr12 27191603 27192019 -117090470 + MLT1F1 LTR MaLR 126 567 0 2541 65 0 0 chr12 27192305 27192615 -117089874 + AluY SINE Alu 1 310 -1 338 243 243 13 chr12 27192898 27193050 -117089439 + MIR SINE MIR 74 260 -2 27 49 0 0 chr12 27195180 27195221 -117087268 + AT_rich Low_complexity Low_complexity 1 41 0 441 242 88 46 chr12 27195620 27195821 -117086668 + MIR SINE MIR 3 206 -56 619 266 64 16 chr12 27196974 27197276 -117085213 - L2 LINE L2 -264 3049 2731 476 210 281 0 chr12 27199219 27199386 -117083103 + MIR SINE MIR 36 249 -13 1793 176 10 3 chr12 27199645 27199941 -117082548 - AluJo SINE Alu -12 300 3 23 54 0 0 chr12 27201660 27201697 -117080792 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr12 27201709 27201732 -117080757 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 27201758 27201779 -117080710 + AT_rich Low_complexity Low_complexity 1 21 0 1070 223 173 60 chr12 27202332 27202817 -117079672 + MLT1F LTR MaLR 3 542 0 337 55 55 0 chr12 27203081 27203136 -117079353 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 23 33 0 0 chr12 27204683 27204713 -117077776 + AT_rich Low_complexity Low_complexity 1 30 0 37 0 0 21 chr12 27205799 27205811 -117076678 + AT_rich Low_complexity Low_complexity 1 12 -35 1708 168 14 14 chr12 27205811 27206103 -117076386 + AluJb SINE Alu 1 292 -20 37 0 0 21 chr12 27206103 27206138 -117076351 + AT_rich Low_complexity Low_complexity 12 47 0 244 259 32 55 chr12 27206200 27206420 -117076069 + L1MEd LINE L1 1024 1238 -4881 42503 35 2 1 chr12 27206530 27212682 -117069807 + L1PA3 LINE L1 1 6155 0 241 301 65 8 chr12 27212726 27212849 -117069640 + HAL1 LINE L1 1494 1623 -884 2396 88 0 0 chr12 27212852 27213148 -117069341 + AluSx SINE Alu 5 300 -12 2285 120 0 0 chr12 27213167 27213466 -117069023 + AluSx SINE Alu 1 299 -13 309 357 93 0 chr12 27213468 27213608 -117068881 + HAL1 LINE L1 1617 1769 -738 23 54 0 0 chr12 27213726 27213763 -117068726 + AT_rich Low_complexity Low_complexity 1 37 0 1924 160 3 3 chr12 27214290 27214590 -117067899 + AluJb SINE Alu 1 300 -12 400 264 47 42 chr12 27214666 27214859 -117067630 + L1MEd LINE L1 2199 2392 -3737 219 265 45 114 chr12 27214933 27215065 -117067424 + L2 LINE L2 3146 3268 -4 209 218 23 46 chr12 27216645 27216732 -117065757 + T-rich Low_complexity Low_complexity 6 90 0 24 53 0 0 chr12 27217365 27217403 -117065086 + AT_rich Low_complexity Low_complexity 1 38 0 1001 264 37 48 chr12 27217604 27217983 -117064506 - L1ME3A LINE L1 -275 5895 5521 322 329 160 9 chr12 27218088 27218307 -117064182 + MIR SINE MIR 9 260 -2 22 35 0 0 chr12 27219659 27219688 -117062801 + AT_rich Low_complexity Low_complexity 1 29 0 1035 206 17 0 chr12 27219837 27220017 -117062472 + MER5A DNA MER1_type 2 184 -5 2795 201 52 7 chr12 27220108 27220680 -117061809 - MER82 DNA MER2_type 0 653 56 572 229 24 36 chr12 27221243 27221409 -117061080 - MER5B DNA MER1_type -14 164 1 1846 184 0 3 chr12 27222288 27222597 -117059892 + AluJb SINE Alu 3 310 -2 883 286 130 38 chr12 27222638 27223085 -117059404 + L2 LINE L2 2824 3311 -2 32 57 0 0 chr12 27223128 27223181 -117059308 + AT_rich Low_complexity Low_complexity 1 53 0 27 0 0 0 chr12 27223365 27223392 -117059097 + AT_rich Low_complexity Low_complexity 1 27 0 1684 176 3 17 chr12 27225016 27225312 -117057177 - AluJb SINE Alu -20 292 1 235 235 0 24 chr12 27225476 27225561 -117056928 + GA-rich Low_complexity Low_complexity 1 83 0 777 189 18 0 chr12 27225925 27226094 -117056395 + L1MA9 LINE L1 6106 6277 -35 1990 150 10 13 chr12 27226107 27226420 -117056069 + AluJb SINE Alu 1 312 0 241 167 0 30 chr12 27226421 27226487 -117056002 + GA-rich Low_complexity Low_complexity 4 67 0 776 201 43 5 chr12 27229192 27229376 -117053113 + MER20 DNA MER1_type 1 191 -28 1179 153 30 0 chr12 27230393 27230596 -117051893 + MER2 DNA MER2_type 2 210 -135 358 323 19 37 chr12 27230828 27230989 -117051500 - MIR SINE MIR -46 216 59 2679 153 91 6 chr12 27231052 27231582 -117050907 + MER90 LTR ERV1 1 575 0 1895 126 59 0 chr12 27234499 27234820 -117047669 + AluSx SINE Alu 1 337 0 727 227 34 17 chr12 27235269 27235549 -117046940 + L1ME2 LINE L1 5722 6010 -154 289 347 32 8 chr12 27236308 27236432 -117046057 + MIR3 SINE MIR 31 157 -51 21 0 0 0 chr12 27236887 27236908 -117045581 + AT_rich Low_complexity Low_complexity 1 21 0 268 327 88 54 chr12 27236938 27237235 -117045254 - L2 LINE L2 -2 3311 3005 445 286 83 26 chr12 27237358 27237550 -117044939 - MIR SINE MIR -34 228 26 2206 88 0 17 chr12 27239395 27239690 -117042799 - AluSx SINE Alu 0 312 23 238 359 58 29 chr12 27240288 27240391 -117042098 + L2 LINE L2 3150 3255 -17 721 218 23 17 chr12 27240413 27240587 -117041902 - MER20 DNA MER1_type 0 219 45 415 254 9 35 chr12 27240736 27240850 -117041639 - L2 LINE L2 0 3272 3162 391 337 101 0 chr12 27241641 27241819 -117040670 - MIR SINE MIR -10 252 57 22 0 0 0 chr12 27241933 27241955 -117040534 + AT_rich Low_complexity Low_complexity 1 22 0 584 141 39 47 chr12 27243124 27243252 -117039237 + MER3 DNA MER1_type 82 208 -1 212 281 82 89 chr12 27244083 27244218 -117038271 + L2 LINE L2 3138 3271 -1 1976 113 18 7 chr12 27244499 27244802 -117037687 - AluSq SINE Alu 0 306 1 6831 121 3 8 chr12 27244827 27245885 -117036604 + L1MA3 LINE L1 5254 6305 0 1618 159 62 0 chr12 27246929 27247205 -117035284 + AluSx SINE Alu 1 293 -19 303 270 131 36 chr12 27247231 27247368 -117035121 - MIR SINE MIR -22 240 91 484 276 196 18 chr12 27248568 27248843 -117033646 - L2 LINE L2 -23 3290 2967 330 291 145 0 chr12 27249074 27249191 -117033298 + MIR SINE MIR 56 189 -73 369 0 0 0 chr12 27249607 27249648 -117032841 + (CA)n Simple_repeat Simple_repeat 2 42 0 534 255 12 43 chr12 27249726 27249887 -117032602 + MER20B DNA MER1_type 1 156 -627 23 0 0 0 chr12 27250746 27250769 -117031720 + AT_rich Low_complexity Low_complexity 1 23 0 777 193 82 30 chr12 27251396 27251629 -117030860 + MER20B DNA MER1_type 539 783 0 258 291 8 30 chr12 27254532 27254666 -117027823 + L1MC4 LINE L1 5825 5955 -1853 207 0 0 0 chr12 27255045 27255068 -117027421 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1336 117 44 0 chr12 27255075 27255280 -117027209 - L1PA8A LINE L1 -27 6104 5891 303 280 32 11 chr12 27255491 27255584 -117026905 + L1MC4 LINE L1 6606 6700 -1342 2029 125 20 14 chr12 27255585 27255880 -117026609 - AluSx SINE Alu -15 297 1 1419 46 0 0 chr12 27256580 27256754 -117025735 - L1PA4 LINE L1 -5 6150 5977 600 161 0 0 chr12 27258760 27258853 -117023636 - FLAM_A SINE Alu -16 126 34 246 331 25 8 chr12 27262816 27262937 -117019552 - L3 LINE CR1 -4 1573 1451 1124 147 0 0 chr12 27265877 27266067 -117016422 - L1PA13 LINE L1 -853 5293 5104 * 6238 81 14 7 chr12 27266065 27266938 -117015551 + L1PA13 LINE L1 5274 6152 -11 189 107 0 0 chr12 27266994 27267022 -117015467 + (GAAAA)n Simple_repeat Simple_repeat 4 31 0 1571 177 21 25 chr12 27268487 27268770 -117013719 + AluJo SINE Alu 1 282 -30 25 0 0 0 chr12 27268781 27268806 -117013683 + AT_rich Low_complexity Low_complexity 1 25 0 271 283 0 40 chr12 27269508 27269607 -117012882 - MIR SINE MIR -51 211 117 293 262 131 35 chr12 27269705 27269850 -117012639 - L3 LINE CR1 -206 1371 1213 2097 109 61 0 chr12 27270022 27270316 -117012173 + AluSx SINE Alu 1 312 0 269 274 38 0 chr12 27270920 27271026 -117011463 + (TA)n Simple_repeat Simple_repeat 1 110 0 180 341 165 18 chr12 27271059 27271223 -117011266 - MIR SINE MIR -57 205 18 2287 112 0 3 chr12 27271969 27272274 -117010215 - AluSq SINE Alu -9 304 1 231 210 48 0 chr12 27272284 27272346 -117010143 - MER112 DNA MER1_type -48 212 148 264 214 53 0 chr12 27272347 27272478 -117010011 + GA-rich Low_complexity Low_complexity 3 140 0 332 209 52 134 chr12 27272482 27272654 -117009835 - MER112 DNA MER1_type -99 161 4 607 319 168 53 chr12 27273264 27273539 -117008950 + L3 LINE CR1 649 891 -686 569 191 23 15 chr12 27273539 27273670 -117008819 - MER94 DNA DNA 0 134 3 607 319 168 53 chr12 27273670 27274179 -117008310 + L3 LINE CR1 891 1523 -54 2178 114 13 0 chr12 27274219 27274525 -117007964 - AluSg SINE Alu 0 310 1 215 59 0 29 chr12 27274977 27275011 -117007478 + (CA)n Simple_repeat Simple_repeat 2 34 0 561 324 116 0 chr12 27275023 27275239 -117007250 - MIR SINE MIR -10 252 12 3355 209 71 20 chr12 27275892 27276779 -117005710 + L1ME1 LINE L1 5233 6161 -5 660 218 63 63 chr12 27277159 27277411 -117005078 + L1MC5 LINE L1 6787 7038 -923 216 67 0 0 chr12 27278644 27278674 -117003815 + (TG)n Simple_repeat Simple_repeat 1 30 0 1016 210 149 86 chr12 27279090 27279354 -117003135 + L1ME3 LINE L1 5618 5923 -239 2405 143 56 23 chr12 27279354 27279505 -117002984 + L1MB7 LINE L1 5669 5814 -370 2204 108 7 0 chr12 27279505 27279801 -117002688 + AluSx SINE Alu 1 298 -14 2405 143 56 23 chr12 27279801 27280133 -117002356 + L1MB7 LINE L1 5814 6168 -16 1016 210 149 86 chr12 27280133 27280310 -117002179 + L1ME3 LINE L1 5923 6087 -75 213 235 0 0 chr12 27280311 27280362 -117002127 + (TA)n Simple_repeat Simple_repeat 1 51 0 200 333 31 10 chr12 27280442 27280538 -117001951 + MIR SINE MIR 151 248 -14 180 267 44 0 chr12 27280530 27280575 -117001914 + L2 LINE L2 2406 2452 -862 * 2314 70 7 0 chr12 27280583 27280887 -117001602 + AluSp SINE Alu 1 306 0 1205 275 51 34 chr12 27280887 27281520 -117000969 + L2 LINE L2 2488 3148 -165 293 180 0 0 chr12 27281520 27281570 -117000919 + L2 LINE L2 3263 3312 -1 294 29 0 0 chr12 27283164 27283199 -116999290 + (CA)n Simple_repeat Simple_repeat 2 36 0 243 0 0 0 chr12 27283795 27283822 -116998667 + (TG)n Simple_repeat Simple_repeat 2 28 0 209 83 28 0 chr12 27284162 27284198 -116998291 + (TTCC)n Simple_repeat Simple_repeat 1 37 0 311 232 14 0 chr12 27284389 27284458 -116998031 - MER116 DNA Mariner -7 73 4 2229 127 0 0 chr12 27285023 27285331 -116997158 - AluSx SINE Alu -4 308 1 535 125 0 0 chr12 27285399 27285479 -116997010 - MADE1 DNA Mariner 0 80 1 320 305 48 0 chr12 27287515 27287620 -116994869 + MER94 DNA DNA 17 126 -8 355 239 145 14 chr12 27287811 27287949 -116994540 - MIR SINE MIR -31 231 76 291 264 92 31 chr12 27288089 27288252 -116994237 + Charlie7 DNA MER1_type 2434 2606 -6 358 95 14 40 chr12 27288253 27288327 -116994162 + L1PA13 LINE L1 6090 6161 -2 2248 89 7 0 chr12 27288560 27288852 -116993637 + AluSg SINE Alu 1 294 -16 231 336 17 17 chr12 27289061 27289177 -116993312 - L3b LINE CR1 -166 1417 1302 4178 73 11 0 chr12 27289214 27289762 -116992727 + MER41A LTR ERV1 1 554 0 4179 126 33 35 chr12 27289848 27290565 -116991924 + MER41A-int LTR ERV1 1 623 -5323 * 12763 113 27 25 chr12 27290551 27293762 -116988727 + MER41A-int LTR ERV1 1080 5944 -2 3858 91 27 24 chr12 27293762 27294188 -116988301 + MER41A LTR ERV1 1 431 -123 2230 123 0 0 chr12 27294188 27294488 -116988001 - AluSx SINE Alu -12 300 1 3858 91 27 24 chr12 27294488 27294613 -116987876 + MER41A LTR ERV1 431 554 0 390 208 0 0 chr12 27294615 27294687 -116987802 + Tigger5 DNA MER2_type 2252 2323 0 416 339 0 0 chr12 27295978 27296090 -116986399 + L2 LINE L2 3161 3272 0 1109 186 88 47 chr12 27296905 27297223 -116985266 + MER2 DNA MER2_type 2 332 -13 386 297 47 47 chr12 27297281 27297473 -116985016 - MIR SINE MIR -27 235 44 813 196 22 16 chr12 27297525 27297709 -116984780 + MER105 DNA DNA 18 202 -2 257 196 0 0 chr12 27297813 27297859 -116984630 - Charlie4 DNA MER1_type -37 1924 1879 2530 234 40 39 chr12 27297887 27298488 -116984001 + L1M4 LINE L1 1464 2063 -5044 1735 179 3 14 chr12 27298488 27298779 -116983710 + AluJo SINE Alu 5 292 -20 2530 234 40 39 chr12 27298779 27299772 -116982717 + L1M4 LINE L1 2063 2929 -4178 245 278 0 0 chr12 27299890 27299962 -116982527 + L1M4 LINE L1 2823 2894 -4214 1019 167 56 35 chr12 27299965 27300253 -116982236 + L1MA9 LINE L1 6015 6308 -4 207 0 0 0 chr12 27300277 27300300 -116982189 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 281 226 0 0 chr12 27300347 27300400 -116982089 - Charlie4 DNA MER1_type -1869 92 40 2082 230 5 24 chr12 27300909 27301527 -116980962 + L1M4 LINE L1 5684 6289 -817 518 42 0 14 chr12 27301530 27301601 -116980888 + L1PA7 LINE L1 6082 6151 -3 302 200 0 5 chr12 27301675 27301764 -116980725 + L1M LINE L1 6262 6348 -945 276 294 91 16 chr12 27302398 27302585 -116979904 - L1ME LINE L1 -548 5573 5373 4076 188 32 4 chr12 27302602 27303765 -116978724 - L1MB7 LINE L1 -9 6175 4980 460 273 117 43 chr12 27304433 27304715 -116977774 - L1ME4a LINE L1 -2 6119 5817 661 73 0 91 chr12 27305091 27305201 -116977288 + L1PA7 LINE L1 6030 6129 -25 * 1565 35 0 0 chr12 27305197 27305396 -116977093 + L1HS LINE L1 5953 6151 -4 231 114 0 0 chr12 27305398 27305442 -116977047 + (A)n Simple_repeat Simple_repeat 1 44 0 234 0 0 0 chr12 27305544 27305570 -116976919 + (A)n Simple_repeat Simple_repeat 1 26 0 439 81 0 0 chr12 27305599 27305661 -116976828 - Charlie1 DNA MER1_type -1 2760 2699 288 0 0 0 chr12 27305967 27305999 -116976490 + (CA)n Simple_repeat Simple_repeat 2 33 0 26 0 0 0 chr12 27306639 27306665 -116975824 + AT_rich Low_complexity Low_complexity 1 26 0 484 231 4 40 chr12 27307474 27307610 -116974879 + MIR SINE MIR 14 145 -63 230 220 144 42 chr12 27307611 27307729 -116974760 + MLT1J LTR MaLR 1 130 -381 958 259 88 27 chr12 27307745 27308120 -116974369 - MLT1C LTR MaLR -2 465 68 229 347 0 31 chr12 27308277 27308375 -116974114 + MLT1J1 LTR MaLR 189 283 -163 * 243 301 58 19 chr12 27308366 27308469 -116974020 + MLT1J LTR MaLR 378 484 -27 2339 87 3 0 chr12 27308487 27308785 -116973704 - AluY SINE Alu -12 299 1 432 205 27 18 chr12 27308859 27308971 -116973518 + MIR SINE MIR 147 259 -3 475 81 106 0 chr12 27309359 27309519 -116972970 + (TA)n Simple_repeat Simple_repeat 2 178 0 180 324 0 0 chr12 27309519 27309590 -116972899 + L2 LINE L2 3146 3216 -97 2635 98 0 0 chr12 27309709 27310076 -116972413 - L1PA8 LINE L1 0 6172 5806 261 0 0 0 chr12 27310954 27310983 -116971506 + (T)n Simple_repeat Simple_repeat 1 29 0 829 179 0 0 chr12 27311331 27311454 -116971035 + AluJb SINE Alu 3 125 -187 417 347 0 0 chr12 27311484 27311608 -116970881 - L2 LINE L2 0 3272 3149 499 279 94 16 chr12 27311869 27312123 -116970366 + LTR16C LTR ERVL 209 482 -9 227 291 50 101 chr12 27312220 27312478 -116970011 + L3 LINE CR1 689 933 -644 2947 106 66 0 chr12 27312519 27312903 -116969586 + MLT2A2 LTR ERVL 1 417 -36 198 103 0 0 chr12 27312903 27312932 -116969557 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 2947 106 66 0 chr12 27312932 27312972 -116969517 + MLT2A2 LTR ERVL 417 453 0 42444 71 7 2 chr12 27312972 27318603 -116963886 + HERVL-A2 LTR ERVL 1 5654 0 2335 58 130 30 chr12 27318603 27318964 -116963525 + MLT2A2 LTR ERVL 1 397 -56 393 22 0 0 chr12 27318965 27319011 -116963478 + (TA)n Simple_repeat Simple_repeat 1 46 0 372 22 0 0 chr12 27319010 27319055 -116963434 + (GA)n Simple_repeat Simple_repeat 2 46 0 * 234 84 0 229 chr12 27319089 27319172 -116963317 + MLT2A1 LTR ERVL 386 440 -4 352 348 23 63 chr12 27319211 27319513 -116962976 + L3 LINE CR1 1050 1339 -238 613 321 75 8 chr12 27319525 27319765 -116962724 + MIR SINE MIR 1 256 -6 1142 229 28 31 chr12 27320659 27321012 -116961477 + L1MD3 LINE L1 7479 7830 -165 514 260 74 1 chr12 27321009 27321221 -116961268 + L1MD3 LINE L1 7562 7974 0 * 957 9 0 0 chr12 27321228 27321338 -116961151 + (TCTCCC)n Simple_repeat Simple_repeat 5 114 0 4941 60 14 130 chr12 27321344 27322268 -116960221 + SVA Other Other 50 866 -520 6064 68 48 40 chr12 27322297 27323442 -116959047 + SVA Other Other 433 1386 0 217 306 31 20 chr12 27323642 27323740 -116958749 + MIR3 SINE MIR 102 200 -8 2413 77 10 0 chr12 27324895 27325194 -116957295 - AluSp SINE Alu -11 302 1 210 307 11 57 chr12 27325327 27325415 -116957074 - MIR SINE MIR -84 124 41 417 277 21 25 chr12 27325573 27325815 -116956674 - L1MEd LINE L1 -4908 1211 971 31 0 0 0 chr12 27326463 27326494 -116955995 + AT_rich Low_complexity Low_complexity 1 31 0 288 0 0 0 chr12 27327559 27327591 -116954898 + (CA)n Simple_repeat Simple_repeat 2 33 0 477 291 158 0 chr12 27327774 27327932 -116954557 + MIR SINE MIR 46 228 -34 293 286 12 12 chr12 27327964 27328048 -116954441 + L2 LINE L2 3188 3271 -1 325 287 148 50 chr12 27329313 27329515 -116952974 - L3 LINE CR1 -1 1576 1355 447 290 35 41 chr12 27329518 27329687 -116952802 + L2 LINE L2 3146 3313 0 795 328 64 5 chr12 27329767 27330157 -116952332 - L3 LINE CR1 -346 1231 819 225 239 130 109 chr12 27330292 27330430 -116952059 + MER5B DNA MER1_type 1 141 -37 298 350 17 8 chr12 27330557 27330674 -116951815 + L2 LINE L2 3154 3271 -1 208 333 232 17 chr12 27331636 27331813 -116950676 - MIR SINE MIR 0 262 48 277 284 85 10 chr12 27332132 27332451 -116950038 + L1P LINE L1 4870 5205 -941 1984 138 3 3 chr12 27332676 27332972 -116949517 + AluSx SINE Alu 3 298 -14 218 393 86 26 chr12 27333001 27333118 -116949371 + MER91A DNA MER1_type 72 195 -1 203 315 19 0 chr12 27333118 27333163 -116949326 + MER91A DNA MER1_type 144 189 -1 709 263 70 76 chr12 27333208 27333720 -116948769 + L1ME3A LINE L1 5257 5765 -405 2169 104 0 24 chr12 27333720 27334018 -116948471 + AluSx SINE Alu 1 291 -21 709 263 70 76 chr12 27334018 27334204 -116948285 + L1ME3A LINE L1 5765 5951 -219 2394 104 0 0 chr12 27334655 27334963 -116947526 - AluSq SINE Alu -4 309 2 201 175 228 0 chr12 27335217 27335274 -116947215 + MIR SINE MIR 76 145 -117 21 57 0 0 chr12 27335944 27335979 -116946510 + AT_rich Low_complexity Low_complexity 1 35 0 715 185 19 52 chr12 27336968 27337179 -116945310 - L1ME LINE L1 -5809 261 58 685 266 134 75 chr12 27337236 27337454 -116945035 + L1MEd LINE L1 662 866 -5253 732 177 0 16 chr12 27337454 27337578 -116944911 + FLAM_A SINE Alu 1 122 -11 685 266 134 75 chr12 27337578 27337784 -116944705 + L1MEd LINE L1 866 1111 -5008 405 245 82 0 chr12 27338721 27338819 -116943670 + MIR SINE MIR 37 142 -120 1685 187 6 19 chr12 27338990 27339306 -116943183 + AluJo SINE Alu 1 312 0 752 176 0 0 chr12 27339341 27339460 -116943029 + FLAM_C SINE Alu 4 122 -21 474 146 0 0 chr12 27339519 27339629 -116942860 + (TA)n Simple_repeat Simple_repeat 2 111 0 344 252 154 24 chr12 27339632 27339969 -116942520 + L1MEd LINE L1 2317 2697 -3432 185 233 23 0 chr12 27339972 27340015 -116942474 - L3 LINE CR1 -377 1200 1157 207 310 40 30 chr12 27340016 27340116 -116942373 - L3 LINE CR1 -567 1010 910 338 336 42 0 chr12 27340237 27340356 -116942133 + L2 LINE L2 3145 3268 -4 520 101 0 0 chr12 27340914 27341003 -116941486 + L1MA4 LINE L1 6211 6299 -1 1877 149 3 0 chr12 27341692 27342007 -116940482 - AluJb SINE Alu 0 316 1 21 57 0 0 chr12 27342113 27342148 -116940341 + AT_rich Low_complexity Low_complexity 1 35 0 413 237 141 0 chr12 27342170 27342305 -116940184 + MIR SINE MIR 65 218 -44 285 213 16 0 chr12 27342508 27342569 -116939920 - L2 LINE L2 0 3313 3252 983 295 43 43 chr12 27342657 27343046 -116939443 - L2 LINE L2 -335 2978 2592 1056 168 6 0 chr12 27343639 27343812 -116938677 - AluJo SINE Alu -138 174 1 1648 123 0 0 chr12 27343960 27344179 -116938310 + AluSg/x SINE Alu 80 298 -12 490 273 83 37 chr12 27345079 27345295 -116937194 + MLT1K LTR MaLR 339 564 -24 591 205 79 0 chr12 27345413 27345540 -116936949 - L2 LINE L2 0 3313 3177 852 154 0 0 chr12 27347808 27347938 -116934551 - FLAM_C SINE Alu -3 130 1 216 0 0 0 chr12 27348009 27348033 -116934456 + (A)n Simple_repeat Simple_repeat 1 24 0 1321 120 0 5 chr12 27348305 27348497 -116933992 + AluY SINE Alu 5 195 -116 821 71 0 0 chr12 27348524 27348637 -116933852 + AluY SINE Alu 147 259 -52 1439 100 0 9 chr12 27348639 27348849 -116933640 + AluY SINE Alu 97 304 -7 2215 105 7 3 chr12 27348854 27349159 -116933330 + AluSx SINE Alu 1 306 -6 2391 58 0 7 chr12 27349268 27349561 -116932928 + AluY SINE Alu 1 291 -20 23 54 0 0 chr12 27350062 27350099 -116932390 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr12 27350207 27350244 -116932245 + AT_rich Low_complexity Low_complexity 1 37 0 261 253 10 30 chr12 27351231 27351330 -116931159 + MLT1K LTR MaLR 490 586 -2 31 0 0 0 chr12 27351404 27351435 -116931054 + AT_rich Low_complexity Low_complexity 1 31 0 246 252 26 113 chr12 27351456 27351607 -116930882 + L3b LINE CR1 1268 1405 -178 1901 145 28 3 chr12 27352035 27352318 -116930171 + AluSx SINE Alu 7 296 -16 2469 66 3 0 chr12 27352785 27353088 -116929401 + AluY SINE Alu 1 304 -7 463 304 84 14 chr12 27353254 27353468 -116929021 - MIR SINE MIR -27 235 7 437 309 33 132 chr12 27353476 27353904 -116928585 - L2 LINE L2 -1 3271 2895 2073 78 0 7 chr12 27353904 27354175 -116928314 + AluY SINE Alu 35 303 -8 437 309 33 132 chr12 27354175 27354231 -116928258 - L2 LINE L2 -377 2895 2835 309 229 14 14 chr12 27354554 27354624 -116927865 + L2 LINE L2 2689 2758 -556 538 258 76 0 chr12 27354896 27355028 -116927461 - MLT1J LTR MaLR -369 142 1 2086 116 0 23 chr12 27356757 27357059 -116925430 + AluSx SINE Alu 1 295 -17 386 211 108 69 chr12 27357329 27357533 -116924956 - L2 LINE L2 -8 3305 3094 2766 175 19 21 chr12 27357546 27358128 -116924361 + L1MB4 LINE L1 5594 6174 -6 187 259 37 0 chr12 27360001 27360055 -116922434 + L2 LINE L2 2995 3050 -222 366 352 31 8 chr12 27360220 27360348 -116922141 - L2 LINE L2 -13 3259 3129 237 245 0 0 chr12 27360496 27360549 -116921940 + L2 LINE L2 3261 3313 0 1955 132 33 3 chr12 27360972 27361306 -116921183 - MER47A DNA MER2_type -3 363 20 293 252 28 63 chr12 27361617 27361760 -116920729 - L1ME4a LINE L1 -4 6117 5980 2017 150 0 10 chr12 27361922 27362228 -116920261 + AluSx SINE Alu 1 303 -9 540 208 72 16 chr12 27363091 27363216 -116919273 + FLAM_C SINE Alu 1 132 -1 239 214 0 0 chr12 27363706 27363748 -116918741 + (CA)n Simple_repeat Simple_repeat 2 43 0 25 0 0 0 chr12 27366188 27366213 -116916276 + AT_rich Low_complexity Low_complexity 1 25 0 1176 161 0 50 chr12 27366312 27366530 -116915959 - AluJb SINE Alu -21 291 85 2326 71 20 7 chr12 27366872 27367169 -116915320 - AluSc SINE Alu -8 301 1 274 322 141 28 chr12 27367518 27367695 -116914794 - MIR3 SINE MIR -2 206 10 344 154 51 26 chr12 27368064 27368142 -116914347 + Tigger7 DNA MER2_type 1 80 -470 2265 103 0 7 chr12 27368144 27368434 -116914055 - AluSx SINE Alu -24 288 1 2185 98 0 0 chr12 27368637 27368922 -116913567 + AluSx SINE Alu 1 285 -27 369 0 0 0 chr12 27368922 27368963 -116913526 + (CA)n Simple_repeat Simple_repeat 2 42 0 675 222 105 6 chr12 27369414 27369576 -116912913 + MER45A DNA AcHobo 1 178 0 1423 169 89 30 chr12 27369752 27370178 -116912311 + pTR5 LTR ERV1 743 1193 -1245 525 248 9 0 chr12 27370550 27370659 -116911830 - MER5A DNA MER1_type 0 189 80 1229 239 112 73 chr12 27370763 27371215 -116911274 - L1MC4 LINE L1 0 8042 7554 2333 109 3 0 chr12 27371215 27371526 -116910963 + AluSx SINE Alu 1 312 0 1229 239 112 73 chr12 27371526 27371742 -116910747 - L1MC4 LINE L1 -488 7554 7348 219 139 0 0 chr12 27372058 27372094 -116910395 + (CA)n Simple_repeat Simple_repeat 2 37 0 23 0 0 0 chr12 27372371 27372394 -116910095 + AT_rich Low_complexity Low_complexity 1 23 0 1559 179 62 0 chr12 27372669 27372942 -116909547 + AluJb SINE Alu 1 290 -22 683 293 60 9 chr12 27373062 27373294 -116909195 + MIR SINE MIR 4 247 -15 877 218 6 6 chr12 27373303 27373477 -116909012 - FRAM SINE Alu -3 173 1 1953 141 7 0 chr12 27373697 27373996 -116908493 - AluSx SINE Alu 0 312 12 1560 196 10 10 chr12 27374809 27375100 -116907389 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr12 27375100 27375121 -116907368 + AT_rich Low_complexity Low_complexity 1 21 0 311 173 53 0 chr12 27375344 27375419 -116907070 + L1MB3 LINE L1 6089 6167 -16 651 132 9 0 chr12 27375880 27375986 -116906503 - AluSg/x SINE Alu 0 309 203 1397 80 16 21 chr12 27376091 27376278 -116906211 - AluSq SINE Alu -127 186 1 27 29 0 0 chr12 27377071 27377105 -116905384 + AT_rich Low_complexity Low_complexity 1 34 0 785 331 156 24 chr12 27377152 27377206 -116905283 - L3 LINE CR1 -578 999 954 2323 138 121 30 chr12 27377206 27377669 -116904820 + MLT1D LTR MaLR 1 505 0 785 331 156 24 chr12 27377669 27378046 -116904443 - L3 LINE CR1 -623 954 628 2230 120 0 3 chr12 27378046 27378347 -116904142 - AluSx SINE Alu -7 305 6 785 331 156 24 chr12 27378347 27378637 -116903852 - L3 LINE CR1 -949 628 181 1617 197 11 0 chr12 27378708 27378992 -116903497 + AluJb SINE Alu 1 287 -25 27 29 0 0 chr12 27379002 27379036 -116903453 + AT_rich Low_complexity Low_complexity 1 34 0 535 267 47 7 chr12 27379371 27379521 -116902968 - MIR SINE MIR -64 198 43 255 259 9 28 chr12 27379605 27379713 -116902776 - L1MC5 LINE L1 -48 7913 7808 2408 225 73 42 chr12 27379737 27380001 -116902488 - L1ME1 LINE L1 -23 6143 5888 2299 111 3 0 chr12 27380001 27380308 -116902181 - AluSx SINE Alu -4 308 1 2408 225 73 42 chr12 27380308 27380859 -116901630 - L1ME1 LINE L1 -278 5888 5296 2025 112 0 0 chr12 27380859 27381135 -116901354 - AluSx SINE Alu -36 276 1 2408 225 73 42 chr12 27381135 27381332 -116901157 - L1ME1 LINE L1 -870 5296 5106 253 318 15 50 chr12 27381475 27381490 -116900999 - L1MDa LINE L1 -6329 211 197 1981 136 0 48 chr12 27381490 27381800 -116900689 + AluSx SINE Alu 3 297 -15 253 318 15 50 chr12 27381800 27381982 -116900507 - L1MDa LINE L1 -6343 197 21 2342 105 0 6 chr12 27382641 27382954 -116899535 - AluSx SINE Alu -1 311 1 728 239 53 25 chr12 27382961 27383204 -116899285 - MER112 DNA MER1_type -8 252 3 556 250 38 87 chr12 27383637 27383761 -116898728 + MIR SINE MIR 12 141 -121 409 91 13 13 chr12 27383761 27383838 -116898651 + (TA)n Simple_repeat Simple_repeat 1 77 0 2103 129 7 20 chr12 27383838 27384140 -116898349 - AluJo SINE Alu -14 298 1 556 250 38 87 chr12 27384140 27384278 -116898211 + MIR SINE MIR 139 262 0 34 65 0 0 chr12 27384514 27384576 -116897913 + AT_rich Low_complexity Low_complexity 1 62 0 1085 168 0 0 chr12 27385105 27385272 -116897217 - FRAM SINE Alu -10 166 1 1674 184 0 32 chr12 27385329 27385638 -116896851 + AluJo SINE Alu 1 299 -13 27 92 0 0 chr12 27385663 27385739 -116896750 + AT_rich Low_complexity Low_complexity 1 76 0 5061 125 24 50 chr12 27386276 27386346 -116896143 - MER49 LTR ERV1 0 923 853 7294 41 3 1 chr12 27386346 27387232 -116895257 + L1PA7 LINE L1 5254 6141 -13 207 0 0 0 chr12 27387236 27387259 -116895230 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 5061 125 24 50 chr12 27387259 27388037 -116894452 - MER49 LTR ERV1 -73 850 93 1669 183 11 0 chr12 27388037 27388342 -116894147 - AluJb SINE Alu 0 308 1 5061 125 24 50 chr12 27388342 27388433 -116894056 - MER49 LTR ERV1 -830 93 1 394 273 83 0 chr12 27388637 27388758 -116893731 + MIR SINE MIR 2 132 -130 640 266 87 28 chr12 27388787 27389212 -116893277 + LTR33 LTR ERVL 54 503 -18 242 250 29 44 chr12 27389229 27389297 -116893192 + MIR SINE MIR 167 233 -29 677 300 25 17 chr12 27389933 27390063 -116892426 + MIR SINE MIR 12 146 -116 1936 123 49 0 chr12 27390063 27390348 -116892141 + AluJo SINE Alu 1 299 -13 677 300 25 17 chr12 27390348 27390454 -116892035 + MIR SINE MIR 146 250 -12 282 116 0 0 chr12 27390601 27390644 -116891845 + (TA)n Simple_repeat Simple_repeat 1 43 0 810 214 48 19 chr12 27390737 27390943 -116891546 + MIR SINE MIR 1 212 -50 772 217 17 0 chr12 27391074 27391249 -116891240 + L1ME2 LINE L1 5986 6163 -1 329 284 69 9 chr12 27391759 27391875 -116890614 - MIR SINE MIR -73 189 67 272 295 43 0 chr12 27393777 27393916 -116888573 - MER103 DNA DNA -5 161 17 1967 133 27 0 chr12 27394325 27394619 -116887870 - AluSx SINE Alu -10 302 1 819 208 6 11 chr12 27394673 27394856 -116887633 + Tigger1 DNA MER2_type 1 182 -2236 621 173 27 0 chr12 27394868 27394978 -116887511 - FLAM_C SINE Alu -21 122 10 7698 111 1 37 chr12 27394986 27395760 -116886729 + Tigger1 DNA MER2_type 177 889 -1529 2308 100 0 0 chr12 27395760 27396060 -116886429 + AluSx SINE Alu 1 300 -12 7698 111 1 37 chr12 27396060 27396733 -116885756 + Tigger1 DNA MER2_type 889 1584 -834 848 150 8 0 chr12 27396734 27396861 -116885628 - AluSg/x SINE Alu -11 301 174 399 301 59 59 chr12 27398436 27398622 -116883867 + L2 LINE L2 3068 3253 -19 222 105 0 0 chr12 27398623 27398661 -116883828 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 2029 116 7 7 chr12 27398661 27398946 -116883543 - AluSp SINE Alu -28 285 1 3114 79 5 12 chr12 27399204 27399611 -116882878 - L1PA8 LINE L1 -1 6171 5768 264 250 125 25 chr12 27400390 27400510 -116881979 + L1MEd LINE L1 1 132 -5987 1082 146 0 6 chr12 27400719 27400912 -116881577 + AluSg/x SINE Alu 121 312 0 385 169 0 0 chr12 27400912 27400977 -116881512 + MLT1A1 LTR MaLR 301 365 0 2448 68 0 3 chr12 27401300 27401596 -116880893 + AluY SINE Alu 1 295 -16 533 233 43 0 chr12 27401868 27401984 -116880505 + L2 LINE L2 3192 3312 -1 396 0 0 0 chr12 27402348 27402392 -116880097 + (ATG)n Simple_repeat Simple_repeat 2 45 0 552 148 9 35 chr12 27402461 27402576 -116879913 - LTR41 LTR ERVL -2 771 660 1321 148 39 0 chr12 27402579 27402782 -116879707 + AluJb SINE Alu 1 211 -101 709 180 23 8 chr12 27402791 27403100 -116879389 + AluJb SINE Alu 166 476 0 2571 52 0 0 chr12 27403154 27403459 -116879030 + AluY SINE Alu 1 305 -6 337 292 183 0 chr12 27403861 27403998 -116878491 - LTR41 LTR ERVL -611 162 1 2415 97 0 0 chr12 27404500 27404800 -116877689 + AluSx SINE Alu 1 300 -12 2372 62 0 20 chr12 27406635 27406940 -116875549 + AluY SINE Alu 1 299 -12 1033 161 6 0 chr12 27407190 27407352 -116875137 - FRAM SINE Alu -13 163 1 340 82 311 0 chr12 27407369 27407430 -116875059 + MADE1 DNA Mariner 1 80 0 1792 172 33 7 chr12 27407491 27407794 -116874695 - AluJb SINE Alu -1 311 1 319 163 0 17 chr12 27408032 27408185 -116874304 + AluJb SINE Alu 87 291 -11 300 282 0 0 chr12 27408238 27408309 -116874180 - L2 LINE L2 -1 3312 3242 23 0 0 0 chr12 27408397 27408420 -116874069 + AT_rich Low_complexity Low_complexity 1 23 0 1209 163 24 10 chr12 27408508 27408717 -116873772 - AluJb SINE Alu -15 297 86 1158 122 14 75 chr12 27409301 27409515 -116872974 + AluJo SINE Alu 86 286 -26 249 33 0 0 chr12 27409515 27409545 -116872944 + (TA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr12 27411015 27411037 -116871452 + AT_rich Low_complexity Low_complexity 1 22 0 2081 134 0 0 chr12 27411566 27411869 -116870620 - AluSx SINE Alu 0 303 1 21 71 0 0 chr12 27411883 27411925 -116870564 + AT_rich Low_complexity Low_complexity 1 42 0 617 195 71 47 chr12 27412559 27412728 -116869761 - MER104 DNA MER2_type -4 176 4 839 174 12 25 chr12 27413849 27414010 -116868479 + MER5A DNA MER1_type 5 163 -26 2662 209 276 91 chr12 27414087 27414485 -116868004 + L2 LINE L2 525 848 -2466 1567 203 3 10 chr12 27414485 27414780 -116867709 - AluJo SINE Alu -19 293 1 2662 209 276 91 chr12 27414780 27415906 -116866583 + L2 LINE L2 848 2332 -982 823 318 55 40 chr12 27415937 27416390 -116866099 - L2 LINE L2 -616 2698 2239 539 260 0 8 chr12 27416390 27416517 -116865972 - L2 LINE L2 -1336 1978 1853 234 266 147 63 chr12 27416518 27416770 -116865719 - L2 LINE L2 -1747 1567 1295 421 315 119 8 chr12 27417429 27417664 -116864825 - L3 LINE CR1 -126 1451 1191 387 95 16 0 chr12 27417839 27417902 -116864587 + Alu SINE Alu 239 302 0 2479 45 3 36 chr12 27418558 27418867 -116863622 + AluY SINE Alu 1 299 -12 189 74 0 0 chr12 27419077 27419104 -116863385 + (GA)n Simple_repeat Simple_repeat 2 28 0 186 375 14 0 chr12 27421088 27421160 -116861329 + L2 LINE L2 1852 1924 -1390 1563 238 45 11 chr12 27422423 27422802 -116859687 + MSTD LTR MaLR 1 392 -4 2541 75 0 0 chr12 27422944 27423252 -116859237 + AluY SINE Alu 1 308 -3 23794 94 9 3 chr12 27423354 27427154 -116855335 + L1P3 LINE L1 1956 5774 -380 397 278 28 35 chr12 27427500 27427644 -116854845 + MIR3 SINE MIR 14 156 -52 862 243 35 24 chr12 27427860 27428115 -116854374 - MIR SINE MIR -1 261 4 437 123 48 27 chr12 27428714 27428976 -116853513 + (TA)n Simple_repeat Simple_repeat 1 267 0 307 281 98 117 chr12 27430225 27430705 -116851784 - L1M2 LINE L1 -5925 924 454 2271 99 0 0 chr12 27431511 27431805 -116850684 + AluSx SINE Alu 1 294 -18 2373 83 0 7 chr12 27432279 27432580 -116849909 + AluSq SINE Alu 1 299 -14 329 216 62 10 chr12 27433552 27433649 -116848840 - MER115 DNA AcHobo -8 685 584 2006 132 0 3 chr12 27434432 27434736 -116847753 - AluSq SINE Alu -10 303 1 232 243 117 18 chr12 27434772 27434883 -116847606 - L1ME4a LINE L1 -2 6119 5998 272 284 147 0 chr12 27436873 27436982 -116845507 - MIR SINE MIR -106 156 32 299 321 79 14 chr12 27437033 27437173 -116845316 + MIR SINE MIR 52 200 -62 385 250 17 57 chr12 27437219 27437395 -116845094 + CT-rich Low_complexity Low_complexity 4 172 0 2135 101 17 14 chr12 27437401 27437697 -116844792 - AluSx SINE Alu -7 305 9 2273 103 0 7 chr12 27438022 27438324 -116844165 + AluSx SINE Alu 1 300 -12 96 53 0 0 chr12 27438452 27438604 -116843885 + AT_rich Low_complexity Low_complexity 1 152 0 240 277 113 92 chr12 27438623 27438764 -116843725 + L2 LINE L2 3129 3272 0 2380 93 0 3 chr12 27439846 27440157 -116842332 + AluSg SINE Alu 1 310 0 518 62 37 25 chr12 27441698 27441779 -116840710 + L1MA5 LINE L1 6217 6298 -2 2060 135 0 0 chr12 27441786 27442082 -116840407 + AluSg SINE Alu 1 296 -14 611 140 59 1 chr12 27442089 27442211 -116840278 + L1MC3 LINE L1 7677 7785 0 616 332 142 38 chr12 27442718 27442834 -116839655 - L2 LINE L2 -181 3091 2988 1621 184 23 23 chr12 27442834 27443143 -116839346 + AluJo SINE Alu 4 312 0 616 332 142 38 chr12 27443143 27443792 -116838697 - L2 LINE L2 -284 2988 2265 1164 61 7 14 chr12 27443792 27443939 -116838550 + AluY SINE Alu 1 146 -165 1434 78 5 11 chr12 27444045 27444236 -116838253 + L1PA7 LINE L1 5964 6153 -1 2502 73 0 0 chr12 27444548 27444850 -116837639 + AluY SINE Alu 1 302 -9 414 206 48 87 chr12 27445898 27446024 -116836465 - MIR3 SINE MIR -3 205 85 1553 237 133 32 chr12 27447351 27447854 -116834635 - MER68 LTR ERV1 -8 554 1 2372 228 60 1 chr12 27447854 27448624 -116833865 + L1ME1 LINE L1 4651 5464 -743 273 279 317 0 chr12 27448812 27448916 -116833573 + L2 LINE L2 3136 3272 0 2231 102 3 0 chr12 27450711 27451018 -116831471 + AluSq SINE Alu 1 308 0 316 291 0 17 chr12 27451030 27451147 -116831342 + L1ME4a LINE L1 5986 6100 -21 23 33 0 0 chr12 27451156 27451186 -116831303 + AT_rich Low_complexity Low_complexity 1 30 0 182 333 0 0 chr12 27451677 27451725 -116830764 + L2 LINE L2 3219 3266 -6 21 71 0 0 chr12 27452823 27452865 -116829624 + AT_rich Low_complexity Low_complexity 1 42 0 245 204 75 32 chr12 27453225 27453318 -116829171 + L1ME1 LINE L1 5505 5601 -743 502 194 56 160 chr12 27453336 27453612 -116828877 + L1ME1 LINE L1 5880 6125 -41 328 223 115 0 chr12 27453647 27453777 -116828712 - L1ME4a LINE L1 -4 6117 5973 300 266 130 39 chr12 27454222 27454349 -116828140 - L1ME4a LINE L1 -171 5950 5795 2171 118 3 0 chr12 27454349 27454645 -116827844 + AluSq SINE Alu 1 297 -16 300 266 130 39 chr12 27454645 27454724 -116827765 - L1ME4a LINE L1 -326 5795 5725 602 98 33 0 chr12 27454743 27454835 -116827654 - AluSg/x SINE Alu -8 304 210 1845 77 3 23 chr12 27455704 27456000 -116826489 + THE1C LTR MaLR 1 375 0 2188 115 3 0 chr12 27456110 27456405 -116826084 - AluSx SINE Alu -16 296 1 22 70 0 0 chr12 27456822 27456865 -116825624 + AT_rich Low_complexity Low_complexity 1 43 0 444 207 96 64 chr12 27457226 27457414 -116825075 + L1MC5 LINE L1 7732 7925 -36 2048 140 0 7 chr12 27457426 27457726 -116824763 + AluSx SINE Alu 2 299 -13 1715 179 0 10 chr12 27458004 27458300 -116824189 - AluSx SINE Alu -16 296 4 2198 162 119 38 chr12 27458699 27459205 -116823284 + MER44D DNA MER2_type 159 705 0 24 0 0 0 chr12 27459391 27459415 -116823074 + AT_rich Low_complexity Low_complexity 1 24 0 26 74 0 0 chr12 27459647 27459701 -116822788 + AT_rich Low_complexity Low_complexity 1 54 0 217 276 0 17 chr12 27460200 27460258 -116822231 - L2 LINE L2 -1 3312 3256 1103 82 0 0 chr12 27460892 27461026 -116821463 - AluSp/q SINE Alu -17 296 163 262 306 174 0 chr12 27461027 27461146 -116821343 - MIR SINE MIR -114 148 9 361 224 0 0 chr12 27461146 27461213 -116821276 + MER5A DNA MER1_type 1 67 -122 860 148 7 7 chr12 27461216 27461351 -116821138 - AluJo SINE Alu -177 135 1 22 0 0 0 chr12 27461363 27461385 -116821104 + AT_rich Low_complexity Low_complexity 1 22 0 237 230 13 118 chr12 27461410 27461562 -116820927 + LTR2 LTR ERV1 4 139 -310 848 139 0 36 chr12 27463231 27463368 -116819121 - FLAM_C SINE Alu -1 132 1 360 287 74 9 chr12 27463732 27463840 -116818649 - L2 LINE L2 0 3313 3199 21 36 0 0 chr12 27464393 27464421 -116818068 + AT_rich Low_complexity Low_complexity 1 28 0 518 184 104 75 chr12 27465356 27465557 -116816932 - L1MC4 LINE L1 0 8042 7836 398 241 0 13 chr12 27465693 27465772 -116816717 + MER21B LTR ERV1 13 90 -773 2090 245 113 37 chr12 27465794 27466517 -116815972 + MER21B LTR ERV1 19 796 -67 40 0 0 0 chr12 27466663 27466703 -116815786 + AT_rich Low_complexity Low_complexity 1 40 0 1961 150 0 0 chr12 27466703 27466989 -116815500 - AluJb SINE Alu -22 290 5 1983 213 50 6 chr12 27468029 27468509 -116813980 + L1M4 LINE L1 3668 4168 -1978 1144 196 87 57 chr12 27468517 27468782 -116813707 + AluJo SINE Alu 2 274 -38 570 160 23 8 chr12 27468782 27468913 -116813576 + GA-rich Low_complexity Low_complexity 3 135 0 2462 198 62 2 chr12 27468916 27469527 -116812962 + L1M4 LINE L1 4152 4799 -1347 217 200 33 0 chr12 27470198 27470238 -116812251 + A-rich Low_complexity Low_complexity 4 48 -17 2252 118 0 3 chr12 27470238 27470551 -116811938 + AluSx SINE Alu 1 312 0 217 200 33 0 chr12 27470551 27470570 -116811919 + A-rich Low_complexity Low_complexity 48 65 0 2395 90 0 0 chr12 27470888 27471189 -116811300 + AluSq SINE Alu 1 301 -12 370 321 46 68 chr12 27471204 27471643 -116810846 + HAL1 LINE L1 91 519 -1988 709 163 0 8 chr12 27471661 27471784 -116810705 + MER3 DNA MER1_type 6 127 -82 657 273 205 30 chr12 27471795 27473124 -116809365 + HAL1 LINE L1 592 2210 -297 1427 122 32 5 chr12 27473142 27473363 -116809126 + AluSg/x SINE Alu 68 294 -18 303 198 173 25 chr12 27473381 27473543 -116808946 + HAL1 LINE L1 2298 2483 -24 193 283 43 87 chr12 27473812 27473950 -116808539 - L2 LINE L2 0 3272 3141 240 323 214 12 chr12 27473983 27474310 -116808179 - L2 LINE L2 -138 3175 2762 468 272 94 31 chr12 27474560 27474765 -116807724 - MIR SINE MIR -30 232 19 424 252 54 9 chr12 27475155 27475266 -116807223 + MIR SINE MIR 37 152 -110 461 282 0 0 chr12 27475371 27475488 -116807001 + MIR SINE MIR 146 262 0 240 246 0 18 chr12 27477078 27477135 -116805354 + (CG)n Simple_repeat Simple_repeat 2 57 0 180 368 80 8 chr12 27478200 27478325 -116804164 + L2 LINE L2 2359 2492 -822 208 311 183 63 chr12 27478570 27478904 -116803585 + L2 LINE L2 2872 3245 -27 192 40 0 0 chr12 27481123 27481148 -116801341 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 2129 86 0 0 chr12 27481148 27481415 -116801074 - AluSg SINE Alu -32 278 12 8222 227 74 36 chr12 27481749 27482637 -116799852 - L1MC/D LINE L1 -743 5403 4550 2220 112 0 10 chr12 27482637 27482941 -116799548 + AluSx SINE Alu 1 301 -11 8222 227 74 36 chr12 27482941 27483089 -116799400 - L1MC/D LINE L1 -1596 4550 4409 201 44 22 44 chr12 27483089 27483134 -116799355 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 8222 227 74 36 chr12 27483134 27484673 -116797816 - L1MC/D LINE L1 -1737 4409 2930 2334 90 0 0 chr12 27484673 27484974 -116797515 + AluSq SINE Alu 1 301 -12 8222 227 74 36 chr12 27484974 27485410 -116797079 - L1MC/D LINE L1 -3216 2930 2348 1599 179 10 10 chr12 27485410 27485706 -116796783 - AluJb SINE Alu -16 296 1 8222 227 74 36 chr12 27485706 27485740 -116796749 - L1MC/D LINE L1 -3798 2348 2317 2396 227 114 36 chr12 27485755 27486516 -116795973 - L1ME1 LINE L1 -5 6555 5855 1429 169 123 0 chr12 27486516 27486776 -116795713 - AluJb SINE Alu -10 292 1 2396 227 114 36 chr12 27486776 27487749 -116794740 - L1ME1 LINE L1 -705 5855 1637 521 200 70 17 chr12 27487988 27488103 -116794386 + FLAM_A SINE Alu 1 121 -12 24 0 0 0 chr12 27488112 27488136 -116794353 + AT_rich Low_complexity Low_complexity 1 24 0 2075 125 14 0 chr12 27488230 27488526 -116793963 - AluSq SINE Alu -13 300 1 2371 88 0 3 chr12 27488678 27488974 -116793515 - AluSq SINE Alu -18 295 1 2535 58 0 16 chr12 27489312 27489625 -116792864 - AluY SINE Alu 0 311 4 321 330 69 30 chr12 27489838 27490071 -116792418 - MER89-int LTR ERV1 -3159 3642 3401 1180 113 17 6 chr12 27490251 27490428 -116792061 - AluSg/x SINE Alu -11 299 121 2003 120 0 0 chr12 27490455 27490721 -116791768 - AluSx SINE Alu -46 266 1 180 0 0 0 chr12 27491189 27491209 -116791280 + (T)n Simple_repeat Simple_repeat 1 20 0 2370 65 0 19 chr12 27492082 27492392 -116790097 + AluY SINE Alu 1 304 -7 4460 147 48 20 chr12 27494426 27495021 -116787468 - L1MB7 LINE L1 -14 6170 5535 1287 111 93 28 chr12 27495021 27495237 -116787252 - MER30 DNA MER1_type 0 230 1 4460 147 48 20 chr12 27495237 27495541 -116786948 - L1MB7 LINE L1 -649 5535 5241 262 88 0 35 chr12 27495545 27495602 -116786887 + (TA)n Simple_repeat Simple_repeat 2 56 0 436 271 128 31 chr12 27495862 27496120 -116786369 + L2 LINE L2 2464 2746 -568 1798 182 0 7 chr12 27497179 27497475 -116785014 + AluJo SINE Alu 1 294 -18 27 0 0 0 chr12 27498267 27498294 -116784195 + AT_rich Low_complexity Low_complexity 1 27 0 2034 115 35 3 chr12 27500565 27500851 -116781638 + AluSq SINE Alu 1 295 -18 738 158 0 55 chr12 27501104 27501269 -116781220 + MER3 DNA MER1_type 6 161 -48 343 346 47 0 chr12 27501651 27501758 -116780731 + L2 LINE L2 3136 3247 -25 21 0 0 0 chr12 27504181 27504202 -116778287 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 27504926 27504955 -116777534 + AT_rich Low_complexity Low_complexity 1 29 0 891 220 53 36 chr12 27505918 27506341 -116776148 + MLT1C LTR MaLR 1 467 0 2154 97 4 4 chr12 27506487 27506765 -116775724 + AluSq SINE Alu 22 299 -14 1834 195 138 8 chr12 27506909 27507402 -116775087 + L2 LINE L2 2043 2599 -715 242 174 0 0 chr12 27507420 27507466 -116775023 + L1ME LINE L1 5727 5772 -349 1603 236 65 11 chr12 27508014 27508472 -116774017 - LTR34 LTR ERV1 -4 695 213 483 348 135 12 chr12 27508546 27508805 -116773684 + L2 LINE L2 2979 3269 -3 2009 118 21 11 chr12 27508844 27509131 -116773358 - AluSx SINE Alu -17 295 6 1649 150 64 47 chr12 27509348 27509709 -116772780 - MLT1B LTR MaLR -19 371 5 280 339 109 12 chr12 27510104 27510269 -116772220 + MIR3 SINE MIR 14 194 -14 1760 106 24 109 chr12 27511521 27511850 -116770639 - AluYb8 SINE Alu -17 301 1 331 116 72 14 chr12 27512101 27512170 -116770319 + L1MB2 LINE L1 6097 6169 -2 1665 168 30 14 chr12 27512276 27512573 -116769916 - AluJb SINE Alu -10 302 1 311 250 201 35 chr12 27515706 27515850 -116766639 + MIR3 SINE MIR 40 207 -1 330 240 173 34 chr12 27516304 27516512 -116765977 + Charlie7 DNA MER1_type 319 555 -2057 2193 127 0 0 chr12 27516572 27516864 -116765625 + AluSx SINE Alu 1 292 -20 330 26 0 0 chr12 27516867 27516906 -116765583 + (TG)n Simple_repeat Simple_repeat 2 40 0 1752 163 24 0 chr12 27516921 27517209 -116765280 + AluJo SINE Alu 1 295 -17 237 189 78 44 chr12 27517270 27517360 -116765129 + Charlie7 DNA MER1_type 2520 2612 0 259 254 212 85 chr12 27517398 27517563 -116764926 - MIR SINE MIR -55 207 22 1908 139 10 23 chr12 27517679 27517981 -116764508 - AluJo SINE Alu -14 298 1 223 314 14 0 chr12 27517988 27518058 -116764431 - MER5A DNA MER1_type -80 109 39 1066 159 0 28 chr12 27520451 27520627 -116761862 + FAM SINE Alu 5 175 0 1986 152 0 7 chr12 27521134 27521436 -116761053 - AluJb SINE Alu -12 300 1 824 158 0 8 chr12 27521450 27521577 -116760912 - FLAM_C SINE Alu -17 126 1 283 250 0 73 chr12 27522108 27522232 -116760257 + L1MC5 LINE L1 7175 7289 -672 800 188 73 122 chr12 27522352 27522761 -116759728 + L1MC5 LINE L1 7484 7872 -89 22 0 0 0 chr12 27522831 27522853 -116759636 + AT_rich Low_complexity Low_complexity 1 22 0 2189 105 6 13 chr12 27523248 27523562 -116758927 + AluSx SINE Alu 1 312 0 1131 74 0 0 chr12 27524315 27524450 -116758039 + AluSq/x SINE Alu 1 135 -177 1697 145 26 4 chr12 27524450 27524719 -116757770 + AluSx SINE Alu 1 275 -37 429 252 54 9 chr12 27524924 27525035 -116757454 + MIR SINE MIR 37 152 -110 455 282 0 0 chr12 27525140 27525257 -116757232 + MIR SINE MIR 146 262 0 240 246 0 18 chr12 27526836 27526893 -116755596 + (CG)n Simple_repeat Simple_repeat 2 57 0 185 368 80 8 chr12 27527958 27528083 -116754406 + L2 LINE L2 2359 2492 -822 220 311 183 63 chr12 27528328 27528662 -116753827 + L2 LINE L2 2872 3245 -27 192 40 0 0 chr12 27530881 27530906 -116751583 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 2118 86 0 0 chr12 27530906 27531173 -116751316 - AluSg SINE Alu -32 278 12 7451 225 74 37 chr12 27531507 27532396 -116750093 - L1MC/D LINE L1 -743 5403 4549 2267 109 0 10 chr12 27532396 27532700 -116749789 + AluSx SINE Alu 1 301 -11 7451 225 74 37 chr12 27532700 27532848 -116749641 - L1MC/D LINE L1 -1597 4549 4408 201 44 22 44 chr12 27532848 27532893 -116749596 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 7451 225 74 37 chr12 27532893 27534432 -116748057 - L1MC/D LINE L1 -1738 4408 2928 2344 90 0 0 chr12 27534432 27534733 -116747756 + AluSq SINE Alu 1 301 -12 7451 225 74 37 chr12 27534733 27535169 -116747320 - L1MC/D LINE L1 -3218 2928 2348 1618 179 10 10 chr12 27535169 27535465 -116747024 - AluJb SINE Alu -16 296 1 7451 225 74 37 chr12 27535465 27535499 -116746990 - L1MC/D LINE L1 -3798 2348 2317 2150 215 86 40 chr12 27535506 27536274 -116746215 - L1MB8 LINE L1 -5 6567 5836 1445 169 123 0 chr12 27536274 27536534 -116745955 - AluJb SINE Alu -10 292 1 2150 215 86 40 chr12 27536534 27537507 -116744982 - L1MB8 LINE L1 -736 5836 1637 530 200 70 17 chr12 27537746 27537861 -116744628 + FLAM_A SINE Alu 1 121 -12 24 0 0 0 chr12 27537870 27537894 -116744595 + AT_rich Low_complexity Low_complexity 1 24 0 2097 125 14 0 chr12 27537988 27538284 -116744205 - AluSq SINE Alu -13 300 1 2392 88 0 3 chr12 27538436 27538732 -116743757 - AluSq SINE Alu -18 295 1 1780 161 3 19 chr12 27539070 27539386 -116743103 - AluY SINE Alu 0 311 1 947 219 31 22 chr12 27539650 27539874 -116742615 - AluJo SINE Alu 0 312 87 230 263 32 68 chr12 27540443 27540633 -116741856 - AluSp SINE Alu -8 295 113 2659 141 4 57 chr12 27540803 27540833 -116741656 + MER31A LTR ERV1 1 31 -454 2502 40 0 52 chr12 27540833 27541161 -116741328 - AluY SINE Alu 0 311 1 2659 141 4 57 chr12 27541161 27541642 -116740847 + MER31A LTR ERV1 31 485 0 2034 226 74 89 chr12 27541707 27542095 -116740394 + L2 LINE L2 1759 2187 -1127 280 140 0 0 chr12 27542095 27542152 -116740337 + Tigger2 DNA MER2_type 2281 2337 -381 2034 226 74 89 chr12 27542152 27542503 -116739986 + L2 LINE L2 2187 2542 -772 2782 196 75 57 chr12 27542506 27543214 -116739275 + L1MC4 LINE L1 6966 7660 -382 1884 156 0 3 chr12 27543214 27543497 -116738992 - AluJb SINE Alu -30 282 1 2782 196 75 57 chr12 27543497 27543706 -116738783 + L1MC4 LINE L1 7660 7903 -139 333 0 0 0 chr12 27543706 27543743 -116738746 + (TG)n Simple_repeat Simple_repeat 2 38 0 2782 196 75 57 chr12 27543743 27543760 -116738729 + L1MC4 LINE L1 7903 7918 -124 2261 132 46 59 chr12 27543760 27544190 -116738299 + Tigger2 DNA MER2_type 1 435 -2283 2190 116 0 3 chr12 27544190 27544484 -116738005 + AluSq SINE Alu 5 297 -16 2261 132 46 59 chr12 27544484 27544557 -116737932 + Tigger2 DNA MER2_type 435 2718 0 443 207 60 0 chr12 27544576 27544692 -116737797 + L1MC4 LINE L1 7918 8040 -2 180 0 0 0 chr12 27544701 27544721 -116737768 + (CA)n Simple_repeat Simple_repeat 2 21 0 994 272 96 13 chr12 27544723 27545413 -116737076 + L2 LINE L2 2556 3311 -2 343 336 47 0 chr12 27545944 27546051 -116736438 + L2 LINE L2 3179 3290 -23 2857 10 0 0 chr12 27546170 27546483 -116736006 - AluYb8 SINE Alu -5 313 1 321 247 99 39 chr12 27546752 27546934 -116735555 - L1MC4 LINE L1 -27 8015 7823 334 289 173 13 chr12 27546937 27547093 -116735396 - MER5A DNA MER1_type 0 189 9 1077 108 76 58 chr12 27547130 27547292 -116735197 - Tigger5 DNA MER2_type -12 2311 2142 2289 63 0 30 chr12 27547292 27547615 -116734874 - AluY SINE Alu 0 311 1 1077 108 76 58 chr12 27547615 27547675 -116734814 - Tigger5 DNA MER2_type -181 2142 2085 494 238 66 3 chr12 27547665 27547840 -116734649 - Tigger5 DNA MER2_type -2085 238 1 * 1853 147 20 7 chr12 27547937 27548237 -116734252 - AluJb SINE Alu -8 304 1 956 227 92 109 chr12 27548412 27549093 -116733396 - L1MC5 LINE L1 -548 7494 6888 527 292 88 12 chr12 27549381 27549422 -116733067 - MER5A DNA MER1_type 0 189 153 1958 113 0 0 chr12 27549422 27549678 -116732811 - AluSq SINE Alu -57 256 1 527 292 88 12 chr12 27549678 27549807 -116732682 - MER5A DNA MER1_type -36 153 6 1849 181 45 14 chr12 27550604 27550958 -116731531 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr12 27551041 27551064 -116731425 + AT_rich Low_complexity Low_complexity 1 23 0 912 148 0 22 chr12 27551064 27551199 -116731290 + FLAM_C SINE Alu 2 133 0 208 292 69 62 chr12 27551268 27551398 -116731091 + MIR SINE MIR 132 262 0 1065 227 20 0 chr12 27552107 27552310 -116730179 - MER58A DNA MER1_type -16 208 2 353 319 183 48 chr12 27552632 27552855 -116729634 + L2 LINE L2 1716 1908 -1406 2056 133 0 29 chr12 27552855 27553164 -116729325 - AluSg SINE Alu -10 300 1 353 319 183 48 chr12 27553164 27553904 -116728585 + L2 LINE L2 1908 2809 -505 2434 61 0 3 chr12 27554146 27554439 -116728050 + AluSg SINE Alu 1 292 -18 1465 215 28 28 chr12 27554916 27555270 -116727219 - MLT1A1 LTR MaLR 0 365 12 477 185 69 69 chr12 27555444 27555494 -116726995 - L1MA10 LINE L1 -3 6317 6268 2511 68 0 0 chr12 27555494 27555790 -116726699 - AluY SINE Alu -15 296 1 477 185 69 69 chr12 27555790 27555904 -116726585 - L1MA10 LINE L1 -51 6269 5997 195 161 0 0 chr12 27556606 27556637 -116725852 + L2 LINE L2 3266 3296 -17 226 189 38 0 chr12 27557061 27557114 -116725375 + (CA)n Simple_repeat Simple_repeat 2 56 0 1073 154 123 26 chr12 27557216 27557411 -116725078 + AluJo SINE Alu 5 218 -94 225 260 0 0 chr12 27557432 27557482 -116725007 + Alu SINE Alu 84 133 0 435 343 7 7 chr12 27558503 27558646 -116723843 - MIR SINE MIR -73 189 47 360 216 0 14 chr12 27558880 27558954 -116723535 + MIR SINE MIR 74 146 -116 2227 112 7 0 chr12 27560836 27561131 -116721358 - AluSx SINE Alu -15 297 1 2306 104 3 3 chr12 27561160 27561468 -116721021 - AluSc SINE Alu -1 308 1 450 187 21 0 chr12 27561828 27561932 -116720557 - L1ME LINE L1 -303 5818 5708 426 280 0 68 chr12 27562518 27562650 -116719839 + MER5B DNA MER1_type 1 123 -55 1860 256 87 55 chr12 27562689 27563808 -116718681 - L1ME3A LINE L1 -76 6094 4896 1246 162 73 8 chr12 27563808 27564042 -116718447 + L1PB4 LINE L1 5905 6153 -3 1860 256 87 55 chr12 27564042 27564599 -116717890 - L1ME3A LINE L1 -1274 4896 4359 776 172 8 8 chr12 27564606 27564728 -116717761 - FLAM_C SINE Alu -20 123 2 208 239 2 65 chr12 27564768 27564835 -116717654 + MER5B DNA MER1_type 123 177 -1 273 207 35 17 chr12 27565044 27565102 -116717387 + L2 LINE L2 3208 3266 -6 290 271 14 0 chr12 27565108 27565178 -116717311 + MIR SINE MIR 79 149 -113 210 253 48 60 chr12 27567036 27567119 -116715370 + MIR SINE MIR 111 192 -70 2377 71 7 0 chr12 27567749 27568046 -116714443 + AluSg SINE Alu 1 299 -11 321 254 6 85 chr12 27568427 27568604 -116713885 + MER31-int LTR ERV1 1050 1212 -3724 22 0 0 0 chr12 27569354 27569376 -116713113 + GC_rich Low_complexity Low_complexity 1 22 0 2378 137 146 2 chr12 27570175 27570599 -116711890 - MER31A LTR ERV1 0 485 1 23 0 0 0 chr12 27571041 27571064 -116711425 + AT_rich Low_complexity Low_complexity 1 23 0 520 285 120 51 chr12 27571075 27571437 -116711052 + L1ME4a LINE L1 5290 5696 -425 1121 167 0 0 chr12 27571437 27571605 -116710884 + FAM SINE Alu 1 168 -7 520 285 120 51 chr12 27571605 27571733 -116710756 + L1ME4a LINE L1 5696 5814 -307 2209 111 0 13 chr12 27571853 27572159 -116710330 - AluSg SINE Alu -8 302 1 692 181 0 68 chr12 27572164 27572222 -116710267 - FLAM_A SINE Alu -185 126 66 4396 81 43 5 chr12 27572222 27572781 -116709708 - LTR19B LTR ERV1 0 580 1 692 181 0 68 chr12 27572781 27572855 -116709634 - FLAM_A SINE Alu -245 66 3 341 279 10 0 chr12 27572886 27572990 -116709499 + L1ME4a LINE L1 5955 6059 -62 1630 190 10 10 chr12 27573553 27573671 -116708818 + AluJo SINE Alu 1 118 -194 258 32 0 0 chr12 27573671 27573702 -116708787 + (CA)n Simple_repeat Simple_repeat 2 32 0 1630 190 10 10 chr12 27573702 27573878 -116708611 + AluJo SINE Alu 117 295 -17 183 184 0 0 chr12 27573896 27573934 -116708555 + GA-rich Low_complexity Low_complexity 3 40 0 241 311 63 122 chr12 27574212 27574434 -116708055 - L2 LINE L2 -36 3236 3028 2135 121 3 7 chr12 27574488 27574794 -116707695 + AluSx SINE Alu 1 305 -7 330 184 146 19 chr12 27575111 27575214 -116707275 + L1MC5 LINE L1 7815 7930 -31 1213 194 9 0 chr12 27575501 27575718 -116706771 + MER20 DNA MER1_type 1 219 0 198 345 48 48 chr12 27576193 27576361 -116706128 + L2 LINE L2 2489 2656 -658 2219 49 3 28 chr12 27576893 27577224 -116705265 + AluY SINE Alu 1 324 0 242 245 163 10 chr12 27578247 27578323 -116704166 - L1M4 LINE L1 -1568 4578 4482 2149 85 30 7 chr12 27578323 27578628 -116703861 - AluSx SINE Alu 0 312 1 242 245 163 10 chr12 27578628 27578649 -116703840 - L1M4 LINE L1 -1664 4482 4466 238 193 18 18 chr12 27578773 27578830 -116703659 - Tigger3(Golem) DNA MER2_type 0 3038 2982 * 1682 158 56 16 chr12 27578819 27579141 -116703348 - Tigger3(Golem) DNA MER2_type -878 2151 20 181 346 112 9 chr12 27580003 27580110 -116702379 + L2 LINE L2 3155 3272 0 2432 82 0 0 chr12 27581963 27582257 -116700232 - AluSg SINE Alu -16 294 1 1446 169 22 117 chr12 27582553 27582956 -116699533 - MLT1A1 LTR MaLR 0 365 1 787 228 131 19 chr12 27584882 27585150 -116697339 + L1MDa LINE L1 1911 2208 -4332 1081 215 28 20 chr12 27585155 27585402 -116697087 - AluJo SINE Alu 0 312 64 344 162 128 74 chr12 27585416 27585564 -116696925 + L1MDa LINE L1 2304 2459 -4081 2326 83 14 0 chr12 27585947 27586237 -116696252 - AluSp SINE Alu -19 294 1 274 192 0 0 chr12 27586640 27586692 -116695797 - HERVL-E LTR ERVL -5600 54 3 361 281 29 47 chr12 27586710 27586881 -116695608 - MLT2E LTR ERVL -6 622 455 550 361 25 25 chr12 27587106 27587538 -116694951 + HERVL40 LTR ERVL 1186 1617 -3913 2333 197 66 42 chr12 27587599 27588172 -116694317 + MER92B LTR ERV1 3 589 -47 1408 199 108 38 chr12 27588181 27588522 -116693967 - MLT1A1 LTR MaLR 0 365 1 637 161 125 36 chr12 27588598 27588766 -116693723 - LTR68 LTR ERV1 -557 183 1 360 241 229 26 chr12 27588777 27589043 -116693446 + L1M4 LINE L1 2884 3203 -2943 2181 82 0 21 chr12 27589171 27589462 -116693027 + AluSq SINE Alu 8 292 -21 22 35 0 0 chr12 27589463 27589492 -116692997 + AT_rich Low_complexity Low_complexity 1 29 0 1623 172 22 4 chr12 27589495 27589768 -116692721 - AluJo SINE Alu -31 281 4 2062 117 0 3 chr12 27589791 27590082 -116692407 - AluSq SINE Alu -23 290 1 799 177 61 37 chr12 27590094 27590258 -116692231 + AluJb SINE Alu 132 299 -13 12110 31 1 1 chr12 27590470 27592590 -116689899 - L1PA3 LINE L1 0 6155 4034 342 207 0 46 chr12 27592770 27592857 -116689632 + HsTC2 DNA Tc2 1818 1900 0 668 296 128 24 chr12 27592858 27593521 -116688968 + L1M4 LINE L1 3850 4581 -1565 279 274 115 45 chr12 27593639 27593796 -116688693 + L1M4 LINE L1 4775 4942 -1204 806 93 124 0 chr12 27593850 27593979 -116688510 + L1MB7 LINE L1 6040 6184 0 1986 99 3 21 chr12 27593989 27594271 -116688218 + AluSg SINE Alu 27 303 -7 2365 80 7 0 chr12 27594279 27594579 -116687910 + AluSp SINE Alu 1 302 -11 2054 109 0 4 chr12 27594690 27594966 -116687523 - AluY SINE Alu -22 289 15 447 230 207 0 chr12 27595408 27595543 -116686946 + MIR SINE MIR 14 176 -86 6358 37 0 0 chr12 27595547 27596254 -116686235 - L1PA5 LINE L1 -1 6153 5447 18228 60 6 0 chr12 27596254 27598583 -116683906 + L1P LINE L1 1179 3521 -2625 432 335 63 0 chr12 27598628 27598786 -116683703 - HERV16 LTR ERVL -2573 2423 2256 27 49 0 0 chr12 27598786 27598827 -116683662 + AT_rich Low_complexity Low_complexity 1 41 0 1102 306 59 40 chr12 27598850 27599444 -116683045 - HERV16 LTR ERVL -2718 2278 1674 489 196 98 0 chr12 27599451 27599563 -116682926 - L1ME2 LINE L1 -249 5915 5793 352 348 27 11 chr12 27599586 27599773 -116682716 - HERV16 LTR ERVL -4084 1680 1491 869 286 84 69 chr12 27599916 27600169 -116682320 - HERV16 LTR ERVL -3976 1020 772 2630 132 44 0 chr12 27600169 27600579 -116681910 - MSTA LTR MaLR 0 428 1 869 286 84 69 chr12 27600579 27601074 -116681415 - HERV16 LTR ERVL -4224 772 261 580 177 0 0 chr12 27601160 27601256 -116681233 - AluJb SINE Alu -9 303 208 2553 199 66 19 chr12 27601259 27601924 -116680565 - L1ME1 LINE L1 -58 6108 5413 692 164 30 0 chr12 27601932 27602066 -116680423 - L1MA10 LINE L1 -17 6317 6180 973 209 63 66 chr12 27602083 27602499 -116679990 - L1ME1 LINE L1 -327 5839 5555 1337 203 95 70 chr12 27602541 27602918 -116679571 + Charlie7 DNA MER1_type 1720 2117 -495 631 89 20 10 chr12 27602918 27603019 -116679470 - L1MA5A LINE L1 -3 6294 6193 1337 203 95 70 chr12 27603019 27603199 -116679290 + Charlie7 DNA MER1_type 2117 2291 -321 931 170 4 69 chr12 27603180 27603427 -116679062 + Charlie1 DNA MER1_type 1852 2082 -679 * 895 110 24 8 chr12 27603477 27603604 -116678885 + AluSq/x SINE Alu 5 133 -179 21 0 0 0 chr12 27603702 27603723 -116678766 + AT_rich Low_complexity Low_complexity 1 21 0 383 301 110 22 chr12 27604517 27604653 -116677836 + MIR SINE MIR 4 151 -111 22 0 0 0 chr12 27604719 27604741 -116677748 + AT_rich Low_complexity Low_complexity 1 22 0 1375 159 130 32 chr12 27604788 27604924 -116677565 - AluJb SINE Alu -8 304 183 2438 91 0 0 chr12 27604924 27605221 -116677268 - AluSc SINE Alu -12 297 1 1375 159 130 32 chr12 27605221 27605361 -116677128 - AluJb SINE Alu -129 183 1 1907 185 28 23 chr12 27605419 27605813 -116676676 + MSTD LTR MaLR 1 396 0 212 238 88 12 chr12 27605846 27605926 -116676563 - MIR SINE MIR -132 130 45 2370 97 0 0 chr12 27606073 27606371 -116676118 + AluSx SINE Alu 1 298 -14 753 255 75 82 chr12 27606570 27606879 -116675610 - L2 LINE L2 0 3313 3006 1830 131 42 7 chr12 27606879 27607162 -116675327 - AluSx SINE Alu -19 293 1 753 255 75 82 chr12 27607162 27607280 -116675209 - L2 LINE L2 -307 3006 2889 5227 121 18 10 chr12 27607633 27608502 -116673987 - L1PA13 LINE L1 0 6163 5288 1205 198 8 4 chr12 27608702 27608960 -116673529 + L1MB8 LINE L1 5920 6178 0 2039 138 21 0 chr12 27608983 27609272 -116673217 + AluSg SINE Alu 3 297 -13 285 218 109 27 chr12 27609305 27609452 -116673037 + L1ME3 LINE L1 2098 2256 -4140 1042 295 28 28 chr12 27609514 27609947 -116672542 + L1ME3 LINE L1 4803 5238 -977 1874 155 0 13 chr12 27609947 27610250 -116672239 + AluJo SINE Alu 1 299 -13 1042 295 28 28 chr12 27610250 27610325 -116672164 + L1ME3 LINE L1 5237 5311 -904 1883 142 18 0 chr12 27610330 27610612 -116671877 - AluSx SINE Alu -25 287 1 2600 97 66 2 chr12 27610669 27611094 -116671395 - HSMAR2 DNA Mariner 0 1302 851 1074 140 0 6 chr12 27611111 27611268 -116671221 - AluSg/x SINE Alu -20 292 137 5424 108 7 22 chr12 27611269 27611354 -116671135 - HSMAR2 DNA Mariner -453 849 764 2010 147 16 7 chr12 27611354 27611661 -116670828 - AluJb SINE Alu -2 310 1 5424 108 7 22 chr12 27611661 27612436 -116670053 - HSMAR2 DNA Mariner -538 764 2 2044 238 106 21 chr12 27612439 27613254 -116669235 + L1ME3 LINE L1 5340 6223 -8 887 171 0 0 chr12 27613425 27613554 -116668935 + FLAM_C SINE Alu 2 130 -13 279 0 0 0 chr12 27613596 27613627 -116668862 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 313 154 0 0 chr12 27613630 27613682 -116668807 - FLAM_A SINE Alu -25 108 57 899 103 48 0 chr12 27613682 27613808 -116668681 + AluJb SINE Alu 164 295 -17 445 274 61 5 chr12 27614129 27614326 -116668163 - LTR33A LTR ERVL -18 505 298 505 150 0 0 chr12 27614434 27614514 -116667975 - AluJ/FLAM SINE Alu -232 80 1 630 167 46 0 chr12 27614768 27614876 -116667613 + FLAM_C SINE Alu 12 124 -19 24 0 0 0 chr12 27614882 27614906 -116667583 + AT_rich Low_complexity Low_complexity 1 24 0 2156 111 7 0 chr12 27615032 27615329 -116667160 - AluSq SINE Alu -4 309 11 1894 156 17 0 chr12 27615494 27615789 -116666700 - AluSx SINE Alu -12 300 1 289 225 0 0 chr12 27616066 27616137 -116666352 + LTR67 LTR ERVL 487 557 0 2315 108 19 35 chr12 27616310 27616680 -116665809 + THE1B LTR MaLR 1 364 0 1890 129 3 3 chr12 27617074 27617383 -116665106 + AluY SINE Alu 1 309 -2 859 0 44 50 chr12 27617383 27617563 -116664926 + (TA)n Simple_repeat Simple_repeat 2 180 0 294 200 0 0 chr12 27617563 27617623 -116664866 + (CATATA)n Simple_repeat Simple_repeat 1 61 0 225 0 0 0 chr12 27617623 27617648 -116664841 + (TG)n Simple_repeat Simple_repeat 2 26 0 302 306 85 10 chr12 27617652 27617851 -116664638 + LTR16A1 LTR ERVL 213 426 -31 2860 3 0 0 chr12 27617855 27618164 -116664325 - AluYa5 SINE Alu -2 309 1 646 155 0 48 chr12 27618235 27618422 -116664067 + CT-rich Low_complexity Low_complexity 1 178 0 867 124 7 27 chr12 27618430 27618735 -116663754 + (TTC)n Simple_repeat Simple_repeat 1 298 0 380 214 22 11 chr12 27618735 27618824 -116663665 + CT-rich Low_complexity Low_complexity 4 93 0 463 211 19 0 chr12 27618824 27618928 -116663561 - FLAM_A SINE Alu 0 142 37 22 0 0 0 chr12 27620245 27620267 -116662222 + AT_rich Low_complexity Low_complexity 1 22 0 199 267 0 0 chr12 27620819 27620864 -116661625 - L2 LINE L2 0 3313 3269 207 210 37 25 chr12 27620922 27621003 -116661486 + GA-rich Low_complexity Low_complexity 4 85 0 224 222 0 0 chr12 27621726 27621771 -116660718 - MIR SINE MIR 0 262 218 242 342 138 0 chr12 27621812 27621964 -116660525 - MIR SINE MIR -19 243 71 264 335 40 46 chr12 27622168 27622320 -116660169 + MIR3 SINE MIR 35 185 -23 431 204 91 38 chr12 27622335 27622467 -116660022 - L1ME3A LINE L1 -26 6144 6006 527 259 167 11 chr12 27622472 27622742 -116659747 - L1ME3A LINE L1 -181 5989 5678 259 263 113 17 chr12 27623362 27623506 -116658983 + MIR3 SINE MIR 22 186 -22 2269 96 7 3 chr12 27623668 27623971 -116658518 - AluSp SINE Alu -9 304 1 1766 174 7 26 chr12 27624240 27624550 -116657939 - AluJo SINE Alu -7 305 2 372 22 0 0 chr12 27625319 27625364 -116657125 + (TG)n Simple_repeat Simple_repeat 2 46 0 14929 90 12 5 chr12 27626481 27628967 -116653522 - L1PA8 LINE L1 0 6172 3668 342 0 0 0 chr12 27628967 27629005 -116653484 + (TG)n Simple_repeat Simple_repeat 2 39 0 14929 90 12 5 chr12 27629005 27629480 -116653009 - L1PA8 LINE L1 -2504 3668 3198 1548 147 4 0 chr12 27629480 27629711 -116652778 + AluSx SINE Alu 64 295 -17 21 0 0 0 chr12 27630299 27630320 -116652169 + AT_rich Low_complexity Low_complexity 1 21 0 453 252 82 10 chr12 27630411 27630617 -116651872 - L1MC4 LINE L1 -97 7945 7725 1078 42 0 0 chr12 27630685 27630805 -116651684 + AluSp SINE Alu 13 132 -181 2434 74 0 0 chr12 27630807 27631106 -116651383 + AluY SINE Alu 1 299 -12 755 262 109 49 chr12 27631115 27631566 -116650923 - L1MC4 LINE L1 -397 7645 7168 620 135 0 0 chr12 27632545 27632634 -116649855 - AluJ/FLAM SINE Alu -223 89 1 266 340 80 69 chr12 27633335 27633360 -116649129 - L2 LINE L2 -22 3250 3227 2039 147 3 0 chr12 27633360 27633659 -116648830 - AluSx SINE Alu -12 300 1 266 340 80 69 chr12 27633659 27633921 -116648568 - L2 LINE L2 -45 3227 2960 207 0 0 0 chr12 27634610 27634633 -116647856 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 395 264 82 25 chr12 27635171 27635330 -116647159 - MIR SINE MIR -50 212 45 2107 110 6 28 chr12 27635682 27635714 -116646775 - AluSq SINE Alu -2 311 280 351 0 0 0 chr12 27635714 27635753 -116646736 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2107 110 6 28 chr12 27635753 27636038 -116646451 - AluSq SINE Alu -33 280 1 1876 102 117 7 chr12 27637632 27637906 -116644583 - AluSg1 SINE Alu -5 304 1 2058 134 10 3 chr12 27637961 27638266 -116644223 - AluSg SINE Alu -3 307 1 292 239 67 44 chr12 27638412 27638592 -116643897 - L1ME4a LINE L1 -11 6110 5927 339 340 111 0 chr12 27638730 27638892 -116643597 - L1ME4a LINE L1 -405 5716 5537 234 302 0 0 chr12 27638963 27639016 -116643473 + (CACG)n Simple_repeat Simple_repeat 2 54 0 2018 125 0 20 chr12 27639840 27640143 -116642346 - AluSx SINE Alu -15 297 1 969 202 22 0 chr12 27640155 27640333 -116642156 - FRAM SINE Alu -1 175 1 723 299 33 12 chr12 27640335 27640576 -116641913 - MIR SINE MIR -8 254 9 2554 104 14 14 chr12 27641160 27641524 -116640965 - THE1B LTR MaLR 0 364 1 1094 218 33 17 chr12 27642107 27642516 -116639973 + MLT2B1 LTR ERVL 1 466 -54 223 118 78 0 chr12 27642529 27642580 -116639909 + CT-rich Low_complexity Low_complexity 4 58 0 241 179 0 0 chr12 27642580 27642643 -116639846 + MLT2C2 LTR ERVL 420 464 0 25 51 0 0 chr12 27642645 27642684 -116639805 + AT_rich Low_complexity Low_complexity 1 39 0 1588 219 60 7 chr12 27642730 27643164 -116639325 + L1MD3 LINE L1 7529 7985 -10 2347 97 0 3 chr12 27643172 27643470 -116639019 + AluSq SINE Alu 1 297 -16 291 130 0 0 chr12 27643795 27643841 -116638648 + L1MB3 LINE L1 6099 6144 -39 1485 148 48 14 chr12 27643865 27644155 -116638334 - L1MA6 LINE L1 -2 6298 5999 737 206 85 0 chr12 27644901 27645090 -116637399 - MER3 DNA MER1_type -4 205 1 865 128 55 8 chr12 27645296 27645519 -116636970 - L1MA9 LINE L1 -5 6307 6053 203 218 168 59 chr12 27646219 27646320 -116636169 + MIR SINE MIR 42 153 -109 15111 47 1 1 chr12 27646840 27648826 -116633663 + L1P LINE L1 1135 3121 -3025 556 330 152 35 chr12 27649504 27650016 -116632473 + L2 LINE L2 2337 2908 -406 363 302 208 0 chr12 27650184 27650343 -116632146 - MER91A DNA MER1_type -1 195 4 622 99 0 0 chr12 27651302 27651393 -116631096 - MLT1C LTR MaLR -376 91 1 225 151 0 0 chr12 27651585 27651638 -116630851 + CT-rich Low_complexity Low_complexity 1 53 0 1948 145 3 3 chr12 27652147 27652465 -116630024 - AluJb SINE Alu 0 318 1 273 29 0 0 chr12 27652742 27652776 -116629713 + (CAT)n Simple_repeat Simple_repeat 1 34 0 1731 186 17 13 chr12 27653571 27653872 -116628617 + AluJb SINE Alu 1 302 -10 207 288 51 0 chr12 27654291 27654350 -116628139 + L2 LINE L2 3205 3266 -6 1171 196 0 2 chr12 27654473 27654770 -116627719 + MER2 DNA MER2_type 1 344 -1 2780 124 59 40 chr12 27655219 27655815 -116626674 + MER4B LTR ERV1 1 774 -5 1884 142 45 3 chr12 27656119 27656449 -116626040 + MER2 DNA MER2_type 1 344 0 242 220 34 0 chr12 27656590 27656649 -116625840 + L2 LINE L2 2405 2465 -849 321 215 25 0 chr12 27656731 27656810 -116625679 + L1ME2 LINE L1 6076 6156 -8 260 266 28 9 chr12 27656830 27656939 -116625550 + (TA)n Simple_repeat Simple_repeat 2 112 0 1038 261 53 57 chr12 27656951 27657079 -116625410 + L2 LINE L2 2557 2684 -629 2508 61 3 6 chr12 27657079 27657391 -116625098 - AluY SINE Alu 0 311 1 1038 261 53 57 chr12 27657391 27657781 -116624708 + L2 LINE L2 2684 3068 -245 631 232 197 10 chr12 27657821 27658019 -116624470 + MIR SINE MIR 4 238 -24 277 233 60 45 chr12 27658037 27658170 -116624319 + L2 LINE L2 3098 3232 -81 293 257 0 43 chr12 27658246 27658316 -116624173 + L2 LINE L2 3247 3313 0 1083 187 98 0 chr12 27658369 27658572 -116623917 - MER58A DNA MER1_type -1 223 1 408 241 89 9 chr12 27659597 27659709 -116622780 - MER5C DNA MER1_type -201 123 3 352 204 120 56 chr12 27659828 27659936 -116622553 + L2 LINE L2 3188 3302 -11 1804 169 7 3 chr12 27660592 27660899 -116621590 + AluJb SINE Alu 1 308 -4 1764 153 51 4 chr12 27662166 27662441 -116620048 + AluJb SINE Alu 1 288 -24 743 211 69 18 chr12 27662449 27662724 -116619765 - L1MC5 LINE L1 -71 7890 7602 1905 140 35 3 chr12 27662750 27663036 -116619453 - AluSx SINE Alu -17 295 1 495 182 34 0 chr12 27663055 27663143 -116619346 + FLAM_A SINE Alu 34 124 -18 556 230 9 0 chr12 27663618 27663731 -116618758 - MER5A DNA MER1_type -15 174 61 2143 123 0 23 chr12 27663741 27664050 -116618439 - AluSx SINE Alu 0 312 11 201 147 0 0 chr12 27664050 27664084 -116618405 - MER5A DNA MER1_type -117 72 39 1502 118 8 0 chr12 27664152 27664389 -116618100 - L1MA3 LINE L1 -3 6302 6064 1919 147 13 19 chr12 27665402 27665716 -116616773 - AluJo SINE Alu 0 312 1 422 333 113 5 chr12 27666074 27666296 -116616193 - LTR16C LTR ERVL -121 370 125 690 228 181 20 chr12 27666588 27666870 -116615619 - L1ME2 LINE L1 -69 6097 5770 403 238 66 13 chr12 27667180 27667331 -116615158 - L1M4 LINE L1 -3382 2764 2606 316 215 86 0 chr12 27667367 27667460 -116615029 + L1MEc LINE L1 2148 2248 -4148 791 240 107 8 chr12 27667500 27667863 -116614626 - L1M4 LINE L1 -3608 2538 2140 1567 98 18 0 chr12 27667887 27668112 -116614377 - L1PB3 LINE L1 -3 6151 5923 461 176 0 22 chr12 27668274 27668365 -116614124 + FLAM_A SINE Alu 43 131 -11 360 308 128 31 chr12 27668366 27668561 -116613928 - L1ME2 LINE L1 -634 5530 5317 183 235 35 96 chr12 27668715 27668830 -116613659 + L2 LINE L2 3103 3210 -103 * 225 234 13 13 chr12 27668828 27668905 -116613584 + MER5C DNA MER1_type 71 147 -177 35857 80 9 18 chr12 27669262 27675463 -116607026 - L1PA6 LINE L1 -7 6147 11 263 295 104 42 chr12 27676250 27676443 -116606046 + MIR SINE MIR 35 239 -23 208 224 0 20 chr12 27676484 27676533 -116605956 + (TG)n Simple_repeat Simple_repeat 2 49 0 259 146 218 0 chr12 27677309 27677364 -116605125 - MER5A DNA MER1_type -114 75 9 828 163 45 67 chr12 27677451 27677629 -116604860 - FAM SINE Alu -1 174 1 212 309 68 34 chr12 27677634 27677841 -116604648 + L2 LINE L2 2235 2448 -866 846 63 102 8 chr12 27678920 27679047 -116603442 - MER85 DNA T2_type 0 139 1 291 281 34 0 chr12 27679277 27679366 -116603123 - LTR33 LTR ERVL -425 96 5 483 18 0 0 chr12 27679366 27679422 -116603067 + (CA)n Simple_repeat Simple_repeat 1 56 0 26 0 0 0 chr12 27679608 27679634 -116602855 + AT_rich Low_complexity Low_complexity 1 26 0 1039 242 43 62 chr12 27679652 27680069 -116602420 + MLT1I LTR MaLR 1 409 0 194 286 18 0 chr12 27680069 27680125 -116602364 + L3b LINE CR1 1526 1582 -1 2265 104 7 3 chr12 27680609 27680908 -116601581 - AluSx SINE Alu -12 300 1 541 270 101 0 chr12 27681110 27681288 -116601201 - L3 LINE CR1 -745 832 637 632 158 0 0 chr12 27681652 27681753 -116600736 + AluJ/FLAM SINE Alu 1 101 -211 1605 180 22 33 chr12 27681856 27682218 -116600271 + MER63 DNA MER1_type 703 1060 0 477 252 46 136 chr12 27682328 27682461 -116600028 - LTR33 LTR ERVL -9 512 369 362 160 0 85 chr12 27682461 27682555 -116599934 + L1MB8 LINE L1 6087 6172 -6 477 252 46 136 chr12 27682555 27682810 -116599679 - LTR33 LTR ERVL -152 369 159 477 258 49 72 chr12 27682949 27683213 -116599276 - MIR SINE MIR 0 262 5 2374 85 10 0 chr12 27683225 27683531 -116598958 - AluSq SINE Alu -4 309 1 296 233 19 19 chr12 27683566 27683669 -116598820 + L1MC/D LINE L1 5704 5806 -2002 1219 150 40 22 chr12 27683716 27683919 -116598570 + L1MB3 LINE L1 5496 5705 -586 2351 126 54 54 chr12 27683919 27684089 -116598400 - MER65C LTR ERV1 0 461 292 1928 157 3 7 chr12 27684089 27684394 -116598095 - AluJb SINE Alu -8 304 1 2351 126 54 54 chr12 27684394 27684684 -116597805 - MER65C LTR ERV1 -168 293 1 1219 150 40 22 chr12 27684684 27684706 -116597783 + L1MB3 LINE L1 5705 5725 -566 12214 113 5 44 chr12 27684714 27687164 -116595325 + L1P3 LINE L1 2 2447 -4014 1347 250 37 61 chr12 27687847 27688458 -116594031 + L2 LINE L2 2704 3311 -2 204 216 0 0 chr12 27689105 27689142 -116593347 + CT-rich Low_complexity Low_complexity 3 39 0 1288 173 16 4 chr12 27689147 27689401 -116593088 + L1MB3 LINE L1 5925 6181 -2 487 306 47 10 chr12 27689562 27689755 -116592734 + MIR SINE MIR 27 226 -36 182 245 0 41 chr12 27691547 27691596 -116590893 + L2 LINE L2 3226 3272 0 264 284 0 11 chr12 27692624 27692712 -116589777 + L1MC5 LINE L1 7825 7911 -50 194 184 0 26 chr12 27692917 27692955 -116589534 + L3 LINE CR1 1540 1576 -1 249 103 0 0 chr12 27693883 27693922 -116588567 + tRNA-Ile-ATT tRNA tRNA 1 39 -38 230 324 184 68 chr12 27694128 27694464 -116588025 - L2 LINE L2 0 3272 2898 180 0 0 0 chr12 27694915 27694935 -116587554 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 993 203 42 0 chr12 27694937 27695096 -116587393 - AluJo SINE Alu -28 284 114 246 32 0 0 chr12 27695096 27695127 -116587362 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 993 203 42 0 chr12 27695127 27695159 -116587330 - AluJo SINE Alu -198 114 85 351 0 0 0 chr12 27695204 27695243 -116587246 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 688 144 63 0 chr12 27695243 27695354 -116587135 - FLAM_C SINE Alu -25 118 1 742 231 0 0 chr12 27696865 27696995 -116585494 - FLAM_A SINE Alu -3 130 1 24 0 0 0 chr12 27697005 27697029 -116585460 + AT_rich Low_complexity Low_complexity 1 24 0 6463 99 27 1 chr12 27698302 27699290 -116583199 + L1MA2 LINE L1 5291 6304 0 545 277 77 20 chr12 27699375 27699570 -116582919 + MIR SINE MIR 33 238 -24 13261 26 5 0 chr12 27699724 27702411 -116580078 - L1PA4 LINE L1 -3 6152 3455 2122 127 10 0 chr12 27702411 27702711 -116579778 - AluSq SINE Alu -10 303 1 212 77 26 0 chr12 27703016 27703055 -116579434 + (TC)n Simple_repeat Simple_repeat 1 40 0 257 220 17 0 chr12 27703618 27703677 -116578812 + MIR SINE MIR 57 116 -146 189 0 0 0 chr12 27703677 27703698 -116578791 + (T)n Simple_repeat Simple_repeat 1 21 0 791 187 0 15 chr12 27704133 27704267 -116578222 - FLAM_C SINE Alu -1 132 1 1252 139 0 5 chr12 27706169 27706356 -116576133 + AluSq SINE Alu 1 186 -127 2198 100 10 3 chr12 27706901 27707202 -116575287 - AluSc SINE Alu -6 303 1 2171 147 0 0 chr12 27709092 27709404 -116573085 - AluSx SINE Alu 0 312 1 2209 119 3 3 chr12 27709481 27709792 -116572697 - AluSx SINE Alu -1 311 1 21 0 0 0 chr12 27710660 27710681 -116571808 + AT_rich Low_complexity Low_complexity 1 21 0 313 297 42 8 chr12 27711297 27711415 -116571074 - MIR SINE MIR -68 140 19 1823 159 36 0 chr12 27711705 27712006 -116570483 + AluSx SINE Alu 1 312 0 467 306 50 68 chr12 27712494 27712831 -116569658 + MLT1I LTR MaLR 79 409 0 2104 135 0 13 chr12 27713128 27713439 -116569050 - AluSx SINE Alu -5 307 1 22 0 0 0 chr12 27713439 27713461 -116569028 + AT_rich Low_complexity Low_complexity 1 22 0 582 76 17 136 chr12 27713480 27713598 -116568891 + AluSg/x SINE Alu 197 300 -12 1611 238 145 4 chr12 27713600 27714146 -116568343 - LTR50 LTR ERVL -89 706 84 710 268 7 0 chr12 27714166 27714319 -116568170 + MER91A DNA MER1_type 33 186 -10 661 125 0 0 chr12 27714389 27714485 -116568004 - FRAM SINE Alu -16 160 65 925 170 20 7 chr12 27714585 27714738 -116567751 + FRAM SINE Alu 5 159 -17 1999 137 3 3 chr12 27714819 27715111 -116567378 + AluJb SINE Alu 1 292 -20 422 306 7 35 chr12 27715779 27715923 -116566566 + L2 LINE L2 3133 3272 0 419 246 57 37 chr12 27717641 27717885 -116564604 - L1ME4a LINE L1 -1 6120 5872 30 45 0 0 chr12 27717895 27717939 -116564550 + AT_rich Low_complexity Low_complexity 1 44 0 2144 143 0 0 chr12 27718004 27718305 -116564184 - AluSx SINE Alu -11 301 1 826 211 124 18 chr12 27718451 27718669 -116563820 - MIR SINE MIR -9 253 13 6412 167 23 7 chr12 27719483 27721106 -116561383 + L1PA16 LINE L1 3972 5617 -549 3471 108 2 0 chr12 27721206 27721705 -116560784 + L1PA16 LINE L1 5657 6156 -10 245 231 269 0 chr12 27722705 27722813 -116559676 - L2 LINE L2 0 3272 3136 299 340 197 7 chr12 27723003 27723150 -116559339 - MER91A DNA MER1_type -19 177 3 506 270 15 29 chr12 27723169 27723306 -116559183 - MIR SINE MIR -108 154 20 1869 131 10 28 chr12 27723470 27723787 -116558702 - AluJb SINE Alu 0 312 1 625 301 45 25 chr12 27724095 27724454 -116558035 - ERVL LTR ERVL -2060 3704 3339 1377 301 94 13 chr12 27724593 27725218 -116557271 - ERVL LTR ERVL -2139 2857 2182 343 327 7 7 chr12 27725620 27725770 -116556719 + LTR16C LTR ERVL 317 466 -25 1991 133 40 51 chr12 27726008 27726205 -116556284 - L1MA7 LINE L1 -128 6163 5965 1795 128 0 0 chr12 27726205 27726448 -116556041 - AluSx SINE Alu -69 243 1 1991 133 40 51 chr12 27726448 27726701 -116555788 - L1MA7 LINE L1 -326 5965 5718 20827 85 6 16 chr12 27726715 27730724 -116551765 - L1PA7 LINE L1 -2 6152 2184 2151 145 0 3 chr12 27781132 27781443 -116501046 + AluSx SINE Alu 1 310 -2 209 204 20 20 chr12 27783044 27783093 -116499396 + L2 LINE L2 3263 3311 -2 475 284 24 8 chr12 27783830 27783957 -116498532 - MIR SINE MIR -74 188 60 242 163 20 20 chr12 27784063 27784112 -116498377 + L2 LINE L2 3263 3311 -2 649 228 68 57 chr12 27785437 27785724 -116496765 + L1ME4a LINE L1 5534 5827 -294 2328 93 0 0 chr12 27785724 27786025 -116496464 + AluY SINE Alu 1 301 -10 649 228 68 57 chr12 27786025 27786088 -116496401 + L1ME4a LINE L1 5827 5888 -233 242 236 0 0 chr12 27786145 27786200 -116496289 + L1ME4a LINE L1 5994 6048 -73 203 291 27 95 chr12 27787099 27787247 -116495242 + L2 LINE L2 2915 3052 -220 1768 108 0 88 chr12 27787292 27787588 -116494901 - AluJb SINE Alu -23 289 20 781 258 16 0 chr12 27787610 27787796 -116494693 - MIR SINE MIR 0 262 74 996 35 0 0 chr12 27787796 27787910 -116494579 - AluY SINE Alu -11 300 187 293 317 106 6 chr12 27787993 27788148 -116494341 - MIR3 SINE MIR -21 187 15 1648 110 59 0 chr12 27788673 27788946 -116493543 + L1MA1 LINE L1 6014 6302 0 21 82 0 0 chr12 27788946 27788995 -116493494 + AT_rich Low_complexity Low_complexity 1 49 0 27 49 0 0 chr12 27789659 27789700 -116492789 + AT_rich Low_complexity Low_complexity 1 41 0 295 233 193 15 chr12 27793604 27793742 -116488747 - MIR SINE MIR -61 147 36 358 268 63 7 chr12 27793852 27793994 -116488495 - MLT1L LTR MaLR -13 602 453 517 102 159 11 chr12 27793995 27794083 -116488406 + FLAM_A SINE Alu 14 114 -28 2084 87 0 108 chr12 27794273 27794608 -116487881 - AluSx SINE Alu -13 299 1 481 229 133 33 chr12 27794620 27794830 -116487659 - MLT1L LTR MaLR -326 289 59 2039 112 24 0 chr12 27795406 27795700 -116486789 - AluSx SINE Alu -11 301 1 368 271 157 18 chr12 27796110 27796276 -116486213 + MER5A DNA MER1_type 1 189 0 328 206 16 0 chr12 27796371 27796434 -116486055 + L2 LINE L2 3250 3313 0 2088 108 13 16 chr12 27796649 27796954 -116485535 + AluSx SINE Alu 1 304 -8 2079 107 0 0 chr12 27797313 27797615 -116484874 - AluY SINE Alu 0 302 1 240 113 19 38 chr12 27797634 27797687 -116484802 - L1MB2 LINE L1 -35 6136 6085 247 25 50 0 chr12 27797847 27797887 -116484602 + (TTG)n Simple_repeat Simple_repeat 1 42 0 298 307 38 14 chr12 27798681 27798787 -116483702 + MIR SINE MIR 42 147 -80 345 268 69 135 chr12 27799851 27800518 -116481971 - L1M2 LINE L1 -5519 1330 524 650 214 53 64 chr12 27801349 27801536 -116480953 + MIR SINE MIR 64 248 -14 22 35 0 0 chr12 27801818 27801847 -116480642 + AT_rich Low_complexity Low_complexity 1 29 0 453 245 200 7 chr12 27801937 27802085 -116480404 - MIR SINE MIR -62 146 5 228 86 0 0 chr12 27802283 27802318 -116480171 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 217 233 30 30 chr12 27802770 27802903 -116479586 + GA-rich Low_complexity Low_complexity 5 137 0 2323 83 17 7 chr12 27803751 27804053 -116478436 + AluSx SINE Alu 1 305 -7 294 322 13 53 chr12 27804545 27804697 -116477792 + L2 LINE L2 2890 3035 -237 636 305 16 16 chr12 27804743 27804930 -116477559 + MIR SINE MIR 31 217 -45 181 306 194 48 chr12 27804965 27805217 -116477272 + L2 LINE L2 3025 3313 0 2552 113 28 7 chr12 27806037 27806472 -116476017 - L1PA13 LINE L1 -3 6160 5717 243 0 0 0 chr12 27807194 27807221 -116475268 + (T)n Simple_repeat Simple_repeat 1 27 0 1606 209 86 16 chr12 27807483 27807914 -116474575 - L1MC4a LINE L1 0 7808 7348 1215 134 5 11 chr12 27807952 27808139 -116474350 - AluJb SINE Alu -8 304 119 265 292 14 111 chr12 27808224 27808330 -116474159 + L2 LINE L2 3143 3233 -39 1699 166 41 17 chr12 27808330 27808620 -116473869 - AluJo SINE Alu -15 297 1 265 292 14 111 chr12 27808620 27808657 -116473832 + L2 LINE L2 3233 3272 0 21 0 0 0 chr12 27809157 27809178 -116473311 + AT_rich Low_complexity Low_complexity 1 21 0 3884 164 22 28 chr12 27809534 27810748 -116471741 - L1P5 LINE L1 -555 5596 4403 3800 70 14 8 chr12 27810748 27811266 -116471223 + L1PB1 LINE L1 5630 6150 -1 206 351 98 11 chr12 27811498 27811672 -116470817 - L2 LINE L2 -384 2930 2742 1725 144 53 51 chr12 27813221 27813439 -116469050 - MER46B DNA MER2_type -2495 236 140 6306 185 28 21 chr12 27813439 27815633 -116466856 - L1PA16 LINE L1 -5 6161 3958 1725 144 53 51 chr12 27815633 27815769 -116466720 - MER46B DNA MER2_type -2591 140 6 390 345 34 8 chr12 27815781 27816045 -116466444 + L1ME4a LINE L1 5562 5832 -289 2548 173 44 26 chr12 27816108 27816651 -116465838 - MER74A LTR ERVL -1 557 5 1868 145 7 7 chr12 27816728 27817024 -116465465 + AluJo SINE Alu 1 296 -16 2198 117 0 0 chr12 27817041 27817340 -116465149 + AluSx SINE Alu 3 301 -11 398 181 55 87 chr12 27818155 27818282 -116464207 + MIR SINE MIR 61 183 -79 255 298 104 113 chr12 27818838 27819261 -116463228 + L2 LINE L2 2836 3254 -18 260 333 72 42 chr12 27819493 27819757 -116462732 - L3 LINE CR1 -690 887 616 288 343 69 0 chr12 27820483 27820585 -116461904 - L2 LINE L2 -6 3307 3199 2296 149 49 10 chr12 27820848 27821257 -116461232 - MSTB1 LTR MaLR -3 429 5 2241 88 0 7 chr12 27821456 27821764 -116460725 + AluSx SINE Alu 1 306 0 1617 176 9 46 chr12 27822211 27822534 -116459955 + AluJb SINE Alu 1 311 -1 337 257 0 0 chr12 27822534 27822604 -116459885 - MIR3 SINE MIR -46 162 93 221 268 18 0 chr12 27822826 27822882 -116459607 + L3 LINE CR1 403 459 -1118 382 262 177 0 chr12 27823094 27823235 -116459254 - MIR SINE MIR 0 262 97 1314 247 8 41 chr12 27823238 27823631 -116458858 + MLT2C1 LTR ERVL 18 397 0 957 180 114 9 chr12 27823804 27824015 -116458474 + MIR SINE MIR 16 248 -14 2154 141 0 3 chr12 27825777 27826089 -116456400 + AluSx SINE Alu 1 311 -1 8339 152 10 14 chr12 27826498 27828234 -116454255 + L1P4 LINE L1 3751 5473 -695 1223 66 0 0 chr12 27828234 27828386 -116454103 + AluY SINE Alu 144 295 -16 1416 119 31 0 chr12 27828387 27828613 -116453876 + L1P4 LINE L1 5481 5713 -450 1043 263 50 3 chr12 27828746 27829122 -116453367 - L1ME LINE L1 -521 5649 5256 7498 30 0 1 chr12 27829271 27830733 -116451756 - L1PA4 LINE L1 -1 6154 4693 2206 119 3 0 chr12 27830791 27831094 -116451395 - AluSq SINE Alu -9 304 1 1492 181 19 45 chr12 27831361 27831531 -116450958 - AluJb SINE Alu -10 302 129 198 0 0 0 chr12 27831531 27831553 -116450936 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2051 113 7 4 chr12 27831554 27831828 -116450661 - AluSx SINE Alu -36 276 2 1492 181 19 45 chr12 27831828 27831965 -116450524 - AluJb SINE Alu -182 130 1 563 260 226 6 chr12 27832193 27832370 -116450119 - MIR SINE MIR -17 245 30 2194 126 0 0 chr12 27832846 27833147 -116449342 - AluSx SINE Alu -7 305 5 317 285 44 57 chr12 27834585 27834743 -116447746 + MIR SINE MIR 107 262 0 181 152 43 65 chr12 27834956 27835002 -116447487 + MIR SINE MIR 107 151 -111 2043 94 65 0 chr12 27835125 27835401 -116447088 + AluSc SINE Alu 1 294 -15 185 308 55 104 chr12 27835983 27836386 -116446103 + L2 LINE L2 2520 2902 -412 299 252 52 105 chr12 27836406 27836495 -116445994 + L2 LINE L2 3115 3207 -106 2172 99 24 7 chr12 27836495 27836789 -116445700 - AluSq SINE Alu -12 301 3 299 252 52 105 chr12 27836789 27836909 -116445580 + L2 LINE L2 3207 3313 0 588 238 26 16 chr12 27837257 27837450 -116445039 - L1MC5 LINE L1 -48 7913 7719 516 168 32 11 chr12 27838417 27838512 -116443977 + FLAM_C SINE Alu 33 129 -14 270 0 0 0 chr12 27838545 27838575 -116443914 + (CA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr12 27838813 27838834 -116443655 + AT_rich Low_complexity Low_complexity 1 21 0 230 154 19 19 chr12 27840183 27840235 -116442254 + Tigger5 DNA MER2_type 2254 2305 -18 346 194 0 0 chr12 27840245 27840307 -116442182 - Tigger5 DNA MER2_type -2235 88 27 494 139 0 12 chr12 27840330 27840416 -116442073 + Tigger5 DNA MER2_type 2238 2322 -1 1705 95 0 9 chr12 27840595 27840827 -116441662 + AluSq SINE Alu 1 230 -83 31 0 0 0 chr12 27840827 27840858 -116441631 + AT_rich Low_complexity Low_complexity 1 31 0 359 285 117 39 chr12 27841080 27841259 -116441230 + MIR SINE MIR 70 262 0 245 333 48 9 chr12 27841519 27841624 -116440865 + L3b LINE CR1 1294 1402 -181 676 193 127 54 chr12 27845604 27845770 -116436719 - MIR SINE MIR -48 214 37 519 262 49 0 chr12 27846139 27846261 -116436228 - FLAM_C SINE Alu -4 129 2 2004 147 10 0 chr12 27846273 27846572 -116435917 - AluJb SINE Alu -10 302 1 2243 92 3 0 chr12 27847789 27848096 -116434393 - AluSp SINE Alu 0 308 1 810 222 62 23 chr12 27848993 27849169 -116433320 - MIR SINE MIR -25 237 55 2320 86 10 0 chr12 27849177 27849479 -116433010 + AluY SINE Alu 1 305 -6 388 286 67 62 chr12 27849800 27849978 -116432511 - MIR SINE MIR -50 212 34 2541 48 0 0 chr12 27850446 27850737 -116431752 - AluY SINE Alu -20 291 1 272 347 48 81 chr12 27851313 27851584 -116430905 - L2 LINE L2 -34 3238 2977 241 257 106 78 chr12 27852025 27852204 -116430285 - L2 LINE L2 -108 3164 2981 480 273 48 73 chr12 27853971 27854136 -116428353 - L3 LINE CR1 -12 1565 1405 732 338 149 22 chr12 27854136 27855011 -116427478 + L2 LINE L2 2109 3091 -181 204 176 0 0 chr12 27855098 27855132 -116427357 - MIR SINE MIR -9 253 220 408 230 182 14 chr12 27855224 27855372 -116427117 - L3 LINE CR1 -317 1260 1088 316 277 31 94 chr12 27856173 27856323 -116426166 - L3 LINE CR1 -507 1070 929 2107 120 20 0 chr12 27856323 27856615 -116425874 - AluSx SINE Alu -14 298 1 608 196 0 0 chr12 27856679 27856776 -116425713 - FLAM_C SINE Alu -19 124 28 2171 93 0 14 chr12 27856797 27857087 -116425402 - AluSx SINE Alu -26 286 1 574 297 209 42 chr12 27857124 27857764 -116424725 - L3 LINE CR1 -713 864 118 914 247 189 12 chr12 27858893 27859353 -116423136 + L2 LINE L2 2747 3313 0 281 257 50 40 chr12 27860141 27860238 -116422251 + MIR SINE MIR 58 154 -54 268 267 0 13 chr12 27860302 27860377 -116422112 - MIR SINE MIR -1 261 188 188 220 40 0 chr12 27860406 27860456 -116422033 + MIR SINE MIR 211 262 0 23 68 0 0 chr12 27860768 27860812 -116421677 + AT_rich Low_complexity Low_complexity 1 44 0 1018 168 0 12 chr12 27861017 27861184 -116421305 + FRAM SINE Alu 1 165 -1 2076 124 28 0 chr12 27861259 27861549 -116420940 - AluSx SINE Alu -14 298 1 240 314 121 32 chr12 27862151 27862275 -116420214 - L2 LINE L2 -6 3307 3173 347 256 13 0 chr12 27862978 27863056 -116419433 - MER2 DNA MER2_type 0 345 267 1371 157 0 0 chr12 27863083 27863293 -116419196 - MER2 DNA MER2_type -135 210 1 538 283 98 37 chr12 27863550 27863957 -116418532 - L1ME4a LINE L1 0 6121 5690 326 192 14 27 chr12 27864010 27864083 -116418406 + L2 LINE L2 3241 3312 -1 255 116 0 23 chr12 27865349 27865392 -116417097 - MER103 DNA DNA -123 43 2 769 188 10 57 chr12 27865759 27865951 -116416538 + AluJo SINE Alu 1 183 -129 2866 3 0 0 chr12 27866237 27866546 -116415943 - AluYa5 SINE Alu -2 309 1 753 241 127 0 chr12 27866583 27866803 -116415686 + MIR SINE MIR 3 250 -12 2030 107 7 3 chr12 27866914 27867205 -116415284 + AluSx SINE Alu 1 292 -20 505 271 142 56 chr12 27867554 27868004 -116414485 + L1ME LINE L1 5293 5781 -340 645 304 75 0 chr12 27868050 27868251 -116414238 + MIR SINE MIR 47 262 0 262 256 0 61 chr12 27868461 27868543 -116413946 - MIR SINE MIR -3 259 183 386 266 184 0 chr12 27868628 27868744 -116413745 - MIR SINE MIR -67 141 20 293 266 310 0 chr12 27869461 27869574 -116412915 + MIR3 SINE MIR 33 180 -28 24 32 0 0 chr12 27870403 27870434 -116412055 + AT_rich Low_complexity Low_complexity 1 31 0 23 68 0 0 chr12 27870520 27870564 -116411925 + AT_rich Low_complexity Low_complexity 1 44 0 237 232 50 20 chr12 27871459 27871558 -116410931 - L1ME4a LINE L1 0 6121 6020 455 280 142 25 chr12 27871602 27871927 -116410562 - L1ME4a LINE L1 -199 5922 5560 2145 101 3 36 chr12 27872263 27872569 -116409920 - AluSx SINE Alu -14 298 3 203 156 0 0 chr12 27872811 27872843 -116409646 + CT-rich Low_complexity Low_complexity 1 32 0 235 272 24 40 chr12 27872843 27872968 -116409521 - L1ME4a LINE L1 -1121 5025 4903 1919 133 21 7 chr12 27873054 27873340 -116409149 - AluSx SINE Alu -22 290 1 41 78 0 0 chr12 27873802 27873892 -116408597 + AT_rich Low_complexity Low_complexity 1 90 0 24 0 0 0 chr12 27874326 27874350 -116408139 + AT_rich Low_complexity Low_complexity 1 24 0 596 274 54 62 chr12 27875279 27875520 -116406969 - MIR SINE MIR -13 249 11 297 278 82 0 chr12 27875517 27875614 -116406875 - MIR SINE MIR -72 190 86 * 457 239 71 30 chr12 27875845 27876050 -116406439 - Charlie8 DNA MER1_type -1038 1379 84 211 264 11 35 chr12 27876219 27876306 -116406183 + MIR SINE MIR 168 252 -10 277 256 124 16 chr12 27876621 27876742 -116405747 + L2 LINE L2 3179 3312 -1 889 209 17 0 chr12 27878105 27878277 -116404212 - FAM SINE Alu 0 175 1 407 196 14 119 chr12 27879327 27879399 -116403090 - MER103 DNA DNA -28 138 87 2059 109 53 0 chr12 27879399 27879683 -116402806 + AluSx SINE Alu 1 299 -13 407 196 14 119 chr12 27879683 27879753 -116402736 - MER103 DNA DNA -79 87 11 1189 177 97 66 chr12 27879871 27880159 -116402330 - AluJb SINE Alu -4 298 2 21 57 0 0 chr12 27880309 27880344 -116402145 + AT_rich Low_complexity Low_complexity 1 35 0 223 398 0 23 chr12 27880540 27880628 -116401861 - MIR SINE MIR -104 104 19 202 291 0 0 chr12 27881237 27881292 -116401197 + MIR SINE MIR 158 212 -50 255 243 9 108 chr12 27882091 27882202 -116400287 + MER102a DNA MER1_type 221 320 -10 2125 95 0 14 chr12 27883327 27883611 -116398878 + AluSx SINE Alu 12 291 -21 296 339 138 28 chr12 27884045 27884372 -116398117 - L2 LINE L2 -557 2757 2395 370 259 157 0 chr12 27884389 27884555 -116397934 + L1MEd LINE L1 1043 1234 -4971 491 284 80 60 chr12 27884710 27885160 -116397329 + L1MEd LINE L1 1869 2327 -4069 2303 78 0 7 chr12 27886425 27886720 -116395769 - AluY SINE Alu -18 293 1 224 213 38 75 chr12 27886821 27886901 -116395588 - MIR SINE MIR -128 134 58 23 0 0 0 chr12 27887263 27887286 -116395203 + AT_rich Low_complexity Low_complexity 1 23 0 646 282 139 40 chr12 27887679 27887899 -116394590 + L2 LINE L2 2565 2762 -510 2297 51 41 17 chr12 27887899 27888193 -116394296 + AluY SINE Alu 1 301 -10 646 282 139 40 chr12 27888193 27888379 -116394110 + L2 LINE L2 2762 3012 -260 749 200 0 8 chr12 27888388 27888518 -116393971 + FRAM SINE Alu 1 127 -49 303 282 316 19 chr12 27888526 27888732 -116393757 + L2 LINE L2 3006 3272 0 1902 159 13 3 chr12 27889139 27889440 -116393049 + AluJb SINE Alu 2 305 -7 477 216 9 9 chr12 27889966 27890077 -116392412 - Charlie8 DNA MER1_type -1865 552 442 23 33 0 0 chr12 27890092 27890122 -116392367 + AT_rich Low_complexity Low_complexity 1 30 0 241 375 12 0 chr12 27890358 27890438 -116392051 - Charlie8 DNA MER1_type -2336 81 1 333 0 0 0 chr12 27891873 27891910 -116390579 + (CA)n Simple_repeat Simple_repeat 2 38 0 2052 81 55 0 chr12 27891914 27892185 -116390304 - AluSq SINE Alu -27 286 1 2214 81 21 0 chr12 27893701 27893985 -116388504 + AluSq SINE Alu 1 290 -23 679 155 11 0 chr12 27893985 27894159 -116388330 + (TA)n Simple_repeat Simple_repeat 1 176 0 1363 190 75 70 chr12 27894535 27894920 -116387569 - MLT1B LTR MaLR 0 390 4 445 293 144 17 chr12 27895124 27895305 -116387184 - L2 LINE L2 -1945 1369 1166 237 343 89 0 chr12 27895310 27895456 -116387033 - L2 LINE L2 -2967 347 189 771 174 252 16 chr12 27895655 27895897 -116386592 + MER33 DNA MER1_type 25 323 -1 2269 89 0 3 chr12 27897039 27897330 -116385159 - AluSc SINE Alu -19 290 1 2000 252 89 48 chr12 27899587 27899675 -116382814 - L1ME3A LINE L1 -219 5951 5868 183 42 0 0 chr12 27899675 27899699 -116382790 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1495 184 36 22 chr12 27899708 27899985 -116382504 - AluJo SINE Alu -31 281 1 2000 252 89 48 chr12 27899985 27900785 -116381704 - L1ME3A LINE L1 -309 5861 5095 1589 194 24 58 chr12 27900785 27901161 -116381328 - MLT1A1 LTR MaLR -2 363 1 2000 252 89 48 chr12 27901161 27902091 -116380398 - L1ME3A LINE L1 -1075 5095 4037 745 269 33 33 chr12 27902093 27902424 -116380065 - L1ME3A LINE L1 -2230 3916 3586 1135 275 111 18 chr12 27902433 27903363 -116379126 - L1ME3A LINE L1 -2677 3469 2454 421 287 102 28 chr12 27903539 27903793 -116378696 + L1ME4a LINE L1 5599 5871 -250 3122 139 57 9 chr12 27903810 27904335 -116378154 - MER44D DNA MER2_type 0 605 1 308 192 39 0 chr12 27904620 27904724 -116377765 + (TA)n Simple_repeat Simple_repeat 1 108 0 1981 139 7 0 chr12 27904728 27905016 -116377473 - AluSx SINE Alu -22 290 1 473 189 160 0 chr12 27905867 27905973 -116376516 + FLAM_A SINE Alu 1 123 -10 302 333 9 19 chr12 27906740 27906845 -116375644 - MIR3 SINE MIR -31 177 74 2442 87 0 3 chr12 27907468 27907778 -116374711 - AluSc SINE Alu 0 309 1 184 320 27 27 chr12 27907826 27907901 -116374588 - L2 LINE L2 -10 3262 3188 204 310 35 0 chr12 27908014 27908072 -116374417 - L2 LINE L2 -225 3047 2988 917 164 0 7 chr12 27908075 27908221 -116374268 + FRAM SINE Alu 1 144 -32 279 377 71 15 chr12 27908277 27908545 -116373944 - L2 LINE L2 -338 2976 2694 3252 171 30 39 chr12 27908608 27908856 -116373633 - L1MB4 LINE L1 -17 6163 5914 1882 129 0 8 chr12 27908856 27909120 -116373369 + AluSx SINE Alu 40 301 -11 3252 171 30 39 chr12 27909120 27909541 -116372948 - L1MB4 LINE L1 -266 5914 5498 2534 69 0 0 chr12 27909541 27909845 -116372644 - AluY SINE Alu -7 304 1 3252 171 30 39 chr12 27909845 27909901 -116372588 - L1MB4 LINE L1 -682 5498 5443 508 336 136 35 chr12 27909912 27910510 -116371979 - L2 LINE L2 -609 2705 2048 1525 183 67 3 chr12 27911101 27911401 -116371088 - MER2 DNA MER2_type -25 320 2 324 296 133 7 chr12 27911615 27911750 -116370739 + MIR SINE MIR 39 190 -72 437 257 87 108 chr12 27912034 27912516 -116369973 + L1ME4a LINE L1 5568 6039 -82 2616 52 0 3 chr12 27913591 27913900 -116368589 + AluY SINE Alu 1 308 -3 909 179 0 0 chr12 27914488 27914633 -116367856 + FRAM SINE Alu 22 166 -10 465 198 76 25 chr12 27915031 27915188 -116367301 + MER104 DNA Tc2 16 180 0 323 322 98 41 chr12 27915190 27915796 -116366693 - L2 LINE L2 -162 3110 2473 1218 99 82 0 chr12 27915803 27915985 -116366504 + MER30 DNA MER1_type 1 197 -33 245 354 31 21 chr12 27917432 27917528 -116364961 + MIR SINE MIR 17 113 -95 1582 140 121 0 chr12 27917600 27917864 -116364625 + AluJb SINE Alu 1 296 -16 2347 118 97 0 chr12 27918154 27918544 -116363945 - MSTA LTR MaLR 0 428 1 205 414 94 8 chr12 27919170 27919298 -116363191 - L2 LINE L2 -9 3263 3125 349 234 228 8 chr12 27919691 27919912 -116362577 - MER5C DNA MER1_type 0 324 1 674 261 72 10 chr12 27919959 27920166 -116362323 + MIR SINE MIR 2 221 -41 30 45 0 0 chr12 27921222 27921266 -116361223 + AT_rich Low_complexity Low_complexity 1 44 0 1600 150 86 10 chr12 27921428 27921742 -116360747 - MER44D DNA MER2_type -1 608 1 2151 133 0 31 chr12 27921904 27922226 -116360263 + AluSx SINE Alu 1 312 0 1917 120 3 3 chr12 27923498 27923782 -116358707 - AluJb SINE Alu -8 304 21 186 43 0 0 chr12 27924027 27924050 -116358439 + (TG)n Simple_repeat Simple_repeat 2 24 0 420 295 43 7 chr12 27924384 27924523 -116357966 + MIR SINE MIR 86 229 -33 321 118 0 0 chr12 27924945 27924996 -116357493 + (CA)n Simple_repeat Simple_repeat 2 52 0 24 32 0 0 chr12 27926668 27926699 -116355790 + AT_rich Low_complexity Low_complexity 1 31 0 402 253 178 14 chr12 27927866 27927935 -116354554 - MIR SINE MIR -12 250 194 3751 109 71 12 chr12 27927935 27928539 -116353950 - L1PA16 LINE L1 -1 6165 5526 402 253 178 14 chr12 27928539 27928615 -116353874 - MIR SINE MIR -68 194 81 528 301 35 0 chr12 27928810 27928953 -116353536 + MIR SINE MIR 11 158 -104 747 310 66 0 chr12 27928959 27929172 -116353317 + MIR SINE MIR 4 230 -32 745 178 185 0 chr12 27930192 27930349 -116352140 - MER5A DNA MER1_type -3 186 1 350 287 30 10 chr12 27930577 27930678 -116351811 - L2 LINE L2 -12 3260 3158 535 148 46 9 chr12 27930748 27930856 -116351633 + MER63 DNA MER1_type 490 601 -459 1460 209 0 0 chr12 27930856 27931105 -116351384 - AluJo SINE Alu -63 249 1 229 260 0 0 chr12 27931334 27931384 -116351105 + L2 LINE L2 3264 3313 0 1439 186 23 72 chr12 27931554 27931941 -116350548 + MLT1A2 LTR MaLR 1 368 -6 274 308 55 11 chr12 27932748 27932839 -116349650 + MIR3 SINE MIR 11 105 -103 513 226 80 0 chr12 27932859 27932996 -116349493 + MLT1B LTR MaLR 1 148 -242 308 191 32 0 chr12 27932994 27933057 -116349432 + MLT1B LTR MaLR 326 390 0 * 198 314 0 0 chr12 27933094 27933145 -116349344 + L2 LINE L2 3204 3254 -18 * 231 209 0 0 chr12 27933111 27933154 -116349335 + MIR SINE MIR 217 259 -3 293 194 237 43 chr12 27933281 27933374 -116349115 - MIR SINE MIR -126 136 26 2161 110 0 0 chr12 27933920 27934243 -116348246 - AluY SINE Alu 0 323 1 597 158 18 0 chr12 27934933 27935047 -116347442 + LTR16C LTR ERVL 354 469 -22 249 152 0 22 chr12 27935375 27935421 -116347068 + MER75 DNA T2_type 469 513 -1 196 327 19 45 chr12 27935820 27935976 -116346513 - L2 LINE L2 -820 2494 2343 202 264 0 75 chr12 27936176 27936229 -116346260 - L3 LINE CR1 -102 1475 1427 508 208 190 18 chr12 27936237 27936458 -116346031 + MIR SINE MIR 4 262 0 263 291 171 17 chr12 27938957 27939074 -116343415 + MER91A DNA MER1_type 62 196 0 23 33 0 0 chr12 27939166 27939196 -116343293 + AT_rich Low_complexity Low_complexity 1 30 0 226 238 57 9 chr12 27940463 27940568 -116341921 + L1M4 LINE L1 4300 4409 -1737 1665 161 6 74 chr12 27940754 27941077 -116341412 + AluJb SINE Alu 1 301 -11 433 281 92 69 chr12 27941130 27941490 -116340999 + L1M4 LINE L1 4672 5039 -1107 41442 44 3 1 chr12 27941491 27947627 -116334862 + L1PA4 LINE L1 3 6150 -5 26 0 0 0 chr12 27947627 27947653 -116334836 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr12 27947738 27947781 -116334708 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr12 27947923 27947958 -116334531 + AT_rich Low_complexity Low_complexity 1 35 0 1057 132 0 18 chr12 27948000 27948167 -116334322 - AluJb SINE Alu -14 298 135 1379 163 4 9 chr12 27948208 27948441 -116334048 + AluJo SINE Alu 1 232 -80 2107 192 12 23 chr12 27948449 27949038 -116333451 - L1M LINE L1 -743 5403 4840 3560 230 70 28 chr12 27949458 27949572 -116332917 + L1M2 LINE L1 2533 2641 -4924 189 0 0 0 chr12 27949572 27949593 -116332896 + (CA)n Simple_repeat Simple_repeat 2 22 0 3560 230 70 28 chr12 27949593 27950763 -116331726 + L1M2 LINE L1 2641 3887 -3678 864 184 35 29 chr12 27950763 27950937 -116331552 + FAM SINE Alu 1 175 0 3560 230 70 28 chr12 27950937 27951784 -116330705 + L1M2 LINE L1 3887 4697 -2868 1566 222 19 26 chr12 27951792 27952220 -116330269 + L1MA9 LINE L1 5839 6263 -49 861 265 56 20 chr12 27952971 27953220 -116329269 + MIR SINE MIR 5 262 0 1535 183 20 23 chr12 27953553 27953853 -116328636 + AluJo SINE Alu 1 299 -13 280 299 204 25 chr12 27954331 27954532 -116327957 + MIR SINE MIR 18 254 -8 2328 104 0 0 chr12 27954589 27954897 -116327592 + AluY SINE Alu 1 308 -3 1822 160 16 29 chr12 27955196 27955509 -116326980 + AluJo SINE Alu 1 309 -3 2081 128 0 10 chr12 27955575 27955871 -116326618 + AluSg SINE Alu 1 293 -17 2483 172 10 5 chr12 27956105 27956495 -116325994 - MSTD LTR MaLR 0 396 5 369 43 0 0 chr12 27956901 27956948 -116325541 + (CA)n Simple_repeat Simple_repeat 1 47 0 1135 89 0 20 chr12 27958153 27958299 -116324190 + AluSx SINE Alu 1 143 -169 457 145 40 0 chr12 27958299 27958375 -116324114 - MSTD LTR MaLR -224 172 94 1124 131 0 0 chr12 27958375 27958528 -116323961 + AluSx SINE Alu 148 300 -12 2469 64 10 10 chr12 27960206 27960517 -116321972 - AluY SINE Alu 0 311 1 452 253 198 0 chr12 27960561 27960723 -116321766 + MIR3 SINE MIR 9 202 -6 1807 134 55 0 chr12 27960759 27961066 -116321423 + MER33 DNA MER1_type 1 324 0 24 77 0 0 chr12 27962110 27962162 -116320327 + AT_rich Low_complexity Low_complexity 1 52 0 367 181 84 0 chr12 27962298 27962381 -116320108 - MLT1J2 LTR MaLR -9 441 352 449 329 48 29 chr12 27962432 27962639 -116319850 - MLT1K LTR MaLR -158 430 220 261 307 150 41 chr12 27963042 27963335 -116319154 - L2 LINE L2 -741 2573 2249 352 258 67 8 chr12 27963343 27963463 -116319026 + MIR SINE MIR 102 228 -34 213 286 117 0 chr12 27963873 27963950 -116318539 - L2 LINE L2 -49 3223 3138 1078 180 16 16 chr12 27964101 27964290 -116318199 - MER5A DNA MER1_type 0 189 1 2435 212 66 50 chr12 27964622 27965287 -116317202 - LTR8 LTR ERV1 0 691 16 198 0 0 0 chr12 27965707 27965729 -116316760 + (T)n Simple_repeat Simple_repeat 1 22 0 639 230 84 34 chr12 27966325 27966528 -116315961 + MIR SINE MIR 51 262 0 1532 147 0 32 chr12 27966706 27966958 -116315531 + AluJb SINE Alu 1 244 -68 366 187 143 77 chr12 27967944 27968153 -116314336 - L1ME4a LINE L1 0 6121 5899 293 277 98 54 chr12 27968174 27968358 -116314131 - HAL1 LINE L1 -12 2495 2304 311 341 18 24 chr12 27968390 27968554 -116313935 - L1ME4a LINE L1 -342 5779 5617 676 253 77 21 chr12 27969420 27969653 -116312836 - MIR SINE MIR 0 262 17 4000 157 82 46 chr12 27969744 27969778 -116312711 - L1MB2 LINE L1 -4 6167 6136 1897 118 57 7 chr12 27969778 27970057 -116312432 - AluSx SINE Alu -19 293 1 4000 157 82 46 chr12 27970057 27971064 -116311425 - L1MB2 LINE L1 -35 6136 5100 491 257 9 0 chr12 27971378 27971487 -116311002 - MER117 DNA MER1_type -82 115 6 227 243 84 28 chr12 27971568 27971675 -116310814 - MER103 DNA DNA -52 114 2 279 0 0 0 chr12 27972255 27972286 -116310203 + (CA)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr12 27972368 27972399 -116310090 + AT_rich Low_complexity Low_complexity 1 31 0 529 158 0 0 chr12 27972659 27972741 -116309748 - AluSg/x SINE Alu -23 287 206 892 246 33 0 chr12 27972907 27973090 -116309399 + MER5A DNA MER1_type 1 189 0 1078 129 0 148 chr12 27973879 27974135 -116308354 - MER20 DNA MER1_type 0 219 2 189 0 0 0 chr12 27974262 27974283 -116308206 + (TC)n Simple_repeat Simple_repeat 1 21 0 244 364 40 35 chr12 27974304 27974532 -116307957 + L2 LINE L2 964 1192 -2122 2212 159 16 16 chr12 27974629 27974994 -116307495 - MLT1A1 LTR MaLR 0 365 1 229 82 41 20 chr12 27975261 27975310 -116307179 + A-rich Low_complexity Low_complexity 5 54 0 1079 178 0 0 chr12 27975862 27976025 -116306464 + FRAM SINE Alu 1 163 -3 214 195 0 0 chr12 27976286 27976327 -116306162 + T-rich Low_complexity Low_complexity 1 41 0 1028 325 188 12 chr12 27976465 27977354 -116305135 + L2 LINE L2 1456 2500 -814 3837 183 30 26 chr12 27977450 27979715 -116302774 + L1MA4 LINE L1 6 2260 -4222 2045 142 3 7 chr12 27979715 27980018 -116302471 + AluJb SINE Alu 1 302 -10 3837 183 30 26 chr12 27980018 27981349 -116301140 + L1MA4 LINE L1 2260 3584 -2898 1601 162 22 67 chr12 27981349 27981663 -116300826 - AluJb SINE Alu -12 300 1 3837 183 30 26 chr12 27981663 27983943 -116298546 + L1MA4 LINE L1 3584 6185 -297 363 171 57 0 chr12 27983956 27984044 -116298445 + L1MB3 LINE L1 6087 6179 -4 832 158 73 0 chr12 27984050 27984215 -116298274 - MER53 DNA DNA -12 177 1 1146 185 56 85 chr12 27984457 27984633 -116297856 - MLT1A2 LTR MaLR 0 432 252 2283 126 0 0 chr12 27984633 27984943 -116297546 - AluSg SINE Alu 0 310 1 1146 185 56 85 chr12 27984943 27985227 -116297262 - MLT1A2 LTR MaLR -180 252 1 278 184 20 0 chr12 27985320 27985369 -116297120 + MER110 LTR ERV1 354 403 -88 1048 193 11 0 chr12 27985476 27985663 -116296826 - MER5A DNA MER1_type 0 189 1 321 202 26 114 chr12 27985663 27985777 -116296712 - MER5B DNA MER1_type -74 104 1 339 313 53 34 chr12 27985788 27985996 -116296493 + L2 LINE L2 2672 2883 -431 488 187 140 57 chr12 27986147 27986217 -116296272 + MER5A DNA MER1_type 4 67 -122 1675 126 112 4 chr12 27986217 27986486 -116296003 + AluJb SINE Alu 1 298 -14 488 187 140 57 chr12 27986486 27986584 -116295905 + MER5A DNA MER1_type 67 189 0 408 320 96 32 chr12 27986586 27986836 -116295653 + L2 LINE L2 3007 3272 0 424 299 65 23 chr12 27986849 27987076 -116295413 + MIR SINE MIR 16 248 -14 700 222 0 0 chr12 27989889 27990015 -116292474 + MER82 DNA MER2_type 1 126 -527 1062 223 100 4 chr12 27990165 27990394 -116292095 + MER82 DNA MER2_type 116 366 -287 499 256 70 35 chr12 27990365 27990537 -116291952 + MER82 DNA MER2_type 470 647 -6 * 382 202 18 44 chr12 27990917 27990961 -116291528 - L1MA4A LINE L1 -2 6301 6258 1089 149 25 45 chr12 27990961 27991234 -116291255 - L1PB4 LINE L1 -26 6130 5683 1621 218 7 0 chr12 27991234 27991528 -116290961 - AluJo SINE Alu -16 296 1 1089 149 25 45 chr12 27991528 27991612 -116290877 - L1PB4 LINE L1 -473 5683 5599 344 218 90 58 chr12 27992566 27992722 -116289767 - L1ME4a LINE L1 0 6121 5961 1790 169 4 0 chr12 27992746 27993025 -116289464 - AluJb SINE Alu -32 280 1 3085 60 0 3 chr12 27993317 27993681 -116288808 - L1PA7 LINE L1 0 6154 5792 253 276 126 0 chr12 27993682 27993769 -116288720 - L1ME4a LINE L1 -293 5828 5731 383 271 103 19 chr12 27994068 27994223 -116288266 - L1ME4a LINE L1 -391 5730 5563 325 216 52 169 chr12 27994323 27994670 -116287819 + L1ME4a LINE L1 5618 5881 -240 2179 103 3 19 chr12 27994670 27994981 -116287508 + AluSp SINE Alu 1 306 -7 325 216 52 169 chr12 27994981 27995170 -116287319 + L1ME4a LINE L1 5881 6091 -30 845 147 0 0 chr12 27995209 27995325 -116287164 - FLAM_A SINE Alu -17 116 1 2158 124 14 65 chr12 27995501 27995856 -116286633 + MER1B DNA MER1_type 1 337 0 803 206 116 0 chr12 27995963 27996118 -116286371 + MER45A DNA AcHobo 6 178 0 258 286 0 0 chr12 27996159 27996222 -116286267 - MIR SINE MIR -50 212 150 28 0 0 0 chr12 27996917 27996945 -116285544 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr12 27997064 27997096 -116285393 + AT_rich Low_complexity Low_complexity 1 32 0 838 259 123 45 chr12 27997275 27997345 -116285144 - MLT1J LTR MaLR -25 486 423 2369 80 0 7 chr12 27997345 27997647 -116284842 + AluSx SINE Alu 1 300 -12 2547 63 0 0 chr12 27997647 27997948 -116284541 + AluY SINE Alu 1 301 -10 2730 116 9 35 chr12 27997958 27998380 -116284109 + L1PA15 LINE L1 5754 6164 -1 838 259 123 45 chr12 27998380 27998737 -116283752 - MLT1J LTR MaLR -96 415 13 23 33 0 0 chr12 27998786 27998816 -116283673 + AT_rich Low_complexity Low_complexity 1 30 0 512 276 37 0 chr12 27998852 27998986 -116283503 + MIR SINE MIR 98 236 -26 2776 110 28 25 chr12 27998991 27999428 -116283061 - Tigger2 DNA MER2_type -1 2717 2280 395 174 0 0 chr12 27999426 27999495 -116282994 - Tigger2 DNA MER2_type -2649 69 1 * 944 114 25 32 chr12 27999787 27999945 -116282544 + MER2 DNA MER2_type 53 209 -136 2146 108 21 0 chr12 27999998 28000286 -116282203 - L1PA15 LINE L1 -7 6158 5865 277 331 41 8 chr12 28001274 28001395 -116281094 - MIR SINE MIR -43 219 95 2325 102 0 6 chr12 28001991 28002306 -116280183 - AluSq SINE Alu 0 313 1 2114 128 0 26 chr12 28003166 28003479 -116279010 + AluJb SINE Alu 1 305 -7 2490 69 0 25 chr12 28003481 28003798 -116278691 + AluY SINE Alu 3 311 0 203 238 0 0 chr12 28003884 28003926 -116278563 + MIR SINE MIR 15 56 -206 423 295 132 26 chr12 28004378 28004605 -116277884 - MIR SINE MIR -9 253 3 2149 105 34 0 chr12 28004879 28005175 -116277314 + AluSx SINE Alu 1 306 -6 345 246 164 82 chr12 28006129 28006300 -116276189 - MER5A DNA MER1_type -1 188 4 439 268 23 91 chr12 28006439 28006659 -116275830 + MIR SINE MIR 37 241 -21 280 321 105 19 chr12 28006789 28006951 -116275538 - MIR SINE MIR -74 188 13 1187 224 5 0 chr12 28007012 28007231 -116275258 - MER58A DNA MER1_type 0 224 5 838 148 31 0 chr12 28007289 28007417 -116275072 - MER3 DNA MER1_type -77 132 1 354 333 65 25 chr12 28007472 28007635 -116274854 + MIR SINE MIR 43 212 -50 575 270 36 16 chr12 28008627 28008875 -116273614 + L1ME LINE L1 5523 5775 -346 1173 282 48 27 chr12 28010365 28010925 -116271564 + L1MC4a LINE L1 5320 5891 -1917 410 242 51 80 chr12 28012055 28012312 -116270177 - MLT1C LTR MaLR -198 269 18 590 268 88 26 chr12 28012845 28013233 -116269256 - L1MC4 LINE L1 -91 7951 7540 25 51 0 0 chr12 28014070 28014109 -116268380 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr12 28014428 28014449 -116268040 + AT_rich Low_complexity Low_complexity 1 21 0 267 185 31 15 chr12 28014569 28014634 -116267855 - L1M LINE L1 -972 5372 5307 8755 205 38 9 chr12 28014644 28017671 -116264818 - L1 LINE L1 -3036 4172 1054 788 294 115 23 chr12 28017671 28018192 -116264297 - L1M2b LINE L1 -5587 1622 1054 1963 153 9 168 chr12 28018192 28018294 -116264195 - MLT2B3 LTR ERVL 0 554 437 2676 96 3 8 chr12 28018294 28018660 -116263829 + THE1B LTR MaLR 1 364 0 1963 153 9 168 chr12 28018660 28019216 -116263273 - MLT2B3 LTR ERVL -117 437 1 2526 153 16 19 chr12 28019243 28019668 -116262821 + MSTB LTR MaLR 3 426 0 2122 167 146 0 chr12 28019689 28020155 -116262334 - L1M2b LINE L1 -6494 715 182 1665 250 32 66 chr12 28020154 28021018 -116261471 - L1MEc LINE L1 -2432 3783 2949 * 1985 130 3 23 chr12 28021043 28021342 -116261147 - AluSx SINE Alu -19 293 1 1751 219 17 33 chr12 28021343 28021476 -116261013 - L1MEc LINE L1 -3252 2963 2829 1919 158 14 0 chr12 28021476 28021768 -116260721 - AluJb SINE Alu -16 296 1 1751 219 17 33 chr12 28021768 28022154 -116260335 - L1MEc LINE L1 -3386 2829 2452 1775 160 7 23 chr12 28022155 28022462 -116260027 - AluJo SINE Alu -6 306 5 3850 271 55 49 chr12 28022512 28022850 -116259639 - L1MEc LINE L1 -4352 2044 1710 2050 99 56 0 chr12 28022850 28023134 -116259355 + AluSx SINE Alu 1 300 -12 3850 271 55 49 chr12 28023134 28023400 -116259089 - L1MEc LINE L1 -4686 1710 1447 1693 93 0 0 chr12 28023400 28023605 -116258884 + AluSc SINE Alu 88 292 -17 3850 271 55 49 chr12 28023605 28024165 -116258324 - L1MEc LINE L1 -4949 1447 892 2135 106 22 26 chr12 28024165 28024477 -116258012 - AluSx SINE Alu -1 311 1 3850 271 55 49 chr12 28024477 28025306 -116257183 - L1MEc LINE L1 -5504 892 37 392 350 0 8 chr12 28025366 28025489 -116257000 + L2 LINE L2 3189 3310 -3 4084 212 41 24 chr12 28025636 28026955 -116255534 - L1MD2 LINE L1 -2 6357 5015 2274 123 0 0 chr12 28027781 28028082 -116254407 - AluSx SINE Alu -11 301 1 1713 206 34 30 chr12 28028825 28029279 -116253210 + L1ME1 LINE L1 5722 6334 0 1717 155 0 27 chr12 28029381 28029677 -116252812 + AluJo SINE Alu 1 288 -24 21 0 0 0 chr12 28029852 28029873 -116252616 + AT_rich Low_complexity Low_complexity 1 21 0 188 239 131 77 chr12 28030293 28030423 -116252066 + L2 LINE L2 3173 3309 -4 1906 132 10 20 chr12 28030441 28030737 -116251752 - AluSx SINE Alu -17 295 3 327 309 115 26 chr12 28030782 28030973 -116251516 - L1ME4a LINE L1 -79 6042 5835 902 109 0 0 chr12 28031146 28031265 -116251224 + AluJb SINE Alu 1 119 -193 5791 78 5 2 chr12 28031265 28032078 -116250411 + L1PA14 LINE L1 5347 6161 0 1226 162 5 5 chr12 28032084 28032275 -116250214 + AluJb SINE Alu 104 294 -18 2159 87 0 16 chr12 28033196 28033541 -116248948 - L1PA7 LINE L1 0 6154 5851 193 301 0 41 chr12 28033677 28033750 -116248739 + L2 LINE L2 3000 3069 -244 227 288 163 38 chr12 28033930 28034114 -116248375 + L2 LINE L2 3106 3312 -1 293 261 9 0 chr12 28035041 28035152 -116247337 + (TA)n Simple_repeat Simple_repeat 1 112 0 287 118 0 73 chr12 28035434 28035502 -116246987 - L1M LINE L1 -836 5338 5276 1640 168 41 14 chr12 28036325 28036617 -116245872 + AluJb SINE Alu 1 300 -12 4393 166 18 20 chr12 28037573 28038466 -116244023 + L1MB7 LINE L1 5272 6162 -22 21 82 0 0 chr12 28038872 28038921 -116243568 + AT_rich Low_complexity Low_complexity 1 49 0 2608 49 0 0 chr12 28040002 28040310 -116242179 + AluY SINE Alu 1 308 -3 227 328 46 38 chr12 28040597 28040728 -116241761 - MIR3 SINE MIR -17 191 60 332 134 30 30 chr12 28041652 28041719 -116240770 + LTR67 LTR ERVL 491 557 0 28 29 0 0 chr12 28041788 28041823 -116240666 + AT_rich Low_complexity Low_complexity 1 35 0 264 294 50 59 chr12 28042305 28042403 -116240086 - MER5B DNA MER1_type -15 163 65 2353 84 3 0 chr12 28042403 28042700 -116239789 - AluSq SINE Alu -15 298 1 264 294 50 59 chr12 28042700 28042720 -116239769 - MER5B DNA MER1_type -113 65 46 281 330 24 30 chr12 28043255 28043427 -116239062 - MER5A DNA MER1_type -1 188 6 603 294 37 9 chr12 28044551 28044765 -116237724 + LTR16A LTR ERVL 225 444 -6 924 109 45 9 chr12 28044773 28045038 -116237451 - MER89 LTR ERV1 0 559 240 232 194 129 0 chr12 28045050 28045112 -116237377 + MIR SINE MIR 123 192 -70 1383 263 101 30 chr12 28045274 28045818 -116236671 + L2 LINE L2 2447 3036 -277 3310 164 46 5 chr12 28045818 28046469 -116236020 + L1MB7 LINE L1 5465 6142 -42 467 234 86 76 chr12 28046469 28046666 -116235823 + L2 LINE L2 3023 3221 -92 761 264 42 19 chr12 28046878 28047090 -116235399 - MIR SINE MIR -26 236 20 366 341 41 8 chr12 28047105 28047228 -116235261 + L2 LINE L2 3140 3266 -6 959 200 0 0 chr12 28047230 28047400 -116235089 + FRAM SINE Alu 1 169 -7 524 241 35 0 chr12 28047929 28048070 -116234419 - MLT1L LTR MaLR -5 610 465 1465 175 0 105 chr12 28048463 28048795 -116233694 - AluJb SINE Alu -4 298 2 416 204 76 23 chr12 28048840 28048972 -116233517 - L1MC4 LINE L1 -27 8015 7877 186 43 0 0 chr12 28048985 28049008 -116233481 + (TC)n Simple_repeat Simple_repeat 2 24 0 1111 123 39 0 chr12 28049008 28049162 -116233327 - AluJb SINE Alu -23 289 130 216 212 0 0 chr12 28049163 28049229 -116233260 + T-rich Low_complexity Low_complexity 1 66 0 1720 231 36 10 chr12 28049270 28049772 -116232717 - L1MC4 LINE L1 -197 7845 7331 325 276 133 8 chr12 28049921 28050081 -116232408 - MIR3 SINE MIR -64 144 7 229 254 16 131 chr12 28050591 28050713 -116231776 + MIR SINE MIR 25 132 -76 573 114 86 0 chr12 28050824 28050929 -116231560 + MLT1B LTR MaLR 2 115 -275 30 59 0 0 chr12 28050929 28050980 -116231509 + AT_rich Low_complexity Low_complexity 1 51 0 828 183 17 23 chr12 28051754 28051996 -116230493 + MLT1B LTR MaLR 95 390 0 469 184 9 79 chr12 28051998 28052029 -116230460 + MIR SINE MIR 87 119 -143 801 224 35 11 chr12 28052029 28052203 -116230286 - MER45A DNA AcHobo 0 178 1 469 184 9 79 chr12 28052203 28052285 -116230204 + MIR SINE MIR 119 192 -70 1939 160 32 8 chr12 28053155 28053531 -116228958 + LTR45B LTR ERV1 1 385 -104 2165 81 34 30 chr12 28053796 28054094 -116228395 - AluSg SINE Alu -11 299 1 22 35 0 0 chr12 28054347 28054376 -116228113 + AT_rich Low_complexity Low_complexity 1 29 0 495 217 96 0 chr12 28054843 28054958 -116227531 + MIR SINE MIR 23 148 -114 1348 112 8 97 chr12 28054994 28055253 -116227236 - MER46A DNA MER2_type 0 236 1 184 286 95 0 chr12 28055906 28055969 -116226520 - MIR SINE MIR -115 147 79 2186 111 3 3 chr12 28056190 28056487 -116226002 + AluSg SINE Alu 1 297 -13 21 0 0 0 chr12 28057510 28057531 -116224958 + AT_rich Low_complexity Low_complexity 1 21 0 235 355 0 11 chr12 28058274 28058367 -116224122 - MIR SINE MIR -14 248 157 368 234 157 49 chr12 28058826 28058988 -116223501 + MIR SINE MIR 18 192 -64 428 321 64 9 chr12 28059006 28059056 -116223433 + L3 LINE CR1 1331 1377 -200 2307 69 3 20 chr12 28059056 28059359 -116223130 - AluSp SINE Alu -15 298 1 428 321 64 9 chr12 28059359 28059526 -116222963 + L3 LINE CR1 1377 1560 -17 490 225 38 41 chr12 28060752 28060909 -116221580 - MIR SINE MIR -62 146 30 325 306 113 31 chr12 28061445 28061605 -116220884 + MIR SINE MIR 20 192 -70 2041 119 17 3 chr12 28061689 28061991 -116220498 + AluSx SINE Alu 1 306 -6 26 30 0 0 chr12 28062928 28062961 -116219528 + GC_rich Low_complexity Low_complexity 1 33 0 216 0 0 0 chr12 28064382 28064406 -116218083 + (A)n Simple_repeat Simple_repeat 1 24 0 2288 101 3 7 chr12 28065418 28065726 -116216763 + AluSq SINE Alu 1 307 -6 1802 153 23 7 chr12 28066110 28066410 -116216079 - AluJb SINE Alu -7 305 1 2055 128 0 0 chr12 28066804 28067113 -116215376 - AluSx SINE Alu 0 311 3 2255 102 0 0 chr12 28068278 28068563 -116213926 + AluSx SINE Alu 1 285 -27 662 251 134 73 chr12 28069440 28069918 -116212571 + MLT1J LTR MaLR 1 507 -4 548 266 32 13 chr12 28069991 28070149 -116212340 + MIR SINE MIR 28 188 -74 1972 117 7 30 chr12 28070170 28070468 -116212021 - AluSx SINE Alu -21 291 1 433 217 286 32 chr12 28070771 28070960 -116211529 + MIR SINE MIR 5 241 -21 917 169 91 0 chr12 28071876 28072030 -116210459 - FAM SINE Alu -7 168 1 648 232 173 36 chr12 28072186 28072406 -116210083 - MIR SINE MIR 0 262 13 387 309 99 20 chr12 28072477 28072729 -116209760 - L2 LINE L2 -997 2317 2046 4590 173 59 73 chr12 28073957 28074243 -116208246 - MER45B DNA AcHobo -543 1038 750 1525 180 56 0 chr12 28074243 28074550 -116207939 - AluJb SINE Alu 0 324 3 4590 173 59 73 chr12 28074550 28075129 -116207360 - MER45B DNA AcHobo -831 750 186 2552 131 46 10 chr12 28075129 28075540 -116206949 - MSTB LTR MaLR 0 426 1 4590 173 59 73 chr12 28075540 28075715 -116206774 - MER45B DNA AcHobo -1395 186 10 2280 89 0 3 chr12 28075993 28076284 -116206205 - AluSg SINE Alu -20 290 1 321 175 188 0 chr12 28077286 28077366 -116205123 - MIR SINE MIR -49 213 119 197 235 0 20 chr12 28077467 28077518 -116204971 + L2 LINE L2 3261 3310 -3 207 297 0 69 chr12 28077679 28077723 -116204766 + MIR SINE MIR 127 172 -90 1193 187 9 9 chr12 28077723 28077942 -116204547 + MER20 DNA MER1_type 1 219 0 207 297 0 69 chr12 28077942 28077998 -116204491 + MIR SINE MIR 172 220 -42 354 285 38 32 chr12 28078558 28078716 -116203773 - L1ME4a LINE L1 -1 6120 5962 1102 150 39 0 chr12 28078918 28079098 -116203391 - AluJo SINE Alu -14 298 112 262 191 0 0 chr12 28079098 28079140 -116203349 + MER20 DNA MER1_type 178 219 0 333 203 100 0 chr12 28079325 28079397 -116203092 - AluJ/FLAM SINE Alu -236 66 1 334 279 123 54 chr12 28079641 28079917 -116202572 - L1M4 LINE L1 -746 5400 5106 439 312 69 37 chr12 28080801 28080941 -116201548 + MIR SINE MIR 29 163 -99 1281 162 162 55 chr12 28080941 28081250 -116201239 - MER2 DNA MER2_type -2 342 1 439 312 69 37 chr12 28081250 28081269 -116201220 + MIR SINE MIR 163 180 -82 541 105 13 0 chr12 28081269 28081345 -116201144 + MADE1 DNA Mariner 3 79 -1 439 312 69 37 chr12 28081345 28081373 -116201116 + MIR SINE MIR 180 223 -39 1899 168 3 7 chr12 28082734 28083031 -116199458 - AluJo SINE Alu -12 300 5 7555 48 11 1 chr12 28083180 28084247 -116198242 + L1PA7 LINE L1 5077 6152 -2 272 248 172 27 chr12 28085042 28085226 -116197263 + MIR SINE MIR 2 216 -46 1822 139 45 7 chr12 28085584 28085871 -116196618 + AluJb SINE Alu 1 298 -14 824 255 153 25 chr12 28086371 28086775 -116195714 - LTR16A1 LTR ERVL -1 456 1 187 283 0 0 chr12 28088813 28088859 -116193630 + MIR SINE MIR 12 57 -205 199 156 0 0 chr12 28089447 28089479 -116193010 - MIR SINE MIR -150 112 81 227 174 0 65 chr12 28089506 28089552 -116192937 - HsTC2 DNA Tc2 -1816 82 40 190 311 0 16 chr12 28089576 28089637 -116192852 - MIR SINE MIR -183 79 20 35 0 0 0 chr12 28089825 28089860 -116192629 + AT_rich Low_complexity Low_complexity 1 35 0 305 248 78 78 chr12 28089873 28090026 -116192463 - MIR SINE MIR -96 166 14 314 256 35 12 chr12 28090850 28090936 -116191553 + MIR3 SINE MIR 113 200 -8 2696 106 132 2 chr12 28091538 28091964 -116190525 - MER31A LTR ERV1 -1 484 4 202 143 29 0 chr12 28092523 28092558 -116189931 + MER91B DNA MER1_type 32 67 -123 827 311 112 49 chr12 28093280 28093872 -116188617 + L3 LINE CR1 694 1322 -255 2165 88 17 10 chr12 28096092 28096386 -116186103 - AluY SINE Alu -15 296 1 273 29 0 0 chr12 28097111 28097145 -116185344 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 252 0 0 0 chr12 28097321 28097349 -116185140 + (CA)n Simple_repeat Simple_repeat 2 29 0 324 48 0 0 chr12 28097450 28097492 -116184997 + (CA)n Simple_repeat Simple_repeat 2 43 0 1567 175 25 41 chr12 28097707 28098021 -116184468 - AluJo SINE Alu -3 309 1 2220 87 10 0 chr12 28098032 28098320 -116184169 - AluSg SINE Alu -19 291 1 351 286 193 33 chr12 28099439 28099652 -116182837 - MIR SINE MIR -7 255 9 642 283 45 18 chr12 28100380 28100662 -116181827 + L2 LINE L2 2720 3011 -302 1097 160 15 39 chr12 28100697 28100903 -116181586 + AluJo SINE Alu 84 284 -28 504 225 190 20 chr12 28100935 28101135 -116181354 + L2 LINE L2 3079 3312 -1 357 283 126 40 chr12 28101535 28101733 -116180756 + MIR SINE MIR 20 234 -28 533 204 26 86 chr12 28101850 28102002 -116180487 + MLT1E3 LTR MaLR 62 204 -420 1381 148 0 62 chr12 28102013 28102269 -116180220 + AluY SINE Alu 1 240 -71 398 244 67 28 chr12 28102457 28102637 -116179852 - L1ME4a LINE L1 -11 6110 5924 295 292 0 0 chr12 28103026 28103098 -116179391 + (CA)n Simple_repeat Simple_repeat 1 72 0 2081 92 7 14 chr12 28103366 28103659 -116178830 + AluY SINE Alu 1 291 -20 2032 78 7 11 chr12 28104148 28104417 -116178072 - AluY SINE Alu 0 311 44 302 264 23 62 chr12 28104489 28104618 -116177871 + L1ME4a LINE L1 5984 6107 -14 388 320 20 20 chr12 28104629 28104776 -116177713 + MIR SINE MIR 8 154 -108 2158 108 0 16 chr12 28105230 28105536 -116176953 + AluSg SINE Alu 1 301 -9 330 224 95 34 chr12 28105740 28105887 -116176602 + Charlie7 DNA MER1_type 2457 2612 0 2447 76 0 3 chr12 28107112 28107414 -116175075 - AluSg SINE Alu -9 301 1 654 248 139 18 chr12 28108411 28108685 -116173804 - MER102b DNA MER1_type 0 341 35 681 245 92 15 chr12 28109897 28110093 -116172396 - MIR SINE MIR -42 220 10 1143 244 59 60 chr12 28110381 28110927 -116171562 + L1MC5 LINE L1 7373 7917 -44 263 246 56 0 chr12 28111627 28111711 -116170778 + MIR SINE MIR 100 186 -22 1670 168 56 7 chr12 28112137 28112423 -116170066 - AluJo SINE Alu -12 300 1 237 132 0 0 chr12 28113193 28113231 -116169258 + (TG)n Simple_repeat Simple_repeat 1 38 0 2274 234 66 20 chr12 28115181 28115774 -116166715 + MER82 DNA MER2_type 1 620 -33 202 216 78 0 chr12 28116345 28116396 -116166093 + L2 LINE L2 3218 3272 0 194 314 0 47 chr12 28116736 28116822 -116165667 - L2 LINE L2 -5 3308 3227 257 366 81 14 chr12 28118975 28119196 -116163293 - L2 LINE L2 -337 2977 2742 1587 179 19 35 chr12 28119229 28119542 -116162947 + AluJo SINE Alu 4 311 -1 670 270 73 65 chr12 28120228 28120476 -116162013 + MIR SINE MIR 2 251 -11 1062 181 15 20 chr12 28120615 28120814 -116161675 - MER58A DNA MER1_type 0 224 27 23 0 0 0 chr12 28122738 28122761 -116159728 + AT_rich Low_complexity Low_complexity 1 23 0 245 200 0 0 chr12 28123320 28123365 -116159124 - L2 LINE L2 0 3313 3269 262 202 12 36 chr12 28123452 28123536 -116158953 + GA-rich Low_complexity Low_complexity 4 85 0 220 222 0 0 chr12 28124233 28124278 -116158211 - MIR SINE MIR 0 262 218 206 355 138 0 chr12 28124319 28124471 -116158018 - MIR SINE MIR -19 243 71 248 373 42 7 chr12 28124675 28124817 -116157672 + MIR3 SINE MIR 35 181 -27 678 256 37 0 chr12 28124974 28125138 -116157351 - MIR SINE MIR -77 185 16 1823 171 7 0 chr12 28125293 28125586 -116156903 + AluSx SINE Alu 1 295 -17 2568 43 0 7 chr12 28126216 28126520 -116155969 + AluY SINE Alu 1 302 -9 398 208 133 17 chr12 28126596 28126716 -116155773 - L1MC4 LINE L1 -91 7951 7818 931 261 104 63 chr12 28126773 28127264 -116155225 - L1MC4 LINE L1 -364 7678 7168 590 161 0 0 chr12 28128233 28128320 -116154169 - AluJ/FLAM SINE Alu -224 88 2 234 339 101 77 chr12 28129026 28129048 -116153441 - L2 LINE L2 -20 3252 3232 2132 128 0 0 chr12 28129048 28129352 -116153137 - AluSx SINE Alu -8 304 1 234 339 101 77 chr12 28129352 28129615 -116152874 - L2 LINE L2 -40 3232 2960 210 327 18 18 chr12 28130231 28130341 -116152148 - L2 LINE L2 -2959 355 246 386 246 65 29 chr12 28130520 28130658 -116151831 - MIR SINE MIR -50 212 70 2012 116 41 3 chr12 28131734 28132027 -116150462 + AluSq SINE Alu 1 304 -9 180 111 0 0 chr12 28132957 28132984 -116149505 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 2385 110 0 0 chr12 28133044 28133354 -116149135 - AluSx SINE Alu -2 310 1 398 244 67 28 chr12 28133540 28133720 -116148769 - L1ME4a LINE L1 -11 6110 5924 240 300 135 20 chr12 28133829 28134029 -116148460 - L1ME4a LINE L1 -362 5759 5537 204 278 0 0 chr12 28134109 28134181 -116148308 + (CA)n Simple_repeat Simple_repeat 1 72 0 2242 75 4 0 chr12 28134449 28134727 -116147762 + AluSp SINE Alu 1 279 -34 297 0 0 0 chr12 28134729 28134762 -116147727 + (CAA)n Simple_repeat Simple_repeat 1 33 0 324 0 0 0 chr12 28134763 28134799 -116147690 + (TA)n Simple_repeat Simple_repeat 2 37 0 333 0 0 0 chr12 28134948 28134985 -116147504 + (CA)n Simple_repeat Simple_repeat 2 38 0 191 35 0 35 chr12 28135378 28135407 -116147082 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 974 174 26 0 chr12 28135410 28135565 -116146924 - FRAM SINE Alu -24 152 1 707 274 24 59 chr12 28135567 28135822 -116146667 - MIR SINE MIR -8 254 9 2191 63 44 0 chr12 28136029 28136330 -116146159 - AluSg SINE Alu 0 313 1 2040 119 3 3 chr12 28136661 28136981 -116145508 - AluSq SINE Alu 0 320 1 2746 96 14 16 chr12 28137032 28137396 -116145093 - THE1B LTR MaLR 0 364 2 351 0 0 0 chr12 28137415 28137454 -116145035 + (TG)n Simple_repeat Simple_repeat 2 40 0 1175 175 45 135 chr12 28137982 28138383 -116144106 + MLT2B1 LTR ERVL 1 365 -49 216 135 0 0 chr12 28138388 28138425 -116144064 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 261 198 5 0 chr12 28138446 28138507 -116143982 + MLT2B1 LTR ERVL 391 520 0 1831 229 61 2 chr12 28138562 28139021 -116143468 + L1MC4a LINE L1 7323 7808 0 2248 95 10 3 chr12 28139032 28139328 -116143161 + AluSq SINE Alu 1 298 -15 319 106 0 0 chr12 28139651 28139698 -116142791 + L1MB3 LINE L1 6099 6145 -38 1489 176 48 14 chr12 28139718 28140008 -116142481 - L1MA6 LINE L1 -2 6298 5999 848 201 85 0 chr12 28140755 28140944 -116141545 - MER3 DNA MER1_type -4 205 1 1312 143 76 4 chr12 28141150 28141388 -116141101 - L1MA9 LINE L1 -5 6307 6053 194 287 185 9 chr12 28142096 28142204 -116140285 + MIR SINE MIR 67 193 -69 214 125 25 25 chr12 28142407 28142447 -116140042 + L2 LINE L2 3138 3177 -95 24 32 0 0 chr12 28143200 28143231 -116139258 + AT_rich Low_complexity Low_complexity 1 31 0 2448 110 22 30 chr12 28143625 28143990 -116138499 - THE1B LTR MaLR 0 364 3 361 262 16 25 chr12 28144189 28144311 -116138178 + L1ME1 LINE L1 5935 6055 -111 502 186 242 63 chr12 28144311 28144563 -116137926 - MER33 DNA MER1_type 0 324 28 398 202 39 39 chr12 28144592 28144696 -116137793 + L1ME1 LINE L1 6061 6164 -2 213 325 278 0 chr12 28145422 28145573 -116136916 + L3 LINE CR1 691 883 -694 324 331 63 16 chr12 28145839 28145966 -116136523 - MER5A DNA MER1_type -50 139 7 1169 154 50 11 chr12 28146356 28146538 -116135951 - MER5A DNA MER1_type 0 189 1 197 0 71 0 chr12 28147755 28147783 -116134706 + (TTTTG)n Simple_repeat Simple_repeat 5 34 0 849 333 105 28 chr12 28148127 28148671 -116133818 + L2 LINE L2 2323 2908 -406 321 329 205 0 chr12 28148841 28149002 -116133487 - MER91A DNA MER1_type -1 195 2 22 0 0 0 chr12 28149118 28149140 -116133349 + AT_rich Low_complexity Low_complexity 1 22 0 1215 180 40 68 chr12 28150132 28150454 -116132035 - MLT1B LTR MaLR -77 313 1 297 0 0 0 chr12 28150662 28150695 -116131794 + (TC)n Simple_repeat Simple_repeat 1 33 0 1927 128 3 50 chr12 28151205 28151525 -116130964 - AluJb SINE Alu -7 305 1 468 0 0 0 chr12 28151803 28151855 -116130634 + (CAT)n Simple_repeat Simple_repeat 1 52 0 2309 102 3 0 chr12 28152301 28152604 -116129885 + AluSx SINE Alu 4 307 -5 1837 173 0 16 chr12 28152972 28153278 -116129211 + AluJb SINE Alu 1 301 -11 215 265 61 0 chr12 28154513 28154562 -116127927 - MIR3 SINE MIR -46 162 111 262 246 0 15 chr12 28154829 28154894 -116127595 + MIR SINE MIR 91 154 -108 216 244 0 0 chr12 28154954 28155021 -116127468 + polypyrimidine Low_complexity Low_complexity 1 67 0 219 357 18 40 chr12 28155660 28155887 -116126602 - L2 LINE L2 -1893 1421 1200 227 318 0 0 chr12 28156299 28156362 -116126127 + L2 LINE L2 3246 3308 -5 1322 177 3 5 chr12 28156365 28156659 -116125830 + MER2 DNA MER2_type 1 344 -1 3133 109 56 56 chr12 28157102 28157708 -116124781 + MER4B LTR ERV1 1 774 -5 1974 161 45 3 chr12 28158009 28158339 -116124150 + MER2 DNA MER2_type 1 344 0 277 241 241 9 chr12 28158480 28158588 -116123901 + L2 LINE L2 2405 2537 -777 533 205 41 8 chr12 28158592 28158714 -116123775 + L1ME2 LINE L1 6031 6156 -8 274 171 13 13 chr12 28158785 28158861 -116123628 + (TA)n Simple_repeat Simple_repeat 1 76 0 914 264 75 53 chr12 28158916 28159422 -116123067 + L2 LINE L2 2557 3068 -245 794 220 89 14 chr12 28159467 28159681 -116122808 + MIR SINE MIR 9 238 -24 542 216 16 135 chr12 28159699 28159944 -116122545 + L2 LINE L2 3098 3313 0 1190 182 98 0 chr12 28159997 28160200 -116122289 - MER58A DNA MER1_type -1 223 1 239 194 148 83 chr12 28161154 28161262 -116121227 - MER5C DNA MER1_type 0 324 210 389 259 93 9 chr12 28161289 28161397 -116121092 - MER5C DNA MER1_type -201 123 7 384 181 112 52 chr12 28161530 28161646 -116120843 + L2 LINE L2 3188 3310 -3 1730 174 0 29 chr12 28162294 28162610 -116119879 + AluJo SINE Alu 1 307 -5 1602 144 91 4 chr12 28163867 28164130 -116118359 + AluJb SINE Alu 3 288 -24 713 215 141 16 chr12 28164144 28164236 -116118253 - L1MC5 LINE L1 -73 7888 7809 186 43 0 0 chr12 28164236 28164259 -116118230 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 713 215 141 16 chr12 28164259 28164422 -116118067 - L1MC5 LINE L1 -152 7809 7601 2305 96 3 22 chr12 28164447 28164759 -116117730 - AluSx SINE Alu -6 306 1 564 161 0 21 chr12 28164778 28164871 -116117618 + FLAM_A SINE Alu 34 124 -18 577 212 7 73 chr12 28165338 28165446 -116117043 - MER5A DNA MER1_type -15 174 77 2230 112 3 0 chr12 28165446 28165741 -116116748 - AluSx SINE Alu -15 297 2 577 212 7 73 chr12 28165741 28165783 -116116706 - MER5A DNA MER1_type -112 77 34 1489 99 22 0 chr12 28165843 28166065 -116116424 - L1MA3 LINE L1 -3 6302 6076 1862 131 32 32 chr12 28167043 28167355 -116115134 - AluJo SINE Alu 0 312 1 513 298 169 11 chr12 28167655 28167934 -116114555 - LTR16C LTR ERVL -44 447 125 822 225 175 21 chr12 28168190 28168475 -116114014 - L1ME2 LINE L1 -52 6112 5784 347 245 66 13 chr12 28168800 28168951 -116113538 - L1MEc LINE L1 -3382 2833 2675 331 204 86 0 chr12 28168987 28169080 -116113409 + L1MEc LINE L1 2148 2248 -4148 745 242 110 11 chr12 28169120 28169483 -116113006 - L1MEc LINE L1 -3608 2607 2209 1223 124 77 0 chr12 28169512 28169721 -116112768 - L1PB3 LINE L1 -6 6148 5924 342 236 94 9 chr12 28169725 28169831 -116112658 - L1MEc LINE L1 -4134 2262 2148 371 211 0 22 chr12 28169843 28169933 -116112556 + FLAM_A SINE Alu 44 131 -2 229 285 73 33 chr12 28170234 28170385 -116112104 + L2 LINE L2 3048 3204 -109 213 259 96 7 chr12 28170394 28170530 -116111959 + MER5C DNA MER1_type 77 321 -3 337 289 144 30 chr12 28171493 28171694 -116110795 + MIR SINE MIR 35 258 -4 189 74 0 0 chr12 28171727 28171754 -116110735 + (TG)n Simple_repeat Simple_repeat 1 27 0 259 194 194 0 chr12 28172572 28172634 -116109855 - MER5A DNA MER1_type -114 75 2 2444 84 0 0 chr12 28172712 28173011 -116109478 - AluSg1 SINE Alu -10 299 1 823 173 45 67 chr12 28173023 28173202 -116109287 - FAM SINE Alu 0 175 1 207 330 65 45 chr12 28173223 28173423 -116109066 + L2 LINE L2 2252 2455 -859 764 81 130 0 chr12 28174502 28174625 -116107864 - MER85 DNA T2_type 0 139 1 1340 247 37 60 chr12 28175549 28176159 -116106330 + L2 LINE L2 2704 3311 -2 192 152 0 0 chr12 28176823 28176856 -116105633 + CT-rich Low_complexity Low_complexity 3 35 0 1360 153 16 4 chr12 28176865 28177119 -116105370 + L1MB3 LINE L1 5925 6181 -2 393 297 50 33 chr12 28177291 28177473 -116105016 + MIR SINE MIR 42 226 -36 1878 86 4 11 chr12 28180544 28180822 -116101667 + LTR17 LTR ERV1 51 326 -454 333 0 0 0 chr12 28180823 28180860 -116101629 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 194 184 0 26 chr12 28180957 28180995 -116101494 + L3 LINE CR1 1540 1576 -1 275 77 0 0 chr12 28181919 28181958 -116100531 + tRNA-Ile-ATT tRNA tRNA 1 39 -38 230 324 184 68 chr12 28182164 28182500 -116099989 - L2 LINE L2 0 3272 2898 1524 190 23 36 chr12 28182952 28183257 -116099232 - AluJo SINE Alu -11 301 1 892 167 0 0 chr12 28185282 28185414 -116097075 - FLAM_A SINE Alu -5 137 6 26 30 0 0 chr12 28185526 28185559 -116096930 + AT_rich Low_complexity Low_complexity 1 33 0 2209 102 7 0 chr12 28185876 28186171 -116096318 - AluSx SINE Alu -9 303 7 6476 97 22 2 chr12 28187009 28188011 -116094478 + L1MA2 LINE L1 5271 6297 -7 563 255 71 47 chr12 28188063 28188275 -116094214 + MIR SINE MIR 22 238 -24 2053 123 0 3 chr12 28188420 28188728 -116093761 - AluSx SINE Alu 0 307 1 200 130 22 0 chr12 28189031 28189077 -116093412 + CT-rich Low_complexity Low_complexity 2 48 0 220 186 34 17 chr12 28189641 28189700 -116092789 + MIR SINE MIR 57 116 -146 786 194 0 8 chr12 28190150 28190284 -116092205 - FLAM_C SINE Alu 0 133 1 2187 118 0 3 chr12 28192180 28192485 -116090004 + AluSx SINE Alu 1 304 -8 285 366 0 0 chr12 28196416 28196509 -116085980 + MIR3 SINE MIR 111 203 -5 1830 144 0 85 chr12 28196702 28197042 -116085447 + AluJo SINE Alu 1 311 -1 299 317 10 0 chr12 28197081 28197182 -116085307 + MER5C DNA MER1_type 4 105 -219 221 263 18 0 chr12 28197413 28197470 -116085019 - MIR3 SINE MIR -51 157 100 1282 128 0 62 chr12 28198253 28198464 -116084025 + AluJo SINE Alu 51 248 -64 478 149 23 23 chr12 28198464 28198551 -116083938 + AluJo/FRAM SINE Alu 210 296 -16 799 224 13 0 chr12 28198676 28198828 -116083661 + FRAM SINE Alu 2 155 -21 932 122 0 0 chr12 28198937 28199068 -116083421 - FLAM_C SINE Alu -2 131 1 187 343 90 22 chr12 28200950 28201084 -116081405 - L2 LINE L2 -180 3092 2950 415 327 155 29 chr12 28201262 28201675 -116080814 - L2 LINE L2 -585 2729 2265 489 220 54 119 chr12 28201833 28202169 -116080320 - MLT1H LTR MaLR -113 436 123 2066 142 3 0 chr12 28202435 28202737 -116079752 + AluJb SINE Alu 1 303 -9 224 226 0 0 chr12 28202898 28202951 -116079538 + T-rich Low_complexity Low_complexity 3 55 0 483 302 148 41 chr12 28203539 28203782 -116078707 - L2 LINE L2 -291 2981 2765 2077 120 0 0 chr12 28203782 28204073 -116078416 + AluSx SINE Alu 1 291 -21 483 302 148 41 chr12 28204073 28204415 -116078074 - L2 LINE L2 -507 2765 2317 305 214 136 39 chr12 28204963 28205117 -116077372 - L1ME4a LINE L1 -33 6088 5920 1454 240 172 6 chr12 28206495 28206978 -116075511 - MLT1G1 LTR MaLR -29 566 4 285 244 80 128 chr12 28206993 28207329 -116075160 - MLT1G1-int LTR MaLR -24 1347 1028 305 232 61 0 chr12 28207924 28208006 -116074483 - MLT1G1-int LTR MaLR -1194 541 455 1793 166 14 10 chr12 28209375 28209693 -116072796 + AluJo SINE Alu 2 320 0 231 254 75 75 chr12 28209735 28209869 -116072620 - MIR SINE MIR -82 180 47 743 197 8 0 chr12 28209899 28210031 -116072458 + FLAM_A SINE Alu 1 133 0 2123 141 3 0 chr12 28210666 28210965 -116071524 + AluSx SINE Alu 1 300 -12 1734 163 40 0 chr12 28213188 28213488 -116069001 + L1MB5 LINE L1 5853 6164 -10 1652 159 9 92 chr12 28213688 28214015 -116068474 - AluJo SINE Alu -9 303 4 1171 167 5 9 chr12 28214453 28214663 -116067826 + L1 LINE L1 4890 5098 -1048 2470 86 0 0 chr12 28217454 28217758 -116064731 + AluSg1 SINE Alu 1 304 -5 786 257 119 18 chr12 28219251 28219477 -116063012 + MIR SINE MIR 6 254 -8 387 127 16 0 chr12 28221872 28221935 -116060554 + L1MB7 LINE L1 6106 6169 -15 2220 115 3 7 chr12 28221936 28222241 -116060248 - AluSx SINE Alu -8 304 1 2507 77 0 0 chr12 28222652 28222963 -116059526 - AluY SINE Alu 0 311 1 2162 130 0 0 chr12 28222978 28223285 -116059204 - AluSx SINE Alu -5 307 1 222 313 40 20 chr12 28223525 28223624 -116058865 - MIR SINE MIR -16 246 146 1349 145 52 12 chr12 28223652 28223900 -116058589 - L1MD3 LINE L1 0 7995 7738 283 227 53 0 chr12 28224089 28224164 -116058325 - L1MC4 LINE L1 -1349 6693 6615 395 241 50 57 chr12 28224200 28224341 -116058148 - MIR SINE MIR -105 157 18 1320 137 64 9 chr12 28224537 28224770 -116057719 + L1MD3 LINE L1 7750 7995 0 23 0 0 0 chr12 28225093 28225116 -116057373 + AT_rich Low_complexity Low_complexity 1 23 0 805 178 8 0 chr12 28225632 28225761 -116056728 + AluJo SINE Alu 2 131 -171 1707 174 0 13 chr12 28226677 28226975 -116055514 + AluJb SINE Alu 1 294 -18 223 217 14 72 chr12 28227638 28227707 -116054782 + MIR SINE MIR 19 83 -125 298 232 43 85 chr12 28228227 28228391 -116054098 - TAR1 Satellite telomeric -1832 279 123 3351 137 40 16 chr12 28228417 28228987 -116053502 - LTR60 LTR ERV1 -2 584 1 1129 179 146 19 chr12 28228998 28229210 -116053279 - MER8 DNA MER2_type 0 239 1 586 97 0 0 chr12 28229250 28229322 -116053167 + tRNA-Lys-AAA tRNA tRNA 2 73 -3 850 179 0 65 chr12 28229329 28229497 -116052992 + AluJo SINE Alu 134 290 -22 888 149 0 0 chr12 28230171 28230292 -116052197 + FLAM_A SINE Alu 1 121 -12 626 244 73 0 chr12 28230922 28231086 -116051403 - MIR SINE MIR 0 262 87 23 54 0 0 chr12 28232239 28232276 -116050213 + AT_rich Low_complexity Low_complexity 1 37 0 1960 124 21 3 chr12 28232569 28232852 -116049637 - AluSg SINE Alu -22 288 1 1715 153 3 75 chr12 28232857 28233190 -116049299 - AluJo SINE Alu -3 309 1 2379 77 0 13 chr12 28233997 28234296 -116048193 - AluY SINE Alu -16 295 1 2048 129 10 10 chr12 28234775 28235078 -116047411 + AluJb SINE Alu 1 303 -9 1088 188 0 0 chr12 28236610 28236770 -116045719 + FRAM SINE Alu 1 160 -6 1859 142 25 0 chr12 28237352 28237626 -116044863 + AluJb SINE Alu 23 303 -9 306 247 155 0 chr12 28238002 28238099 -116044390 + MER112 DNA MER1_type 129 240 -20 294 232 265 7 chr12 28238421 28238572 -116043917 + LTR33 LTR ERVL 324 513 -8 202 238 89 79 chr12 28238572 28238653 -116043836 + MIR SINE MIR 116 200 -62 2305 96 23 0 chr12 28238653 28238956 -116043533 + AluSg SINE Alu 1 310 0 202 238 89 79 chr12 28238956 28238975 -116043514 + MIR SINE MIR 200 217 -45 1046 277 70 52 chr12 28239627 28239794 -116042695 - L2 LINE L2 -4 3309 3146 1847 126 7 11 chr12 28239794 28240065 -116042424 + AluSx SINE Alu 16 285 -27 1046 277 70 52 chr12 28240065 28240497 -116041992 - L2 LINE L2 -167 3146 2690 2274 114 0 0 chr12 28240497 28240794 -116041695 + AluSx SINE Alu 1 297 -15 1046 277 70 52 chr12 28240794 28241009 -116041480 - L2 LINE L2 -623 2690 2480 218 176 20 0 chr12 28241725 28241776 -116040713 + GA-rich Low_complexity Low_complexity 2 53 0 2413 83 0 3 chr12 28241918 28242230 -116040259 + AluY SINE Alu 1 311 0 215 278 231 0 chr12 28242779 28242887 -116039602 + MIR SINE MIR 17 149 -113 3965 137 29 2 chr12 28242896 28243482 -116039007 - MER7C DNA MER2_type 0 602 1 26 0 0 0 chr12 28243820 28243846 -116038643 + AT_rich Low_complexity Low_complexity 1 26 0 432 269 39 77 chr12 28243973 28244155 -116038334 + MER5B DNA MER1_type 1 175 -3 3125 195 128 29 chr12 28244169 28245038 -116037451 - LTR28 LTR ERV1 0 1020 5 253 250 0 0 chr12 28245040 28245100 -116037389 - L1ME LINE L1 -325 5796 5737 2322 114 0 0 chr12 28245198 28245505 -116036984 + AluSx SINE Alu 1 307 -5 928 126 28 0 chr12 28245527 28245670 -116036819 + L1MA3 LINE L1 6159 6305 0 733 162 0 8 chr12 28245758 28245875 -116036614 - MER45A DNA AcHobo 0 178 63 1944 155 3 0 chr12 28245951 28246247 -116036242 - AluJb SINE Alu -14 298 2 4459 132 9 42 chr12 28246614 28247349 -116035140 + MER50 LTR ERV1 1 711 -23 285 305 126 18 chr12 28247483 28247650 -116034839 - MIR SINE MIR -62 200 16 1345 159 47 27 chr12 28247671 28247929 -116034560 + MLT1C LTR MaLR 205 467 0 745 180 0 8 chr12 28248211 28248333 -116034156 + AluJo SINE Alu 14 134 -178 1642 166 14 41 chr12 28248343 28248638 -116033851 + AluJb SINE Alu 1 287 -25 43 0 0 0 chr12 28248638 28248681 -116033808 + AT_rich Low_complexity Low_complexity 1 43 0 2090 84 40 0 chr12 28248695 28248991 -116033498 - AluSp SINE Alu 0 307 1 289 313 0 0 chr12 28249209 28249276 -116033213 - MIR SINE MIR -160 102 36 356 348 120 0 chr12 28250446 28250696 -116031793 + L2 LINE L2 2494 2773 -541 1437 271 79 29 chr12 28250781 28251590 -116030899 - L2 LINE L2 -22 3291 2384 1799 160 7 7 chr12 28251611 28251905 -116030584 + AluJb SINE Alu 1 294 -18 309 328 16 25 chr12 28252023 28252145 -116030344 + L2 LINE L2 2935 3055 -217 2563 140 96 77 chr12 28252147 28252681 -116029808 - MLT2B3 LTR ERVL -8 546 3 1721 152 47 7 chr12 28252682 28252979 -116029510 + AluJb SINE Alu 1 309 -3 1813 151 14 7 chr12 28253182 28253461 -116029028 + AluSx SINE Alu 1 281 -31 1906 133 36 3 chr12 28254001 28254303 -116028186 - AluSq SINE Alu -1 312 1 328 91 0 0 chr12 28254303 28254347 -116028142 - Alu SINE Alu -259 44 1 187 247 123 0 chr12 28255360 28255441 -116027048 + L2 LINE L2 2331 2421 -893 26 30 0 0 chr12 28255446 28255479 -116027010 + AT_rich Low_complexity Low_complexity 1 33 0 2314 94 0 10 chr12 28255582 28255881 -116026608 + AluSx SINE Alu 1 296 -16 816 161 8 0 chr12 28255934 28256058 -116026431 - FLAM_C SINE Alu -8 125 1 229 191 0 0 chr12 28256735 28256777 -116025712 + MIR SINE MIR 183 224 -38 1939 124 50 7 chr12 28257019 28257301 -116025188 + AluSx SINE Alu 1 294 -18 2307 117 0 0 chr12 28257681 28257990 -116024499 + AluSx SINE Alu 1 309 -3 258 125 21 21 chr12 28258116 28258164 -116024325 - U5 snRNA snRNA -68 48 1 2809 13 0 0 chr12 28258265 28258568 -116023921 + AluYb8 SINE Alu 5 307 -11 2235 123 0 7 chr12 28258986 28259295 -116023194 + AluSq SINE Alu 1 307 -6 25 0 0 0 chr12 28259361 28259386 -116023103 + AT_rich Low_complexity Low_complexity 1 25 0 238 280 75 32 chr12 28259386 28259479 -116023010 - HAL1 LINE L1 -15 2492 2396 229 194 32 43 chr12 28259482 28259575 -116022914 + (TATATG)n Simple_repeat Simple_repeat 3 94 0 1787 159 11 3 chr12 28260252 28260561 -116021928 + AluJb SINE Alu 1 311 0 258 155 0 41 chr12 28260678 28260916 -116021573 + AluJo SINE Alu 5 302 0 244 357 83 3 chr12 28261129 28261263 -116021226 - MIR SINE MIR -69 139 13 918 139 0 0 chr12 28263138 28263267 -116019222 + FLAM_C SINE Alu 6 134 -9 2385 82 0 0 chr12 28263339 28263633 -116018856 + AluSx SINE Alu 3 296 -16 1286 202 55 7 chr12 28263815 28264087 -116018402 - AluJo SINE Alu -23 289 5 573 307 115 8 chr12 28264232 28264607 -116017882 - L1ME LINE L1 -321 5800 5386 1943 148 0 13 chr12 28264675 28264978 -116017511 - AluJb SINE Alu -5 307 9 3120 157 45 29 chr12 28264995 28265837 -116016652 - L1MB7 LINE L1 0 6184 5356 2402 63 0 3 chr12 28265837 28266124 -116016365 - AluY SINE Alu -12 299 14 3120 157 45 29 chr12 28266124 28266169 -116016320 - L1MB7 LINE L1 -828 5356 5313 1670 183 52 0 chr12 28266169 28266497 -116015992 + MER7A DNA MER2_type 2 344 -2 3120 157 45 29 chr12 28266497 28266657 -116015832 - L1MB7 LINE L1 -871 5313 5157 1150 168 127 59 chr12 28266657 28266979 -116015510 + MER2 DNA MER2_type 1 344 0 3120 157 45 29 chr12 28266979 28267099 -116015390 - L1MB7 LINE L1 -1027 5157 4857 569 271 72 51 chr12 28267157 28267954 -116014535 - L1MC5 LINE L1 -35 7926 7200 866 231 28 36 chr12 28267963 28268214 -116014275 - L1MC4 LINE L1 -1029 7013 6765 310 306 97 21 chr12 28268500 28268644 -116013845 - L1M4 LINE L1 -2264 3882 3728 2316 152 193 131 chr12 28268852 28269323 -116013166 - L1MC3 LINE L1 0 7785 7345 1729 139 3 71 chr12 28269323 28269647 -116012842 - AluJb SINE Alu -10 302 1 2316 152 193 131 chr12 28269647 28269742 -116012747 - L1MC3 LINE L1 -440 7345 7257 381 208 47 38 chr12 28269742 28269848 -116012641 - MLT1F1 LTR MaLR -442 125 19 2316 152 193 131 chr12 28269848 28270143 -116012346 - L1MC3 LINE L1 -528 7257 6758 2193 113 0 0 chr12 28270452 28270745 -116011744 - AluSx SINE Alu -19 293 1 273 267 244 8 chr12 28271598 28271729 -116010760 - MIR SINE MIR -50 212 51 486 0 0 0 chr12 28271864 28271918 -116010571 + (TA)n Simple_repeat Simple_repeat 2 55 0 223 339 211 0 chr12 28272792 28272901 -116009588 - L2 LINE L2 0 3272 3141 2332 93 7 0 chr12 28273116 28273417 -116009072 - AluSp SINE Alu -10 303 1 310 281 86 0 chr12 28273577 28273705 -116008784 - MER103 DNA DNA -9 157 19 1600 165 39 14 chr12 28275743 28276028 -116006461 - AluJo SINE Alu -5 307 16 2069 130 49 11 chr12 28276963 28277310 -116005179 - MER46B DNA MER2_type -1 235 1 22 0 0 0 chr12 28277310 28277332 -116005157 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr12 28277465 28277491 -116004998 + AT_rich Low_complexity Low_complexity 1 26 0 324 375 117 38 chr12 28277682 28277790 -116004699 + L3 LINE CR1 1263 1361 -216 2033 106 60 3 chr12 28277790 28278074 -116004415 - AluSx SINE Alu -12 300 1 324 375 117 38 chr12 28278074 28278256 -116004233 + L3 LINE CR1 1361 1576 -1 209 200 18 55 chr12 28278447 28278502 -116003987 - L3 LINE CR1 -251 1326 1274 1931 163 3 7 chr12 28279144 28279445 -116003044 - AluJb SINE Alu -12 300 1 1975 107 0 11 chr12 28279793 28280074 -116002415 + AluSx SINE Alu 33 310 -2 304 268 62 31 chr12 28280150 28280247 -116002242 + MIR SINE MIR 31 130 -132 192 217 43 0 chr12 28280285 28280331 -116002158 + L2 LINE L2 3263 3310 -3 601 167 10 0 chr12 28280865 28280967 -116001522 + FLAM_A SINE Alu 8 110 -32 1733 179 0 17 chr12 28281736 28282037 -116000452 - AluJo SINE Alu -16 296 1 2437 82 0 0 chr12 28282122 28282427 -116000062 + AluSq SINE Alu 1 305 -8 818 213 40 40 chr12 28282571 28282853 -115999636 - MLT1A2 LTR MaLR 0 374 1 1000 105 0 0 chr12 28283188 28283321 -115999168 + AluSq/x SINE Alu 1 133 -179 863 123 43 0 chr12 28283849 28283987 -115998502 - AluJb SINE Alu -29 283 140 355 317 79 31 chr12 28284112 28284264 -115998225 - MIR3 SINE MIR -43 165 6 230 240 93 80 chr12 28284406 28285046 -115997443 - MER5A DNA MER1_type -5 184 33 464 198 98 81 chr12 28284423 28284446 -115998043 + MER5B DNA MER1_type 35 56 -122 4035 35 10 0 chr12 28284446 28284937 -115997552 - L1PA4 LINE L1 0 6155 5660 464 198 98 81 chr12 28284937 28285061 -115997428 + MER5B DNA MER1_type 56 172 -6 1175 146 103 5 chr12 28285144 28285357 -115997132 + MER46A DNA MER2_type 2 235 -1 554 351 123 24 chr12 28285604 28285977 -115996512 + L2 LINE L2 2420 2829 -485 350 332 187 14 chr12 28286046 28286335 -115996154 + L2 LINE L2 2934 3272 0 903 222 0 6 chr12 28286775 28286955 -115995534 + MIR SINE MIR 64 242 -20 279 351 75 21 chr12 28286969 28287157 -115995332 + L2 LINE L2 2858 3055 -258 258 246 77 0 chr12 28287131 28287196 -115995293 + L2 LINE L2 3244 3313 0 * 297 0 0 0 chr12 28287315 28287348 -115995141 + (TG)n Simple_repeat Simple_repeat 1 33 0 702 186 0 0 chr12 28287555 28287673 -115994816 - AluJb SINE Alu -20 292 175 671 200 9 0 chr12 28287750 28287865 -115994624 + FLAM_A SINE Alu 1 116 -17 280 171 99 63 chr12 28287958 28288069 -115994420 + L1ME4a LINE L1 5985 6099 -22 400 278 218 28 chr12 28288625 28288841 -115993648 - MIR SINE MIR -2 260 4 836 208 88 19 chr12 28288888 28289148 -115993341 + MER46C DNA MER2_type 18 295 -43 1925 160 0 7 chr12 28289397 28289697 -115992792 + AluJb SINE Alu 1 298 -14 2449 97 0 0 chr12 28289697 28290008 -115992481 + AluSx SINE Alu 1 311 -1 3252 128 68 27 chr12 28290212 28290799 -115991690 - LTR18B LTR ERVL 0 614 4 1255 143 8 73 chr12 28290833 28291092 -115991397 + AluJo SINE Alu 1 242 -70 603 100 55 55 chr12 28291750 28291860 -115990629 + HY1 scRNA scRNA 1 110 -2 26 0 0 0 chr12 28291860 28291886 -115990603 + AT_rich Low_complexity Low_complexity 1 26 0 2008 139 0 0 chr12 28292848 28293129 -115989360 + AluSx SINE Alu 1 281 -31 25 0 0 0 chr12 28293206 28293231 -115989258 + AT_rich Low_complexity Low_complexity 1 25 0 2111 133 3 0 chr12 28293361 28293663 -115988826 + AluJb SINE Alu 1 303 -9 210 191 0 0 chr12 28293954 28294001 -115988488 + GA-rich Low_complexity Low_complexity 2 48 0 1011 249 94 70 chr12 28295749 28295992 -115986497 + MER77 LTR ERV1 62 298 -307 2439 65 0 0 chr12 28295992 28296285 -115986204 + AluY SINE Alu 1 293 -18 1011 249 94 70 chr12 28296285 28296570 -115985919 + MER77 LTR ERV1 298 603 -2 768 154 0 0 chr12 28296742 28296859 -115985630 + FLAM_C SINE Alu 3 119 -24 198 143 0 0 chr12 28296866 28296901 -115985588 + (TA)n Simple_repeat Simple_repeat 2 36 0 324 0 0 0 chr12 28297227 28297263 -115985226 + (T)n Simple_repeat Simple_repeat 1 36 0 1779 167 37 0 chr12 28297268 28297567 -115984922 + AluJo SINE Alu 1 310 -2 1146 126 12 118 chr12 28297666 28297921 -115984568 - AluJo SINE Alu -3 309 82 23 0 0 0 chr12 28297930 28297953 -115984536 + AT_rich Low_complexity Low_complexity 1 23 0 2083 108 10 3 chr12 28298288 28298583 -115983906 + AluSq SINE Alu 1 297 -16 944 170 0 96 chr12 28298794 28298982 -115983507 - AluJb SINE Alu -14 298 129 1796 153 0 49 chr12 28298996 28299168 -115983321 - AluJb SINE Alu -19 293 141 2368 96 0 3 chr12 28299168 28299481 -115983008 - AluSx SINE Alu 0 312 1 1796 153 0 49 chr12 28299481 28299616 -115982873 - AluJb SINE Alu -171 141 1 609 89 11 0 chr12 28299808 28299898 -115982591 - L1PB4 LINE L1 -3 6153 6063 2134 110 13 3 chr12 28299967 28300268 -115982221 - AluSx SINE Alu -8 304 1 716 211 38 101 chr12 28300840 28301077 -115981412 + MIR SINE MIR 3 224 -38 1759 133 17 47 chr12 28301227 28301527 -115980962 - AluJo SINE Alu -21 291 1 1974 162 0 7 chr12 28302600 28302908 -115979581 - AluJb SINE Alu -5 307 2 186 43 0 0 chr12 28303154 28303177 -115979312 + (TC)n Simple_repeat Simple_repeat 2 24 0 213 317 150 43 chr12 28303199 28303713 -115978776 + L2 LINE L2 1880 2448 -866 1688 149 53 25 chr12 28303730 28304011 -115978478 - AluJo SINE Alu -21 291 3 2392 79 0 0 chr12 28304950 28305242 -115977247 - AluSc SINE Alu -17 292 1 1893 139 35 3 chr12 28305859 28306147 -115976342 - AluJb SINE Alu -15 297 1 2017 91 25 0 chr12 28306298 28306597 -115975892 + AluSp SINE Alu 1 306 0 2314 108 3 16 chr12 28306993 28307309 -115975180 + AluSx SINE Alu 1 312 0 1899 115 57 14 chr12 28307517 28307796 -115974693 - AluSx SINE Alu -11 301 11 2018 109 0 0 chr12 28309082 28309357 -115973132 - AluSx SINE Alu -37 275 1 927 119 0 22 chr12 28309433 28309567 -115972922 + FLAM_C SINE Alu 1 131 -2 23 0 0 0 chr12 28309571 28309594 -115972895 + AT_rich Low_complexity Low_complexity 1 23 0 881 215 6 0 chr12 28310754 28310926 -115971563 + AluSg/x SINE Alu 115 287 -23 185 0 40 0 chr12 28310932 28310957 -115971532 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 743 134 0 0 chr12 28311937 28312056 -115970433 + FLAM_C SINE Alu 1 119 -24 211 213 33 16 chr12 28312487 28312548 -115969941 - MER5A DNA MER1_type -85 104 43 2207 128 0 6 chr12 28312742 28313055 -115969434 + AluSx SINE Alu 1 311 -1 26 0 0 0 chr12 28313187 28313213 -115969276 + AT_rich Low_complexity Low_complexity 1 26 0 32 0 0 0 chr12 28313236 28313268 -115969221 + AT_rich Low_complexity Low_complexity 1 32 0 1189 123 91 16 chr12 28313446 28313618 -115968871 - LTR54 LTR ERV1 -1 509 351 2419 53 0 3 chr12 28313618 28313901 -115968588 + AluY SINE Alu 1 282 -29 415 0 0 0 chr12 28313901 28313947 -115968542 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 1189 123 91 16 chr12 28313947 28314171 -115968318 - LTR54 LTR ERV1 -159 351 21 581 181 0 11 chr12 28314176 28314410 -115968079 + AluJ SINE Alu 6 289 -23 782 156 8 8 chr12 28314444 28314572 -115967917 - AluJo SINE Alu -178 134 7 2411 86 7 0 chr12 28314684 28314985 -115967504 + AluSq SINE Alu 1 303 -10 366 164 336 0 chr12 28315071 28315181 -115967308 + MIR SINE MIR 111 257 -5 312 173 25 12 chr12 28315181 28315262 -115967227 - L1ME LINE L1 -363 5758 5677 1837 148 0 72 chr12 28315324 28315656 -115966833 + AluJb SINE Alu 1 308 -4 390 226 7 54 chr12 28316690 28316808 -115965681 + FLAM_A SINE Alu 47 130 -3 2309 88 3 0 chr12 28316821 28317117 -115965372 + AluSp SINE Alu 2 298 -15 2347 63 0 0 chr12 28317757 28318043 -115964446 - AluSg SINE Alu -24 286 1 24 32 0 0 chr12 28318694 28318725 -115963764 + GC_rich Low_complexity Low_complexity 1 31 0 23 97 0 0 chr12 28319010 28319082 -115963407 + GC_rich Low_complexity Low_complexity 1 72 0 2030 144 112 35 chr12 28321852 28322255 -115960234 - Tigger2a DNA MER2_type 0 434 1 2685 29 0 10 chr12 28322453 28322760 -115959729 - AluY SINE Alu -7 304 1 620 253 87 99 chr12 28322763 28322999 -115959490 - L1MC4a LINE L1 -1983 5825 5588 2381 69 6 25 chr12 28322999 28323316 -115959173 - AluY SINE Alu 0 311 1 620 253 87 99 chr12 28323316 28323344 -115959145 - L1MC4a LINE L1 -2220 5588 5561 1024 166 0 33 chr12 28323344 28323525 -115958964 + FAM SINE Alu 1 175 0 620 253 87 99 chr12 28323525 28323837 -115958652 - L1MC4a LINE L1 -2247 5561 5255 1657 154 36 56 chr12 28324074 28324379 -115958110 - AluJo SINE Alu -13 299 1 22 80 0 0 chr12 28324698 28324748 -115957741 + AT_rich Low_complexity Low_complexity 1 50 0 415 259 114 13 chr12 28324825 28324983 -115957506 - MIR SINE MIR 0 262 89 2511 66 0 10 chr12 28325596 28325901 -115956588 - AluY SINE Alu -9 302 1 2253 112 0 0 chr12 28326094 28326390 -115956099 + AluSx SINE Alu 6 301 -11 487 265 29 6 chr12 28327131 28327301 -115955188 - MIR SINE MIR -12 250 77 841 136 0 16 chr12 28327453 28327578 -115954911 + FRAM SINE Alu 29 151 -25 359 197 1 48 chr12 28328100 28328191 -115954298 - MIR SINE MIR -62 146 72 216 0 0 0 chr12 28328692 28328716 -115953773 + (GCTG)n Simple_repeat Simple_repeat 2 25 0 385 251 181 0 chr12 28329151 28329313 -115953176 - MIR3 SINE MIR -62 146 4 1574 188 0 54 chr12 28329639 28329964 -115952525 + AluJo SINE Alu 1 309 0 2227 95 3 0 chr12 28331382 28331699 -115950790 - AluSx SINE Alu 0 318 1 800 167 8 0 chr12 28331800 28331926 -115950563 - FLAM_C SINE Alu -16 127 1 712 183 8 0 chr12 28332006 28332132 -115950357 + AluJo/FLAM SINE Alu 5 131 -171 1786 166 10 16 chr12 28332134 28332448 -115950041 + AluJo SINE Alu 1 312 0 1329 227 58 68 chr12 28332993 28333369 -115949120 - MLT1C LTR MaLR 0 467 95 553 135 6 190 chr12 28333369 28333532 -115948957 - FLAM_C SINE Alu 0 133 1 1329 227 58 68 chr12 28333532 28333622 -115948867 - MLT1C LTR MaLR -372 95 6 1781 153 3 30 chr12 28335514 28335814 -115946675 - AluJb SINE Alu -20 292 1 24 32 0 0 chr12 28337234 28337265 -115945224 + AT_rich Low_complexity Low_complexity 1 31 0 253 185 19 0 chr12 28338448 28338502 -115943987 - L2 LINE L2 0 3272 3218 300 70 0 0 chr12 28339211 28339254 -115943235 + (TG)n Simple_repeat Simple_repeat 2 44 0 727 92 0 0 chr12 28339512 28339610 -115942879 + AluSg/x SINE Alu 208 305 -4 370 305 119 6 chr12 28340435 28340612 -115941877 - MER117 DNA MER1_type 0 197 1 245 311 89 0 chr12 28340712 28340802 -115941687 - L2 LINE L2 -22 3250 3153 1537 150 11 30 chr12 28341995 28342261 -115940228 + AluJo SINE Alu 39 299 -13 455 234 55 7 chr12 28342345 28342490 -115939999 - MIR SINE MIR -17 245 94 946 135 0 14 chr12 28342795 28342936 -115939553 + FLAM_C SINE Alu 1 139 -4 291 190 0 0 chr12 28343232 28343290 -115939199 + CT-rich Low_complexity Low_complexity 3 60 0 1633 142 38 48 chr12 28343293 28343582 -115938907 - AluJo SINE Alu -24 288 3 731 300 31 43 chr12 28343727 28343788 -115938701 + MIR SINE MIR 9 69 -193 2359 84 0 47 chr12 28343788 28344109 -115938380 - AluSg SINE Alu -3 307 2 731 300 31 43 chr12 28344109 28344304 -115938185 + MIR SINE MIR 69 262 0 299 250 0 0 chr12 28344637 28344697 -115937792 - MLT1K LTR MaLR -347 241 182 1057 205 118 72 chr12 28344771 28345030 -115937459 - MER110 LTR ERV1 0 491 212 856 131 0 182 chr12 28345030 28345266 -115937223 - 7SK RNA RNA 0 193 1 1057 205 118 72 chr12 28345266 28345337 -115937152 - MER110 LTR ERV1 -279 212 146 536 185 0 0 chr12 28346264 28346356 -115936133 - AluSg/x SINE Alu -14 295 204 304 77 0 0 chr12 28346659 28346698 -115935791 - 5S rRNA rRNA -82 39 1 1207 84 6 6 chr12 28346919 28347098 -115935391 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 1654 150 64 4 chr12 28347485 28347765 -115934724 - AluSx SINE Alu -13 299 3 661 189 75 66 chr12 28348220 28348371 -115934118 + ORSL DNA AcHobo 11 166 -109 1869 154 3 22 chr12 28348371 28348683 -115933806 - AluJo SINE Alu -6 306 1 661 189 75 66 chr12 28348683 28348743 -115933746 + ORSL DNA AcHobo 166 224 -51 447 284 71 0 chr12 28348879 28349048 -115933441 + MIR SINE MIR 32 212 -50 2278 122 0 0 chr12 28349295 28349607 -115932882 + AluSq SINE Alu 1 312 -1 449 226 24 32 chr12 28350433 28350557 -115931932 - MLT1J LTR MaLR -9 502 380 433 301 10 0 chr12 28350557 28350660 -115931829 - MER63A DNA MER1_type 0 210 107 978 128 0 0 chr12 28350663 28350844 -115931645 + FLAM_C SINE Alu 1 181 0 518 211 46 0 chr12 28350844 28350953 -115931536 - MER63A DNA MER1_type 0 114 1 658 291 54 77 chr12 28350974 28351287 -115931202 - MLT1J LTR MaLR -144 367 62 1824 207 173 106 chr12 28351288 28351901 -115930588 + MLT1E3 LTR MaLR 1 624 0 277 190 0 35 chr12 28351904 28351962 -115930527 - MLT1J LTR MaLR -450 61 6 2401 92 3 0 chr12 28352068 28352363 -115930126 - AluSx SINE Alu -16 296 1 1532 238 153 11 chr12 28352363 28352742 -115929747 - MLT1E LTR MaLR -160 433 1 3342 146 14 13 chr12 28352771 28353327 -115929162 - L1MA5 LINE L1 -2 6298 5742 332 276 84 55 chr12 28353352 28353768 -115928721 + MLT1L LTR MaLR 110 607 -2 436 255 39 0 chr12 28354386 28354488 -115928001 + L2 LINE L2 3166 3271 -1 208 275 275 0 chr12 28354550 28354624 -115927865 + L2 LINE L2 3148 3200 -72 2288 149 44 44 chr12 28354624 28354698 -115927791 - MSTA LTR MaLR 0 428 355 1734 153 34 20 chr12 28354698 28354993 -115927496 - AluJb SINE Alu -13 299 1 2288 149 44 44 chr12 28354993 28355346 -115927143 - MSTA LTR MaLR -72 356 1 208 275 275 0 chr12 28355346 28355362 -115927127 + L2 LINE L2 3200 3263 -9 262 241 0 0 chr12 28355696 28355754 -115926735 - MER63 DNA MER1_type -26 1034 977 536 135 0 0 chr12 28355756 28355830 -115926659 - MER63 DNA MER1_type -86 750 677 599 125 10 0 chr12 28356183 28356287 -115926202 + (TCCCC)n Simple_repeat Simple_repeat 3 107 0 1721 157 3 45 chr12 28356291 28356577 -115925912 - AluJo SINE Alu -38 274 1 2414 137 213 27 chr12 28357186 28357698 -115924791 - LTR18B LTR ERVL -6 608 2 340 269 28 9 chr12 28358153 28358261 -115924228 - MER5A DNA MER1_type -71 118 9 414 73 0 0 chr12 28358490 28358545 -115923944 + AluSx SINE Alu 2 56 -255 4015 117 28 0 chr12 28358545 28359109 -115923380 - LTR19B LTR ERV1 0 580 1 2035 80 8 0 chr12 28359109 28359358 -115923131 + AluSx SINE Alu 52 302 -10 196 233 167 0 chr12 28360785 28360845 -115921644 + MIR SINE MIR 81 150 -58 1698 136 0 19 chr12 28361734 28361999 -115920490 - Tigger5 DNA MER2_type 0 2323 2064 * 1816 213 0 3 chr12 28361969 28362297 -115920192 - Tigger5 DNA MER2_type -1996 327 1 382 191 0 0 chr12 28362370 28362433 -115920056 - MER94 DNA DNA -70 64 2 231 356 0 10 chr12 28362525 28362626 -115919863 + MIR SINE MIR 6 105 -157 231 238 16 0 chr12 28362773 28362836 -115919653 + MIR SINE MIR 91 154 -108 1602 252 169 11 chr12 28364250 28364718 -115917771 - MLT1F LTR MaLR 0 542 1 387 325 38 79 chr12 28364718 28365084 -115917405 - MLT1F-int LTR MaLR 0 1371 1021 2300 103 0 0 chr12 28365336 28365627 -115916862 - AluSc SINE Alu -18 291 1 1674 150 0 104 chr12 28365627 28365954 -115916535 - AluJb SINE Alu -19 293 1 1520 89 11 0 chr12 28366356 28366567 -115915922 - AluSg/x SINE Alu 0 304 92 1369 109 0 0 chr12 28366567 28366742 -115915747 - AluSq SINE Alu -138 175 1 696 286 18 5 chr12 28366753 28366977 -115915512 - MLT1F-int LTR MaLR -860 511 285 329 283 43 0 chr12 28367049 28367141 -115915348 - MLT1F-int LTR MaLR -1275 96 1 277 339 62 0 chr12 28367178 28367290 -115915199 - MIR SINE MIR -113 149 31 315 237 227 31 chr12 28367479 28367576 -115914913 - MIR SINE MIR -117 145 30 437 260 65 32 chr12 28367675 28367829 -115914660 + MIR SINE MIR 93 251 -11 21 0 0 0 chr12 28369966 28369987 -115912502 + AT_rich Low_complexity Low_complexity 1 21 0 1362 108 46 0 chr12 28371013 28371208 -115911281 - L1PA14 LINE L1 0 6161 5958 2218 110 0 0 chr12 28371217 28371509 -115910980 - AluSq SINE Alu -19 294 3 2103 138 3 0 chr12 28372063 28372374 -115910115 + AluSx SINE Alu 1 312 0 24 0 0 0 chr12 28372374 28372398 -115910091 + AT_rich Low_complexity Low_complexity 1 24 0 12326 118 7 12 chr12 28372415 28374212 -115908277 + Tigger1 DNA MER2_type 1 1789 -629 1172 102 94 129 chr12 28374210 28374466 -115908023 + Tigger1 DNA MER2_type 2172 2418 0 * 2028 157 3 0 chr12 28375178 28375483 -115907006 + AluJb SINE Alu 1 306 -6 1593 164 14 27 chr12 28375850 28376143 -115906346 - AluJo SINE Alu -16 296 8 657 236 37 65 chr12 28376152 28376330 -115906159 - HAL1 LINE L1 -4 2503 2332 2363 96 3 6 chr12 28376330 28376644 -115905845 - AluSq SINE Alu 0 313 1 657 236 37 65 chr12 28376644 28376711 -115905778 - HAL1 LINE L1 -175 2332 2265 402 187 103 0 chr12 28376736 28376843 -115905646 - HAL1 LINE L1 -347 2160 2043 1939 170 3 0 chr12 28378542 28378854 -115903635 - AluSp SINE Alu 0 313 1 21 0 0 0 chr12 28380219 28380240 -115902249 + AT_rich Low_complexity Low_complexity 1 21 0 2152 130 0 0 chr12 28381127 28381427 -115901062 - AluSx SINE Alu -12 300 1 341 287 41 33 chr12 28381457 28381579 -115900910 - L2 LINE L2 0 3313 3191 351 0 0 0 chr12 28381832 28381871 -115900618 + (CA)n Simple_repeat Simple_repeat 2 40 0 398 213 96 25 chr12 28381991 28382119 -115900370 - L1ME4a LINE L1 -4 6087 1233 1769 140 49 18 chr12 28382161 28382447 -115900042 + AluJb SINE Alu 7 301 -11 433 292 66 20 chr12 28383967 28384167 -115898322 - MIR SINE MIR -48 214 2 250 398 18 0 chr12 28384167 28384280 -115898209 + MIR3 SINE MIR 40 154 -54 14171 128 12 3 chr12 28384455 28387377 -115895112 - L1PA10 LINE L1 0 6168 3230 1956 179 48 32 chr12 28387377 28387918 -115894571 + MLT2A2 LTR ERVL 4 554 0 10900 188 12 13 chr12 28387921 28390106 -115892383 - L1PA10 LINE L1 -2916 3230 1048 3028 130 27 0 chr12 28390313 28390758 -115891731 + LTR32 LTR ERVL 15 471 0 265 343 45 26 chr12 28391279 28391554 -115890935 - L2 LINE L2 -235 3037 2701 800 176 8 23 chr12 28391921 28392052 -115890437 - FLAM_C SINE Alu -4 129 1 29 28 0 0 chr12 28392061 28392097 -115890392 + AT_rich Low_complexity Low_complexity 1 36 0 2126 174 14 5 chr12 28392100 28392468 -115890021 - L1PA16 LINE L1 -5 6161 5791 288 296 139 0 chr12 28392561 28392676 -115889813 - L2 LINE L2 -1 3271 3141 760 231 19 52 chr12 28392688 28392774 -115889715 - MER6B DNA MER2_type -660 205 118 1856 152 10 23 chr12 28392774 28393077 -115889412 - AluJo SINE Alu -13 299 1 760 231 19 52 chr12 28393077 28393202 -115889287 - MER6B DNA MER2_type -747 118 1 322 325 150 49 chr12 28393296 28393702 -115888787 + LTR67 LTR ERVL 109 555 -2 819 147 41 100 chr12 28394106 28394276 -115888213 - AluSg/x SINE Alu -19 293 134 2258 191 19 40 chr12 28394459 28394940 -115887549 + MLT1D LTR MaLR 27 497 -8 6861 94 20 4 chr12 28395291 28396733 -115885756 - L1PA10 LINE L1 -4 6164 4707 593 257 73 116 chr12 28396812 28397303 -115885186 + LTR67 LTR ERVL 82 551 -6 592 341 70 61 chr12 28397303 28397370 -115885119 - L2 LINE L2 -451 2863 2798 420 20 0 0 chr12 28397370 28397419 -115885070 + (TAA)n Simple_repeat Simple_repeat 2 50 0 1631 191 7 0 chr12 28397422 28397705 -115884784 - AluJo SINE Alu -25 287 3 592 341 70 61 chr12 28397705 28398320 -115884169 - L2 LINE L2 -517 2797 2171 967 246 177 35 chr12 28398461 28398867 -115883622 + LTR16C LTR ERVL 28 491 0 188 309 173 25 chr12 28399752 28399833 -115882656 - L2 LINE L2 -20 3252 3160 712 211 0 0 chr12 28402306 28402429 -115880060 - FLAM_C SINE Alu -18 125 3 1358 218 84 20 chr12 28403364 28403722 -115878767 - L1MA10 LINE L1 -29 6305 5925 688 245 20 7 chr12 28404236 28404383 -115878106 + MER58B DNA MER1_type 193 341 0 193 310 69 0 chr12 28404392 28404479 -115878010 - L2 LINE L2 -733 2581 2489 185 180 20 0 chr12 28404544 28404594 -115877895 + (TG)n Simple_repeat Simple_repeat 1 51 0 276 311 94 9 chr12 28406549 28406655 -115875834 - L2 LINE L2 -1 3312 3198 1967 157 16 0 chr12 28407952 28408257 -115874232 + AluSx SINE Alu 1 310 -2 354 278 22 0 chr12 28411251 28411341 -115871148 + MER5A DNA MER1_type 9 100 -89 204 283 53 80 chr12 28411639 28411752 -115870737 + L2 LINE L2 3204 3313 0 4733 179 31 42 chr12 28411993 28412176 -115870313 - L1MB3 LINE L1 0 6183 5999 7212 50 11 29 chr12 28412176 28413745 -115868744 + SVA Other Other 1 1386 0 4733 179 31 42 chr12 28413745 28414023 -115868466 - L1MB3 LINE L1 -184 5999 5719 2161 118 147 21 chr12 28414023 28414403 -115868086 - MSTA LTR MaLR 0 428 1 4733 179 31 42 chr12 28414403 28415577 -115866912 - L1MB3 LINE L1 -464 5719 4569 972 251 119 22 chr12 28416626 28417028 -115865461 - LTR16A LTR ERVL -9 441 1 2136 96 24 3 chr12 28417100 28417224 -115865265 + AluY SINE Alu 1 121 -190 396 0 0 0 chr12 28417224 28417268 -115865221 + (CA)n Simple_repeat Simple_repeat 2 45 0 2136 96 24 3 chr12 28417268 28417435 -115865054 + AluY SINE Alu 121 298 -13 13484 165 41 26 chr12 28417680 28419652 -115862837 - L1MA8 LINE L1 -12 7300 5359 192 40 0 0 chr12 28419652 28419677 -115862812 + (TA)n Simple_repeat Simple_repeat 2 26 0 13484 165 41 26 chr12 28419677 28420376 -115862113 - L1MA8 LINE L1 -1953 5359 4672 2215 102 0 0 chr12 28420376 28420682 -115861807 + AluSx SINE Alu 1 306 0 13484 165 41 26 chr12 28420682 28421966 -115860523 - L1MA8 LINE L1 -2640 4672 3284 1639 175 3 28 chr12 28421966 28422251 -115860238 - AluJo SINE Alu -34 278 1 13484 165 41 26 chr12 28422251 28422646 -115859843 - L1MA8 LINE L1 -4028 3284 2896 1826 178 3 20 chr12 28422715 28423019 -115859470 - AluJo SINE Alu -13 299 1 671 271 12 91 chr12 28423081 28423160 -115859329 - L1MA8 LINE L1 -4907 2191 2107 2386 106 0 0 chr12 28423160 28423471 -115859018 + AluSx SINE Alu 1 311 -1 671 271 12 91 chr12 28423471 28423964 -115858525 - L1MA8 LINE L1 -4991 2107 1630 272 329 19 25 chr12 28424710 28424871 -115857618 - L1MA8 LINE L1 -5981 1117 958 225 125 0 42 chr12 28425521 28425569 -115856920 + L1MC4 LINE L1 6658 6703 -1339 647 289 57 30 chr12 28425588 28425768 -115856721 - L1MC4a LINE L1 -813 5333 5682 2385 74 0 13 chr12 28425768 28426078 -115856411 - AluY SINE Alu -5 306 1 647 289 57 30 chr12 28426078 28426777 -115855712 - L1MC4a LINE L1 -463 5683 5004 230 277 0 0 chr12 28426777 28426842 -115855647 + MIR SINE MIR 129 193 -69 404 256 39 45 chr12 28426947 28427103 -115855386 - L1MC4a LINE L1 -1815 4331 4177 2137 136 0 0 chr12 28427318 28427620 -115854869 + AluJb SINE Alu 1 302 -10 970 272 54 29 chr12 28428104 28428552 -115853937 - HAL1 LINE L1 -806 1701 1243 788 178 0 15 chr12 28428821 28428956 -115853533 + FLAM_C SINE Alu 1 133 0 293 231 133 79 chr12 28429127 28429607 -115852882 + L1ME4a LINE L1 5576 6081 -40 4873 138 16 25 chr12 28429643 28430552 -115851937 - L1MA6 LINE L1 0 6300 5400 1079 163 56 60 chr12 28430552 28430757 -115851732 + MSTB2 LTR MaLR 1 206 -251 1355 90 25 94 chr12 28430757 28431001 -115851488 - MER30 DNA MER1_type 0 230 4 1079 163 56 60 chr12 28431001 28431047 -115851442 + MSTB2 LTR MaLR 206 251 -206 4000 228 45 40 chr12 28431047 28432292 -115850197 - L1 LINE L1 -2776 4789 3552 2074 110 4 7 chr12 28432292 28432600 -115849889 - AluSc SINE Alu 0 307 1 4000 228 45 40 chr12 28432600 28433763 -115848726 - L1 LINE L1 -4013 3552 2396 214 321 0 0 chr12 28434574 28434630 -115847859 - MIR SINE MIR -152 110 55 252 225 58 17 chr12 28434889 28435009 -115847480 + (TA)n Simple_repeat Simple_repeat 1 125 0 2151 120 14 0 chr12 28435140 28435431 -115847058 + AluSx SINE Alu 1 295 -17 2134 107 7 0 chr12 28436089 28436378 -115846111 - AluSx SINE Alu -21 291 1 1855 109 25 11 chr12 28436479 28436754 -115845735 + AluSc SINE Alu 20 298 -11 270 339 8 65 chr12 28436822 28436946 -115845543 - MIR3 SINE MIR -2 206 90 724 208 52 5 chr12 28437187 28437379 -115845110 + L1MC3 LINE L1 7585 7785 0 261 0 0 0 chr12 28438445 28438474 -115844015 + (TG)n Simple_repeat Simple_repeat 2 30 0 1692 118 7 0 chr12 28438678 28438948 -115843541 + L1PB4 LINE L1 5420 5691 -465 2506 61 0 19 chr12 28438976 28439288 -115843201 - AluY SINE Alu -5 306 1 2595 157 6 10 chr12 28439312 28439796 -115842693 + L1PB4 LINE L1 5675 6156 0 445 337 83 0 chr12 28439919 28440100 -115842389 + LTR33 LTR ERVL 2 197 -324 370 225 99 28 chr12 28440159 28440341 -115842148 + LTR33 LTR ERVL 327 521 0 297 351 32 22 chr12 28440387 28440572 -115841917 - MIR SINE MIR -54 208 19 310 311 161 22 chr12 28441878 28442058 -115840431 + L2 LINE L2 2428 2632 -682 1719 192 11 50 chr12 28442066 28442446 -115840043 - MLT1A1 LTR MaLR 0 365 1 3245 153 20 77 chr12 28442709 28443441 -115839048 - LTR8 LTR ERV1 0 691 1 181 329 89 62 chr12 28443791 28443937 -115838552 + L2 LINE L2 2866 3015 -257 5344 119 13 35 chr12 28444000 28444914 -115837575 - MER4D LTR ERV1 -9 894 1 2675 158 176 14 chr12 28444987 28445613 -115836876 - LTR8A LTR ERV1 0 727 1 267 151 159 103 chr12 28446138 28446264 -115836225 + MLT1F LTR MaLR 410 542 0 277 348 17 9 chr12 28446405 28446520 -115835969 + LTR67 LTR ERVL 100 215 -342 414 384 33 0 chr12 28447084 28447235 -115835254 - L2 LINE L2 -1 3271 3116 1767 176 22 11 chr12 28447394 28447753 -115834736 - MLT1A1 LTR MaLR -2 363 1 303 347 79 73 chr12 28447910 28448316 -115834173 - L2 LINE L2 -559 2755 2340 327 49 0 0 chr12 28448316 28448357 -115834132 + (TG)n Simple_repeat Simple_repeat 1 41 0 303 347 79 73 chr12 28448357 28448693 -115833796 - L2 LINE L2 -974 2340 2008 2091 125 3 13 chr12 28448914 28449219 -115833270 - AluSx SINE Alu -10 302 1 1079 92 7 0 chr12 28449344 28449486 -115833003 + AluSp SINE Alu 2 144 -169 315 265 140 70 chr12 28449486 28449686 -115832803 + L2 LINE L2 2489 2702 -612 681 372 54 30 chr12 28449781 28449812 -115832677 + L2 LINE L2 2857 2886 -386 2451 53 13 0 chr12 28449812 28450112 -115832377 - AluY SINE Alu -7 304 1 681 372 54 30 chr12 28450112 28450486 -115832003 + L2 LINE L2 2886 3272 0 277 299 23 11 chr12 28450516 28450603 -115831886 + L3 LINE CR1 1474 1561 -16 1000 261 32 19 chr12 28451911 28452225 -115830264 - LTR16A LTR ERVL 0 450 133 405 39 0 0 chr12 28452330 28452381 -115830108 + (TG)n Simple_repeat Simple_repeat 1 51 0 703 216 45 61 chr12 28452397 28452707 -115829782 + L1MC5 LINE L1 7634 7938 -23 1684 167 30 3 chr12 28453265 28453601 -115828888 + L1MA5 LINE L1 5948 6292 -8 216 278 28 28 chr12 28454519 28454627 -115827862 + CT-rich Low_complexity Low_complexity 1 108 0 5209 131 58 26 chr12 28455173 28456511 -115825978 + L1MA5A LINE L1 4561 5957 -340 2222 93 10 0 chr12 28456511 28456800 -115825689 + AluSx SINE Alu 1 292 -20 5209 131 58 26 chr12 28456800 28457151 -115825338 + L1MA5A LINE L1 5957 6295 -2 2459 65 3 13 chr12 28457914 28458223 -115824266 + AluY SINE Alu 1 306 -5 614 302 36 22 chr12 28458303 28458525 -115823964 - MIR SINE MIR -29 233 9 1058 269 49 59 chr12 28460145 28460636 -115821853 + L2 LINE L2 2815 3300 -13 193 80 0 0 chr12 28462336 28462361 -115820128 - L2 LINE L2 -20 3293 3269 556 286 15 77 chr12 28462886 28463159 -115819330 + MIR SINE MIR 2 257 -5 286 313 111 0 chr12 28463245 28463344 -115819145 - MIR SINE MIR -92 170 61 550 239 46 0 chr12 28463371 28463501 -115818988 - MIR SINE MIR -6 256 121 194 313 60 90 chr12 28464374 28464478 -115818011 - L2 LINE L2 -1 3312 3213 451 189 226 9 chr12 28464478 28464584 -115817905 - FLAM_A SINE Alu -4 129 1 194 313 60 90 chr12 28464584 28464645 -115817844 - L2 LINE L2 -100 3213 3152 187 274 71 12 chr12 28464748 28464832 -115817657 - MIR3 SINE MIR -117 91 3 24 0 0 0 chr12 28465229 28465253 -115817236 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr12 28465606 28465632 -115816857 + AT_rich Low_complexity Low_complexity 1 26 0 329 176 14 0 chr12 28465780 28465854 -115816635 + (TG)n Simple_repeat Simple_repeat 2 76 0 366 345 52 11 chr12 28466350 28466524 -115815965 + MIR SINE MIR 21 201 -61 219 151 27 5 chr12 28466538 28466615 -115815874 - L2 LINE L2 -5 3308 3191 1860 188 3 6 chr12 28467781 28468127 -115814362 - MLT1A1 LTR MaLR 0 365 21 689 262 87 34 chr12 28468308 28468562 -115813927 - MIR SINE MIR -1 261 3 200 213 21 0 chr12 28468601 28468648 -115813841 + CT-rich Low_complexity Low_complexity 2 49 0 23 68 0 0 chr12 28469532 28469576 -115812913 + AT_rich Low_complexity Low_complexity 1 44 0 281 335 75 22 chr12 28470388 28470666 -115811823 - MLT1L LTR MaLR -180 435 143 198 325 158 60 chr12 28471124 28471422 -115811067 + L2 LINE L2 2987 3313 0 227 189 0 0 chr12 28471704 28471741 -115810748 + L2 LINE L2 3221 3257 -15 247 282 0 43 chr12 28471747 28471864 -115810625 + CT-rich Low_complexity Low_complexity 3 114 0 1340 186 16 19 chr12 28471907 28472230 -115810259 + MER33 DNA MER1_type 3 324 0 230 136 23 0 chr12 28472682 28472726 -115809763 + (TA)n Simple_repeat Simple_repeat 1 45 0 445 132 8 147 chr12 28472755 28472884 -115809605 + L1MC1 LINE L1 4094 4204 -1942 6144 141 22 4 chr12 28472893 28474023 -115808466 + L1MC1 LINE L1 5185 6333 0 384 193 166 35 chr12 28474023 28474168 -115808321 - MER103 DNA DNA 0 166 3 23 33 0 0 chr12 28474818 28474848 -115807641 + AT_rich Low_complexity Low_complexity 1 30 0 3816 171 33 36 chr12 28475254 28476229 -115806260 + L1MB7 LINE L1 5157 6128 -56 307 375 69 17 chr12 28477049 28477281 -115805208 + MIR SINE MIR 2 245 -17 361 268 131 16 chr12 28477349 28477532 -115804957 + L1ME LINE L1 5574 5777 -344 1058 150 82 0 chr12 28477626 28477920 -115804569 + L1MB2 LINE L1 5163 5474 -709 279 0 0 0 chr12 28477922 28477953 -115804536 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 680 188 8 23 chr12 28477957 28478090 -115804399 + FLAM_C SINE Alu 1 131 -12 3368 166 33 18 chr12 28478100 28478440 -115804049 + L1MB2 LINE L1 5486 5819 -352 2652 42 0 0 chr12 28478440 28478749 -115803740 + AluY SINE Alu 1 309 -2 3368 166 33 18 chr12 28478749 28479076 -115803413 + L1MB2 LINE L1 5819 6163 -8 1686 182 11 0 chr12 28479240 28479526 -115802963 - AluJo SINE Alu -23 289 1 456 270 132 34 chr12 28480684 28480888 -115801601 + MIR SINE MIR 20 243 -19 2341 104 0 0 chr12 28481002 28481299 -115801190 - AluSg SINE Alu -13 297 1 2454 24 0 0 chr12 28481659 28481949 -115800540 - L1PA2 LINE L1 0 6155 5866 1933 183 0 6 chr12 28482311 28482622 -115799867 - AluJb SINE Alu -3 309 1 338 313 199 12 chr12 28482868 28483034 -115799455 - L2 LINE L2 -1 3271 3075 345 294 65 24 chr12 28483045 28483215 -115799274 + MIR SINE MIR 58 234 -28 563 279 61 6 chr12 28483534 28483699 -115798790 + L2 LINE L2 2899 3072 -241 762 305 60 0 chr12 28483706 28483939 -115798550 + MIR SINE MIR 1 247 -15 2112 121 0 0 chr12 28484225 28484539 -115797950 + AluSx SINE Alu 1 314 0 259 253 0 0 chr12 28484692 28484767 -115797722 + MER103 DNA DNA 11 85 -81 186 338 136 52 chr12 28485458 28485671 -115796818 - L2 LINE L2 -222 3050 2820 201 133 0 0 chr12 28486051 28486081 -115796408 + (CATA)n Simple_repeat Simple_repeat 3 32 0 308 314 146 22 chr12 28486178 28486315 -115796174 - L2 LINE L2 0 3272 3119 1541 205 30 19 chr12 28487256 28487617 -115794872 + MLT1A1 LTR MaLR 1 365 0 376 222 77 26 chr12 28487820 28487937 -115794552 - MLT1K LTR MaLR -320 268 146 24 0 0 0 chr12 28488030 28488054 -115794435 + AT_rich Low_complexity Low_complexity 1 24 0 2279 117 0 0 chr12 28488068 28488377 -115794112 + AluSx SINE Alu 1 309 -3 2393 109 0 0 chr12 28488388 28488700 -115793789 + AluSx SINE Alu 1 312 0 964 192 145 41 chr12 28488700 28489065 -115793424 - LTR37A LTR ERV1 -23 403 1 2001 132 6 38 chr12 28489879 28490227 -115792262 - AluSx SINE Alu 0 338 1 195 42 0 0 chr12 28491580 28491604 -115790885 + (TG)n Simple_repeat Simple_repeat 1 24 0 210 118 0 0 chr12 28491604 28491638 -115790851 + (GA)n Simple_repeat Simple_repeat 2 35 0 680 271 10 25 chr12 28491870 28492069 -115790420 + MIR SINE MIR 21 216 -46 346 273 83 41 chr12 28493232 28493353 -115789136 - L2 LINE L2 -5 3267 3142 24 0 0 0 chr12 28495198 28495222 -115787267 + AT_rich Low_complexity Low_complexity 1 24 0 5099 76 10 0 chr12 28495665 28496349 -115786140 + L1PA13 LINE L1 5472 6162 -1 24 53 0 0 chr12 28498203 28498241 -115784248 + AT_rich Low_complexity Low_complexity 1 38 0 2257 95 30 0 chr12 28499321 28499616 -115782873 + AluSx SINE Alu 1 304 -8 387 105 0 0 chr12 28500153 28500210 -115782279 + (TA)n Simple_repeat Simple_repeat 1 57 0 232 49 73 0 chr12 28500238 28500279 -115782210 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 251 143 0 18 chr12 28500343 28500399 -115782090 + (TA)n Simple_repeat Simple_repeat 2 56 0 319 37 19 37 chr12 28501109 28501163 -115781326 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 571 286 98 10 chr12 28501209 28501412 -115781077 - MIR SINE MIR -13 249 29 209 215 9 56 chr12 28501621 28501728 -115780761 + (TTAAA)n Simple_repeat Simple_repeat 4 105 0 412 307 34 39 chr12 28502791 28502996 -115779493 + MIR3 SINE MIR 3 206 -2 383 0 21 0 chr12 28503111 28503158 -115779331 + (TC)n Simple_repeat Simple_repeat 1 48 0 300 53 0 0 chr12 28503348 28503386 -115779103 + (GA)n Simple_repeat Simple_repeat 2 39 0 511 265 8 43 chr12 28503978 28504123 -115778366 - MIR SINE MIR -61 147 20 456 281 117 93 chr12 28508996 28509741 -115772748 - L1M2 LINE L1 -5716 1133 371 195 42 0 0 chr12 28510669 28510693 -115771796 + (CA)n Simple_repeat Simple_repeat 2 25 0 243 0 0 0 chr12 28510900 28510927 -115771562 + (A)n Simple_repeat Simple_repeat 1 27 0 324 0 0 0 chr12 28512970 28513006 -115769483 + (TG)n Simple_repeat Simple_repeat 1 36 0 270 0 0 0 chr12 28513005 28513035 -115769454 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 225 0 0 0 chr12 28518326 28518351 -115764138 + (T)n Simple_repeat Simple_repeat 1 25 0 296 297 0 40 chr12 28518506 28518607 -115763882 + GA-rich Low_complexity Low_complexity 2 98 0 255 253 0 72 chr12 28520058 28520141 -115762348 - L2 LINE L2 0 3272 3196 412 270 98 43 chr12 28520230 28520393 -115762096 + L2 LINE L2 3142 3313 0 250 331 95 34 chr12 28522017 28522165 -115760324 + MIR3 SINE MIR 2 158 -50 4357 99 3 2 chr12 28522331 28522959 -115759530 + L1PB2 LINE L1 5523 6151 0 943 244 103 63 chr12 28524427 28525010 -115757479 + MLT1L LTR MaLR 3 608 -7 290 219 0 31 chr12 28525701 28525765 -115756724 + HsTC2 DNA Tc2 80 141 -1757 * 733 215 135 33 chr12 28525764 28526054 -115756435 + HsTC2 DNA Tc2 1282 1541 -357 1856 168 9 25 chr12 28526054 28526370 -115756119 + AluJo SINE Alu 1 311 -1 733 215 135 33 chr12 28526370 28526478 -115756011 + HsTC2 DNA Tc2 1541 1898 0 2204 110 0 10 chr12 28526525 28526825 -115755664 - AluSq SINE Alu -15 298 2 343 360 18 6 chr12 28526888 28527052 -115755437 - LTR67 LTR ERVL -347 210 45 673 257 50 30 chr12 28528279 28528714 -115753775 - MLT1H LTR MaLR 0 549 13 6507 164 17 26 chr12 28529018 28529049 -115753440 + L1MB1 LINE L1 3930 3960 -2208 2143 124 0 17 chr12 28529049 28529348 -115753141 + AluSx SINE Alu 1 294 -18 6507 164 17 26 chr12 28529348 28531062 -115751427 + L1MB1 LINE L1 3960 5689 -479 1773 171 3 23 chr12 28531062 28531371 -115751118 - AluJo SINE Alu -9 303 1 6507 164 17 26 chr12 28531371 28531603 -115750886 + L1MB1 LINE L1 5689 5922 -246 692 163 32 8 chr12 28531603 28531726 -115750763 + FLAM_C SINE Alu 1 126 -7 6507 164 17 26 chr12 28531726 28532004 -115750485 + L1MB1 LINE L1 5922 6165 -3 260 373 45 70 chr12 28532276 28532520 -115749969 - L2 LINE L2 -2 3270 3033 386 259 76 70 chr12 28533021 28533206 -115749283 + MER5A DNA MER1_type 1 186 -3 576 229 21 42 chr12 28533216 28533360 -115749129 + MER5B DNA MER1_type 36 176 -2 409 329 161 0 chr12 28533370 28533525 -115748964 - MER5A DNA MER1_type 0 189 10 205 162 0 0 chr12 28534002 28534039 -115748450 + (CA)n Simple_repeat Simple_repeat 1 37 0 1917 154 112 30 chr12 28534047 28534429 -115748060 + MLT2C2 LTR ERVL 1 423 -41 222 37 0 0 chr12 28534429 28534456 -115748033 + (TCTCTG)n Simple_repeat Simple_repeat 2 28 0 1917 154 112 30 chr12 28534456 28534502 -115747987 + MLT2C2 LTR ERVL 423 464 0 680 305 68 54 chr12 28534666 28535092 -115747397 + L2 LINE L2 2882 3313 0 183 333 25 25 chr12 28535124 28535205 -115747284 - MER5A DNA MER1_type -26 163 83 284 328 15 45 chr12 28535344 28535481 -115747008 + MER5B DNA MER1_type 36 179 -10 561 321 100 6 chr12 28535622 28535961 -115746528 - MLT1L LTR MaLR -26 589 219 308 24 0 24 chr12 28536315 28536357 -115746132 + (TG)n Simple_repeat Simple_repeat 2 42 0 2123 123 3 23 chr12 28536610 28536919 -115745570 + AluSx SINE Alu 1 303 -9 1681 138 190 11 chr12 28537067 28537430 -115745059 + MSTA LTR MaLR 1 428 0 3581 87 47 2 chr12 28539679 28540209 -115742280 - MER41A LTR ERV1 0 554 1 370 364 87 18 chr12 28540623 28540909 -115741580 + L2 LINE L2 2656 2961 -353 199 317 67 94 chr12 28541004 28541184 -115741305 + L2 LINE L2 3090 3264 -8 23 0 0 0 chr12 28541237 28541260 -115741229 + AT_rich Low_complexity Low_complexity 1 23 0 316 93 0 173 chr12 28541287 28541362 -115741127 - MER33 DNA MER1_type -1 362 301 372 199 286 19 chr12 28541441 28541647 -115740842 - L1MEd LINE L1 -5270 849 589 27 29 0 0 chr12 28541839 28541873 -115740616 + AT_rich Low_complexity Low_complexity 1 34 0 33653 33 0 5 chr12 28541873 28546959 -115735530 - L1PA3 LINE L1 0 6155 1094 797 61 18 0 chr12 28546941 28547055 -115735434 - L1PA3 LINE L1 -6030 116 1 * 1004 211 57 8 chr12 28547156 28547421 -115735068 - MER33 DNA MER1_type -46 278 1 315 96 0 0 chr12 28547794 28547846 -115734643 + (TC)n Simple_repeat Simple_repeat 1 52 0 272 242 16 0 chr12 28548141 28548203 -115734286 + (CAGA)n Simple_repeat Simple_repeat 4 66 0 2006 154 7 0 chr12 28548459 28548758 -115733731 + AluJb SINE Alu 1 301 -11 24 0 0 0 chr12 28548977 28549001 -115733488 + AT_rich Low_complexity Low_complexity 1 24 0 1456 190 70 18 chr12 28550499 28550883 -115731606 - L1MA7 LINE L1 -22 6269 5866 501 265 74 6 chr12 28550898 28551060 -115731429 - MIR SINE MIR -39 223 51 256 235 0 0 chr12 28551124 28551175 -115731314 - MER45 DNA AcHobo 0 1581 1531 420 216 128 0 chr12 28551306 28551408 -115731081 - MER45 DNA AcHobo -1466 115 1 271 371 48 30 chr12 28551442 28551609 -115730880 - L2 LINE L2 -62 3210 3041 198 287 57 82 chr12 28553294 28553416 -115729073 + L2 LINE L2 3139 3257 -15 228 67 0 0 chr12 28553445 28553475 -115729014 + (A)n Simple_repeat Simple_repeat 1 30 0 355 282 83 88 chr12 28555490 28555887 -115726602 + L2 LINE L2 2166 2560 -754 204 300 100 0 chr12 28555935 28555995 -115726494 + L2 LINE L2 3136 3201 -71 1205 235 74 60 chr12 28556039 28556542 -115725947 - MLT1H LTR MaLR -3 546 37 361 276 62 100 chr12 28556642 28556852 -115725637 + MIR3 SINE MIR 2 203 -5 1436 188 0 85 chr12 28558748 28558938 -115723551 - AluJb SINE Alu 0 312 162 414 0 0 0 chr12 28558938 28558984 -115723505 + (TA)n Simple_repeat Simple_repeat 2 47 0 1436 188 0 85 chr12 28558984 28559133 -115723356 - AluJb SINE Alu -150 162 2 201 301 24 48 chr12 28559432 28559515 -115722974 - L2 LINE L2 -1 3271 3191 286 344 151 5 chr12 28559871 28560057 -115722432 + MIR SINE MIR 6 218 -44 1094 190 35 0 chr12 28560243 28560443 -115722046 - AluJb SINE Alu -19 293 87 840 307 43 0 chr12 28561455 28561686 -115720803 + MIR SINE MIR 22 262 0 1872 197 42 50 chr12 28561707 28561828 -115720661 - MLT1F1 LTR MaLR -3 564 444 2735 131 21 0 chr12 28561828 28562247 -115720242 - MSTA LTR MaLR 0 428 1 1872 197 42 50 chr12 28562247 28562674 -115719815 - MLT1F1 LTR MaLR -123 444 25 2114 145 0 0 chr12 28563645 28563948 -115718541 - AluJo SINE Alu -9 303 1 220 308 103 65 chr12 28564430 28564478 -115718011 - L2 LINE L2 -76 3196 3151 1970 129 7 20 chr12 28564478 28564773 -115717716 + AluSx SINE Alu 1 291 -21 220 308 103 65 chr12 28564773 28565039 -115717450 - L2 LINE L2 -121 3151 2870 285 284 42 67 chr12 28565039 28565256 -115717233 + MIR SINE MIR 4 218 -44 225 0 0 0 chr12 28565395 28565420 -115717069 + (TC)n Simple_repeat Simple_repeat 2 26 0 310 300 0 0 chr12 28566688 28566768 -115715721 - L2 LINE L2 -1 3312 3233 391 241 166 14 chr12 28566816 28566961 -115715528 - MIR SINE MIR -84 178 12 22 70 0 0 chr12 28567917 28567960 -115714529 + AT_rich Low_complexity Low_complexity 1 43 0 205 342 42 25 chr12 28568738 28568858 -115713631 + MIR SINE MIR 20 141 -67 510 280 164 0 chr12 28568901 28569108 -115713381 + MIR SINE MIR 8 248 -14 4542 94 3 11 chr12 28569117 28569758 -115712731 + L1PA11 LINE L1 5535 6170 -4 2383 74 0 0 chr12 28569768 28570065 -115712424 + AluY SINE Alu 1 297 -14 2396 76 3 7 chr12 28570634 28570938 -115711551 - AluSc SINE Alu -6 303 1 328 273 36 27 chr12 28571275 28571385 -115711104 - MER81 DNA DNA -2 112 2 278 192 0 0 chr12 28571478 28571530 -115710959 + MER94 DNA DNA 4 55 -79 350 215 65 11 chr12 28573035 28573128 -115709361 - MIR SINE MIR -24 238 141 339 326 0 11 chr12 28573195 28573287 -115709202 + MER81 DNA DNA 18 108 -6 243 357 0 0 chr12 28573295 28573365 -115709124 - MIR SINE MIR -191 71 2 600 296 154 22 chr12 28573905 28574223 -115708266 - L3 LINE CR1 -63 1514 1155 2234 112 3 0 chr12 28575022 28575317 -115707172 + AluSx SINE Alu 2 297 -15 2113 181 3 5 chr12 28575922 28576309 -115706180 - MLT1B LTR MaLR -4 386 1 282 292 200 8 chr12 28578085 28578215 -115704274 - MIR SINE MIR -57 205 51 1922 104 4 0 chr12 28578247 28578498 -115703991 + AluSx SINE Alu 1 252 -60 1551 201 87 14 chr12 28579947 28580316 -115702173 - MSTD LTR MaLR 0 396 1 304 267 17 52 chr12 28580552 28580668 -115701821 + MIR SINE MIR 145 256 -6 725 137 8 0 chr12 28581185 28581309 -115701180 - L1P LINE L1 -1369 4777 4653 22 99 0 0 chr12 28582069 28582140 -115700349 + AT_rich Low_complexity Low_complexity 1 71 0 510 17 0 0 chr12 28582371 28582430 -115700059 + (CA)n Simple_repeat Simple_repeat 2 60 0 5473 55 0 7 chr12 28582558 28583255 -115699234 - L1PA8 LINE L1 0 6172 5481 289 277 22 36 chr12 28583324 28583461 -115699028 + L1ME LINE L1 5529 5663 -458 8599 174 13 10 chr12 28583479 28585136 -115697353 - L1P LINE L1 -1126 5020 3360 5955 121 20 5 chr12 28585134 28586072 -115696417 + L1PA15 LINE L1 5217 6165 0 * 27 0 0 0 chr12 28586179 28586206 -115696283 + AT_rich Low_complexity Low_complexity 1 27 0 306 0 0 0 chr12 28586689 28586723 -115695766 + (CAA)n Simple_repeat Simple_repeat 1 34 0 190 378 157 16 chr12 28586953 28587138 -115695351 - L2 LINE L2 -192 3080 2870 2264 117 0 0 chr12 28587242 28587542 -115694947 + AluSq SINE Alu 1 300 -13 317 329 25 68 chr12 28587880 28588041 -115694448 + L3 LINE CR1 1383 1536 -41 438 269 108 7 chr12 28591420 28591592 -115690897 - MIR SINE MIR -59 203 23 21 0 0 0 chr12 28591858 28591879 -115690610 + AT_rich Low_complexity Low_complexity 1 21 0 1645 130 11 115 chr12 28592822 28593169 -115689320 - AluSx SINE Alu -1 311 1 482 219 48 9 chr12 28593520 28593625 -115688864 + L2 LINE L2 3205 3313 0 362 185 0 22 chr12 28593869 28593961 -115688528 + CT-rich Low_complexity Low_complexity 3 92 0 1110 161 5 21 chr12 28593997 28594183 -115688306 - AluJb SINE Alu -36 276 94 207 0 0 0 chr12 28594605 28594628 -115687861 + (CA)n Simple_repeat Simple_repeat 2 24 0 288 111 0 0 chr12 28594635 28594680 -115687809 + (GA)n Simple_repeat Simple_repeat 2 46 0 464 299 101 10 chr12 28594724 28594931 -115687558 + MIR SINE MIR 20 245 -17 2384 83 0 10 chr12 28595005 28595318 -115687171 - AluSg SINE Alu 0 310 1 303 217 61 26 chr12 28596276 28596391 -115686098 + LTR67 LTR ERVL 439 557 0 21 0 0 0 chr12 28596670 28596691 -115685798 + AT_rich Low_complexity Low_complexity 1 21 0 924 264 66 14 chr12 28597819 28598167 -115684322 - L1MC4 LINE L1 -124 7918 7553 246 214 107 0 chr12 28599131 28599187 -115683302 + MIR SINE MIR 93 154 -108 2329 83 3 10 chr12 28599517 28599818 -115682671 - AluSg SINE Alu -11 299 1 213 291 174 0 chr12 28602354 28602440 -115680049 - MIR3 SINE MIR -7 201 101 395 171 0 0 chr12 28602947 28603017 -115679472 - MER116 DNA Mariner -7 73 4 1384 304 30 24 chr12 28605993 28606500 -115675989 + L1MA8 LINE L1 1 510 -5771 14390 197 49 15 chr12 28606515 28609321 -115673168 + L1MA8 LINE L1 863 3573 -2922 1646 179 26 13 chr12 28609321 28609623 -115672866 - AluJb SINE Alu -6 306 1 14390 197 49 15 chr12 28609623 28612597 -115669892 + L1MA8 LINE L1 3573 6493 -2 23 68 0 0 chr12 28612598 28612642 -115669847 + AT_rich Low_complexity Low_complexity 1 44 0 362 271 245 0 chr12 28612814 28612965 -115669524 + MIR SINE MIR 2 189 -73 1678 178 15 109 chr12 28613759 28614164 -115668325 + MLT1E1 LTR MaLR 288 654 0 677 171 8 0 chr12 28614168 28614297 -115668192 - L1 LINE L1 -2604 3542 3413 7679 175 43 22 chr12 28614297 28615241 -115667248 + L1MB1 LINE L1 3506 4429 -1760 2217 105 0 19 chr12 28615241 28615554 -115666935 + AluY SINE Alu 1 307 -4 7679 175 43 22 chr12 28615554 28617215 -115665274 + L1MB1 LINE L1 4429 6172 -17 647 270 12 0 chr12 28617373 28617536 -115664953 - MLT2E LTR ERVL -22 606 442 1145 235 62 19 chr12 28617642 28618012 -115664477 - L1ME1 LINE L1 -8 6158 5773 22 70 0 0 chr12 28618015 28618058 -115664431 + AT_rich Low_complexity Low_complexity 1 43 0 482 184 0 0 chr12 28618135 28618233 -115664256 - L1M4 LINE L1 -1949 4197 4100 3305 290 25 19 chr12 28618291 28619311 -115663178 - ERVL LTR ERVL -2879 2885 1860 2014 181 83 5 chr12 28619409 28619807 -115662682 + MSTB1 LTR MaLR 4 432 0 695 219 115 89 chr12 28620121 28620504 -115661985 - MER34B LTR ERV1 -159 406 14 185 305 126 0 chr12 28620690 28620785 -115661704 + L2 LINE L2 3200 3306 -7 195 305 17 17 chr12 28621646 28621705 -115660784 + L2 LINE L2 3158 3216 -56 747 194 62 0 chr12 28621910 28622054 -115660435 + FRAM SINE Alu 11 163 -13 254 181 63 110 chr12 28622113 28622224 -115660265 - HAL1b LINE L1 -437 911 805 1726 124 109 29 chr12 28622224 28622571 -115659918 - THE1C LTR MaLR 0 375 1 254 181 63 110 chr12 28622571 28622586 -115659903 - HAL1b LINE L1 -543 805 791 410 315 11 14 chr12 28623496 28623657 -115658832 + MIR SINE MIR 19 178 -62 514 210 464 0 chr12 28623687 28623935 -115658554 + L2 LINE L2 2328 2690 -624 839 284 66 49 chr12 28624165 28624514 -115657975 + L2 LINE L2 2959 3313 0 223 246 51 68 chr12 28626720 28626838 -115655651 - MIR SINE MIR -56 206 91 22 0 0 0 chr12 28628466 28628488 -115654001 + AT_rich Low_complexity Low_complexity 1 22 0 212 336 61 23 chr12 28629792 28629923 -115652566 - MIR SINE MIR 0 262 127 788 282 60 0 chr12 28629984 28630200 -115652289 + MIR SINE MIR 2 230 -32 234 105 0 0 chr12 28630219 28630257 -115652232 + (TTA)n Simple_repeat Simple_repeat 1 38 0 200 224 15 0 chr12 28630778 28630845 -115651644 + (TA)n Simple_repeat Simple_repeat 2 69 0 798 283 128 8 chr12 28632142 28632524 -115649965 + MLT1J LTR MaLR 65 492 -19 260 300 0 0 chr12 28632665 28632725 -115649764 + L2 LINE L2 3200 3259 -54 834 136 14 4 chr12 28632866 28633150 -115649339 + CT-rich Low_complexity Low_complexity 1 287 0 502 201 187 22 chr12 28633150 28633289 -115649200 - FRAM SINE Alu -16 160 1 804 325 16 0 chr12 28633289 28633541 -115648948 - MIR SINE MIR -5 257 2 445 200 92 46 chr12 28634167 28634297 -115648192 + MER63A DNA MER1_type 75 210 0 2202 110 0 7 chr12 28634460 28634761 -115647728 - AluSx SINE Alu -13 299 1 204 67 0 0 chr12 28635466 28635496 -115646993 + (T)n Simple_repeat Simple_repeat 1 30 0 396 321 34 83 chr12 28637427 28637692 -115644797 + MIR SINE MIR 10 261 -1 2152 120 35 41 chr12 28638110 28638476 -115644013 - THE1B LTR MaLR 0 364 1 292 243 138 59 chr12 28640530 28640682 -115641807 + MER5B DNA MER1_type 1 164 -14 6957 35 0 4 chr12 28640743 28641576 -115640913 + L1PA3 LINE L1 5326 6155 0 255 336 116 6 chr12 28641638 28641791 -115640698 - MIR SINE MIR -40 168 38 2435 159 26 9 chr12 28641946 28642367 -115640122 - MSTA LTR MaLR 0 428 1 45 19 0 0 chr12 28642661 28642713 -115639776 + AT_rich Low_complexity Low_complexity 1 52 0 211 220 0 20 chr12 28644028 28644078 -115638411 - L2 LINE L2 0 3272 3224 637 222 38 70 chr12 28644379 28644564 -115637925 - MER91B DNA MER1_type -10 180 2 23 0 0 0 chr12 28645010 28645033 -115637456 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr12 28646123 28646163 -115636326 + AT_rich Low_complexity Low_complexity 1 40 0 5206 146 28 9 chr12 28646316 28647560 -115634929 + L1PB4 LINE L1 4885 6153 -3 570 322 45 66 chr12 28650155 28650534 -115631955 + HAL1b LINE L1 12 382 -966 1212 276 72 7 chr12 28650876 28651333 -115631156 + L1MC4a LINE L1 5382 5868 -1940 355 288 41 0 chr12 28651629 28651775 -115630714 + L1ME3 LINE L1 2262 2413 -3733 410 301 6 25 chr12 28651884 28652047 -115630442 + L1ME3 LINE L1 2644 2803 -3343 431 38 0 0 chr12 28652048 28652101 -115630388 - MADE1 DNA Mariner -17 63 11 413 57 0 0 chr12 28652095 28652148 -115630341 - MADE1 DNA Mariner -27 53 1 * 581 267 131 64 chr12 28652227 28652828 -115629661 + L1ME3 LINE L1 2921 3607 -2539 1721 99 5 0 chr12 28652828 28653049 -115629440 + AluSp SINE Alu 1 222 -91 581 267 131 64 chr12 28653049 28653345 -115629144 + L1ME3 LINE L1 3607 3881 -2265 833 288 49 98 chr12 28653381 28653971 -115628518 - L2 LINE L2 0 3313 2739 1689 174 11 0 chr12 28653971 28654258 -115628231 - AluJo SINE Alu -18 294 5 833 288 49 98 chr12 28654258 28654454 -115628035 - L2 LINE L2 -574 2739 2535 1717 240 60 31 chr12 28654468 28654948 -115627541 - MLT2B1 LTR ERVL 0 520 27 1186 290 87 27 chr12 28655035 28656719 -115625770 + L1ME3 LINE L1 4079 5932 -230 4699 132 22 8 chr12 28657015 28657923 -115624566 + L1MA1 LINE L1 5122 6039 -263 295 279 142 46 chr12 28658133 28658330 -115624159 + MARNA DNA Mariner 171 386 -200 180 0 0 0 chr12 28658330 28658350 -115624139 + (A)n Simple_repeat Simple_repeat 1 20 0 3676 148 34 14 chr12 28659226 28659362 -115623127 + L1MB3 LINE L1 5463 5595 -588 2490 57 0 3 chr12 28659362 28659662 -115622827 + AluY SINE Alu 1 299 -12 3676 148 34 14 chr12 28659662 28660228 -115622261 + L1MB3 LINE L1 5595 6179 -4 2278 106 137 8 chr12 28663274 28663653 -115618836 - MSTA LTR MaLR 0 428 1 3988 127 55 13 chr12 28665389 28666100 -115616389 - L1MC1 LINE L1 0 6333 5593 259 247 0 45 chr12 28666101 28666190 -115616299 - L1M4 LINE L1 -1834 4312 4228 536 345 42 71 chr12 28666190 28666526 -115615963 - L2 LINE L2 -28 3244 2919 751 275 170 31 chr12 28666561 28666943 -115615546 + LTR16A LTR ERVL 1 435 -15 1246 266 141 16 chr12 28666957 28667405 -115615084 + HERV16 LTR ERVL 2 505 -4491 1229 311 45 13 chr12 28667402 28667872 -115614617 + HERV16 LTR ERVL 1084 1568 -3428 * 689 255 27 27 chr12 28667943 28668111 -115614378 + HERV16 LTR ERVL 1719 1889 -3107 1422 143 124 70 chr12 28668111 28668467 -115614022 + THE1C LTR MaLR 1 375 0 689 255 27 27 chr12 28668467 28668486 -115614003 + HERV16 LTR ERVL 1888 1906 -3090 403 241 0 0 chr12 28668614 28668693 -115613796 + MER58B DNA MER1_type 261 339 -2 714 310 47 40 chr12 28668693 28668990 -115613499 + HERV16 LTR ERVL 2319 2617 -2379 1517 275 33 26 chr12 28669068 28669559 -115612930 + MLT1J LTR MaLR 18 511 0 187 250 36 80 chr12 28669575 28669687 -115612802 - L2 LINE L2 -919 2395 2289 534 113 0 0 chr12 28671100 28671180 -115611309 - AluSp/q SINE Alu -14 299 220 989 233 88 91 chr12 28671180 28671604 -115610885 + MLT1G3 LTR MaLR 138 555 0 772 308 47 44 chr12 28671609 28672226 -115610263 - L1M4 LINE L1 -2051 4095 3477 5186 153 20 34 chr12 28672542 28672866 -115609623 - MER54A LTR ERVL 0 901 574 2538 122 25 37 chr12 28672866 28673299 -115609190 - MSTA LTR MaLR 0 428 1 5186 153 20 34 chr12 28673299 28673888 -115608601 - MER54A LTR ERVL -327 574 1 2094 147 0 6 chr12 28673959 28674273 -115608216 - AluSx SINE Alu 0 312 1 2913 160 51 74 chr12 28674273 28675110 -115607379 - MER57B-int LTR ERV1 -3384 4153 3336 364 107 36 0 chr12 28675087 28675143 -115607346 - MER57B-int LTR ERV1 -3722 2224 2167 * 730 136 0 8 chr12 28675139 28675257 -115607232 - MER57B-int LTR ERV1 -3929 2017 1901 572 176 14 47 chr12 28675260 28675408 -115607081 - MER57B-int LTR ERV1 -5183 2354 2212 * 4699 148 17 16 chr12 28675392 28676751 -115605738 - MER57B-int LTR ERV1 -5061 885 1 2762 114 21 7 chr12 28676751 28677179 -115605310 - MER57B LTR ERV1 0 434 1 271 278 56 69 chr12 28677374 28677518 -115604971 - L2 LINE L2 -4 3309 3168 3039 192 82 2 chr12 28677519 28678107 -115604382 + ERVL-B1 LTR ERVL 559 1193 -4571 * 7487 160 60 14 chr12 28678105 28679431 -115603058 + ERVL-B1 LTR ERVL 4359 5745 -19 1676 238 46 54 chr12 28679432 28679954 -115602535 + MLT2B1 LTR ERVL 1 518 -2 356 243 56 0 chr12 28681497 28681601 -115600888 + L1ME LINE L1 5723 5819 -347 2970 217 103 13 chr12 28683013 28683239 -115599250 - L1ME1 LINE L1 -32 6203 5999 399 73 0 0 chr12 28683239 28683294 -115599195 + (TG)n Simple_repeat Simple_repeat 2 56 0 2970 217 103 13 chr12 28683294 28683970 -115598519 - L1ME1 LINE L1 -236 5999 5219 292 62 25 173 chr12 28683964 28684012 -115598477 - L1MB3 LINE L1 -2 6181 6148 * 2190 109 0 7 chr12 28684012 28684316 -115598173 - AluY SINE Alu -9 302 1 292 62 25 173 chr12 28684316 28684348 -115598141 - L1MB3 LINE L1 -35 6148 6113 1355 259 76 15 chr12 28684360 28684808 -115597681 - L1ME1 LINE L1 -3686 2529 2042 207 0 0 0 chr12 28684808 28684831 -115597658 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1355 259 76 15 chr12 28684831 28685036 -115597453 - L1ME1 LINE L1 -4173 2042 1851 542 304 19 5 chr12 28685040 28685247 -115597242 - L1ME1 LINE L1 -4578 1818 1609 213 277 0 0 chr12 28686628 28686675 -115595814 - L2 LINE L2 -2 3311 3265 955 325 92 43 chr12 28686846 28687685 -115594804 - L2 LINE L2 -237 3035 2142 765 162 95 62 chr12 28687685 28687810 -115594679 + AluJo SINE Alu 29 163 -149 2531 106 6 3 chr12 28687810 28688170 -115594319 + THE1B LTR MaLR 1 361 -3 765 162 95 62 chr12 28688170 28688223 -115594266 + AluJo SINE Alu 163 213 -99 573 74 42 0 chr12 28688259 28688354 -115594135 + GA-rich Low_complexity Low_complexity 1 99 0 278 323 122 44 chr12 28688428 28688747 -115593742 - L2 LINE L2 -1217 2097 1754 420 153 0 31 chr12 28688754 28688852 -115593637 + CT-rich Low_complexity Low_complexity 3 97 0 2382 96 0 3 chr12 28689247 28689560 -115592929 - AluSx SINE Alu 0 312 1 2458 224 29 80 chr12 28690298 28691028 -115591461 - LTR8 LTR ERV1 0 691 2 4248 174 46 43 chr12 28691552 28693233 -115589256 - L1MA9 LINE L1 -40 6272 4590 924 166 43 0 chr12 28693252 28693415 -115589074 - L1PB4 LINE L1 -13 6143 5974 306 197 0 0 chr12 28693417 28693478 -115589011 - L1MC4 LINE L1 -1346 6696 6636 4788 37 0 0 chr12 28693481 28694042 -115588447 - L1PA5 LINE L1 -14 6140 5580 3977 152 25 6 chr12 28694044 28695076 -115587413 - L1PB4 LINE L1 -174 5982 4934 216 310 161 29 chr12 28695855 28696029 -115586460 - L2 LINE L2 -564 2750 2554 23 0 0 0 chr12 28697255 28697278 -115585211 + AT_rich Low_complexity Low_complexity 1 23 0 1362 164 96 14 chr12 28697662 28698094 -115584395 + LTR54 LTR ERV1 3 497 -1 29 0 0 0 chr12 28699720 28699749 -115582740 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr12 28699756 28699784 -115582705 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 24 67 0 0 chr12 28699851 28699896 -115582593 + AT_rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr12 28699921 28699946 -115582543 + AT_rich Low_complexity Low_complexity 1 25 0 28 61 0 0 chr12 28700776 28700825 -115581664 + AT_rich Low_complexity Low_complexity 1 49 0 30 27 0 0 chr12 28701471 28701508 -115580981 + AT_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chr12 28702467 28702501 -115579988 + AT_rich Low_complexity Low_complexity 1 34 0 2364 42 3 7 chr12 28702941 28703228 -115579261 + AluY SINE Alu 1 286 -25 37 0 0 0 chr12 28703228 28703265 -115579224 + AT_rich Low_complexity Low_complexity 1 37 0 203 275 72 29 chr12 28703314 28703383 -115579106 - L2 LINE L2 0 3313 3242 571 233 54 83 chr12 28703496 28703736 -115578753 + L1ME3A LINE L1 5928 6160 -10 301 327 163 42 chr12 28703833 28704313 -115578176 + L2 LINE L2 1826 2363 -951 2279 104 0 16 chr12 28705368 28705685 -115576804 + AluSq SINE Alu 1 312 -1 260 339 81 5 chr12 28705933 28706119 -115576370 - L1ME LINE L1 -393 5728 5529 2072 132 0 0 chr12 28706137 28706425 -115576064 + AluSx SINE Alu 1 288 -24 225 0 0 0 chr12 28706428 28706453 -115576036 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 305 327 42 24 chr12 28706578 28706743 -115575746 - HAL1b LINE L1 -554 794 627 292 306 12 0 chr12 28706968 28707053 -115575436 - HAL1b LINE L1 -758 590 505 798 196 14 0 chr12 28707299 28707442 -115575047 + FRAM SINE Alu 11 155 -21 23 33 0 0 chr12 28708068 28708098 -115574391 + AT_rich Low_complexity Low_complexity 1 30 0 762 184 8 0 chr12 28708127 28708252 -115574237 + AluJo/FLAM SINE Alu 5 130 -172 1441 186 10 44 chr12 28708253 28708549 -115573940 + AluJo SINE Alu 1 286 -26 202 146 24 0 chr12 28708556 28708597 -115573892 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 21 71 0 0 chr12 28708940 28708982 -115573507 + AT_rich Low_complexity Low_complexity 1 42 0 400 256 8 45 chr12 28709646 28709779 -115572710 + L1M3 LINE L1 4527 4654 -1492 669 133 0 19 chr12 28709780 28709917 -115572572 + FRAM SINE Alu 58 176 0 3033 176 32 23 chr12 28709917 28710234 -115572255 + L1M3 LINE L1 4648 4961 -1219 1490 158 93 91 chr12 28710234 28710665 -115571824 + MSTB1 LTR MaLR 1 432 0 3033 176 32 23 chr12 28710665 28711200 -115571289 + L1M3 LINE L1 4961 5508 -672 231 286 91 0 chr12 28711430 28711507 -115570982 + MER91C DNA MER1_type 35 118 -22 21 0 0 0 chr12 28711779 28711800 -115570689 + AT_rich Low_complexity Low_complexity 1 21 0 1691 167 65 3 chr12 28711802 28712095 -115570394 + AluSx SINE Alu 1 311 -1 3723 185 101 61 chr12 28712295 28713211 -115569278 + Tigger3b DNA MER2_type 1 977 -2051 2143 122 0 3 chr12 28713211 28713505 -115568984 - AluSx SINE Alu -19 293 1 3723 185 101 61 chr12 28713505 28713771 -115568718 + Tigger3b DNA MER2_type 977 1231 0 303 223 68 10 chr12 28714788 28714891 -115567598 - L1ME4a LINE L1 -16 6105 5997 313 301 124 13 chr12 28715323 28715476 -115567013 + MIR SINE MIR 90 259 -3 30 27 0 0 chr12 28717180 28717217 -115565272 + AT_rich Low_complexity Low_complexity 1 37 0 1753 117 23 0 chr12 28718843 28719099 -115563390 - AluSg SINE Alu -4 306 45 998 171 6 0 chr12 28719346 28719504 -115562985 + FRAM SINE Alu 1 158 -18 202 262 0 95 chr12 28719505 28719589 -115562900 + L2 LINE L2 3194 3269 -3 212 0 36 0 chr12 28719649 28719677 -115562812 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 184 42 0 0 chr12 28721093 28721117 -115561372 + (TTA)n Simple_repeat Simple_repeat 2 180 0 333 167 0 0 chr12 28721117 28721165 -115561324 - AluJo SINE Alu -20 282 235 851 226 6 0 chr12 28721170 28721338 -115561151 - AluJo SINE Alu -143 169 1 692 137 59 65 chr12 28721338 28721486 -115561003 - L1MC2 LINE L1 -13 6331 6185 264 221 263 11 chr12 28721486 28721581 -115560908 + MER34 LTR ERV1 1 119 -423 1255 196 70 42 chr12 28721588 28722008 -115560481 + MER39 LTR ERV1 80 566 -19 499 206 0 56 chr12 28722658 28722765 -115559724 + FRAM SINE Alu 1 101 -75 242 54 0 27 chr12 28722782 28722819 -115559670 + (GAA)n Simple_repeat Simple_repeat 2 37 0 320 295 0 18 chr12 28723228 28723340 -115559149 + MIR SINE MIR 86 195 -67 275 357 140 0 chr12 28723386 28723529 -115558960 + MIR SINE MIR 36 198 -64 744 218 124 25 chr12 28723601 28723803 -115558686 - MIR SINE MIR -11 251 30 212 370 76 0 chr12 28724559 28724651 -115557838 + MIR SINE MIR 50 148 -114 360 237 5 106 chr12 28724721 28724919 -115557570 + MIR SINE MIR 5 179 -63 267 277 31 0 chr12 28724923 28724988 -115557501 - MIR SINE MIR -82 180 114 197 259 0 17 chr12 28725174 28725232 -115557257 + MIR3 SINE MIR 142 198 -10 487 259 138 52 chr12 28726492 28726724 -115555765 + MIR SINE MIR 11 262 0 625 249 94 11 chr12 28727069 28727250 -115555239 + MIR SINE MIR 67 262 0 381 296 64 24 chr12 28727265 28727390 -115555099 - MIR3 SINE MIR -64 144 15 885 290 39 24 chr12 28728442 28728697 -115553792 + MIR SINE MIR 4 262 0 248 319 44 26 chr12 28728796 28728909 -115553580 - L2 LINE L2 0 3313 3199 291 290 214 15 chr12 28729017 28729148 -115553341 - MIR SINE MIR -86 176 20 434 319 19 19 chr12 28729809 28729966 -115552523 + L2 LINE L2 2293 2449 -865 452 294 18 31 chr12 28730870 28731033 -115551456 + MIR SINE MIR 76 236 -26 317 277 84 44 chr12 28731212 28731461 -115551028 - HAL1 LINE L1 -10 2497 2239 405 0 0 0 chr12 28731462 28731507 -115550982 + (CA)n Simple_repeat Simple_repeat 2 46 0 483 254 52 75 chr12 28731536 28731646 -115550843 - HAL1 LINE L1 -349 2158 2054 1633 184 13 67 chr12 28731646 28732032 -115550457 - MLT1A1 LTR MaLR 0 365 1 483 254 52 75 chr12 28732032 28732134 -115550355 - HAL1 LINE L1 -453 2054 1951 331 288 120 0 chr12 28732142 28732267 -115550222 - HAL1 LINE L1 -2367 140 1 1675 187 44 6 chr12 28732750 28733093 -115549396 - MLT1A1 LTR MaLR 0 365 10 2211 110 7 0 chr12 28733342 28733633 -115548856 - AluSx SINE Alu -19 293 1 54 49 0 0 chr12 28734759 28734841 -115547648 + AT_rich Low_complexity Low_complexity 1 82 0 251 282 8 16 chr12 28735293 28735417 -115547072 + L1M4 LINE L1 5265 5387 -759 210 271 0 0 chr12 28736709 28736757 -115545732 + T-rich Low_complexity Low_complexity 1 48 0 258 233 17 26 chr12 28736769 28736885 -115545604 + T-rich Low_complexity Low_complexity 3 117 0 8477 103 50 5 chr12 28737021 28738126 -115544363 - MER57-int LTR ERV1 -1905 5632 4447 2290 83 0 21 chr12 28738126 28738437 -115544052 - AluY SINE Alu 0 305 1 8477 103 50 5 chr12 28738437 28738743 -115543746 - MER57-int LTR ERV1 -3090 4447 4156 180 0 0 0 chr12 28738765 28738785 -115543704 + (TTC)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr12 28738903 28738924 -115543565 + GC_rich Low_complexity Low_complexity 1 21 0 201 319 0 0 chr12 28738960 28739029 -115543460 + C-rich Low_complexity Low_complexity 2 70 0 4824 112 12 1 chr12 28739857 28740646 -115541843 + L1PA16 LINE L1 5217 6013 -153 291 349 0 14 chr12 28740655 28740801 -115541688 + CT-rich Low_complexity Low_complexity 2 145 0 630 191 24 0 chr12 28740981 28741107 -115541382 + L1PA16 LINE L1 6028 6156 -10 345 222 56 23 chr12 28741966 28742088 -115540401 - MLT1K LTR MaLR -5 610 489 1551 142 68 84 chr12 28742593 28742974 -115539515 + THE1C LTR MaLR 1 375 0 228 324 0 0 chr12 28743041 28743143 -115539346 + A-rich Low_complexity Low_complexity 1 102 0 2196 103 7 0 chr12 28743189 28743480 -115539009 + AluSp SINE Alu 1 293 -20 285 219 9 76 chr12 28745184 28745289 -115537200 + LTR52 LTR ERVL 12 109 -312 1123 253 30 10 chr12 28745317 28745621 -115536868 + LTR52 LTR ERVL 112 421 0 1998 175 31 0 chr12 28745660 28746014 -115536475 + MLT1A1 LTR MaLR 1 365 0 918 181 19 0 chr12 28746129 28746289 -115536200 - AluJb SINE Alu -14 298 136 216 352 107 67 chr12 28746328 28746581 -115535908 + L2 LINE L2 2553 2815 -499 236 368 48 72 chr12 28746709 28746959 -115535530 + L2 LINE L2 2946 3189 -83 1507 128 0 0 chr12 28747101 28747335 -115535154 + L1MB8 LINE L1 5511 5744 -434 1360 159 30 4 chr12 28747338 28747602 -115534887 + L1MB8 LINE L1 5847 6117 -61 288 249 109 61 chr12 28747756 28747921 -115534568 + MIR SINE MIR 90 262 0 198 300 12 62 chr12 28748076 28748156 -115534333 - L2 LINE L2 -9 3263 3188 430 326 0 23 chr12 28748553 28748685 -115533804 + L2 LINE L2 3182 3310 -3 206 286 0 16 chr12 28749079 28749142 -115533347 - L2 LINE L2 -3 3269 3208 332 319 113 53 chr12 28749385 28749871 -115532618 - L1M2 LINE L1 -5802 1047 533 2746 196 76 37 chr12 28751833 28752382 -115530107 - L1ME1 LINE L1 -4 6660 6134 2310 111 0 0 chr12 28752382 28752689 -115529800 + AluSc SINE Alu 1 307 -2 2746 196 76 37 chr12 28752689 28753304 -115529185 - L1ME1 LINE L1 -530 6134 5445 195 42 0 0 chr12 28753304 28753328 -115529161 + (TC)n Simple_repeat Simple_repeat 2 25 0 2746 196 76 37 chr12 28753328 28753388 -115529101 - L1ME1 LINE L1 -1219 5445 5389 2093 105 0 0 chr12 28753390 28753686 -115528803 - LTR12 LTR ERV1 0 714 419 4612 104 77 65 chr12 28753686 28754502 -115527987 - LTR12 LTR ERV1 0 826 1 1506 260 87 55 chr12 28754504 28754896 -115527593 - L1ME1 LINE L1 -1247 5397 5019 1743 173 7 0 chr12 28754896 28755180 -115527309 + AluJb SINE Alu 13 298 -14 1506 260 87 55 chr12 28755180 28755746 -115526743 - L1ME1 LINE L1 -1625 5019 4409 266 295 101 0 chr12 28755738 28755887 -115526602 - L1ME4a LINE L1 -3 6118 5955 * 182 238 63 16 chr12 28756294 28756357 -115526132 - MIR3 SINE MIR -6 202 137 379 336 78 5 chr12 28756497 28756714 -115525775 - MIR SINE MIR -29 233 1 23 54 0 0 chr12 28756741 28756778 -115525711 + AT_rich Low_complexity Low_complexity 1 37 0 6170 203 61 62 chr12 28757758 28757982 -115524507 - L1ME1 LINE L1 -3942 2704 2481 1721 164 38 7 chr12 28757982 28758274 -115524215 - AluJo SINE Alu -11 301 1 6170 203 61 62 chr12 28758274 28759325 -115523164 - L1ME1 LINE L1 -4165 2481 1430 6793 68 22 43 chr12 28759325 28761065 -115521424 - SVA Other Other -590 1386 71 243 0 0 0 chr12 28761065 28761092 -115521397 + (GGGAGA)n Simple_repeat Simple_repeat 1 27 0 6170 203 61 62 chr12 28761092 28762438 -115520051 - L1ME1 LINE L1 -5214 1432 2 2415 145 51 2 chr12 28764525 28764939 -115517550 - MER57B LTR ERV1 0 434 1 972 110 8 30 chr12 28764940 28765164 -115517325 - MER57B-int LTR ERV1 -1 7536 7279 669 123 23 31 chr12 28765164 28765294 -115517195 - LTR54B LTR ERV1 -367 131 3 21359 123 53 36 chr12 28765294 28767856 -115514633 - MER57B-int LTR ERV1 -389 7148 4631 2290 83 0 21 chr12 28767856 28768167 -115514322 - AluY SINE Alu 0 305 1 21359 123 53 36 chr12 28768167 28768496 -115513993 - MER57B-int LTR ERV1 -2906 4631 4309 1869 127 55 0 chr12 28768496 28768792 -115513697 - AluSq SINE Alu 0 311 1 21359 123 53 36 chr12 28768792 28770432 -115512057 - MER57B-int LTR ERV1 -3228 4309 1550 4445 135 15 11 chr12 28770415 28771270 -115511219 - MER57B-int LTR ERV1 -5087 859 1 * 2751 114 21 7 chr12 28771270 28771698 -115510791 - MER57B LTR ERV1 0 434 1 277 278 56 69 chr12 28771893 28772037 -115510452 - L2 LINE L2 -4 3309 3168 3028 192 82 2 chr12 28772038 28772626 -115509863 + ERVL-B1 LTR ERVL 559 1193 -4571 * 7500 160 60 14 chr12 28772624 28773950 -115508539 + ERVL-B1 LTR ERVL 4359 5745 -19 1674 238 46 54 chr12 28773951 28774473 -115508016 + MLT2B1 LTR ERVL 1 518 -2 367 243 56 0 chr12 28776015 28776119 -115506370 + L1ME LINE L1 5723 5819 -347 3016 217 103 13 chr12 28777531 28777757 -115504732 - L1ME1 LINE L1 -32 6203 5999 399 73 0 0 chr12 28777757 28777812 -115504677 + (TG)n Simple_repeat Simple_repeat 2 56 0 3016 217 103 13 chr12 28777812 28778488 -115504001 - L1ME1 LINE L1 -236 5999 5219 299 62 25 173 chr12 28778482 28778530 -115503959 - L1MB3 LINE L1 -2 6181 6148 * 2286 92 0 7 chr12 28778530 28778834 -115503655 - AluY SINE Alu -9 302 1 299 62 25 173 chr12 28778834 28778866 -115503623 - L1MB3 LINE L1 -35 6148 6113 1414 259 76 15 chr12 28778878 28779326 -115503163 - L1ME1 LINE L1 -3686 2529 2042 207 0 0 0 chr12 28779326 28779349 -115503140 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1414 259 76 15 chr12 28779349 28779554 -115502935 - L1ME1 LINE L1 -4173 2042 1851 3179 286 87 18 chr12 28779558 28781116 -115501373 - L1ME1 LINE L1 -4578 1818 153 219 88 0 0 chr12 28781351 28781385 -115501104 + (TGG)n Simple_repeat Simple_repeat 2 35 0 391 340 31 19 chr12 28783988 28784150 -115498339 - MIR3 SINE MIR -29 179 16 2147 100 0 20 chr12 28784519 28784818 -115497671 - AluSq SINE Alu -20 293 1 380 328 29 23 chr12 28784823 28784994 -115497495 + MLT1L LTR MaLR 46 217 -398 395 232 86 55 chr12 28785008 28785224 -115497265 + MLT1L LTR MaLR 345 605 0 2999 143 33 133 chr12 28785604 28786399 -115496090 - L1MC3 LINE L1 -9 7776 7062 299 350 137 6 chr12 28786904 28787087 -115495402 + MIR SINE MIR 56 262 0 208 386 68 11 chr12 28787426 28787514 -115494975 + L2 LINE L2 3128 3220 -52 467 310 130 5 chr12 28787556 28787772 -115494717 - L3 LINE CR1 -82 1495 1253 482 261 32 13 chr12 28787879 28788036 -115494453 - Charlie7 DNA MER1_type -5 2607 2448 432 312 304 11 chr12 28788356 28788715 -115493774 - L2 LINE L2 0 3313 2850 279 282 19 48 chr12 28788728 28788831 -115493658 - MLT1K LTR MaLR -290 298 199 1875 149 3 3 chr12 28789691 28789986 -115492503 - AluJb SINE Alu -17 295 1 231 204 0 37 chr12 28790907 28790961 -115491528 + LTR43 LTR ERV1 100 151 -451 1233 96 48 0 chr12 28791887 28792054 -115490435 + AluSg/x SINE Alu 128 302 -10 1009 218 31 60 chr12 28792140 28792457 -115490032 - L1ME2 LINE L1 -6 6158 5851 643 144 42 0 chr12 28792993 28793111 -115489378 - L1MB3 LINE L1 -31 6152 6030 461 217 57 0 chr12 28793935 28794041 -115488448 - MLT1G LTR MaLR -7 548 437 746 247 69 52 chr12 28794085 28794376 -115488113 - MLT1G LTR MaLR -292 298 3 24 32 0 0 chr12 28795432 28795463 -115487026 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr12 28795603 28795637 -115486852 + AT_rich Low_complexity Low_complexity 1 34 0 312 27 0 0 chr12 28796291 28796328 -115486161 + (CA)n Simple_repeat Simple_repeat 2 38 0 1958 197 64 37 chr12 28796343 28796830 -115485659 + MLT1D LTR MaLR 1 500 -5 515 276 103 76 chr12 28797185 28797898 -115484591 + L1MC4a LINE L1 5193 5826 -352 2119 124 3 3 chr12 28797899 28798197 -115484292 + AluSx SINE Alu 1 298 -14 238 364 68 0 chr12 28798465 28798583 -115483906 + L1ME LINE L1 5531 5656 -465 297 215 183 21 chr12 28799259 28799445 -115483044 - L1MCc LINE L1 -4887 1536 1321 2888 171 18 52 chr12 28799657 28800287 -115482202 - L1MD1 LINE L1 -314 5928 5321 427 226 0 0 chr12 28800291 28800375 -115482114 + L1M4 LINE L1 2676 2759 -3387 236 250 33 0 chr12 28800367 28800427 -115482062 - L1MD1 LINE L1 -2511 3635 3574 * 465 265 58 12 chr12 28800611 28800775 -115481714 - L1P4 LINE L1 -388 5773 5601 2191 112 3 6 chr12 28800777 28801089 -115481400 + AluSx SINE Alu 2 312 0 5138 153 20 34 chr12 28801160 28801749 -115480740 + MER54A LTR ERVL 1 574 -327 2503 122 25 37 chr12 28801749 28802182 -115480307 + MSTA LTR MaLR 1 428 0 5138 153 20 34 chr12 28802182 28802506 -115479983 + MER54A LTR ERVL 574 901 0 825 308 47 44 chr12 28802822 28803439 -115479050 + L1ME3A LINE L1 3477 4095 -2051 987 233 88 91 chr12 28803444 28803868 -115478621 - MLT1G3 LTR MaLR 0 530 138 589 88 0 0 chr12 28803868 28803948 -115478541 + AluSp/q SINE Alu 220 299 -14 609 280 156 26 chr12 28804372 28805247 -115477242 + L1ME3A LINE L1 4932 5945 -225 380 273 33 8 chr12 28806027 28806148 -115476341 - MIR3 SINE MIR -3 205 82 1425 320 138 34 chr12 28806191 28806260 -115476229 - L2 LINE L2 -468 2846 2786 2381 76 0 0 chr12 28806260 28806562 -115475927 + AluY SINE Alu 1 302 -9 1425 320 138 34 chr12 28806562 28806796 -115475693 - L2 LINE L2 -528 2786 2578 2174 134 3 18 chr12 28806796 28807138 -115475351 - MER1B DNA MER1_type 0 337 1 1425 320 138 34 chr12 28807138 28808315 -115474174 - L2 LINE L2 -736 2578 1211 257 295 9 48 chr12 28809770 28809875 -115472614 - L2 LINE L2 -3 3310 3210 324 0 0 0 chr12 28810015 28810051 -115472438 + (TG)n Simple_repeat Simple_repeat 2 37 0 3366 235 97 52 chr12 28810715 28811896 -115470593 - HAL1 LINE L1 -469 2038 770 877 245 43 12 chr12 28811896 28812149 -115470340 - MIR SINE MIR 0 262 2 3366 235 97 52 chr12 28812149 28812510 -115469979 - HAL1 LINE L1 -1737 770 427 23 0 0 0 chr12 28813606 28813629 -115468860 + AT_rich Low_complexity Low_complexity 1 23 0 2127 99 7 14 chr12 28813834 28814128 -115468361 - AluSq SINE Alu -12 301 10 552 146 0 0 chr12 28815181 28815277 -115467212 - L1PA13 LINE L1 -6 6157 6062 221 316 0 25 chr12 28816917 28816996 -115465493 + MIR SINE MIR 17 93 -115 21 0 0 0 chr12 28818158 28818179 -115464310 + AT_rich Low_complexity Low_complexity 1 21 0 37 52 0 0 chr12 28818895 28818953 -115463536 + AT_rich Low_complexity Low_complexity 1 58 0 209 330 113 10 chr12 28819112 28819209 -115463280 - L2 LINE L2 -2 3311 3205 330 316 14 36 chr12 28819683 28819822 -115462667 + L2 LINE L2 3177 3312 -1 209 308 236 25 chr12 28820144 28820660 -115461829 - L2 LINE L2 -825 2489 1865 207 114 0 0 chr12 28820887 28820922 -115461567 + (CA)n Simple_repeat Simple_repeat 1 35 0 496 63 0 38 chr12 28822294 28822373 -115460116 - L1MB2 LINE L1 -2 6169 6094 2153 141 35 1 chr12 28822380 28822748 -115459741 - L1MB3 LINE L1 -143 6040 5658 30 0 0 0 chr12 28823410 28823440 -115459049 + AT_rich Low_complexity Low_complexity 1 30 0 273 197 0 0 chr12 28823573 28823639 -115458850 + (TA)n Simple_repeat Simple_repeat 1 66 0 321 47 0 0 chr12 28823639 28823682 -115458807 + (TG)n Simple_repeat Simple_repeat 2 44 0 208 241 0 35 chr12 28823860 28823918 -115458571 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 206 343 71 20 chr12 28825366 28825465 -115457024 + MIR3 SINE MIR 90 193 -15 349 294 117 0 chr12 28826330 28826527 -115455962 - L1MC4a LINE L1 -1902 5906 5687 225 146 66 0 chr12 28826731 28826868 -115455621 + (TA)n Simple_repeat Simple_repeat 1 146 0 252 134 85 0 chr12 28826886 28826968 -115455521 + (TTAA)n Simple_repeat Simple_repeat 1 89 0 2035 119 0 3 chr12 28826977 28827263 -115455226 - AluSg SINE Alu -25 285 1 329 233 12 12 chr12 28827267 28827353 -115455136 + L1ME3A LINE L1 5782 5867 -303 294 274 80 74 chr12 28828271 28828446 -115454043 + L2 LINE L2 2486 2661 -653 36 70 0 0 chr12 28828916 28828987 -115453502 + AT_rich Low_complexity Low_complexity 1 71 0 189 336 178 9 chr12 28829628 28829735 -115452754 + L3b LINE CR1 1407 1531 -52 212 318 206 0 chr12 28829770 28829877 -115452612 - L2 LINE L2 -7 3265 3137 268 271 170 14 chr12 28830129 28830487 -115452002 - L1MEc LINE L1 -2928 3201 2788 188 153 41 31 chr12 28830735 28830833 -115451656 + (TA)n Simple_repeat Simple_repeat 1 99 0 328 298 87 80 chr12 28830859 28831171 -115451318 - L1MEc LINE L1 -4752 1558 1245 244 249 99 103 chr12 28831216 28831489 -115451000 - L1MEc LINE L1 -4910 1209 938 10682 40 0 0 chr12 28831741 28833809 -115448680 - L1PA4 LINE L1 -1 6154 4086 9597 36 0 1 chr12 28833809 28834993 -115447496 + L1PA4 LINE L1 2926 4110 -2036 216 204 20 0 chr12 28835096 28835145 -115447344 + (TATG)n Simple_repeat Simple_repeat 1 50 0 657 171 89 0 chr12 28836351 28836474 -115446015 + MER46A DNA MER2_type 2 135 -101 362 161 18 0 chr12 28836482 28836538 -115445951 + MER46A DNA MER2_type 180 236 0 228 402 31 0 chr12 28836883 28837010 -115445479 + L2 LINE L2 2919 3049 -223 356 344 0 16 chr12 28837535 28837660 -115444829 + L2 LINE L2 2847 2969 -303 528 257 86 7 chr12 28837673 28837813 -115444676 + MIR SINE MIR 40 190 -72 1489 233 7 0 chr12 28839597 28839897 -115442592 + AluJo SINE Alu 1 302 -10 1131 211 98 50 chr12 28840127 28840506 -115441983 - MLT2C1 LTR ERVL 0 397 1 2745 118 5 0 chr12 28841198 28841606 -115440883 - L1PB3 LINE L1 -186 5968 5559 * 3548 212 11 9 chr12 28841602 28842443 -115440046 - L1PB3 LINE L1 -989 5157 4316 1720 171 55 9 chr12 28842473 28842817 -115439672 - MER46B DNA MER2_type -1 235 1 2252 108 3 3 chr12 28843271 28843577 -115438912 + AluSp SINE Alu 1 306 -7 206 345 64 47 chr12 28843900 28844071 -115438418 + MIR3 SINE MIR 7 180 -28 235 325 154 5 chr12 28844793 28844966 -115437523 - MIR SINE MIR -50 212 20 16054 175 19 12 chr12 28845107 28848581 -115433908 - L1PA13 LINE L1 -3 6160 2660 2515 58 0 6 chr12 28848581 28848892 -115433597 - AluY SINE Alu -2 309 1 16054 175 19 12 chr12 28848892 28849543 -115432946 - L1PA13 LINE L1 -3503 2660 2015 9301 106 7 0 chr12 28849917 28851195 -115431294 - HSMAR1 DNA Mariner 0 1287 1 817 159 0 29 chr12 28852629 28852767 -115429722 - FRAM SINE Alu -16 160 27 1446 145 66 84 chr12 28853183 28853492 -115428997 + THE1C LTR MaLR 1 303 -72 2120 129 0 0 chr12 28853492 28853786 -115428703 - AluSq SINE Alu -19 294 1 1446 145 66 84 chr12 28853786 28853856 -115428633 + THE1C LTR MaLR 303 373 -2 906 185 165 53 chr12 28853883 28854240 -115428249 + LTR37A LTR ERV1 26 422 -4 33 0 0 0 chr12 28854419 28854452 -115428037 + AT_rich Low_complexity Low_complexity 1 33 0 211 125 42 21 chr12 28854926 28854974 -115427515 + T-rich Low_complexity Low_complexity 2 50 0 50 41 0 31 chr12 28855025 28855122 -115427367 + AT_rich Low_complexity Low_complexity 1 94 0 226 148 56 0 chr12 28855507 28855561 -115426928 + (TA)n Simple_repeat Simple_repeat 2 58 0 180 0 0 0 chr12 28857637 28857657 -115424832 + (CAA)n Simple_repeat Simple_repeat 2 21 0 538 298 74 4 chr12 28857698 28857956 -115424533 - L1ME3A LINE L1 -221 5949 5674 532 184 0 0 chr12 28858107 28858210 -115424279 - L1MC4 LINE L1 -22 8020 7918 957 213 94 63 chr12 28858241 28858655 -115423834 - L1MC4a LINE L1 -1440 6762 6336 277 179 62 131 chr12 28858651 28858796 -115423693 - L1MC4a LINE L1 -2420 5782 5648 * 1175 295 75 67 chr12 28858840 28860609 -115421880 - L1MC4a LINE L1 -859 5681 3899 22 56 0 0 chr12 28860632 28860668 -115421821 + AT_rich Low_complexity Low_complexity 1 36 0 382 280 159 35 chr12 28860800 28861089 -115421400 - L1MC4a LINE L1 -2865 3675 3351 545 324 24 19 chr12 28861237 28861450 -115421039 - MIR SINE MIR 0 262 49 380 347 163 18 chr12 28861577 28862197 -115420292 - L2 LINE L2 -865 2449 1740 262 250 26 35 chr12 28862228 28862344 -115420145 + CT-rich Low_complexity Low_complexity 2 116 0 571 231 238 16 chr12 28862578 28862776 -115419713 - MIR SINE MIR -41 221 1 2363 103 0 0 chr12 28862998 28863308 -115419181 + AluSg SINE Alu 1 310 0 221 265 24 24 chr12 28864083 28864166 -115418323 + L2 LINE L2 3205 3287 -26 1061 310 83 29 chr12 28866987 28867718 -115414771 + L2 LINE L2 2336 3174 -139 481 266 8 32 chr12 28867715 28867839 -115414650 + L2 LINE L2 2603 2723 -591 * 959 233 40 83 chr12 28868057 28868431 -115414058 + LTR37B LTR ERV1 16 373 -95 493 207 47 95 chr12 28868432 28868664 -115413825 + LTR37B LTR ERV1 244 464 -4 404 296 58 43 chr12 28868672 28868963 -115413526 + L2 LINE L2 2991 3272 0 3113 222 97 115 chr12 28869589 28870449 -115412040 - L1MC4a LINE L1 -5141 1399 440 395 258 83 8 chr12 28870449 28870581 -115411908 + LTR37B LTR ERV1 19 160 -308 3113 222 97 115 chr12 28870581 28870994 -115411495 - L1MC4a LINE L1 -6100 440 21 2380 120 34 14 chr12 28871541 28871898 -115410591 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr12 28873075 28873096 -115409393 + AT_rich Low_complexity Low_complexity 1 21 0 1936 143 7 3 chr12 28874073 28874366 -115408123 - AluSq SINE Alu -19 294 1 215 170 21 0 chr12 28875398 28875445 -115407044 + T-rich Low_complexity Low_complexity 1 48 0 225 0 0 0 chr12 28875458 28875483 -115407006 + (T)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr12 28876567 28876591 -115405898 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr12 28876934 28876960 -115405529 + AT_rich Low_complexity Low_complexity 1 26 0 1558 153 3 67 chr12 28877150 28877450 -115405039 + AluJo SINE Alu 10 290 -22 439 152 0 0 chr12 28878299 28878365 -115404124 - U4 snRNA snRNA -79 66 1 1568 151 0 16 chr12 28878383 28878635 -115403854 + MER2 DNA MER2_type 1 248 -97 810 202 30 39 chr12 28878632 28878835 -115403654 + MER2 DNA MER2_type 144 344 -1 * 468 303 136 17 chr12 28880047 28880334 -115402155 + L2 LINE L2 2992 3312 -1 1840 175 19 26 chr12 28880351 28880728 -115401761 + MLT1A2 LTR MaLR 1 374 0 202 260 10 29 chr12 28880774 28880878 -115401611 + (TA)n Simple_repeat Simple_repeat 1 102 0 465 261 92 24 chr12 28881639 28881867 -115400622 - L1ME LINE L1 -530 5591 5367 25 31 0 0 chr12 28881889 28881921 -115400568 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr12 28882064 28882093 -115400396 + AT_rich Low_complexity Low_complexity 1 29 0 227 263 81 0 chr12 28882137 28882236 -115400253 - L1ME LINE L1 -1088 5058 4952 290 386 21 0 chr12 28882616 28882761 -115399728 - L2 LINE L2 -235 3037 2890 205 359 100 36 chr12 28882851 28883132 -115399357 - L2 LINE L2 -560 2754 2456 333 351 199 19 chr12 28883348 28883559 -115398930 + L2 LINE L2 2554 2802 -512 * 511 242 45 15 chr12 28883558 28883690 -115398799 + MIR SINE MIR 117 252 -10 25 0 0 0 chr12 28883810 28883835 -115398654 + AT_rich Low_complexity Low_complexity 1 25 0 610 294 155 57 chr12 28884244 28884682 -115397807 - L2 LINE L2 0 3313 2833 23 0 0 0 chr12 28884770 28884793 -115397696 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr12 28885256 28885280 -115397209 + (TTTTTA)n Simple_repeat Simple_repeat 2 25 0 2253 16 0 0 chr12 28885305 28885562 -115396927 - L1PA3 LINE L1 -4 6151 5895 376 241 43 46 chr12 28885915 28886023 -115396466 - MER41E LTR ERV1 -205 430 323 2811 162 40 58 chr12 28886023 28886646 -115395843 + LTR9 LTR ERV1 1 612 0 376 241 43 46 chr12 28886646 28886781 -115395708 - MER41E LTR ERV1 -312 323 54 26 0 0 0 chr12 28888360 28888386 -115394103 + AT_rich Low_complexity Low_complexity 1 26 0 7074 52 9 0 chr12 28888523 28889584 -115392905 - L1PA6 LINE L1 -5 6149 5085 180 313 0 30 chr12 28891257 28891324 -115391165 + L3 LINE CR1 1095 1159 -418 1786 218 25 17 chr12 28891610 28892014 -115390475 + MER82 DNA MER2_type 130 536 -117 2285 106 0 0 chr12 28892015 28892317 -115390172 + AluY SINE Alu 1 302 -9 568 277 8 0 chr12 28892335 28892465 -115390024 + MER82 DNA MER2_type 522 652 -1 339 85 0 0 chr12 28892942 28892989 -115389500 + (TG)n Simple_repeat Simple_repeat 2 48 0 250 216 27 0 chr12 28893885 28893985 -115388504 + (TA)n Simple_repeat Simple_repeat 1 102 0 522 127 64 3 chr12 28894001 28894333 -115388156 + (TA)n Simple_repeat Simple_repeat 1 352 0 1365 203 41 0 chr12 28894333 28894604 -115387885 - AluJb SINE Alu -27 285 4 24 32 0 0 chr12 28894612 28894643 -115387846 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 28894842 28894863 -115387626 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr12 28895745 28895801 -115386688 + AT_rich Low_complexity Low_complexity 1 56 0 598 285 116 11 chr12 28896859 28897126 -115385363 - L2 LINE L2 -6 3307 3013 791 40 0 0 chr12 28897220 28897319 -115385170 - L1PA5 LINE L1 0 6154 6056 1564 264 152 39 chr12 28897341 28897730 -115384759 - L2 LINE L2 -354 2960 2616 2362 112 0 0 chr12 28897730 28898042 -115384447 - AluSx SINE Alu 0 312 1 1564 264 152 39 chr12 28898042 28898371 -115384118 - L2 LINE L2 -698 2616 2161 910 190 87 10 chr12 28898459 28898654 -115383835 - MER2 DNA MER2_type -134 211 2 518 275 107 0 chr12 28898690 28898839 -115383650 + MIR SINE MIR 25 189 -73 221 231 15 15 chr12 28898849 28898914 -115383575 + (TA)n Simple_repeat Simple_repeat 2 66 0 1952 199 83 7 chr12 28898918 28899375 -115383114 - Charlie1b DNA MER1_type 0 523 32 849 264 29 64 chr12 28899404 28899484 -115383005 - MLT1D LTR MaLR -205 300 219 3989 155 17 61 chr12 28899484 28900305 -115382184 - LTR1 LTR ERV1 0 785 1 849 264 29 64 chr12 28900305 28900535 -115381954 - MLT1D LTR MaLR -286 219 1 1304 251 202 26 chr12 28900616 28900804 -115381685 - L2 LINE L2 -1175 2139 1986 1083 245 88 57 chr12 28900804 28901294 -115381195 + MLT1D LTR MaLR 1 505 0 1304 251 202 26 chr12 28901294 28901807 -115380682 - L2 LINE L2 -1328 1986 1314 235 164 15 15 chr12 28902069 28902136 -115380353 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 406 229 178 0 chr12 28903521 28903639 -115378850 - MIR SINE MIR -6 256 118 21 57 0 0 chr12 28903922 28903957 -115378532 + AT_rich Low_complexity Low_complexity 1 35 0 198 224 0 0 chr12 28904134 28904183 -115378306 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 357 240 78 69 chr12 28904477 28904694 -115377795 - HAL1 LINE L1 -4 2503 2285 522 295 0 0 chr12 28904719 28904868 -115377621 - HAL1 LINE L1 -302 2205 2057 2317 209 64 13 chr12 28905478 28905948 -115376541 - MER21B LTR ERV1 -364 499 6 6316 166 23 16 chr12 28905953 28907468 -115375021 - MER21B-int LTR ERV1 0 4191 2608 1924 291 93 30 chr12 28907566 28907615 -115374874 - HAL1 LINE L1 -1333 1174 1130 1891 169 0 0 chr12 28907615 28907922 -115374567 - AluJb SINE Alu -4 308 2 1924 291 93 30 chr12 28907922 28908342 -115374147 - HAL1 LINE L1 -1377 1130 738 701 265 41 0 chr12 28908342 28908512 -115373977 + MER45A DNA AcHobo 1 177 -1 1924 291 93 30 chr12 28908512 28909053 -115373436 - HAL1 LINE L1 -1769 738 86 210 71 0 0 chr12 28909053 28909081 -115373408 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1924 291 93 30 chr12 28909081 28909162 -115373327 - HAL1 LINE L1 -2421 86 12 1211 226 81 42 chr12 28909479 28909912 -115372577 - MLT1C LTR MaLR -10 457 8 1434 201 71 86 chr12 28909928 28910336 -115372153 - MLT1C-int LTR MaLR -9 1362 961 567 261 30 0 chr12 28910725 28910859 -115371630 - MLT1C-int LTR MaLR -511 860 723 3972 161 34 7 chr12 28910860 28911563 -115370926 - Tigger1 DNA MER2_type 0 2418 1697 7142 153 43 7 chr12 28911588 28912763 -115369726 - Tigger1 DNA MER2_type -1124 1294 70 1229 110 6 0 chr12 28912763 28912945 -115369544 + L1PA13 LINE L1 5962 6144 -19 7142 153 43 7 chr12 28912945 28913008 -115369481 - Tigger1 DNA MER2_type -2348 70 11 892 267 75 48 chr12 28913017 28913433 -115369056 - MLT1C LTR MaLR -40 427 1 328 322 21 14 chr12 28913880 28914023 -115368466 + CT-rich Low_complexity Low_complexity 2 145 0 393 348 0 0 chr12 28916603 28916721 -115365768 + MIR3 SINE MIR 86 203 -5 286 217 0 17 chr12 28917015 28917075 -115365414 - MIR3 SINE MIR -25 183 125 22 0 0 0 chr12 28917082 28917104 -115365385 + AT_rich Low_complexity Low_complexity 1 22 0 424 265 142 33 chr12 28917546 28917757 -115364732 - L2 LINE L2 -142 3171 2938 2353 78 0 0 chr12 28917798 28918093 -115364396 - AluSg SINE Alu -15 295 1 291 283 50 0 chr12 28918410 28918509 -115363980 + MER103 DNA DNA 11 114 -52 781 297 81 31 chr12 28918601 28919019 -115363470 + Charlie7 DNA MER1_type 7 445 -2167 356 293 42 30 chr12 28919289 28919456 -115363033 - MLT1J1 LTR MaLR -115 331 163 808 283 40 65 chr12 28919463 28919968 -115362521 - L1M4 LINE L1 -2316 4641 4150 26 0 0 0 chr12 28920057 28920083 -115362406 + AT_rich Low_complexity Low_complexity 1 26 0 2070 37 0 0 chr12 28920083 28920329 -115362160 - L1PA3 LINE L1 -3 6152 5907 350 283 84 47 chr12 28920399 28920590 -115361899 - L1MEd LINE L1 -5018 1101 904 203 170 38 94 chr12 28920954 28921007 -115361482 - MER5A DNA MER1_type 0 189 140 31 0 0 0 chr12 28921870 28921901 -115360588 + AT_rich Low_complexity Low_complexity 1 31 0 234 287 96 7 chr12 28922183 28922319 -115360170 - L1MC/D LINE L1 -1899 5909 5762 24 0 0 0 chr12 28922355 28922379 -115360110 + AT_rich Low_complexity Low_complexity 1 24 0 2446 62 20 0 chr12 28922501 28922805 -115359684 + AluY SINE Alu 1 310 -1 2231 113 0 7 chr12 28923003 28923313 -115359176 + AluSx SINE Alu 1 308 -4 233 281 124 0 chr12 28924500 28924589 -115357900 - L2 LINE L2 0 3313 3214 4741 256 100 47 chr12 28924989 28926595 -115355894 + L1MDa LINE L1 17 1729 -4811 1660 225 24 34 chr12 28926595 28927013 -115355476 + MLT2D LTR ERVL 1 414 0 4741 256 100 47 chr12 28927013 28927190 -115355299 + L1MDa LINE L1 1729 1895 -4645 1494 227 58 45 chr12 28927196 28927572 -115354917 - L1M4 LINE L1 -3327 3630 3261 1287 156 168 34 chr12 28927572 28927719 -115354770 - THE1C LTR MaLR -4 371 245 303 28 0 0 chr12 28927719 28927755 -115354734 + (GA)n Simple_repeat Simple_repeat 1 36 0 1287 156 168 34 chr12 28927755 28927934 -115354555 - THE1C LTR MaLR -130 245 1 8898 147 11 35 chr12 28927934 28929550 -115352939 - THE1C-int LTR MaLR 0 1580 3 1897 154 46 30 chr12 28929552 28929921 -115352568 - THE1C LTR MaLR 0 375 1 1494 227 58 45 chr12 28929921 28930053 -115352436 - L1M4 LINE L1 -3696 3261 3107 1972 165 18 6 chr12 28930053 28930386 -115352103 + MER1B DNA MER1_type 1 337 0 1494 227 58 45 chr12 28930386 28930453 -115352036 - L1M4 LINE L1 -3850 3107 3042 451 319 43 0 chr12 28930606 28930747 -115351742 - MER8 DNA MER2_type -87 152 6 242 239 43 22 chr12 28930752 28930844 -115351645 - L1M4 LINE L1 -4572 2387 2294 * 5029 182 24 15 chr12 28930840 28931931 -115350558 - L1 LINE L1 -1096 5050 3950 994 272 80 21 chr12 28931974 28932543 -115349946 - L1M4 LINE L1 -4726 2233 1637 347 215 43 92 chr12 28932517 28932608 -115349881 - L1M4 LINE L1 -6694 165 84 * 2050 145 16 21 chr12 28932608 28932981 -115349508 + THE1C LTR MaLR 5 375 0 347 215 43 92 chr12 28932981 28933052 -115349437 - L1M4 LINE L1 -6775 84 11 361 269 107 37 chr12 28933936 28934178 -115348311 + MIR SINE MIR 3 261 -1 207 338 8 68 chr12 28934881 28935014 -115347475 - MER5B DNA MER1_type -3 175 51 21 0 0 0 chr12 28936017 28936038 -115346451 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 28936522 28936545 -115345944 + AT_rich Low_complexity Low_complexity 1 23 0 6913 50 5 29 chr12 28938043 28939235 -115343254 + L1PA6 LINE L1 4981 6153 -1 48 0 0 0 chr12 28941176 28941224 -115341265 + AT_rich Low_complexity Low_complexity 1 48 0 181 274 274 0 chr12 28943438 28943500 -115338989 + L2 LINE L2 3235 3313 0 338 290 53 15 chr12 28944263 28944394 -115338095 - L2 LINE L2 -1 3312 3177 2144 110 0 3 chr12 28945267 28945566 -115336923 - AluSg SINE Alu -12 298 1 5927 92 14 2 chr12 28946292 28947144 -115335345 - L1PB1 LINE L1 -1 6150 5289 2169 207 15 0 chr12 28947145 28947623 -115334866 + L1 LINE L1 4124 4608 -1538 1574 238 36 7 chr12 28947622 28948034 -115334455 + L1P LINE L1 4855 5278 -868 * 21 0 0 0 chr12 28948475 28948496 -115333993 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 28948716 28948744 -115333745 + AT_rich Low_complexity Low_complexity 1 28 0 264 122 0 0 chr12 28949812 28949853 -115332636 + (T)n Simple_repeat Simple_repeat 1 41 0 887 328 70 14 chr12 28951210 28951555 -115330934 - MLT1I LTR MaLR -45 364 1 22 56 0 0 chr12 28952258 28952294 -115330195 + AT_rich Low_complexity Low_complexity 1 36 0 738 268 106 0 chr12 28952760 28952995 -115329494 + L1 LINE L1 4274 4533 -1613 2269 80 13 0 chr12 28953092 28953391 -115329098 + AluY SINE Alu 9 311 0 203 286 0 0 chr12 28953553 28953602 -115328887 - MIR3 SINE MIR -17 191 143 195 129 0 0 chr12 28953611 28953642 -115328847 + (TC)n Simple_repeat Simple_repeat 1 31 0 637 289 90 14 chr12 28953665 28953876 -115328613 + MIR SINE MIR 5 231 -31 215 347 0 0 chr12 28953932 28953981 -115328508 - MIR SINE MIR -129 79 31 1362 238 52 48 chr12 28954119 28954519 -115327970 - MER21B LTR ERV1 -58 805 404 526 199 247 32 chr12 28954525 28954755 -115327734 + MER21B LTR ERV1 42 358 -505 558 298 128 90 chr12 28955218 28955544 -115326945 - L2 LINE L2 -528 2786 2474 414 69 0 0 chr12 28955544 28955602 -115326887 + (TG)n Simple_repeat Simple_repeat 1 58 0 558 298 128 90 chr12 28955602 28956324 -115326165 - L2 LINE L2 -840 2474 1698 189 216 176 0 chr12 28956880 28956931 -115325558 + L2 LINE L2 3191 3250 -63 225 158 0 0 chr12 28957026 28957064 -115325425 - MER3 DNA MER1_type -160 49 12 1864 259 71 17 chr12 28957066 28957908 -115324581 - L1ME1 LINE L1 -152 6294 5413 606 124 52 0 chr12 28957912 28958009 -115324480 - THE1C LTR MaLR -2 373 272 2374 93 84 0 chr12 28958011 28958355 -115324134 - THE1C LTR MaLR -2 373 1 10095 100 22 67 chr12 28958360 28959240 -115323249 - THE1C-int LTR MaLR -6 1574 801 207 0 0 0 chr12 28959240 28959263 -115323226 + (CCCCCA)n Simple_repeat Simple_repeat 4 26 0 10095 100 22 67 chr12 28959263 28960030 -115322459 - THE1C-int LTR MaLR -779 801 1 2541 99 14 3 chr12 28960031 28960386 -115322103 - THE1C LTR MaLR -1 374 16 1292 134 111 20 chr12 28960393 28960646 -115321843 - THE1C LTR MaLR -99 276 1 541 243 120 60 chr12 28960649 28960966 -115321523 - L1ME1 LINE L1 -1014 5412 5077 692 242 42 0 chr12 28960966 28961131 -115321358 - MER20 DNA MER1_type -1 218 47 7153 231 52 25 chr12 28961131 28962198 -115320291 - L1ME1 LINE L1 -1589 4837 3800 1478 190 32 69 chr12 28962198 28962577 -115319912 - MLT1A1 LTR MaLR 0 365 1 7153 231 52 25 chr12 28962577 28964444 -115318045 - L1ME1 LINE L1 -2626 3800 1823 1036 60 40 20 chr12 28964983 28965133 -115317356 - L1PA11 LINE L1 -3 6171 6019 242 161 49 111 chr12 28965140 28965221 -115317268 - L1ME1 LINE L1 -4596 1830 1755 * 332 241 0 35 chr12 28965218 28965305 -115317184 - L1ME LINE L1 -473 5762 5679 2846 215 44 83 chr12 28965339 28965794 -115316695 - L1ME LINE L1 -795 5420 4948 2226 157 44 7 chr12 28965794 28966207 -115316282 + MSTA LTR MaLR 1 428 0 2846 215 44 83 chr12 28966207 28966829 -115315660 - L1ME LINE L1 -1267 4948 4386 213 94 0 0 chr12 28966833 28966865 -115315624 + (TA)n Simple_repeat Simple_repeat 2 33 0 3894 65 0 2 chr12 28966866 28967533 -115314956 - L1PA8 LINE L1 0 6172 5312 2157 129 0 0 chr12 28967533 28967842 -115314647 - AluSx SINE Alu -3 309 1 854 229 101 35 chr12 28967842 28968209 -115314280 - L1ME LINE L1 -1836 4379 3989 2437 247 52 39 chr12 28968252 28969403 -115313086 - L1MEc LINE L1 -2786 3429 2275 2080 117 0 0 chr12 28969403 28969721 -115312768 - AluSx SINE Alu 0 318 1 2437 247 52 39 chr12 28969721 28969943 -115312546 - L1MEc LINE L1 -3940 2275 2057 717 228 0 20 chr12 28970531 28970680 -115311809 + Tigger3(Golem) DNA MER2_type 2 147 -2882 * 794 90 83 14 chr12 28970652 28970797 -115311692 + Tigger3(Golem) DNA MER2_type 2041 2195 -834 * 802 138 0 0 chr12 28970793 28970916 -115311573 - MSTB2 LTR MaLR -316 141 19 1586 157 0 0 chr12 28970921 28971163 -115311326 + Tigger3(Golem) DNA MER2_type 2797 3038 0 883 116 116 7 chr12 28971226 28971373 -115311116 + MER34B LTR ERV1 1 163 -402 642 130 0 0 chr12 28971390 28971490 -115310999 - LTR12 LTR ERV1 0 714 615 282 263 34 17 chr12 28971492 28971610 -115310879 - LTR30 LTR ERV1 -79 643 524 320 85 0 0 chr12 28971697 28971744 -115310745 - LTR12 LTR ERV1 -480 234 188 242 219 137 0 chr12 28971744 28971817 -115310672 - LTR30 LTR ERV1 -639 83 1 * 2343 166 34 7 chr12 28971817 28972217 -115310272 + MER34B LTR ERV1 155 565 0 263 186 29 14 chr12 28972970 28973040 -115309449 + MLT1J1 LTR MaLR 362 432 -14 22 35 0 0 chr12 28973386 28973415 -115309074 + AT_rich Low_complexity Low_complexity 1 29 0 2348 72 14 0 chr12 28974127 28974419 -115308070 - AluSp SINE Alu -17 296 1 225 0 0 0 chr12 28974564 28974589 -115307900 + (TG)n Simple_repeat Simple_repeat 2 26 0 1597 176 103 39 chr12 28975274 28975712 -115306777 - MER31B LTR ERV1 0 466 1 25 0 0 0 chr12 28976085 28976110 -115306379 + AT_rich Low_complexity Low_complexity 1 25 0 2135 232 43 76 chr12 28976143 28976443 -115306046 - L1ME1 LINE L1 -1 6165 5857 1110 166 16 43 chr12 28976443 28976520 -115305969 - L1MA9 LINE L1 0 6312 6234 189 0 0 0 chr12 28976520 28976541 -115305948 + (TA)n Simple_repeat Simple_repeat 2 22 0 1110 166 16 43 chr12 28976541 28976716 -115305773 - L1MA9 LINE L1 -78 6234 6067 2135 232 43 76 chr12 28976716 28977152 -115305337 - L1ME1 LINE L1 -309 5857 5453 1665 209 0 0 chr12 28978654 28978956 -115303533 - AluJb SINE Alu -10 302 1 189 274 137 41 chr12 28979378 28979451 -115303038 - L2 LINE L2 -29 3243 3164 321 347 27 7 chr12 28979805 28979952 -115302537 - L1MC/D LINE L1 -2047 6179 6030 2425 117 4 80 chr12 28980109 28980570 -115301919 - L1PA15 LINE L1 -9 6156 5731 698 184 0 151 chr12 28980570 28980798 -115301691 + MLT2C1 LTR ERVL 205 397 0 265 60 0 40 chr12 28981837 28981887 -115300602 + (TTG)n Simple_repeat Simple_repeat 2 49 0 586 316 208 36 chr12 28982254 28982840 -115299649 + L3 LINE CR1 457 1143 -434 1189 195 4 13 chr12 28982903 28983129 -115299360 - AluJo SINE Alu -88 224 1 296 309 119 10 chr12 28983239 28983433 -115299056 - L1MC/D LINE L1 -531 6049 5835 24 0 0 0 chr12 28983544 28983568 -115298921 + AT_rich Low_complexity Low_complexity 1 24 0 300 246 45 77 chr12 28983649 28983869 -115298620 - L1MC/D LINE L1 -989 5575 5363 2455 237 19 36 chr12 28983913 28984610 -115297879 + MER76 LTR ERV 1 685 -3 914 188 16 36 chr12 28984622 28984814 -115297675 + MER5A DNA MER1_type 1 188 -1 227 278 111 0 chr12 28984870 28984960 -115297529 - L1MC/D LINE L1 -1294 5270 5171 3375 210 80 164 chr12 28985003 28986733 -115295756 - L1MCb LINE L1 -4819 1745 1 2245 93 10 13 chr12 28987188 28987501 -115294988 + AluSp SINE Alu 1 312 -1 22 35 0 0 chr12 28988388 28988417 -115294072 + AT_rich Low_complexity Low_complexity 1 29 0 389 272 38 32 chr12 28988632 28988790 -115293699 - L1ME1 LINE L1 -8 6158 6000 732 290 138 28 chr12 28989905 28990519 -115291970 - L1M4 LINE L1 -3261 2885 2204 * 7994 226 67 26 chr12 28990517 28990984 -115291505 - L1MC1 LINE L1 -37 6576 6130 641 69 11 0 chr12 28990984 28991071 -115291418 - L1PA10 LINE L1 -5 6163 6076 7994 226 67 26 chr12 28991071 28991154 -115291335 - L1MC1 LINE L1 -483 6130 6052 1626 150 64 64 chr12 28991154 28991528 -115290961 + THE1C LTR MaLR 1 374 -1 7994 226 67 26 chr12 28991528 28995673 -115286816 - L1MC1 LINE L1 -561 6052 1680 442 98 0 0 chr12 28995853 28995914 -115286575 - Alu SINE Alu -20 292 232 28 29 0 0 chr12 28995990 28996025 -115286464 + AT_rich Low_complexity Low_complexity 1 35 0 533 313 139 20 chr12 28996388 28996890 -115285599 - Tigger8 DNA MER2_type -100 566 5 1147 206 25 108 chr12 28997049 28997447 -115285042 + MLT1A1 LTR MaLR 1 365 0 451 186 12 12 chr12 28997533 28997619 -115284870 + Tigger5 DNA MER2_type 3 88 -2235 477 188 0 0 chr12 28997653 28997733 -115284756 + Tigger5 DNA MER2_type 2244 2323 0 270 81 0 0 chr12 28998609 28998646 -115283843 + (T)n Simple_repeat Simple_repeat 1 37 0 1697 195 114 51 chr12 28999335 28999674 -115282815 + L1ME2 LINE L1 4985 5301 -863 2379 93 3 0 chr12 28999674 28999984 -115282505 + AluSx SINE Alu 1 311 -1 1697 195 114 51 chr12 28999984 29000489 -115282000 + L1ME2 LINE L1 5301 5887 -277 270 280 0 28 chr12 29000472 29000579 -115281910 - L1MC4 LINE L1 -1325 6717 6614 * 258 137 0 59 chr12 29000582 29000684 -115281805 + (TA)n Simple_repeat Simple_repeat 2 97 0 397 284 0 21 chr12 29000870 29001011 -115281478 + L1MC5 LINE L1 7769 7906 -55 189 0 0 0 chr12 29001740 29001761 -115280728 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 650 215 207 15 chr12 29002620 29002881 -115279608 - MER5C DNA MER1_type 0 324 14 2343 120 6 0 chr12 29003384 29003741 -115278748 + L1PA14 LINE L1 5794 6152 -9 329 335 101 10 chr12 29004316 29004525 -115277964 + HAL1 LINE L1 162 389 -2118 840 215 169 33 chr12 29004532 29004834 -115277655 - MLT1A1 LTR MaLR 0 365 23 430 340 81 12 chr12 29004912 29005159 -115277330 + HAL1 LINE L1 460 723 -1784 1182 171 0 10 chr12 29005462 29005667 -115276822 - AluJb SINE Alu -109 203 1 312 318 84 9 chr12 29005928 29006142 -115276347 + L1ME LINE L1 5544 5773 -348 22 35 0 0 chr12 29006214 29006243 -115276246 + AT_rich Low_complexity Low_complexity 1 29 0 616 148 10 0 chr12 29006472 29006573 -115275916 + AluJ/FLAM SINE Alu 1 102 -210 216 86 0 0 chr12 29006612 29006647 -115275842 + (CAGGG)n Simple_repeat Simple_repeat 3 37 0 1772 108 24 16 chr12 29007595 29007846 -115274643 + AluSg SINE Alu 1 253 -57 270 287 21 21 chr12 29008067 29008161 -115274328 - L2 LINE L2 -35 3237 3144 180 200 0 0 chr12 29008175 29008215 -115274274 + CT-rich Low_complexity Low_complexity 3 42 0 306 280 43 11 chr12 29008282 29008375 -115274114 - MIR SINE MIR -55 207 112 189 0 0 0 chr12 29009333 29009354 -115273135 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 397 284 0 21 chr12 29010083 29010224 -115272265 - L1MC5 LINE L1 -55 7906 7769 236 350 14 7 chr12 29010227 29010370 -115272119 - L1ME3A LINE L1 -7 6163 6020 258 137 0 59 chr12 29010410 29010512 -115271977 + (TA)n Simple_repeat Simple_repeat 2 97 0 270 280 0 28 chr12 29010515 29010622 -115271867 + L1MC4 LINE L1 6614 6717 -1325 * 688 197 140 75 chr12 29010605 29010968 -115271521 - L1ME3A LINE L1 -275 5887 5498 22 0 0 0 chr12 29011287 29011309 -115271180 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 29011309 29011332 -115271157 + AT_rich Low_complexity Low_complexity 1 23 0 546 253 34 7 chr12 29011872 29012018 -115270471 - L2 LINE L2 -6 3307 3158 2592 176 56 7 chr12 29012022 29012814 -115269675 + L1ME2 LINE L1 5021 5858 -326 320 209 23 12 chr12 29013426 29013512 -115268977 + L1MA9 LINE L1 6078 6164 -148 303 317 137 5 chr12 29013523 29013728 -115268761 + L1MDa LINE L1 1707 1938 -4602 351 159 0 0 chr12 29014129 29014192 -115268297 + MADE1 DNA Mariner 6 68 -12 439 270 40 20 chr12 29015023 29015175 -115267314 + MIR SINE MIR 87 241 -21 2468 199 114 16 chr12 29018326 29019089 -115263400 + Charlie1 DNA MER1_type 1923 2760 -1 29 78 0 0 chr12 29019625 29019689 -115262800 + AT_rich Low_complexity Low_complexity 1 64 0 2275 268 74 41 chr12 29020981 29021862 -115260627 - L1M3d LINE L1 -4978 913 4 897 265 15 27 chr12 29022612 29022872 -115259617 - MIR SINE MIR 0 262 6 354 309 101 24 chr12 29023019 29023187 -115259302 - L2 LINE L2 -16 3297 3117 535 270 167 9 chr12 29023234 29023492 -115258997 + L1ME2 LINE L1 5862 6160 -10 592 282 102 4 chr12 29023550 29023795 -115258694 - L2 LINE L2 -887 2427 2159 1810 118 0 33 chr12 29025315 29025586 -115256903 - AluSg SINE Alu 0 310 49 327 345 104 48 chr12 29025865 29026221 -115256268 + L2 LINE L2 2809 3184 -88 243 275 47 107 chr12 29026584 29026733 -115255756 + L3 LINE CR1 987 1126 -451 396 349 62 17 chr12 29027010 29027251 -115255238 + MLT1K LTR MaLR 334 585 -3 241 317 117 0 chr12 29027284 29027404 -115255085 + MIR SINE MIR 49 182 -80 266 230 150 10 chr12 29027488 29027588 -115254901 + L3 LINE CR1 1149 1262 -315 243 210 92 59 chr12 29027594 29027713 -115254776 + L1MC4 LINE L1 6614 6736 -1306 1749 174 56 3 chr12 29027750 29028072 -115254417 - MER7A DNA MER2_type -9 337 1 198 188 0 0 chr12 29028673 29028705 -115253784 + L2 LINE L2 3214 3245 -27 198 188 0 0 chr12 29029395 29029427 -115253062 + L2 LINE L2 3214 3245 -27 1652 258 126 14 chr12 29029575 29030091 -115252398 + MER119 DNA MER1_type 7 580 -3 220 384 40 46 chr12 29030216 29030367 -115252122 - L2 LINE L2 -23 3249 3100 246 263 15 83 chr12 29030447 29030580 -115251909 - L2 LINE L2 -209 3063 2940 17655 171 53 16 chr12 29031386 29038526 -115243963 + L1MA2 LINE L1 17 7426 -297 1080 274 118 25 chr12 29038527 29039276 -115243213 + HAL1 LINE L1 1153 2005 -502 951 280 77 31 chr12 29039278 29039317 -115243172 + MLT1H LTR MaLR 140 176 -373 2060 134 0 6 chr12 29039317 29039630 -115242859 - AluSx SINE Alu -1 311 1 951 280 77 31 chr12 29039630 29039915 -115242574 + MLT1H LTR MaLR 176 479 -70 7917 201 75 28 chr12 29039916 29041957 -115240532 - Cheshire DNA MER1_type 0 2420 285 520 228 106 0 chr12 29041957 29042080 -115240409 - Cheshire DNA MER1_type -2282 138 3 248 205 46 0 chr12 29042080 29042148 -115240341 + MLT1H LTR MaLR 494 587 -8 324 280 82 39 chr12 29042157 29042339 -115240150 + HAL1 LINE L1 2156 2345 -162 1275 44 0 0 chr12 29042364 29042524 -115239965 + L1P LINE L1 2752 2911 -3235 700 183 51 35 chr12 29043274 29043462 -115239027 + MSTD LTR MaLR 174 396 0 21156 46 0 1 chr12 29043743 29047205 -115235284 + L1PA3 LINE L1 2678 6152 -3 183 259 93 0 chr12 29047462 29047516 -115234973 - L2 LINE L2 0 3313 3255 504 237 106 66 chr12 29047599 29047797 -115234692 + L2 LINE L2 2465 2670 -644 751 22 0 0 chr12 29048503 29048593 -115233896 + 5S rRNA rRNA 1 90 -31 285 205 24 24 chr12 29049228 29049311 -115233178 - LTR67 LTR ERVL 0 557 475 707 283 35 15 chr12 29049680 29049878 -115232611 - MIR SINE MIR -4 258 57 666 198 23 35 chr12 29050396 29050568 -115231921 - MER20 DNA MER1_type -5 214 45 890 293 118 15 chr12 29050860 29051249 -115231240 - LTR16A LTR ERVL -6 444 16 1014 314 66 42 chr12 29051489 29052125 -115230364 - HERV16 LTR ERVL -503 5261 4611 795 262 81 8 chr12 29052151 29052399 -115230090 - HERV16 LTR ERVL -3862 1134 869 21 71 0 0 chr12 29052677 29052719 -115229770 + AT_rich Low_complexity Low_complexity 1 42 0 1607 242 107 31 chr12 29053314 29053349 -115229140 - MLT2B1 LTR ERVL -8 512 481 189 0 0 0 chr12 29053349 29053370 -115229119 + (TG)n Simple_repeat Simple_repeat 2 22 0 1607 242 107 31 chr12 29053370 29053810 -115228679 - MLT2B1 LTR ERVL -39 481 1 398 266 116 58 chr12 29053977 29054236 -115228253 + L2 LINE L2 2337 2610 -704 494 277 116 49 chr12 29054241 29054731 -115227758 + L2 LINE L2 2521 3311 -2 6929 62 1 7 chr12 29055336 29056786 -115225703 + L1PA5 LINE L1 4711 6154 0 369 158 248 40 chr12 29058425 29058526 -115223963 + MER20 DNA MER1_type 97 218 -1 687 259 81 0 chr12 29059144 29059329 -115223160 + MER46C DNA MER2_type 8 207 -131 322 307 89 39 chr12 29059618 29059875 -115222614 + L1ME4a LINE L1 5293 5562 -600 486 244 134 36 chr12 29059895 29060202 -115222287 + L1ME4a LINE L1 5607 5943 -178 38 0 0 0 chr12 29061991 29062029 -115220460 + AT_rich Low_complexity Low_complexity 1 38 0 210 210 49 12 chr12 29062047 29062128 -115220361 + (TA)n Simple_repeat Simple_repeat 2 85 0 2198 107 0 23 chr12 29062310 29062620 -115219869 - AluSx SINE Alu -9 303 1 2107 182 23 5 chr12 29063129 29063564 -115218925 - L1MB1 LINE L1 -1 6167 5725 401 194 231 22 chr12 29063998 29064132 -115218357 + MIR SINE MIR 97 258 -4 956 226 32 18 chr12 29066049 29066270 -115216219 + MER58A DNA MER1_type 1 224 0 283 306 0 27 chr12 29067052 29067163 -115215326 + MIR3 SINE MIR 98 205 -3 22 0 0 0 chr12 29068832 29068854 -115213635 + AT_rich Low_complexity Low_complexity 1 22 0 544 163 16 0 chr12 29069017 29069146 -115213343 + (TG)n Simple_repeat Simple_repeat 2 132 0 435 274 115 6 chr12 29070218 29070375 -115212114 - MIR SINE MIR -3 259 86 1784 330 93 16 chr12 29071079 29072079 -115210410 - ERVL LTR ERVL -2268 3496 2420 431 416 65 5 chr12 29072083 29072499 -115209990 - ERVL LTR ERVL -3540 2114 1674 492 242 74 42 chr12 29073207 29073397 -115209092 - LTR67 LTR ERVL -2 555 360 261 285 139 21 chr12 29073523 29073667 -115208822 - LTR67 LTR ERVL -356 201 41 322 284 10 29 chr12 29073999 29074101 -115208388 + L1MC4 LINE L1 6604 6703 -1339 301 250 0 62 chr12 29074015 29074111 -115208378 - L1MC4 LINE L1 -1339 6703 6614 * 204 125 0 0 chr12 29074702 29074734 -115207755 + (T)n Simple_repeat Simple_repeat 1 32 0 7305 36 1 0 chr12 29074757 29076227 -115206262 - L1PA4 LINE L1 -3 6152 4687 317 300 136 50 chr12 29077179 29077319 -115205170 + MIR SINE MIR 2 153 -109 1328 232 129 33 chr12 29077366 29077823 -115204666 + MLT1F1 LTR MaLR 67 567 0 21 0 0 0 chr12 29079436 29079457 -115203032 + AT_rich Low_complexity Low_complexity 1 21 0 1174 189 45 94 chr12 29079557 29079960 -115202529 - MLT1B LTR MaLR -7 383 1 1526 70 0 15 chr12 29080015 29080215 -115202274 - MER107 DNA MER1_type 0 197 1 1672 301 125 11 chr12 29080215 29081061 -115201428 + L2 LINE L2 2123 3066 -247 219 69 0 0 chr12 29081258 29081287 -115201202 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr12 29081574 29081595 -115200894 + AT_rich Low_complexity Low_complexity 1 21 0 344 336 0 0 chr12 29083043 29083162 -115199327 + L1ME LINE L1 4740 4858 -1288 286 264 22 84 chr12 29083217 29083395 -115199094 + L1ME LINE L1 5652 5749 -372 305 203 33 33 chr12 29083406 29083506 -115198983 + L1ME LINE L1 5510 5595 -526 512 252 8 16 chr12 29084083 29084206 -115198283 - L2 LINE L2 0 3313 3192 2051 146 0 3 chr12 29084926 29085221 -115197268 - AluSx SINE Alu -18 294 1 38 39 0 0 chr12 29086835 29086887 -115195602 + AT_rich Low_complexity Low_complexity 1 52 0 247 328 130 8 chr12 29087019 29087151 -115195338 + MIR SINE MIR 68 225 -37 29 47 0 0 chr12 29088559 29088602 -115193887 + AT_rich Low_complexity Low_complexity 1 43 0 250 266 211 23 chr12 29088602 29088730 -115193759 + L2 LINE L2 3162 3313 0 331 371 27 14 chr12 29089091 29089312 -115193177 - L2 LINE L2 -2891 423 200 865 277 137 17 chr12 29090414 29090873 -115191616 + L2 LINE L2 2199 2712 -602 738 224 88 5 chr12 29092195 29092387 -115190102 + MER3 DNA MER1_type 1 208 -1 274 320 141 0 chr12 29092998 29093126 -115189363 - MIR SINE MIR -32 230 85 558 251 153 6 chr12 29094001 29094184 -115188305 + MIR SINE MIR 34 243 -19 1770 108 100 0 chr12 29094308 29094567 -115187922 + AluSc SINE Alu 1 285 -24 207 0 0 0 chr12 29094765 29094788 -115187701 + (T)n Simple_repeat Simple_repeat 1 23 0 1983 115 70 16 chr12 29095816 29096130 -115186359 - THE1B LTR MaLR -33 331 1 248 299 0 13 chr12 29096975 29097052 -115185437 + MLT1I LTR MaLR 324 399 -10 207 340 124 0 chr12 29098053 29098206 -115184283 - MIR SINE MIR -56 206 35 2251 96 3 16 chr12 29098252 29098555 -115183934 + AluSq SINE Alu 1 299 -14 445 355 6 24 chr12 29098650 29098816 -115183673 + MER5A DNA MER1_type 1 163 -26 1604 169 40 3 chr12 29099104 29099429 -115183060 + L1MA7 LINE L1 5953 6289 -2 1241 141 19 0 chr12 29099436 29099649 -115182840 + L1MA3 LINE L1 6089 6305 0 218 178 0 100 chr12 29099658 29099748 -115182741 + A-rich Low_complexity Low_complexity 1 81 0 349 282 115 13 chr12 29100017 29100174 -115182315 - MIR3 SINE MIR -67 141 2 1664 154 103 0 chr12 29102179 29102451 -115180038 + AluJo SINE Alu 11 310 -2 2734 78 17 0 chr12 29102757 29103115 -115179374 - THE1B LTR MaLR 0 364 1 394 301 147 12 chr12 29105188 29105351 -115177138 + MIR3 SINE MIR 21 205 -3 477 263 44 31 chr12 29105649 29105809 -115176680 + Charlie8 DNA MER1_type 8 169 -2248 942 186 47 33 chr12 29105853 29106068 -115176421 - MER20 DNA MER1_type -1 218 1 620 238 17 52 chr12 29106102 29106274 -115176215 - MIR3 SINE MIR -30 178 13 3225 195 86 1 chr12 29107257 29107933 -115174556 - MER44D DNA MER2_type 0 605 1 1357 285 50 10 chr12 29108827 29109308 -115173181 + MLT1J LTR MaLR 11 510 -1 195 322 186 35 chr12 29110871 29111129 -115171360 - L2 LINE L2 -167 3105 2809 423 317 156 0 chr12 29111258 29111463 -115171026 - MIR SINE MIR -6 256 20 331 342 68 37 chr12 29112289 29112479 -115170010 + L3 LINE CR1 1370 1565 -12 364 283 25 45 chr12 29113998 29114196 -115168293 - L2 LINE L2 -200 3072 2879 607 262 18 6 chr12 29114414 29114582 -115167907 + MER45A DNA AcHobo 9 178 0 202 285 109 31 chr12 29114631 29114824 -115167665 - L2 LINE L2 -445 2869 2662 573 228 63 6 chr12 29115197 29115355 -115167134 + MER5A DNA MER1_type 1 167 -22 582 168 26 0 chr12 29116504 29116617 -115165872 + AluJb SINE Alu 189 304 -8 2048 167 57 19 chr12 29116617 29116983 -115165506 + MSTB LTR MaLR 47 426 0 210 287 171 31 chr12 29117919 29118048 -115164441 + L2 LINE L2 3167 3313 0 458 283 28 72 chr12 29119650 29119830 -115162659 + MIR SINE MIR 11 182 -80 301 234 28 75 chr12 29119809 29119916 -115162573 - MIR SINE MIR -14 248 147 * 533 242 93 19 chr12 29119990 29120151 -115162338 - MIR SINE MIR -52 210 38 29 0 0 0 chr12 29120621 29120650 -115161839 + AT_rich Low_complexity Low_complexity 1 29 0 312 360 32 21 chr12 29121579 29121765 -115160724 - HERV16 LTR ERVL -3582 2072 1885 490 242 74 42 chr12 29122662 29122852 -115159637 - LTR67 LTR ERVL -2 555 360 315 299 161 11 chr12 29122978 29123152 -115159337 - LTR67 LTR ERVL -356 201 2 321 284 10 29 chr12 29123466 29123568 -115158921 + L1MC4 LINE L1 6604 6703 -1339 229 208 104 52 chr12 29125053 29125130 -115157359 - MLT1I LTR MaLR -272 137 57 387 228 30 40 chr12 29125372 29125473 -115157016 - L2 LINE L2 0 3313 3214 * 554 252 14 48 chr12 29125470 29125617 -115156872 + L2 LINE L2 3172 3313 0 7048 48 6 0 chr12 29125981 29127078 -115155411 - L1PA7 LINE L1 -8 6146 5036 8448 34 1 0 chr12 29127757 29128780 -115153709 - L1PA3 LINE L1 -1928 4218 3195 9888 25 2 1 chr12 29128776 29130710 -115151779 + L1PA3 LINE L1 4218 6152 -3 503 237 106 66 chr12 29131104 29131302 -115151187 + L2 LINE L2 2465 2670 -644 764 22 0 0 chr12 29132008 29132098 -115150391 + 5S rRNA rRNA 1 90 -31 280 205 24 24 chr12 29132733 29132816 -115149673 - LTR67 LTR ERVL 0 557 475 703 283 35 15 chr12 29133185 29133383 -115149106 - MIR SINE MIR -4 258 57 667 198 23 35 chr12 29133901 29134073 -115148416 - MER20 DNA MER1_type -5 214 45 898 286 118 23 chr12 29134365 29134756 -115147733 - LTR16A LTR ERVL -6 444 17 1012 314 66 42 chr12 29134993 29135629 -115146860 - HERV16 LTR ERVL -503 5261 4611 797 262 77 4 chr12 29135655 29135903 -115146586 - HERV16 LTR ERVL -3862 1134 869 21 71 0 0 chr12 29136180 29136222 -115146267 + AT_rich Low_complexity Low_complexity 1 42 0 1611 242 107 31 chr12 29136817 29136852 -115145637 - MLT2B1 LTR ERVL -8 512 481 189 0 0 0 chr12 29136852 29136873 -115145616 + (TG)n Simple_repeat Simple_repeat 2 22 0 1611 242 107 31 chr12 29136873 29137313 -115145176 - MLT2B1 LTR ERVL -39 481 1 411 266 120 62 chr12 29137483 29137742 -115144747 + L2 LINE L2 2337 2610 -704 501 279 114 49 chr12 29137747 29138238 -115144251 + L2 LINE L2 2521 3311 -2 1082 220 14 9 chr12 29139102 29139325 -115143164 + MER58A DNA MER1_type 1 224 0 243 164 0 115 chr12 29139896 29139957 -115142532 + MIR SINE MIR 199 252 -10 1166 156 71 18 chr12 29139989 29140213 -115142276 + MER46A DNA MER2_type 1 236 0 4335 139 12 23 chr12 29140315 29141456 -115141033 - L1PA14 LINE L1 -243 5918 4800 1219 124 6 5 chr12 29141454 29141654 -115140835 + L1PA13 LINE L1 5966 6166 -8 * 528 245 7 35 chr12 29142406 29142549 -115139940 - L1ME3A LINE L1 -63 6107 5969 1543 191 55 60 chr12 29142859 29142937 -115139552 - MSTD LTR MaLR 0 396 319 1822 187 7 3 chr12 29142937 29143242 -115139247 + AluJo SINE Alu 1 306 -6 1543 191 55 60 chr12 29143242 29143561 -115138928 - MSTD LTR MaLR -77 319 1 493 126 0 0 chr12 29144201 29144288 -115138201 - L1PB1 LINE L1 0 6151 6065 5595 171 63 24 chr12 29144289 29145909 -115136580 - L1PB1 LINE L1 -36 6831 5092 243 0 0 0 chr12 29145909 29145936 -115136553 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 5595 171 63 24 chr12 29145936 29146176 -115136313 - L1PB1 LINE L1 -1775 5092 4863 28506 49 1 1 chr12 29146186 29150561 -115131928 - L1PA5 LINE L1 -2 6152 1777 1323 71 0 0 chr12 29150561 29150730 -115131759 + L1PA5 LINE L1 1634 1802 -4344 * 13532 174 81 8 chr12 29150726 29155266 -115127223 - L1PB1 LINE L1 -1985 4877 6 305 147 162 0 chr12 29155349 29155417 -115127072 - AluJ/FRAM SINE Alu 0 302 224 411 222 94 0 chr12 29155440 29155557 -115126932 + L1MC4a LINE L1 5721 5848 -1960 186 133 0 0 chr12 29155615 29155645 -115126844 + (TA)n Simple_repeat Simple_repeat 1 30 0 1312 260 118 42 chr12 29156633 29157186 -115125303 + MLT1G1 LTR MaLR 1 595 0 449 106 15 0 chr12 29157449 29157515 -115124974 + MSTD LTR MaLR 1 67 -329 553 151 53 22 chr12 29157540 29157690 -115124799 + MSTD LTR MaLR 208 396 0 927 302 69 58 chr12 29158357 29158837 -115123652 - L2 LINE L2 -8 3305 2821 272 264 22 0 chr12 29158842 29158933 -115123556 - L2 LINE L2 -1294 2020 1928 522 234 184 6 chr12 29159049 29159370 -115123119 + Charlie2 DNA MER1_type 2423 2800 -62 270 310 163 31 chr12 29160708 29160837 -115121652 + MIR SINE MIR 12 157 -105 21 0 0 0 chr12 29160927 29160948 -115121541 + AT_rich Low_complexity Low_complexity 1 21 0 2241 92 7 3 chr12 29162358 29162653 -115119836 + AluY SINE Alu 1 296 -15 772 302 22 9 chr12 29163081 29163313 -115119176 + MIR SINE MIR 3 237 -25 21 36 0 0 chr12 29163410 29163438 -115119051 + AT_rich Low_complexity Low_complexity 1 28 0 273 296 94 91 chr12 29164205 29164621 -115117868 - MLT1J LTR MaLR -94 417 1 562 177 26 0 chr12 29214866 29214979 -115067510 + AluJb SINE Alu 189 304 -8 1917 167 57 19 chr12 29214979 29215345 -115067144 + MSTB LTR MaLR 47 426 0 219 287 171 31 chr12 29216281 29216410 -115066079 + L2 LINE L2 3167 3313 0 452 282 28 77 chr12 29218012 29218193 -115064296 + MIR SINE MIR 11 182 -80 299 234 28 75 chr12 29218172 29218279 -115064210 - MIR SINE MIR -14 248 147 * 537 242 93 19 chr12 29218353 29218514 -115063975 - MIR SINE MIR -52 210 38 2049 110 21 21 chr12 29219373 29219664 -115062825 + AluSx SINE Alu 21 311 -1 485 274 116 7 chr12 29220627 29220773 -115061716 - MIR3 SINE MIR -17 191 30 354 353 133 0 chr12 29221212 29221362 -115061127 - L2 LINE L2 -4 3268 3099 549 274 63 31 chr12 29221428 29221651 -115060838 + MER20B DNA MER1_type 38 267 -516 1229 122 0 0 chr12 29221651 29221852 -115060637 - AluSg/x SINE Alu 0 327 127 2389 86 0 7 chr12 29221857 29222160 -115060329 - AluY SINE Alu -10 301 1 521 230 85 12 chr12 29222161 29222326 -115060163 + MER20B DNA MER1_type 258 434 -349 264 30 0 0 chr12 29223440 29223473 -115059016 + (TTTTTG)n Simple_repeat Simple_repeat 1 33 0 187 222 0 0 chr12 29224397 29224433 -115058056 - L2 LINE L2 -48 3224 3189 331 380 30 13 chr12 29225354 29225588 -115056901 - HAL1 LINE L1 -1162 1345 1108 10330 140 28 60 chr12 29225602 29225923 -115056566 - Tigger1 DNA MER2_type -310 2108 1778 2287 84 3 7 chr12 29225923 29226222 -115056267 - AluY SINE Alu -2 309 12 10330 140 28 60 chr12 29226222 29228079 -115054410 - Tigger1 DNA MER2_type -640 1778 1 403 319 51 7 chr12 29228112 29228250 -115054239 - MER5B DNA MER1_type -11 167 24 349 385 62 5 chr12 29228953 29229148 -115053341 - MIR SINE MIR -55 207 2 262 222 16 0 chr12 29230400 29230463 -115052026 + LTR33 LTR ERVL 10 73 -448 347 314 98 58 chr12 29230633 29230907 -115051582 + HAL1 LINE L1 1313 1597 -910 1803 141 25 0 chr12 29231812 29232112 -115050377 - AluSx SINE Alu 0 307 1 662 303 45 5 chr12 29233243 29233464 -115049025 + MIR SINE MIR 20 249 -13 1805 159 12 77 chr12 29233471 29233885 -115048604 - MLT1B LTR MaLR 0 390 4 278 283 87 51 chr12 29235078 29235216 -115047273 + MIR SINE MIR 3 145 -63 294 356 111 19 chr12 29235410 29235626 -115046863 - MIR SINE MIR -7 255 20 24 32 0 0 chr12 29235644 29235675 -115046814 + AT_rich Low_complexity Low_complexity 1 31 0 282 328 72 40 chr12 29236153 29236278 -115046211 + L2 LINE L2 3143 3271 -1 24 0 0 0 chr12 29237182 29237206 -115045283 + AT_rich Low_complexity Low_complexity 1 24 0 378 0 0 0 chr12 29237206 29237248 -115045241 + (TG)n Simple_repeat Simple_repeat 1 42 0 677 207 0 0 chr12 29237248 29237359 -115045130 - Tigger2 DNA MER2_type -16 2702 2592 1504 109 73 44 chr12 29237386 29237528 -115044961 + Tigger2 DNA MER2_type 2334 2470 -248 2336 117 0 0 chr12 29237528 29237836 -115044653 - AluSx SINE Alu -4 308 1 1504 109 73 44 chr12 29237836 29237968 -115044521 + Tigger2 DNA MER2_type 2470 2616 -102 5087 79 6 0 chr12 29238650 29239322 -115043167 - L1PA7 LINE L1 0 6154 5479 28 0 0 0 chr12 29240561 29240589 -115041900 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr12 29240994 29241014 -115041475 + (TATATG)n Simple_repeat Simple_repeat 5 24 0 191 284 64 64 chr12 29241636 29241745 -115040744 - L3 LINE CR1 -22 1555 1447 1691 251 55 31 chr12 29242085 29242635 -115039854 + Charlie1a DNA MER1_type 1 563 -892 2313 176 83 16 chr12 29242691 29243242 -115039247 + Charlie1a DNA MER1_type 868 1455 0 333 333 103 0 chr12 29245080 29245254 -115037235 + MIR SINE MIR 6 197 -65 2245 149 142 0 chr12 29245696 29246111 -115036378 + MER101 LTR ERV1 1 474 0 1427 218 13 13 chr12 29248783 29249086 -115033403 - AluJo SINE Alu -7 305 3 320 0 25 0 chr12 29249088 29249128 -115033361 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 240 59 0 0 chr12 29249135 29249169 -115033320 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 669 134 0 0 chr12 29249169 29249266 -115033223 - FLAM_C SINE Alu -26 117 21 2663 257 20 14 chr12 29250333 29251042 -115031447 + L1MEc LINE L1 32 744 -5652 3596 174 38 6 chr12 29251082 29251760 -115030729 + L1MC3 LINE L1 7065 7764 -21 1879 278 98 22 chr12 29251793 29252781 -115029708 + L1MEc LINE L1 810 1872 -4524 * 3020 241 61 18 chr12 29252777 29254108 -115028381 + L1ME1 LINE L1 4767 6139 -27 878 273 49 33 chr12 29254104 29254278 -115028211 + L1MEc LINE L1 1863 2033 -4363 * 1768 90 144 10 chr12 29254278 29254590 -115027899 + L1MA3 LINE L1 5952 6305 0 878 273 49 33 chr12 29254590 29254840 -115027649 + L1MEc LINE L1 2033 2294 -4102 303 330 46 29 chr12 29255958 29256131 -115026358 - MER20B DNA MER1_type -606 177 2 1813 182 30 43 chr12 29256141 29256536 -115025953 - MLT1B LTR MaLR 0 390 1 1082 246 3 42 chr12 29256577 29256862 -115025627 - MER93b LTR ERV1 -2 371 98 309 204 0 120 chr12 29257171 29257279 -115025210 + MLT1L LTR MaLR 193 287 -328 1092 208 93 28 chr12 29257549 29257908 -115024581 - L1MEc LINE L1 -2757 3458 3069 1357 224 29 45 chr12 29257908 29258288 -115024201 + MLT1A2 LTR MaLR 1 374 0 1092 208 93 28 chr12 29258288 29258327 -115024162 - L1MEc LINE L1 -3146 3069 3034 1393 231 148 7 chr12 29258330 29258872 -115023617 - L1MEc LINE L1 -3296 2919 2454 1797 176 14 43 chr12 29258872 29259084 -115023405 + L1PA15 LINE L1 5829 6029 -136 1845 174 0 29 chr12 29259084 29259400 -115023089 + AluSx SINE Alu 1 307 -5 1797 176 14 43 chr12 29259400 29259534 -115022955 + L1PA15 LINE L1 6029 6165 0 1393 231 148 7 chr12 29259534 29259626 -115022863 - L1MEc LINE L1 -3761 2454 2376 7770 20 0 0 chr12 29259626 29260653 -115021836 + L1PA3 LINE L1 5128 6154 -1 1393 231 148 7 chr12 29260653 29261042 -115021447 - L1MEc LINE L1 -3839 2376 1650 1208 203 33 61 chr12 29261068 29261398 -115021091 + MLT2D LTR ERVL 92 412 -2 415 237 29 36 chr12 29261438 29261577 -115020912 - L1MEc LINE L1 -6223 173 36 239 316 63 0 chr12 29262572 29262651 -115019838 + L2 LINE L2 3227 3310 -3 2386 80 0 10 chr12 29262892 29263205 -115019284 + AluY SINE Alu 1 310 -1 228 191 60 24 chr12 29263317 29263401 -115019088 - Charlie5 DNA MER1_type -160 2452 2366 885 358 22 25 chr12 29263454 29263898 -115018591 + L1M3c LINE L1 174 616 -5697 2162 231 114 33 chr12 29264107 29265219 -115017270 + L1M3c LINE L1 910 1872 -4512 680 156 127 12 chr12 29265331 29265504 -115016985 - Charlie5 DNA MER1_type -2419 193 1 26 0 0 0 chr12 29266554 29266580 -115015909 + AT_rich Low_complexity Low_complexity 1 26 0 291 285 31 23 chr12 29266618 29266748 -115015741 + L1ME4a LINE L1 5952 6082 -39 23 0 0 0 chr12 29266826 29266849 -115015640 + AT_rich Low_complexity Low_complexity 1 23 0 180 111 0 0 chr12 29267680 29267707 -115014782 + (TG)n Simple_repeat Simple_repeat 2 28 0 565 212 120 50 chr12 29268057 29268633 -115013856 + LTR48 LTR ERV1 5 542 0 688 305 156 35 chr12 29269256 29269968 -115012521 + HAL1 LINE L1 1127 1924 -583 200 195 0 0 chr12 29270113 29270154 -115012335 + GA-rich Low_complexity Low_complexity 4 44 0 510 242 78 7 chr12 29270832 29270902 -115011587 + MER69A DNA AcHobo 14 78 -2448 441 0 0 0 chr12 29270902 29270951 -115011538 + (CA)n Simple_repeat Simple_repeat 2 50 0 510 242 78 7 chr12 29270951 29271033 -115011456 + MER69A DNA AcHobo 78 177 0 37 52 0 0 chr12 29271936 29271994 -115010495 + AT_rich Low_complexity Low_complexity 1 58 0 322 302 21 0 chr12 29272231 29272327 -115010162 + MIR SINE MIR 49 146 -62 622 229 22 71 chr12 29272341 29272524 -115009965 + MER5A DNA MER1_type 4 177 -12 410 296 177 22 chr12 29272795 29273021 -115009468 + MIR SINE MIR 2 262 0 26 30 0 0 chr12 29273021 29273054 -115009435 + AT_rich Low_complexity Low_complexity 1 33 0 839 256 80 4 chr12 29273559 29273821 -115008668 + MER99 DNA DNA 546 827 -1 585 243 99 39 chr12 29274013 29274297 -115008192 - LTR43 LTR ERV1 -148 454 154 210 358 37 0 chr12 29275015 29275096 -115007393 - L2 LINE L2 -257 3015 2932 245 400 44 7 chr12 29275521 29275656 -115006833 - L2 LINE L2 -12 3260 3121 336 314 76 0 chr12 29276247 29276365 -115006124 - MIR3 SINE MIR -52 156 30 214 194 31 71 chr12 29277085 29277183 -115005306 + CT-rich Low_complexity Low_complexity 3 96 0 252 196 0 0 chr12 29277183 29277229 -115005260 - L2 LINE L2 -24 3248 3203 280 329 0 0 chr12 29277436 29277506 -115004983 + MIR SINE MIR 1 70 -192 6714 270 60 41 chr12 29277884 29278460 -115004029 - L1M1 LINE L1 -3899 2833 2269 2173 104 0 4 chr12 29278460 29278738 -115003751 - AluSc SINE Alu -32 277 1 6714 270 60 41 chr12 29278738 29281601 -115000888 - L1M1 LINE L1 -4463 2269 2 240 240 73 9 chr12 29282012 29282131 -115000358 - L1MC/D LINE L1 -485 5636 5573 329 286 232 14 chr12 29282558 29282778 -114999711 + L3 LINE CR1 1306 1573 -4 374 222 46 19 chr12 29282782 29282890 -114999599 - MIR SINE MIR -6 256 146 38 22 0 0 chr12 29283339 29283384 -114999105 + AT_rich Low_complexity Low_complexity 1 45 0 375 202 0 0 chr12 29284719 29284803 -114997686 + (TA)n Simple_repeat Simple_repeat 1 84 0 456 192 16 8 chr12 29285490 29285667 -114996822 - MLT1C LTR MaLR 0 467 241 363 295 44 9 chr12 29286588 29286815 -114995674 + L1M3 LINE L1 4430 4664 -1482 14908 176 21 24 chr12 29287072 29291102 -114991387 + L1MA3 LINE L1 2288 6305 0 22 0 0 0 chr12 29291102 29291124 -114991365 + AT_rich Low_complexity Low_complexity 1 22 0 226 261 76 22 chr12 29291460 29291552 -114990937 + L1M3 LINE L1 5349 5445 -723 285 254 127 34 chr12 29291651 29291856 -114990633 + L1ME LINE L1 5562 5785 -336 1097 259 87 19 chr12 29291861 29292231 -114990258 - MLT1I LTR MaLR -9 400 6 359 202 0 40 chr12 29292345 29292444 -114990045 + L1MB8 LINE L1 6084 6178 0 268 355 0 16 chr12 29292720 29292841 -114989648 + LTR16C LTR ERVL 363 481 -10 200 340 0 0 chr12 29292992 29293042 -114989447 + L2 LINE L2 3195 3244 -28 328 206 0 15 chr12 29293822 29293890 -114988599 + LTR67 LTR ERVL 450 516 -41 4585 100 7 7 chr12 29294407 29295094 -114987395 + L1PB1 LINE L1 5464 6150 -1 1915 224 54 9 chr12 29295408 29295850 -114986639 + MLT1C LTR MaLR 6 467 0 544 139 0 0 chr12 29296533 29296619 -114985870 + AluS SINE Alu 1 86 -227 225 94 0 0 chr12 29296911 29296943 -114985546 + (TAG)n Simple_repeat Simple_repeat 1 32 0 685 271 33 0 chr12 29296972 29297153 -114985336 - MIR SINE MIR -5 257 71 1384 140 3 8 chr12 29297176 29297492 -114984997 + THE1B LTR MaLR 1 364 0 207 325 138 69 chr12 29299186 29299346 -114983143 - MIR SINE MIR 0 262 92 772 240 80 22 chr12 29300260 29300485 -114982004 - MIR SINE MIR 0 262 25 188 193 18 35 chr12 29300560 29300617 -114981872 + MIR SINE MIR 99 154 -108 219 88 0 0 chr12 29301606 29301640 -114980849 + (CAGG)n Simple_repeat Simple_repeat 4 37 0 2143 114 13 0 chr12 29302825 29303132 -114979357 + AluSx SINE Alu 1 311 -1 473 319 55 6 chr12 29303506 29303688 -114978801 - MIR SINE MIR -52 210 20 2137 168 92 10 chr12 29304891 29305302 -114977187 - Tigger2 DNA MER2_type -1 2717 2273 406 145 14 14 chr12 29305292 29305361 -114977128 - Tigger2 DNA MER2_type -2649 69 1 * 2229 123 0 0 chr12 29305437 29305737 -114976752 + AluSx SINE Alu 1 300 -12 543 173 29 0 chr12 29305773 29305877 -114976612 - MLT1I LTR MaLR 0 409 303 22 0 0 0 chr12 29307091 29307113 -114975376 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr12 29307278 29307302 -114975187 + (TG)n Simple_repeat Simple_repeat 1 24 0 16500 36 0 0 chr12 29309480 29311574 -114970915 + L1PA5 LINE L1 3397 5490 -664 2390 31 0 3 chr12 29311574 29311857 -114970632 + L1PA5 LINE L1 5859 6146 -8 768 273 5 0 chr12 29312190 29312377 -114970112 - MER5A DNA MER1_type 0 189 2 796 259 19 13 chr12 29313299 29313615 -114968874 - L1MEc LINE L1 -1511 4704 4387 701 291 88 33 chr12 29313621 29314020 -114968469 + LTR52 LTR ERVL 1 421 0 746 267 76 15 chr12 29314022 29314352 -114968137 - L1MEc LINE L1 -1831 4384 4035 8796 181 23 38 chr12 29314353 29318339 -114964150 - L1P3 LINE L1 -1063 5398 10 1802 261 107 16 chr12 29318347 29319386 -114963103 - L1MEc LINE L1 -2358 3857 2627 1237 242 132 47 chr12 29319389 29319470 -114963019 - LTR40a LTR ERVL 0 519 446 1457 213 49 36 chr12 29319470 29319855 -114962634 - MLT1B LTR MaLR 0 390 1 1237 242 132 47 chr12 29319855 29320219 -114962270 - LTR40a LTR ERVL -73 446 36 600 268 0 7 chr12 29320239 29320381 -114962108 + MER45A DNA AcHobo 38 178 0 856 277 123 31 chr12 29320455 29321402 -114961087 - L1MEc LINE L1 -3594 2621 1627 1700 181 28 3 chr12 29321502 29321827 -114960662 - L1MA8 LINE L1 -183 7527 7195 501 65 83 24 chr12 29321833 29322001 -114960488 + (TA)n Simple_repeat Simple_repeat 1 178 0 612 63 66 38 chr12 29322027 29322537 -114959952 + (TA)n Simple_repeat Simple_repeat 1 524 0 776 145 7 14 chr12 29322563 29322701 -114959788 - L1MA8 LINE L1 -487 7223 7087 * 11509 190 19 14 chr12 29322699 29325316 -114957173 - L1MA8 LINE L1 -743 6822 4252 624 189 7 52 chr12 29325324 29325477 -114957012 - L1MA8 LINE L1 -4107 3458 3313 350 148 0 38 chr12 29325505 29325715 -114956774 + AluJb SINE Alu 4 294 -8 21 0 0 0 chr12 29325802 29325823 -114956666 + AT_rich Low_complexity Low_complexity 1 21 0 2290 114 0 0 chr12 29325867 29326174 -114956315 + AluSc SINE Alu 3 309 0 6215 89 11 0 chr12 29326221 29327787 -114954702 - L1PA8A LINE L1 -13 6118 4547 2460 18 0 0 chr12 29327790 29328069 -114954420 - L1P1 LINE L1 -376 5779 5501 25 31 0 0 chr12 29328084 29328116 -114954373 + AT_rich Low_complexity Low_complexity 1 32 0 849 282 82 31 chr12 29328125 29329172 -114953317 + L1M4 LINE L1 4333 5437 -741 * 1378 189 164 6 chr12 29329166 29329483 -114953006 - L1MCa LINE L1 -6040 386 20 459 312 87 14 chr12 29330286 29330562 -114951927 - L1ME LINE L1 -434 5728 5433 * 9592 209 67 28 chr12 29330561 29332827 -114949662 + L1MC1 LINE L1 386 2564 -4049 1619 189 33 7 chr12 29332827 29333129 -114949360 + AluSx SINE Alu 3 312 0 9592 209 67 28 chr12 29333129 29336670 -114945819 + L1MC1 LINE L1 2564 6442 -171 814 306 92 48 chr12 29336802 29337256 -114945233 + L2 LINE L2 918 1391 -1923 242 321 117 43 chr12 29337223 29337385 -114945104 + L2 LINE L2 3104 3277 -36 * 340 351 37 43 chr12 29337943 29338242 -114944247 + L1MEc LINE L1 975 1271 -5554 414 268 129 28 chr12 29338272 29338823 -114943666 + L1MEc LINE L1 1280 1943 -4882 2168 266 50 29 chr12 29338829 29339859 -114942630 + L1M2 LINE L1 1638 2689 -4160 20591 158 10 20 chr12 29339891 29344705 -114937784 + L1P3 LINE L1 6 4841 -1620 246 32 0 0 chr12 29344734 29344765 -114937724 + (TAA)n Simple_repeat Simple_repeat 3 33 0 29305 42 7 2 chr12 29344773 29349211 -114933278 - HAL1b LINE L1 -23 6132 316 819 284 95 20 chr12 29349588 29350148 -114932341 - L1M4 LINE L1 -2180 3966 3341 259 300 0 0 chr12 29351205 29351275 -114931214 + MIR3 SINE MIR 139 208 0 200 313 0 20 chr12 29351462 29351561 -114930928 + T-rich Low_complexity Low_complexity 6 102 0 193 328 0 0 chr12 29351764 29351825 -114930664 + MIR SINE MIR 144 204 -58 22 35 0 0 chr12 29352015 29352044 -114930445 + AT_rich Low_complexity Low_complexity 1 29 0 525 295 63 58 chr12 29353390 29353787 -114928702 - L1ME LINE L1 -339 5782 5384 371 354 139 11 chr12 29353945 29354392 -114928097 - L1ME LINE L1 -1071 5075 4572 316 285 89 25 chr12 29354542 29354700 -114927789 - MLT1J1 LTR MaLR -78 368 201 372 262 151 0 chr12 29354777 29354903 -114927586 - MLT1J2 LTR MaLR -284 166 22 385 355 144 10 chr12 29355868 29356369 -114926120 + L2 LINE L2 2222 2789 -525 3085 158 66 34 chr12 29356534 29356554 -114925935 - L1MC2 LINE L1 -1 6343 6325 2365 86 3 3 chr12 29356554 29356857 -114925632 + AluSp SINE Alu 4 306 -7 3085 158 66 34 chr12 29356857 29357091 -114925398 - L1MC2 LINE L1 -19 6325 6100 2035 134 45 25 chr12 29357091 29357448 -114925041 - THE1B LTR MaLR 0 364 1 3085 158 66 34 chr12 29357448 29357843 -114924646 - L1MC2 LINE L1 -244 6100 5672 2690 142 5 27 chr12 29357845 29358283 -114924206 - MSTA LTR MaLR 0 428 1 208 411 115 21 chr12 29358385 29358628 -114923861 - L2 LINE L2 -4 3268 3003 398 256 72 40 chr12 29358890 29359015 -114923474 + L2 LINE L2 3180 3308 -5 458 332 90 16 chr12 29359957 29360213 -114922276 + HAL1 LINE L1 901 1175 -1332 635 274 35 55 chr12 29360292 29360602 -114921887 + HAL1 LINE L1 1670 1973 -534 1087 246 91 27 chr12 29360642 29361019 -114921470 - MLT2E LTR ERVL -8 620 171 1848 171 125 18 chr12 29361019 29361404 -114921085 + MSTA LTR MaLR 1 426 -2 1087 246 91 27 chr12 29361404 29361587 -114920902 - MLT2E LTR ERVL -457 171 1 308 244 70 26 chr12 29361841 29361956 -114920533 + HAL1 LINE L1 2103 2222 -285 1916 109 11 4 chr12 29361960 29362225 -114920264 - AluSx SINE Alu -41 271 5 503 248 9 0 chr12 29363407 29363516 -114918973 - MER81 DNA DNA -4 110 1 621 0 83 0 chr12 29363967 29364076 -114918413 + (TA)n Simple_repeat Simple_repeat 1 118 0 494 286 30 12 chr12 29414159 29414327 -114868162 - L1MEc LINE L1 -4363 2033 1863 * 3020 241 61 18 chr12 29414323 29415654 -114866835 - L1ME1 LINE L1 -27 6139 4767 1879 278 98 22 chr12 29415650 29416638 -114865851 - L1MEc LINE L1 -4524 1872 810 * 3583 168 41 10 chr12 29416671 29417350 -114865139 - L1MC3 LINE L1 -21 7764 7065 2663 257 20 14 chr12 29417390 29418099 -114864390 - L1MEc LINE L1 -5652 744 32 669 134 0 0 chr12 29419166 29419263 -114863226 + FLAM_C SINE Alu 21 117 -26 240 59 0 0 chr12 29419263 29419297 -114863192 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 374 0 22 0 chr12 29419304 29419350 -114863139 + (CAAA)n Simple_repeat Simple_repeat 4 50 0 1423 220 13 13 chr12 29419350 29419655 -114862834 + AluJo SINE Alu 3 307 -5 2245 149 142 0 chr12 29422178 29422593 -114859896 - MER101 LTR ERV1 0 474 1 333 333 103 0 chr12 29423035 29423209 -114859280 - MIR SINE MIR -65 197 6 2313 176 83 16 chr12 29425046 29425597 -114856892 - Charlie1a DNA MER1_type 0 1455 868 1706 249 55 31 chr12 29425653 29426203 -114856286 - Charlie1a DNA MER1_type -892 563 1 191 284 64 64 chr12 29426543 29426652 -114855837 + L3 LINE CR1 1447 1555 -22 180 0 0 0 chr12 29427274 29427294 -114855195 + (CATATA)n Simple_repeat Simple_repeat 5 24 0 28 0 0 0 chr12 29427699 29427727 -114854762 + AT_rich Low_complexity Low_complexity 1 28 0 5087 79 6 0 chr12 29428966 29429638 -114852851 + L1PA7 LINE L1 5479 6154 0 1504 109 73 44 chr12 29430320 29430452 -114852037 - Tigger2 DNA MER2_type -102 2616 2489 2328 117 0 0 chr12 29430452 29430759 -114851730 + AluSx SINE Alu 1 307 -5 1504 109 73 44 chr12 29430759 29430901 -114851588 - Tigger2 DNA MER2_type -229 2489 2334 677 207 0 0 chr12 29430928 29431039 -114851450 + Tigger2 DNA MER2_type 2592 2702 -16 360 0 0 0 chr12 29431039 29431079 -114851410 + (CA)n Simple_repeat Simple_repeat 1 40 0 24 0 0 0 chr12 29431079 29431103 -114851386 + AT_rich Low_complexity Low_complexity 1 24 0 292 320 72 40 chr12 29432007 29432132 -114850357 - L2 LINE L2 -1 3271 3143 24 32 0 0 chr12 29432610 29432641 -114849848 + AT_rich Low_complexity Low_complexity 1 31 0 294 356 111 19 chr12 29432659 29432875 -114849614 + MIR SINE MIR 20 255 -7 278 283 87 51 chr12 29433069 29433207 -114849282 - MIR SINE MIR -63 145 3 1805 159 12 77 chr12 29434400 29434814 -114847675 + MLT1B LTR MaLR 4 390 0 662 303 45 5 chr12 29434821 29435042 -114847447 - MIR SINE MIR -13 249 20 1804 141 25 0 chr12 29436173 29436473 -114846016 + AluSx SINE Alu 1 307 0 312 70 0 0 chr12 29437439 29437482 -114845007 + (T)n Simple_repeat Simple_repeat 1 43 0 29 0 0 0 chr12 29437534 29437563 -114844926 + AT_rich Low_complexity Low_complexity 1 29 0 382 370 29 13 chr12 29437629 29437867 -114844622 - HAL1 LINE L1 -1158 1349 1108 11016 140 28 60 chr12 29437881 29438202 -114844287 - Tigger1 DNA MER2_type -310 2108 1778 2262 84 3 7 chr12 29438202 29438500 -114843989 - AluY SINE Alu -3 308 12 11016 140 28 60 chr12 29438500 29440357 -114842132 - Tigger1 DNA MER2_type -640 1778 1 411 319 51 7 chr12 29440390 29440528 -114841961 - MER5B DNA MER1_type -11 167 24 353 385 62 5 chr12 29441230 29441425 -114841064 - MIR SINE MIR -55 207 2 1195 270 87 37 chr12 29442667 29443148 -114839341 + LTR33 LTR ERVL 1 505 -16 950 148 31 0 chr12 29443230 29443392 -114839097 - L1MC3 LINE L1 -1340 6445 6279 25 0 0 0 chr12 29443430 29443455 -114839034 + AT_rich Low_complexity Low_complexity 1 25 0 2128 120 0 37 chr12 29444942 29445266 -114837223 + AluSx SINE Alu 1 312 0 275 365 93 0 chr12 29445284 29445391 -114837098 - L2 LINE L2 0 3272 3156 879 305 34 36 chr12 29445551 29445945 -114836544 - LTR16A1 LTR ERVL 0 481 83 201 328 52 26 chr12 29446071 29446187 -114836302 - L2 LINE L2 -222 3050 2932 414 200 19 0 chr12 29446261 29446366 -114836123 - L1MC5 LINE L1 -176 7785 7679 8754 142 20 15 chr12 29446366 29447236 -114835253 + Tigger1 DNA MER2_type 1 881 -1537 5712 97 49 5 chr12 29447236 29448200 -114834289 + L1PB1 LINE L1 5147 6150 -1 8754 142 20 15 chr12 29448200 29448760 -114833729 + Tigger1 DNA MER2_type 881 1437 -981 468 187 0 0 chr12 29448756 29448831 -114833658 + Tigger1 DNA MER2_type 2344 2418 0 * 230 121 69 35 chr12 29448878 29448936 -114833553 - L1MC5 LINE L1 -298 7663 7604 5445 50 1 0 chr12 29448938 29449602 -114832887 - L1PA7 LINE L1 -4 6150 5486 203 258 22 22 chr12 29449613 29449702 -114832787 + (TA)n Simple_repeat Simple_repeat 2 90 0 644 232 53 53 chr12 29449712 29450031 -114832458 - L1MC5 LINE L1 -385 7576 7258 * 846 269 105 56 chr12 29450010 29450583 -114831906 + L1MC4a LINE L1 5566 6166 -1642 23 0 0 0 chr12 29450596 29450619 -114831870 + AT_rich Low_complexity Low_complexity 1 23 0 478 260 100 50 chr12 29452834 29453034 -114829455 + MER63A DNA MER1_type 1 210 0 976 297 73 33 chr12 29453101 29453525 -114828964 + MLT1J2 LTR MaLR 9 449 -1 410 267 64 74 chr12 29453536 29453989 -114828500 - L1 LINE L1 -2653 3493 3052 264 185 0 0 chr12 29454110 29454164 -114828325 + (CA)n Simple_repeat Simple_repeat 2 55 0 22 35 0 0 chr12 29454588 29454617 -114827872 + AT_rich Low_complexity Low_complexity 1 29 0 558 245 180 55 chr12 29456017 29456217 -114826272 + MIR SINE MIR 28 252 -10 2950 70 8 0 chr12 29456539 29456911 -114825578 + THE1C LTR MaLR 1 375 0 2039 148 0 7 chr12 29457188 29457493 -114824996 - AluSx SINE Alu -9 303 1 24 32 0 0 chr12 29457691 29457722 -114824767 + AT_rich Low_complexity Low_complexity 1 31 0 310 328 41 51 chr12 29457761 29457956 -114824533 - HAL1b LINE L1 -1051 297 105 655 294 16 102 chr12 29457981 29458362 -114824127 + L2 LINE L2 295 642 -2672 703 221 37 5 chr12 29458378 29458568 -114823921 - L1M4c LINE L1 -4883 1501 1306 42 20 0 0 chr12 29458574 29458623 -114823866 + AT_rich Low_complexity Low_complexity 1 49 0 462 134 0 0 chr12 29458623 29458690 -114823799 - AluJb SINE Alu -194 118 52 1101 158 91 10 chr12 29458690 29458899 -114823590 + AluJb SINE Alu 64 289 -23 306 337 114 10 chr12 29459751 29459944 -114822545 - MIR SINE MIR -16 246 34 1797 159 7 26 chr12 29460628 29460936 -114821553 - AluJb SINE Alu -6 306 5 721 181 42 14 chr12 29461431 29461575 -114820914 - MER58A DNA MER1_type -3 221 74 1196 270 24 15 chr12 29461666 29462003 -114820486 + MER93a LTR ERV1 63 402 0 388 191 12 48 chr12 29462003 29462087 -114820402 - MER58A DNA MER1_type -26 81 1 261 195 0 0 chr12 29462259 29462300 -114820189 + MSTB LTR MaLR 261 301 -125 207 114 0 0 chr12 29464202 29464237 -114818252 + (CCA)n Simple_repeat Simple_repeat 3 37 0 252 0 0 0 chr12 29464238 29464266 -114818223 + (CA)n Simple_repeat Simple_repeat 2 29 0 7425 35 6 0 chr12 29464430 29465359 -114817130 - L1PA3 LINE L1 0 6155 5224 188 364 15 15 chr12 29465387 29465453 -114817036 - L2 LINE L2 -50 3222 3157 2445 134 29 26 chr12 29465486 29465905 -114816584 + MSTB LTR MaLR 2 421 -5 966 264 18 0 chr12 29465911 29466131 -114816358 + MER58A DNA MER1_type 1 224 0 1061 234 43 40 chr12 29466210 29466365 -114816124 + MLT1J LTR MaLR 3 156 -355 2246 120 27 33 chr12 29466365 29466731 -114815758 - THE1B LTR MaLR 0 364 1 10072 109 37 37 chr12 29466731 29468311 -114814178 - THE1B-int LTR MaLR 0 1580 1 2488 129 3 3 chr12 29468311 29468675 -114813814 - THE1B LTR MaLR 0 364 1 1061 234 43 40 chr12 29468675 29468820 -114813669 + MLT1J LTR MaLR 155 306 -205 309 186 0 0 chr12 29468857 29468927 -114813562 - L1M2 LINE L1 -832 5459 5390 8092 172 34 13 chr12 29468940 29470309 -114812180 - L1M2 LINE L1 -887 5259 3849 1948 143 26 54 chr12 29470309 29470695 -114811794 + THE1C LTR MaLR 1 375 0 8092 172 34 13 chr12 29470695 29470967 -114811522 - L1M2 LINE L1 -2297 3849 3584 1693 254 39 16 chr12 29471031 29471523 -114810966 - L1ME3A LINE L1 -52 6118 5616 1648 113 142 10 chr12 29471690 29472001 -114810488 + L1MA3 LINE L1 5954 6305 0 459 244 56 0 chr12 29472054 29472251 -114810238 + L1MEc LINE L1 2087 2294 -4102 319 337 34 29 chr12 29473369 29473544 -114808945 - MER20B DNA MER1_type -606 177 2 1813 182 30 43 chr12 29473554 29473949 -114808540 - MLT1B LTR MaLR 0 390 1 1082 246 3 42 chr12 29473990 29474275 -114808214 - MER93b LTR ERV1 -2 371 98 309 204 0 120 chr12 29474459 29474567 -114807922 + MLT1L LTR MaLR 193 287 -328 1092 208 93 28 chr12 29474837 29475196 -114807293 - L1MEc LINE L1 -2757 3458 3069 1357 224 29 45 chr12 29475196 29475576 -114806913 + MLT1A2 LTR MaLR 1 374 0 1092 208 93 28 chr12 29475576 29475615 -114806874 - L1MEc LINE L1 -3146 3069 3034 372 225 108 8 chr12 29475618 29475738 -114806751 - L1MEc LINE L1 -3296 2919 2788 1199 231 71 47 chr12 29475791 29476160 -114806329 - L1MEc LINE L1 -3522 2693 2334 1797 176 14 43 chr12 29476160 29476372 -114806117 + L1PA15 LINE L1 5829 6029 -136 1859 174 0 25 chr12 29476372 29476688 -114805801 + AluSx SINE Alu 1 308 -4 1797 176 14 43 chr12 29476688 29476822 -114805667 + L1PA15 LINE L1 6029 6165 0 1199 231 71 47 chr12 29476822 29476914 -114805575 - L1MEc LINE L1 -3881 2334 2246 7770 20 0 0 chr12 29476914 29477941 -114804548 + L1PA3 LINE L1 5128 6154 -1 1199 231 71 47 chr12 29477941 29478330 -114804159 - L1MEc LINE L1 -3969 2246 1650 1231 200 33 61 chr12 29478356 29478686 -114803803 + MLT2D LTR ERVL 92 412 -2 415 237 29 36 chr12 29478726 29478865 -114803624 - L1MEc LINE L1 -6223 173 36 239 316 63 0 chr12 29479860 29479939 -114802550 + L2 LINE L2 3227 3310 -3 474 233 134 78 chr12 29480064 29480180 -114802309 + MIR SINE MIR 16 124 -138 2420 76 0 10 chr12 29480180 29480494 -114801995 + AluY SINE Alu 1 311 0 474 233 134 78 chr12 29480494 29480609 -114801880 + MIR SINE MIR 124 260 -2 326 0 74 0 chr12 29481236 29481290 -114801199 + (TA)n Simple_repeat Simple_repeat 1 58 0 503 248 9 0 chr12 29481741 29481850 -114800639 + MER81 DNA DNA 1 110 -4 546 16 0 0 chr12 29482150 29482213 -114800276 + (TG)n Simple_repeat Simple_repeat 2 64 0 22 99 0 0 chr12 29482442 29482513 -114799976 + AT_rich Low_complexity Low_complexity 1 71 0 725 137 8 0 chr12 29483273 29483397 -114799092 + L1P LINE L1 4653 4777 -1369 304 267 17 52 chr12 29483914 29484030 -114798459 - MIR SINE MIR -6 256 145 1335 206 86 24 chr12 29484268 29484641 -114797848 + MSTD LTR MaLR 1 396 0 45 19 0 0 chr12 29485260 29485312 -114797177 + AT_rich Low_complexity Low_complexity 1 52 0 210 220 0 20 chr12 29486627 29486677 -114795812 - L2 LINE L2 0 3272 3224 636 222 38 70 chr12 29486978 29487163 -114795326 - MER91B DNA MER1_type -10 180 2 827 264 66 14 chr12 29487387 29487735 -114794754 - L1MC4 LINE L1 -124 7918 7553 241 239 119 34 chr12 29488626 29488752 -114793737 + MIR SINE MIR 22 154 -63 2299 90 3 10 chr12 29489083 29489384 -114793105 - AluSg SINE Alu -11 299 1 1068 152 6 0 chr12 29490624 29490789 -114791700 - AluJb SINE Alu -60 252 87 4156 61 0 0 chr12 29494794 29495366 -114787123 - L1P LINE L1 -4481 1665 1094 797 61 18 0 chr12 29495348 29495462 -114787027 - L1P LINE L1 -6030 116 1 * 1004 211 57 8 chr12 29495563 29495828 -114786661 - MER33 DNA MER1_type -46 278 1 315 96 0 0 chr12 29496201 29496253 -114786236 + (TC)n Simple_repeat Simple_repeat 1 52 0 194 250 0 15 chr12 29498882 29498950 -114783539 + CT-rich Low_complexity Low_complexity 4 70 0 216 143 20 20 chr12 29498984 29499033 -114783456 + CT-rich Low_complexity Low_complexity 1 49 0 303 290 10 20 chr12 29499047 29499147 -114783342 + CT-rich Low_complexity Low_complexity 2 100 0 2255 113 3 13 chr12 29499284 29499595 -114782894 - AluSx SINE Alu -3 309 2 412 302 149 36 chr12 29500394 29500669 -114781820 + L3 LINE CR1 1155 1460 -117 1447 179 0 82 chr12 29501084 29501274 -114781215 - AluJb SINE Alu 0 312 161 360 0 0 0 chr12 29501274 29501314 -114781175 + (TA)n Simple_repeat Simple_repeat 2 41 0 1447 179 0 82 chr12 29501314 29501463 -114781026 - AluJb SINE Alu -151 161 1 23 33 0 0 chr12 29502635 29502665 -114779824 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr12 29503186 29503216 -114779273 + AT_rich Low_complexity Low_complexity 1 30 0 435 269 108 7 chr12 29505185 29505357 -114777132 - MIR SINE MIR -59 203 23 21 0 0 0 chr12 29505621 29505642 -114776847 + AT_rich Low_complexity Low_complexity 1 21 0 253 331 95 34 chr12 29507176 29507324 -114775165 + MIR3 SINE MIR 2 158 -50 5397 40 1 4 chr12 29507590 29508281 -114774208 - L1PA3 LINE L1 -141 6014 5326 285 250 138 59 chr12 29508342 29508494 -114773995 - MER5B DNA MER1_type -14 164 1 5587 28 3 0 chr12 29509012 29509987 -114772502 - L1P1 LINE L1 -503 5652 4674 290 219 0 31 chr12 29510491 29510555 -114771934 + HsTC2 DNA Tc2 80 141 -1757 * 745 210 136 18 chr12 29510554 29510838 -114771651 + HsTC2 DNA Tc2 1282 1792 -106 2102 102 0 24 chr12 29510858 29511153 -114771336 + AluY SINE Alu 15 302 -9 2976 228 80 27 chr12 29511401 29512759 -114769730 + L1M1 LINE L1 3092 4536 -3029 386 321 34 83 chr12 29513335 29513600 -114768889 + MIR SINE MIR 10 261 -1 392 137 0 27 chr12 29514017 29514090 -114768399 - THE1C LTR MaLR 0 375 305 1186 133 0 0 chr12 29514215 29514380 -114768109 + AluSg/x SINE Alu 139 303 -9 243 146 0 0 chr12 29514917 29514958 -114767531 + (TA)n Simple_repeat Simple_repeat 1 41 0 232 49 73 0 chr12 29514986 29515027 -114767462 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 222 128 0 0 chr12 29515091 29515130 -114767359 + (TA)n Simple_repeat Simple_repeat 1 39 0 826 180 47 33 chr12 29515872 29516083 -114766406 - L1MA7 LINE L1 -212 6079 5866 501 265 74 6 chr12 29516098 29516260 -114766229 - MIR SINE MIR -39 223 51 22 56 0 0 chr12 29516774 29516810 -114765679 + AT_rich Low_complexity Low_complexity 1 36 0 725 134 12 134 chr12 29517391 29517562 -114764927 - AluSq/x SINE Alu -163 150 1 486 219 48 9 chr12 29517913 29518018 -114764471 + L2 LINE L2 3205 3313 0 407 174 0 22 chr12 29518261 29518353 -114764136 + CT-rich Low_complexity Low_complexity 3 92 0 1043 172 5 21 chr12 29518389 29518575 -114763914 - AluJb SINE Alu -36 276 94 186 191 0 48 chr12 29518723 29518765 -114763724 - L2 LINE L2 -2921 393 354 22 0 0 0 chr12 29519171 29519193 -114763296 + AT_rich Low_complexity Low_complexity 1 22 0 2225 110 0 7 chr12 29521630 29521931 -114760558 + AluSx SINE Alu 1 299 -13 407 208 85 39 chr12 29522093 29522223 -114760266 - MER63A DNA MER1_type 0 210 75 2342 165 70 6 chr12 29522697 29523194 -114759295 + L1PB4 LINE L1 5628 6156 0 200 253 0 84 chr12 29523400 29523483 -114759006 + MIR SINE MIR 36 111 -151 291 316 66 57 chr12 29524050 29524278 -114758211 - MLT1H LTR MaLR -199 350 121 642 270 70 11 chr12 29524367 29524737 -114757752 - L1M4 LINE L1 -743 5403 5012 38110 36 56 1 chr12 29524873 29530697 -114751792 + L1PA2 LINE L1 3 6153 -2 25 0 0 0 chr12 29531591 29531616 -114750873 + AT_rich Low_complexity Low_complexity 1 25 0 180 245 38 0 chr12 29531855 29531908 -114750581 + L3 LINE CR1 528 582 -995 685 133 46 67 chr12 29531959 29532154 -114750335 + L1MA7 LINE L1 6100 6290 -1 267 362 55 36 chr12 29532426 29532733 -114749756 - L2 LINE L2 -1230 2084 1772 1766 185 74 60 chr12 29533496 29533983 -114748506 - MLT1D LTR MaLR 0 505 12 2248 123 0 0 chr12 29534087 29534389 -114748100 - AluSx SINE Alu -10 302 1 417 66 0 0 chr12 29537852 29537913 -114744576 + (TG)n Simple_repeat Simple_repeat 2 62 0 291 233 55 110 chr12 29538434 29538506 -114743983 + MIR3 SINE MIR 61 123 -85 240 59 0 0 chr12 29538506 29538540 -114743949 + (TG)n Simple_repeat Simple_repeat 2 35 0 291 233 55 110 chr12 29538540 29538613 -114743876 + MIR3 SINE MIR 123 198 -10 615 290 28 16 chr12 29538685 29538940 -114743549 - MIR SINE MIR -3 259 2 317 341 73 55 chr12 29539915 29540079 -114742410 + L2 LINE L2 3091 3257 -15 386 282 8 16 chr12 29540384 29540508 -114741981 - MLT1H LTR MaLR -389 160 38 776 218 19 51 chr12 29542638 29542854 -114739635 - MER3 DNA MER1_type 0 209 1 427 254 8 74 chr12 29543735 29543857 -114738632 + MIR SINE MIR 2 115 -147 1118 181 25 137 chr12 29543925 29544093 -114738396 + MLT1B LTR MaLR 1 99 -291 2008 133 3 17 chr12 29544093 29544395 -114738094 + AluSg SINE Alu 1 298 -12 1118 181 25 137 chr12 29544395 29544629 -114737860 + MLT1B LTR MaLR 99 358 -32 3542 168 31 31 chr12 29544629 29545330 -114737159 + MER44D DNA MER2_type 1 701 -4 664 152 9 0 chr12 29545330 29545442 -114737047 - L1MC/D LINE L1 -560 5784 5672 463 201 71 24 chr12 29547386 29547555 -114734934 + MER96B DNA MER1_type? 2 178 -239 270 180 0 0 chr12 29547836 29547886 -114734603 + MER96B DNA MER1_type? 193 242 -175 1982 106 0 46 chr12 29548139 29548442 -114734047 + AluSg SINE Alu 1 289 -21 5287 146 12 20 chr12 29548771 29549696 -114732793 + MER49 LTR ERV1 5 921 -2 1251 233 136 17 chr12 29549965 29550385 -114732104 - MLT1E LTR MaLR -2 591 122 1119 38 11 48 chr12 29550411 29550597 -114731892 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1143 80 23 0 chr12 29550618 29550794 -114731695 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 995 182 0 0 chr12 29550810 29550986 -114731503 + MER46A DNA MER2_type 59 234 -2 27 29 0 0 chr12 29551212 29551246 -114731243 + AT_rich Low_complexity Low_complexity 1 34 0 707 244 15 4 chr12 29551282 29551447 -114731042 - MIR SINE MIR -31 231 67 2243 160 57 0 chr12 29551751 29552157 -114730332 - MSTB1 LTR MaLR 0 432 4 25 31 0 0 chr12 29552208 29552240 -114730249 + AT_rich Low_complexity Low_complexity 1 32 0 326 270 122 41 chr12 29552284 29552480 -114730009 + MIR SINE MIR 1 212 -50 5037 101 40 6 chr12 29552814 29553590 -114728899 + L1MA3 LINE L1 5504 6305 0 1297 178 0 13 chr12 29553761 29553997 -114728492 + MER46A DNA MER2_type 1 233 -3 24 0 0 0 chr12 29554925 29554949 -114727540 + AT_rich Low_complexity Low_complexity 1 24 0 1071 212 149 70 chr12 29555681 29555870 -114726619 + MLT2B1 LTR ERVL 1 174 -346 408 71 0 0 chr12 29555870 29555926 -114726563 + (CA)n Simple_repeat Simple_repeat 1 56 0 1071 212 149 70 chr12 29555926 29556172 -114726317 + MLT2B1 LTR ERVL 174 480 -40 536 106 11 0 chr12 29556172 29556266 -114726223 + (TA)n Simple_repeat Simple_repeat 2 96 0 1071 212 149 70 chr12 29556266 29556311 -114726178 + MLT2B1 LTR ERVL 480 520 0 575 242 96 32 chr12 29556395 29556676 -114725813 - L1ME4a LINE L1 -203 5918 5620 245 337 11 11 chr12 29556820 29556909 -114725580 + MER5B DNA MER1_type 89 177 -1 502 167 158 0 chr12 29557841 29557955 -114724534 + L1MC2 LINE L1 6202 6333 -11 186 309 31 52 chr12 29557966 29558063 -114724426 - MIR SINE MIR -85 177 83 333 47 0 0 chr12 29558843 29558886 -114723603 + (T)n Simple_repeat Simple_repeat 1 43 0 605 319 4 23 chr12 29560473 29560736 -114721753 + HAL1 LINE L1 1533 1790 -717 638 257 182 75 chr12 29561300 29561783 -114720706 - LTR67 LTR ERVL -4 553 19 384 22 0 0 chr12 29561785 29561830 -114720659 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 400 274 109 70 chr12 29561840 29562070 -114720419 + HAL1 LINE L1 2192 2430 -77 22 35 0 0 chr12 29562778 29562807 -114719682 + AT_rich Low_complexity Low_complexity 1 29 0 1879 157 3 20 chr12 29563258 29563564 -114718925 + AluJo SINE Alu 1 301 -11 303 266 147 18 chr12 29564400 29564509 -114717980 + MIR3 SINE MIR 85 207 -1 939 144 124 28 chr12 29564731 29564981 -114717508 + L1MB8 LINE L1 5708 5981 -197 207 0 0 0 chr12 29565201 29565224 -114717265 + (T)n Simple_repeat Simple_repeat 1 23 0 789 208 74 27 chr12 29565224 29565500 -114716989 - MER39 LTR ERV1 -16 642 304 342 310 76 6 chr12 29565539 29565697 -114716792 - MER34 LTR ERV1 -372 170 2 718 169 11 45 chr12 29565744 29565922 -114716567 + L1MB8 LINE L1 6007 6178 0 255 260 0 39 chr12 29566993 29567070 -114715419 + MER5B DNA MER1_type 105 178 0 1672 198 55 38 chr12 29567233 29567709 -114714780 - Charlie1b DNA MER1_type -7 516 33 188 281 24 49 chr12 29567756 29567838 -114714651 - MIR SINE MIR -71 137 58 27 73 0 0 chr12 29569479 29569534 -114712955 + AT_rich Low_complexity Low_complexity 1 55 0 861 215 23 6 chr12 29570924 29571101 -114711388 + MER5A DNA MER1_type 1 180 -9 889 93 7 22 chr12 29571487 29571626 -114710863 - AluY SINE Alu 0 311 175 498 152 0 0 chr12 29571955 29572034 -114710455 + LTR32 LTR ERVL 14 92 -379 657 188 6 56 chr12 29572088 29572248 -114710241 + LTR32 LTR ERVL 319 470 -1 285 254 110 51 chr12 29572360 29572478 -114710011 - MIR SINE MIR -4 258 134 1059 157 10 25 chr12 29573032 29573229 -114709260 - MER51D LTR ERV1 0 657 464 542 233 13 13 chr12 29573568 29573718 -114708771 - MER34-int LTR ERV1 0 7816 7667 1227 188 87 58 chr12 29573985 29574577 -114707912 - MER52-int LTR ERV1 -2506 4170 1772 281 111 42 69 chr12 29574662 29574734 -114707755 - MER52-int LTR ERV1 -6329 1791 1722 466 321 44 22 chr12 29575190 29575485 -114707004 - MER52-int LTR ERV1 -5051 1956 1544 317 146 0 0 chr12 29575611 29575659 -114706830 - MER52-int LTR ERV1 -7041 775 728 933 186 26 26 chr12 29576432 29576626 -114705863 - MER51D LTR ERV1 0 657 464 376 271 72 58 chr12 29577344 29577635 -114704854 + L1MC/D LINE L1 5351 5645 -2163 825 305 65 11 chr12 29578103 29578457 -114704032 - MLT1K LTR MaLR 0 588 216 2341 142 195 45 chr12 29578465 29578999 -114703490 + LTR18B LTR ERVL 1 614 0 1550 164 11 4 chr12 29579032 29579300 -114703189 + HERVL18 LTR ERVL 4 273 -5774 8430 165 5 7 chr12 29579337 29580791 -114701698 + HERVL18 LTR ERVL 939 2452 -3595 1103 235 4 6 chr12 29580790 29581072 -114701417 + HERVL18 LTR ERVL 2720 3076 -2971 * 3702 186 3 3 chr12 29581086 29581714 -114700775 + HERVL18 LTR ERVL 2952 3579 -2468 9720 159 22 1 chr12 29581716 29583336 -114699153 + HERVL18 LTR ERVL 4394 6047 0 2552 155 141 34 chr12 29583490 29584045 -114698444 + LTR18B LTR ERVL 1 614 0 2666 148 21 48 chr12 29584161 29584751 -114697738 - MER51A LTR ERV1 0 634 1 1761 168 37 0 chr12 29585815 29586113 -114696376 + AluJb SINE Alu 1 309 -3 201 121 0 0 chr12 29586611 29586644 -114695845 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 279 288 129 30 chr12 29586669 29586801 -114695688 + MIR SINE MIR 84 228 -34 610 154 31 154 chr12 29586990 29587077 -114695412 - MER3 DNA MER1_type -9 200 104 647 216 0 0 chr12 29587077 29587202 -114695287 + FLAM_C SINE Alu 2 126 -7 610 154 31 154 chr12 29587202 29587341 -114695148 - MER3 DNA MER1_type -105 104 2 24 0 0 0 chr12 29588339 29588363 -114694126 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr12 29588662 29588691 -114693798 + AT_rich Low_complexity Low_complexity 1 29 0 2544 186 67 35 chr12 29590183 29590221 -114692268 - MLT2B3 LTR ERVL 0 554 519 677 53 11 0 chr12 29590221 29590315 -114692174 + (TAGA)n Simple_repeat Simple_repeat 2 96 0 2544 186 67 35 chr12 29590315 29590813 -114691676 - MLT2B3 LTR ERVL -35 519 1 328 294 201 22 chr12 29591751 29591935 -114690554 + MIR SINE MIR 46 262 0 1801 215 46 63 chr12 29592004 29592100 -114690389 - LTR40a LTR ERVL -3 516 420 2397 88 7 0 chr12 29592100 29592408 -114690081 + AluY SINE Alu 1 310 -1 1801 215 46 63 chr12 29592408 29592836 -114689653 - LTR40a LTR ERVL -99 420 1 1797 288 80 54 chr12 29592883 29592903 -114689586 + L1MEc LINE L1 45 63 -6333 523 55 96 0 chr12 29592903 29592976 -114689513 - MADE1 DNA Mariner 0 80 1 1797 288 80 54 chr12 29592976 29594245 -114688244 + L1MEc LINE L1 63 1367 -5029 417 301 49 21 chr12 29594253 29594539 -114687950 + L1MEc LINE L1 1428 1721 -4675 296 269 118 0 chr12 29594540 29594632 -114687857 - MER2 DNA MER2_type 0 345 243 336 143 16 16 chr12 29594632 29594695 -114687794 + LTR9 LTR ERV1 1 63 -549 1223 177 14 23 chr12 29594805 29595025 -114687464 + HUERS-P3 LTR ERV1 8701 8918 -1 2917 176 68 23 chr12 29595028 29595641 -114686848 + LTR9B LTR ERV1 4 644 0 1431 176 17 0 chr12 29595644 29595883 -114686606 - MER2 DNA MER2_type -102 243 1 627 261 33 68 chr12 29595901 29596114 -114686375 + L1MEc LINE L1 1739 1958 -4438 2140 98 28 0 chr12 29596114 29596400 -114686089 + AluSc SINE Alu 10 303 -6 627 261 33 68 chr12 29596400 29596669 -114685820 + L1MEc LINE L1 1958 2204 -4192 1322 259 84 50 chr12 29596683 29597197 -114685292 + L1MEc LINE L1 2256 2804 -3411 1869 105 72 56 chr12 29597197 29597502 -114684987 + AluSg SINE Alu 1 310 0 1322 259 84 50 chr12 29597502 29597724 -114684765 + L1MEc LINE L1 2804 3017 -3198 5179 224 16 22 chr12 29597742 29599408 -114683081 + L1PA15 LINE L1 1123 2798 -3999 2893 249 42 11 chr12 29599410 29600461 -114682028 - L1M4 LINE L1 -2786 3360 2277 3697 48 0 2 chr12 29600466 29600920 -114681569 - L1PA5 LINE L1 -13 6141 5689 4708 50 2 0 chr12 29600920 29601819 -114680670 + L1PA5 LINE L1 4797 5697 -457 * 14411 186 11 23 chr12 29601803 29604532 -114677957 + L1PA15 LINE L1 2778 5536 -1280 2106 152 25 0 chr12 29604532 29604887 -114677602 + THE1B LTR MaLR 1 364 0 14411 186 11 23 chr12 29604887 29606074 -114676415 + L1PA15 LINE L1 5536 6660 -156 2185 115 3 0 chr12 29606074 29606379 -114676110 + AluSp SINE Alu 6 311 -2 14411 186 11 23 chr12 29606379 29606530 -114675959 + L1PA15 LINE L1 6660 6811 -5 723 274 141 5 chr12 29606528 29606974 -114675515 + L1M4 LINE L1 2944 3450 -2696 * 1172 259 11 32 chr12 29606975 29607059 -114675430 + L1MCc LINE L1 18 102 -6321 207 0 0 0 chr12 29607059 29607082 -114675407 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1172 259 11 32 chr12 29607082 29607368 -114675121 + L1MCc LINE L1 102 380 -6043 2101 109 0 33 chr12 29607368 29607671 -114674818 - AluSq SINE Alu 0 313 21 5673 231 47 51 chr12 29607671 29607773 -114674716 - L1M4 LINE L1 -592 5582 5481 2252 126 0 0 chr12 29607773 29608083 -114674406 - AluSx SINE Alu -2 310 1 5673 231 47 51 chr12 29608083 29610312 -114672177 - L1M4 LINE L1 -693 5481 3267 513 353 140 25 chr12 29610339 29610968 -114671521 + L2 LINE L2 2031 2731 -583 191 267 10 69 chr12 29611450 29611551 -114670938 - L2 LINE L2 -251 3021 2927 641 134 9 0 chr12 29612226 29612338 -114670151 + (TCTA)n Simple_repeat Simple_repeat 4 116 0 314 343 69 23 chr12 29612808 29613024 -114669465 + L3b LINE CR1 1243 1468 -115 28 29 0 0 chr12 29613218 29613253 -114669236 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr12 29613389 29613431 -114669058 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr12 29613705 29613740 -114668749 + AT_rich Low_complexity Low_complexity 1 35 0 1019 39 13 32 chr12 29614319 29614474 -114668015 + (GAAA)n Simple_repeat Simple_repeat 1 152 0 252 0 0 0 chr12 29615631 29615659 -114666830 + (TG)n Simple_repeat Simple_repeat 1 28 0 365 289 74 32 chr12 29615664 29615854 -114666635 + MIR3 SINE MIR 4 201 -7 186 221 15 73 chr12 29616933 29617001 -114665488 - L2 LINE L2 -4 3309 3246 190 286 0 0 chr12 29617071 29617120 -114665369 - L2 LINE L2 -88 3225 3177 280 290 56 31 chr12 29617273 29617435 -114665054 + L2 LINE L2 1890 2055 -1259 309 352 102 67 chr12 29617446 29617878 -114664611 + L2 LINE L2 2371 2817 -497 269 169 17 0 chr12 29621008 29621067 -114661422 + GA-rich Low_complexity Low_complexity 1 60 0 288 0 0 0 chr12 29621532 29621564 -114660925 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 1615 220 95 64 chr12 29623433 29624256 -114658233 - Charlie2 DNA MER1_type 0 2862 2015 416 264 54 31 chr12 29624370 29624499 -114657990 - MER34 LTR ERV1 -30 512 381 562 87 10 48 chr12 29624552 29624655 -114657834 - L1PA3 LINE L1 0 6155 6057 374 270 63 9 chr12 29624762 29624873 -114657616 - MER34 LTR ERV1 -45 497 381 2124 20 0 0 chr12 29624929 29625176 -114657313 - L1PA3 LINE L1 0 6155 5909 377 290 62 44 chr12 29625310 29625582 -114656907 - MER34 LTR ERV1 -265 277 1 184 320 21 31 chr12 29625597 29625694 -114656795 - L2 LINE L2 -1269 2045 1950 743 281 87 40 chr12 29626016 29626084 -114656405 - L1M4 LINE L1 -1592 4554 4491 1800 175 3 7 chr12 29626084 29626375 -114656114 - AluJb SINE Alu -22 290 1 743 281 87 40 chr12 29626375 29627187 -114655302 - L1M4 LINE L1 -1655 4491 3632 307 172 0 78 chr12 29627198 29627262 -114655227 + MER21B LTR ERV1 1 59 -804 2493 177 27 2 chr12 29627374 29627776 -114654713 + MER21B LTR ERV1 328 739 -124 573 260 101 28 chr12 29628023 29628311 -114654178 - L1M4 LINE L1 -2767 3379 3071 813 157 15 12 chr12 29628345 29628758 -114653731 + CT-rich Low_complexity Low_complexity 1 414 0 213 39 0 0 chr12 29628760 29628786 -114653703 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 345 298 51 34 chr12 29628825 29629003 -114653486 - HAL1 LINE L1 -1044 1463 1283 229 431 0 15 chr12 29630851 29630988 -114651501 + L3 LINE CR1 1066 1200 -377 323 297 110 26 chr12 29631434 29631589 -114650900 + MIR3 SINE MIR 41 208 0 912 325 8 0 chr12 29632537 29632786 -114649703 - MIR SINE MIR -4 258 8 667 232 0 0 chr12 29632899 29633024 -114649465 - FLAM_C SINE Alu -18 125 1 303 111 111 0 chr12 29634416 29634470 -114648019 + MLT1C LTR MaLR 37 96 -371 1790 192 101 16 chr12 29634521 29634949 -114647540 - MLT1C LTR MaLR -3 464 1 404 287 8 31 chr12 29635303 29635432 -114647057 + L2 LINE L2 3188 3313 0 2325 100 7 0 chr12 29635498 29635797 -114646692 + AluSx SINE Alu 1 301 -11 250 193 175 0 chr12 29635906 29635963 -114646526 + MIR3 SINE MIR 127 193 -15 228 297 64 59 chr12 29637145 29637347 -114645142 - L2 LINE L2 -36 3277 3075 1885 109 4 0 chr12 29639309 29639565 -114642924 - AluSx SINE Alu -55 257 1 265 350 55 32 chr12 29640619 29640839 -114641650 + MIR SINE MIR 38 262 0 587 354 70 34 chr12 29642049 29642637 -114639852 + L2 LINE L2 2063 2671 -643 220 346 122 56 chr12 29642842 29643056 -114639433 + L2 LINE L2 2864 3091 -181 2236 122 0 6 chr12 29643773 29644206 -114638283 + AluSx SINE Alu 3 433 0 630 285 40 24 chr12 29646524 29646773 -114635716 - MIR SINE MIR -7 255 3 236 266 0 31 chr12 29647201 29647265 -114635224 - MLT1K LTR MaLR -339 249 188 623 251 37 0 chr12 29647894 29648057 -114634432 + MLT1E1 LTR MaLR 93 261 -393 880 61 0 17 chr12 29648096 29648211 -114634278 - AluSg/x SINE Alu 0 310 198 403 309 30 121 chr12 29648267 29648698 -114633791 + L2 LINE L2 2875 3266 -6 220 150 17 50 chr12 29649042 29649102 -114633387 + (TA)n Simple_repeat Simple_repeat 2 59 0 349 263 33 59 chr12 29649126 29649278 -114633211 - MIR SINE MIR -102 160 13 22 0 0 0 chr12 29651065 29651087 -114631402 + AT_rich Low_complexity Low_complexity 1 22 0 3015 192 68 51 chr12 29651101 29652028 -114630461 - L1MB8 LINE L1 -38 6140 5198 308 358 108 50 chr12 29652134 29653162 -114629327 + L2 LINE L2 1816 2912 -402 1836 225 57 97 chr12 29653162 29653553 -114628936 - MLT1E1 LTR MaLR 0 654 300 2329 101 0 0 chr12 29653553 29653850 -114628639 + AluY SINE Alu 1 297 -14 1836 225 57 97 chr12 29653850 29654139 -114628350 - MLT1E1 LTR MaLR -354 300 1 308 358 108 50 chr12 29654139 29654193 -114628296 + L2 LINE L2 2912 2961 -353 6448 126 9 30 chr12 29654405 29655419 -114627070 - L1MA2 LINE L1 0 6304 5333 368 91 212 0 chr12 29655419 29655485 -114627004 - MADE1 DNA Mariner 0 80 1 6448 126 9 30 chr12 29655485 29655997 -114626492 - L1MA2 LINE L1 -971 5333 4812 301 258 125 16 chr12 29656905 29657033 -114625456 + L2 LINE L2 3172 3313 0 25 31 0 0 chr12 29657567 29657599 -114624890 + AT_rich Low_complexity Low_complexity 1 32 0 233 344 61 0 chr12 29657745 29657876 -114624613 + MIR3 SINE MIR 64 202 -6 408 277 8 0 chr12 29659273 29659392 -114623097 - MER103 DNA DNA -14 152 33 185 255 314 0 chr12 29660914 29661016 -114621473 + MIR SINE MIR 52 185 -77 960 218 10 0 chr12 29661902 29662108 -114620381 - MLT1C LTR MaLR -2 465 258 2053 136 72 20 chr12 29662108 29662454 -114620035 + THE1B LTR MaLR 1 364 0 10516 103 31 0 chr12 29662454 29663979 -114618510 + THE1B-int LTR MaLR 1 1572 -8 2121 130 72 17 chr12 29663987 29664332 -114618157 + THE1B LTR MaLR 1 364 0 1149 157 77 28 chr12 29664332 29664386 -114618103 - MLT1C LTR MaLR -205 262 212 381 43 0 0 chr12 29664386 29664433 -114618056 + (TG)n Simple_repeat Simple_repeat 2 48 0 1149 157 77 28 chr12 29664433 29664626 -114617863 - MLT1C LTR MaLR -255 212 3 181 301 0 36 chr12 29664960 29665043 -114617446 + L2 LINE L2 1944 2023 -1291 1718 175 146 13 chr12 29665046 29665424 -114617065 + MSTA LTR MaLR 1 428 0 7293 183 106 1 chr12 29665424 29666918 -114615571 + MSTA-int LTR MaLR 1 1651 0 1642 160 114 58 chr12 29666918 29667311 -114615178 + MSTA LTR MaLR 1 415 -13 315 391 99 18 chr12 29668413 29668868 -114613621 + L2 LINE L2 2240 2731 -583 1792 220 19 3 chr12 29670426 29670785 -114611704 - Tigger7 DNA MER2_type -2121 366 2 1643 233 139 28 chr12 29670796 29672084 -114610405 + L1M4 LINE L1 1321 2806 -3576 1973 146 0 7 chr12 29672084 29672378 -114610111 - AluSx SINE Alu -20 292 1 1643 233 139 28 chr12 29672378 29672521 -114609968 + L1M4 LINE L1 2806 2932 -3450 1244 191 22 4 chr12 29672516 29672789 -114609700 + L1M4 LINE L1 5538 5815 -605 * 6300 128 23 8 chr12 29674032 29675711 -114606778 - L1MA3 LINE L1 0 6305 4600 361 379 39 0 chr12 29675770 29675923 -114606566 + L2 LINE L2 2872 3030 -283 24 0 0 0 chr12 29676078 29676102 -114606387 + AT_rich Low_complexity Low_complexity 1 24 0 2109 136 0 0 chr12 29676109 29676411 -114606078 + AluSq SINE Alu 1 302 -11 781 256 89 117 chr12 29676444 29677013 -114605476 - L2 LINE L2 -5 3308 2700 404 148 0 0 chr12 29677013 29677074 -114605415 - AluS SINE Alu -223 90 30 781 256 89 117 chr12 29677074 29677239 -114605250 - L2 LINE L2 -613 2700 2532 324 208 56 96 chr12 29677243 29677368 -114605121 - MIR SINE MIR -11 251 132 693 263 84 20 chr12 29677433 29677806 -114604683 + LTR16A LTR ERVL 29 445 -12 21 0 0 0 chr12 29679761 29679782 -114602707 + AT_rich Low_complexity Low_complexity 1 21 0 2082 112 3 20 chr12 29680093 29680398 -114602091 - AluSx SINE Alu -10 302 3 829 289 45 4 chr12 29680525 29680767 -114601722 - MIR SINE MIR -1 261 10 312 277 181 46 chr12 29681328 29681566 -114600923 - L1ME3 LINE L1 -211 5951 5682 280 180 0 49 chr12 29681606 29681667 -114600822 + MER5B DNA MER1_type 8 65 -113 311 288 34 20 chr12 29681713 29681859 -114600630 - L1ME3 LINE L1 -519 5651 5504 2304 110 0 0 chr12 29681984 29682293 -114600196 - AluY SINE Alu -2 309 1 329 274 204 22 chr12 29682390 29682660 -114599829 + Tigger8 DNA MER2_type 206 524 -142 197 43 0 0 chr12 29683451 29683474 -114599015 + (A)n Simple_repeat Simple_repeat 1 23 0 272 297 7 39 chr12 29683670 29683825 -114598664 + GA-rich Low_complexity Low_complexity 4 153 0 * 296 316 11 52 chr12 29683804 29684060 -114598429 + G-rich Low_complexity Low_complexity 1 245 0 5293 176 29 37 chr12 29684194 29685447 -114597042 + MER57-int LTR ERV1 4579 5821 -1716 419 186 7 103 chr12 29685774 29685919 -114596570 + MER57-int LTR ERV1 5825 5955 -1582 764 315 59 44 chr12 29686829 29687238 -114595251 - L2 LINE L2 -76 3237 2823 369 43 29 29 chr12 29689511 29689580 -114592909 + (TTTA)n Simple_repeat Simple_repeat 2 168 0 2002 114 0 24 chr12 29689580 29689732 -114592757 - AluSx SINE Alu -1 351 197 1778 134 7 20 chr12 29689732 29690031 -114592458 - AluY SINE Alu -14 297 3 2002 114 0 24 chr12 29690031 29690167 -114592322 - AluSx SINE Alu -155 197 2 630 169 7 84 chr12 29690168 29690310 -114592179 - MER57-int LTR ERV1 -1582 5955 5825 5848 176 33 39 chr12 29690640 29691974 -114590515 - MER57-int LTR ERV1 -1327 3553 3408 1765 184 75 16 chr12 29693385 29693814 -114588675 - Charlie1 DNA MER1_type 0 2761 2308 438 208 67 8 chr12 29693810 29693930 -114588559 - Charlie1 DNA MER1_type -2591 170 44 * 2518 201 102 33 chr12 29694806 29695481 -114587008 + MER72 LTR ERV1 1 722 0 286 328 74 33 chr12 29695494 29695671 -114586818 + L2 LINE L2 2901 3060 -212 189 345 63 21 chr12 29696369 29696560 -114585929 + L2 LINE L2 1902 2100 -1214 267 345 90 0 chr12 29696629 29696774 -114585715 + MIR3 SINE MIR 36 193 -15 473 305 62 46 chr12 29696928 29697299 -114585190 + L1ME4a LINE L1 5528 5904 -217 790 323 75 52 chr12 29698001 29698584 -114583905 + L3 LINE CR1 263 859 -718 749 315 59 44 chr12 29699440 29699849 -114582640 - L2 LINE L2 -76 3237 2823 369 326 17 50 chr12 29701972 29702153 -114580336 - MIR SINE MIR -12 250 76 471 226 157 19 chr12 29702228 29702387 -114580102 + MER5A DNA MER1_type 9 189 0 212 285 146 15 chr12 29704473 29704603 -114577886 - MIR3 SINE MIR -54 154 8 256 309 40 96 chr12 29704954 29705203 -114577286 - MIR SINE MIR -14 248 14 204 314 29 29 chr12 29705255 29705360 -114577129 + L2 LINE L2 3188 3292 -21 2348 97 0 22 chr12 29705403 29705722 -114576767 + AluSx SINE Alu 1 312 0 5589 195 29 36 chr12 29705727 29706941 -114575548 + MER57A-int LTR ERV1 5939 7143 -394 731 139 25 0 chr12 29706942 29707064 -114575425 + LTR54B LTR ERV1 1 125 -373 794 238 55 25 chr12 29707078 29707313 -114575176 + MER57A-int LTR ERV1 7274 7515 -22 2022 187 20 18 chr12 29707323 29707718 -114574771 + MER57A LTR ERV1 8 403 0 872 254 86 5 chr12 29707966 29708186 -114574303 - MIR SINE MIR -22 240 3 297 0 0 0 chr12 29708308 29708341 -114574148 + (CA)n Simple_repeat Simple_repeat 2 34 0 2056 139 0 7 chr12 29709028 29709331 -114573158 + AluSx SINE Alu 1 301 -11 26 0 0 0 chr12 29710547 29710573 -114571916 + AT_rich Low_complexity Low_complexity 1 26 0 228 377 9 9 chr12 29711462 29711568 -114570921 + MIR SINE MIR 41 146 -116 23 0 0 0 chr12 29712017 29712040 -114570449 + AT_rich Low_complexity Low_complexity 1 23 0 2281 105 3 0 chr12 29712879 29713175 -114569314 + AluSx SINE Alu 1 297 -15 390 178 50 40 chr12 29713644 29713745 -114568744 - L1MC4 LINE L1 0 8042 7941 365 338 73 28 chr12 29714191 29714478 -114568011 + L2 LINE L2 3014 3313 0 386 329 155 44 chr12 29714882 29715198 -114567291 + L2 LINE L2 2521 2871 -443 927 272 46 37 chr12 29715274 29715488 -114567001 - L1M4 LINE L1 -1756 4390 4170 7595 126 48 3 chr12 29715488 29716684 -114565805 + HSMAR2 DNA Mariner 3 1257 -45 198 103 0 0 chr12 29716684 29716713 -114565776 + (TA)n Simple_repeat Simple_repeat 1 29 0 7595 126 48 3 chr12 29716713 29716759 -114565730 + HSMAR2 DNA Mariner 1257 1300 -2 927 272 46 37 chr12 29716759 29716893 -114565596 - L1M4 LINE L1 -1976 4170 4039 387 176 0 0 chr12 29716938 29717012 -114565477 - MLT1E LTR MaLR 0 593 520 399 233 0 0 chr12 29717012 29717121 -114565368 - L1MEc LINE L1 -3431 2784 2676 1033 261 49 10 chr12 29717131 29717408 -114565081 + MLT1E LTR MaLR 275 533 -60 569 235 23 60 chr12 29717411 29717628 -114564861 - L1MEc LINE L1 -3801 2414 2206 384 287 78 30 chr12 29717636 29717803 -114564686 - L1MEc LINE L1 -4198 2198 2024 4423 229 48 20 chr12 29718412 29719635 -114562854 + L1M2 LINE L1 1258 2515 -4334 1352 343 44 19 chr12 29719653 29720221 -114562268 + L1PA16 LINE L1 793 1374 -6200 358 338 8 15 chr12 29720268 29720401 -114562088 + L1PA16 LINE L1 2167 2298 -5276 12692 233 27 16 chr12 29721105 29723879 -114558610 + L1PA16 LINE L1 2204 4947 -2657 1857 156 0 4 chr12 29723879 29724183 -114558306 + AluSg SINE Alu 12 314 0 12692 233 27 16 chr12 29724183 29725200 -114557289 + L1PA16 LINE L1 4947 5952 -1652 2326 114 16 47 chr12 29725200 29725587 -114556902 - THE1C LTR MaLR 0 375 1 12692 233 27 16 chr12 29725587 29727027 -114555462 + L1PA16 LINE L1 5952 7431 -173 8567 203 21 21 chr12 29727006 29728019 -114554470 + L1PBa LINE L1 1809 2820 -4042 * 2114 119 0 0 chr12 29728019 29728312 -114554177 + AluSc SINE Alu 1 293 -16 8567 203 21 21 chr12 29728312 29730153 -114552336 + L1PBa LINE L1 2820 4727 -2135 2566 86 3 3 chr12 29732069 29732417 -114550072 + THE1A LTR MaLR 1 348 -7 240 191 213 106 chr12 29734686 29734827 -114547662 - MER5A DNA MER1_type -24 165 10 * 330 214 130 53 chr12 29734820 29734951 -114547538 + MIR SINE MIR 88 228 -34 27 29 0 0 chr12 29735584 29735618 -114546871 + AT_rich Low_complexity Low_complexity 1 34 0 472 309 48 18 chr12 29736049 29736217 -114546272 + MER5B DNA MER1_type 4 176 -2 318 296 61 35 chr12 29736348 29736463 -114546026 - MIR SINE MIR -142 120 3 207 208 0 19 chr12 29736465 29736518 -114545971 + A-rich Low_complexity Low_complexity 4 55 0 2171 132 0 0 chr12 29736723 29737026 -114545463 + AluSx SINE Alu 3 305 -7 225 154 0 0 chr12 29737668 29737707 -114544782 + A-rich Low_complexity Low_complexity 1 39 0 1871 117 0 29 chr12 29737813 29738087 -114544402 + AluSg SINE Alu 1 266 -44 865 275 90 60 chr12 29738177 29738745 -114543744 + HAL1 LINE L1 1210 1794 -713 218 258 30 30 chr12 29739099 29739165 -114543324 + MER5A DNA MER1_type 7 72 -117 456 215 0 0 chr12 29739175 29739268 -114543221 - L1MC3 LINE L1 -928 6857 6765 1547 174 3 38 chr12 29740680 29740973 -114541516 + AluJo SINE Alu 10 292 -20 1401 278 43 23 chr12 29741334 29741919 -114540570 - L2 LINE L2 -4 3309 2714 21 0 0 0 chr12 29743835 29743856 -114538633 + AT_rich Low_complexity Low_complexity 1 21 0 210 37 0 0 chr12 29744003 29744030 -114538459 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 335 244 76 34 chr12 29745477 29745596 -114536893 + MER103 DNA DNA 41 164 -2 816 318 55 21 chr12 29745930 29746064 -114536425 + L3 LINE CR1 607 735 -842 2217 135 28 6 chr12 29746064 29746420 -114536069 + THE1B LTR MaLR 1 364 0 816 318 55 21 chr12 29746420 29746615 -114535874 + L3 LINE CR1 735 947 -630 974 272 20 8 chr12 29747207 29747461 -114535028 - MIR SINE MIR -1 261 5 261 241 0 0 chr12 29748206 29748260 -114534229 + (TG)n Simple_repeat Simple_repeat 1 54 0 323 224 35 0 chr12 29748478 29748563 -114533926 + MIR SINE MIR 164 251 -11 284 339 23 0 chr12 29748844 29748974 -114533515 - L1ME LINE L1 -546 5618 5486 1016 250 107 66 chr12 29748996 29749078 -114533411 - L1ME2 LINE L1 -6 6160 6083 6027 93 12 8 chr12 29749078 29750920 -114531569 - L1PA13 LINE L1 0 6163 4305 1016 250 107 66 chr12 29750920 29751321 -114531168 - L1ME2 LINE L1 -83 6083 5657 233 57 29 0 chr12 29752920 29752955 -114529534 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 1007 251 27 0 chr12 29753721 29753944 -114528545 - MIR SINE MIR -33 229 1 236 363 60 49 chr12 29755013 29755308 -114527181 - L2 LINE L2 -213 3059 2765 2829 145 14 6 chr12 29755925 29756416 -114526073 - L1MB3 LINE L1 -14 6169 5675 560 247 86 6 chr12 29757450 29757612 -114524877 - L1ME3A LINE L1 -21 6149 5975 2172 281 117 29 chr12 29757661 29759196 -114523293 - L1ME2 LINE L1 -1237 4909 3240 27 0 0 0 chr12 29761309 29761336 -114521153 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr12 29761935 29761963 -114520526 + AT_rich Low_complexity Low_complexity 1 28 0 737 321 19 0 chr12 29762298 29762507 -114519982 + MIR SINE MIR 29 241 -21 269 290 328 0 chr12 29762535 29762666 -114519823 - MIR SINE MIR -70 192 19 270 233 22 11 chr12 29762785 29762875 -114519614 + (TA)n Simple_repeat Simple_repeat 2 92 0 330 339 85 16 chr12 29764004 29764252 -114518237 + L2 LINE L2 2168 2432 -882 353 217 27 35 chr12 29764884 29765058 -114517431 + MLT1I LTR MaLR 316 409 0 487 304 81 6 chr12 29765387 29765548 -114516941 + MIR SINE MIR 20 192 -70 23 24 0 24 chr12 29766479 29766498 -114515991 + AT_rich Low_complexity Low_complexity 1 19 -21 1685 54 27 0 chr12 29766498 29766720 -114515769 + L1MA1 LINE L1 6075 6302 0 23 24 0 24 chr12 29766720 29766741 -114515748 + AT_rich Low_complexity Low_complexity 19 40 0 2937 196 27 27 chr12 29769158 29769852 -114512637 + L1MC3 LINE L1 7092 7785 0 216 0 0 0 chr12 29769980 29770004 -114512485 + (TG)n Simple_repeat Simple_repeat 2 25 0 3446 71 16 0 chr12 29770100 29770536 -114511953 - MLT2A1 LTR ERVL 0 444 2 289 325 73 16 chr12 29770684 29770807 -114511682 + MIR3 SINE MIR 25 154 -54 207 0 0 0 chr12 29773129 29773152 -114509337 + (CA)n Simple_repeat Simple_repeat 2 24 0 414 39 0 0 chr12 29773599 29773651 -114508838 + (TG)n Simple_repeat Simple_repeat 1 52 0 183 272 105 35 chr12 29773743 29773857 -114508632 - MIR SINE MIR -102 160 39 227 333 55 0 chr12 29774036 29774126 -114508363 - MIR SINE MIR -71 137 41 189 384 48 14 chr12 29774670 29774816 -114507673 + L2 LINE L2 3161 3311 -2 220 229 49 16 chr12 29775063 29775124 -114507365 - L2 LINE L2 0 3272 3210 180 0 0 0 chr12 29775449 29775469 -114507020 + (TTTTC)n Simple_repeat Simple_repeat 5 24 0 207 0 0 0 chr12 29775472 29775495 -114506994 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2443 38 0 3 chr12 29775497 29775788 -114506701 - AluY SINE Alu -21 290 1 1561 240 57 22 chr12 29775977 29776473 -114506016 + MER39 LTR ERV1 17 707 0 298 329 93 56 chr12 29776726 29776942 -114505547 - L2 LINE L2 -105 3167 2944 21 0 0 0 chr12 29777530 29777551 -114504938 + AT_rich Low_complexity Low_complexity 1 21 0 504 264 66 54 chr12 29778120 29778378 -114504111 + MIR SINE MIR 2 262 0 326 307 53 9 chr12 29778568 29778682 -114503807 - MIR3 SINE MIR -1 207 89 373 300 158 16 chr12 29781572 29781762 -114500727 + MIR SINE MIR 25 241 -21 288 226 93 0 chr12 29783141 29783281 -114499208 + L1ME3A LINE L1 1525 1873 -4734 517 252 64 41 chr12 29783594 29783908 -114498581 + L1ME3A LINE L1 2531 2851 -3575 21 0 0 0 chr12 29783943 29783964 -114498525 + AT_rich Low_complexity Low_complexity 1 21 0 244 248 83 18 chr12 29784663 29784772 -114497717 + L1ME3A LINE L1 2876 2991 -3435 285 226 143 56 chr12 29784889 29785141 -114497348 + L1ME3A LINE L1 4688 4961 -1465 1041 167 56 123 chr12 29785151 29785450 -114497039 + AluJo SINE Alu 44 324 0 2010 252 94 8 chr12 29785524 29786527 -114495962 + L1ME3A LINE L1 5104 6192 -257 204 152 45 0 chr12 29786536 29786602 -114495887 + (TA)n Simple_repeat Simple_repeat 2 70 0 419 298 83 30 chr12 29786864 29787032 -114495457 + MIR SINE MIR 30 206 -56 2020 126 0 26 chr12 29787104 29787413 -114495076 + AluSg SINE Alu 1 301 -9 334 276 112 47 chr12 29787473 29787643 -114494846 - MIR SINE MIR -6 256 76 232 355 18 9 chr12 29789363 29789473 -114493016 - L3b LINE CR1 -362 1221 1111 472 319 107 9 chr12 29789986 29790202 -114492287 + MIR SINE MIR 8 244 -18 342 130 19 0 chr12 29790904 29790958 -114491531 - AluJb SINE Alu -161 141 87 1962 136 11 0 chr12 29791268 29791554 -114490935 + AluJb SINE Alu 1 289 -23 190 398 17 23 chr12 29791927 29792103 -114490386 + L2 LINE L2 2884 3058 -214 188 238 63 16 chr12 29793476 29793539 -114488950 - L3 LINE CR1 -7 1570 1505 181 328 187 45 chr12 29794204 29794338 -114488151 + MIR3 SINE MIR 33 185 -23 1781 139 0 45 chr12 29795394 29795682 -114486807 + AluSx SINE Alu 1 275 -37 246 62 0 0 chr12 29796291 29796323 -114486166 + (CA)n Simple_repeat Simple_repeat 1 32 0 449 240 19 29 chr12 29796353 29796457 -114486032 + MER5A DNA MER1_type 10 112 -77 25 31 0 0 chr12 29796850 29796882 -114485607 + AT_rich Low_complexity Low_complexity 1 32 0 555 292 119 26 chr12 29797797 29798023 -114484466 + MIR SINE MIR 16 262 0 228 122 0 0 chr12 29805178 29805219 -114477270 + (TAAAAA)n Simple_repeat Simple_repeat 5 45 0 843 235 135 43 chr12 29805831 29805938 -114476551 + MLT1G LTR MaLR 2 98 -469 2284 67 7 11 chr12 29805938 29806222 -114476267 + AluSc SINE Alu 14 296 -13 843 235 135 43 chr12 29806222 29806577 -114475912 + MLT1G LTR MaLR 98 454 -113 1507 86 9 0 chr12 29806587 29806809 -114475680 - L1PA8 LINE L1 -223 5931 5708 1338 108 38 58 chr12 29806809 29807037 -114475452 + L1PA8 LINE L1 5932 6166 -6 427 165 66 0 chr12 29807069 29807160 -114475329 + MLT1G LTR MaLR 447 543 -12 286 22 65 0 chr12 29807497 29807543 -114474946 + T-rich Low_complexity Low_complexity 3 51 0 622 216 216 0 chr12 29808430 29808467 -114474022 - MER3 DNA MER1_type -5 204 176 204 67 0 0 chr12 29808467 29808497 -114473992 + (TTAAA)n Simple_repeat Simple_repeat 1 30 0 622 216 216 0 chr12 29808497 29808626 -114473863 - MER3 DNA MER1_type -33 176 2 784 337 116 0 chr12 29809346 29809744 -114472745 + L3 LINE CR1 1128 1571 -6 2319 145 30 35 chr12 29811127 29811561 -114470928 + MSTB1 LTR MaLR 1 432 0 948 260 63 32 chr12 29811781 29812192 -114470297 + L1ME1 LINE L1 54 477 -5919 1881 196 44 5 chr12 29812198 29812632 -114469857 + L1MC2 LINE L1 5881 6331 -13 482 228 80 25 chr12 29812639 29812876 -114469613 + L1ME1 LINE L1 816 1065 -5331 255 189 113 44 chr12 29812948 29813107 -114469382 + L1ME1 LINE L1 3134 3303 -2912 1633 176 113 36 chr12 29813110 29813501 -114468988 + MLT2B1 LTR ERVL 1 421 -99 326 194 151 43 chr12 29813490 29813583 -114468906 - MLT1B LTR MaLR -287 103 1 * 911 236 38 124 chr12 29813784 29814211 -114468278 - MLT1B LTR MaLR 0 390 1 4090 223 71 53 chr12 29814212 29815511 -114466978 - MLT1B-int LTR MaLR -1 1370 49 1528 168 75 40 chr12 29815540 29815741 -114466748 - MLT1B LTR MaLR -2 388 195 189 0 0 0 chr12 29815741 29815762 -114466727 + (GA)n Simple_repeat Simple_repeat 2 22 0 1528 168 75 40 chr12 29815762 29815799 -114466690 - MLT1B LTR MaLR -195 195 161 2039 134 17 3 chr12 29815799 29816090 -114466399 + AluSx SINE Alu 1 295 -17 1528 168 75 40 chr12 29816090 29816225 -114466264 - MLT1B LTR MaLR -229 161 1 333 283 28 0 chr12 29816225 29816370 -114466119 + L1ME1 LINE L1 3333 3481 -2734 1601 246 132 7 chr12 29816398 29817082 -114465407 + L1ME1 LINE L1 4301 5069 -1146 539 253 14 92 chr12 29817258 29817551 -114464938 + MER93b LTR ERV1 104 373 0 1886 229 55 29 chr12 29817554 29817732 -114464757 + L1ME1 LINE L1 5077 5249 -986 797 146 119 26 chr12 29817732 29817883 -114464606 + FRAM SINE Alu 1 165 -1 1886 229 55 29 chr12 29817883 29818258 -114464231 + L1ME1 LINE L1 5249 5658 -577 1487 162 71 34 chr12 29818258 29818554 -114463935 - AluJb SINE Alu -1 311 5 1886 229 55 29 chr12 29818554 29818861 -114463628 + L1ME1 LINE L1 5658 5956 -279 411 248 78 9 chr12 29818867 29819036 -114463453 + L1MA10 LINE L1 5984 6324 -4 2115 74 50 20 chr12 29819257 29819556 -114462933 - AluSx SINE Alu -4 308 1 460 247 115 17 chr12 29820026 29820200 -114462289 + L1ME3 LINE L1 5821 6011 -151 186 43 0 0 chr12 29820229 29820252 -114462237 + (TG)n Simple_repeat Simple_repeat 2 24 0 1045 219 65 41 chr12 29820294 29820710 -114461779 - L1MC5 LINE L1 -400 7561 7136 271 240 260 0 chr12 29820798 29820894 -114461595 - L2 LINE L2 -691 2623 2503 205 121 30 0 chr12 29820875 29820908 -114461581 - MIR SINE MIR -3 259 226 * 22 0 0 0 chr12 29820918 29820940 -114461549 + AT_rich Low_complexity Low_complexity 1 22 0 239 271 0 52 chr12 29820940 29821036 -114461453 - MIR SINE MIR -21 241 151 2285 242 69 14 chr12 29821056 29821276 -114461213 + MER76 LTR ERV 1 207 -481 2333 165 21 0 chr12 29821276 29821658 -114460831 - MSTD LTR MaLR -2 394 5 2285 242 69 14 chr12 29821658 29822073 -114460416 + MER76 LTR ERV 207 671 -17 226 217 0 0 chr12 29822179 29822225 -114460264 + GA-rich Low_complexity Low_complexity 1 46 0 6295 19 4 0 chr12 29822432 29823162 -114459327 - L1PA2 LINE L1 -2 6153 5421 3797 23 0 4 chr12 29823162 29823690 -114458799 + L1PA2 LINE L1 4918 5443 -712 294 296 106 28 chr12 29824809 29824951 -114457538 + L2 LINE L2 3161 3313 0 856 199 37 0 chr12 29826452 29826613 -114455876 + FRAM SINE Alu 1 167 -9 2550 233 59 24 chr12 29826775 29827617 -114454872 + L1MC4 LINE L1 7170 8041 -1 603 27 0 0 chr12 29827742 29827815 -114454674 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 1735 136 59 67 chr12 29828047 29828263 -114454226 + L1MA9 LINE L1 5926 6142 -170 2246 118 0 3 chr12 29828263 29828567 -114453922 + AluSg SINE Alu 1 303 -7 1735 136 59 67 chr12 29828567 29828672 -114453817 + L1MA9 LINE L1 6142 6246 -66 276 30 0 0 chr12 29828672 29828705 -114453784 + (TG)n Simple_repeat Simple_repeat 2 34 0 186 43 0 0 chr12 29828704 29828727 -114453762 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 1735 136 59 67 chr12 29828705 29828794 -114453695 + L1MA9 LINE L1 6246 6312 0 26 30 0 0 chr12 29830310 29830343 -114452146 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr12 29830383 29830407 -114452082 + AT_rich Low_complexity Low_complexity 1 24 0 563 338 71 30 chr12 29830463 29830729 -114451760 + L2 LINE L2 3032 3308 -5 237 333 34 8 chr12 29830878 29830995 -114451494 - MLT1K LTR MaLR -342 246 127 1057 308 45 26 chr12 29831286 29831712 -114450777 - L2 LINE L2 -1 3312 2879 291 54 0 0 chr12 29832373 29832410 -114450079 + (TA)n Simple_repeat Simple_repeat 2 38 0 219 286 110 0 chr12 29833365 29833456 -114449033 + MIR3 SINE MIR 105 205 -3 287 349 72 48 chr12 29833983 29834232 -114448257 + L2 LINE L2 565 819 -2495 575 329 147 52 chr12 29834500 29834835 -114447654 + L2 LINE L2 2265 2567 -705 2090 125 3 0 chr12 29834835 29835131 -114447358 - AluSp SINE Alu -16 297 1 575 329 147 52 chr12 29835131 29835726 -114446763 + L2 LINE L2 2567 3272 0 822 286 48 0 chr12 29835866 29836093 -114446396 - MIR SINE MIR 0 262 25 183 129 0 0 chr12 29836337 29836368 -114446121 + (CA)n Simple_repeat Simple_repeat 2 32 0 529 280 28 0 chr12 29836697 29836840 -114445649 + MIR SINE MIR 57 203 -59 182 338 68 40 chr12 29837165 29837268 -114445221 + L2 LINE L2 2245 2356 -958 2027 135 0 0 chr12 29837268 29837585 -114444904 + AluSx SINE Alu 1 317 0 182 338 68 40 chr12 29837585 29837628 -114444861 + L2 LINE L2 2356 2396 -918 184 329 141 11 chr12 29837746 29837931 -114444558 + L2 LINE L2 2736 2955 -358 228 325 114 9 chr12 29838448 29838562 -114443927 - L2 LINE L2 0 3272 3147 597 325 88 8 chr12 29839538 29839778 -114442711 + MIR SINE MIR 4 262 0 25 31 0 0 chr12 29840039 29840071 -114442418 + AT_rich Low_complexity Low_complexity 1 32 0 33 43 0 0 chr12 29840136 29840183 -114442306 + AT_rich Low_complexity Low_complexity 1 47 0 234 320 147 0 chr12 29840197 29840272 -114442217 - L2 LINE L2 -91 3181 3096 317 375 43 22 chr12 29840324 29840601 -114441888 - LTR16C LTR ERVL -51 440 158 275 316 9 18 chr12 29841153 29841267 -114441222 - HERVL LTR ERVL -502 5152 5040 908 376 21 11 chr12 29841357 29841976 -114440513 - HERVL LTR ERVL -812 4952 4328 404 335 46 10 chr12 29842520 29842717 -114439772 - HERVL LTR ERVL -1851 3803 3600 332 288 35 47 chr12 29843080 29843250 -114439239 - MER21-int LTR ERV1 -396 3795 3628 2451 84 0 6 chr12 29843512 29843823 -114438666 - AluSc SINE Alu 0 309 1 366 245 0 0 chr12 29844057 29844155 -114438334 + (CAAA)n Simple_repeat Simple_repeat 3 100 0 873 270 9 22 chr12 29844778 29845004 -114437485 - MER58A DNA MER1_type -1 223 1 373 297 105 93 chr12 29845225 29845633 -114436856 - LTR16C LTR ERVL 0 491 79 804 198 6 12 chr12 29846321 29846502 -114435987 + FRAM SINE Alu 1 176 0 29 0 0 0 chr12 29846564 29846593 -114435896 + AT_rich Low_complexity Low_complexity 1 29 0 1719 172 26 13 chr12 29847963 29848271 -114434218 + AluJb SINE Alu 1 312 0 301 120 0 0 chr12 29849869 29849919 -114432570 + L1PA16 LINE L1 6117 6166 0 317 228 55 74 chr12 29850273 29850428 -114432061 + MLT1L LTR MaLR 32 287 -305 2791 204 33 23 chr12 29850452 29850843 -114431646 + L1 LINE L1 4018 4421 -1725 2661 151 35 116 chr12 29850843 29851498 -114430991 - MER7C DNA MER2_type 0 602 1 2791 204 33 23 chr12 29851498 29851799 -114430690 + L1 LINE L1 4421 4717 -1429 2703 250 65 17 chr12 29851832 29852781 -114429708 + L1ME1 LINE L1 3887 4881 -1265 413 281 168 0 chr12 29852793 29852989 -114429500 + L1ME1 LINE L1 5035 5263 -883 8267 160 34 14 chr12 29852990 29854137 -114428352 + L1MA4 LINE L1 3712 4835 -1465 2365 149 16 0 chr12 29854137 29854506 -114427983 - THE1C LTR MaLR 0 375 1 8267 160 34 14 chr12 29854506 29855893 -114426596 + L1MA4 LINE L1 4835 6289 -11 471 276 193 4 chr12 29855906 29856181 -114426308 + L1ME1 LINE L1 5257 5583 -583 5100 167 30 25 chr12 29856198 29857163 -114425326 - L1MA7 LINE L1 0 6291 5315 2238 73 13 3 chr12 29857163 29857463 -114425026 - AluSc SINE Alu -6 303 1 5100 167 30 25 chr12 29857463 29857942 -114424547 - L1MA7 LINE L1 -976 5315 4840 556 309 50 23 chr12 29857942 29858201 -114424288 - L1M3d LINE L1 -5621 270 5 1857 258 42 23 chr12 29858210 29858779 -114423710 + L1ME1 LINE L1 5583 6162 -4 703 283 52 20 chr12 29858771 29859175 -114423314 + L1ME2 LINE L1 5000 5420 -743 * 890 228 126 33 chr12 29859157 29859594 -114422895 + L1ME2 LINE L1 5644 6158 -6 279 398 16 8 chr12 29859662 29859790 -114422699 + L2 LINE L2 3182 3310 -3 417 298 53 18 chr12 29862637 29862808 -114419681 + MIR SINE MIR 66 242 -20 1796 148 7 40 chr12 29864205 29864509 -114417980 + AluSx SINE Alu 1 294 -18 288 317 10 0 chr12 29864696 29864800 -114417689 - MER94 DNA DNA -29 105 1 5652 193 38 7 chr12 29866417 29867335 -114415154 - L1MC1 LINE L1 -45 6288 5400 2126 98 44 0 chr12 29867335 29867631 -114414858 - AluSc SINE Alu 0 309 1 5652 193 38 7 chr12 29867631 29868196 -114414293 - L1MC1 LINE L1 -933 5400 4734 1348 225 39 11 chr12 29868196 29868551 -114413938 - MLT1A1 LTR MaLR 0 365 1 5652 193 38 7 chr12 29868551 29868958 -114413531 - L1MC1 LINE L1 -1599 4734 4341 185 359 0 0 chr12 29869983 29870047 -114412442 - MIR3 SINE MIR -24 184 121 340 291 14 54 chr12 29870720 29870868 -114411621 + LTR16C LTR ERVL 300 441 -50 287 347 47 13 chr12 29870881 29871031 -114411458 + ERVL LTR ERVL 5170 5324 -440 563 320 52 34 chr12 29871329 29871598 -114410891 + LTR33 LTR ERVL 1 274 -247 213 283 0 0 chr12 29871779 29871832 -114410657 + (CA)n Simple_repeat Simple_repeat 2 54 0 478 286 17 79 chr12 29872941 29873182 -114409307 + LTR67 LTR ERVL 274 499 -58 228 35 0 0 chr12 29873360 29873389 -114409100 + (TG)n Simple_repeat Simple_repeat 2 30 0 440 324 101 31 chr12 29873470 29874014 -114408475 - L1ME3A LINE L1 -280 5890 5269 1404 195 9 124 chr12 29874795 29875262 -114407227 - MLT2D LTR ERVL 0 414 2 720 212 13 13 chr12 29875661 29875812 -114406677 + MER97b DNA MER1_type? 35 185 -868 1499 219 104 39 chr12 29877876 29878364 -114404125 + MLT2B1 LTR ERVL 1 520 0 348 178 27 0 chr12 29878755 29878828 -114403661 - L1ME2 LINE L1 -2 6162 6088 324 261 81 9 chr12 29878985 29879096 -114403393 + MLT1J2 LTR MaLR 332 450 0 398 89 0 0 chr12 29879654 29879710 -114402779 - MADE1 DNA Mariner 0 80 25 2382 84 3 0 chr12 29879749 29880059 -114402430 + AluSp SINE Alu 1 311 -2 405 310 19 60 chr12 29880152 29880368 -114402121 - L2 LINE L2 -815 2499 2293 243 0 0 0 chr12 29880810 29880837 -114401652 + (TG)n Simple_repeat Simple_repeat 1 27 0 245 29 29 0 chr12 29880837 29880871 -114401618 + (GA)n Simple_repeat Simple_repeat 2 36 0 324 70 0 0 chr12 29881015 29881058 -114401431 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2037 127 0 7 chr12 29881114 29881523 -114400966 + AluSx SINE Alu 1 407 0 326 311 99 56 chr12 29881854 29882227 -114400262 + MLT1K LTR MaLR 196 584 -4 185 333 0 0 chr12 29882265 29882331 -114400158 - MIR SINE MIR -13 249 184 3366 84 4 13 chr12 29882331 29882806 -114399683 + L1PA7 LINE L1 5683 6153 -1 423 39 0 0 chr12 29882906 29882981 -114399508 + L1PA8 LINE L1 6103 6177 0 345 333 33 7 chr12 29882981 29883134 -114399355 - MIR SINE MIR -83 179 23 3049 263 40 21 chr12 29883485 29885302 -114397187 + L1ME1 LINE L1 4199 6049 -117 1485 228 71 32 chr12 29885315 29885750 -114396739 + Charlie6 DNA MER1_type 1172 1623 -1877 5574 146 8 30 chr12 29885751 29886174 -114396315 + L1PA16 LINE L1 4914 5345 -821 2832 94 14 35 chr12 29886174 29886608 -114395881 + L1PA11 LINE L1 5750 6174 0 5574 146 8 30 chr12 29886608 29887076 -114395413 + L1PA16 LINE L1 5345 5783 -383 396 0 0 0 chr12 29887076 29887120 -114395369 + (TG)n Simple_repeat Simple_repeat 2 45 0 5574 146 8 30 chr12 29887120 29887475 -114395014 + L1PA16 LINE L1 5783 6144 -22 3246 198 94 18 chr12 29887475 29888253 -114394236 + Charlie6 DNA MER1_type 1608 2444 -1056 1791 182 3 3 chr12 29888426 29888722 -114393767 - AluJo SINE Alu -16 296 1 1044 176 58 0 chr12 29889861 29890066 -114392423 + L1MB4 LINE L1 5622 5838 -345 * 5693 180 10 7 chr12 29890063 29891179 -114391310 + L1MC1 LINE L1 5184 6306 -27 1276 173 25 0 chr12 29891356 29891593 -114390896 + L1MB4 LINE L1 5820 6062 -118 511 321 32 74 chr12 29891590 29891995 -114390494 + L1MA9 LINE L1 643 1030 -5749 * 2254 290 76 13 chr12 29893179 29894279 -114388210 + L1MA9 LINE L1 1510 2679 -4170 5119 202 12 44 chr12 29894291 29896049 -114386440 + L1MA9 LINE L1 3760 5572 -1276 2023 127 4 0 chr12 29896049 29896325 -114386164 + AluSp SINE Alu 1 277 -36 1305 69 0 0 chr12 29896325 29896498 -114385991 + (GAAA)n Simple_repeat Simple_repeat 1 173 0 5119 202 12 44 chr12 29896498 29896878 -114385611 + L1MA9 LINE L1 5570 6008 -840 2192 160 30 38 chr12 29896875 29897442 -114385047 + L1MA9 LINE L1 6379 7004 -10 * 587 157 25 0 chr12 29897450 29897571 -114384918 + L1MB3 LINE L1 6053 6176 -7 23210 86 8 11 chr12 29897800 29903737 -114378752 + L1PA6 LINE L1 11 6147 -7 36 40 0 0 chr12 29903863 29903913 -114378576 + AT_rich Low_complexity Low_complexity 1 50 0 734 257 125 30 chr12 29904032 29904335 -114378154 + MER74A LTR ERVL 225 556 -2 2066 62 0 8 chr12 29904428 29904715 -114377774 + AluY SINE Alu 29 313 0 238 276 0 0 chr12 29904927 29904985 -114377504 + MER44D DNA MER2_type 2 59 -646 1006 238 99 60 chr12 29904988 29905420 -114377069 + MSTB2 LTR MaLR 1 449 -8 2133 188 12 2 chr12 29905424 29905838 -114376651 + MER44D DNA MER2_type 56 528 -77 666 311 70 4 chr12 29905884 29906112 -114376377 - MIR SINE MIR -7 255 13 5243 167 30 3 chr12 29906528 29907670 -114374819 - L1MC2 LINE L1 -151 6193 5024 27 73 0 0 chr12 29908142 29908197 -114374292 + AT_rich Low_complexity Low_complexity 1 55 0 483 272 105 40 chr12 29908747 29908975 -114373514 - MIR SINE MIR -1 261 19 303 382 62 24 chr12 29909056 29909394 -114373095 + L2 LINE L2 2626 2976 -338 210 128 0 0 chr12 29911080 29911119 -114371370 + (CA)n Simple_repeat Simple_repeat 2 40 0 541 237 23 8 chr12 29911218 29911349 -114371140 + MIR SINE MIR 129 261 -1 2158 126 3 0 chr12 29911349 29911642 -114370847 + AluSx SINE Alu 1 294 -18 301 271 98 23 chr12 29912715 29912848 -114369641 + L1ME4a LINE L1 5977 6119 -2 333 88 44 22 chr12 29913029 29913120 -114369369 + (TA)n Simple_repeat Simple_repeat 1 93 0 6901 58 0 3 chr12 29913127 29914139 -114368350 - L1PA6 LINE L1 -18 6136 5122 10999 199 112 11 chr12 29914139 29918789 -114363700 - L1 LINE L1 -1725 5123 1 645 217 129 41 chr12 29918815 29919156 -114363333 - MER96B DNA MER1_type? -21 396 26 212 308 94 44 chr12 29919194 29919353 -114363136 - L2 LINE L2 -340 2974 2808 2224 67 43 10 chr12 29919581 29919881 -114362608 + AluY SINE Alu 1 310 -1 2759 97 335 4 chr12 29920161 29920677 -114361812 - LTR12 LTR ERV1 -1 687 1 467 248 36 51 chr12 29921453 29921504 -114360985 + MIR SINE MIR 107 157 -105 4374 75 68 21 chr12 29921504 29922132 -114360357 - PABL_A LTR ERV1 -2 658 1 467 248 36 51 chr12 29922132 29922217 -114360272 + MIR SINE MIR 157 241 -21 1767 136 38 95 chr12 29922617 29922986 -114359503 + MER7A DNA MER2_type 1 346 0 233 336 22 22 chr12 29923180 29923317 -114359172 - MIR SINE MIR -17 245 109 2167 116 52 17 chr12 29924347 29924709 -114357780 + THE1C LTR MaLR 1 375 0 289 270 154 87 chr12 29924987 29925343 -114357146 + L2 LINE L2 2934 3313 0 524 84 0 36 chr12 29926209 29926292 -114356197 + MADE1 DNA Mariner 1 80 0 1599 186 7 14 chr12 29926405 29926695 -114355794 + AluJo SINE Alu 9 296 -16 2436 236 64 50 chr12 29926943 29927690 -114354799 + Zaphod DNA AcHobo 11 777 -3254 1667 178 0 20 chr12 29927690 29927988 -114354501 + AluJo SINE Alu 1 292 -20 2436 236 64 50 chr12 29927988 29928206 -114354283 + Zaphod DNA AcHobo 777 990 -3041 1359 220 11 5 chr12 29928207 29928575 -114353914 + Zaphod DNA AcHobo 3597 3966 -65 494 144 112 32 chr12 29929051 29929176 -114353313 - L1MC1 LINE L1 0 6333 6199 * 10331 216 36 16 chr12 29929171 29930486 -114352003 - L1MC1 LINE L1 -41 6572 5285 261 0 0 0 chr12 29930486 29930515 -114351974 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 10331 216 36 16 chr12 29930515 29932736 -114349753 - L1MC1 LINE L1 -1328 5285 2937 2642 32 3 0 chr12 29932736 29933044 -114349445 + AluY SINE Alu 1 309 -2 10331 216 36 16 chr12 29933044 29933748 -114348741 - L1MC1 LINE L1 -3676 2937 2249 320 206 27 14 chr12 29933760 29933833 -114348656 + MER21B LTR ERV1 13 86 -777 334 268 0 0 chr12 29933936 29934007 -114348482 + MER21B LTR ERV1 19 89 -774 2414 222 88 38 chr12 29934012 29934741 -114347748 + MER21B LTR ERV1 45 809 -54 2704 146 51 11 chr12 29934795 29935324 -114347165 - L1MC1 LINE L1 -4186 2240 1691 1664 179 77 19 chr12 29935334 29935698 -114346791 - L1MC1 LINE L1 -5989 437 53 30 0 0 0 chr12 29935703 29935733 -114346756 + AT_rich Low_complexity Low_complexity 1 30 0 2374 43 0 4 chr12 29935925 29936203 -114346286 - AluY SINE Alu -7 304 28 1333 221 119 70 chr12 29936798 29937417 -114345072 + MLT1E1 LTR MaLR 1 650 -4 2170 128 0 10 chr12 29937600 29937906 -114344583 + AluSg SINE Alu 1 303 -7 2210 101 10 3 chr12 29938169 29938476 -114344013 - AluSx SINE Alu -3 309 1 1806 140 71 3 chr12 29938851 29939250 -114343239 - MER61D LTR ERV1 0 501 1 3204 147 11 20 chr12 29939251 29940034 -114342455 - MER61D-int LTR ERV1 -1 6995 3500 3087 57 23 18 chr12 29940038 29940475 -114342014 - LTR7 LTR ERV1 -11 439 1 2417 101 52 21 chr12 29940475 29940899 -114341590 - HERVH LTR ERV1 0 7713 7277 4156 127 0 21 chr12 29940916 29941054 -114341435 - HERVH LTR ERV1 -2564 5149 5010 2296 92 3 0 chr12 29941054 29941349 -114341140 - AluY SINE Alu -15 296 1 4156 127 0 21 chr12 29941349 29941885 -114340604 - HERVH LTR ERV1 -2703 5010 4489 5656 92 6 2 chr12 29941888 29942739 -114339750 - HERVH LTR ERV1 -3720 3993 3140 * 14952 109 23 41 chr12 29942733 29945770 -114336719 - HERVH LTR ERV1 -4726 2987 1 3234 72 23 20 chr12 29945778 29946220 -114336269 - LTR7 LTR ERV1 -7 443 1 11589 168 29 43 chr12 29946220 29946395 -114336094 - MER61D-int LTR ERV1 -303 4914 4738 2428 90 0 0 chr12 29946395 29946696 -114335793 + AluY SINE Alu 1 301 -10 11589 168 29 43 chr12 29946696 29950559 -114331930 - MER61D-int LTR ERV1 -479 4738 609 746 174 147 94 chr12 29950565 29950863 -114331626 - MER61D-int LTR ERV1 -4819 398 290 819 267 86 24 chr12 29950958 29951470 -114331019 - MER61D-int LTR ERV1 -2546 601 68 2007 138 82 7 chr12 29951531 29951946 -114330543 - MER61D LTR ERV1 0 501 1 1011 239 68 66 chr12 29951946 29952383 -114330106 - MLT1C LTR MaLR -29 438 1 2271 173 71 33 chr12 29952404 29952854 -114329635 + MLT1C LTR MaLR 1 467 0 279 303 38 60 chr12 29952956 29953223 -114329266 - L1ME LINE L1 -383 5738 5478 180 0 0 0 chr12 29954348 29954368 -114328121 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 24 32 0 0 chr12 29954483 29954514 -114327975 + GC_rich Low_complexity Low_complexity 1 31 0 764 195 75 25 chr12 29956873 29957032 -114325457 + MER45A DNA AcHobo 1 167 -11 277 355 32 11 chr12 29957136 29957229 -114325260 + MIR SINE MIR 66 160 -102 540 328 114 39 chr12 29958467 29959259 -114323230 - L2 LINE L2 -1 3312 2453 2193 69 33 0 chr12 29959821 29960143 -114322346 - AluY SINE Alu 0 331 1 1092 197 90 72 chr12 29960918 29961253 -114321236 + MER58B DNA MER1_type 1 341 0 1190 140 43 100 chr12 29961385 29961685 -114320804 + L1MA7 LINE L1 5887 6169 -122 30 0 0 0 chr12 29961726 29961756 -114320733 + AT_rich Low_complexity Low_complexity 1 30 0 324 180 56 67 chr12 29962116 29962205 -114320284 + MER5A DNA MER1_type 39 126 -63 366 23 0 0 chr12 29962525 29962568 -114319921 + (TA)n Simple_repeat Simple_repeat 1 43 0 299 345 101 0 chr12 29964226 29964345 -114318144 - MIR3 SINE MIR -48 160 30 343 223 78 58 chr12 29964366 29964469 -114318020 - L2 LINE L2 0 3272 3168 2072 100 65 0 chr12 29964675 29964954 -114317535 + AluY SINE Alu 1 297 -14 222 313 15 0 chr12 29965715 29965782 -114316707 + L2 LINE L2 2694 2761 -553 1812 157 66 76 chr12 29965976 29966370 -114316119 - MLT1B LTR MaLR 0 390 1 2538 246 75 33 chr12 29966540 29967726 -114314763 - L1ME3A LINE L1 0 6170 4923 464 355 91 54 chr12 29968294 29968590 -114313899 - L2 LINE L2 -3 3269 2963 478 186 31 0 chr12 29968607 29968704 -114313785 + MIR SINE MIR 75 174 -88 239 224 0 0 chr12 29968949 29968998 -114313491 + MIR3 SINE MIR 153 201 -7 464 295 107 45 chr12 29969266 29969374 -114313115 + MIR SINE MIR 25 125 -137 440 160 40 0 chr12 29969374 29969449 -114313040 - MER116 DNA Mariner -2 78 1 464 295 107 45 chr12 29969449 29969564 -114312925 + MIR SINE MIR 125 262 0 289 263 31 31 chr12 29970403 29970563 -114311926 - L1M4 LINE L1 -909 5237 5078 371 284 77 26 chr12 29971416 29971571 -114310918 + MIR SINE MIR 53 215 -47 199 331 98 84 chr12 29971919 29972529 -114309960 + L2 LINE L2 571 1189 -2125 4420 78 283 0 chr12 29973940 29974584 -114307905 - LTR12 LTR ERV1 0 826 1 5691 109 6 1 chr12 29974584 29975376 -114307113 - HERV9 LTR ERV1 0 8399 7604 2426 148 102 111 chr12 29975355 29976264 -114306225 - HERV9 LTR ERV1 -5156 1740 840 * 1431 95 0 0 chr12 29976265 29976454 -114306035 - HERV9 LTR ERV1 -3455 4944 4756 * 2302 122 108 0 chr12 29976453 29976806 -114305683 - HERV9 LTR ERV1 -5427 2972 2582 1787 175 56 38 chr12 29976814 29977679 -114304810 + SVA Other Other 432 868 -518 10868 108 9 24 chr12 29977815 29979843 -114302646 - HERV9 LTR ERV1 -5803 2596 533 2245 92 54 0 chr12 29979843 29980138 -114302351 - AluY SINE Alu 0 311 1 10868 108 9 24 chr12 29980138 29980610 -114301879 - HERV9 LTR ERV1 -7866 533 55 1871 111 159 165 chr12 29980585 29981292 -114301197 - LTR12 LTR ERV1 -133 2031 58 * 258 250 0 0 chr12 29981296 29981348 -114301141 - LTR30 LTR ERV1 -670 52 1 183 156 0 0 chr12 29983149 29983181 -114299308 - MIR SINE MIR -101 161 130 1510 167 3 70 chr12 29983734 29984034 -114298455 + AluJb SINE Alu 5 284 -28 2289 160 0 69 chr12 29984240 29984659 -114297830 - MLT1B LTR MaLR 0 390 1 251 310 93 8 chr12 29984812 29984941 -114297548 - MIR SINE MIR -12 250 111 467 17 17 0 chr12 29986140 29986200 -114296289 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 419 358 66 8 chr12 29986905 29987268 -114295221 + L2 LINE L2 1326 1709 -1605 212 86 29 0 chr12 29987346 29987381 -114295108 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 763 160 25 0 chr12 29987509 29987628 -114294861 - LTR12 LTR ERV1 -234 480 359 298 211 14 0 chr12 29987628 29987699 -114294790 - LTR30 LTR ERV1 -98 624 553 1747 76 3 170 chr12 29987700 29988042 -114294447 - LTR12 LTR ERV1 -429 285 1 810 315 129 40 chr12 29988264 29989033 -114293456 + L2 LINE L2 1709 2545 -769 339 168 29 168 chr12 29989400 29989537 -114292952 + L1MB5 LINE L1 6057 6174 0 2426 96 0 6 chr12 29989841 29990155 -114292334 - AluSx SINE Alu 0 312 1 228 288 136 60 chr12 29990155 29990332 -114292157 - L3b LINE CR1 -111 1472 1279 250 301 122 8 chr12 29990338 29990461 -114292028 + MIR SINE MIR 40 176 -86 21 57 0 0 chr12 29990976 29991011 -114291478 + AT_rich Low_complexity Low_complexity 1 35 0 184 322 0 0 chr12 29991047 29991106 -114291383 - MIR3 SINE MIR -6 202 144 396 271 90 14 chr12 29991135 29991279 -114291210 + MER20 DNA MER1_type 31 185 -34 1245 159 94 14 chr12 29991437 29991713 -114290776 - MER33 DNA MER1_type -22 302 5 2512 35 0 0 chr12 29992166 29992506 -114289983 - AluY SINE Alu 0 340 1 21 57 0 0 chr12 29992756 29992791 -114289698 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr12 29992832 29992855 -114289634 + AT_rich Low_complexity Low_complexity 1 23 0 950 192 4 96 chr12 29993181 29993410 -114289079 - MER58A DNA MER1_type -16 208 1 21 0 0 0 chr12 29993598 29993619 -114288870 + AT_rich Low_complexity Low_complexity 1 21 0 4382 196 88 63 chr12 29993897 29994163 -114288326 - L1MC3 LINE L1 -20 7765 7507 233 89 22 0 chr12 29994163 29994208 -114288281 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 4382 196 88 63 chr12 29994208 29994480 -114288009 - L1MC3 LINE L1 -278 7507 7243 276 246 0 0 chr12 29994480 29994537 -114287952 - MLT1F1 LTR MaLR -443 124 68 4382 196 88 63 chr12 29994537 29995132 -114287357 - L1MC3 LINE L1 -542 7243 6545 1532 274 23 57 chr12 29995227 29995828 -114286661 - L2 LINE L2 -659 2655 2075 24 0 0 0 chr12 29995862 29995886 -114286603 + AT_rich Low_complexity Low_complexity 1 24 0 2061 108 3 3 chr12 29995886 29996181 -114286308 - AluY SINE Alu -16 295 1 217 283 0 0 chr12 29997830 29997876 -114284613 - L2 LINE L2 -17 3296 3251 21 36 0 0 chr12 29998055 29998083 -114284406 + AT_rich Low_complexity Low_complexity 1 28 0 5588 130 10 2 chr12 29998492 29999393 -114283096 - L1MC1 LINE L1 0 6333 5426 1480 188 82 28 chr12 29999867 29999940 -114282549 - LTR52 LTR ERVL -3 418 350 351 0 0 0 chr12 29999940 29999979 -114282510 + (CA)n Simple_repeat Simple_repeat 1 39 0 1480 188 82 28 chr12 29999979 30000294 -114282195 - LTR52 LTR ERVL -71 350 9 4801 127 31 11 chr12 30001123 30001958 -114280531 - L1PB4 LINE L1 -1 6155 5304 1605 209 19 14 chr12 30001939 30002359 -114280130 + L1PB4 LINE L1 4900 5321 -825 * 549 190 120 25 chr12 30002822 30002980 -114279509 - MIR SINE MIR 0 262 90 27 49 0 0 chr12 30003077 30003118 -114279371 + AT_rich Low_complexity Low_complexity 1 41 0 2096 108 0 7 chr12 30003650 30003945 -114278544 - AluSc SINE Alu -16 293 1 288 359 78 0 chr12 30004346 30004449 -114278040 - L2 LINE L2 -35 3237 3127 227 350 157 43 chr12 30004502 30004736 -114277753 - L2 LINE L2 -397 2917 2711 2556 48 0 3 chr12 30004736 30005047 -114277442 + AluY SINE Alu 1 310 -1 227 350 157 43 chr12 30005047 30005526 -114276963 - L2 LINE L2 -603 2711 2123 520 264 181 0 chr12 30005555 30005699 -114276790 - MER91B DNA MER1_type -2 188 19 257 286 97 26 chr12 30005721 30005875 -114276614 - L2 LINE L2 -1219 2095 1931 3248 107 14 24 chr12 30005955 30006449 -114276040 + LTR22B LTR ERVK 1 489 -3 958 179 70 30 chr12 30007133 30007334 -114275155 - MER3 DNA MER1_type 0 209 1 197 322 28 63 chr12 30007507 30007650 -114274839 - MIR SINE MIR -41 221 84 2359 168 36 2 chr12 30007936 30008347 -114274142 + MSTB LTR MaLR 2 426 0 2572 51 0 3 chr12 30009136 30009447 -114273042 + AluY SINE Alu 1 310 -1 400 333 147 9 chr12 30009655 30009988 -114272501 - L2 LINE L2 -20 3293 2915 2583 120 31 14 chr12 30009994 30010411 -114272078 - MSTA LTR MaLR -4 424 1 200 284 40 27 chr12 30012282 30012356 -114270133 - MER5B DNA MER1_type 0 178 104 186 133 0 0 chr12 30013099 30013129 -114269360 + (TGGA)n Simple_repeat Simple_repeat 1 30 0 631 218 0 8 chr12 30013338 30013462 -114269027 + FLAM_C SINE Alu 1 123 -20 230 368 0 0 chr12 30014409 30014496 -114267993 - L2 LINE L2 -647 2667 2581 300 27 0 0 chr12 30015111 30015148 -114267341 + (TG)n Simple_repeat Simple_repeat 2 38 0 193 303 23 136 chr12 30015163 30015295 -114267194 + MIR3 SINE MIR 6 122 -86 1683 163 14 10 chr12 30015343 30015632 -114266857 + AluJo SINE Alu 1 290 -22 24 53 0 0 chr12 30015632 30015670 -114266819 + AT_rich Low_complexity Low_complexity 1 38 0 1848 118 44 7 chr12 30016103 30016375 -114266114 + AluSg1 SINE Alu 14 295 -14 222 37 0 0 chr12 30016425 30016452 -114266037 + (TG)n Simple_repeat Simple_repeat 1 27 0 1092 155 0 0 chr12 30016564 30016725 -114265764 + AluSg/x SINE Alu 138 298 -14 1264 192 98 31 chr12 30017137 30017473 -114265016 + MLT1C LTR MaLR 1 359 -108 291 125 0 0 chr12 30017459 30017507 -114264982 + Alu SINE Alu 252 299 -3 * 191 345 128 28 chr12 30017701 30018130 -114264359 + L2 LINE L2 1912 2383 -931 309 252 68 29 chr12 30018199 30018302 -114264187 + MIR SINE MIR 5 111 -151 2402 94 0 0 chr12 30018826 30019125 -114263364 + AluSx SINE Alu 1 299 -13 696 326 47 61 chr12 30019756 30019958 -114262531 - L2 LINE L2 0 3313 3110 2135 117 7 7 chr12 30019958 30020285 -114262204 + AluSq SINE Alu 1 313 0 696 326 47 61 chr12 30020285 30020588 -114261901 - L2 LINE L2 -203 3110 2815 27 49 0 0 chr12 30021174 30021215 -114261274 + AT_rich Low_complexity Low_complexity 1 41 0 546 288 53 60 chr12 30023046 30023403 -114259086 + L1MCc LINE L1 1179 1537 -5585 213 39 0 0 chr12 30023403 30023429 -114259060 + (GGA)n Simple_repeat Simple_repeat 2 27 0 546 288 53 60 chr12 30023429 30023493 -114258996 + L1MCc LINE L1 1537 1600 -5522 2294 88 0 10 chr12 30023493 30023789 -114258700 + AluY SINE Alu 1 293 -18 546 288 53 60 chr12 30023789 30024277 -114258212 + L1MCc LINE L1 1600 2304 -4818 1858 151 11 0 chr12 30024300 30024607 -114257882 - AluJb SINE Alu 0 310 1 183 195 322 0 chr12 30024628 30024715 -114257774 + MIR SINE MIR 138 252 -10 343 188 78 0 chr12 30024906 30024970 -114257519 + L2 LINE L2 3203 3271 -42 321 285 192 0 chr12 30025422 30025552 -114256937 - MIR3 SINE MIR -9 199 45 3386 148 41 58 chr12 30026092 30026827 -114255662 - MER50 LTR ERV1 -12 722 1 2249 102 3 7 chr12 30027274 30027567 -114254922 - AluSx SINE Alu -20 292 1 951 174 152 112 chr12 30027733 30028180 -114254309 - MER31B LTR ERV1 0 466 2 501 261 12 118 chr12 30028434 30028679 -114253810 - MIR SINE MIR -13 249 31 1549 192 0 54 chr12 30030355 30030668 -114251821 + AluJb SINE Alu 1 296 -16 554 248 102 6 chr12 30030710 30030867 -114251622 + MIR SINE MIR 91 262 0 463 290 115 37 chr12 30031377 30031594 -114250895 + MIR SINE MIR 29 262 0 1705 56 0 5 chr12 30033347 30033563 -114248926 + L1PA5 LINE L1 5940 6154 0 30 59 0 0 chr12 30033807 30033858 -114248631 + AT_rich Low_complexity Low_complexity 1 51 0 1836 178 0 0 chr12 30034002 30034306 -114248183 - AluSx SINE Alu -8 304 1 569 268 105 86 chr12 30034999 30035361 -114247128 - L2 LINE L2 -1 3312 2944 1136 276 87 83 chr12 30035391 30036326 -114246163 - L2 LINE L2 -43 3270 2310 881 343 107 22 chr12 30036327 30036974 -114245515 - L2 LINE L2 -382 2932 2231 284 328 46 23 chr12 30037008 30037139 -114245350 - L2 LINE L2 -1670 1644 1511 347 314 57 8 chr12 30037187 30037311 -114245178 - L2 LINE L2 -1 3271 3142 1069 358 160 26 chr12 30037899 30038207 -114244282 + L2 LINE L2 335 600 -2672 360 119 0 0 chr12 30038207 30038266 -114244223 + (CA)n Simple_repeat Simple_repeat 2 60 0 1069 358 160 26 chr12 30038266 30040245 -114242244 + L2 LINE L2 600 3055 -217 21 0 0 0 chr12 30040296 30040317 -114242172 + AT_rich Low_complexity Low_complexity 1 21 0 397 211 33 0 chr12 30040420 30040510 -114241979 - MIR SINE MIR 0 262 170 287 217 205 12 chr12 30040526 30040609 -114241880 + L2 LINE L2 3169 3267 -5 1558 138 54 0 chr12 30041316 30041613 -114240876 + L1MA6 LINE L1 5988 6300 0 1777 147 42 66 chr12 30041808 30042189 -114240300 - THE1C LTR MaLR -3 372 1 5768 180 66 28 chr12 30042618 30044019 -114238470 + Charlie1a DNA MER1_type 1 1454 -1 463 138 11 11 chr12 30044241 30044328 -114238161 - MLT1E1 LTR MaLR 0 654 568 783 194 156 84 chr12 30044348 30044668 -114237821 - MLT1E1 LTR MaLR -308 346 4 279 0 0 0 chr12 30044871 30044902 -114237587 + (TG)n Simple_repeat Simple_repeat 2 32 0 2279 122 3 0 chr12 30046220 30046523 -114235966 - AluSx SINE Alu -8 304 1 223 284 12 25 chr12 30046610 30046691 -114235798 + (TATG)n Simple_repeat Simple_repeat 4 83 0 226 299 158 31 chr12 30048211 30048338 -114234151 + MIR SINE MIR 11 153 -109 2634 181 25 11 chr12 30048340 30048888 -114233601 - MER89 LTR ERV1 0 559 4 309 281 0 0 chr12 30049350 30049414 -114233075 + L2 LINE L2 3186 3249 -23 261 0 0 0 chr12 30049421 30049450 -114233039 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2336 82 0 3 chr12 30050404 30050698 -114231791 - AluSc SINE Alu -16 293 1 387 280 32 48 chr12 30050706 30050831 -114231658 - MIR SINE MIR -91 171 49 238 208 19 142 chr12 30050876 30050982 -114231507 + MER5A DNA MER1_type 96 188 -1 196 382 20 10 chr12 30050982 30051079 -114231410 + L2 LINE L2 2571 2668 -646 23 54 0 0 chr12 30051479 30051516 -114230973 + AT_rich Low_complexity Low_complexity 1 37 0 8703 51 2 7 chr12 30053667 30054744 -114227745 - MER11C LTR ERVK 0 1071 1 369 352 7 28 chr12 30055318 30055460 -114227029 + MER5A DNA MER1_type 49 187 -2 188 115 250 0 chr12 30055492 30055544 -114226945 - L2 LINE L2 0 3313 3249 195 352 69 60 chr12 30055750 30055932 -114226557 - MIR SINE MIR -64 144 9 5109 180 21 5 chr12 30056231 30057201 -114225288 + ERVL-D LTR ERVL 1377 2361 -3403 5857 138 42 9 chr12 30057203 30058228 -114224261 + ERVL-D LTR ERVL 4699 5757 -7 1727 198 22 14 chr12 30058228 30058591 -114223898 + MLT2D LTR ERVL 1 366 -48 354 148 22 44 chr12 30058593 30058776 -114223713 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 378 74 0 0 chr12 30058794 30058848 -114223641 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 252 111 56 19 chr12 30058885 30058939 -114223550 + MLT2D LTR ERVL 465 520 0 242 255 39 0 chr12 30059261 30059312 -114223177 + L2 LINE L2 3212 3264 -8 600 236 31 0 chr12 30059790 30059917 -114222572 - FLAM_A SINE Alu -2 131 1 2253 98 7 3 chr12 30060088 30060385 -114222104 + AluSx SINE Alu 1 298 -14 1581 175 40 67 chr12 30060485 30060886 -114221603 - MLT1B LTR MaLR 0 390 1 1278 137 0 0 chr12 30061031 30061214 -114221275 - AluSp SINE Alu -1 312 130 2058 142 0 7 chr12 30061280 30061590 -114220899 - AluSx SINE Alu -4 308 1 1659 165 0 8 chr12 30061614 30061880 -114220609 - AluJo SINE Alu -22 290 27 4427 117 286 97 chr12 30061881 30063304 -114219185 + pTR5 LTR ERV1 745 2436 -2 2193 109 0 35 chr12 30063480 30063792 -114218697 + AluSx SINE Alu 1 301 -11 764 223 13 65 chr12 30064558 30064787 -114217702 + MER20 DNA MER1_type 2 218 -1 299 164 66 0 chr12 30065143 30065204 -114217285 + L2 LINE L2 3232 3296 -17 25 51 0 0 chr12 30065477 30065516 -114216973 + AT_rich Low_complexity Low_complexity 1 39 0 344 115 0 0 chr12 30065591 30065643 -114216846 - MADE1 DNA Mariner -26 54 3 10743 157 119 33 chr12 30065930 30067767 -114214722 + L1MA3 LINE L1 966 2644 -5080 2134 115 3 3 chr12 30067767 30068084 -114214405 + AluSp SINE Alu 1 317 0 10743 157 119 33 chr12 30068084 30069911 -114212578 + L1MA3 LINE L1 2644 4313 -3411 623 171 0 57 chr12 30069911 30070078 -114212411 + FLAM_C SINE Alu 1 160 0 10743 157 119 33 chr12 30070078 30072220 -114210269 + L1MA3 LINE L1 4313 7722 -2 910 239 32 5 chr12 30072712 30072930 -114209559 - MIR SINE MIR -2 260 37 357 237 132 53 chr12 30073264 30073454 -114209035 + L2 LINE L2 3107 3311 -2 8382 65 10 2 chr12 30074120 30075182 -114207307 - MER11C LTR ERVK 0 1071 1 634 350 103 18 chr12 30075294 30075682 -114206807 + L2 LINE L2 2848 3268 -4 738 276 67 28 chr12 30077153 30077405 -114205084 - MIR SINE MIR -2 260 3 7023 159 16 35 chr12 30077525 30078248 -114204241 - L1P3 LINE L1 -4472 1989 1254 186 71 0 0 chr12 30078248 30078276 -114204213 + (TTG)n Simple_repeat Simple_repeat 3 30 0 7023 159 16 35 chr12 30078276 30079466 -114203023 - L1P3 LINE L1 -5207 1254 56 4184 26 18 0 chr12 30079472 30079971 -114202518 - L1PA4 LINE L1 -2 6153 5646 2522 84 119 7 chr12 30079971 30080374 -114202115 + LTR7 LTR ERV1 1 448 -2 645 54 32 0 chr12 30080376 30080469 -114202020 + HERVH LTR ERV1 1 96 -7617 2674 80 120 0 chr12 30080485 30080885 -114201604 - LTR7 LTR ERV1 -2 448 1 1132 0 0 0 chr12 30080885 30081013 -114201476 - L1P1 LINE L1 -505 5650 5523 356 147 0 15 chr12 30081011 30081079 -114201410 - L1P3 LINE L1 -5806 69 3 * 363 123 0 18 chr12 30081361 30081418 -114201071 + MER5A DNA MER1_type 1 56 -133 448 308 34 7 chr12 30081433 30081579 -114200910 + MIR SINE MIR 11 160 -102 22 35 0 0 chr12 30082187 30082216 -114200273 + AT_rich Low_complexity Low_complexity 1 29 0 227 170 38 0 chr12 30082264 30082317 -114200172 + (TA)n Simple_repeat Simple_repeat 2 56 0 436 123 0 0 chr12 30082317 30082382 -114200107 + Alu SINE Alu 236 300 -10 2215 95 0 7 chr12 30082400 30082694 -114199795 - AluSg SINE Alu -18 292 1 337 265 8 98 chr12 30082823 30082955 -114199534 - L2 LINE L2 -13 3259 3140 1838 187 13 0 chr12 30083342 30083647 -114198842 - AluJo SINE Alu -1 311 3 34 72 0 0 chr12 30083647 30083716 -114198773 + AT_rich Low_complexity Low_complexity 1 69 0 1462 190 3 39 chr12 30083761 30084066 -114198423 - AluJo SINE Alu -18 294 1 294 330 10 0 chr12 30085202 30085305 -114197184 + MIR SINE MIR 87 190 -72 2270 108 0 0 chr12 30085347 30085643 -114196846 - AluSx SINE Alu -16 296 1 882 262 99 30 chr12 30085988 30086381 -114196108 - MLT1J1 LTR MaLR -24 422 3 338 296 12 0 chr12 30087190 30087271 -114195218 - L2 LINE L2 0 3272 3191 454 237 105 18 chr12 30088467 30088686 -114193803 + L1ME4a LINE L1 5685 5922 -199 2482 32 0 0 chr12 30090250 30090559 -114191930 - AluY SINE Alu 0 309 1 413 79 0 16 chr12 30090945 30091008 -114191481 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 2163 106 14 0 chr12 30091057 30091339 -114191150 + AluSc SINE Alu 1 286 -23 410 36 18 0 chr12 30091471 30091527 -114190962 + (CA)n Simple_repeat Simple_repeat 2 58 0 212 367 143 23 chr12 30091676 30091809 -114190680 - MIR3 SINE MIR -113 95 2 352 282 19 39 chr12 30092396 30092499 -114189990 - MIR SINE MIR -88 120 20 306 322 40 51 chr12 30092507 30092684 -114189805 + MER5B DNA MER1_type 1 175 -3 6705 124 11 5 chr12 30094350 30095582 -114186907 + L1MA1 LINE L1 4384 5631 -671 2217 144 0 0 chr12 30095582 30095887 -114186602 + AluSx SINE Alu 1 305 -7 6705 124 11 5 chr12 30095887 30096562 -114185927 + L1MA1 LINE L1 5631 6301 -1 412 278 97 23 chr12 30096672 30096848 -114185641 + MER5A DNA MER1_type 1 189 0 460 311 28 28 chr12 30096941 30097118 -114185371 - MER5A DNA MER1_type -6 183 7 1356 152 0 5 chr12 30098381 30098585 -114183904 - AluJb SINE Alu -109 203 1 1167 287 80 39 chr12 30098986 30099736 -114182753 - L1ME4a LINE L1 -54 6067 5287 2339 80 7 7 chr12 30099769 30100068 -114182421 - AluSq SINE Alu -14 299 1 2277 85 3 3 chr12 30100497 30100792 -114181697 - AluSq SINE Alu -18 295 1 232 235 84 50 chr12 30100912 30101031 -114181458 - L1 LINE L1 -1523 4623 4501 2900 3 0 0 chr12 30101175 30101486 -114181003 - AluYb8 SINE Alu -7 311 1 232 332 52 26 chr12 30101561 30101754 -114180735 - L1 LINE L1 -1908 4238 4041 198 286 24 60 chr12 30101989 30102073 -114180416 + L2 LINE L2 2596 2676 -638 571 269 142 10 chr12 30102938 30103135 -114179354 + MIR SINE MIR 4 226 -36 1875 81 101 68 chr12 30103182 30103478 -114179011 + AluSq SINE Alu 1 306 -7 27 49 0 0 chr12 30103788 30103829 -114178660 + AT_rich Low_complexity Low_complexity 1 41 0 2293 115 6 3 chr12 30104350 30104662 -114177827 + AluSq SINE Alu 1 313 0 237 327 128 48 chr12 30105114 30105472 -114177017 + L2 LINE L2 2826 3212 -60 270 0 0 0 chr12 30106048 30106078 -114176411 + (TTG)n Simple_repeat Simple_repeat 2 31 0 227 340 150 14 chr12 30107127 30107274 -114175215 - MIR SINE MIR -15 247 81 2425 68 10 7 chr12 30107371 30107680 -114174809 + AluY SINE Alu 2 311 0 197 363 47 18 chr12 30107894 30108065 -114174424 - L2 LINE L2 -398 2916 2741 281 320 96 37 chr12 30108549 30108727 -114173762 - MER5A DNA MER1_type -1 188 2 217 239 87 87 chr12 30109762 30109854 -114172635 - L2 LINE L2 -66 3206 3115 1902 161 13 13 chr12 30110546 30110856 -114171633 - AluJo SINE Alu -2 310 1 330 87 0 0 chr12 30112807 30112853 -114169636 + (CCTA)n Simple_repeat Simple_repeat 2 47 0 357 43 0 0 chr12 30114092 30114139 -114168350 + (CA)n Simple_repeat Simple_repeat 2 48 0 195 42 0 0 chr12 30114138 30114162 -114168327 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 252 0 0 0 chr12 30117085 30117113 -114165376 + (CA)n Simple_repeat Simple_repeat 1 28 0 210 273 30 15 chr12 30117948 30118014 -114164475 - MER5A DNA MER1_type -95 94 28 203 263 26 26 chr12 30117955 30118031 -114164458 + MER5A DNA MER1_type 114 189 0 * 333 293 0 0 chr12 30118779 30118878 -114163611 - L1M4 LINE L1 -2305 3841 3743 685 294 151 12 chr12 30118887 30119571 -114162918 - L1M4 LINE L1 -2535 3611 2833 211 341 35 24 chr12 30119605 30119690 -114162799 + MIR SINE MIR 1 86 -176 218 254 127 0 chr12 30119699 30119770 -114162719 - L2 LINE L2 -44 3269 3190 491 299 67 46 chr12 30119790 30119984 -114162505 + MIR SINE MIR 63 260 -2 331 318 23 53 chr12 30120155 30120287 -114162202 + L2 LINE L2 3144 3271 -1 1938 263 105 41 chr12 30120348 30121355 -114161134 - L2 LINE L2 0 3313 2256 2247 123 8 19 chr12 30122550 30122915 -114159574 + MER46B DNA MER2_type 1 236 0 286 317 121 18 chr12 30123109 30123333 -114159156 - MIR SINE MIR -1 261 15 449 290 86 108 chr12 30124107 30124397 -114158092 - L1MC/D LINE L1 -2002 5806 5530 2366 103 0 0 chr12 30124397 30124709 -114157780 - AluSx SINE Alu 0 312 1 449 290 86 108 chr12 30124709 30124929 -114157560 - L1MC/D LINE L1 -2278 5530 5307 517 315 36 12 chr12 30125045 30125210 -114157279 + MIR SINE MIR 5 173 -89 1784 159 3 20 chr12 30125338 30125639 -114156850 + AluJb SINE Alu 1 296 -16 239 189 261 72 chr12 30126085 30126196 -114156293 + MIR SINE MIR 76 207 -55 382 119 10 10 chr12 30126662 30126856 -114155633 + AluJb SINE Alu 1 291 -11 2047 52 0 0 chr12 30128231 30128482 -114154007 - L1PA4 LINE L1 -5875 271 21 * 41522 38 4 2 chr12 30128480 30134326 -114148163 + L1PA4 LINE L1 296 6155 0 2219 110 0 0 chr12 30135475 30135775 -114146714 - AluSx SINE Alu -12 300 1 23 0 0 0 chr12 30136383 30136406 -114146083 + AT_rich Low_complexity Low_complexity 1 23 0 222 163 47 0 chr12 30136421 30136464 -114146025 - L2 LINE L2 0 3313 3269 203 302 19 0 chr12 30138156 30138209 -114144280 - L2 LINE L2 -6 3307 3254 496 264 42 61 chr12 30138229 30138441 -114144048 - MIR SINE MIR -6 256 49 22 35 0 0 chr12 30141008 30141037 -114141452 + AT_rich Low_complexity Low_complexity 1 29 0 2267 97 0 10 chr12 30143312 30143611 -114138878 + AluSc SINE Alu 3 298 -11 22 0 0 0 chr12 30143685 30143707 -114138782 + AT_rich Low_complexity Low_complexity 1 22 0 1483 217 10 13 chr12 30143782 30144081 -114138408 + AluJo SINE Alu 2 299 -13 21 0 0 0 chr12 30146506 30146527 -114135962 + AT_rich Low_complexity Low_complexity 1 21 0 207 146 0 0 chr12 30146754 30146795 -114135694 + (TC)n Simple_repeat Simple_repeat 2 42 0 1809 140 3 20 chr12 30146798 30147091 -114135398 - AluJo SINE Alu -24 288 1 1990 124 14 7 chr12 30147441 30147732 -114134757 - AluSx SINE Alu -19 293 1 345 357 48 29 chr12 30148127 30148337 -114134152 - MIR SINE MIR -44 218 5 1186 256 115 19 chr12 30149475 30149885 -114132604 - L1MC4a LINE L1 -1924 5884 5436 510 209 0 0 chr12 30151050 30151141 -114131348 + AluJ/FLAM SINE Alu 1 91 -221 1492 163 0 4 chr12 30151145 30151385 -114131104 + AluJo SINE Alu 64 302 -10 2138 126 3 7 chr12 30151599 30151908 -114130581 - AluJb SINE Alu -4 308 1 482 282 23 0 chr12 30152320 30152451 -114130038 - MIR SINE MIR -98 164 31 258 263 0 18 chr12 30152983 30153040 -114129449 + L2 LINE L2 3143 3198 -74 7802 199 116 30 chr12 30155667 30157801 -114124688 - Cheshire DNA MER1_type -2 2418 83 2327 101 0 3 chr12 30157801 30158109 -114124380 + AluSx SINE Alu 3 309 -3 7802 199 116 30 chr12 30158109 30158200 -114124289 - Cheshire DNA MER1_type -2337 83 1 902 165 96 74 chr12 30158833 30159063 -114123426 - MER46A DNA MER2_type 0 236 2 23 33 0 0 chr12 30159212 30159242 -114123247 + AT_rich Low_complexity Low_complexity 1 30 0 2200 212 82 25 chr12 30159396 30159967 -114122522 + MER20B DNA MER1_type 42 645 -138 21 0 0 0 chr12 30160668 30160689 -114121800 + AT_rich Low_complexity Low_complexity 1 21 0 382 240 29 29 chr12 30160790 30160894 -114121595 + L2 LINE L2 3210 3313 0 2105 100 10 3 chr12 30161446 30161735 -114120754 - AluSq SINE Alu -17 296 6 2107 120 3 10 chr12 30162387 30162688 -114119801 - AluSx SINE Alu -13 299 1 1505 164 87 19 chr12 30163798 30164108 -114118381 + L1MC1 LINE L1 5990 6320 -13 629 306 123 13 chr12 30165360 30165817 -114116672 + L1ME4a LINE L1 5315 5821 -1987 406 183 39 44 chr12 30165856 30166036 -114116453 + (TA)n Simple_repeat Simple_repeat 2 180 0 327 193 28 150 chr12 30166086 30166232 -114116257 + L1ME4a LINE L1 5931 6045 -76 1055 111 115 69 chr12 30166232 30166383 -114116106 + MER30 DNA MER1_type 4 169 -61 2040 124 3 17 chr12 30166383 30166682 -114115807 + AluSx SINE Alu 1 295 -17 1055 111 115 69 chr12 30166682 30166747 -114115742 + MER30 DNA MER1_type 169 230 0 327 193 28 150 chr12 30166747 30166813 -114115676 + L1ME4a LINE L1 6045 6117 -4 1750 114 25 85 chr12 30167712 30168028 -114114461 + AluSq SINE Alu 1 297 -16 304 324 88 11 chr12 30168440 30168622 -114113867 - MIR SINE MIR -46 216 21 41 66 0 0 chr12 30168785 30168861 -114113628 + AT_rich Low_complexity Low_complexity 1 76 0 26 30 0 0 chr12 30168971 30169004 -114113485 + AT_rich Low_complexity Low_complexity 1 33 0 5347 126 22 14 chr12 30169691 30171040 -114111449 + L1PA16 LINE L1 4807 6160 -6 212 220 9 64 chr12 30171058 30171167 -114111322 + A-rich Low_complexity Low_complexity 5 107 0 310 171 0 71 chr12 30174750 30174820 -114107669 - MIR SINE MIR -69 139 75 * 436 247 65 58 chr12 30174811 30174965 -114107524 - MIR SINE MIR -51 211 57 21 57 0 0 chr12 30176050 30176085 -114106404 + AT_rich Low_complexity Low_complexity 1 35 0 515 221 97 32 chr12 30176536 30176690 -114105799 - MIR SINE MIR -32 230 67 23 86 0 0 chr12 30177354 30177412 -114105077 + AT_rich Low_complexity Low_complexity 1 58 0 2109 123 0 19 chr12 30177476 30177818 -114104671 + AluSx SINE Alu 1 312 0 195 42 0 0 chr12 30177851 30177875 -114104614 + (GAA)n Simple_repeat Simple_repeat 3 26 0 361 283 176 61 chr12 30177915 30178073 -114104416 + L1ME4a LINE L1 5640 5778 -343 1964 137 0 20 chr12 30178073 30178379 -114104110 - AluJb SINE Alu -12 300 1 361 283 176 61 chr12 30178379 30178549 -114103940 + L1ME4a LINE L1 5778 6006 -115 703 325 166 37 chr12 30179391 30180772 -114101717 + L2 LINE L2 1630 3223 -49 249 245 196 0 chr12 30180880 30180982 -114101507 + L2 LINE L2 3192 3313 0 588 265 43 57 chr12 30181529 30181740 -114100749 - MIR SINE MIR -32 230 23 1986 133 26 48 chr12 30182726 30183078 -114099411 + MER2 DNA MER2_type 1 344 0 263 333 68 23 chr12 30183165 30183297 -114099192 - L3 LINE CR1 -1074 503 366 1829 200 71 12 chr12 30183446 30183856 -114098633 + MLT1C LTR MaLR 34 467 0 224 222 96 96 chr12 30184213 30184348 -114098141 + MIR SINE MIR 71 205 -57 888 225 53 0 chr12 30185005 30185192 -114097297 - MIR SINE MIR 0 262 66 21 0 0 0 chr12 30185472 30185493 -114096996 + AT_rich Low_complexity Low_complexity 1 21 0 356 302 78 0 chr12 30187414 30187530 -114094959 - MIR SINE MIR -78 184 60 910 217 49 15 chr12 30187751 30187954 -114094535 + MIR SINE MIR 3 212 -50 1108 78 0 0 chr12 30188222 30188364 -114094125 - HERV9 LTR ERV1 -6416 1983 1842 15770 100 15 8 chr12 30188540 30191002 -114091487 - HERV9 LTR ERV1 -1935 503 2 364 204 31 20 chr12 30191005 30191103 -114091386 - LTR30 LTR ERV1 -80 642 544 4967 124 65 74 chr12 30191103 30192226 -114090263 - pTR5 LTR ERV1 -413 2025 741 1757 142 45 7 chr12 30192433 30192595 -114089894 - AluSx SINE Alu -10 302 123 423 0 0 0 chr12 30192595 30192642 -114089847 + (TG)n Simple_repeat Simple_repeat 2 48 0 1757 142 45 7 chr12 30192642 30192768 -114089721 - AluSx SINE Alu -189 123 3 1947 129 10 20 chr12 30193100 30193395 -114089094 - AluSx SINE Alu -20 292 1 377 289 70 7 chr12 30193415 30193557 -114088932 + Tigger8 DNA MER2_type 83 233 -433 290 282 26 122 chr12 30193611 30193767 -114088722 - L2 LINE L2 -3 3310 3170 22 0 0 0 chr12 30194476 30194498 -114087991 + AT_rich Low_complexity Low_complexity 1 22 0 15214 161 62 39 chr12 30194702 30198335 -114084154 - MER109 Unknown Unknown 0 2432 796 2357 86 0 0 chr12 30198335 30198625 -114083864 + AluSc SINE Alu 1 290 -19 15214 161 62 39 chr12 30198625 30199440 -114083049 - MER109 Unknown Unknown -1636 796 1 424 228 70 0 chr12 30200905 30201019 -114081470 + MLT1F1 LTR MaLR 156 277 -290 600 298 68 10 chr12 30201021 30201313 -114081176 - HAL1 LINE L1 -971 1536 1228 2262 111 0 7 chr12 30201466 30201772 -114080717 + AluSq SINE Alu 1 304 -9 524 270 55 59 chr12 30201914 30202151 -114080338 + MLT1J LTR MaLR 226 461 -50 468 311 128 5 chr12 30202412 30202608 -114079881 + MIR SINE MIR 2 221 -41 424 233 132 13 chr12 30202935 30203206 -114079283 - L1MB8 LINE L1 -5 6161 5835 2135 102 3 20 chr12 30203210 30203515 -114078974 - AluSx SINE Alu -10 302 3 834 289 45 4 chr12 30203642 30203884 -114078605 - MIR SINE MIR -1 261 10 312 277 181 46 chr12 30204445 30204683 -114077806 - L1ME3 LINE L1 -211 5951 5682 280 180 0 49 chr12 30204723 30204784 -114077705 + MER5B DNA MER1_type 8 65 -113 429 284 31 21 chr12 30204825 30205018 -114077471 - L1ME3 LINE L1 -519 5651 5461 2405 90 0 0 chr12 30205104 30205414 -114077075 - AluY SINE Alu -1 310 1 399 274 204 22 chr12 30205511 30205781 -114076708 + Tigger8 DNA MER2_type 206 524 -142 189 200 20 40 chr12 30206132 30206182 -114076307 + L2 LINE L2 3265 3313 0 2119 94 63 0 chr12 30206307 30206594 -114075895 + AluSg SINE Alu 1 305 -5 3370 120 93 9 chr12 30206888 30207469 -114075020 + MER39B LTR ERV1 5 621 -1 286 303 12 47 chr12 30207868 30208089 -114074400 + GA-rich Low_complexity Low_complexity 1 213 0 304 319 6 35 chr12 30208140 30208309 -114074180 + GA-rich Low_complexity Low_complexity 3 166 0 299 213 40 0 chr12 30208598 30208673 -114073816 + MER116 DNA Mariner 1 78 -2 2201 119 0 3 chr12 30210159 30210470 -114072019 + AluSg SINE Alu 1 310 0 280 229 0 0 chr12 30210480 30210541 -114071948 - MER116 DNA Mariner -16 64 4 43772 39 2 4 chr12 30211729 30217891 -114064598 - L1PA3 LINE L1 -1 6154 2 1215 231 7 50 chr12 30218279 30218578 -114063911 - AluJo SINE Alu -25 287 2 21 57 0 0 chr12 30218918 30218953 -114063536 + AT_rich Low_complexity Low_complexity 1 35 0 240 35 0 0 chr12 30219080 30219109 -114063380 + (CA)n Simple_repeat Simple_repeat 2 30 0 2082 97 17 21 chr12 30219439 30219729 -114062760 - AluSx SINE Alu -8 304 16 331 258 148 62 chr12 30219799 30220055 -114062434 - L1ME LINE L1 -315 5806 5529 312 288 29 14 chr12 30220059 30220198 -114062291 + L1ME LINE L1 5574 5714 -407 24 0 0 0 chr12 30220262 30220286 -114062203 + AT_rich Low_complexity Low_complexity 1 24 0 284 273 0 0 chr12 30220828 30220894 -114061595 - MER5B DNA MER1_type -1 177 112 4214 197 85 55 chr12 30220894 30222620 -114059869 + L1MD1 LINE L1 4282 6072 -170 2019 92 7 35 chr12 30222620 30222903 -114059586 + AluSx SINE Alu 32 306 -6 4214 197 85 55 chr12 30222903 30223074 -114059415 + L1MD1 LINE L1 6072 6236 -6 357 300 58 0 chr12 30223109 30223179 -114059310 - MER5B DNA MER1_type -51 127 46 384 40 0 0 chr12 30223179 30223229 -114059260 + (TG)n Simple_repeat Simple_repeat 2 51 0 357 300 58 0 chr12 30223229 30223278 -114059211 - MER5B DNA MER1_type -132 46 1 408 284 42 0 chr12 30223544 30223639 -114058850 - MIR SINE MIR -103 159 61 1370 214 13 23 chr12 30224270 30224574 -114057915 - AluJo SINE Alu -9 303 3 2313 83 0 23 chr12 30224712 30225012 -114057477 - AluY SINE Alu -18 293 1 224 139 0 0 chr12 30225816 30225852 -114056637 - MIR SINE MIR -109 153 118 2916 3 3 0 chr12 30225917 30226234 -114056255 - AluYb8 SINE Alu 0 318 1 3530 97 24 8 chr12 30229382 30229885 -114052604 - MER9 LTR ERVK 0 511 1 608 225 80 14 chr12 30229999 30230137 -114052352 + MIR SINE MIR 6 152 -110 407 236 195 16 chr12 30230149 30230272 -114052217 + MIR SINE MIR 67 211 -51 989 333 75 30 chr12 30230298 30230763 -114051726 + L3 LINE CR1 245 730 -847 561 267 85 49 chr12 30230958 30231205 -114051284 + MIR SINE MIR 7 262 0 375 240 221 26 chr12 30231237 30231391 -114051098 - L3 LINE CR1 -296 1281 1098 243 294 130 20 chr12 30231546 30231692 -114050797 + L2 LINE L2 832 993 -2321 * 365 219 163 56 chr12 30231681 30231841 -114050648 - L2 LINE L2 -1523 1791 1615 603 303 117 9 chr12 30231862 30232212 -114050277 + L2 LINE L2 2224 2611 -703 800 146 116 18 chr12 30232215 30232379 -114050110 + MER3 DNA MER1_type 8 187 -22 281 324 62 44 chr12 30232441 30232666 -114049823 + L2 LINE L2 2717 2945 -369 434 344 31 5 chr12 30232684 30232879 -114049610 - L2 LINE L2 -33 3280 3081 1073 170 18 26 chr12 30232908 30233132 -114049357 + MLT1A1 LTR MaLR 169 353 -12 1913 242 123 2 chr12 30233409 30233922 -114048567 + MER90 LTR ERV1 1 575 0 321 227 15 0 chr12 30234391 30234457 -114048032 + tRNA-Ala-GCG tRNA tRNA 6 72 -3 2654 206 62 6 chr12 30235695 30236380 -114046109 - L1PBa LINE L1 -5700 1163 398 234 250 164 51 chr12 30236489 30236577 -114045912 - L1ME4a LINE L1 -2 6119 6042 1729 164 18 11 chr12 30236577 30236863 -114045626 + AluJo SINE Alu 5 292 -20 234 250 164 51 chr12 30236863 30237086 -114045403 - L1ME4a LINE L1 -79 6042 5773 2388 268 186 24 chr12 30237475 30238482 -114044007 - L2 LINE L2 -387 2927 1758 445 261 128 28 chr12 30238504 30238584 -114043905 + L2 LINE L2 3045 3116 -197 2533 121 3 3 chr12 30238584 30238948 -114043541 + THE1B LTR MaLR 1 364 0 445 261 128 28 chr12 30238948 30239078 -114043411 + L2 LINE L2 3116 3276 -37 21 0 0 0 chr12 30239817 30239838 -114042651 + AT_rich Low_complexity Low_complexity 1 21 0 941 174 19 0 chr12 30240629 30240790 -114041699 + FAM SINE Alu 1 164 -11 2283 54 43 0 chr12 30240794 30241070 -114041419 - AluY SINE Alu -21 290 3 315 287 150 40 chr12 30241455 30241702 -114040787 - L1ME4a LINE L1 -217 5904 5631 5703 72 82 1 chr12 30241928 30242692 -114039797 - LTR12 LTR ERV1 0 826 1 352 282 104 91 chr12 30243656 30244205 -114038284 - L1ME4a LINE L1 -1293 4853 4298 1090 161 49 124 chr12 30244437 30244823 -114037666 + MER34B LTR ERV1 145 501 -64 249 39 39 39 chr12 30244870 30244922 -114037567 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 2607 209 50 15 chr12 30245023 30245565 -114036924 - MER21B LTR ERV1 -125 738 178 237 258 32 32 chr12 30246448 30246510 -114035979 - MIR SINE MIR -64 144 83 7619 26 1 0 chr12 30246565 30248050 -114034439 + L1PA3 LINE L1 4668 6152 -3 22 35 0 0 chr12 30248050 30248079 -114034410 + AT_rich Low_complexity Low_complexity 1 29 0 234 311 99 31 chr12 30250905 30251066 -114031423 - MIR SINE MIR -89 173 2 624 302 46 35 chr12 30251399 30251684 -114030805 + L2 LINE L2 3021 3308 -5 541 197 82 0 chr12 30252602 30252724 -114029765 + FLAM_C SINE Alu 2 133 0 271 182 36 0 chr12 30252965 30253020 -114029469 - L2 LINE L2 -67 3246 3190 583 276 98 66 chr12 30253279 30253448 -114029041 - L2 LINE L2 -18 3295 3133 1812 154 77 3 chr12 30253448 30253759 -114028730 - MER1B DNA MER1_type -3 334 1 583 276 98 66 chr12 30253759 30253955 -114028534 - L2 LINE L2 -180 3133 2918 396 0 0 0 chr12 30254695 30254739 -114027750 + (CA)n Simple_repeat Simple_repeat 2 45 0 2092 88 33 0 chr12 30254797 30255102 -114027387 - L1PA7 LINE L1 -1510 4636 4322 6938 65 0 0 chr12 30255102 30256607 -114025882 + L1PA7 LINE L1 4661 6164 0 218 253 12 60 chr12 30258466 30258549 -114023940 - MIR SINE MIR -7 255 177 2531 261 109 26 chr12 30258709 30259665 -114022824 + L2 LINE L2 597 1631 -1683 308 363 29 23 chr12 30261515 30261686 -114020803 - MIR3 SINE MIR -32 176 5 279 299 103 34 chr12 30262109 30262226 -114020263 + L2 LINE L2 3134 3258 -14 181 355 140 0 chr12 30262714 30262807 -114019682 + L2 LINE L2 3204 3309 -4 2360 93 0 6 chr12 30262808 30263121 -114019368 - AluY SINE Alu 0 311 1 24 0 0 0 chr12 30263128 30263152 -114019337 + AT_rich Low_complexity Low_complexity 1 24 0 357 379 39 0 chr12 30263307 30263460 -114019029 - L2 LINE L2 -283 3030 2872 6703 126 23 9 chr12 30263519 30265200 -114017289 + L1MA3 LINE L1 4600 6305 0 1012 274 66 42 chr12 30265882 30266291 -114016198 + LTR16C LTR ERVL 73 491 0 227 200 0 0 chr12 30267773 30267823 -114014666 + (TA)n Simple_repeat Simple_repeat 1 50 0 393 345 83 49 chr12 30268503 30269020 -114013469 - L2 LINE L2 -11 3261 2728 * 454 303 84 0 chr12 30269002 30269157 -114013332 + MIR SINE MIR 18 185 -77 1163 223 91 22 chr12 30269392 30269710 -114012779 + MER58B DNA MER1_type 1 340 -1 900 158 54 124 chr12 30270681 30270979 -114011510 - THE1C LTR MaLR 0 375 99 3470 47 0 0 chr12 30271247 30271671 -114010818 + L1PA5 LINE L1 5724 6147 -7 21 36 0 0 chr12 30271752 30271780 -114010709 + AT_rich Low_complexity Low_complexity 1 28 0 719 184 42 30 chr12 30271950 30272118 -114010371 + L1ME3A LINE L1 5929 6098 -72 296 175 475 0 chr12 30273204 30273284 -114009205 + MER5A DNA MER1_type 69 186 -3 1639 188 86 21 chr12 30274101 30274899 -114007590 + L1MC3 LINE L1 6492 7542 -243 240 363 30 22 chr12 30274900 30275020 -114007469 - L2 LINE L2 -365 2949 2826 1519 162 48 7 chr12 30275020 30275291 -114007198 + AluJo SINE Alu 5 286 -26 240 363 30 22 chr12 30275291 30275305 -114007184 - L2 LINE L2 -488 2826 2814 361 206 82 31 chr12 30275315 30275412 -114007077 - MER5B DNA MER1_type -1 177 76 233 248 91 8 chr12 30275418 30275539 -114006950 + L1ME4a LINE L1 5821 5951 -219 6564 65 18 8 chr12 30275628 30276507 -114005982 - L1PA8 LINE L1 0 6172 5285 263 360 220 19 chr12 30276769 30277141 -114005348 + L3 LINE CR1 1092 1538 -39 580 217 14 58 chr12 30277619 30277757 -114004732 - L2 LINE L2 0 3313 3182 371 335 77 37 chr12 30278869 30279106 -114003383 + L2 LINE L2 2214 2465 -849 2932 75 75 2 chr12 30279106 30279479 -114003010 + MLT2A1 LTR ERVL 1 408 -36 384 22 0 0 chr12 30279479 30279524 -114002965 + (CA)n Simple_repeat Simple_repeat 2 46 0 2932 75 75 2 chr12 30279524 30279564 -114002925 + MLT2A1 LTR ERVL 408 444 0 371 335 77 37 chr12 30279564 30279598 -114002891 + L2 LINE L2 2465 2496 -818 654 294 65 0 chr12 30279699 30279913 -114002576 + MIR SINE MIR 30 257 -5 374 229 38 46 chr12 30280265 30280396 -114002093 - MER5A DNA MER1_type -28 161 32 593 316 109 0 chr12 30281832 30282145 -114000344 + L1MC4a LINE L1 5539 5885 -1923 504 48 0 0 chr12 30282163 30282226 -114000263 + (CA)n Simple_repeat Simple_repeat 2 64 0 222 364 84 18 chr12 30282990 30283215 -113999274 + L2 LINE L2 2866 3105 -167 366 272 59 22 chr12 30283699 30283835 -113998654 + L1ME4a LINE L1 5975 6115 -6 23 54 0 0 chr12 30284059 30284096 -113998393 + AT_rich Low_complexity Low_complexity 1 37 0 525 42 14 0 chr12 30284096 30284167 -113998322 - MER41B LTR ERV1 -83 552 481 2363 108 0 0 chr12 30285234 30285540 -113996949 - AluSg SINE Alu -4 306 1 263 220 130 10 chr12 30285877 30285977 -113996512 + MER117 DNA MER1_type 5 116 -81 304 212 45 15 chr12 30285996 30286062 -113996427 - L2 LINE L2 0 3313 3246 338 174 81 12 chr12 30286319 30286405 -113996084 + HsTC2 DNA Tc2 11 102 -1796 312 382 109 26 chr12 30286405 30286672 -113995817 - L1MEd LINE L1 -5473 646 358 1075 311 124 31 chr12 30287168 30288036 -113994453 + L2 LINE L2 2358 3303 -10 849 332 88 18 chr12 30288296 30288865 -113993624 - L3 LINE CR1 -112 1465 857 647 197 0 0 chr12 30289934 30290051 -113992438 + FLAM_A SINE Alu 8 124 -18 914 146 251 18 chr12 30290541 30290760 -113991729 + AluSg1 SINE Alu 35 304 -5 2096 92 0 37 chr12 30290771 30290912 -113991577 + AluSx SINE Alu 1 146 -210 2251 60 7 20 chr12 30290912 30291212 -113991277 + AluY SINE Alu 2 297 -14 2096 92 0 37 chr12 30291212 30291437 -113991052 + AluSx SINE Alu 146 356 0 2158 107 10 13 chr12 30293755 30294065 -113988424 + AluSx SINE Alu 1 309 -3 1538 181 47 0 chr12 30295492 30295649 -113986840 - AluJo SINE Alu -23 289 112 230 0 33 0 chr12 30295649 30295679 -113986810 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1538 181 47 0 chr12 30295679 30295797 -113986692 - AluJo SINE Alu -200 112 1 25 0 0 0 chr12 30295797 30295822 -113986667 + AT_rich Low_complexity Low_complexity 1 25 0 1631 180 60 0 chr12 30295837 30296187 -113986302 - L1MA9 LINE L1 -4 6308 5938 235 292 88 15 chr12 30297170 30297307 -113985182 + HAL1 LINE L1 1399 1545 -962 764 282 70 70 chr12 30297318 30298045 -113984444 - L2 LINE L2 -33 3280 2557 1276 255 87 58 chr12 30298074 30298612 -113983877 - L2 LINE L2 -1024 2290 1737 246 246 167 7 chr12 30298638 30298776 -113983713 - HAL1 LINE L1 -944 1563 1404 658 291 134 26 chr12 30298816 30299531 -113982958 - L1MEd LINE L1 -4873 1246 425 1764 198 166 8 chr12 30299972 30300471 -113982018 + L1MA5 LINE L1 5722 6299 -1 1680 167 34 3 chr12 30302406 30302700 -113979789 + AluJb SINE Alu 1 303 -9 423 190 13 0 chr12 30304209 30304288 -113978201 - MER3 DNA MER1_type -129 80 1 2293 94 3 10 chr12 30305083 30305392 -113977097 + AluSx SINE Alu 1 307 -5 235 308 127 59 chr12 30305624 30306050 -113976439 - L2 LINE L2 -1515 1799 1345 23 78 0 0 chr12 30306257 30306308 -113976181 + AT_rich Low_complexity Low_complexity 1 51 0 267 247 0 82 chr12 30306878 30306951 -113975538 - MIR SINE MIR -105 103 37 280 160 0 38 chr12 30308204 30308323 -113974166 + MER5B DNA MER1_type 2 177 -1 593 178 129 61 chr12 30309142 30309219 -113973270 - MER45A DNA AcHobo -1403 178 108 1935 158 0 26 chr12 30309219 30309530 -113972959 + AluJb SINE Alu 1 303 -9 593 178 129 61 chr12 30309530 30309615 -113972874 - MER45A DNA AcHobo -1473 108 5 201 258 48 0 chr12 30309990 30310052 -113972437 + GA-rich Low_complexity Low_complexity 2 66 0 23 54 0 0 chr12 30311016 30311053 -113971436 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr12 30311103 30311130 -113971359 + AT_rich Low_complexity Low_complexity 1 27 0 1882 118 0 15 chr12 30314023 30314295 -113968194 - AluSx SINE Alu -44 268 1 21 0 0 0 chr12 30314304 30314325 -113968164 + AT_rich Low_complexity Low_complexity 1 21 0 967 179 38 0 chr12 30314405 30314589 -113967900 - MER3 DNA MER1_type -16 193 3 313 253 0 0 chr12 30315070 30315149 -113967340 + MER116 DNA Mariner 1 79 -1 1740 193 14 28 chr12 30315451 30315804 -113966685 - MER7A DNA MER2_type 0 346 1 21 0 0 0 chr12 30315833 30315854 -113966635 + AT_rich Low_complexity Low_complexity 1 21 0 790 270 103 11 chr12 30316181 30316607 -113965882 + L2 LINE L2 2684 3156 -157 207 279 16 0 chr12 30316609 30316670 -113965819 + (TATG)n Simple_repeat Simple_repeat 2 63 0 412 270 70 17 chr12 30316727 30316842 -113965647 + L2 LINE L2 3180 3300 -13 219 69 0 0 chr12 30316844 30316873 -113965616 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 186 43 0 0 chr12 30316972 30316995 -113965494 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 305 313 77 34 chr12 30317912 30318145 -113964344 - L3 LINE CR1 -30 1547 1218 540 287 25 6 chr12 30318532 30318689 -113963800 + MIR SINE MIR 47 206 -56 180 176 0 0 chr12 30318741 30318775 -113963714 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 1663 171 21 7 chr12 30320154 30320435 -113962054 + AluJb SINE Alu 1 285 -27 401 311 43 102 chr12 30320800 30321260 -113961229 + L2 LINE L2 2832 3264 -8 191 235 39 20 chr12 30321383 30321434 -113961055 - MIR SINE MIR -62 200 149 544 152 22 219 chr12 30322311 30322667 -113959822 + L1MC4 LINE L1 7757 8042 0 2301 105 3 0 chr12 30323136 30323432 -113959057 - AluSx SINE Alu -15 297 1 23 0 0 0 chr12 30324271 30324294 -113958195 + AT_rich Low_complexity Low_complexity 1 23 0 229 377 9 9 chr12 30324743 30324849 -113957640 - MIR SINE MIR -116 146 41 26 0 0 0 chr12 30325737 30325763 -113956726 + AT_rich Low_complexity Low_complexity 1 26 0 2191 134 0 6 chr12 30326971 30327285 -113955204 - AluSx SINE Alu 0 312 1 297 0 0 0 chr12 30327972 30328005 -113954484 + (TG)n Simple_repeat Simple_repeat 2 34 0 877 254 86 5 chr12 30328127 30328347 -113954142 + MIR SINE MIR 3 240 -22 2090 166 28 18 chr12 30328595 30328987 -113953502 - MER57A LTR ERV1 0 403 8 728 238 55 25 chr12 30328997 30329232 -113953257 - MER57A-int LTR ERV1 -22 7515 7274 713 131 25 0 chr12 30329246 30329368 -113953121 - LTR54B LTR ERV1 -373 125 1 5530 189 26 59 chr12 30329369 30330588 -113951901 - MER57A-int LTR ERV1 -394 7143 5971 2420 99 0 10 chr12 30330588 30330902 -113951587 - AluSx SINE Alu 0 312 2 5530 189 26 59 chr12 30330902 30331045 -113951444 - MER57A-int LTR ERV1 -1566 5971 5825 5470 176 33 39 chr12 30331375 30332709 -113949780 - MER57A-int LTR ERV1 -1327 3553 3408 183 286 104 13 chr12 30332716 30332793 -113949696 - L2 LINE L2 -23 3249 3166 1645 184 75 16 chr12 30334120 30334549 -113947940 - Charlie1 DNA MER1_type 0 2761 2308 399 208 67 8 chr12 30334545 30334665 -113947824 - Charlie1 DNA MER1_type -2591 170 44 * 2327 200 102 33 chr12 30335544 30336219 -113946270 + MER72 LTR ERV1 1 722 0 291 328 74 33 chr12 30336232 30336409 -113946080 + L2 LINE L2 2901 3060 -212 193 345 63 21 chr12 30337107 30337298 -113945191 + L2 LINE L2 1902 2100 -1214 269 345 90 0 chr12 30337367 30337512 -113944977 + MIR3 SINE MIR 36 193 -15 392 302 62 46 chr12 30337666 30338037 -113944452 + L1ME4a LINE L1 5528 5904 -217 772 344 65 38 chr12 30338736 30339317 -113943172 + L3 LINE CR1 263 859 -718 764 315 59 44 chr12 30340173 30340582 -113941907 - L2 LINE L2 -76 3237 2823 359 326 17 50 chr12 30342700 30342881 -113939608 - MIR SINE MIR -12 250 76 480 226 157 19 chr12 30342956 30343115 -113939374 + MER5A DNA MER1_type 9 189 0 221 285 146 15 chr12 30345200 30345330 -113937159 - MIR3 SINE MIR -54 154 8 261 309 40 96 chr12 30345681 30345930 -113936559 - MIR SINE MIR -14 248 14 206 314 29 29 chr12 30345981 30346086 -113936403 + L2 LINE L2 3188 3292 -21 2251 86 3 19 chr12 30346126 30346439 -113936050 + AluYa5 SINE Alu 1 308 -3 437 319 0 0 chr12 30346720 30346833 -113935656 + MIR SINE MIR 11 123 -139 2396 87 0 3 chr12 30347074 30347374 -113935115 - AluSc SINE Alu -10 299 1 237 279 147 23 chr12 30347938 30348067 -113934422 - MER5A DNA MER1_type -6 183 39 2418 81 7 0 chr12 30349380 30349676 -113932813 + AluSq SINE Alu 2 299 -14 401 303 77 39 chr12 30350267 30350490 -113931999 + MIR SINE MIR 33 252 -10 1982 129 26 0 chr12 30350775 30351047 -113931442 + AluSx SINE Alu 1 279 -33 423 0 0 0 chr12 30351047 30351094 -113931395 + (CA)n Simple_repeat Simple_repeat 1 47 0 431 339 36 27 chr12 30351254 30351482 -113931007 - MIR SINE MIR 0 262 31 1063 92 0 52 chr12 30352177 30352330 -113930159 + FAM SINE Alu 25 169 -16 438 226 101 43 chr12 30353616 30353776 -113928713 + L1ME2 LINE L1 5413 5585 -579 2653 107 0 6 chr12 30353776 30354142 -113928347 + THE1B LTR MaLR 1 364 0 438 226 101 43 chr12 30354142 30354171 -113928318 + L1ME2 LINE L1 5585 5611 -553 302 158 70 7 chr12 30354184 30354476 -113928013 + (TA)n Simple_repeat Simple_repeat 1 310 0 1482 227 75 18 chr12 30354476 30354970 -113927519 + L1ME2 LINE L1 5643 6164 0 434 189 30 113 chr12 30355379 30355597 -113926892 + MER106B DNA MER1_type 29 236 0 522 99 0 0 chr12 30356300 30356381 -113926108 + Alu SINE Alu 231 311 0 189 107 0 0 chr12 30357193 30357221 -113925268 + (T)n Simple_repeat Simple_repeat 1 28 0 879 162 77 121 chr12 30357574 30357913 -113924576 + MER33 DNA MER1_type 1 324 0 437 337 43 0 chr12 30357954 30358117 -113924372 + MIR SINE MIR 2 171 -91 387 236 127 44 chr12 30358581 30358755 -113923734 + MIR SINE MIR 9 191 -62 1330 203 100 8 chr12 30360004 30360265 -113922224 + AluJb SINE Alu 1 285 -27 1171 152 5 11 chr12 30360552 30360736 -113921753 - AluSg/x SINE Alu -9 303 121 5191 36 2 0 chr12 30360746 30361362 -113921127 - L1PA7 LINE L1 -3 6151 5535 370 209 152 0 chr12 30361908 30362013 -113920476 - MER103 DNA DNA -44 122 2 21 36 0 0 chr12 30362613 30362641 -113919848 + AT_rich Low_complexity Low_complexity 1 28 0 252 56 0 0 chr12 30362859 30362886 -113919603 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 -6 2191 96 4 0 chr12 30362886 30363167 -113919322 - AluSq SINE Alu -31 282 1 252 56 0 0 chr12 30363167 30363175 -113919314 + (CAAAAA)n Simple_repeat Simple_repeat 31 38 0 24 67 0 0 chr12 30365770 30365815 -113916674 + AT_rich Low_complexity Low_complexity 1 45 0 925 135 8 0 chr12 30365894 30366027 -113916462 + AluJo SINE Alu 1 134 -178 266 321 46 9 chr12 30366376 30366485 -113916004 - MIR SINE MIR -50 212 100 560 173 19 19 chr12 30366515 30366619 -113915870 + FRAM SINE Alu 60 163 -13 431 241 14 0 chr12 30368949 30369071 -113913418 + MER20B DNA MER1_type 93 219 0 254 302 103 0 chr12 30369150 30369276 -113913213 - L2 LINE L2 -9 3304 3166 778 292 133 61 chr12 30369553 30370409 -113912080 - L2 LINE L2 -903 2411 1494 2264 159 22 26 chr12 30370413 30370829 -113911660 - MLT2D LTR ERVL 0 414 1 2109 136 0 0 chr12 30370982 30371284 -113911205 + AluSq SINE Alu 1 302 -11 772 249 95 119 chr12 30371317 30371885 -113910604 - L2 LINE L2 -5 3308 2699 404 148 0 0 chr12 30371885 30371946 -113910543 - AluS SINE Alu -223 90 30 772 249 95 119 chr12 30371946 30372111 -113910378 - L2 LINE L2 -614 2699 2532 324 208 56 96 chr12 30372115 30372240 -113910249 - MIR SINE MIR -11 251 132 693 263 84 20 chr12 30372305 30372678 -113909811 + LTR16A LTR ERVL 29 445 -12 21 0 0 0 chr12 30374633 30374654 -113907835 + AT_rich Low_complexity Low_complexity 1 21 0 413 207 83 16 chr12 30375667 30375788 -113906701 - L1ME4a LINE L1 -4 6117 5989 2087 124 0 7 chr12 30375979 30376296 -113906193 + AluSx SINE Alu 1 315 0 312 27 0 0 chr12 30376989 30377026 -113905463 + (CA)n Simple_repeat Simple_repeat 2 38 0 408 335 113 52 chr12 30378829 30379211 -113903278 - L2 LINE L2 -18 3254 2850 189 226 0 0 chr12 30379390 30379443 -113903046 + G-rich Low_complexity Low_complexity 4 56 0 187 191 16 111 chr12 30379808 30379871 -113902618 - MIR SINE MIR -121 141 85 1258 193 8 103 chr12 30379884 30380283 -113902206 - MLT1A2 LTR MaLR -13 361 1 380 298 0 0 chr12 30380500 30380584 -113901905 - MIR SINE MIR -157 105 22 2602 148 7 15 chr12 30381114 30381772 -113900717 - L1MA9 LINE L1 -608 5704 5050 2416 187 25 25 chr12 30381768 30382334 -113900155 + L1MA9 LINE L1 5710 6275 -37 * 180 347 0 74 chr12 30382955 30383050 -113899439 - MIR3 SINE MIR -12 196 109 584 291 18 44 chr12 30384329 30384556 -113897933 - MIR SINE MIR -13 249 29 521 268 14 0 chr12 30384686 30384824 -113897665 + MER58B DNA MER1_type 202 341 0 1480 179 88 7 chr12 30385476 30385772 -113896717 + AluJb SINE Alu 1 312 0 702 301 50 0 chr12 30386372 30386591 -113895898 - MIR SINE MIR -21 241 12 236 204 0 0 chr12 30389810 30389859 -113892630 + T-rich Low_complexity Low_complexity 1 49 0 17729 28 4 1 chr12 30389862 30392742 -113889747 - L1PA4 LINE L1 -3 6152 3263 1819 151 10 3 chr12 30392742 30393033 -113889456 - AluJo SINE Alu -3 309 17 204 333 69 0 chr12 30393195 30393282 -113889207 - L2 LINE L2 -32 3240 3148 605 291 141 27 chr12 30393915 30394214 -113888275 - L2 LINE L2 -1 3312 2980 261 273 11 57 chr12 30394331 30394345 -113888144 - MIR SINE MIR -157 105 92 3181 102 0 7 chr12 30394345 30394806 -113887683 + MER4C LTR ERV1 5 462 -3 261 273 11 57 chr12 30394806 30394879 -113887610 - MIR SINE MIR -170 92 22 188 244 0 0 chr12 30395162 30395207 -113887282 - MIR SINE MIR -14 248 204 26 30 0 0 chr12 30395258 30395291 -113887198 + AT_rich Low_complexity Low_complexity 1 33 0 371 259 6 28 chr12 30395293 30395404 -113887085 - MIR SINE MIR -61 147 40 751 228 43 0 chr12 30395430 30395592 -113886897 - MER58A DNA MER1_type -40 184 16 2541 96 25 30 chr12 30395604 30395922 -113886567 + LTR56 LTR ERV1 9 327 -118 2137 114 0 0 chr12 30395922 30396244 -113886245 + AluSg SINE Alu 1 322 0 2541 96 25 30 chr12 30396244 30396363 -113886126 + LTR56 LTR ERV1 327 445 0 234 0 0 0 chr12 30397326 30397352 -113885137 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 283 341 81 16 chr12 30398044 30398167 -113884322 + MIR SINE MIR 19 149 -59 221 220 0 0 chr12 30398649 30398699 -113883790 + MIR SINE MIR 157 206 -56 2218 116 0 0 chr12 30401430 30401724 -113880765 - AluSx SINE Alu -18 294 1 862 174 0 0 chr12 30402610 30402792 -113879697 - FLAM_C SINE Alu 0 182 1 202 170 38 38 chr12 30403117 30403170 -113879319 - MIR3 SINE MIR 0 208 156 1582 165 55 44 chr12 30403855 30404345 -113878144 - L1 LINE L1 -1540 4606 4153 201 147 0 0 chr12 30405299 30405333 -113877156 + (TA)n Simple_repeat Simple_repeat 2 35 0 383 331 0 15 chr12 30405337 30405467 -113877022 + L1MC4 LINE L1 6614 6741 -1301 452 333 59 0 chr12 30407015 30407201 -113875288 + MIR SINE MIR 2 198 -64 2324 71 10 0 chr12 30407256 30407550 -113874939 - AluY SINE Alu -13 298 2 1734 160 28 7 chr12 30407566 30407854 -113874635 - AluJb SINE Alu -18 294 1 378 278 191 12 chr12 30407865 30408027 -113874462 - MIR SINE MIR -71 191 1 180 324 93 19 chr12 30408204 30408312 -113874177 + L2 LINE L2 3198 3313 0 321 288 17 21 chr12 30408863 30408969 -113873520 - MIR SINE MIR -63 145 37 198 71 0 0 chr12 30410989 30411017 -113871472 + (A)n Simple_repeat Simple_repeat 1 28 0 3716 161 11 2 chr12 30411130 30411764 -113870725 - L1PA16 LINE L1 -9 6157 5518 303 106 0 0 chr12 30412280 30412327 -113870162 - Alu SINE Alu -6 296 250 373 285 28 35 chr12 30412645 30412789 -113869700 + L2 LINE L2 3171 3313 0 210 305 57 48 chr12 30412828 30412933 -113869556 - L2 LINE L2 -213 3059 2954 309 248 39 46 chr12 30415416 30415569 -113866920 + LTR33 LTR ERVL 367 518 -3 548 309 94 18 chr12 30417280 30417503 -113864986 - MIR SINE MIR -3 259 20 2002 131 10 30 chr12 30417835 30418132 -113864357 - AluSx SINE Alu -21 291 1 392 248 30 15 chr12 30421430 30421563 -113860926 - MER103 DNA DNA -1 165 31 345 299 5 82 chr12 30421762 30421807 -113860682 - L3b LINE CR1 -216 1367 1320 2395 83 13 3 chr12 30421807 30422108 -113860381 + AluSq SINE Alu 1 304 -9 345 299 5 82 chr12 30422108 30422246 -113860243 - L3b LINE CR1 -263 1320 1198 282 235 0 74 chr12 30422896 30422954 -113859535 - L2 LINE L2 -36 3277 3225 297 0 0 0 chr12 30422954 30422987 -113859502 + (GA)n Simple_repeat Simple_repeat 2 34 0 282 235 0 74 chr12 30422987 30423009 -113859480 - L2 LINE L2 -88 3225 3203 1705 290 54 10 chr12 30423204 30423721 -113858768 - L2 LINE L2 -443 2871 2332 327 261 22 22 chr12 30426849 30426941 -113855548 + MER58B DNA MER1_type 242 333 -8 2169 116 0 0 chr12 30428950 30429243 -113853246 + AluSg SINE Alu 1 293 -17 306 0 0 0 chr12 30429243 30429277 -113853212 + (TTAAA)n Simple_repeat Simple_repeat 2 35 0 2159 119 17 0 chr12 30429401 30429696 -113852793 - AluSq SINE Alu -12 301 2 738 280 26 0 chr12 30429892 30430124 -113852365 + L2 LINE L2 2819 3056 -257 232 262 66 0 chr12 30430176 30430237 -113852252 + L2 LINE L2 3197 3261 -52 22 35 0 0 chr12 30431529 30431558 -113850931 + AT_rich Low_complexity Low_complexity 1 29 0 486 290 48 65 chr12 30431582 30431830 -113850659 - L2 LINE L2 -51 3262 3019 2294 184 15 36 chr12 30431955 30432236 -113850253 + L1MB5 LINE L1 4886 5171 -1013 2397 93 3 3 chr12 30432236 30432547 -113849942 + AluSq SINE Alu 1 311 -2 2294 184 15 36 chr12 30432547 30433189 -113849300 + L1MB5 LINE L1 5171 5786 -398 1586 197 105 25 chr12 30433201 30433679 -113848810 + MER34 LTR ERV1 27 542 0 1622 214 31 16 chr12 30433680 30433803 -113848686 + L1MB5 LINE L1 5786 5906 -268 3375 110 65 50 chr12 30433803 30434076 -113848413 + MER4B LTR ERV1 1 268 -342 2134 125 7 0 chr12 30434076 30434379 -113848110 - AluSx SINE Alu -7 305 1 3375 110 65 50 chr12 30434379 30434455 -113848034 + MER4B LTR ERV1 268 341 -269 2362 66 3 7 chr12 30434455 30434756 -113847733 + AluY SINE Alu 1 300 -11 3375 110 65 50 chr12 30434756 30435006 -113847483 + MER4B LTR ERV1 341 610 0 1622 214 31 16 chr12 30435006 30435265 -113847224 + L1MB5 LINE L1 5906 6174 0 1920 228 102 24 chr12 30435392 30435590 -113846899 - L1ME1 LINE L1 -5 6972 6791 2261 111 50 25 chr12 30435590 30435952 -113846537 - THE1C LTR MaLR -4 371 1 1920 228 102 24 chr12 30435952 30437003 -113845486 - L1ME1 LINE L1 -186 6791 5613 252 284 23 0 chr12 30437034 30437122 -113845367 - L1ME1 LINE L1 -5442 1417 1328 * 469 295 18 26 chr12 30437099 30437326 -113845163 - L1ME1 LINE L1 -5469 1478 1254 2204 139 13 26 chr12 30437724 30438104 -113844385 + THE1C LTR MaLR 1 375 0 213 333 20 30 chr12 30438904 30439003 -113843486 - L2 LINE L2 0 3272 3175 2549 210 83 10 chr12 30439435 30440035 -113842454 + MER67B LTR ERV1 11 654 -7 242 338 88 0 chr12 30440186 30440266 -113842223 + L3b LINE CR1 1475 1561 -22 255 54 27 0 chr12 30440893 30440930 -113841559 + L1MC5 LINE L1 7189 7226 -735 1538 201 69 70 chr12 30441019 30441690 -113840799 + L1MC5 LINE L1 7226 7895 -66 1847 80 0 0 chr12 30441962 30442187 -113840302 + AluSc SINE Alu 8 232 -77 1461 186 0 52 chr12 30442190 30442497 -113839992 + AluJo SINE Alu 11 301 -11 351 0 0 0 chr12 30442503 30442542 -113839947 + (CA)n Simple_repeat Simple_repeat 2 40 0 3736 159 38 26 chr12 30443475 30444240 -113838249 + LTR1 LTR ERV1 12 785 0 1134 254 88 5 chr12 30444876 30445286 -113837203 + L1ME3A LINE L1 5456 5899 -271 9371 172 152 7 chr12 30445710 30448035 -113834454 + L1PBa LINE L1 8 2670 -4193 3282 80 14 16 chr12 30448029 30448061 -113834428 + L1P5 LINE L1 5278 5309 -842 * 2483 62 0 0 chr12 30448061 30448353 -113834136 + AluY SINE Alu 1 292 -19 192 40 0 0 chr12 30448357 30448382 -113834107 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 3282 80 14 16 chr12 30448382 30448859 -113833630 + L1P5 LINE L1 5312 5791 -360 671 42 89 13 chr12 30448910 30449150 -113833339 + (TA)n Simple_repeat Simple_repeat 1 258 0 31 0 0 0 chr12 30449150 30449181 -113833308 + AT_rich Low_complexity Low_complexity 1 31 0 331 264 22 22 chr12 30449184 30449275 -113833214 - L1MC4 LINE L1 -1339 6703 6613 28 0 0 0 chr12 30449275 30449303 -113833186 + AT_rich Low_complexity Low_complexity 1 28 0 659 135 9 13 chr12 30449303 30449529 -113832960 + (TA)n Simple_repeat Simple_repeat 1 224 0 351 0 0 0 chr12 30449529 30449568 -113832921 + (TG)n Simple_repeat Simple_repeat 2 40 0 2320 134 0 8 chr12 30449569 30449942 -113832547 + L1PB1 LINE L1 5782 6151 0 401 324 97 40 chr12 30450265 30450512 -113831977 + L2 LINE L2 2958 3218 -54 190 268 120 84 chr12 30451316 30451458 -113831031 - MIR SINE MIR -84 178 32 204 352 97 34 chr12 30452227 30452403 -113830086 + MER5A DNA MER1_type 1 187 -2 2081 135 10 0 chr12 30452449 30452737 -113829752 - AluSx SINE Alu -21 291 1 287 315 11 22 chr12 30453615 30453704 -113828785 + MER5A DNA MER1_type 98 185 -4 222 37 0 0 chr12 30453815 30453842 -113828647 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 1250 197 35 3 chr12 30454090 30454400 -113828089 - MER33 DNA MER1_type 0 324 5 2289 107 10 3 chr12 30455492 30455802 -113826687 - AluSx SINE Alu 0 312 1 284 269 39 0 chr12 30456417 30456547 -113825942 + MLT1J1 LTR MaLR 21 155 -291 486 231 9 131 chr12 30456583 30456904 -113825585 + L1MC5 LINE L1 7630 7911 -50 301 386 43 25 chr12 30458011 30458174 -113824315 - L2 LINE L2 0 3272 3107 2026 139 0 0 chr12 30458198 30458472 -113824017 + AluSx SINE Alu 2 275 -37 41 21 0 0 chr12 30458486 30458534 -113823955 + AT_rich Low_complexity Low_complexity 1 48 0 341 341 20 29 chr12 30458643 30458889 -113823600 - L2 LINE L2 -646 2668 2425 3247 195 11 35 chr12 30459444 30460298 -113822191 + L1MB8 LINE L1 5072 5907 -271 2249 97 10 0 chr12 30460298 30460598 -113821891 - AluSc SINE Alu -6 303 1 3247 195 11 35 chr12 30460598 30460669 -113821820 + L1MB8 LINE L1 5907 5978 -200 248 239 35 42 chr12 30460711 30460853 -113821636 - LTR37B LTR ERV1 -129 339 199 228 135 0 0 chr12 30461737 30461774 -113820715 + (TA)n Simple_repeat Simple_repeat 1 37 0 1637 93 23 0 chr12 30461775 30461989 -113820500 - AluSg/x SINE Alu -10 302 84 1950 137 43 0 chr12 30463241 30463540 -113818949 + AluSx SINE Alu 1 312 0 27 0 0 0 chr12 30463730 30463757 -113818732 + AT_rich Low_complexity Low_complexity 1 27 0 2009 161 57 31 chr12 30464647 30465068 -113817421 + MSTB1 LTR MaLR 1 432 0 583 281 103 51 chr12 30465444 30465918 -113816571 + MLT1H LTR MaLR 51 549 0 198 0 0 0 chr12 30466194 30466216 -113816273 + (TA)n Simple_repeat Simple_repeat 1 22 0 699 265 0 29 chr12 30466410 30466614 -113815875 + MIR SINE MIR 17 214 -48 2010 115 3 45 chr12 30466837 30467149 -113815340 - AluSx SINE Alu -9 303 5 2345 75 0 53 chr12 30467787 30468105 -113814384 + AluSg SINE Alu 1 301 -9 2279 116 0 0 chr12 30468932 30469234 -113813255 - AluSq SINE Alu -11 302 1 2289 16 0 0 chr12 30469377 30469632 -113812857 + AluYa5 SINE Alu 55 309 -2 221 0 35 0 chr12 30469636 30469665 -113812824 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 207 254 0 18 chr12 30469963 30470018 -113812471 + (CAA)n Simple_repeat Simple_repeat 2 55 0 362 300 18 0 chr12 30470018 30470128 -113812361 - MIR SINE MIR -27 235 124 318 333 99 25 chr12 30470340 30470502 -113811987 + MIR3 SINE MIR 28 201 -7 2508 147 4 46 chr12 30471056 30471552 -113810937 + MER31A LTR ERV1 1 475 -10 2331 60 31 50 chr12 30471633 30471950 -113810539 - AluY SINE Alu 0 311 1 331 314 186 21 chr12 30473249 30473443 -113809046 - MIR SINE MIR -16 246 21 910 162 16 54 chr12 30473542 30473727 -113808762 - MSTD LTR MaLR 0 396 219 426 172 11 21 chr12 30473772 30473865 -113808624 - MSTD LTR MaLR -336 92 1 2416 101 0 0 chr12 30473872 30474178 -113808311 - AluSx SINE Alu -6 306 1 334 361 37 11 chr12 30474641 30474832 -113807657 - L2 LINE L2 -410 2904 2709 549 268 202 5 chr12 30475728 30475926 -113806563 - MIR SINE MIR -12 250 14 1810 167 0 20 chr12 30476070 30476370 -113806119 + AluJo SINE Alu 7 300 -12 2093 94 0 28 chr12 30476429 30476765 -113805724 + AluSg SINE Alu 1 328 0 835 276 44 18 chr12 30476916 30477141 -113805348 - MIR SINE MIR -10 252 22 31 58 0 0 chr12 30479004 30479056 -113803433 + AT_rich Low_complexity Low_complexity 1 52 0 2427 96 3 0 chr12 30479164 30479476 -113803013 - AluSp SINE Alu 0 313 1 315 320 163 25 chr12 30479555 30479758 -113802731 + MIR SINE MIR 14 244 -18 493 247 11 86 chr12 30480022 30480196 -113802293 + MER91A DNA MER1_type 13 173 -23 242 239 0 0 chr12 30480251 30480297 -113802192 + MER91A DNA MER1_type 145 190 0 445 243 87 0 chr12 30480790 30480893 -113801596 + MER81 DNA DNA 2 113 -1 408 71 0 0 chr12 30480993 30481049 -113801440 + (CA)n Simple_repeat Simple_repeat 2 57 0 181 238 38 62 chr12 30482619 30482699 -113799790 - L3 LINE CR1 -1193 384 307 2821 163 22 40 chr12 30482920 30483474 -113799015 + MER44D DNA MER2_type 4 602 -3 840 249 87 42 chr12 30483679 30484060 -113798429 + MLT1J1 LTR MaLR 2 399 -47 516 257 93 20 chr12 30484419 30484812 -113797677 + L1ME4a LINE L1 5695 6120 -1 208 154 39 0 chr12 30485109 30485161 -113797328 + GA-rich Low_complexity Low_complexity 1 54 0 567 291 29 34 chr12 30485350 30485843 -113796646 + L1MC5 LINE L1 6309 6799 -1015 2145 96 0 4 chr12 30486260 30486540 -113795949 + AluSx SINE Alu 28 306 -6 1504 196 46 78 chr12 30486650 30487215 -113795274 + L1MC5 LINE L1 7015 7561 -400 3360 205 51 30 chr12 30487421 30488467 -113794022 + L1MD2 LINE L1 5240 6357 -2 1793 178 3 7 chr12 30489263 30489561 -113792928 - AluSx SINE Alu -15 297 1 180 232 18 18 chr12 30490138 30490194 -113792295 + MIR SINE MIR 171 226 -36 21 0 0 0 chr12 30491346 30491367 -113791122 + AT_rich Low_complexity Low_complexity 1 21 0 208 293 171 33 chr12 30491444 30491806 -113790683 + L2 LINE L2 1827 2238 -1076 496 266 7 45 chr12 30491859 30492013 -113790476 + MER63A DNA MER1_type 51 198 -12 2166 198 129 25 chr12 30492402 30493057 -113789432 + L1MC4 LINE L1 7081 7819 -223 1387 191 87 61 chr12 30493057 30493435 -113789054 - MLT1B LTR MaLR 0 390 3 2166 198 129 25 chr12 30493435 30493498 -113788991 + L1MC4 LINE L1 7819 7874 -168 213 280 159 28 chr12 30494080 30494187 -113788302 - MIR SINE MIR -52 210 90 562 269 73 96 chr12 30494233 30494701 -113787788 + MLT1J LTR MaLR 23 479 -32 340 140 0 0 chr12 30494701 30494758 -113787731 - Alu SINE Alu -4 298 242 1709 87 4 9 chr12 30494758 30494987 -113787502 - AluSg SINE Alu -38 272 45 326 283 27 53 chr12 30495840 30496027 -113786462 - MARNA DNA Mariner -342 244 63 3187 150 39 73 chr12 30496271 30496986 -113785503 + LTR8 LTR ERV1 1 691 0 2109 240 60 14 chr12 30497835 30498501 -113783988 + L1MB7 LINE L1 5395 6091 -93 474 159 0 0 chr12 30498526 30498614 -113783875 - L1MA5A LINE L1 -2 6295 6208 2060 108 29 42 chr12 30498644 30499022 -113783467 - L1MA5 LINE L1 -2 6298 5926 267 165 18 9 chr12 30499026 30499107 -113783382 + L1ME1 LINE L1 6095 6177 -1 1274 152 0 0 chr12 30499717 30499927 -113782562 + MER2 DNA MER2_type 1 210 -135 740 208 68 76 chr12 30500014 30500075 -113782414 - MLT1D LTR MaLR -6 461 401 2175 94 22 0 chr12 30500075 30500384 -113782105 + AluSq SINE Alu 1 315 0 740 208 68 76 chr12 30500384 30500721 -113781768 - MLT1D LTR MaLR -66 401 64 2190 110 7 0 chr12 30500721 30501022 -113781467 - AluSc SINE Alu -6 303 1 740 208 68 76 chr12 30501022 30501085 -113781404 - MLT1D LTR MaLR -403 64 2 324 0 0 0 chr12 30501211 30501247 -113781242 + (TA)n Simple_repeat Simple_repeat 1 36 0 512 288 0 16 chr12 30502436 30502561 -113779928 + L2 LINE L2 3190 3312 -1 1086 219 94 88 chr12 30502899 30503397 -113779092 - MLT2B1 LTR ERVL -8 512 12 821 232 53 13 chr12 30503389 30503855 -113778634 + LTR48B LTR ERV1 11 594 -50 * 1773 130 65 14 chr12 30505067 30505359 -113777130 - AluJb SINE Alu -5 307 1 24 32 0 0 chr12 30505437 30505468 -113777021 + AT_rich Low_complexity Low_complexity 1 31 0 1075 181 0 0 chr12 30505468 30505639 -113776850 - AluJo/FRAM SINE Alu -14 298 128 1570 140 112 4 chr12 30505639 30505917 -113776572 - AluSg1 SINE Alu -1 308 1 201 250 0 0 chr12 30506250 30506294 -113776195 + MIR SINE MIR 217 260 -2 1281 242 54 19 chr12 30506643 30507072 -113775417 + LTR16B LTR ERVL 4 447 -17 235 133 89 0 chr12 30507722 30507767 -113774722 - MLT1E LTR MaLR 0 567 519 * 491 300 131 35 chr12 30507766 30508139 -113774350 - MLT1E LTR MaLR -183 410 2 2169 120 3 10 chr12 30508280 30508589 -113773900 + AluSx SINE Alu 1 307 -5 705 84 149 0 chr12 30509303 30509410 -113773079 + THE1B LTR MaLR 1 123 -241 658 128 9 9 chr12 30509408 30509517 -113772972 + THE1B LTR MaLR 256 364 0 * 180 152 0 0 chr12 30509772 30509805 -113772684 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 445 326 107 82 chr12 30509909 30510544 -113771945 + L3 LINE CR1 698 1348 -229 3133 142 17 4 chr12 30510703 30511245 -113771244 + MER34C LTR ERV1 37 585 0 312 297 18 18 chr12 30513452 30513563 -113768926 - L2 LINE L2 -6 3307 3197 525 239 69 64 chr12 30514645 30514833 -113767656 + MIR SINE MIR 38 226 -36 392 150 56 4 chr12 30515931 30516406 -113766083 + (TA)n Simple_repeat Simple_repeat 1 499 0 1669 179 15 0 chr12 30516422 30516696 -113765793 - AluJo SINE Alu -34 278 1 2538 74 0 6 chr12 30517141 30517453 -113765036 + AluY SINE Alu 1 310 -1 4221 209 45 47 chr12 30517885 30518306 -113764183 - Charlie1a DNA MER1_type -1431 1330 910 1894 176 50 58 chr12 30518306 30518712 -113763777 + MLT2C2 LTR ERVL 1 404 -60 402 21 0 0 chr12 30518712 30518759 -113763730 + (CA)n Simple_repeat Simple_repeat 2 48 0 1894 176 50 58 chr12 30518759 30518817 -113763672 + MLT2C2 LTR ERVL 404 461 -3 4221 209 45 47 chr12 30518817 30519216 -113763273 - Charlie1a DNA MER1_type -1851 910 512 1191 209 85 62 chr12 30519216 30519603 -113762886 + MSTD LTR MaLR 1 396 0 4221 209 45 47 chr12 30519603 30520111 -113762378 - Charlie1a DNA MER1_type -2249 512 3 298 320 40 20 chr12 30520360 30520510 -113761979 + Charlie2 DNA MER1_type 173 325 -2457 1145 231 60 7 chr12 30520512 30520928 -113761561 + Charlie2 DNA MER1_type 1856 2293 -569 334 306 9 0 chr12 30520937 30521045 -113761444 - MIR SINE MIR 0 262 154 2270 112 42 8 chr12 30521045 30521401 -113761088 - THE1C LTR MaLR 0 375 8 414 0 0 0 chr12 30521405 30521451 -113761038 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1443 223 0 11 chr12 30521454 30521737 -113760752 - AluJo SINE Alu -30 282 3 364 228 236 31 chr12 30521745 30521872 -113760617 - MIR SINE MIR -109 153 1 1111 243 55 35 chr12 30521892 30522151 -113760338 + Charlie2 DNA MER1_type 2309 2561 -301 2321 58 0 24 chr12 30522151 30522465 -113760024 + AluY SINE Alu 1 307 0 1111 243 55 35 chr12 30522465 30522747 -113759742 + Charlie2 DNA MER1_type 2561 2862 0 1445 289 15 26 chr12 30523553 30524085 -113758404 + L1ME3A LINE L1 119 644 -5475 2377 70 0 0 chr12 30524085 30524369 -113758120 + AluY SINE Alu 17 300 -11 305 237 32 38 chr12 30524456 30524588 -113757901 + HsTC2 DNA Tc2 35 1898 0 307 308 141 32 chr12 30524591 30525088 -113757401 - L1MEd LINE L1 -5299 820 270 347 311 69 23 chr12 30525846 30526513 -113755976 + L1ME3A LINE L1 849 1581 -4729 491 256 107 29 chr12 30526728 30527103 -113755386 + L1ME3A LINE L1 2210 2613 -3516 1959 202 51 20 chr12 30527119 30527625 -113754864 - Charlie1b DNA MER1_type 0 523 2 302 318 19 0 chr12 30527745 30527852 -113754637 + L1ME3A LINE L1 2705 2813 -3316 471 279 90 60 chr12 30527859 30528055 -113754434 + L1ME3A LINE L1 4051 4239 -1890 2239 125 0 3 chr12 30528055 30528368 -113754121 + AluSx SINE Alu 1 312 0 471 279 90 60 chr12 30528368 30528691 -113753798 + L1ME3A LINE L1 4239 4586 -1543 1334 145 100 52 chr12 30528856 30529125 -113753364 + AluJo SINE Alu 1 282 -30 661 278 50 56 chr12 30529487 30530109 -113752380 + L1ME3A LINE L1 5293 5910 -243 2192 105 9 29 chr12 30530429 30530744 -113751745 - AluSx SINE Alu -3 309 1 1102 138 12 0 chr12 30530754 30530914 -113751575 - AluSp SINE Alu -14 299 138 2335 75 0 0 chr12 30532771 30533093 -113749396 - AluY SINE Alu 0 322 1 216 0 0 0 chr12 30533203 30533227 -113749262 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 945 155 20 0 chr12 30533229 30533377 -113749112 - FRAM SINE Alu -31 145 1 199 259 93 0 chr12 30533870 30533924 -113748565 - MIR3 SINE MIR -25 183 125 186 232 159 14 chr12 30534004 30534073 -113748416 + MER5A DNA MER1_type 31 109 -80 1960 133 3 7 chr12 30534134 30534435 -113748054 + AluSg SINE Alu 1 300 -10 650 224 59 0 chr12 30534474 30534626 -113747863 + MIR SINE MIR 21 181 -81 199 220 40 0 chr12 30534682 30534732 -113747757 + L2 LINE L2 3178 3229 -84 230 149 75 60 chr12 30534863 30534930 -113747559 + LTR33A LTR ERVL 121 188 -335 506 283 0 8 chr12 30535175 30535295 -113747194 - L2 LINE L2 -1 3312 3194 1682 143 24 0 chr12 30536617 30536868 -113745621 - AluSq SINE Alu -56 257 1 616 35 118 0 chr12 30536969 30537054 -113745435 + MER85 DNA T2_type 1 95 -44 246 278 157 17 chr12 30538431 30538546 -113743943 + MIR SINE MIR 16 146 -62 572 222 105 0 chr12 30538568 30538721 -113743768 - MIR SINE MIR -63 199 31 758 271 31 26 chr12 30540689 30540918 -113741571 + MIR SINE MIR 29 258 -4 2257 112 0 0 chr12 30541832 30542135 -113740354 - AluSg SINE Alu -7 303 1 2328 79 23 0 chr12 30542654 30542958 -113739531 + AluSp SINE Alu 1 311 -2 281 295 122 19 chr12 30543109 30543265 -113739224 + MIR SINE MIR 23 194 -68 299 325 206 5 chr12 30543481 30543675 -113738814 - MIR SINE MIR -17 245 13 186 43 0 0 chr12 30544712 30544735 -113737754 + (CA)n Simple_repeat Simple_repeat 2 24 0 2026 145 3 0 chr12 30545126 30545423 -113737066 - AluSg SINE Alu -12 298 1 1254 208 36 40 chr12 30545429 30545629 -113736860 - AluJo SINE Alu -10 302 102 3062 74 18 48 chr12 30545629 30546087 -113736402 + MLT2A1 LTR ERVL 1 444 0 1254 208 36 40 chr12 30546087 30546189 -113736300 - AluJo SINE Alu -210 102 1 262 323 57 40 chr12 30546901 30547025 -113735464 - MIR SINE MIR -64 144 19 24 53 0 0 chr12 30547679 30547717 -113734772 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 30548064 30548085 -113734404 + AT_rich Low_complexity Low_complexity 1 21 0 743 301 36 16 chr12 30548455 30548704 -113733785 - MIR SINE MIR -7 255 2 883 51 0 17 chr12 30549712 30549830 -113732659 + L1PA4 LINE L1 6038 6153 -2 998 197 0 16 chr12 30550344 30550527 -113731962 - AluJo SINE Alu -13 299 120 2213 114 13 0 chr12 30550758 30551064 -113731425 + AluSx SINE Alu 1 310 -2 535 222 56 0 chr12 30552302 30552410 -113730079 + L2 LINE L2 3200 3313 0 579 270 161 5 chr12 30553162 30553373 -113729116 - MIR SINE MIR -12 250 7 581 309 68 9 chr12 30553893 30554113 -113728376 + MIR SINE MIR 3 235 -27 1655 216 50 12 chr12 30554157 30554574 -113727915 - MER63B DNA MER1_type 0 436 4 294 288 68 34 chr12 30554793 30554911 -113727578 - L2 LINE L2 -4 3268 3147 683 285 109 33 chr12 30555128 30555480 -113727009 + L2 LINE L2 2369 2693 -620 297 0 0 0 chr12 30555480 30555513 -113726976 + (CA)n Simple_repeat Simple_repeat 2 34 0 683 285 109 33 chr12 30555513 30555963 -113726526 + L2 LINE L2 2693 3312 -1 1963 137 46 8 chr12 30556134 30556485 -113726004 + MER93b LTR ERV1 10 373 0 269 288 0 0 chr12 30556912 30556978 -113725511 + GA-rich Low_complexity Low_complexity 1 66 0 603 268 122 30 chr12 30557317 30557546 -113724943 - HAL1 LINE L1 -38 2469 2194 240 59 0 0 chr12 30557546 30557580 -113724909 + (CA)n Simple_repeat Simple_repeat 2 35 0 603 268 122 30 chr12 30557580 30557712 -113724777 - HAL1 LINE L1 -313 2194 2075 653 312 116 5 chr12 30557760 30558148 -113724341 + L1ME2 LINE L1 5454 5884 -280 399 207 99 9 chr12 30558850 30558961 -113723528 + MIR SINE MIR 29 149 -113 187 371 0 0 chr12 30559118 30559180 -113723309 + L2 LINE L2 3134 3195 -77 2227 114 0 0 chr12 30559283 30559582 -113722907 - AluSc SINE Alu -10 299 1 21 0 0 0 chr12 30559592 30559613 -113722876 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 30560558 30560579 -113721910 + AT_rich Low_complexity Low_complexity 1 21 0 284 190 51 25 chr12 30560764 30560843 -113721646 + Charlie3 DNA MER1_type 2330 2410 -300 387 276 151 33 chr12 30561624 30561776 -113720713 + MIR SINE MIR 24 193 -69 969 184 32 22 chr12 30562677 30562862 -113719627 - MER20 DNA MER1_type -3 216 30 2645 84 5 79 chr12 30563062 30563455 -113719034 - THE1B LTR MaLR 0 364 1 1972 141 7 3 chr12 30564631 30564930 -113717559 + AluJb SINE Alu 1 300 -12 1884 214 111 94 chr12 30564963 30565346 -113717143 + L1MC4 LINE L1 6661 7036 -1006 1733 145 176 0 chr12 30565346 30565642 -113716847 + MER7A DNA MER2_type 1 346 0 1884 214 111 94 chr12 30565642 30566123 -113716366 + L1MC4 LINE L1 7036 7540 -502 215 261 9 27 chr12 30566220 30566331 -113716158 + (TATAA)n Simple_repeat Simple_repeat 1 109 0 * 340 151 70 35 chr12 30566282 30566454 -113716035 + (TA)n Simple_repeat Simple_repeat 1 178 0 258 215 17 64 chr12 30566429 30566601 -113715888 + (TTATA)n Simple_repeat Simple_repeat 1 164 0 * 232 157 39 0 chr12 30566601 30566652 -113715837 + L1MC4 LINE L1 7577 7629 -413 479 227 69 74 chr12 30566681 30566897 -113715592 + L1MC4 LINE L1 7821 8035 -7 1732 134 27 30 chr12 30567316 30567614 -113714875 + AluJb SINE Alu 1 297 -15 1056 189 66 46 chr12 30569544 30569803 -113712686 + MER99 DNA DNA 204 467 -361 794 179 0 0 chr12 30569805 30569928 -113712561 + FRAM SINE Alu 27 149 -27 3525 232 113 12 chr12 30570546 30571758 -113710731 - Charlie2a DNA MER1_type -1 2861 1528 1229 281 48 34 chr12 30571814 30572251 -113710238 - Charlie2a DNA MER1_type -2308 474 32 21 0 0 0 chr12 30572332 30572353 -113710136 + AT_rich Low_complexity Low_complexity 1 21 0 2182 124 0 10 chr12 30572372 30572670 -113709819 - AluSx SINE Alu -17 295 1 276 241 72 0 chr12 30573177 30573260 -113709229 - L1MC4 LINE L1 -1339 6703 6615 383 290 98 22 chr12 30575150 30575333 -113707156 + L1ME LINE L1 5497 5693 -428 257 115 0 39 chr12 30575334 30575386 -113707103 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 767 355 103 2 chr12 30576335 30576741 -113705748 + L3 LINE CR1 406 852 -725 272 331 33 26 chr12 30576876 30577027 -113705462 - L2 LINE L2 -4 3309 3158 264 349 47 9 chr12 30577300 30577406 -113705083 + L2 LINE L2 3203 3312 -1 817 278 135 18 chr12 30577488 30577936 -113704553 + Charlie8 DNA MER1_type 2 489 -1928 189 0 0 0 chr12 30578838 30578859 -113703630 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1200 330 18 48 chr12 30578903 30579576 -113702913 - ERVL LTR ERVL -3899 1865 1213 248 302 122 29 chr12 30579587 30579726 -113702763 - MER5B DNA MER1_type 0 178 27 1300 266 54 67 chr12 30580677 30581308 -113701181 - MER21B LTR ERV1 -143 720 98 308 257 21 78 chr12 30581278 30581419 -113701070 - MER21B LTR ERV1 -408 197 22 * 653 289 53 33 chr12 30582116 30582420 -113700069 - L2 LINE L2 -195 3118 2809 2214 103 7 3 chr12 30582519 30582811 -113699678 - AluSc SINE Alu -16 293 1 1682 263 77 58 chr12 30584154 30584805 -113697684 - MLT2F LTR ERVL 0 663 1 4398 191 65 32 chr12 30585130 30586278 -113696211 + L1MD2 LINE L1 5176 6356 -3 191 357 0 0 chr12 30586405 30586461 -113696028 + MIR SINE MIR 194 249 -13 1393 209 7 20 chr12 30586967 30587269 -113695220 + AluJo SINE Alu 6 303 -9 382 274 108 110 chr12 30588985 30589511 -113692978 + L1M2 LINE L1 612 1136 -5713 21 36 0 0 chr12 30590336 30590364 -113692125 + AT_rich Low_complexity Low_complexity 1 28 0 813 182 0 0 chr12 30591164 30591296 -113691193 + FLAM_C SINE Alu 1 132 -1 2024 109 11 0 chr12 30591689 30592005 -113690484 + AluSc SINE Alu 1 319 0 772 139 16 0 chr12 30592446 30592568 -113689921 + MER31A LTR ERV1 1 124 -361 285 81 0 0 chr12 30592566 30592603 -113689886 - MER31A LTR ERV1 -331 154 118 * 832 150 36 14 chr12 30592599 30592739 -113689750 + MER31A LTR ERV1 343 485 0 516 260 68 64 chr12 30593049 30593324 -113689165 + MER45R DNA AcHobo 312 587 -994 1133 291 110 20 chr12 30593324 30593815 -113688674 - MER34 LTR ERV1 0 542 8 1424 154 56 79 chr12 30593822 30594166 -113688323 + MER45R DNA AcHobo 586 985 -596 2037 88 40 0 chr12 30594166 30594438 -113688051 - AluSx SINE Alu -29 283 1 1424 154 56 79 chr12 30594438 30594617 -113687872 + MER45R DNA AcHobo 985 1167 -414 1486 264 43 0 chr12 30594623 30594991 -113687498 + MER63 DNA MER1_type 674 1057 -3 632 235 56 51 chr12 30595095 30595287 -113687202 + MER77 LTR ERV1 56 248 -357 352 241 117 88 chr12 30595287 30595708 -113686781 + MER34C LTR ERV1 2 437 -105 1715 126 96 11 chr12 30595718 30595989 -113686500 + AluSg SINE Alu 1 294 -16 3119 85 30 7 chr12 30595989 30596425 -113686064 + L1PA8 LINE L1 5694 6139 -33 421 242 73 0 chr12 30596536 30596701 -113685788 + (CATG)n Simple_repeat Simple_repeat 2 178 0 349 222 64 35 chr12 30596801 30596972 -113685517 + (CATG)n Simple_repeat Simple_repeat 2 177 0 270 253 71 12 chr12 30596996 30597166 -113685323 + (CATA)n Simple_repeat Simple_repeat 1 180 0 309 238 66 20 chr12 30597204 30597355 -113685134 + (CATG)n Simple_repeat Simple_repeat 1 158 0 263 245 90 0 chr12 30597810 30597965 -113684524 + (CATG)n Simple_repeat Simple_repeat 2 170 0 233 204 88 29 chr12 30599311 30599448 -113683041 + (CATG)n Simple_repeat Simple_repeat 1 145 0 219 179 83 24 chr12 30599576 30599660 -113682829 + (CATG)n Simple_repeat Simple_repeat 1 89 0 874 226 0 87 chr12 30600172 30600367 -113682122 - MER45A DNA AcHobo 0 178 1 411 316 31 25 chr12 30601204 30601400 -113681089 - MER117 DNA MER1_type 0 197 1 248 195 149 35 chr12 30602073 30602160 -113680329 + MIR SINE MIR 161 257 -5 343 350 19 6 chr12 30603372 30603529 -113678960 + L1MEc LINE L1 1644 1802 -4594 1057 235 37 7 chr12 30603531 30603803 -113678686 + L1MB7 LINE L1 5905 6184 0 187 259 74 19 chr12 30604928 30604982 -113677507 - L3b LINE CR1 -236 1347 1291 593 141 12 0 chr12 30605934 30606019 -113676470 + AluJo SINE Alu 49 134 -178 2445 74 7 0 chr12 30606020 30606319 -113676170 + AluY SINE Alu 1 301 -10 1730 173 0 24 chr12 30606327 30606616 -113675873 + AluJo SINE Alu 1 282 -30 2990 177 35 30 chr12 30606939 30607662 -113674827 - MER11A LTR ERVK 0 1266 359 2340 39 42 0 chr12 30607662 30607945 -113674544 - AluY SINE Alu -16 295 1 435 229 296 28 chr12 30608044 30608223 -113674266 + MIR SINE MIR 19 245 -17 255 305 0 38 chr12 30608261 30608366 -113674123 + MER117 DNA MER1_type 97 197 0 2346 112 0 0 chr12 30609154 30609466 -113673023 + AluSq SINE Alu 2 313 0 737 298 3 3 chr12 30609771 30610073 -113672416 - L1M4 LINE L1 -2366 3780 3479 312 202 12 60 chr12 30610084 30610168 -113672321 - L1M4 LINE L1 -2979 3167 3088 1257 250 93 19 chr12 30610335 30610382 -113672107 + L1ME2 LINE L1 3805 3847 -2299 1904 120 0 11 chr12 30610382 30610657 -113671832 + AluSc SINE Alu 23 294 -15 1257 250 93 19 chr12 30610657 30611197 -113671292 + L1ME2 LINE L1 3847 4436 -1710 556 212 0 9 chr12 30611197 30611310 -113671179 + Tigger3(Golem) DNA MER2_type 1 112 -2917 960 184 127 0 chr12 30611318 30611546 -113670943 - Tigger2 DNA MER2_type -10 2708 2452 4076 156 23 6 chr12 30611613 30612183 -113670306 - Tigger2 DNA MER2_type -1974 744 157 2093 133 0 0 chr12 30612183 30612484 -113670005 - AluSg SINE Alu -8 302 2 4076 156 23 6 chr12 30612484 30612643 -113669846 - Tigger2 DNA MER2_type -2561 157 2 2844 123 11 19 chr12 30612643 30613110 -113669379 + Tigger3(Golem) DNA MER2_type 2566 3028 -1 2398 242 57 31 chr12 30613156 30614843 -113667646 + L1ME2 LINE L1 4457 6332 -2 40691 37 21 1 chr12 30615144 30621168 -113661321 + L1PA3 LINE L1 2 6151 -4 534 220 89 6 chr12 30621947 30622115 -113660374 - MER53 DNA DNA 0 189 8 536 280 101 0 chr12 30626170 30626338 -113656151 + MIR SINE MIR 5 189 -73 1701 173 75 21 chr12 30626339 30626374 -113656115 - MLT2D LTR ERVL -6 408 376 321 26 0 0 chr12 30626374 30626412 -113656077 + (TG)n Simple_repeat Simple_repeat 1 38 0 189 0 0 0 chr12 30626414 30626435 -113656054 + (GA)n Simple_repeat Simple_repeat 2 22 0 1701 173 75 21 chr12 30626435 30626783 -113655706 - MLT2D LTR ERVL -38 376 1 180 0 0 0 chr12 30627281 30627301 -113655188 + (CTATT)n Simple_repeat Simple_repeat 2 21 0 1507 231 14 6 chr12 30627302 30627648 -113654841 - MLT1A1 LTR MaLR -16 349 1 7724 24 0 0 chr12 30627661 30628856 -113653633 + L1PA3 LINE L1 4957 6155 0 207 259 0 0 chr12 30629218 30629272 -113653217 + A-rich Low_complexity Low_complexity 2 55 0 674 227 167 35 chr12 30630466 30630748 -113651741 + LTR50 LTR ERVL 3 321 -474 371 169 81 105 chr12 30630781 30630905 -113651584 + LTR50 LTR ERVL 395 515 -280 1009 219 46 28 chr12 30630905 30631230 -113651259 + L1M4 LINE L1 4089 4419 -1727 1050 288 66 58 chr12 30631279 30631914 -113650575 + ERVL LTR ERVL 4741 5380 -384 214 147 0 0 chr12 30631959 30631993 -113650496 + (TG)n Simple_repeat Simple_repeat 1 34 0 7128 55 2 0 chr12 30632494 30633898 -113648591 + L1PA7 LINE L1 4736 6141 -13 912 109 31 109 chr12 30634670 30634827 -113647662 - L1MA3 LINE L1 0 7724 7556 201 74 0 0 chr12 30634827 30634854 -113647635 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1902 153 0 0 chr12 30634859 30635134 -113647355 - AluSx SINE Alu -37 275 1 912 109 31 109 chr12 30635134 30635199 -113647290 - L1MA3 LINE L1 -172 7552 7514 1545 176 96 33 chr12 30635199 30635272 -113647217 - MSTA LTR MaLR 0 428 361 2003 141 28 0 chr12 30635272 30635562 -113646927 + AluSx SINE Alu 6 303 -9 1545 176 96 33 chr12 30635562 30635885 -113646604 - MSTA LTR MaLR -67 361 7 8334 172 71 2 chr12 30635888 30637433 -113645056 - MSTA-int LTR MaLR 0 1651 1 2415 166 31 5 chr12 30637433 30637850 -113644639 - MSTA LTR MaLR 0 428 1 19697 165 29 11 chr12 30637850 30638492 -113643997 - L1MA3 LINE L1 -206 7518 6889 7644 23 5 0 chr12 30638492 30640090 -113642399 + L1PA2 LINE L1 4553 6154 -1 19697 165 29 11 chr12 30640090 30642294 -113640195 - L1MA3 LINE L1 -835 6889 4725 2388 87 3 0 chr12 30642294 30642603 -113639886 + AluY SINE Alu 1 310 -1 19697 165 29 11 chr12 30642603 30647052 -113635437 - L1MA3 LINE L1 -2999 4725 83 2063 158 3 0 chr12 30647052 30647363 -113635126 + AluSx SINE Alu 1 312 0 19697 165 29 11 chr12 30647363 30647436 -113635053 - L1MA3 LINE L1 -7641 83 13 634 293 120 13 chr12 30649101 30649458 -113633031 + L1ME4a LINE L1 5501 5901 -220 1597 168 72 26 chr12 30649458 30649803 -113632686 + MER46B DNA MER2_type 1 236 0 634 293 120 13 chr12 30649803 30649821 -113632668 + L1ME4a LINE L1 5901 5916 -205 1058 244 171 21 chr12 30649893 30650412 -113632077 - MLT2F LTR ERVL 0 663 19 591 280 151 0 chr12 30650652 30650838 -113631651 - MIR SINE MIR -42 220 7 2132 79 25 4 chr12 30650978 30651257 -113631232 - AluY SINE Alu -13 298 14 535 206 22 3 chr12 30651300 30651451 -113631038 - LTR37A LTR ERV1 -2 424 291 193 233 0 0 chr12 30651807 30651850 -113630639 + MIR3 SINE MIR 163 205 -3 22 35 0 0 chr12 30652289 30652318 -113630171 + AT_rich Low_complexity Low_complexity 1 29 0 3248 159 24 28 chr12 30652326 30652998 -113629491 - L1MA9 LINE L1 0 6312 5644 38879 59 2 3 chr12 30653878 30660037 -113622452 + L1PA5 LINE L1 1 6154 0 3220 31 3 0 chr12 30660037 30660419 -113622070 + L1PA5 LINE L1 5770 6153 -1 227 122 100 22 chr12 30660439 30660529 -113621960 - MER63 DNA MER1_type -96 965 869 2469 93 0 0 chr12 30660553 30660864 -113621625 + AluY SINE Alu 1 311 0 650 267 28 0 chr12 30660908 30661088 -113621401 - MIR SINE MIR -8 254 70 279 313 62 62 chr12 30661242 30661418 -113621071 + L2 LINE L2 2555 2730 -584 335 78 20 0 chr12 30661540 30661591 -113620898 + (GA)n Simple_repeat Simple_repeat 1 52 0 21 0 0 0 chr12 30662194 30662215 -113620274 + AT_rich Low_complexity Low_complexity 1 21 0 2231 96 24 0 chr12 30662710 30663003 -113619486 + AluSx SINE Alu 1 300 -12 1871 141 170 32 chr12 30663100 30663476 -113619013 + MSTA LTR MaLR 1 428 0 616 340 86 56 chr12 30664043 30664487 -113618002 + L2 LINE L2 2811 3267 -5 246 352 74 43 chr12 30664900 30665062 -113617427 + L2 LINE L2 3101 3267 -5 1256 227 35 27 chr12 30665869 30666239 -113616250 - MER93b LTR ERV1 0 373 1 322 190 38 0 chr12 30666240 30666319 -113616170 - MER65-int LTR ERV1 -395 7142 7061 549 313 10 0 chr12 30666436 30666628 -113615861 - MER65-int LTR ERV1 -536 7001 6808 553 250 73 26 chr12 30666676 30666882 -113615607 - MER65-int LTR ERV1 -252 4684 3777 2531 182 54 19 chr12 30666897 30667485 -113615004 - MER65-int LTR ERV1 -603 4333 3725 250 267 168 0 chr12 30667711 30667812 -113614677 + L2 LINE L2 3193 3310 -3 470 242 13 60 chr12 30667925 30668074 -113614415 - MIR SINE MIR -101 161 20 239 209 45 15 chr12 30668856 30668923 -113613566 - LTR67 LTR ERVL 0 557 489 242 341 90 12 chr12 30669722 30669889 -113612600 + L2 LINE L2 1913 2092 -1222 235 232 29 14 chr12 30670370 30670439 -113612050 + L3 LINE CR1 654 723 -854 1086 314 52 77 chr12 30670515 30670660 -113611829 + L3 LINE CR1 879 1026 -551 2231 119 0 19 chr12 30670660 30670970 -113611519 + AluSx SINE Alu 1 304 -8 1086 314 52 77 chr12 30670970 30671420 -113611069 + L3 LINE CR1 1026 1459 -118 332 312 0 40 chr12 30671535 30671660 -113610829 - L2 LINE L2 -14 3299 3180 402 345 36 36 chr12 30671672 30671866 -113610623 + MER91A DNA MER1_type 1 194 -2 754 295 183 25 chr12 30671868 30672318 -113610171 - L2 LINE L2 -140 3173 2491 279 276 20 20 chr12 30672323 30672421 -113610068 - MLT1K LTR MaLR -81 507 410 1944 144 19 22 chr12 30672474 30672787 -113609702 + AluJo SINE Alu 1 312 0 1890 188 78 37 chr12 30673170 30673271 -113609218 - MLT1D LTR MaLR 0 505 410 1864 146 168 8 chr12 30673271 30673640 -113608849 + MSTA LTR MaLR 1 428 0 1890 188 78 37 chr12 30673640 30674023 -113608466 - MLT1D LTR MaLR -95 410 1 2106 113 3 0 chr12 30674858 30675186 -113607303 - AluSx SINE Alu 0 329 1 818 261 17 6 chr12 30676279 30676459 -113606030 - MER5A DNA MER1_type 0 189 8 753 318 98 19 chr12 30676613 30676991 -113605498 + L2 LINE L2 2902 3309 -4 2354 78 16 16 chr12 30677020 30677326 -113605163 - AluSg SINE Alu -3 307 2 1029 274 81 58 chr12 30677633 30678273 -113604216 - L2 LINE L2 -1 3312 2669 225 229 21 0 chr12 30678381 30678429 -113604060 - L2 LINE L2 -5 3267 3219 241 255 0 85 chr12 30679586 30679680 -113602809 + MIR SINE MIR 32 117 -145 818 259 44 0 chr12 30679693 30679898 -113602591 + MIR SINE MIR 15 228 -34 259 297 131 35 chr12 30680169 30680314 -113602175 + MIR SINE MIR 48 206 -56 209 317 93 58 chr12 30681199 30681404 -113601085 + L3b LINE CR1 1132 1343 -240 263 212 45 15 chr12 30681935 30682001 -113600488 - MLT1J2 LTR MaLR -39 411 344 233 227 40 13 chr12 30682039 30682114 -113600375 - MLT1J2 LTR MaLR -307 143 67 2102 223 82 13 chr12 30682168 30682714 -113599775 - MLT1E LTR MaLR 0 593 10 509 320 33 13 chr12 30682726 30682879 -113599610 - MIR SINE MIR -104 158 3 282 335 87 60 chr12 30682946 30683212 -113599277 - L2 LINE L2 -588 2726 2454 661 306 215 10 chr12 30683246 30683642 -113598847 + L2 LINE L2 2837 3313 0 246 378 39 17 chr12 30683729 30683909 -113598580 - L2 LINE L2 -2418 896 713 333 242 40 40 chr12 30684108 30684207 -113598282 - MIR SINE MIR -82 180 82 257 190 0 52 chr12 30684374 30684432 -113598057 - L2 LINE L2 -1 3312 3258 44 35 0 0 chr12 30684497 30684555 -113597934 + AT_rich Low_complexity Low_complexity 1 58 0 2108 146 0 0 chr12 30686076 30686370 -113596119 - AluSx SINE Alu -18 294 1 2693 170 22 4 chr12 30686381 30686881 -113595608 - L1PB4 LINE L1 0 6156 5648 299 292 108 33 chr12 30686881 30687001 -113595488 - MIR SINE MIR -114 148 20 200 189 0 0 chr12 30688185 30688222 -113594267 + (CAATT)n Simple_repeat Simple_repeat 3 39 0 2363 134 54 66 chr12 30689889 30690183 -113592306 - MER4B LTR ERV1 0 779 483 5380 136 34 54 chr12 30690183 30691276 -113591213 - MER11C LTR ERVK 0 1071 1 2363 134 54 66 chr12 30691276 30691526 -113590963 - MER4B LTR ERV1 -296 483 66 1937 156 0 3 chr12 30691526 30691836 -113590653 + AluSx SINE Alu 3 311 0 2363 134 54 66 chr12 30691836 30691902 -113590587 - MER4B LTR ERV1 -713 66 1 450 285 13 6 chr12 30693020 30693178 -113589311 + HAL1b LINE L1 381 539 -809 256 225 28 0 chr12 30693283 30693354 -113589135 + (TATG)n Simple_repeat Simple_repeat 4 76 0 4476 130 119 1 chr12 30693390 30694129 -113588360 - LTR12 LTR ERV1 0 826 1 668 231 30 50 chr12 30694289 30694588 -113587901 - pTR5 LTR ERV1 -1405 1033 741 1364 195 274 21 chr12 30694874 30695484 -113587005 - LTR50 LTR ERVL -31 764 1 973 286 33 0 chr12 30695583 30695946 -113586543 - L1ME3A LINE L1 -313 5857 5483 1953 256 72 68 chr12 30696106 30696187 -113586302 + L2 LINE L2 2272 2351 -962 1648 71 0 0 chr12 30696187 30696383 -113586106 + AluSc SINE Alu 97 292 -17 1953 256 72 68 chr12 30696383 30696837 -113585652 + L2 LINE L2 2351 2816 -497 2320 97 3 0 chr12 30696837 30697136 -113585353 - AluSg SINE Alu -10 300 1 1953 256 72 68 chr12 30697136 30697474 -113585015 + L2 LINE L2 2816 3151 -162 1206 240 42 35 chr12 30697486 30697919 -113584570 - HsTC2 DNA Tc2 -5 1893 1282 303 203 65 65 chr12 30697906 30698044 -113584445 - HsTC2 DNA Tc2 -1747 151 14 * 532 248 0 16 chr12 30698053 30698182 -113584307 + L2 LINE L2 3153 3279 -34 234 91 0 0 chr12 30698274 30698307 -113584182 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 657 219 0 0 chr12 30698751 30698874 -113583615 - FLAM_A SINE Alu -10 123 1 363 98 0 0 chr12 30699724 30699785 -113582704 + (TG)n Simple_repeat Simple_repeat 2 62 0 27 29 0 0 chr12 30699919 30699953 -113582536 + AT_rich Low_complexity Low_complexity 1 34 0 1313 205 124 54 chr12 30700194 30700564 -113581925 - MSTD LTR MaLR 0 396 1 6819 209 73 43 chr12 30700564 30702246 -113580243 - MSTD-int LTR MaLR 0 1735 4 1567 227 67 8 chr12 30702250 30702624 -113579865 - MSTD LTR MaLR 0 396 1 289 345 134 18 chr12 30705149 30705320 -113577169 + MIR SINE MIR 53 243 -19 235 132 0 0 chr12 30705320 30705358 -113577131 + U3 snRNA snRNA 1 38 -179 26 30 0 0 chr12 30705469 30705502 -113576987 + AT_rich Low_complexity Low_complexity 1 33 0 2738 107 13 2 chr12 30705502 30705896 -113576593 - L1PA15 LINE L1 0 6165 5768 418 246 24 24 chr12 30706036 30706162 -113576327 - LTR67 LTR ERVL 0 557 432 255 316 126 0 chr12 30706716 30706811 -113575678 + L2 LINE L2 3160 3266 -6 2411 77 0 0 chr12 30708557 30708854 -113573635 - AluY SINE Alu -14 297 1 28 29 0 0 chr12 30709037 30709072 -113573417 + AT_rich Low_complexity Low_complexity 1 35 0 207 250 0 19 chr12 30710222 30710274 -113572215 + MER5A DNA MER1_type 45 95 -94 287 50 0 0 chr12 30710609 30710649 -113571840 - L1MA9 LINE L1 -41 6271 6232 337 180 16 0 chr12 30710654 30710715 -113571774 + Tigger5 DNA MER2_type 8 69 -2254 370 241 0 0 chr12 30710720 30710799 -113571690 - Tigger5 DNA MER2_type -3 2320 2242 * 406 205 0 12 chr12 30710789 30710872 -113571617 + Tigger5 DNA MER2_type 2242 2323 0 653 246 39 26 chr12 30710884 30711116 -113571373 - L1MA9 LINE L1 -89 6223 5989 213 327 0 0 chr12 30711128 30711180 -113571309 + polypyrimidine Low_complexity Low_complexity 3 54 0 231 118 0 0 chr12 30711320 30711354 -113571135 + L2 LINE L2 3271 3304 -9 2013 253 61 67 chr12 30711404 30712324 -113570165 + HAL1 LINE L1 863 1778 -729 1809 116 9 55 chr12 30712324 30712606 -113569883 + L1PA16 LINE L1 5853 6119 -47 2436 48 3 0 chr12 30712606 30712900 -113569589 - AluY SINE Alu -12 299 5 1809 116 9 55 chr12 30712900 30712946 -113569543 + L1PA16 LINE L1 6119 6166 0 2013 253 61 67 chr12 30712946 30713107 -113569382 + HAL1 LINE L1 1778 1938 -569 365 147 15 0 chr12 30713232 30713300 -113569189 + HAL1 LINE L1 2321 2389 -118 626 291 25 20 chr12 30713556 30713759 -113568730 - MIR SINE MIR -6 256 53 1773 219 23 92 chr12 30713922 30714629 -113567860 - L1MC4 LINE L1 -571 7471 6814 40658 52 3 1 chr12 30715343 30721514 -113560975 + L1PA5 LINE L1 11 6196 0 24 53 0 0 chr12 30721525 30721563 -113560926 + AT_rich Low_complexity Low_complexity 1 38 0 364 236 160 25 chr12 30721966 30722203 -113560286 + L1M4 LINE L1 3048 3316 -2830 296 127 18 0 chr12 30723575 30723630 -113558859 + GA-rich Low_complexity Low_complexity 1 56 0 5455 122 24 7 chr12 30724602 30725636 -113556853 - L1PA13 LINE L1 -4 6159 5119 613 294 117 58 chr12 30726771 30727358 -113555131 + L2 LINE L2 2716 3313 0 4426 193 30 26 chr12 30727640 30729545 -113552944 + L1MA10 LINE L1 4411 6333 -1 495 286 199 23 chr12 30730406 30730707 -113551782 - L3 LINE CR1 -6 1571 1218 21 71 0 0 chr12 30730898 30730940 -113551549 + AT_rich Low_complexity Low_complexity 1 42 0 498 264 135 0 chr12 30731141 30731289 -113551200 + MIR SINE MIR 47 214 -48 1108 140 19 0 chr12 30731289 30731446 -113551043 - FRAM SINE Alu -19 157 1 2277 139 47 75 chr12 30731737 30731749 -113550740 + L1MA7 LINE L1 5773 5784 -507 216 0 0 0 chr12 30731749 30731773 -113550716 + (CA)n Simple_repeat Simple_repeat 2 25 0 2277 139 47 75 chr12 30731773 30732054 -113550435 + L1MA7 LINE L1 5784 6047 -244 1718 138 3 84 chr12 30732054 30732387 -113550102 - AluJb SINE Alu -2 310 5 2277 139 47 75 chr12 30732387 30732624 -113549865 + L1MA7 LINE L1 6047 6289 -2 1974 148 3 3 chr12 30732876 30733173 -113549316 - AluSx SINE Alu -15 297 1 227 276 129 35 chr12 30734381 30734551 -113547938 + L2 LINE L2 2660 2845 -469 321 297 52 71 chr12 30734669 30734824 -113547665 + L2 LINE L2 3117 3268 -4 27 29 0 0 chr12 30736879 30736913 -113545576 + AT_rich Low_complexity Low_complexity 1 34 0 690 209 50 0 chr12 30737014 30737153 -113545336 + MER21B LTR ERV1 14 159 -704 268 204 19 0 chr12 30737304 30737358 -113545131 + Tigger5 DNA MER2_type 1 55 -2268 285 155 35 0 chr12 30737414 30737472 -113545017 - Tigger5 DNA MER2_type -2235 88 29 8495 47 1 0 chr12 30737474 30738439 -113544050 - LTR5 LTR ERVK -3 966 1 370 202 0 22 chr12 30738487 30738576 -113543913 + Tigger5 DNA MER2_type 2237 2323 0 1105 188 10 0 chr12 30738587 30738795 -113543694 + MER2 DNA MER2_type 1 210 -135 3014 77 36 36 chr12 30738860 30739303 -113543186 - MLT2A1 LTR ERVL -1 443 1 17398 68 6 1 chr12 30739303 30741587 -113540902 - HERVL-A1 LTR ERVL 0 5654 3361 292 280 0 0 chr12 30741934 30742009 -113540480 - MIR SINE MIR -115 147 73 26 30 0 0 chr12 30742494 30742527 -113539962 + AT_rich Low_complexity Low_complexity 1 33 0 213 359 0 0 chr12 30743531 30743595 -113538894 - L2 LINE L2 -12 3260 3197 21 0 0 0 chr12 30743606 30743627 -113538862 + AT_rich Low_complexity Low_complexity 1 21 0 465 295 88 33 chr12 30743684 30744047 -113538442 + L1MCa LINE L1 20 402 -6024 446 215 0 48 chr12 30745014 30745067 -113537422 - MER63 DNA MER1_type -37 1651 1597 1895 127 81 19 chr12 30745067 30745390 -113537099 - MER61A LTR ERV1 0 343 1 446 215 0 48 chr12 30745390 30745452 -113537037 - MER63 DNA MER1_type -91 1597 687 1035 259 49 40 chr12 30745756 30746203 -113536286 + MLT1C LTR MaLR 1 451 -16 2012 205 93 23 chr12 30747195 30747787 -113534702 - MLT1E2 LTR MaLR -2 624 4 1716 173 14 78 chr12 30747839 30748330 -113534159 + L1M2 LINE L1 5167 5630 -682 2035 337 109 23 chr12 30748609 30749848 -113532641 + L3 LINE CR1 185 1529 -48 22 35 0 0 chr12 30750600 30750629 -113531860 + AT_rich Low_complexity Low_complexity 1 29 0 245 308 47 47 chr12 30751028 30751135 -113531354 - MIR SINE MIR -79 129 23 323 321 203 8 chr12 30752253 30752585 -113529904 - L2 LINE L2 0 3313 2876 1312 206 67 50 chr12 30753923 30754282 -113528207 - MLT1A1 LTR MaLR 0 365 1 224 328 37 74 chr12 30755223 30755412 -113527077 - MIR SINE MIR -1 261 80 226 130 78 143 chr12 30755526 30755559 -113526930 + MER5A DNA MER1_type 41 75 -114 4477 48 12 0 chr12 30755559 30756119 -113526370 + L1PA7 LINE L1 5588 6154 0 226 130 78 143 chr12 30756119 30756162 -113526327 + MER5A DNA MER1_type 75 112 -77 1972 118 0 14 chr12 30756166 30756500 -113525989 - AluY SINE Alu 0 330 1 219 224 69 17 chr12 30756775 30756833 -113525656 - L2 LINE L2 -4 3268 3208 1969 115 6 88 chr12 30757261 30757601 -113524888 + AluSx SINE Alu 1 312 0 425 187 131 24 chr12 30758183 30758329 -113524160 - L1ME2 LINE L1 -3 6331 6012 206 229 0 0 chr12 30758815 30758863 -113523626 - MIR SINE MIR 0 262 215 720 242 45 54 chr12 30758881 30759078 -113523411 + MIR SINE MIR 12 208 -54 6866 25 4 1 chr12 30759078 30759892 -113522597 + L1PA3 LINE L1 5340 6155 0 720 242 45 54 chr12 30759892 30759917 -113522572 + MIR SINE MIR 208 232 -30 5223 211 37 28 chr12 30760383 30762469 -113520020 + L1MB8 LINE L1 4040 6162 -16 1872 280 33 23 chr12 30762489 30763388 -113519101 + L1M4 LINE L1 2248 3155 -2991 224 219 16 31 chr12 30763426 30763490 -113518999 + MIR SINE MIR 200 262 0 451 302 58 0 chr12 30763663 30763852 -113518637 - MIR SINE MIR -6 256 57 334 324 74 6 chr12 30765890 30766066 -113516423 + MER5A DNA MER1_type 2 189 0 207 265 73 0 chr12 30766329 30766397 -113516092 - MIR SINE MIR -138 124 52 505 139 0 0 chr12 30767320 30767399 -113515090 - L1MA2 LINE L1 -14 6290 6212 2066 199 13 55 chr12 30767527 30768055 -113514434 - L1MB8 LINE L1 -6 6172 5667 1942 141 6 28 chr12 30768354 30768673 -113513816 - AluSx SINE Alu 0 312 1 234 0 0 0 chr12 30770334 30770360 -113512129 + (TG)n Simple_repeat Simple_repeat 1 26 0 995 192 29 0 chr12 30771027 30771235 -113511254 + L1PA16 LINE L1 5947 6160 -6 187 326 114 8 chr12 30772205 30772337 -113510152 + MIR3 SINE MIR 3 148 -60 292 319 99 0 chr12 30772538 30772629 -113509860 + MIR SINE MIR 29 128 -80 228 86 0 0 chr12 30773763 30773798 -113508691 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr12 30774642 30774663 -113507826 + AT_rich Low_complexity Low_complexity 1 21 0 334 182 0 15 chr12 30775120 30775186 -113507303 - MER103 DNA DNA -98 68 4 264 30 0 0 chr12 30776882 30776915 -113505574 + (ATTG)n Simple_repeat Simple_repeat 3 35 0 32 57 0 0 chr12 30777441 30777494 -113504995 + AT_rich Low_complexity Low_complexity 1 53 0 288 305 86 9 chr12 30778428 30778533 -113503956 - MIR SINE MIR -50 212 100 22 56 0 0 chr12 30778535 30778571 -113503918 + AT_rich Low_complexity Low_complexity 1 36 0 1905 158 117 28 chr12 30778852 30779245 -113503244 + MSTA LTR MaLR 1 428 0 21 36 0 0 chr12 30779520 30779548 -113502941 + AT_rich Low_complexity Low_complexity 1 28 0 4815 39 2 0 chr12 30780286 30780873 -113501616 - L1P LINE L1 -1189 4957 4370 * 14572 33 11 1 chr12 30780857 30782652 -113499837 + L1P LINE L1 2535 4348 -1798 2013 138 7 0 chr12 30784196 30784492 -113497997 - AluSx SINE Alu -12 300 3 207 0 0 0 chr12 30785304 30785327 -113497162 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2108 114 31 44 chr12 30786393 30786519 -113495970 - THE1A LTR MaLR 0 355 229 1528 88 0 37 chr12 30786519 30786736 -113495753 - AluSc SINE Alu -4 305 97 2108 114 31 44 chr12 30786736 30786969 -113495520 - THE1A LTR MaLR -126 229 1 7533 28 0 0 chr12 30787363 30788285 -113494204 - L1PA4 LINE L1 0 6155 5235 508 274 84 71 chr12 30788378 30788820 -113493669 + MLT1G1 LTR MaLR 113 589 -6 280 213 107 25 chr12 30790143 30790265 -113492224 - L1ME4a LINE L1 -17 6104 5973 903 202 12 0 chr12 30790401 30790574 -113491915 - L1MC1 LINE L1 0 6333 6159 1358 261 67 13 chr12 30790574 30790950 -113491539 + MSTD LTR MaLR 1 396 0 2682 167 59 25 chr12 30790951 30791509 -113490980 - L1MC1 LINE L1 -171 6162 5586 1336 194 14 48 chr12 30791523 30791812 -113490677 - MSTB2 LTR MaLR 0 457 179 2730 224 62 16 chr12 30791812 30792638 -113489851 - L1MC1 LINE L1 -784 5362 4499 1653 173 24 32 chr12 30792638 30792725 -113489764 - MER44D DNA MER2_type -1883 608 522 2055 149 43 0 chr12 30792725 30793074 -113489415 - MER47A DNA MER2_type -1 365 2 1653 173 24 32 chr12 30793074 30793327 -113489162 - MER44D DNA MER2_type -1969 522 1 1291 267 21 16 chr12 30793327 30793754 -113488735 - L1MC1 LINE L1 -1645 4501 4073 3373 79 7 5 chr12 30793927 30794370 -113488119 + MLT2A1 LTR ERVL 1 444 0 1333 209 90 8 chr12 30794742 30795010 -113487479 - AluJo SINE Alu -12 290 1 210 286 63 0 chr12 30796587 30796650 -113485839 - L2 LINE L2 -3 3310 3244 1003 249 39 50 chr12 30796660 30796997 -113485492 - MER87 LTR ERV1 0 541 209 201 355 95 41 chr12 30797162 30797500 -113484989 - L2 LINE L2 -90 3182 2827 1439 190 116 52 chr12 30797708 30798155 -113484334 - MLT1D LTR MaLR -29 476 1 246 229 16 0 chr12 30798617 30798678 -113483811 + HsTC2 DNA Tc2 1 62 -1836 258 32 0 0 chr12 30798708 30798739 -113483750 + (TC)n Simple_repeat Simple_repeat 2 32 0 1796 224 41 20 chr12 30798901 30799391 -113483098 + MLT1D LTR MaLR 6 505 0 279 79 0 0 chr12 30799653 30799691 -113482798 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 1484 134 47 83 chr12 30799699 30799975 -113482514 - AluSx SINE Alu -44 268 3 190 326 81 12 chr12 30800285 30800371 -113482118 - MIR SINE MIR -14 248 157 1946 189 43 28 chr12 30800626 30801049 -113481440 + MSTB1 LTR MaLR 4 432 0 264 358 21 0 chr12 30802067 30802162 -113480327 + L2 LINE L2 2963 3059 -213 23 0 0 0 chr12 30802918 30802941 -113479548 + AT_rich Low_complexity Low_complexity 1 23 0 1409 98 23 5 chr12 30802953 30803168 -113479321 - L1MA1 LINE L1 -9 6293 6075 266 313 38 69 chr12 30803349 30803480 -113479009 - MIR SINE MIR -124 138 12 402 286 29 29 chr12 30803971 30804111 -113478378 + L2 LINE L2 3174 3313 0 2420 162 37 46 chr12 30804457 30804939 -113477550 - MLT2B2 LTR ERVL -35 480 3 647 252 82 24 chr12 30805002 30805208 -113477281 - MIR SINE MIR -24 238 21 192 304 18 0 chr12 30805685 30805741 -113476748 + MIR SINE MIR 49 105 -157 259 188 47 0 chr12 30806661 30806725 -113475764 - MIR SINE MIR -93 169 103 216 184 0 0 chr12 30807666 30807704 -113474785 + (ATG)n Simple_repeat Simple_repeat 3 40 0 1204 317 74 54 chr12 30807758 30808141 -113474348 - MER115 DNA AcHobo -9 684 281 2166 136 21 21 chr12 30808141 30808516 -113473973 + THE1C LTR MaLR 1 375 0 1204 317 74 54 chr12 30808516 30808794 -113473695 - MER115 DNA AcHobo -412 281 10 409 243 171 44 chr12 30808801 30808982 -113473507 - MIR SINE MIR -54 208 5 1824 176 67 11 chr12 30809033 30809408 -113473081 + MSTD LTR MaLR 1 396 0 351 243 90 9 chr12 30810513 30810624 -113471865 + L1MC4 LINE L1 7596 7715 -327 351 208 46 66 chr12 30810711 30810847 -113471642 + L1MC4 LINE L1 7881 7994 -1 8887 191 33 44 chr12 30811281 30813490 -113468999 + L1MDa LINE L1 18 2200 -4340 214 184 0 0 chr12 30813627 30813665 -113468824 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 264 111 0 0 chr12 30814543 30814588 -113467901 + (CA)n Simple_repeat Simple_repeat 2 46 0 201 292 97 56 chr12 30816407 30816479 -113466010 - MIR SINE MIR -166 96 22 211 248 143 29 chr12 30816686 30816791 -113465698 + L2 LINE L2 3188 3304 -9 588 194 0 0 chr12 30817265 30817363 -113465126 - FLAM_A SINE Alu -16 126 29 188 362 0 0 chr12 30817612 30817670 -113464819 - MIR SINE MIR -142 120 63 517 278 106 9 chr12 30818406 30818873 -113463616 + MLT1G1 LTR MaLR 1 595 0 22 0 0 0 chr12 30818903 30818925 -113463564 + AT_rich Low_complexity Low_complexity 1 22 0 1460 185 40 25 chr12 30819467 30819792 -113462697 + MLT1A2 LTR MaLR 45 374 0 186 176 0 0 chr12 30821364 30821415 -113461074 + (CA)n Simple_repeat Simple_repeat 2 52 0 364 280 24 0 chr12 30821434 30821559 -113460930 + (CA)n Simple_repeat Simple_repeat 1 128 0 354 349 6 0 chr12 30821608 30821783 -113460706 + (CA)n Simple_repeat Simple_repeat 1 176 0 25 0 0 0 chr12 30821948 30821973 -113460516 + AT_rich Low_complexity Low_complexity 1 25 0 197 218 127 0 chr12 30822577 30822632 -113459857 + L2 LINE L2 2994 3055 -217 27 0 0 0 chr12 30823668 30823695 -113458794 + AT_rich Low_complexity Low_complexity 1 27 0 635 275 87 29 chr12 30823758 30824109 -113458380 - MER57A LTR ERV1 -6 397 43 1863 86 92 67 chr12 30824133 30824533 -113457956 + LTR14B LTR ERVK 6 608 0 343 167 40 79 chr12 30824940 30825066 -113457423 - L1MB5 LINE L1 -1 6173 6053 23 0 0 0 chr12 30825804 30825827 -113456662 + AT_rich Low_complexity Low_complexity 1 23 0 1369 142 4 16 chr12 30826053 30826307 -113456182 - Tigger4(Zombi) DNA MER2_type 0 2731 2481 851 137 7 34 chr12 30826308 30826454 -113456035 + FLAM_C SINE Alu 1 142 -1 4383 126 3 3 chr12 30826454 30827153 -113455336 - Tigger4(Zombi) DNA MER2_type -244 2487 1789 * 7929 131 32 66 chr12 30827151 30828674 -113453815 - Tigger4(Zombi) DNA MER2_type -1259 1472 1 658 91 27 0 chr12 30829139 30829249 -113453240 + L1MCa LINE L1 663 775 -5651 2963 130 26 2 chr12 30829259 30829788 -113452701 + L1MCa LINE L1 857 1398 -5028 1198 213 49 55 chr12 30829791 30829954 -113452535 - MER50 LTR ERV1 0 734 572 2508 71 0 0 chr12 30829954 30830264 -113452225 + AluY SINE Alu 1 310 -1 1198 213 49 55 chr12 30830264 30830447 -113452042 - MER50 LTR ERV1 -162 572 390 187 231 58 19 chr12 30830755 30830807 -113451682 - MIR SINE MIR -70 192 139 231 286 0 14 chr12 30831766 30831836 -113450653 + MIR3 SINE MIR 137 205 -3 367 376 25 6 chr12 30831978 30832140 -113450349 - MIR SINE MIR -78 184 20 558 143 76 0 chr12 30832422 30832541 -113449948 - L1P LINE L1 -877 5269 5142 3800 142 70 21 chr12 30832541 30833146 -113449343 + L1PA16 LINE L1 5391 6039 -127 2299 115 126 5 chr12 30833146 30833528 -113448961 - MSTA LTR MaLR 0 428 1 3800 142 70 21 chr12 30833528 30833663 -113448826 + L1PA16 LINE L1 6039 6166 0 837 298 81 30 chr12 30834260 30834629 -113447860 - L2 LINE L2 0 3313 2926 1279 230 12 33 chr12 30834821 30835152 -113447337 - MLT2D LTR ERVL 0 414 91 1792 177 11 34 chr12 30836444 30836658 -113445831 + MER7A DNA MER2_type 1 218 -2820 2443 106 43 3 chr12 30836658 30837006 -113445483 - THE1B LTR MaLR -2 362 1 9405 131 63 10 chr12 30837006 30838507 -113443982 - THE1B-int LTR MaLR 0 1580 1 2471 132 3 3 chr12 30838507 30838871 -113443618 - THE1B LTR MaLR 0 364 1 1792 177 11 34 chr12 30838871 30839010 -113443479 + MER7A DNA MER2_type 215 346 0 189 0 0 0 chr12 30839385 30839406 -113443083 + (A)n Simple_repeat Simple_repeat 1 21 0 1658 176 36 15 chr12 30839999 30840328 -113442161 + MLT2C1 LTR ERVL 1 336 -61 324 0 0 0 chr12 30840328 30840364 -113442125 + (TC)n Simple_repeat Simple_repeat 1 36 0 252 0 0 0 chr12 30840363 30840391 -113442098 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 27 29 0 0 chr12 30841420 30841454 -113441035 + AT_rich Low_complexity Low_complexity 1 34 0 630 328 92 10 chr12 30841523 30841816 -113440673 - L3b LINE CR1 -87 1496 1180 601 196 18 0 chr12 30841830 30841942 -113440547 - FLAM_C SINE Alu -22 121 8 2268 69 0 0 chr12 30842811 30843100 -113439389 - L1PA7 LINE L1 -15 6139 5851 357 62 0 0 chr12 30843302 30843350 -113439139 + (TG)n Simple_repeat Simple_repeat 2 49 0 198 103 0 0 chr12 30843757 30843786 -113438703 + (T)n Simple_repeat Simple_repeat 1 29 0 743 190 36 41 chr12 30844402 30844597 -113437892 + L1ME LINE L1 5392 5585 -579 2443 278 172 25 chr12 30844597 30845814 -113436675 - L2 LINE L2 -711 2603 1209 480 133 0 0 chr12 30847180 30847263 -113435226 + (TGGA)n Simple_repeat Simple_repeat 3 85 0 461 240 47 0 chr12 30848291 30848441 -113434048 + L1M4 LINE L1 4464 4620 -1526 577 211 56 0 chr12 30848597 30848739 -113433750 - MLT1B LTR MaLR 0 390 241 304 39 20 20 chr12 30848742 30848793 -113433696 + (TTTTA)n Simple_repeat Simple_repeat 4 54 0 26048 33 7 4 chr12 30848793 30852914 -113429575 - L1PA3 LINE L1 -16 6139 2006 853 270 194 8 chr12 30853003 30853438 -113429051 + L2 LINE L2 2801 3311 -2 2131 141 0 6 chr12 30854174 30854486 -113428003 - AluSx SINE Alu -2 310 1 692 281 12 6 chr12 30854896 30855063 -113427426 + MER5A DNA MER1_type 1 168 -21 1003 294 10 17 chr12 30855153 30855445 -113427044 - L2 LINE L2 -5 3308 3019 1305 193 130 25 chr12 30855969 30856322 -113426167 + MLT1B LTR MaLR 1 390 0 27 0 0 0 chr12 30856697 30856724 -113425765 + AT_rich Low_complexity Low_complexity 1 27 0 218 279 0 0 chr12 30856895 30856938 -113425551 - L2 LINE L2 -256 3057 3015 195 335 126 16 chr12 30857264 30857446 -113425043 - L2 LINE L2 -1729 1585 1384 204 329 26 0 chr12 30857699 30857775 -113424714 + L3 LINE CR1 1476 1553 -24 22 56 0 0 chr12 30858030 30858066 -113424423 + AT_rich Low_complexity Low_complexity 1 36 0 1495 236 76 39 chr12 30858490 30859160 -113423329 + L1MC5 LINE L1 7232 7926 -35 957 185 0 0 chr12 30859417 30859595 -113422894 + MLT2B2 LTR ERVL 6 183 -332 999 190 10 77 chr12 30859707 30860119 -113422370 + MLT2B2 LTR ERVL 186 515 0 195 42 0 0 chr12 30860311 30860335 -113422154 + (T)n Simple_repeat Simple_repeat 1 24 0 289 200 45 2 chr12 30861383 30861449 -113421040 + AluSq/x SINE Alu 47 107 -195 374 232 65 77 chr12 30861740 30861895 -113420594 - MIR3 SINE MIR -40 168 16 190 194 0 0 chr12 30862705 30862741 -113419748 + MER5A DNA MER1_type 55 90 -99 556 179 229 0 chr12 30862748 30862888 -113419601 + MER5A DNA MER1_type 18 189 0 203 237 0 51 chr12 30863025 30863084 -113419405 - MIR SINE MIR -10 252 197 282 313 54 45 chr12 30863084 30863135 -113419354 - L2 LINE L2 -14 3256 3146 1648 177 31 6 chr12 30863143 30863465 -113419024 - MER58B DNA MER1_type 0 341 12 839 304 84 56 chr12 30864168 30864730 -113417759 - L2 LINE L2 -267 3005 2423 243 242 34 0 chr12 30865458 30865523 -113416966 + MIR SINE MIR 80 140 -68 2047 133 10 0 chr12 30866788 30867081 -113415408 - AluSc SINE Alu -11 298 3 5319 80 104 4 chr12 30867326 30868075 -113414414 - LTR12 LTR ERV1 0 826 3 2511 88 95 2 chr12 30868075 30868474 -113414015 + LTR7 LTR ERV1 13 448 -2 12453 206 83 68 chr12 30868476 30873547 -113408942 + HERVH LTR ERV1 1 5149 -2564 1291 124 18 5 chr12 30873548 30873765 -113408724 + HERVH LTR ERV1 5600 5819 -1894 2180 87 46 44 chr12 30873765 30874154 -113408335 + HERVH LTR ERV1 7324 7713 0 3003 87 4 32 chr12 30874154 30874615 -113407874 + LTR7 LTR ERV1 1 448 -2 1473 221 65 15 chr12 30874782 30875185 -113407304 - MER50 LTR ERV1 -311 423 1 474 167 133 0 chr12 30875185 30875305 -113407184 + L1MCa LINE L1 1423 1558 -4868 2275 110 0 3 chr12 30875339 30875647 -113406842 + AluSc SINE Alu 1 307 -2 204 216 0 0 chr12 30875662 30875700 -113406789 + (CATA)n Simple_repeat Simple_repeat 1 38 0 1340 190 123 46 chr12 30875729 30876080 -113406409 - MLT2B1 LTR ERVL -25 529 103 3257 246 31 12 chr12 30876087 30877216 -113405273 + L1MCa LINE L1 2388 3498 -2928 1023 171 42 73 chr12 30877286 30877862 -113404627 + MER4C LTR ERV1 1 430 -35 2102 138 0 0 chr12 30878047 30878343 -113404146 + AluSx SINE Alu 2 297 -15 597 259 18 29 chr12 30878683 30878853 -113403636 + MIR SINE MIR 21 188 -74 1244 73 28 0 chr12 30878916 30879094 -113403395 - L1PA8 LINE L1 -226 5928 5746 1692 81 0 0 chr12 30879094 30879307 -113403182 + L1PA8 LINE L1 5948 6170 -2 2066 130 30 3 chr12 30880297 30880596 -113401893 - AluSg SINE Alu -3 307 1 335 265 92 0 chr12 30881688 30881786 -113400703 - MIR SINE MIR -30 232 126 243 392 82 10 chr12 30882688 30882882 -113399607 + L2 LINE L2 2926 3133 -139 314 277 124 15 chr12 30882970 30883107 -113399382 - MIR SINE MIR -76 186 35 202 317 57 24 chr12 30883200 30883323 -113399166 + L2 LINE L2 3141 3267 -5 338 269 43 64 chr12 30884375 30884516 -113397973 - MIR3 SINE MIR -69 139 2 371 307 131 11 chr12 30884651 30884827 -113397662 - MIR SINE MIR -17 245 49 251 348 68 38 chr12 30885419 30885655 -113396834 - L2 LINE L2 -357 2957 2715 181 283 192 50 chr12 30886149 30886269 -113396220 - MIR SINE MIR -75 187 51 833 233 19 27 chr12 30886603 30886865 -113395624 - MIR SINE MIR 0 262 3 201 319 9 53 chr12 30887083 30887196 -113395293 - L2 LINE L2 -4 3309 3202 685 278 52 4 chr12 30887239 30887487 -113395002 - MIR SINE MIR 0 262 3 1082 216 42 86 chr12 30887803 30888234 -113394255 + L1ME1 LINE L1 5723 6134 -32 548 198 8 8 chr12 30888239 30888365 -113394124 + L1MC4a LINE L1 7569 7694 -114 475 218 113 85 chr12 30888812 30889060 -113393429 + L1MEc LINE L1 146 400 -5996 22 0 0 0 chr12 30889160 30889182 -113393307 + AT_rich Low_complexity Low_complexity 1 22 0 2042 158 27 32 chr12 30889862 30890415 -113392074 - MLT2A2 LTR ERVL 0 554 8 232 319 186 9 chr12 30891370 30891483 -113391006 + MER91A DNA MER1_type 42 174 -22 3478 234 63 35 chr12 30892746 30894883 -113387606 - L1ME2 LINE L1 -119 6045 3843 268 325 84 44 chr12 30895043 30895292 -113387197 + L2 LINE L2 1855 2113 -1201 479 201 58 7 chr12 30895423 30895577 -113386912 + L1M4 LINE L1 4322 4483 -1663 271 331 37 25 chr12 30896992 30897155 -113385334 + L2 LINE L2 2656 2820 -494 193 265 0 128 chr12 30897161 30897263 -113385226 + L2 LINE L2 3133 3221 -51 203 161 0 0 chr12 30897273 30897304 -113385185 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 192 152 0 0 chr12 30898299 30898332 -113384157 + CT-rich Low_complexity Low_complexity 2 34 0 195 100 0 0 chr12 30898345 30898375 -113384114 + (TTG)n Simple_repeat Simple_repeat 1 30 0 957 102 24 0 chr12 30899057 30899184 -113383305 + AluY SINE Alu 3 132 -179 234 321 100 14 chr12 30899746 30899775 -113382714 - L2 LINE L2 0 3272 3247 2305 75 0 0 chr12 30899775 30900079 -113382410 + AluY SINE Alu 3 306 0 234 321 100 14 chr12 30900079 30900188 -113382301 - L2 LINE L2 -25 3247 3121 189 256 0 0 chr12 30900465 30900504 -113381985 - MIR3 SINE MIR -28 180 142 478 254 33 103 chr12 30901266 30901479 -113381010 + MIR SINE MIR 31 228 -34 23 0 0 0 chr12 30902585 30902608 -113379881 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr12 30903096 30903121 -113379368 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 372 277 56 38 chr12 30903483 30903696 -113378793 + Charlie2 DNA MER1_type 107 323 -2459 448 194 164 67 chr12 30903745 30904013 -113378476 + Charlie2 DNA MER1_type 1903 2196 -666 923 243 74 8 chr12 30904066 30904309 -113378180 - MIR SINE MIR -3 259 1 464 226 87 20 chr12 30904349 30904601 -113377888 + Charlie2 DNA MER1_type 2356 2624 -238 856 178 6 6 chr12 30904702 30904859 -113377630 - FRAM SINE Alu -9 157 1 8798 232 43 37 chr12 30904880 30907507 -113374982 - L1ME1 LINE L1 -5 6230 3598 2200 142 52 32 chr12 30907507 30907950 -113374539 - L1MA8 LINE L1 -5 6286 5835 8798 232 43 37 chr12 30907950 30909512 -113372977 - L1ME1 LINE L1 -2637 3598 2047 204 247 91 26 chr12 30911115 30911192 -113371297 - MIR3 SINE MIR -25 183 102 182 345 18 0 chr12 30911285 30911340 -113371149 + MER5A DNA MER1_type 54 109 -80 495 287 208 10 chr12 30911427 30911629 -113370860 + MIR SINE MIR 21 262 0 2157 72 45 0 chr12 30911674 30911964 -113370525 - AluY SINE Alu -8 303 1 2424 183 38 35 chr12 30912645 30912963 -113369526 - MER90 LTR ERV1 0 614 292 2446 82 0 7 chr12 30912963 30913266 -113369223 + AluSp SINE Alu 1 301 -12 2424 183 38 35 chr12 30913266 30913527 -113368962 - MER90 LTR ERV1 -322 292 33 476 326 38 5 chr12 30913729 30913913 -113368576 + LTR33 LTR ERVL 3 192 -329 7236 100 179 79 chr12 30914021 30915590 -113366899 - pTR5 LTR ERV1 0 2438 375 330 173 29 0 chr12 30916823 30916927 -113365562 + (TA)n Simple_repeat Simple_repeat 1 107 0 2311 107 10 0 chr12 30916927 30917236 -113365253 - AluSq SINE Alu 0 313 2 2674 132 18 81 chr12 30917305 30917798 -113364691 - L1PA16 LINE L1 -2 6164 5703 2182 131 3 0 chr12 30917981 30918278 -113364211 - AluSx SINE Alu -14 298 1 195 42 0 0 chr12 30918401 30918425 -113364064 + (CAA)n Simple_repeat Simple_repeat 3 26 0 6001 35 0 0 chr12 30919262 30919924 -113362565 - L1PA5 LINE L1 0 6154 5493 333 230 16 8 chr12 30920217 30920310 -113362179 + MIR SINE MIR 100 192 -70 255 295 170 17 chr12 30920697 30920860 -113361629 + MIR SINE MIR 16 196 -66 473 273 63 0 chr12 30920956 30921099 -113361390 - MIR SINE MIR -74 188 37 561 276 140 19 chr12 30923051 30923265 -113359224 + MIR SINE MIR 15 254 -8 1444 181 47 34 chr12 30923273 30923594 -113358895 + MLT2C1 LTR ERVL 5 329 -68 1644 161 46 7 chr12 30923607 30923887 -113358602 + AluJb SINE Alu 1 291 -21 1137 138 69 0 chr12 30923898 30924087 -113358402 + MER82 DNA MER2_type 2 203 -450 4169 101 14 3 chr12 30924266 30924851 -113357638 - L1MA1 LINE L1 0 6302 5712 242 306 0 0 chr12 30924874 30924946 -113357543 - Tigger2 DNA MER2_type -1604 1114 1043 234 0 0 0 chr12 30925061 30925087 -113357402 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 2107 203 30 15 chr12 30925232 30925636 -113356853 + MER82 DNA MER2_type 199 608 -45 1408 154 12 20 chr12 30925637 30925890 -113356599 + LTR1 LTR ERV1 1 251 -534 271 224 0 0 chr12 30925881 30925939 -113356550 + LTR1 LTR ERV1 201 258 -527 * 3417 129 10 48 chr12 30925929 30926533 -113355956 + LTR1 LTR ERV1 205 785 0 243 196 78 0 chr12 30926533 30926578 -113355911 + MER82 DNA MER2_type 602 650 -3 1358 307 118 6 chr12 30927763 30928833 -113353656 - L2 LINE L2 -6 3307 2098 955 228 70 21 chr12 30928837 30929265 -113353224 + MLT1F LTR MaLR 2 533 -9 1186 311 65 8 chr12 30929335 30929856 -113352633 - L2 LINE L2 -1945 1369 819 449 247 220 63 chr12 30929902 30929966 -113352523 - MIR SINE MIR -3 259 206 2129 144 0 0 chr12 30929966 30930272 -113352217 + AluSx SINE Alu 1 306 -6 449 247 220 63 chr12 30930272 30930430 -113352059 - MIR SINE MIR -56 206 2 33 0 0 0 chr12 30931471 30931504 -113350985 + AT_rich Low_complexity Low_complexity 1 33 0 337 331 30 24 chr12 30932281 30932450 -113350039 + MIR SINE MIR 28 197 -65 388 241 121 109 chr12 30932652 30932854 -113349635 - MIR SINE MIR 0 262 55 2407 94 0 0 chr12 30932854 30933152 -113349337 - AluSc SINE Alu -11 298 1 388 241 121 109 chr12 30933152 30933206 -113349283 - MIR SINE MIR -207 55 3 5860 152 10 12 chr12 30935908 30937464 -113345025 + L1PA15 LINE L1 4594 6144 -21 1086 87 13 0 chr12 30938641 30938790 -113343699 - AluSc SINE Alu -6 303 153 1203 51 38 25 chr12 30939187 30939344 -113343145 - AluSc SINE Alu -150 159 1 658 280 16 10 chr12 30939351 30939544 -113342945 - MIR SINE MIR -56 206 13 195 42 0 0 chr12 30939573 30939597 -113342892 + (A)n Simple_repeat Simple_repeat 1 24 0 2441 143 55 55 chr12 30939605 30939865 -113342624 + Tigger2a DNA MER2_type 1 263 -2445 1850 100 36 0 chr12 30939865 30940116 -113342373 + AluY SINE Alu 35 294 -17 2441 143 55 55 chr12 30940116 30940289 -113342200 + Tigger2a DNA MER2_type 262 434 0 43 0 0 0 chr12 30941880 30941923 -113340566 + AT_rich Low_complexity Low_complexity 1 43 0 1582 167 28 28 chr12 30942041 30942328 -113340161 - AluJo SINE Alu -24 288 2 1145 268 158 79 chr12 30942344 30943378 -113339111 + L1MCc LINE L1 144 1258 -5165 3108 251 90 29 chr12 30943387 30944526 -113337963 + L1MCc LINE L1 1610 2842 -4099 2690 156 39 0 chr12 30944526 30944936 -113337553 + MSTB LTR MaLR 1 426 0 3108 251 90 29 chr12 30944936 30945423 -113337066 + L1MCc LINE L1 2842 3298 -3643 26 0 0 0 chr12 30946059 30946085 -113336404 + AT_rich Low_complexity Low_complexity 1 26 0 2324 121 116 10 chr12 30946199 30946586 -113335903 - MSTA LTR MaLR 0 428 1 322 247 11 34 chr12 30947025 30947114 -113335375 + L2 LINE L2 3227 3313 0 1535 194 20 78 chr12 30947772 30948169 -113334320 + MLT1A2 LTR MaLR 1 374 0 488 343 73 5 chr12 30948242 30948446 -113334043 - MIR SINE MIR -40 222 5 337 343 36 0 chr12 30948834 30949000 -113333489 + MIR SINE MIR 67 238 -24 352 354 82 5 chr12 30949059 30949254 -113333235 + L2 LINE L2 3101 3310 -3 723 98 20 0 chr12 30949642 30949744 -113332745 - L1MC1 LINE L1 -3 6330 6227 314 273 59 80 chr12 30950475 30950662 -113331827 - MARNA DNA Mariner -330 256 74 291 258 93 119 chr12 30951354 30951441 -113331048 + LTR16A LTR ERVL 16 104 -346 988 191 0 0 chr12 30951441 30951598 -113330891 + FRAM SINE Alu 1 157 -9 291 258 93 119 chr12 30951598 30951704 -113330785 + LTR16A LTR ERVL 104 204 -246 241 259 74 0 chr12 30951712 30951793 -113330696 + LTR16A LTR ERVL 364 450 0 1940 270 54 59 chr12 30951795 30952521 -113329968 + HERV16 LTR ERVL 3 724 -4272 1986 273 61 24 chr12 30952531 30953767 -113328722 + HERV16 LTR ERVL 832 2224 -2772 2242 327 73 33 chr12 30953790 30954112 -113328377 + ERVL LTR ERVL 3742 4050 -946 2475 68 0 0 chr12 30954112 30954408 -113328081 + AluY SINE Alu 1 296 -15 2242 327 73 33 chr12 30954408 30954916 -113327573 + ERVL LTR ERVL 4050 4165 -831 1812 133 13 40 chr12 30954916 30955218 -113327271 - AluSg1 SINE Alu -15 294 1 2242 327 73 33 chr12 30955218 30955992 -113326497 + ERVL LTR ERVL 4165 4906 -90 2065 130 0 10 chr12 30956060 30956367 -113326122 + AluSg SINE Alu 1 304 -6 1299 236 65 40 chr12 30956394 30956793 -113325696 + LTR16A LTR ERVL 22 430 -20 1658 239 59 20 chr12 30958642 30959110 -113323379 - MLT1H LTR MaLR 0 549 19 21 36 0 0 chr12 30959171 30959199 -113323290 + AT_rich Low_complexity Low_complexity 1 28 0 21 95 0 0 chr12 30959366 30959429 -113323060 + AT_rich Low_complexity Low_complexity 1 63 0 549 216 62 56 chr12 30959752 30959914 -113322575 + MLT1G LTR MaLR 428 590 0 4377 131 174 20 chr12 30961258 30962256 -113320233 + pTR5 LTR ERV1 738 2024 -414 382 224 10 0 chr12 30962257 30962355 -113320134 + LTR30 LTR ERV1 544 642 -80 2878 13 0 0 chr12 30962372 30962683 -113319806 - AluYa5 SINE Alu 0 311 1 1534 104 5 5 chr12 30962687 30962908 -113319581 + pTR5 LTR ERV1 172 392 -2046 294 188 135 62 chr12 30963335 30963431 -113319058 + L2 LINE L2 3170 3272 0 2317 216 132 51 chr12 30964228 30964769 -113317720 - Charlie2a DNA MER1_type -1 2861 2365 1673 180 80 37 chr12 30964769 30965119 -113317370 - MLT1A1 LTR MaLR 0 365 1 2317 216 132 51 chr12 30965119 30965258 -113317231 - Charlie2a DNA MER1_type -497 2365 2239 3893 132 0 4 chr12 30965258 30965787 -113316702 + MER1A DNA MER1_type 1 527 0 2317 216 132 51 chr12 30965787 30966121 -113316368 - Charlie2a DNA MER1_type -623 2239 1764 325 138 0 35 chr12 30966162 30966220 -113316269 - LTR40a LTR ERVL -373 146 91 815 189 11 28 chr12 30966286 30966466 -113316023 - Charlie2a DNA MER1_type -1204 1658 1482 890 259 128 54 chr12 30966494 30966922 -113315567 - Charlie2a DNA MER1_type -2310 472 13 1894 89 67 0 chr12 30967680 30967949 -113314540 - L1MA2 LINE L1 0 6304 6018 609 111 32 56 chr12 30967954 30968080 -113314409 - L1MA2 LINE L1 -204 6100 5978 648 238 41 54 chr12 30969880 30970174 -113312315 + L1ME4a LINE L1 5580 5869 -252 295 212 122 108 chr12 30970291 30970569 -113311920 + L1ME4a LINE L1 5837 6118 -3 564 307 135 41 chr12 30971184 30971620 -113310869 + L3 LINE CR1 117 593 -984 246 62 0 0 chr12 30971747 30971779 -113310710 + (CA)n Simple_repeat Simple_repeat 2 33 0 661 328 71 35 chr12 30971781 30972244 -113310245 + L2 LINE L2 2450 2929 -385 1098 264 113 43 chr12 30972432 30972902 -113309587 - L2 LINE L2 -2 3311 2809 222 292 15 0 chr12 30973354 30973419 -113309070 + L2 LINE L2 3248 3313 0 253 319 11 11 chr12 30973754 30973848 -113308641 + GA-rich Low_complexity Low_complexity 3 96 0 226 189 0 0 chr12 30974226 30974263 -113308226 + MER53 DNA DNA 5 41 -148 1246 274 55 21 chr12 30975761 30976180 -113306309 + LTR16A LTR ERVL 16 448 -2 2378 284 43 15 chr12 30976182 30976929 -113305560 + HERV16 LTR ERVL 1 768 -4228 1562 329 43 11 chr12 30976941 30977634 -113304855 + HERV16 LTR ERVL 2826 3540 -2224 1899 202 18 5 chr12 30977635 30978026 -113304463 - MER63C DNA MER1_type -16 914 519 708 215 133 0 chr12 30978101 30978236 -113304253 - AluJb SINE Alu -17 295 143 8222 68 9 9 chr12 30978236 30979293 -113303196 + MER11C LTR ERVK 1 1057 -14 1946 193 23 23 chr12 30979389 30979824 -113302665 - MER63C DNA MER1_type -446 484 50 371 333 60 31 chr12 30980046 30980463 -113302026 + HERV16 LTR ERVL 3910 4290 -706 466 312 46 21 chr12 30980765 30981136 -113301353 + HERV16 LTR ERVL 4537 5310 -175 611 320 63 40 chr12 30981289 30981736 -113300753 + LTR16B LTR ERVL 8 464 0 797 269 137 55 chr12 30981736 30982173 -113300316 + L1ME2 LINE L1 4843 5326 -820 1613 222 122 16 chr12 30982173 30982624 -113299865 - MLT1D LTR MaLR -2 503 5 797 269 137 55 chr12 30982624 30982676 -113299813 + L1ME2 LINE L1 5326 5372 -774 283 342 116 13 chr12 30983919 30984074 -113298415 + MIR3 SINE MIR 17 187 -21 272 327 101 42 chr12 30986054 30986271 -113296218 + L2 LINE L2 2851 3080 -192 1288 215 21 58 chr12 30986853 30987122 -113295367 + L1ME2 LINE L1 5793 6046 -118 2750 202 80 79 chr12 30987122 30987947 -113294542 + LTR1B LTR ERV1 1 826 0 1288 215 21 58 chr12 30987947 30988053 -113294436 + L1ME2 LINE L1 6046 6154 -10 375 60 0 0 chr12 30988200 30988250 -113294239 + (TG)n Simple_repeat Simple_repeat 1 50 0 1348 213 54 57 chr12 30988608 30988997 -113293492 - MLT1B LTR MaLR -1 389 2 200 286 176 11 chr12 30989033 30989124 -113293365 - L2 LINE L2 -1 3312 3207 541 234 55 45 chr12 30990036 30990237 -113292252 - MIR SINE MIR -47 215 13 2165 122 0 0 chr12 30990617 30990912 -113291577 - AluSx SINE Alu -17 295 1 570 272 69 0 chr12 30991614 30991787 -113290702 - MIR SINE MIR -73 189 5 915 161 0 0 chr12 30991818 30991998 -113290491 + (CTATA)n Simple_repeat Simple_repeat 1 180 0 228 189 40 0 chr12 30992023 30992097 -113290392 + (CTATA)n Simple_repeat Simple_repeat 2 78 0 4045 109 13 30 chr12 30994706 30995169 -113287320 - L1PA16 LINE L1 -104 6062 5610 1840 137 3 82 chr12 30995169 30995497 -113286992 - AluSx SINE Alu -10 302 1 4045 109 13 30 chr12 30995497 30995637 -113286852 - L1PA16 LINE L1 -556 5610 5469 2194 118 0 0 chr12 30997051 30997348 -113285141 - AluSx SINE Alu -15 297 1 25 31 0 0 chr12 30998139 30998171 -113284318 + AT_rich Low_complexity Low_complexity 1 32 0 354 173 12 25 chr12 30998477 30998558 -113283931 - MER116 DNA Mariner 0 80 1 828 215 123 53 chr12 30999862 31000194 -113282295 - LTR37A LTR ERV1 -123 303 14 21 0 0 0 chr12 31000367 31000388 -113282101 + AT_rich Low_complexity Low_complexity 1 21 0 321 353 17 9 chr12 31000459 31000575 -113281914 - MER89-int LTR ERV1 -4374 273 157 491 296 96 21 chr12 31000784 31001064 -113281425 - MER89-int LTR ERV1 -4428 2373 2073 758 241 97 97 chr12 31001381 31001846 -113280643 - L1M4 LINE L1 -929 5217 4753 325 194 15 0 chr12 31001987 31002054 -113280435 + LTR60 LTR ERV1 1 68 -518 1161 231 62 19 chr12 31002171 31002492 -113279997 + LTR43 LTR ERV1 131 465 -137 500 268 134 8 chr12 31002975 31003341 -113279148 + L1ME4a LINE L1 5710 6121 0 375 23 0 0 chr12 31004449 31004493 -113277996 + (CA)n Simple_repeat Simple_repeat 2 45 0 26 0 0 0 chr12 31005260 31005286 -113277203 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr12 31006149 31006170 -113276319 + GC_rich Low_complexity Low_complexity 1 21 0 1227 238 82 76 chr12 31006792 31007304 -113275185 - LTR40a LTR ERVL 0 519 5 527 277 123 45 chr12 31007895 31008035 -113274454 + L2 LINE L2 2815 2943 -370 2451 77 0 0 chr12 31008035 31008333 -113274156 - AluSg SINE Alu -12 298 1 527 277 123 45 chr12 31008333 31008524 -113273965 + L2 LINE L2 2943 3172 -141 2794 231 83 46 chr12 31008896 31009718 -113272771 - MER21B LTR ERV1 -11 852 1 3611 186 20 50 chr12 31009926 31010725 -113271764 - MER21B-int LTR ERV1 -56 4135 3361 3289 201 11 16 chr12 31010725 31011393 -113271096 - MER21B-int LTR ERV1 -772 3419 2756 194 303 61 53 chr12 31012007 31012139 -113270350 - MER5B DNA MER1_type -43 135 3 739 227 127 23 chr12 31012148 31012368 -113270121 - MIR SINE MIR -2 260 18 2507 70 0 0 chr12 31012826 31013127 -113269362 - AluY SINE Alu -10 301 1 429 267 167 56 chr12 31013297 31013567 -113268922 - L2 LINE L2 -86 3227 2928 303 237 219 26 chr12 31013606 31013720 -113268769 - L2 LINE L2 -250 3063 2928 309 239 229 28 chr12 31013760 31013869 -113268620 - L2 LINE L2 -251 3062 2932 1701 140 181 27 chr12 31013870 31014235 -113268254 + MSTA LTR MaLR 1 421 -7 397 300 122 19 chr12 31014242 31014505 -113267984 - L2 LINE L2 -374 2940 2651 2416 80 0 0 chr12 31014510 31014799 -113267690 + AluSq SINE Alu 11 299 -14 1579 157 130 58 chr12 31014799 31015201 -113267288 + LTR54B LTR ERV1 14 453 -45 1554 160 0 69 chr12 31015201 31015519 -113266970 + AluJb SINE Alu 1 296 -16 1579 157 130 58 chr12 31015519 31015562 -113266927 + LTR54B LTR ERV1 453 491 -7 2549 53 0 3 chr12 31015816 31016120 -113266369 - AluY SINE Alu 0 311 9 961 202 83 138 chr12 31016971 31017486 -113265003 + LTR45B LTR ERV1 2 488 -1 236 312 156 0 chr12 31018228 31018305 -113264184 - L2 LINE L2 0 3272 3184 274 125 0 78 chr12 31018423 31018487 -113264002 - L1PB4 LINE L1 -1 6155 6097 368 262 9 0 chr12 31018715 31018822 -113263667 - LTR43 LTR ERV1 -306 296 189 1360 148 49 0 chr12 31019026 31019270 -113263219 - L1PB4 LINE L1 -50 6106 5851 520 306 121 19 chr12 31019456 31019828 -113262661 - Charlie8 DNA MER1_type -1896 521 112 198 71 0 0 chr12 31019985 31020013 -113262476 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 203 272 141 0 chr12 31020025 31020117 -113262372 - L2 LINE L2 -16 3297 3193 3830 115 0 6 chr12 31020408 31020938 -113261551 - MER1A DNA MER1_type 0 527 1 1096 182 63 20 chr12 31021420 31021722 -113260767 + MER33 DNA MER1_type 10 324 0 27 29 0 0 chr12 31022523 31022557 -113259932 + AT_rich Low_complexity Low_complexity 1 34 0 3406 141 87 13 chr12 31022994 31024019 -113258470 + Tigger3b DNA MER2_type 40 1232 0 22 0 0 0 chr12 31024192 31024214 -113258275 + AT_rich Low_complexity Low_complexity 1 22 0 315 169 0 0 chr12 31024476 31024547 -113257942 + (TA)n Simple_repeat Simple_repeat 2 72 0 732 251 92 53 chr12 31024752 31025167 -113257322 + Charlie2 DNA MER1_type 44 474 -2308 1630 213 73 55 chr12 31025196 31026094 -113256395 + Charlie2a DNA MER1_type 1482 2362 -500 2328 99 0 0 chr12 31026094 31026388 -113256101 + AluY SINE Alu 3 296 -15 1630 213 73 55 chr12 31026388 31026531 -113255958 + Charlie2a DNA MER1_type 2362 2501 -361 8049 77 5 9 chr12 31026531 31027607 -113254882 + MER11C LTR ERVK 1 1071 0 1630 213 73 55 chr12 31027607 31027874 -113254615 + Charlie2a DNA MER1_type 2501 2845 -17 25 0 0 0 chr12 31028481 31028506 -113253983 + AT_rich Low_complexity Low_complexity 1 25 0 2117 138 33 30 chr12 31028516 31028879 -113253610 + THE1B LTR MaLR 1 364 0 199 211 211 32 chr12 31029035 31029158 -113253331 - L2 LINE L2 -11 3302 3158 24 67 0 0 chr12 31030241 31030286 -113252203 + AT_rich Low_complexity Low_complexity 1 45 0 183 258 106 0 chr12 31030863 31030929 -113251560 - MIR SINE MIR -109 153 81 5225 117 16 41 chr12 31031097 31032102 -113250387 + L1PB3 LINE L1 5176 6154 0 38 22 0 0 chr12 31032638 31032683 -113249806 + AT_rich Low_complexity Low_complexity 1 45 0 2074 139 2 42 chr12 31032684 31032953 -113249536 - L1MA7 LINE L1 -2 6289 6040 1961 158 45 20 chr12 31032953 31033308 -113249181 + THE1B LTR MaLR 1 364 0 2074 139 2 42 chr12 31033308 31033442 -113249047 - L1MA7 LINE L1 -251 6040 5902 1295 156 40 8 chr12 31033454 31033704 -113248785 + L1M2 LINE L1 5373 5630 -661 417 374 58 0 chr12 31035057 31035196 -113247293 - L2 LINE L2 0 3272 3126 3539 133 9 52 chr12 31035284 31035914 -113246575 - LTR26 LTR ERV1 0 603 1 660 291 35 6 chr12 31035960 31036132 -113246357 - MIR SINE MIR -77 185 9 2182 168 48 30 chr12 31036236 31036552 -113245937 + LTR24 LTR ERV1 1 329 -138 2213 141 0 0 chr12 31036552 31036864 -113245625 + AluSx SINE Alu 1 312 0 2182 168 48 30 chr12 31036864 31037006 -113245483 + LTR24 LTR ERV1 329 467 0 967 258 51 110 chr12 31037066 31037656 -113244833 + MLT1G LTR MaLR 20 574 -16 207 220 0 0 chr12 31037706 31037756 -113244733 + (CA)n Simple_repeat Simple_repeat 1 50 0 2148 117 7 26 chr12 31038155 31038464 -113244025 + AluSx SINE Alu 1 303 -9 483 305 135 13 chr12 31038621 31039080 -113243409 - L1ME2 LINE L1 -212 5952 5438 646 252 40 97 chr12 31039085 31039509 -113242980 + HAL1 LINE L1 2070 2469 -38 342 0 0 0 chr12 31039718 31039756 -113242733 + (TG)n Simple_repeat Simple_repeat 2 39 0 255 277 31 0 chr12 31039838 31039903 -113242586 + CT-rich Low_complexity Low_complexity 4 70 0 550 287 146 53 chr12 31040364 31041122 -113241367 - L2 LINE L2 0 3272 2360 309 307 18 9 chr12 31041291 31041405 -113241084 + L2 LINE L2 3153 3267 -5 220 303 90 0 chr12 31041668 31041757 -113240732 - MIR SINE MIR -7 255 159 427 172 56 141 chr12 31041757 31041955 -113240534 - MER53 DNA DNA -8 181 1 285 319 51 22 chr12 31041957 31042095 -113240394 - MIR SINE MIR -93 169 28 208 190 10 130 chr12 31042653 31042753 -113239736 + MIR SINE MIR 118 205 -57 465 241 46 9 chr12 31043454 31043562 -113238927 - L2 LINE L2 -3 3310 3199 712 270 67 30 chr12 31044214 31044714 -113237775 - MLT1G LTR MaLR -2 588 1 4799 196 106 16 chr12 31046143 31046721 -113235768 + Charlie1a DNA MER1_type 1 526 -2235 1796 194 64 80 chr12 31046721 31047284 -113235205 + MLT2B3 LTR ERVL 1 554 0 4799 196 106 16 chr12 31047284 31048041 -113234448 + Charlie1a DNA MER1_type 526 1455 0 235 160 11 43 chr12 31048383 31048477 -113234012 + CT-rich Low_complexity Low_complexity 2 92 0 276 30 0 0 chr12 31049168 31049201 -113233288 + (CA)n Simple_repeat Simple_repeat 1 33 0 237 193 48 48 chr12 31049353 31049436 -113233053 - MIR SINE MIR -21 241 159 546 292 42 54 chr12 31049444 31049643 -113232846 + MIR SINE MIR 10 207 -55 2150 104 24 3 chr12 31049643 31049940 -113232549 + AluY SINE Alu 1 303 -8 546 292 42 54 chr12 31049940 31049980 -113232509 + MIR SINE MIR 207 246 -16 368 278 31 0 chr12 31049983 31050080 -113232409 - MIR SINE MIR -106 156 57 23 33 0 0 chr12 31050605 31050635 -113231854 + AT_rich Low_complexity Low_complexity 1 30 0 1777 175 0 0 chr12 31050635 31050920 -113231569 - AluJo SINE Alu -27 285 1 414 298 50 35 chr12 31051780 31051921 -113230568 + MIR3 SINE MIR 5 147 -61 1128 240 96 38 chr12 31052049 31052415 -113230074 + MSTD LTR MaLR 1 387 -9 240 35 0 0 chr12 31052421 31052450 -113230039 + (CA)n Simple_repeat Simple_repeat 2 30 0 4008 194 32 98 chr12 31052454 31053673 -113228816 + L1MC3 LINE L1 6630 7768 -17 2522 232 90 9 chr12 31053668 31053964 -113228525 + L1ME2 LINE L1 4631 4902 -1262 * 180 0 0 0 chr12 31053964 31053984 -113228505 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2522 232 90 9 chr12 31053984 31055099 -113227390 + L1ME2 LINE L1 4902 6162 -2 401 266 18 0 chr12 31055144 31055253 -113227236 - MIR SINE MIR 0 262 152 225 0 0 0 chr12 31056583 31056608 -113225881 + (A)n Simple_repeat Simple_repeat 1 25 0 2108 141 0 7 chr12 31057017 31057323 -113225166 + AluJb SINE Alu 1 304 -8 2062 214 81 14 chr12 31057791 31058336 -113224153 + MER77 LTR ERV1 41 597 -8 1670 175 45 0 chr12 31059488 31059780 -113222709 + AluJb SINE Alu 1 305 -7 693 201 14 126 chr12 31060335 31060629 -113221860 - LTR41 LTR ERVL -7 766 506 689 200 50 11 chr12 31060795 31060975 -113221514 - LTR41 LTR ERVL -586 187 1 5706 152 22 19 chr12 31061782 31064954 -113217535 + L1MA2 LINE L1 16 3178 -4545 784 172 23 0 chr12 31064954 31065082 -113217407 + FLAM_C SINE Alu 3 133 0 5706 152 22 19 chr12 31065082 31065380 -113217109 + L1MA2 LINE L1 3178 3474 -4249 297 0 0 0 chr12 31065380 31065413 -113217076 + (CA)n Simple_repeat Simple_repeat 2 34 0 5706 152 22 19 chr12 31065413 31067194 -113215295 + L1MA2 LINE L1 3474 5248 -2475 2663 102 32 0 chr12 31067194 31067538 -113214951 + THE1A LTR MaLR 1 355 0 11415 102 53 1 chr12 31067538 31069041 -113213448 + THE1A-int LTR MaLR 1 1580 0 2484 100 41 0 chr12 31069041 31069382 -113213107 + THE1A LTR MaLR 1 355 0 5706 152 22 19 chr12 31069382 31070181 -113212308 + L1MA2 LINE L1 5248 6043 -1680 2186 129 3 0 chr12 31070181 31070492 -113211997 + AluSx SINE Alu 1 312 0 5706 152 22 19 chr12 31070492 31071333 -113211156 + L1MA2 LINE L1 6043 6880 -843 425 162 0 27 chr12 31071333 31071407 -113211082 + L1PA8A LINE L1 6055 6126 -5 * 5706 118 16 5 chr12 31071404 31072238 -113210251 + L1MA2 LINE L1 6881 7723 0 5706 152 22 19 chr12 31071407 31072247 -113210242 + L1MA2 LINE L1 6880 7723 0 718 133 0 31 chr12 31072494 31072622 -113209867 - L1MA9 LINE L1 0 6312 6189 2257 102 0 10 chr12 31072971 31073285 -113209204 - AluSq SINE Alu -2 311 1 488 296 151 0 chr12 31073456 31073642 -113208847 - MIR SINE MIR -28 234 21 238 286 60 12 chr12 31073719 31073803 -113208686 + MIR3 SINE MIR 98 185 -23 2340 162 16 0 chr12 31076284 31076649 -113205840 - THE1C LTR MaLR -4 371 1 9631 116 38 67 chr12 31076657 31078274 -113204215 - THE1C-int LTR MaLR -8 1572 2 2303 156 36 0 chr12 31078275 31078635 -113203854 - THE1C LTR MaLR 0 375 3 402 280 126 43 chr12 31078881 31079061 -113203428 - L1ME3A LINE L1 -223 6016 5852 4640 140 79 59 chr12 31079061 31079946 -113202543 - MER4D LTR ERV1 0 903 1 402 280 126 43 chr12 31079946 31080320 -113202169 - L1ME3A LINE L1 -387 5852 5407 1065 261 129 21 chr12 31080336 31080769 -113201720 - L1ME2 LINE L1 -6 6158 5679 1397 268 80 9 chr12 31080774 31081236 -113201253 - L1ME3A LINE L1 -5455 941 447 884 235 201 7 chr12 31081260 31081549 -113200940 - L1ME3A LINE L1 -5992 404 60 321 237 66 66 chr12 31081585 31081737 -113200752 - Charlie2 DNA MER1_type -2466 316 165 2270 85 7 7 chr12 31081897 31082192 -113200297 - AluSc SINE Alu -14 295 1 2730 96 6 3 chr12 31083626 31083980 -113198509 + THE1A LTR MaLR 1 355 0 12147 103 5 11 chr12 31083980 31084400 -113198089 + THE1A-int LTR MaLR 1 422 -1158 2100 114 0 10 chr12 31084400 31084699 -113197790 + AluSg SINE Alu 1 296 -14 12147 103 5 11 chr12 31084699 31085865 -113196624 + THE1A-int LTR MaLR 422 1578 -2 2383 117 38 0 chr12 31085867 31086209 -113196280 + THE1A LTR MaLR 1 355 0 747 176 120 0 chr12 31087766 31087908 -113194581 + MER58B DNA MER1_type 181 339 -2 2684 217 60 107 chr12 31089103 31089293 -113193196 - L1MC5 LINE L1 -74 7887 7690 1584 147 41 44 chr12 31089293 31089586 -113192903 - AluJo SINE Alu -18 294 3 2684 217 60 107 chr12 31089586 31090660 -113191829 - L1MC5 LINE L1 -271 7690 6682 5617 196 61 18 chr12 31090680 31092846 -113189643 - L1MB7 LINE L1 -1 6183 3938 214 333 0 0 chr12 31092887 31092935 -113189554 - MIR SINE MIR -209 53 6 * 221 287 188 74 chr12 31092896 31093412 -113189077 + L2 LINE L2 2012 2586 -728 244 263 38 0 chr12 31093593 31093673 -113188816 - L1ME LINE L1 -275 5846 5764 707 232 147 0 chr12 31094207 31094405 -113188084 - LTR16A1 LTR ERVL -28 429 203 28616 53 5 5 chr12 31094530 31098892 -113183597 + L1PA5 LINE L1 1543 6432 -2 198 91 0 0 chr12 31098925 31098958 -113183531 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 237 171 146 85 chr12 31099068 31099150 -113183339 - L2 LINE L2 -4 3268 3182 569 286 0 20 chr12 31102000 31102147 -113180342 + MIR SINE MIR 8 151 -111 259 340 62 0 chr12 31102601 31102698 -113179791 + MIR3 SINE MIR 78 180 -28 199 306 41 51 chr12 31104568 31104666 -113177823 - MIR SINE MIR -106 156 60 417 191 32 63 chr12 31104666 31104792 -113177697 + L1ME4a LINE L1 5964 6085 -36 1536 197 14 37 chr12 31104905 31105200 -113177289 + AluJo SINE Alu 11 298 -14 2065 68 39 84 chr12 31105447 31105757 -113176732 - AluSg SINE Alu -14 296 1 278 284 29 64 chr12 31105940 31106144 -113176345 - L2 LINE L2 -179 3093 2897 2530 145 23 0 chr12 31106663 31107056 -113175433 + MER57A LTR ERV1 2 403 0 2667 196 24 2 chr12 31107756 31108406 -113174083 + L1P5 LINE L1 4799 5460 -696 274 27 27 0 chr12 31108410 31108447 -113174042 + L1PB4 LINE L1 5928 5965 -191 892 317 51 59 chr12 31108942 31109585 -113172904 - L2 LINE L2 -346 2968 2331 611 121 0 11 chr12 31111030 31111121 -113171368 - 5S rRNA rRNA -31 90 1 191 337 139 0 chr12 31111277 31111363 -113171126 + MIR SINE MIR 50 147 -61 2077 114 20 13 chr12 31111410 31111709 -113170780 + AluSp SINE Alu 1 301 -12 4247 124 16 31 chr12 31112205 31112890 -113169599 - MER4D LTR ERV1 -197 675 1 366 179 0 77 chr12 31112890 31112968 -113169521 + AluJo SINE Alu 81 152 -150 279 293 24 0 chr12 31113033 31113115 -113169374 + LTR35 LTR ERV1 46 129 -489 712 235 66 44 chr12 31113233 31113561 -113168928 + LTR35 LTR ERV1 350 614 -4 806 227 0 23 chr12 31113564 31113736 -113168753 + FRAM SINE Alu 1 40 0 225 193 126 42 chr12 31113877 31113996 -113168493 + L1ME4a LINE L1 5988 6116 -5 1380 167 13 0 chr12 31114287 31114520 -113167969 - AluJo SINE Alu -4 308 73 12927 183 25 15 chr12 31114531 31119172 -113163317 + L1PA12 LINE L1 1 6008 -1576 1599 224 83 13 chr12 31119191 31119451 -113163038 - MLT1C LTR MaLR -4 463 166 309 26 0 0 chr12 31119451 31119489 -113163000 + (TG)n Simple_repeat Simple_repeat 2 39 0 1599 224 83 13 chr12 31119489 31119612 -113162877 - MLT1C LTR MaLR -301 166 53 333 350 86 27 chr12 31119846 31120032 -113162457 + MIR SINE MIR 16 212 -50 339 200 133 0 chr12 31120565 31120655 -113161834 + MIR SINE MIR 73 174 -88 1118 186 95 113 chr12 31120655 31121025 -113161464 - MLT1B LTR MaLR 0 390 28 2015 129 25 0 chr12 31121038 31121343 -113161146 + AluSq SINE Alu 1 312 0 280 304 207 4 chr12 31121739 31122005 -113160484 + L2 LINE L2 2643 2962 -352 569 183 63 40 chr12 31122453 31122579 -113159910 + L2 LINE L2 3140 3268 -4 2382 190 66 0 chr12 31122601 31122740 -113159749 + L1MB3 LINE L1 5681 5809 -374 2840 16 0 0 chr12 31122740 31123051 -113159438 + AluY SINE Alu 1 311 0 2382 190 66 0 chr12 31123051 31123380 -113159109 + L1MB3 LINE L1 5809 6180 -3 402 264 214 11 chr12 31123763 31123941 -113158548 + MLT1H1 LTR MaLR 5 218 -377 458 249 90 48 chr12 31124053 31124242 -113158247 + MLT1H1 LTR MaLR 358 554 -1 214 182 18 73 chr12 31124501 31124556 -113157933 - L2 LINE L2 0 3313 3262 2181 98 0 3 chr12 31126992 31127277 -113155212 - AluSg SINE Alu -26 284 1 1964 253 80 30 chr12 31128245 31128810 -113153679 + MLT1E LTR MaLR 1 593 0 261 319 92 25 chr12 31129155 31129274 -113153215 - MER91A DNA MER1_type -69 127 1 302 222 0 16 chr12 31129421 31129484 -113153005 + L2 LINE L2 3237 3298 -15 260 236 0 0 chr12 31129806 31129861 -113152628 - L2 LINE L2 -332 2981 2927 427 231 175 6 chr12 31129906 31130066 -113152423 - LTR50 LTR ERVL -19 776 590 659 221 56 10 chr12 31130236 31130434 -113152055 - LTR41 LTR ERVL -575 220 1 9537 295 59 27 chr12 31130774 31132654 -113149835 - ERVL LTR ERVL -394 5370 3551 6728 143 98 26 chr12 31132654 31133846 -113148643 + MER52C LTR ERV1 1 1278 0 9537 295 59 27 chr12 31133846 31135505 -113146984 - ERVL LTR ERVL -2213 3551 1719 823 202 48 12 chr12 31135506 31135674 -113146815 - MER58B DNA MER1_type 0 341 168 334 312 25 13 chr12 31137512 31137669 -113144820 + Charlie2 DNA MER1_type 165 323 -2459 2253 263 122 9 chr12 31137669 31138470 -113144019 + L1ME3A LINE L1 45 936 -5460 1104 275 117 5 chr12 31138474 31138900 -113143589 + L1ME2 LINE L1 5672 6145 -19 515 299 89 54 chr12 31138931 31139380 -113143109 + L1ME3A LINE L1 5407 5839 -400 2080 128 0 7 chr12 31139380 31139685 -113142804 + AluSx SINE Alu 1 303 -9 1997 125 21 0 chr12 31139689 31139977 -113142512 + AluSx SINE Alu 3 296 -16 515 299 89 54 chr12 31139977 31140131 -113142358 + L1ME3A LINE L1 5841 6036 -203 2448 147 70 2 chr12 31141375 31141776 -113140713 - MSTA LTR MaLR 0 428 1 2632 40 3 0 chr12 31142940 31143241 -113139248 + L1PA4 LINE L1 5852 6153 -2 1654 136 4 12 chr12 31143595 31143853 -113138636 + AluSq SINE Alu 41 296 -17 493 278 183 6 chr12 31143990 31144170 -113138319 + MIR SINE MIR 23 234 -28 821 108 0 0 chr12 31144663 31144783 -113137706 + L1MA9 LINE L1 6189 6308 -4 241 146 0 36 chr12 31145581 31145636 -113136853 - L1M4 LINE L1 -1962 4184 4132 738 180 42 58 chr12 31145891 31146047 -113136442 + LTR41 LTR ERVL 2 156 -617 2035 77 0 33 chr12 31146047 31146319 -113136170 - AluY SINE Alu -12 299 37 738 180 42 58 chr12 31146319 31146351 -113136138 + LTR41 LTR ERVL 156 187 -586 863 187 14 126 chr12 31146517 31146811 -113135678 + LTR41 LTR ERVL 506 766 -7 2104 112 0 3 chr12 31147879 31148187 -113134302 + AluY SINE Alu 1 307 0 2179 222 76 17 chr12 31148908 31149434 -113133055 - MER77 LTR ERV1 -8 597 41 21 36 0 0 chr12 31150102 31150130 -113132359 + AT_rich Low_complexity Low_complexity 1 28 0 208 359 94 8 chr12 31150757 31150885 -113131604 - L2 LINE L2 -347 2967 2829 322 255 108 0 chr12 31151009 31151111 -113131378 + MIR SINE MIR 125 237 -25 21 0 0 0 chr12 31151557 31151578 -113130911 + AT_rich Low_complexity Low_complexity 1 21 0 463 232 36 0 chr12 31151706 31151818 -113130671 - MIR SINE MIR -63 199 84 3274 96 38 2 chr12 31151972 31152419 -113130070 + L1PA13 LINE L1 5699 6161 -2 3552 259 81 10 chr12 31153721 31154445 -113128044 - L1MD3 LINE L1 -70 7925 7083 2076 135 0 3 chr12 31154445 31154734 -113127755 - AluSx SINE Alu -24 288 1 3552 259 81 10 chr12 31154734 31155197 -113127292 - L1MD3 LINE L1 -912 7083 6654 23 0 0 0 chr12 31155229 31155252 -113127237 + GC_rich Low_complexity Low_complexity 1 23 0 385 268 31 0 chr12 31156532 31156629 -113125860 + MIR SINE MIR 57 156 -106 627 303 44 4 chr12 31156632 31156860 -113125629 - MIR SINE MIR -16 246 10 257 242 11 0 chr12 31157814 31157905 -113124584 + A-rich Low_complexity Low_complexity 2 93 0 1604 142 86 44 chr12 31158273 31158681 -113123808 - Charlie1a DNA MER1_type -34 1421 997 5714 21 0 6 chr12 31158681 31159336 -113123153 - L1PA2 LINE L1 0 6155 5538 3607 28 0 0 chr12 31159336 31159760 -113122729 + L1P LINE L1 4828 5251 -895 4054 186 114 19 chr12 31159760 31160099 -113122390 - Charlie1a DNA MER1_type -1754 1007 702 2180 181 39 100 chr12 31160099 31160689 -113121800 - MLT2B3 LTR ERVL 0 554 1 4054 186 114 19 chr12 31160689 31161268 -113121221 - Charlie1a DNA MER1_type -2059 702 1 31 26 0 0 chr12 31162086 31162124 -113120365 + AT_rich Low_complexity Low_complexity 1 38 0 484 320 103 25 chr12 31162677 31162958 -113119531 + MLT1H1 LTR MaLR 1 303 -252 748 224 5 82 chr12 31162971 31163167 -113119322 + LTR41 LTR ERVL 10 190 -583 399 235 128 20 chr12 31163455 31163604 -113118885 + LTR41 LTR ERVL 606 770 -3 1136 326 88 70 chr12 31163986 31165024 -113117465 + ERVL LTR ERVL 406 1461 -4024 2405 75 3 0 chr12 31165240 31165535 -113116954 - AluY SINE Alu -15 296 1 473 273 111 35 chr12 31165690 31165888 -113116601 - MIR SINE MIR -30 232 20 1522 150 52 116 chr12 31165925 31166450 -113116039 - MER4C LTR ERV1 0 465 58 360 0 0 0 chr12 31166450 31166490 -113115999 + (TG)n Simple_repeat Simple_repeat 1 40 0 1522 150 52 116 chr12 31166490 31166545 -113115944 - MER4C LTR ERV1 -407 58 1 3457 172 21 66 chr12 31166546 31167319 -113115170 - MER4C-int LTR ERV1 0 6598 5861 225 224 0 0 chr12 31167320 31167378 -113115111 + (TA)n Simple_repeat Simple_repeat 2 59 0 226 109 0 0 chr12 31167378 31167424 -113115065 + LTR66 LTR ERVL 394 439 -171 * 248 137 20 0 chr12 31167410 31167461 -113115028 - LTR66 LTR ERVL -171 439 388 7553 173 81 45 chr12 31167462 31169819 -113112670 - MER4C-int LTR ERV1 -1326 4620 2810 480 188 7 69 chr12 31169825 31170146 -113112343 - MER4A LTR ERV1 -238 348 1 1043 227 26 0 chr12 31170168 31170432 -113112057 + L1MB5 LINE L1 5566 5836 -338 1812 148 92 22 chr12 31170432 31170791 -113111698 - LTR26B LTR ERV1 0 531 148 235 100 200 0 chr12 31170791 31170841 -113111648 - LTR26B LTR ERV1 -343 188 129 8349 152 23 23 chr12 31170842 31172391 -113110098 - L1P LINE L1 -4587 1559 11 673 239 5 73 chr12 31172636 31172854 -113109635 - LTR26 LTR ERV1 0 603 401 4108 108 12 0 chr12 31172867 31173459 -113109030 - L1PA10 LINE L1 -11 6472 5874 4500 57 3 0 chr12 31173492 31174074 -113108415 - LTR8 LTR ERV1 -107 584 1 33749 69 16 12 chr12 31174075 31178891 -113103598 - HUERS-P1 LTR ERV1 -1 6262 1427 5995 104 36 2 chr12 31178895 31179782 -113102707 - HUERS-P1 LTR ERV1 -5346 917 1 996 112 0 0 chr12 31179783 31179926 -113102563 - LTR8 LTR ERV1 -1 690 548 21526 190 23 22 chr12 31179926 31182929 -113099560 - L1PA10 LINE L1 -743 5718 2576 2377 107 0 3 chr12 31182929 31183238 -113099251 - AluY SINE Alu -3 308 1 21526 190 23 22 chr12 31183238 31185584 -113096905 - L1PA10 LINE L1 -3885 2576 234 393 145 0 26 chr12 31185561 31185671 -113096818 + L1PA10 LINE L1 6074 6181 0 * 718 150 7 54 chr12 31185671 31185818 -113096671 + L1MCa LINE L1 472 611 -5815 4623 243 19 10 chr12 31185863 31187215 -113095274 + L1MC1 LINE L1 3884 5248 -898 565 150 230 0 chr12 31187215 31187315 -113095174 + FLAM_C SINE Alu 1 123 -20 5269 144 16 25 chr12 31187337 31187421 -113095068 + L1MC1 LINE L1 5254 5337 -996 1636 186 10 10 chr12 31187421 31187711 -113094778 + AluJb SINE Alu 3 292 -20 5269 144 16 25 chr12 31187711 31188598 -113093891 + L1MC1 LINE L1 5337 6217 -116 867 236 130 95 chr12 31188598 31189136 -113093353 - MER34B LTR ERV1 0 565 9 667 171 0 8 chr12 31189156 31189279 -113093210 + L1MC1 LINE L1 6212 6333 0 1112 179 130 3 chr12 31189292 31189599 -113092890 + MER45R DNA AcHobo 1233 1578 -3 309 263 13 0 chr12 31189795 31189871 -113092618 - L1MC5 LINE L1 -179 7782 7706 182 36 0 36 chr12 31190843 31190871 -113091618 + (CAAAAA)n Simple_repeat Simple_repeat 1 27 0 203 179 0 0 chr12 31191053 31191092 -113091397 + T-rich Low_complexity Low_complexity 1 39 0 2160 122 0 7 chr12 31191133 31191437 -113091052 + AluSx SINE Alu 1 302 -10 368 275 10 62 chr12 31191761 31191954 -113090535 - L1MC5 LINE L1 -63 7898 7716 1435 173 0 60 chr12 31191955 31192239 -113090250 - AluSx SINE Alu -9 303 37 842 222 104 32 chr12 31192255 31192696 -113089793 - L1MC5 LINE L1 -234 7727 7255 2226 99 0 0 chr12 31192883 31193198 -113089291 + AluY SINE Alu 1 315 0 1078 149 6 0 chr12 31193201 31193369 -113089120 + AluSc SINE Alu 133 301 -8 2147 142 66 57 chr12 31193506 31193930 -113088559 - MSTA LTR MaLR 0 428 1 2775 142 35 12 chr12 31194276 31194762 -113087727 + LOR1a LTR ERV1 1 497 0 21303 121 38 42 chr12 31194763 31195582 -113086907 + LOR1a-int LTR ERV1 2 823 -7297 531 0 0 0 chr12 31195582 31195641 -113086848 + (TG)n Simple_repeat Simple_repeat 2 60 0 21303 121 38 42 chr12 31195641 31197661 -113084828 + LOR1a-int LTR ERV1 823 2850 -5270 2016 141 0 0 chr12 31197661 31197987 -113084502 + AluSx SINE Alu 1 326 0 21303 121 38 42 chr12 31197987 31198057 -113084432 + LOR1a-int LTR ERV1 2850 2919 -5201 248 28 56 0 chr12 31198057 31198093 -113084396 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 21303 121 38 42 chr12 31198093 31198126 -113084363 + LOR1a-int LTR ERV1 2919 2951 -5169 2026 137 0 3 chr12 31198126 31198418 -113084071 - AluSx SINE Alu -21 291 1 21303 121 38 42 chr12 31198418 31198909 -113083580 + LOR1a-int LTR ERV1 2951 3443 -4677 1697 176 0 14 chr12 31198909 31199188 -113083301 + AluJb SINE Alu 13 287 -25 21303 121 38 42 chr12 31199188 31199811 -113082678 + LOR1a-int LTR ERV1 3443 4046 -4074 1083 252 19 4 chr12 31199915 31200181 -113082308 - LTR43 LTR ERV1 -141 461 192 264 135 19 0 chr12 31200367 31200419 -113082070 - LTR60 LTR ERV1 -531 55 3 2120 123 14 113 chr12 31201226 31201715 -113080774 - HUERS-P2 LTR ERV1 -2772 3174 2796 937 171 12 43 chr12 31201707 31201963 -113080526 - HUERS-P2 LTR ERV1 -4917 2040 1815 * 267 343 0 0 chr12 31202556 31202658 -113079831 - HUERS-P2 LTR ERV1 -1089 1999 1898 489 279 6 6 chr12 31202840 31202998 -113079491 - HUERS-P2 LTR ERV1 -5229 1862 1705 2174 170 45 16 chr12 31203161 31203609 -113078880 - LOR1b LTR ERV1 0 461 1 578 193 70 29 chr12 31204631 31204802 -113077687 - HUERS-P2 LTR ERV1 -3536 1262 1085 1018 258 106 11 chr12 31204990 31205359 -113077130 - LTR43 LTR ERV1 -20 582 179 353 132 15 0 chr12 31205535 31205603 -113076886 - LTR60 LTR ERV1 -517 69 1 8780 118 16 6 chr12 31205603 31207070 -113075419 + LOR1a-int LTR ERV1 4042 5524 -2596 1422 167 4 4 chr12 31207060 31207324 -113075165 + LOR1a-int LTR ERV1 5801 6064 -2056 * 371 75 150 12 chr12 31207323 31207403 -113075086 + LOR1a-int LTR ERV1 8030 8120 0 * 2841 146 22 14 chr12 31207403 31207623 -113074866 + LOR1a LTR ERV1 1 218 -279 2206 128 51 14 chr12 31207623 31207974 -113074515 + THE1B LTR MaLR 1 364 0 2841 146 22 14 chr12 31207974 31208246 -113074243 + LOR1a LTR ERV1 218 497 0 733 121 7 57 chr12 31208486 31208627 -113073862 - L1PA16 LINE L1 0 6166 6033 290 214 14 0 chr12 31208704 31208774 -113073715 - L1PA16 LINE L1 -173 5993 5923 7962 190 24 19 chr12 31208788 31209827 -113072662 - L1PA16 LINE L1 -9 6157 5124 2280 112 0 6 chr12 31209827 31210139 -113072350 - AluY SINE Alu -1 310 1 7962 190 24 19 chr12 31210139 31212023 -113070466 - L1PA16 LINE L1 -1042 5124 3230 744 301 60 0 chr12 31212041 31212357 -113070132 - L1 LINE L1 -3314 2832 2498 2079 169 9 0 chr12 31212942 31213274 -113069215 - MER1B DNA MER1_type -2 335 1 2257 112 3 13 chr12 31213377 31213689 -113068800 + AluSx SINE Alu 1 309 -3 2087 119 3 3 chr12 31213838 31214133 -113068356 + AluY SINE Alu 1 295 -16 248 369 36 0 chr12 31214339 31214450 -113068039 - L2 LINE L2 -7 3306 3192 282 247 11 11 chr12 31214463 31214556 -113067933 + (TA)n Simple_repeat Simple_repeat 1 93 0 557 246 93 7 chr12 31214565 31214801 -113067688 - L2 LINE L2 -161 3152 2832 2231 96 0 16 chr12 31214801 31215104 -113067385 + AluY SINE Alu 1 298 -13 1873 108 8 0 chr12 31215495 31215745 -113066744 - AluSc SINE Alu -14 295 44 26 30 0 0 chr12 31215790 31215823 -113066666 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr12 31216877 31216905 -113065584 + AT_rich Low_complexity Low_complexity 1 28 0 2132 214 48 53 chr12 31217515 31217884 -113064605 - MLT1E LTR MaLR -8 585 219 1836 100 0 38 chr12 31217884 31218021 -113064468 + L1MA1 LINE L1 6018 6140 -162 2515 63 0 0 chr12 31218021 31218320 -113064169 + AluY SINE Alu 1 299 -12 1836 100 0 38 chr12 31218320 31218472 -113064017 + L1MA1 LINE L1 6140 6296 -6 2132 214 48 53 chr12 31218472 31218686 -113063803 - MLT1E LTR MaLR -374 219 5 3956 259 102 32 chr12 31219653 31221550 -113060939 + L2 LINE L2 1206 3313 0 229 273 0 0 chr12 31222553 31222608 -113059881 + L2 LINE L2 3213 3267 -5 189 171 0 0 chr12 31223408 31223443 -113059046 + T-rich Low_complexity Low_complexity 1 35 0 411 222 22 11 chr12 31223961 31224051 -113058438 + MIR3 SINE MIR 93 183 -25 186 43 0 0 chr12 31224445 31224468 -113058021 + (CAT)n Simple_repeat Simple_repeat 2 24 0 4623 72 0 0 chr12 31224558 31225188 -113057301 + L1PA7 LINE L1 5543 6172 0 795 223 17 19 chr12 31225994 31226262 -113056227 + MER83B LTR ERV1 96 365 -12 1904 151 0 13 chr12 31227059 31227370 -113055119 + AluJb SINE Alu 1 307 -5 1136 226 224 18 chr12 31227666 31228084 -113054405 + L2 LINE L2 2303 2816 -498 2896 141 60 0 chr12 31228084 31228553 -113053936 + LOR1a LTR ERV1 1 497 0 1136 226 224 18 chr12 31228553 31228572 -113053917 + L2 LINE L2 2816 2830 -484 2001 154 9 12 chr12 31228580 31228925 -113053564 + LOR1a-int LTR ERV1 28 371 -7749 4595 120 72 16 chr12 31228937 31229760 -113052729 + MER83B-int LTR ERV1 203 1071 -7049 * 8956 101 12 20 chr12 31229759 31229771 -113052718 + MER83B-int LTR ERV1 2004 2015 -6105 4460 148 61 8 chr12 31229771 31230555 -113051934 + LTR1B LTR ERV1 1 826 0 8956 101 12 20 chr12 31230555 31231501 -113050988 + MER83B-int LTR ERV1 2015 2950 -5170 2175 128 0 22 chr12 31231501 31231820 -113050669 + AluSx SINE Alu 1 312 0 8956 101 12 20 chr12 31231820 31232326 -113050163 + MER83B-int LTR ERV1 2950 3458 -4662 7589 106 27 7 chr12 31232324 31234276 -113048213 + MER83B-int LTR ERV1 3503 5524 -2596 * 1437 97 113 4 chr12 31234266 31234504 -113047985 + MER83B-int LTR ERV1 5801 6064 -2056 * 530 139 0 0 chr12 31234503 31234589 -113047900 + LOR1a-int LTR ERV1 8030 8115 -5 * 3247 128 2 10 chr12 31234598 31235099 -113047390 + LOR1a LTR ERV1 1 497 0 685 232 79 116 chr12 31235122 31235472 -113047017 + L2 LINE L2 2817 3146 -167 2233 116 0 0 chr12 31235472 31235764 -113046725 - AluSg SINE Alu -18 292 1 685 232 79 116 chr12 31235764 31235895 -113046594 + L2 LINE L2 3146 3280 -33 2158 126 7 0 chr12 31236211 31236520 -113045969 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr12 31236598 31236630 -113045859 + AT_rich Low_complexity Low_complexity 1 32 0 255 335 33 20 chr12 31237233 31237385 -113045104 + L3b LINE CR1 1241 1394 -189 25947 30 3 1 chr12 31237406 31241316 -113041173 - L1PA4 LINE L1 -3 6152 2237 29 0 0 0 chr12 31244044 31244073 -113038416 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr12 31245664 31245692 -113036797 + AT_rich Low_complexity Low_complexity 1 28 0 518 91 131 0 chr12 31246093 31246192 -113036297 + LTR38 LTR ERV1 1 112 -444 461 231 6 64 chr12 31246249 31246405 -113036084 - L2 LINE L2 -5 3308 3162 271 298 41 50 chr12 31248763 31248884 -113033605 - L2 LINE L2 0 3272 3153 22 56 0 0 chr12 31248940 31248976 -113033513 + AT_rich Low_complexity Low_complexity 1 36 0 228 271 35 12 chr12 31248983 31249065 -113033424 - MIR SINE MIR 0 262 179 498 311 123 21 chr12 31249065 31249300 -113033189 + MIR SINE MIR 1 259 -3 2183 141 2 72 chr12 31249661 31249837 -113032652 + MLT1B LTR MaLR 1 188 -202 2256 94 3 3 chr12 31249837 31250135 -113032354 + AluSq SINE Alu 1 298 -15 2183 141 2 72 chr12 31250135 31250377 -113032112 + MLT1B LTR MaLR 188 390 0 22 0 0 0 chr12 31251177 31251199 -113031290 + AT_rich Low_complexity Low_complexity 1 22 0 203 309 36 24 chr12 31251456 31251540 -113030949 + MIR3 SINE MIR 72 156 -52 286 211 0 48 chr12 31251753 31251857 -113030632 + (TTTA)n Simple_repeat Simple_repeat 2 100 0 21 36 0 0 chr12 31251876 31251904 -113030585 + AT_rich Low_complexity Low_complexity 1 28 0 2388 129 32 10 chr12 31252784 31253194 -113029295 + L1MB2 LINE L1 5746 6164 -7 729 246 41 17 chr12 31253221 31253522 -113028967 + L1MB8 LINE L1 5875 6178 0 528 326 30 38 chr12 31254052 31254451 -113028038 + L1ME LINE L1 24 419 -6004 688 313 73 15 chr12 31254750 31255478 -113027011 + L1ME LINE L1 1121 1895 -4887 871 263 81 11 chr12 31255479 31255831 -113026658 + L1ME LINE L1 5702 6106 -851 2827 154 63 0 chr12 31255831 31256319 -113026170 + LTR44 LTR ERV1 1 519 0 871 263 81 11 chr12 31256319 31256543 -113025946 + L1ME LINE L1 6106 6313 -644 426 267 31 97 chr12 31256753 31256852 -113025637 + L2 LINE L2 2978 3082 -231 2282 92 0 0 chr12 31256852 31257166 -113025323 + AluSx SINE Alu 1 314 0 426 267 31 97 chr12 31257166 31257323 -113025166 + L2 LINE L2 3082 3218 -95 1465 211 56 30 chr12 31257323 31257749 -113024740 + MLT1C LTR MaLR 6 442 -25 323 294 0 20 chr12 31257777 31257879 -113024610 + L2 LINE L2 3209 3308 -5 908 206 16 0 chr12 31257934 31258118 -113024371 - MER58A DNA MER1_type 0 224 38 180 125 0 0 chr12 31258802 31258834 -113023655 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 206 292 14 0 chr12 31258842 31258914 -113023575 + (CATA)n Simple_repeat Simple_repeat 3 75 0 1767 112 97 4 chr12 31260013 31260280 -113022209 - AluSg SINE Alu -18 292 1 895 102 12 42 chr12 31260281 31260448 -113022041 + L1MA7 LINE L1 6128 6289 -2 29 78 0 0 chr12 31260449 31260513 -113021976 + AT_rich Low_complexity Low_complexity 1 64 0 904 216 7 64 chr12 31261039 31261321 -113021168 - L1MA10 LINE L1 -4 6330 6065 285 29 0 0 chr12 31261321 31261355 -113021134 + (TC)n Simple_repeat Simple_repeat 1 34 0 2212 102 0 0 chr12 31261360 31261645 -113020844 - AluSx SINE Alu -27 285 1 685 219 0 0 chr12 31261652 31261807 -113020682 - L1 LINE L1 -1278 4932 4778 1385 226 91 8 chr12 31261815 31262178 -113020311 - L1 LINE L1 -5748 393 1 1683 106 57 0 chr12 31263257 31263661 -113018828 - L1PA16 LINE L1 -9 6157 5683 1593 144 26 103 chr12 31263890 31264307 -113018182 + MLT1B LTR MaLR 1 385 -5 509 264 9 0 chr12 31265497 31265607 -113016882 + MIR SINE MIR 28 138 -124 349 293 60 0 chr12 31266443 31266559 -113015930 - MIR SINE MIR -110 152 30 956 201 77 14 chr12 31267081 31267290 -113015199 + MER58A DNA MER1_type 3 224 0 699 259 0 46 chr12 31267522 31267734 -113014755 + MIR SINE MIR 45 242 -20 22 0 0 0 chr12 31267940 31267962 -113014527 + AT_rich Low_complexity Low_complexity 1 22 0 2295 91 3 0 chr12 31268053 31268349 -113014140 + AluY SINE Alu 1 297 -14 2508 176 62 10 chr12 31268437 31268920 -113013569 + MLT2B3 LTR ERVL 1 508 -46 261 0 0 0 chr12 31268921 31268950 -113013539 + (TCTA)n Simple_repeat Simple_repeat 1 29 0 9287 115 27 41 chr12 31268950 31270063 -113012426 - Tigger1 DNA MER2_type 0 2418 1291 699 118 0 0 chr12 31270063 31270198 -113012291 + (TAGA)n Simple_repeat Simple_repeat 4 138 0 9287 115 27 41 chr12 31270198 31270219 -113012270 - Tigger1 DNA MER2_type -1127 1291 1271 2327 95 0 3 chr12 31270219 31270513 -113011976 - AluY SINE Alu -18 293 1 9287 115 27 41 chr12 31270513 31271765 -113010724 - Tigger1 DNA MER2_type -1147 1271 24 235 206 127 0 chr12 31271768 31271831 -113010658 + MLT2B1 LTR ERVL 444 514 -6 658 172 11 81 chr12 31272845 31273019 -113009470 - MLT1C LTR MaLR 0 467 306 312 275 80 46 chr12 31273127 31273429 -113009060 + L1ME LINE L1 5265 5576 -586 4475 180 60 4 chr12 31273485 31275305 -113007184 - L1MA4A LINE L1 -20 6283 4367 624 177 190 41 chr12 31275397 31275692 -113006797 - MER52A LTR ERV1 -147 970 283 934 167 11 80 chr12 31275793 31275984 -113006505 - L1MA4A LINE L1 -1779 4367 4197 2615 65 0 0 chr12 31275984 31276293 -113006196 - AluY SINE Alu -2 309 1 934 167 11 80 chr12 31276293 31276364 -113006125 - L1MA4A LINE L1 -1949 4197 4123 859 240 115 5 chr12 31276528 31276745 -113005744 + MIR SINE MIR 22 262 0 4751 177 23 10 chr12 31276956 31277862 -113004627 + MER49 LTR ERV1 6 923 0 269 206 0 14 chr12 31278237 31278310 -113004179 + GA-rich Low_complexity Low_complexity 3 74 0 189 74 0 0 chr12 31278455 31278482 -113004007 + (TC)n Simple_repeat Simple_repeat 1 27 0 12585 151 45 6 chr12 31278613 31279296 -113003193 + L1MA2 LINE L1 2593 3248 -3056 2280 102 0 7 chr12 31279296 31279589 -113002900 + AluSg SINE Alu 1 291 -19 12585 151 45 6 chr12 31279589 31282489 -113000000 + L1MA2 LINE L1 3248 6304 0 457 337 128 32 chr12 31282543 31282917 -112999572 + L2 LINE L2 2857 3266 -6 1890 134 80 11 chr12 31285091 31285442 -112997047 + THE1C LTR MaLR 1 375 0 2161 138 0 0 chr12 31286256 31286553 -112995936 + AluSx SINE Alu 1 297 -15 278 123 18 0 chr12 31287423 31287480 -112995009 + GA-rich Low_complexity Low_complexity 2 59 0 207 0 0 0 chr12 31287515 31287538 -112994951 + (CTTTG)n Simple_repeat Simple_repeat 4 26 0 24 53 0 0 chr12 31289381 31289419 -112993070 + AT_rich Low_complexity Low_complexity 1 38 0 260 269 172 11 chr12 31290149 31290242 -112992247 + MIR SINE MIR 120 227 -35 1119 281 110 29 chr12 31290277 31290966 -112991523 + L2 LINE L2 2540 3307 -6 215 256 140 10 chr12 31291526 31291630 -112990859 - MIR SINE MIR -67 141 28 2258 116 0 0 chr12 31292683 31292984 -112989505 - AluSx SINE Alu -11 301 1 21 82 0 0 chr12 31293355 31293404 -112989085 + AT_rich Low_complexity Low_complexity 1 49 0 2170 114 7 0 chr12 31295354 31295660 -112986829 + AluSg SINE Alu 1 308 -2 26 82 0 0 chr12 31297005 31297066 -112985423 + AT_rich Low_complexity Low_complexity 1 61 0 290 175 79 16 chr12 31297487 31297550 -112984939 + MER103 DNA DNA 4 70 -96 1546 186 0 19 chr12 31297605 31297874 -112984615 + AluJo SINE Alu 39 302 -10 2963 103 26 7 chr12 31298531 31298995 -112983494 - L1MA2 LINE L1 0 6304 5832 2329 89 0 0 chr12 31299375 31299678 -112982811 + AluY SINE Alu 1 303 -8 26 74 0 0 chr12 31300173 31300227 -112982262 + AT_rich Low_complexity Low_complexity 1 54 0 287 279 25 0 chr12 31300370 31300449 -112982040 - MIR SINE MIR -71 137 57 215 348 114 38 chr12 31300590 31300748 -112981741 - MIR SINE MIR -59 203 34 6785 125 54 4 chr12 31300840 31302013 -112980476 + Tigger3b DNA MER2_type 1 1231 0 32 57 0 0 chr12 31302238 31302291 -112980198 + AT_rich Low_complexity Low_complexity 1 53 0 2111 113 0 0 chr12 31302342 31302624 -112979865 - AluSx SINE Alu -30 282 1 670 214 169 4 chr12 31302688 31302954 -112979535 + LTR37A LTR ERV1 115 424 -2 2362 82 3 25 chr12 31303076 31303394 -112979095 + AluY SINE Alu 1 311 0 1720 175 86 6 chr12 31303411 31303749 -112978740 + MLT1A1 LTR MaLR 1 365 0 2217 112 0 0 chr12 31305946 31306249 -112976240 + AluSx SINE Alu 1 303 -9 228 220 160 20 chr12 31308624 31308724 -112973765 - MIR3 SINE MIR -92 116 3 315 300 0 11 chr12 31308912 31309002 -112973487 + L1MEc LINE L1 2236 2324 -4072 271 146 0 0 chr12 31309003 31309044 -112973445 + 5S rRNA rRNA 2 42 -79 897 180 90 86 chr12 31309120 31309398 -112973091 - MLT1B LTR MaLR -96 294 16 701 212 6 6 chr12 31309411 31309576 -112972913 - L1ME2 LINE L1 -2 6162 5998 335 123 231 0 chr12 31309610 31309675 -112972814 + MADE1 DNA Mariner 1 80 0 190 288 62 12 chr12 31309714 31309794 -112972695 + MIR SINE MIR 57 140 -122 415 316 59 11 chr12 31310072 31310259 -112972230 - MIR SINE MIR -10 252 57 1494 184 33 11 chr12 31311418 31311741 -112970748 + MER61B LTR ERV1 2 425 0 3631 173 38 20 chr12 31312052 31312762 -112969727 - MER21B LTR ERV1 -2 861 139 1747 194 13 18 chr12 31312755 31313137 -112969352 + MER65C LTR ERV1 82 461 0 * 1856 171 21 16 chr12 31313647 31314073 -112968416 + L1M4c LINE L1 834 1261 -5123 1546 186 0 19 chr12 31314380 31314649 -112967840 - AluJo SINE Alu -10 302 39 290 175 79 16 chr12 31314704 31314767 -112967722 - MER103 DNA DNA -96 70 4 26 82 0 0 chr12 31315188 31315249 -112967240 + AT_rich Low_complexity Low_complexity 1 61 0 1949 107 8 0 chr12 31316594 31316856 -112965633 - AluSc SINE Alu -2 307 44 26 30 0 0 chr12 31316901 31316934 -112965555 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr12 31317988 31318016 -112964473 + AT_rich Low_complexity Low_complexity 1 28 0 2090 214 50 53 chr12 31318627 31318995 -112963494 - MLT1E LTR MaLR -8 585 218 1836 100 0 38 chr12 31318995 31319132 -112963357 + L1MA1 LINE L1 6018 6140 -162 2515 63 0 0 chr12 31319132 31319431 -112963058 + AluY SINE Alu 1 299 -12 1836 100 0 38 chr12 31319431 31319583 -112962906 + L1MA1 LINE L1 6140 6296 -6 2090 214 50 53 chr12 31319583 31319797 -112962692 - MLT1E LTR MaLR -375 218 5 3255 259 94 27 chr12 31320764 31322661 -112959828 + L2 LINE L2 1206 3313 0 500 341 14 27 chr12 31323145 31323438 -112959051 - ERVL LTR ERVL -4563 1201 913 2353 57 0 0 chr12 31323544 31323823 -112958666 - AluY SINE Alu -32 279 1 6547 95 14 0 chr12 31323825 31324894 -112957595 - L1PA13 LINE L1 -5 6158 5100 3874 128 40 11 chr12 31324894 31325590 -112956899 - L1PA16 LINE L1 -284 6585 5875 20494 87 10 2 chr12 31325628 31329092 -112953397 - L1PA7 LINE L1 -16 6453 2966 8219 114 21 16 chr12 31329094 31330334 -112952155 - L1PA7 LINE L1 -5211 1250 5 2153 205 47 2 chr12 31330341 31330833 -112951656 - L1PA16 LINE L1 -958 5891 5378 * 15818 157 13 19 chr12 31330811 31331404 -112951085 - L1PA16 LINE L1 -4283 2566 1971 2344 122 0 0 chr12 31331404 31331716 -112950773 - AluSx SINE Alu 0 312 1 15818 157 13 19 chr12 31331716 31333701 -112948788 - L1PA16 LINE L1 -4878 1971 2 732 180 90 66 chr12 31333704 31333948 -112948541 - L1M4c LINE L1 -4856 1528 1279 1994 195 25 42 chr12 31334192 31334757 -112947732 + pTR5 LTR ERV1 790 1344 -1094 4647 123 15 126 chr12 31334773 31335697 -112946792 + LTR12 LTR ERV1 5 826 0 1777 271 96 38 chr12 31335699 31336683 -112945806 + L1 LINE L1 2678 3718 -2428 433 115 44 133 chr12 31337095 31337208 -112945281 - MER53 DNA DNA -82 107 5 1630 233 45 31 chr12 31338038 31338527 -112943962 + L2 LINE L2 1557 2052 -1262 510 250 85 94 chr12 31338556 31339028 -112943461 - MLT1H LTR MaLR -19 530 1 655 176 17 25 chr12 31339087 31339206 -112943283 - FLAM_A SINE Alu -12 121 4 2547 260 104 18 chr12 31339218 31340274 -112942215 + L2 LINE L2 2074 3220 -93 331 277 75 75 chr12 31340369 31340651 -112941838 - MLT1J LTR MaLR 0 511 230 2131 150 0 0 chr12 31340945 31341251 -112941238 + AluSx SINE Alu 1 306 -6 979 219 44 133 chr12 31341628 31342148 -112940341 + L1MC4 LINE L1 7138 7611 -431 4026 210 32 48 chr12 31342148 31342410 -112940079 + Charlie1a DNA MER1_type 1 266 -2495 3066 90 7 48 chr12 31342410 31342865 -112939624 - L1MA2 LINE L1 0 6304 5869 4026 210 32 48 chr12 31342865 31343600 -112938889 + Charlie1a DNA MER1_type 266 982 -473 232 263 32 63 chr12 31343611 31343706 -112938783 - MIR SINE MIR -7 255 164 1654 177 35 7 chr12 31345669 31345957 -112936532 + AluJb SINE Alu 1 296 -16 767 233 20 0 chr12 31346034 31346184 -112936305 - MER58B DNA MER1_type 0 341 189 2114 118 0 16 chr12 31346192 31346497 -112935992 - AluSx SINE Alu -7 305 6 39770 40 0 2 chr12 31346612 31351367 -112931122 - L1P LINE L1 -1400 4746 1 225 295 26 13 chr12 31352213 31352291 -112930198 - MIR SINE MIR -112 150 72 198 184 41 41 chr12 31352919 31352968 -112929521 + MIR3 SINE MIR 7 55 -153 714 264 62 0 chr12 31352993 31353186 -112929303 - MIR SINE MIR -15 247 43 952 310 61 22 chr12 31353201 31353608 -112928881 + LTR16A LTR ERVL 18 440 -10 4481 164 28 19 chr12 31353744 31354523 -112927966 - MER21B LTR ERV1 -77 786 1 237 261 127 61 chr12 31354617 31354782 -112927707 + L2 LINE L2 1865 2040 -1274 506 335 74 54 chr12 31354786 31354994 -112927495 + L2 LINE L2 2205 2408 -906 1799 157 30 13 chr12 31354994 31355299 -112927190 - AluJb SINE Alu -2 310 1 506 335 74 54 chr12 31355299 31355606 -112926883 + L2 LINE L2 2408 2730 -584 2280 105 3 0 chr12 31355631 31355936 -112926553 - AluSp SINE Alu -7 306 1 294 361 56 0 chr12 31355970 31356078 -112926411 + MIR SINE MIR 2 115 -147 303 268 21 10 chr12 31356133 31356230 -112926259 + MLT1J1 LTR MaLR 54 151 -295 265 121 32 32 chr12 31356569 31356693 -112925796 + (CCCA)n Simple_repeat Simple_repeat 3 126 0 240 149 11 35 chr12 31356736 31356823 -112925666 + C-rich Low_complexity Low_complexity 6 90 0 196 83 0 0 chr12 31356999 31357023 -112925466 + (A)n Simple_repeat Simple_repeat 1 24 0 249 293 0 0 chr12 31357023 31357064 -112925425 + C-rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr12 31357592 31357615 -112924874 + AT_rich Low_complexity Low_complexity 1 23 0 282 262 106 35 chr12 31360983 31361124 -112921365 + L1ME LINE L1 5673 5823 -298 25 51 0 0 chr12 31361137 31361176 -112921313 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr12 31362140 31362161 -112920328 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr12 31362188 31362220 -112920269 + AT_rich Low_complexity Low_complexity 1 32 0 3341 160 71 6 chr12 31362537 31362957 -112919532 + L1MA7 LINE L1 5620 6096 -195 225 0 0 0 chr12 31362957 31362982 -112919507 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3341 160 71 6 chr12 31362982 31363192 -112919297 + L1MA7 LINE L1 6096 6291 0 216 0 0 0 chr12 31363750 31363774 -112918715 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2783 88 11 0 chr12 31366808 31367159 -112915330 - THE1A LTR MaLR 0 355 1 2627 151 46 12 chr12 31367548 31367960 -112914529 + MSTA LTR MaLR 3 428 0 2603 190 105 70 chr12 31369028 31369934 -112912555 - L1ME2 LINE L1 -3 6161 5188 552 194 15 8 chr12 31370310 31370444 -112912045 - L1ME2 LINE L1 -945 5201 5067 2293 160 29 75 chr12 31370447 31370928 -112911561 + MLT1C LTR MaLR 1 459 -8 220 288 47 108 chr12 31371610 31371781 -112910708 + L2 LINE L2 2933 3066 -206 2667 89 100 8 chr12 31371781 31372172 -112910317 - MSTA LTR MaLR 0 428 2 220 288 47 108 chr12 31372172 31372364 -112910125 + L2 LINE L2 3066 3268 -4 2122 175 5 56 chr12 31372438 31372849 -112909640 - MLT1B LTR MaLR 0 390 1 189 308 77 0 chr12 31373021 31373086 -112909403 - MIR SINE MIR -136 126 57 436 238 229 51 chr12 31373191 31373405 -112909084 - MIR SINE MIR -3 259 8 182 292 34 45 chr12 31373425 31373514 -112908975 - MIR SINE MIR -153 109 22 258 188 0 0 chr12 31374667 31374715 -112907774 + L2 LINE L2 3261 3308 -5 4190 159 33 11 chr12 31374759 31375601 -112906888 - L1MB4 LINE L1 0 6180 5320 1005 228 149 29 chr12 31375704 31375969 -112906520 + L2 LINE L2 2668 2900 -413 2752 191 2 6 chr12 31375969 31376457 -112906032 - MER66B LTR ERV1 0 486 1 1005 228 149 29 chr12 31376457 31376766 -112905723 + L2 LINE L2 2900 3313 0 260 303 50 5 chr12 31376993 31377160 -112905329 - L1ME LINE L1 -458 5712 5534 274 304 40 36 chr12 31377282 31377558 -112904931 + HAL1b LINE L1 661 937 -411 2286 110 0 0 chr12 31377694 31377993 -112904496 - AluSc SINE Alu -10 299 1 1106 172 0 0 chr12 31378028 31378202 -112904287 + AluJb SINE Alu 137 310 -2 366 204 0 0 chr12 31378215 31378303 -112904186 + GA-rich Low_complexity Low_complexity 3 90 0 1288 97 31 35 chr12 31378527 31378755 -112903734 + L1MA10 LINE L1 6101 6327 -7 404 336 58 41 chr12 31378758 31379151 -112903338 + L1M4 LINE L1 2235 2634 -3512 951 196 0 6 chr12 31379961 31380119 -112902370 + FRAM SINE Alu 1 152 -24 5028 72 37 7 chr12 31380729 31381432 -112901057 - L1PA11 LINE L1 0 6174 5451 699 221 22 54 chr12 31382384 31382607 -112899882 - L1ME1 LINE L1 -50 6116 5941 2476 165 24 0 chr12 31382727 31383145 -112899344 - MSTA LTR MaLR 0 428 1 744 206 0 21 chr12 31383177 31383318 -112899171 - FRAM SINE Alu -19 157 20 4060 202 42 31 chr12 31383349 31383455 -112899034 - L1MB7 LINE L1 -54 6130 6027 2343 101 0 0 chr12 31383455 31383763 -112898726 + AluSx SINE Alu 1 308 -4 4060 202 42 31 chr12 31383763 31384780 -112897709 - L1MB7 LINE L1 -157 6027 5023 2283 68 10 3 chr12 31384780 31385074 -112897415 + AluY SINE Alu 1 296 -15 4060 202 42 31 chr12 31385074 31385903 -112896586 - L1MB7 LINE L1 -1161 5023 4204 369 0 0 0 chr12 31385903 31385944 -112896545 + (TG)n Simple_repeat Simple_repeat 1 41 0 2091 94 14 4 chr12 31385944 31386220 -112896269 - AluSx SINE Alu -33 279 1 4060 202 42 31 chr12 31386220 31386309 -112896180 - L1MB7 LINE L1 -1979 4205 4066 1829 183 36 22 chr12 31386320 31386680 -112895809 - MLT1A1 LTR MaLR 0 365 1 324 0 0 0 chr12 31386691 31386727 -112895762 + (TG)n Simple_repeat Simple_repeat 2 37 0 986 185 11 17 chr12 31386733 31386911 -112895578 - AluJo SINE Alu -30 282 106 366 297 8 23 chr12 31387276 31387404 -112895085 - AluJo SINE Alu -176 126 1 321 269 32 0 chr12 31388241 31388334 -112894155 - MIR SINE MIR -64 144 49 384 320 8 8 chr12 31389100 31389222 -112893267 - MER5B DNA MER1_type -6 172 51 551 155 0 10 chr12 31389224 31389321 -112893168 - FLAM_A SINE Alu -15 127 32 349 130 0 0 chr12 31389323 31389377 -112893112 - MER5B DNA MER1_type -123 55 2 395 287 19 101 chr12 31389592 31389770 -112892719 + MIR SINE MIR 2 152 -110 2232 133 2 63 chr12 31389770 31390185 -112892304 - MLT1B LTR MaLR 0 390 1 395 287 19 101 chr12 31390185 31390274 -112892215 + MIR SINE MIR 152 247 -15 512 180 101 36 chr12 31390274 31390413 -112892076 + L1ME2 LINE L1 6015 6162 -2 24 32 0 0 chr12 31390829 31390860 -112891629 + AT_rich Low_complexity Low_complexity 1 31 0 205 256 0 0 chr12 31391124 31391167 -112891322 + (CATA)n Simple_repeat Simple_repeat 2 44 0 248 217 0 0 chr12 31391279 31391339 -112891150 + L1MA8 LINE L1 6060 6119 -172 1956 151 0 3 chr12 31391359 31391650 -112890839 + AluJo SINE Alu 6 295 -17 2378 72 0 7 chr12 31391698 31392004 -112890485 + AluY SINE Alu 1 304 -7 231 262 16 16 chr12 31392074 31392135 -112890354 + L2 LINE L2 3208 3268 -4 1022 188 24 0 chr12 31392243 31392456 -112890033 - MER57A LTR ERV1 -6 397 180 745 273 60 60 chr12 31392585 31393171 -112889318 + PABL_B LTR ERV1 82 667 0 815 129 122 0 chr12 31393175 31393322 -112889167 - MER57A LTR ERV1 -231 172 8 1497 128 23 0 chr12 31393324 31393582 -112888907 + L1MA6 LINE L1 6037 6300 0 25932 34 2 0 chr12 31393608 31397525 -112884964 - L1PA4 LINE L1 -7 6148 2227 1371 202 48 48 chr12 31398668 31399044 -112883445 - MLT1B LTR MaLR 0 390 15 2485 84 0 0 chr12 31400367 31400676 -112881813 + AluY SINE Alu 1 309 -2 193 290 0 16 chr12 31400710 31400772 -112881717 + L2 LINE L2 3249 3309 -4 333 305 73 33 chr12 31400807 31400958 -112881531 + MIR3 SINE MIR 21 177 -31 1982 162 59 0 chr12 31401034 31401422 -112881067 + L1MA4 LINE L1 5882 6292 -8 2508 81 0 17 chr12 31402104 31402452 -112880037 + L1PA8 LINE L1 5828 6169 -3 548 140 0 0 chr12 31402620 31402713 -112879776 + L1PA5 LINE L1 6044 6136 -18 1327 323 42 37 chr12 31402876 31403637 -112878852 - L3 LINE CR1 -378 1199 435 383 20 39 0 chr12 31403987 31404038 -112878451 + (TTATA)n Simple_repeat Simple_repeat 5 57 0 474 188 58 43 chr12 31404216 31404354 -112878135 - L1ME LINE L1 -452 5669 5530 213 347 121 0 chr12 31404400 31404524 -112877965 - L2 LINE L2 -1019 2295 2157 181 241 193 48 chr12 31404528 31404611 -112877878 - MIR3 SINE MIR -26 182 88 189 0 0 0 chr12 31405589 31405610 -112876879 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5226 134 37 32 chr12 31406785 31407703 -112874786 + MER49 LTR ERV1 1 923 0 2525 65 0 0 chr12 31408390 31408700 -112873789 + AluY SINE Alu 1 310 -1 261 156 0 0 chr12 31409736 31409781 -112872708 - Charlie8 DNA MER1_type -2252 165 121 2530 144 56 9 chr12 31410299 31410507 -112871982 - L1MA9 LINE L1 0 6312 6115 7246 121 43 7 chr12 31410507 31411695 -112870794 - Tigger3b DNA MER2_type 0 1231 1 2530 144 56 9 chr12 31411695 31411951 -112870538 - L1MA9 LINE L1 -197 6115 5826 2165 132 0 3 chr12 31411952 31412263 -112870226 + AluSg SINE Alu 1 310 0 228 216 0 0 chr12 31412263 31412314 -112870175 - L1MA9 LINE L1 -390 5793 5743 763 216 0 0 chr12 31412323 31412462 -112870027 + FRAM SINE Alu 18 156 -20 1812 131 19 0 chr12 31412479 31412791 -112869698 - L1MA9 LINE L1 -563 5749 5432 4962 106 31 1 chr12 31412811 31413462 -112869027 - L1PB1 LINE L1 0 6867 6188 189 0 0 0 chr12 31413462 31413483 -112869006 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4962 106 31 1 chr12 31413483 31413607 -112868882 - L1PB1 LINE L1 -679 6188 6069 1492 104 0 0 chr12 31413609 31413810 -112868679 - AluY SINE Alu 0 311 111 903 56 0 0 chr12 31413905 31414012 -112868477 - AluY SINE Alu -204 107 1 9159 211 15 10 chr12 31414012 31416274 -112866215 - L1PB1 LINE L1 -779 6083 3811 437 200 0 0 chr12 31416289 31416374 -112866115 - L1PB1 LINE L1 -6073 790 706 * 11368 184 96 20 chr12 31416364 31420178 -112862311 - L1PBa LINE L1 -2422 4440 302 2366 102 0 0 chr12 31420178 31420481 -112862008 - AluSg SINE Alu -7 303 1 11368 184 96 20 chr12 31420481 31420686 -112861803 - L1PBa LINE L1 -6560 302 114 21 0 0 0 chr12 31420746 31420767 -112861722 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr12 31420827 31420862 -112861627 + AT_rich Low_complexity Low_complexity 1 35 0 248 324 29 19 chr12 31421723 31421828 -112860661 + MIR SINE MIR 37 142 -66 2305 151 50 24 chr12 31423562 31423985 -112858504 + Tigger2a DNA MER2_type 1 434 0 354 98 0 0 chr12 31424259 31424310 -112858179 + (CA)n Simple_repeat Simple_repeat 1 51 0 251 97 48 16 chr12 31424404 31424466 -112858023 + (TA)n Simple_repeat Simple_repeat 1 64 0 244 189 18 117 chr12 31425201 31425312 -112857177 - L2 LINE L2 -77 3236 3137 188 369 39 39 chr12 31426670 31426773 -112855716 + L2 LINE L2 3137 3239 -33 202 189 19 19 chr12 31427116 31427169 -112855320 + (TA)n Simple_repeat Simple_repeat 2 54 0 997 238 30 5 chr12 31427262 31427508 -112854981 - MIR SINE MIR 0 262 14 1880 146 3 13 chr12 31428592 31428893 -112853596 + AluSx SINE Alu 1 298 -14 1890 153 10 0 chr12 31429033 31429328 -112853161 + AluSx SINE Alu 1 298 -14 629 235 159 39 chr12 31429331 31429722 -112852767 + MLT1H LTR MaLR 79 527 -15 2422 74 7 0 chr12 31430165 31430474 -112852015 - AluY SINE Alu 0 311 1 546 231 34 62 chr12 31431280 31431443 -112851046 + MLT1H LTR MaLR 1 80 -450 2080 123 14 3 chr12 31431443 31431736 -112850753 + AluJb SINE Alu 1 296 -16 546 231 34 62 chr12 31431736 31431803 -112850686 + MLT1H LTR MaLR 80 147 -383 4569 225 71 16 chr12 31431941 31433271 -112849218 + L1 LINE L1 2121 3524 -2622 1373 211 4 7 chr12 31433388 31433658 -112848831 + AluJo SINE Alu 6 274 -38 2353 11 7 0 chr12 31434033 31434305 -112848184 + L1PA2 LINE L1 5881 6154 -1 412 220 66 0 chr12 31434373 31434464 -112848025 + Tigger3b DNA MER2_type 6 102 -1129 * 4666 100 144 13 chr12 31434463 31435285 -112847204 + Tigger3b DNA MER2_type 279 1207 -24 2475 90 20 0 chr12 31435897 31436243 -112846246 + L1PA13 LINE L1 5794 6146 -17 4912 147 23 50 chr12 31436258 31437347 -112845142 + L1MB3 LINE L1 5122 6182 -1 1875 180 0 0 chr12 31437940 31438234 -112844255 - AluJb SINE Alu -18 294 1 990 203 100 80 chr12 31438714 31439063 -112843426 + MER76 LTR ERV 331 686 -2 11045 174 96 14 chr12 31439087 31441757 -112840732 + L1M4c LINE L1 19 2909 -3473 399 206 21 21 chr12 31441758 31441855 -112840634 + pTR5 LTR ERV1 743 839 -1599 301 314 122 21 chr12 31442931 31443119 -112839370 - L1ME LINE L1 -282 5839 5633 22 35 0 0 chr12 31443466 31443495 -112838994 + AT_rich Low_complexity Low_complexity 1 29 0 468 293 64 6 chr12 31443499 31443656 -112838833 + HAL1 LINE L1 4 169 -2338 705 187 64 41 chr12 31443734 31443905 -112838584 + MIR SINE MIR 1 175 -87 498 224 153 90 chr12 31444021 31444244 -112838245 + MIR SINE MIR 26 262 0 187 298 133 46 chr12 31444489 31444640 -112837849 - MIR3 SINE MIR -22 186 23 23 33 0 0 chr12 31445092 31445122 -112837367 + AT_rich Low_complexity Low_complexity 1 30 0 571 233 19 92 chr12 31445769 31445975 -112836514 + L2 LINE L2 3119 3309 -4 2211 105 6 13 chr12 31446479 31446792 -112835697 + AluSx SINE Alu 1 311 -1 545 174 181 7 chr12 31446811 31446949 -112835540 - L1M4b LINE L1 -5907 952 791 1433 207 10 21 chr12 31447049 31447339 -112835150 - AluJo SINE Alu -17 295 9 1608 170 26 42 chr12 31447615 31447965 -112834524 - MSTB2 LTR MaLR -114 319 1 249 183 33 17 chr12 31448083 31448143 -112834346 - L1MC5 LINE L1 -593 7368 7308 246 143 24 24 chr12 31448144 31448186 -112834303 - Alu SINE Alu -39 260 219 846 198 172 104 chr12 31448251 31448733 -112833756 - L1MD3 LINE L1 -788 7173 6671 227 129 29 29 chr12 31448735 31448805 -112833684 + (TA)n Simple_repeat Simple_repeat 2 71 0 1037 199 5 0 chr12 31448992 31449188 -112833301 - L1PA16 LINE L1 -16 6150 5954 2198 100 0 23 chr12 31449211 31449520 -112832969 - AluSq SINE Alu -11 302 1 319 278 101 98 chr12 31449521 31449867 -112832622 - L1MC4a LINE L1 -1227 6581 6235 435 103 0 0 chr12 31449875 31449943 -112832546 + Alu SINE Alu 244 311 0 361 262 218 25 chr12 31449966 31450241 -112832248 - L1MC4a LINE L1 -1651 6157 5830 238 216 144 0 chr12 31450357 31450468 -112832021 + L1MB8 LINE L1 1500 1626 -5233 2235 108 3 0 chr12 31450468 31450764 -112831725 + AluSx SINE Alu 1 297 -15 6422 215 72 11 chr12 31450810 31451244 -112831245 + L1MB8 LINE L1 3846 4252 -2705 200 33 0 33 chr12 31451244 31451274 -112831215 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6422 215 72 11 chr12 31451274 31452790 -112829699 + L1MB8 LINE L1 4252 5914 -1043 1051 145 58 4 chr12 31452792 31453001 -112829488 + AluJb SINE Alu 1 304 -8 3342 167 140 12 chr12 31453002 31453948 -112828541 + L1MB8 LINE L1 5911 6984 -5 2350 58 0 17 chr12 31455251 31455544 -112826945 - AluY SINE Alu -23 288 1 29 0 0 0 chr12 31455838 31455867 -112826622 + AT_rich Low_complexity Low_complexity 1 29 0 1512 101 48 0 chr12 31457321 31457548 -112824941 + L1MA5A LINE L1 6038 6275 -22 2242 103 13 0 chr12 31458431 31458732 -112823757 - AluSq SINE Alu -8 305 1 623 210 108 45 chr12 31459424 31459471 -112823018 + MER58B DNA MER1_type 1 44 -297 2397 89 3 0 chr12 31459471 31459773 -112822716 - AluSp SINE Alu -10 303 1 623 210 108 45 chr12 31459773 31459901 -112822588 + MER58B DNA MER1_type 44 187 -154 2055 191 30 74 chr12 31460477 31461005 -112821484 + MLT1D LTR MaLR 1 505 0 443 255 43 35 chr12 31461384 31461525 -112820964 + LTR67 LTR ERVL 412 553 -4 1328 262 136 16 chr12 31461591 31462075 -112820414 + MLT1F LTR MaLR 1 542 0 315 278 55 7 chr12 31462321 31462505 -112819984 - MLT1G1 LTR MaLR 0 595 354 7470 32 1 1 chr12 31463229 31464254 -112818235 + L1PA4 LINE L1 5128 6152 -3 27 0 0 0 chr12 31464254 31464281 -112818208 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr12 31464320 31464340 -112818149 + (A)n Simple_repeat Simple_repeat 1 20 0 339 364 64 18 chr12 31464360 31464753 -112817736 - MLT1C LTR MaLR -8 459 49 577 246 72 58 chr12 31465036 31465312 -112817177 - L2 LINE L2 -129 3184 2905 3092 95 51 0 chr12 31465397 31465828 -112816661 - MLT2A2 LTR ERVL 0 453 1 2785 126 7 30 chr12 31465842 31466278 -112816211 + MSTB LTR MaLR 1 426 0 518 247 81 23 chr12 31466315 31466489 -112816000 + MER5A DNA MER1_type 4 187 -2 1826 45 0 18 chr12 31467491 31467711 -112814778 - AluY SINE Alu -10 301 86 203 162 0 27 chr12 31468029 31468066 -112814423 + L3 LINE CR1 1443 1478 -99 1998 126 0 68 chr12 31468131 31468457 -112814032 - AluSx SINE Alu -7 305 2 370 212 12 0 chr12 31468528 31468613 -112813876 + L1 LINE L1 5057 5142 -1004 * 3494 94 5 7 chr12 31468581 31469154 -112813335 + L1P4 LINE L1 5168 5741 -422 306 276 48 35 chr12 31470211 31470356 -112812133 - L1ME3A LINE L1 -203 5967 5821 1985 128 21 0 chr12 31470365 31470653 -112811836 - AluSx SINE Alu -16 296 3 1836 125 0 7 chr12 31470657 31470929 -112811560 - AluSx SINE Alu -9 303 34 18474 155 13 9 chr12 31470929 31471225 -112811264 + L1P LINE L1 2093 2386 -3760 2346 107 0 3 chr12 31471225 31471534 -112810955 + AluY SINE Alu 1 308 -3 18474 155 13 9 chr12 31471534 31474535 -112807954 + L1P LINE L1 2386 5403 -743 1063 112 0 0 chr12 31474535 31474678 -112807811 + LTR8 LTR ERV1 548 690 -1 6370 106 36 3 chr12 31474679 31475567 -112806922 + HUERS-P1 LTR ERV1 1 917 -5346 2393 116 9 3 chr12 31475571 31475906 -112806583 + HUERS-P1 LTR ERV1 1427 1763 -4500 862 263 54 119 chr12 31476016 31476545 -112805944 + MLT1G LTR MaLR 96 574 -16 207 220 0 0 chr12 31476595 31476645 -112805844 + (CA)n Simple_repeat Simple_repeat 1 50 0 1757 175 0 0 chr12 31477044 31477329 -112805160 + AluJo SINE Alu 1 285 -27 23 33 0 0 chr12 31477329 31477359 -112805130 + AT_rich Low_complexity Low_complexity 1 30 0 361 278 31 0 chr12 31477885 31477982 -112804507 + MIR SINE MIR 57 156 -106 530 292 42 54 chr12 31477985 31478025 -112804464 - MIR SINE MIR -16 246 207 2152 104 24 3 chr12 31478025 31478322 -112804167 - AluY SINE Alu -8 303 1 530 292 42 54 chr12 31478322 31478521 -112803968 - MIR SINE MIR -55 207 10 192 194 45 45 chr12 31478529 31478596 -112803893 + MIR SINE MIR 159 225 -37 235 160 11 43 chr12 31479535 31479629 -112802860 + GA-rich Low_complexity Low_complexity 2 92 0 2059 161 89 13 chr12 31479971 31480431 -112802058 - Charlie1 DNA MER1_type 0 2761 2267 8822 130 10 8 chr12 31480548 31481862 -112800627 - THE1A-int LTR MaLR -263 1317 1 2573 110 32 3 chr12 31481862 31482207 -112800282 - THE1A LTR MaLR 0 355 1 6905 214 25 22 chr12 31482211 31483866 -112798623 - L1 LINE L1 -2286 3860 2202 21 0 0 0 chr12 31484326 31484347 -112798142 + AT_rich Low_complexity Low_complexity 1 21 0 468 232 36 0 chr12 31484475 31484587 -112797902 - MIR SINE MIR -63 199 84 3663 80 0 0 chr12 31484743 31485195 -112797294 + L1PA5 LINE L1 5701 6152 -2 189 276 11 81 chr12 31485521 31485548 -112796941 - MIR3 SINE MIR -30 178 151 1666 135 4 12 chr12 31485548 31485807 -112796682 + AluSq SINE Alu 40 296 -17 189 276 11 81 chr12 31485807 31485866 -112796623 - MIR3 SINE MIR -57 151 98 493 278 183 6 chr12 31485944 31486124 -112796365 + MIR SINE MIR 23 234 -28 813 109 0 0 chr12 31486617 31486736 -112795753 + L1MA9 LINE L1 6189 6307 -5 1930 221 88 23 chr12 31488820 31489369 -112793120 - MER77 LTR ERV1 -8 597 38 1335 297 72 6 chr12 31489680 31490049 -112792440 - L1M4 LINE L1 -808 5338 4995 180 0 0 0 chr12 31490049 31490069 -112792420 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1335 297 72 6 chr12 31490069 31490363 -112792126 - L1M4 LINE L1 -1151 4995 4631 * 3006 247 42 36 chr12 31490358 31491575 -112790914 - L1MC3 LINE L1 -2 7806 6604 240 35 0 0 chr12 31491581 31491610 -112790879 + (TG)n Simple_repeat Simple_repeat 2 30 0 1210 246 96 38 chr12 31491616 31491982 -112790507 - MSTD LTR MaLR -9 387 1 399 287 9 43 chr12 31492110 31492225 -112790264 - MIR SINE MIR -61 147 37 360 181 65 51 chr12 31493005 31493143 -112789346 + L1MC5 LINE L1 7588 7727 -234 1432 170 0 60 chr12 31493161 31493443 -112789046 + AluSx SINE Alu 39 303 -9 455 277 10 62 chr12 31493444 31493639 -112788850 + L1MC5 LINE L1 7716 7900 -61 2205 109 0 10 chr12 31493961 31494264 -112788225 - AluSg SINE Alu -10 300 1 2951 104 10 2 chr12 31494265 31494679 -112787810 - MSTA-int LTR MaLR -1157 423 7 4015 196 11 16 chr12 31494810 31494884 -112787605 - L1 LINE L1 -1444 4702 4629 2209 125 3 0 chr12 31494884 31495195 -112787294 - AluSx SINE Alu 0 312 1 4015 196 11 16 chr12 31495195 31495967 -112786522 - L1 LINE L1 -1517 4629 3861 63 67 0 0 chr12 31496057 31496176 -112786313 + GC_rich Low_complexity Low_complexity 1 119 0 211 170 38 19 chr12 31496228 31496334 -112786155 + C-rich Low_complexity Low_complexity 1 108 0 180 0 0 0 chr12 31496585 31496605 -112785884 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 2387 154 70 5 chr12 31497442 31497844 -112784645 - MSTA LTR MaLR 0 428 1 253 29 0 29 chr12 31498110 31498144 -112784345 - L1P1 LINE L1 -585 5570 5538 * 4654 54 2 1 chr12 31498142 31499067 -112783422 + L1P2 LINE L1 4826 5750 -404 1323 119 44 19 chr12 31499293 31499602 -112782887 + L1M1 LINE L1 5156 5478 -743 6243 155 30 12 chr12 31499621 31500617 -112781872 - L1M1 LINE L1 -5471 2094 1081 1477 159 0 4 chr12 31500722 31500949 -112781540 - L1P3 LINE L1 -6226 235 10 683 230 9 74 chr12 31501195 31501412 -112781077 - LTR26 LTR ERV1 0 603 401 3036 152 19 6 chr12 31501416 31501929 -112780560 - L1PA10 LINE L1 0 6168 5649 420 226 0 0 chr12 31502036 31502191 -112780298 + C-rich Low_complexity Low_complexity 1 155 0 3282 175 23 65 chr12 31502351 31503094 -112779395 + MER21-int LTR ERV1 5887 6598 0 342 0 0 0 chr12 31503154 31503192 -112779297 + (CA)n Simple_repeat Simple_repeat 1 38 0 1945 69 16 0 chr12 31503521 31503767 -112778722 + L1PA7 LINE L1 5905 6154 0 426 270 0 40 chr12 31504060 31504208 -112778281 + AluJo SINE Alu 2 143 -169 3445 191 76 78 chr12 31604565 31604799 -112677690 - MER21B-int LTR ERV1 -2312 4446 4213 2107 128 0 0 chr12 31604799 31605087 -112677402 + AluSx SINE Alu 1 288 -24 3445 191 76 78 chr12 31605087 31605777 -112676712 - MER21B-int LTR ERV1 -2545 4213 3524 456 74 0 0 chr12 31605781 31605835 -112676654 + AluSq/x SINE Alu 66 119 -193 1219 154 84 22 chr12 31605844 31606071 -112676418 + AluSx SINE Alu 55 295 -17 473 229 17 8 chr12 31606071 31606189 -112676300 + MER21-int LTR ERV1 416 534 -3657 2181 186 30 2 chr12 31606197 31606596 -112675893 - MER21B-int LTR ERV1 -3764 427 18 447 248 174 6 chr12 31606601 31606762 -112675727 - MER21B LTR ERV1 -62 801 614 1680 144 133 32 chr12 31606775 31606841 -112675648 - MSTB1 LTR MaLR 0 432 374 1689 174 10 3 chr12 31606841 31606976 -112675513 + AluJb SINE Alu 1 134 -178 2259 93 13 0 chr12 31606976 31607277 -112675212 + AluSp SINE Alu 1 305 -8 1689 174 10 3 chr12 31607277 31607435 -112675054 + AluJb SINE Alu 134 296 -16 1680 144 133 32 chr12 31607435 31607715 -112674774 - MSTB1 LTR MaLR -58 374 51 649 231 99 58 chr12 31607769 31608011 -112674478 - MER21B LTR ERV1 -283 580 329 2132 124 10 0 chr12 31608028 31608335 -112674154 - AluSx SINE Alu -2 310 1 416 275 55 44 chr12 31608338 31608557 -112673932 - L1MEd LINE L1 -2697 3432 3206 1756 176 0 16 chr12 31608557 31608864 -112673625 - AluJb SINE Alu -10 302 1 416 275 55 44 chr12 31608864 31609008 -112673481 - L1MEd LINE L1 -2923 3206 3065 312 224 0 0 chr12 31609043 31609110 -112673379 - L1MEd LINE L1 -3151 2978 2912 198 0 0 0 chr12 31609110 31609132 -112673357 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1779 168 3 3 chr12 31609132 31609417 -112673072 - AluJo SINE Alu -27 285 1 1608 127 68 55 chr12 31609754 31610046 -112672443 - AluJo SINE Alu -16 296 1 247 301 10 29 chr12 31610171 31610274 -112672215 - L1MEd LINE L1 -4751 1559 1459 671 277 52 60 chr12 31610280 31610665 -112671824 - L1MEd LINE L1 -4780 1530 1143 2232 131 0 0 chr12 31610665 31610977 -112671512 - AluSx SINE Alu 0 312 1 671 277 52 60 chr12 31610977 31611025 -112671464 - L1MEd LINE L1 -5167 1143 1096 2089 108 18 3 chr12 31611025 31611311 -112671178 - AluSc SINE Alu -19 290 1 671 277 52 60 chr12 31611311 31611416 -112671073 - L1MEd LINE L1 -5214 1096 972 2118 117 10 0 chr12 31611724 31612015 -112670474 + AluSx SINE Alu 1 294 -18 2058 123 3 16 chr12 31612526 31612836 -112669653 + AluSx SINE Alu 3 308 -4 219 285 237 24 chr12 31613004 31613211 -112669278 - L2 LINE L2 -218 3054 2804 2148 100 0 23 chr12 31613424 31613724 -112668765 + AluSq SINE Alu 1 293 -20 285 344 42 0 chr12 31613886 31613982 -112668507 - L2 LINE L2 0 3272 3173 1946 149 13 7 chr12 31614103 31614412 -112668077 - AluSx SINE Alu -1 311 1 2244 118 10 0 chr12 31614412 31614715 -112667774 - AluSq SINE Alu -6 307 1 1075 224 112 10 chr12 31615604 31615908 -112666581 + MER46C DNA MER2_type 1 335 -3 630 110 22 0 chr12 31616223 31616314 -112666175 + AluSg/x SINE Alu 210 302 -8 2148 112 3 0 chr12 31616366 31616653 -112665836 + AluSq SINE Alu 1 288 -25 1763 119 18 25 chr12 31617799 31618077 -112664412 + AluSc SINE Alu 1 276 -33 754 241 21 21 chr12 31618198 31618385 -112664104 + MLT1E1 LTR MaLR 468 654 0 508 256 111 56 chr12 31618626 31618860 -112663629 + L2 LINE L2 2996 3242 -71 341 186 0 29 chr12 31618862 31618932 -112663557 - MLT1J1 LTR MaLR -2 593 486 667 200 82 7 chr12 31618939 31619074 -112663415 - FRAM SINE Alu -12 164 20 359 178 0 0 chr12 31619104 31619163 -112663326 - Alu SINE Alu -249 53 1 207 299 37 52 chr12 31619224 31619358 -112663131 - L2 LINE L2 -919 2395 2264 936 210 194 24 chr12 31621062 31621314 -112661175 + AluJo SINE Alu 1 295 -7 1586 273 83 57 chr12 31621317 31622017 -112660472 + MER21B LTR ERV1 17 734 -129 831 69 0 0 chr12 31622092 31622193 -112660296 + HY3 scRNA scRNA 1 101 0 29 0 0 0 chr12 31622193 31622222 -112660267 + AT_rich Low_complexity Low_complexity 1 29 0 1670 171 11 18 chr12 31622368 31622654 -112659835 + AluJb SINE Alu 6 289 -23 198 0 0 0 chr12 31622655 31622677 -112659812 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2107 128 10 3 chr12 31622960 31623257 -112659232 + AluSx SINE Alu 1 299 -13 453 267 184 24 chr12 31623423 31623703 -112658786 - MLT1J1 LTR MaLR -18 428 99 1809 157 32 0 chr12 31624939 31625220 -112657269 - AluJb SINE Alu -22 290 1 2383 86 7 0 chr12 31626159 31626462 -112656027 - AluSg SINE Alu -4 306 2 1730 146 81 68 chr12 31626531 31626695 -112655794 - L1MC3 LINE L1 -32 7753 7592 2312 109 3 0 chr12 31626695 31627006 -112655483 - AluSq SINE Alu -1 312 1 1730 146 81 68 chr12 31627006 31627042 -112655447 - L1MC3 LINE L1 -193 7592 7558 2728 116 16 3 chr12 31627042 31627412 -112655077 - THE1C LTR MaLR 0 375 1 1730 146 81 68 chr12 31627412 31627620 -112654869 - L1MC3 LINE L1 -227 7558 7339 968 213 9 20 chr12 31627603 31627824 -112654665 - L1MC/D LINE L1 -2161 5624 5406 * 2041 157 7 0 chr12 31627792 31628098 -112654391 - AluSx SINE Alu -4 308 1 321 190 0 17 chr12 31628137 31628148 -112654341 - MER46A DNA MER2_type -83 153 144 476 164 14 0 chr12 31628148 31628221 -112654268 + MER46A DNA MER2_type 2 75 -161 1135 132 198 5 chr12 31628291 31628488 -112654001 + MER46A DNA MER2_type 2 236 0 2246 125 0 0 chr12 31629500 31629805 -112652684 - AluSx SINE Alu -7 305 1 1693 169 26 7 chr12 31630755 31631057 -112651432 + AluJb SINE Alu 2 309 -3 741 205 8 0 chr12 31631057 31631179 -112651310 + AluJb SINE Alu 134 256 -56 348 130 0 29 chr12 31631575 31631644 -112650845 + AluJb SINE Alu 235 301 -1 585 299 116 9 chr12 31631694 31631918 -112650571 - MIR SINE MIR 0 262 15 288 77 0 0 chr12 31632146 31632185 -112650304 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 901 197 0 0 chr12 31632185 31632332 -112650157 - AluJb SINE Alu -32 280 134 1631 223 53 27 chr12 31632332 31632367 -112650122 - L1ME1 LINE L1 -11 6155 6122 2445 81 0 0 chr12 31632367 31632662 -112649827 + AluSx SINE Alu 1 295 -17 1631 223 53 27 chr12 31632662 31633038 -112649451 - L1ME1 LINE L1 -44 6122 5733 321 188 50 40 chr12 31633043 31633144 -112649345 - LTR41 LTR ERVL -16 757 656 1581 147 0 19 chr12 31633144 31633402 -112649087 + AluJb SINE Alu 11 263 -49 595 111 0 0 chr12 31634425 31634506 -112647983 + U5 snRNA snRNA 1 81 -35 2170 117 0 7 chr12 31634514 31634813 -112647676 - AluSc SINE Alu -12 297 1 12090 144 25 31 chr12 31634813 31636164 -112646325 - L1MA3 LINE L1 -354 5951 4593 1936 146 0 0 chr12 31636164 31636444 -112646045 - AluSx SINE Alu -32 280 1 12090 144 25 31 chr12 31636444 31637919 -112644570 - L1MA3 LINE L1 -1712 4593 3059 2195 125 0 6 chr12 31637919 31638230 -112644259 - AluSx SINE Alu -3 309 1 12090 144 25 31 chr12 31638230 31638659 -112643830 - L1MA3 LINE L1 -3246 3059 2629 270 241 0 0 chr12 31638776 31638830 -112643659 + MIR SINE MIR 206 259 -3 254 247 0 56 chr12 31639256 31639345 -112643144 + CT-rich Low_complexity Low_complexity 6 89 0 1877 139 60 117 chr12 31639515 31639585 -112642904 - MSTB1 LTR MaLR 0 432 360 1632 147 17 51 chr12 31639585 31639878 -112642611 + AluJo SINE Alu 1 283 -29 1877 139 60 117 chr12 31639878 31640260 -112642229 - MSTB1 LTR MaLR -72 360 6 26 50 0 0 chr12 31641542 31641582 -112640907 + AT_rich Low_complexity Low_complexity 1 40 0 2324 224 97 48 chr12 31642045 31642589 -112639900 + L2 LINE L2 2022 2538 -775 2350 97 10 6 chr12 31642589 31642900 -112639589 - AluSx SINE Alu 0 312 1 2324 224 97 48 chr12 31642900 31643449 -112639040 + L2 LINE L2 2538 3185 -128 1824 159 51 21 chr12 31643449 31643783 -112638706 - MER2 DNA MER2_type 0 344 1 2324 224 97 48 chr12 31643783 31643917 -112638572 + L2 LINE L2 3185 3311 -2 224 333 0 38 chr12 31644608 31644791 -112637698 + CT-rich Low_complexity Low_complexity 3 178 0 * 401 306 0 0 chr12 31644663 31644833 -112637656 + T-rich Low_complexity Low_complexity 1 170 0 182 214 255 90 chr12 31645287 31645432 -112637057 + MIR3 SINE MIR 1 169 -39 1302 216 70 43 chr12 31645546 31645875 -112636614 - MER2 DNA MER2_type -1 344 7 2396 80 10 3 chr12 31645991 31646290 -112636199 - AluSx SINE Alu -11 301 1 868 137 0 0 chr12 31647196 31647313 -112635176 + FLAM_C SINE Alu 1 117 -26 29 0 0 0 chr12 31647321 31647350 -112635139 + AT_rich Low_complexity Low_complexity 1 29 0 2203 102 14 0 chr12 31648273 31648568 -112633921 + AluSx SINE Alu 9 307 -5 24 0 0 0 chr12 31649126 31649150 -112633339 + AT_rich Low_complexity Low_complexity 1 24 0 2401 86 0 0 chr12 31649368 31649670 -112632819 - AluSx SINE Alu -10 302 1 929 288 152 32 chr12 31649695 31650230 -112632259 + L2 LINE L2 2726 3313 0 1709 147 7 20 chr12 31650448 31650740 -112631749 + AluSx SINE Alu 20 307 -5 650 148 41 163 chr12 31650759 31650955 -112631534 - LTR54 LTR ERV1 -193 317 146 3240 145 32 0 chr12 31651040 31651536 -112630953 + MER41E LTR ERV1 1 512 0 761 156 28 14 chr12 31651540 31651681 -112630808 - LTR54 LTR ERV1 -367 143 1 187 264 44 77 chr12 31651725 31651816 -112630673 - MIR SINE MIR -12 250 163 454 56 169 0 chr12 31651827 31651898 -112630591 - MER21A LTR ERV1 -27 904 822 865 185 17 29 chr12 31651901 31652074 -112630415 + AluJb SINE Alu 119 289 -23 1301 165 91 8 chr12 31652131 31652374 -112630115 - MER21B LTR ERV1 -138 725 463 873 145 8 0 chr12 31652375 31652506 -112629983 + AluSg/x SINE Alu 146 277 -33 192 77 0 0 chr12 31652506 31652532 -112629957 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 2220 102 0 0 chr12 31652533 31652817 -112629672 + AluSc SINE Alu 1 284 -25 2525 162 73 7 chr12 31652824 31653263 -112629226 - MER21B LTR ERV1 -395 468 1 186 143 0 0 chr12 31653292 31653320 -112629169 - MIR SINE MIR -63 145 118 1381 165 43 18 chr12 31655619 31655898 -112626591 - AluJb SINE Alu -26 286 1 1875 176 0 13 chr12 31656210 31656522 -112625967 - AluSx SINE Alu -4 308 1 583 179 0 0 chr12 31656779 31656874 -112625615 + L1MB5 LINE L1 6080 6174 0 198 0 0 0 chr12 31657201 31657223 -112625266 + (T)n Simple_repeat Simple_repeat 1 22 0 470 250 83 23 chr12 31657379 31657511 -112624978 + MLT1H LTR MaLR 101 240 -309 2094 106 0 11 chr12 31657529 31657811 -112624678 + AluSx SINE Alu 1 279 -33 198 174 0 0 chr12 31657845 31657891 -112624598 + A-rich Low_complexity Low_complexity 1 46 0 1755 227 122 13 chr12 31658093 31658691 -112623798 + L1MD3 LINE L1 5343 6005 -1990 * 2254 179 67 12 chr12 31658350 31658859 -112623630 + L1MB8 LINE L1 5642 6178 0 1563 192 3 10 chr12 31658869 31659160 -112623329 + AluJb SINE Alu 1 289 -23 2106 119 3 23 chr12 31659757 31660060 -112622429 + AluSx SINE Alu 1 297 -15 1506 174 60 28 chr12 31660075 31660357 -112622132 + AluJo SINE Alu 3 293 -19 989 187 0 0 chr12 31660382 31660532 -112621957 + FRAM SINE Alu 1 150 -16 21 82 0 0 chr12 31660561 31660610 -112621879 + AT_rich Low_complexity Low_complexity 1 49 0 1693 163 30 20 chr12 31661426 31661721 -112620768 + AluJb SINE Alu 5 302 -10 862 200 0 39 chr12 31662004 31662184 -112620305 + AluJb SINE Alu 129 301 -11 290 267 91 79 chr12 31663479 31663644 -112618845 - MIR3 SINE MIR -11 197 31 1083 105 23 18 chr12 31664998 31665169 -112617320 - L1MB7 LINE L1 0 6184 6013 1998 206 19 45 chr12 31665961 31666432 -112616057 - MLT1C LTR MaLR -3 464 6 2058 131 3 3 chr12 31666527 31666817 -112615672 - AluSx SINE Alu -18 294 5 231 278 28 9 chr12 31666903 31667011 -112615478 + L1MC4 LINE L1 7933 8042 0 773 186 0 0 chr12 31667812 31667936 -112614553 - AluJ SINE Alu -1 311 188 1371 33 0 0 chr12 31667973 31668124 -112614365 - L1PA3 LINE L1 -3 6152 6002 2495 72 7 3 chr12 31668127 31668669 -112613820 - LTR10E LTR ERV1 -12 621 1 1185 176 0 0 chr12 31668671 31668859 -112613630 - AluJ SINE Alu -120 192 5 21 57 0 0 chr12 31668919 31668954 -112613535 + AT_rich Low_complexity Low_complexity 1 35 0 669 202 17 0 chr12 31668954 31669073 -112613416 - FLAM_C SINE Alu -11 122 2 2384 183 36 5 chr12 31669255 31669676 -112612813 - Tigger2a DNA MER2_type 0 434 1 2420 89 0 16 chr12 31669705 31670020 -112612469 - AluSq SINE Alu -3 310 1 736 164 9 0 chr12 31670020 31670136 -112612353 - FLAM_A SINE Alu -12 130 14 628 188 0 62 chr12 31670169 31670297 -112612192 + FLAM_C SINE Alu 10 129 -14 1041 151 6 18 chr12 31670331 31670497 -112611992 + AluSx SINE Alu 1 164 -148 1552 184 21 7 chr12 31672221 31672504 -112609985 - AluJb SINE Alu -21 291 5 22 35 0 0 chr12 31672597 31672626 -112609863 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr12 31672843 31672875 -112609614 + AT_rich Low_complexity Low_complexity 1 32 0 2301 98 0 3 chr12 31673689 31673984 -112608505 - AluSg SINE Alu -16 294 1 994 181 11 28 chr12 31674119 31674296 -112608193 - FAM SINE Alu 0 175 2 428 313 27 80 chr12 31674296 31674520 -112607969 + MIR SINE MIR 18 229 -33 755 177 0 21 chr12 31674775 31674916 -112607573 - AluSg/x SINE Alu 0 309 172 32 0 0 0 chr12 31674959 31674991 -112607498 + AT_rich Low_complexity Low_complexity 1 32 0 79 12 0 0 chr12 31675001 31675087 -112607402 + GC_rich Low_complexity Low_complexity 1 86 0 22 0 0 0 chr12 31675129 31675151 -112607338 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr12 31675151 31675172 -112607317 + (G)n Simple_repeat Simple_repeat 1 21 0 270 0 0 0 chr12 31675184 31675214 -112607275 + (T)n Simple_repeat Simple_repeat 1 30 0 28 33 0 0 chr12 31675223 31675253 -112607236 + GC_rich Low_complexity Low_complexity 1 30 0 24 39 0 0 chr12 31675276 31675302 -112607187 + AT_rich Low_complexity Low_complexity 1 26 0 245 62 0 0 chr12 31675332 31675364 -112607125 + (G)n Simple_repeat Simple_repeat 1 32 0 4809 111 36 30 chr12 31675584 31675851 -112606638 - L1M1 LINE L1 -5128 2437 2173 2620 137 41 12 chr12 31675851 31676267 -112606222 - MSTA LTR MaLR 0 428 1 4809 111 36 30 chr12 31676267 31676657 -112605832 - L1M1 LINE L1 -5392 2173 1772 330 87 0 0 chr12 31676657 31676703 -112605786 + (TG)n Simple_repeat Simple_repeat 2 47 0 4809 111 36 30 chr12 31676703 31676811 -112605678 - L1M1 LINE L1 -5793 1772 1666 1290 123 0 0 chr12 31677009 31677188 -112605301 - AluSg/x SINE Alu -1 309 131 1834 94 0 80 chr12 31677667 31677955 -112604534 + AluSx SINE Alu 36 300 -12 464 242 96 35 chr12 31678731 31678929 -112603560 + MER2 DNA MER2_type 136 345 0 367 327 103 49 chr12 31679270 31679619 -112602870 + L2 LINE L2 2338 2705 -609 239 290 29 82 chr12 31679975 31680182 -112602307 + L2 LINE L2 3117 3312 -1 1211 152 5 33 chr12 31680633 31680843 -112601646 - AluJo SINE Alu -108 204 1 1682 136 31 8 chr12 31681023 31681281 -112601208 + L1PA16 LINE L1 5901 6164 -2 414 236 60 51 chr12 31681488 31681763 -112600726 - L1MC5 LINE L1 -463 7498 7261 324 248 51 29 chr12 31681766 31681903 -112600586 - L1M4 LINE L1 -914 5232 5093 1854 162 0 10 chr12 31681930 31682226 -112600263 + AluJb SINE Alu 1 293 -19 21 104 0 0 chr12 31682260 31682337 -112600152 + AT_rich Low_complexity Low_complexity 1 77 0 2048 121 21 0 chr12 31682346 31682627 -112599862 - AluSx SINE Alu -25 287 1 1095 151 0 49 chr12 31683301 31683486 -112599003 - AluJb SINE Alu -24 288 113 1660 174 3 7 chr12 31683555 31683837 -112598652 - AluJb SINE Alu -27 285 5 2373 104 31 6 chr12 31683854 31684209 -112598280 - L1MA2 LINE L1 0 6304 5941 1837 164 0 13 chr12 31684209 31684513 -112597976 - AluSx SINE Alu -12 300 1 24 0 0 0 chr12 31684674 31684698 -112597791 + AT_rich Low_complexity Low_complexity 1 24 0 368 264 22 0 chr12 31687232 31687323 -112595166 - MIR SINE MIR -169 93 1 772 98 46 23 chr12 31687340 31687513 -112594976 + CT-rich Low_complexity Low_complexity 2 178 0 1572 140 15 143 chr12 31687527 31687752 -112594737 - AluJo SINE Alu -3 299 131 2476 87 0 0 chr12 31687752 31688063 -112594426 - AluY SINE Alu 0 311 1 1572 140 15 143 chr12 31688063 31688179 -112594310 - AluJo SINE Alu -171 131 2 629 237 98 48 chr12 31688496 31688743 -112593746 + MLT1H1 LTR MaLR 42 281 -261 762 145 72 51 chr12 31689241 31689379 -112593110 - FLAM_C SINE Alu -1 142 2 2034 139 3 7 chr12 31689557 31689859 -112592630 - AluSx SINE Alu -11 301 1 42 57 0 0 chr12 31689868 31689921 -112592568 + AT_rich Low_complexity Low_complexity 1 53 0 683 208 81 0 chr12 31689921 31690094 -112592395 - AluY SINE Alu -17 294 108 799 167 97 14 chr12 31691530 31691674 -112590815 - FRAM SINE Alu -10 156 1 207 0 0 0 chr12 31691753 31691776 -112590713 + (T)n Simple_repeat Simple_repeat 1 23 0 1583 131 0 13 chr12 31691984 31692213 -112590276 + AluJb SINE Alu 76 301 -11 313 275 67 34 chr12 31692233 31692255 -112590234 - HAL1b LINE L1 -2 1346 1325 469 283 80 74 chr12 31692255 31692768 -112589721 - L1ME4a LINE L1 -34 6087 1193 456 114 0 102 chr12 31692906 31692994 -112589495 - FLAM_C SINE Alu -2 141 63 263 150 0 0 chr12 31693087 31693127 -112589362 + AluSx SINE Alu 2 41 -262 241 328 0 0 chr12 31694039 31694097 -112588392 + Tigger3(Golem) DNA MER2_type 1 58 -2971 764 144 23 45 chr12 31694099 31694231 -112588258 + Tigger3(Golem) DNA MER2_type 2887 3015 -14 207 161 0 0 chr12 31694231 31694262 -112588227 + polypyrimidine Low_complexity Low_complexity 2 32 0 278 378 27 18 chr12 31694263 31694374 -112588115 - L2 LINE L2 -25 3247 3136 437 322 147 35 chr12 31694541 31695193 -112587296 - L2 LINE L2 -1 3312 2291 1820 168 3 3 chr12 31695286 31695583 -112586906 + AluJb SINE Alu 1 297 -15 1569 136 21 4 chr12 31696170 31696413 -112586076 + AluSx SINE Alu 43 289 -23 237 117 50 17 chr12 31696475 31696535 -112585954 + GA-rich Low_complexity Low_complexity 4 65 0 1570 174 45 17 chr12 31697390 31697678 -112584811 + AluJo SINE Alu 1 296 -16 2566 52 0 3 chr12 31698295 31698600 -112583889 - AluY SINE Alu -7 304 1 2166 169 22 14 chr12 31700737 31701099 -112581390 + MLT1A1 LTR MaLR 1 365 0 1378 222 67 0 chr12 31701234 31701351 -112581138 + AluJb SINE Alu 1 109 -203 282 29 0 0 chr12 31701351 31701386 -112581103 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 1378 222 67 0 chr12 31701386 31701552 -112580937 + AluJb SINE Alu 109 303 -9 1244 122 0 0 chr12 31701578 31701750 -112580739 + AluSg/x SINE Alu 138 309 -1 944 181 6 17 chr12 31702027 31702204 -112580285 - FRAM SINE Alu -5 171 1 264 179 128 39 chr12 31702281 31702359 -112580130 + L2 LINE L2 3229 3313 0 1055 164 0 0 chr12 31702674 31702839 -112579650 - FRAM SINE Alu -2 174 10 324 339 0 16 chr12 31702839 31702966 -112579523 - L2 LINE L2 -567 2747 2623 710 79 0 0 chr12 31702966 31703055 -112579434 - AluSg/x SINE Alu -10 299 211 1088 163 0 0 chr12 31703179 31703345 -112579144 - AluJb SINE Alu -14 298 133 586 154 10 19 chr12 31703376 31703480 -112579009 - MER65A LTR ERV1 0 445 343 299 213 53 75 chr12 31703548 31703642 -112578847 - AluSg/x SINE Alu -81 221 130 1104 201 18 14 chr12 31704517 31704736 -112577753 + AluJo SINE Alu 1 220 -92 349 56 19 74 chr12 31704737 31704791 -112577698 + AluSg/x SINE Alu 85 131 -169 2239 92 10 7 chr12 31704832 31705136 -112577353 + AluSc SINE Alu 1 305 -4 184 331 71 55 chr12 31705241 31705368 -112577121 + L2 LINE L2 3139 3267 -5 2161 110 16 13 chr12 31705460 31705770 -112576719 + AluSx SINE Alu 1 311 -1 2391 92 0 3 chr12 31705822 31706128 -112576361 + AluSx SINE Alu 1 305 -7 1214 106 6 0 chr12 31706589 31706749 -112575740 - AluSq SINE Alu -18 295 135 2084 132 7 7 chr12 31707020 31707324 -112575165 + AluSx SINE Alu 1 304 -8 373 227 114 0 chr12 31707324 31707412 -112575077 - LTR54 LTR ERV1 -38 472 375 1452 117 5 19 chr12 31707620 31707833 -112574656 - AluSx SINE Alu -102 210 1 326 234 211 0 chr12 31708284 31708412 -112574077 - MIR SINE MIR -76 186 32 2091 130 7 7 chr12 31709062 31709369 -112573120 - AluSx SINE Alu -5 307 1 1023 104 0 0 chr12 31709370 31709504 -112572985 - AluSq/x SINE Alu -179 134 1 206 303 131 20 chr12 31709663 31709762 -112572727 - MIR3 SINE MIR -95 113 4 689 205 0 8 chr12 31710366 31710493 -112571996 + AluJo SINE Alu 85 210 -102 2476 232 94 49 chr12 31711253 31712190 -112570299 + L2 LINE L2 2111 3088 -225 787 211 0 0 chr12 31712603 31712736 -112569753 + FLAM_A SINE Alu 1 133 0 272 193 70 0 chr12 31712972 31713029 -112569460 - L2 LINE L2 -4 3268 3208 281 236 11 45 chr12 31713173 31713262 -112569227 - L2 LINE L2 -2 3311 3226 19031 31 3 3 chr12 31713614 31715898 -112566591 - L1P LINE L1 -1534 4612 2328 2036 136 0 7 chr12 31716068 31716369 -112566120 - AluSg1 SINE Alu -10 299 1 2572 55 0 7 chr12 31716439 31716746 -112565743 - AluY SINE Alu -6 305 1 2118 131 3 0 chr12 31717366 31717672 -112564817 + AluSg SINE Alu 1 307 -3 2229 114 0 3 chr12 31717674 31717972 -112564517 + AluSx SINE Alu 1 297 -15 548 192 186 21 chr12 31717980 31718250 -112564239 + MLT1G LTR MaLR 1 306 -284 234 295 39 0 chr12 31718349 31718427 -112564062 + MLT1G LTR MaLR 411 491 -58 1451 211 11 4 chr12 31718429 31718694 -112563795 + Tigger4(Zombi) DNA MER2_type 2 268 -2463 239 128 0 0 chr12 31718696 31718735 -112563754 + Tigger4(Zombi) DNA MER2_type 2510 2548 -183 1732 146 19 41 chr12 31719901 31720217 -112562272 + AluSx SINE Alu 1 309 -3 1090 185 0 0 chr12 31720218 31720391 -112562098 + AluJb SINE Alu 134 306 -6 1920 121 0 27 chr12 31720394 31720692 -112561797 + AluSx SINE Alu 1 290 -22 244 138 0 35 chr12 31720703 31720761 -112561728 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 1735 148 10 61 chr12 31720829 31721139 -112561350 + AluJo SINE Alu 1 294 -18 2164 105 0 10 chr12 31721657 31721953 -112560536 + AluSc SINE Alu 1 293 -16 309 164 0 0 chr12 31721953 31722006 -112560483 + Charlie5 DNA MER1_type 2558 2613 -11 692 96 0 10 chr12 31722370 31722474 -112560015 - HSMAR1 DNA Mariner -1184 103 1 472 204 41 10 chr12 31722474 31722572 -112559917 + MER58B DNA MER1_type 241 341 0 382 281 116 0 chr12 31722572 31722691 -112559798 - MLT1G1 LTR MaLR -443 152 20 1203 222 102 177 chr12 31722695 31723110 -112559379 - L2 LINE L2 -313 3000 2551 834 181 0 0 chr12 31723110 31723243 -112559246 + FRAM SINE Alu 36 168 -8 1203 222 102 177 chr12 31723243 31723615 -112558874 - L2 LINE L2 -762 2551 2153 354 293 28 9 chr12 31723634 31723740 -112558749 - L2 LINE L2 -2767 547 440 607 275 144 45 chr12 31724007 31724533 -112557956 + L2 LINE L2 2711 3271 -1 318 318 9 9 chr12 31725207 31725314 -112557175 - MIR SINE MIR -69 139 33 351 270 212 61 chr12 31726509 31726938 -112555551 + L1M2 LINE L1 802 1295 -5554 28 29 0 0 chr12 31727088 31727123 -112555366 + GC_rich Low_complexity Low_complexity 1 35 0 601 275 48 39 chr12 31727396 31727625 -112554864 + L1MC4 LINE L1 7443 7673 -369 1419 208 145 28 chr12 31727633 31728060 -112554429 - MLT1D LTR MaLR 0 505 29 1136 260 92 52 chr12 31728060 31728449 -112554040 - L2 LINE L2 -701 2613 2204 2276 93 6 6 chr12 31728449 31728760 -112553729 + AluSq SINE Alu 1 311 -2 1136 260 92 52 chr12 31728760 31728793 -112553696 - L2 LINE L2 -1110 2204 2174 894 114 76 0 chr12 31729122 31729253 -112553236 + AluJb SINE Alu 1 141 -171 47 0 0 0 chr12 31729270 31729317 -112553172 + AT_rich Low_complexity Low_complexity 1 47 0 2409 102 5 18 chr12 31729604 31730128 -112552361 - L1PA10 LINE L1 0 6168 5570 7945 32 5 1 chr12 31730141 31731629 -112550860 - L1PA4 LINE L1 -3 6152 4662 1095 128 7 0 chr12 31731730 31731879 -112550610 - AluSq/x SINE Alu -163 150 1 35 24 0 0 chr12 31731888 31731930 -112550559 + AT_rich Low_complexity Low_complexity 1 42 0 2323 82 7 7 chr12 31731930 31732235 -112550254 - AluY SINE Alu -6 305 1 645 297 87 45 chr12 31732317 31732674 -112549815 - MLT1K LTR MaLR -18 570 199 1685 162 13 10 chr12 31733172 31733481 -112549008 - AluSx SINE Alu -2 310 1 24 0 0 0 chr12 31733528 31733552 -112548937 + AT_rich Low_complexity Low_complexity 1 24 0 1469 184 43 16 chr12 31733585 31733889 -112548600 + AluJb SINE Alu 1 312 0 958 263 4 23 chr12 31734388 31734647 -112547842 - AluJo SINE Alu -31 281 28 16296 44 8 4 chr12 31735045 31737025 -112545464 - L1P LINE L1 -4158 1988 1 1169 179 37 5 chr12 31737026 31737244 -112545245 - AluSg/x SINE Alu -14 296 72 2412 81 0 3 chr12 31738309 31738617 -112543872 - AluSg SINE Alu -3 307 1 22 56 0 0 chr12 31738857 31738893 -112543596 + AT_rich Low_complexity Low_complexity 1 36 0 787 185 15 0 chr12 31739539 31739669 -112542820 + FLAM_C SINE Alu 2 133 0 1653 180 17 0 chr12 31740328 31740617 -112541872 + AluJb SINE Alu 5 298 -14 526 226 0 0 chr12 31740711 31740813 -112541676 - U13 snRNA snRNA -2 102 1 2451 69 7 7 chr12 31740952 31741258 -112541231 + AluY SINE Alu 1 306 -5 631 200 9 0 chr12 31741480 31741590 -112540899 + MER41C LTR ERV1 331 441 -113 1821 171 3 3 chr12 31741590 31741895 -112540594 - AluSx SINE Alu -7 305 1 7482 102 5 19 chr12 31741895 31742265 -112540224 + HSMAR1 DNA Mariner 208 582 -705 1952 125 14 4 chr12 31742265 31742583 -112539906 + AluSx SINE Alu 1 321 0 7482 102 5 19 chr12 31742583 31743237 -112539252 + HSMAR1 DNA Mariner 582 1220 -67 271 208 0 56 chr12 31743556 31743628 -112538861 + MIR3 SINE MIR 133 200 -8 2395 80 7 0 chr12 31743967 31744268 -112538221 + AluSq SINE Alu 6 308 -5 290 296 19 105 chr12 31744839 31744915 -112537574 + MIR SINE MIR 73 129 -133 2261 97 0 7 chr12 31744915 31745213 -112537276 + AluSg SINE Alu 1 296 -14 290 296 19 105 chr12 31745213 31745298 -112537191 + MIR SINE MIR 129 220 -42 2191 107 3 3 chr12 31745298 31745596 -112536893 + AluSq SINE Alu 1 298 -15 2126 117 21 0 chr12 31745609 31745900 -112536589 + AluSg SINE Alu 1 297 -13 397 265 0 80 chr12 31745933 31746084 -112536405 + L1MC5 LINE L1 7751 7889 -72 22 0 0 0 chr12 31746692 31746714 -112535775 + GC_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr12 31746930 31746963 -112535526 + AT_rich Low_complexity Low_complexity 1 33 0 751 167 0 0 chr12 31746963 31747083 -112535406 - FLAM_C SINE Alu -22 121 2 297 0 0 0 chr12 31747199 31747232 -112535257 + (CA)n Simple_repeat Simple_repeat 2 34 0 1054 201 0 0 chr12 31747233 31747397 -112535092 - FAM SINE Alu -11 164 1 1699 178 0 23 chr12 31747408 31747711 -112534778 - AluJb SINE Alu -16 296 1 278 258 106 68 chr12 31747741 31747873 -112534616 - MIR SINE MIR -62 146 15 1242 183 62 5 chr12 31748222 31748446 -112534043 - AluJb SINE Alu -75 237 1 381 164 16 0 chr12 31748477 31748538 -112533951 - MLT1F LTR MaLR -480 62 1 1716 147 3 7 chr12 31748683 31749018 -112533471 + AluJb SINE Alu 1 334 0 330 224 13 13 chr12 31749468 31749544 -112532945 - Tigger3(Golem) DNA MER2_type -78 2951 2876 1879 149 0 33 chr12 31749637 31749938 -112532551 + AluJo SINE Alu 7 297 -15 2951 152 173 111 chr12 31749938 31750351 -112532138 + L1MC3 LINE L1 6657 7043 -742 231 319 0 32 chr12 31750351 31750445 -112532044 + MLT1F1 LTR MaLR 35 125 -442 2951 152 173 111 chr12 31750445 31750985 -112531504 + L1MC3 LINE L1 7043 7768 -17 590 113 10 0 chr12 31751483 31751580 -112530909 + (TCTA)n Simple_repeat Simple_repeat 2 99 0 315 0 0 0 chr12 31751580 31751615 -112530874 + (CCTA)n Simple_repeat Simple_repeat 1 35 0 653 228 0 0 chr12 31751615 31751729 -112530760 - FLAM_A SINE Alu -23 119 6 4549 103 44 8 chr12 31751770 31752382 -112530107 + MER51A LTR ERV1 1 634 0 240 321 18 55 chr12 31752596 31752705 -112529784 + MIR SINE MIR 25 129 -79 830 261 22 35 chr12 31752888 31752911 -112529578 + MER58A DNA MER1_type 1 23 -2397 1397 216 18 85 chr12 31752911 31753300 -112529189 + MLT1A1 LTR MaLR 1 363 -2 830 261 22 35 chr12 31753300 31753502 -112528987 + MER58A DNA MER1_type 23 223 -1 220 364 30 10 chr12 31753562 31753661 -112528828 + L2 LINE L2 2995 3095 -218 1875 149 6 16 chr12 31754251 31754566 -112527923 + AluSx SINE Alu 1 312 0 459 287 83 33 chr12 31754852 31755033 -112527456 - MIR SINE MIR -72 190 1 1001 167 11 17 chr12 31757038 31757212 -112525277 + FAM SINE Alu 1 173 -2 855 219 56 7 chr12 31757212 31757482 -112525007 + AluJb SINE Alu 7 289 -23 276 132 208 0 chr12 31757514 31757620 -112524869 + FLAM_C SINE Alu 1 128 -5 1681 160 28 25 chr12 31758113 31758395 -112524094 - AluJb SINE Alu -29 283 1 2012 153 0 6 chr12 31758424 31758738 -112523751 + AluSx SINE Alu 1 312 0 31 0 0 0 chr12 31759229 31759260 -112523229 + AT_rich Low_complexity Low_complexity 1 31 0 298 193 11 11 chr12 31759417 31759505 -112522984 + CT-rich Low_complexity Low_complexity 3 90 0 229 230 176 54 chr12 31759976 31760050 -112522439 + L2 LINE L2 3190 3272 0 22 56 0 0 chr12 31760159 31760195 -112522294 + AT_rich Low_complexity Low_complexity 1 36 0 2242 87 28 0 chr12 31760212 31760499 -112521990 - AluSg SINE Alu -10 300 6 1560 179 0 58 chr12 31760513 31760821 -112521668 - AluJo SINE Alu -22 290 1 481 114 130 23 chr12 31761048 31761179 -112521310 - L1MC3 LINE L1 0 7785 7641 253 279 25 13 chr12 31761303 31761382 -112521107 - L2 LINE L2 -670 2644 2565 802 159 0 36 chr12 31761689 31761827 -112520662 + FLAM_A SINE Alu 1 133 0 575 211 163 13 chr12 31762047 31762227 -112520262 + MER33 DNA MER1_type 1 195 -80 263 238 41 25 chr12 31762315 31762437 -112520052 + AluYb8 SINE Alu 18 141 -167 281 236 11 45 chr12 31762708 31762797 -112519692 + L2 LINE L2 3226 3311 -2 365 215 92 33 chr12 31762859 31763105 -112519384 + MLT1G LTR MaLR 28 306 -284 1841 130 0 0 chr12 31763143 31763397 -112519092 + AluSx SINE Alu 41 294 -18 717 151 124 0 chr12 31763498 31763683 -112518806 - THE1B LTR MaLR -1 363 156 2471 197 84 14 chr12 31863909 31865135 -112417354 - L1PBa LINE L1 -5069 1794 303 2372 102 0 0 chr12 31865135 31865438 -112417051 - AluSg SINE Alu -7 303 1 2471 197 84 14 chr12 31865438 31865643 -112416846 - L1PBa LINE L1 -6560 303 114 21 0 0 0 chr12 31865703 31865724 -112416765 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr12 31865784 31865819 -112416670 + AT_rich Low_complexity Low_complexity 1 35 0 248 324 29 19 chr12 31866680 31866785 -112415704 + MIR SINE MIR 37 142 -66 2283 151 50 24 chr12 31868519 31868942 -112413547 + Tigger2a DNA MER2_type 1 434 0 390 91 0 0 chr12 31869216 31869271 -112413218 + (CA)n Simple_repeat Simple_repeat 1 55 0 251 97 48 16 chr12 31869365 31869427 -112413062 + (TA)n Simple_repeat Simple_repeat 1 64 0 246 189 18 117 chr12 31870164 31870275 -112412214 - L2 LINE L2 -77 3236 3137 187 369 39 39 chr12 31871638 31871741 -112410748 + L2 LINE L2 3137 3239 -33 202 189 19 19 chr12 31872084 31872137 -112410352 + (TA)n Simple_repeat Simple_repeat 1 53 0 990 238 30 5 chr12 31872229 31872475 -112410014 - MIR SINE MIR 0 262 14 395 325 57 64 chr12 31872594 31872859 -112409630 + L3 LINE CR1 1216 1478 -99 2025 126 0 68 chr12 31872924 31873250 -112409239 - AluSx SINE Alu -7 305 2 4642 153 24 51 chr12 31873320 31873374 -112409115 + L1MB3 LINE L1 5056 5110 -1073 6303 89 8 2 chr12 31873374 31874346 -112408143 + L1PA13 LINE L1 5168 6146 -17 4642 153 24 51 chr12 31874346 31875450 -112407039 + L1MB3 LINE L1 5110 6182 -1 1906 180 0 0 chr12 31876043 31876337 -112406152 - AluJb SINE Alu -18 294 1 898 201 100 80 chr12 31876818 31877167 -112405322 + MER76 LTR ERV 331 686 -2 10298 174 96 15 chr12 31877191 31879861 -112402628 + L1M4c LINE L1 19 2909 -3473 2573 176 16 26 chr12 31879862 31880470 -112402019 + pTR5 LTR ERV1 743 1344 -1094 4264 123 15 126 chr12 31880486 31881408 -112401081 + LTR12 LTR ERV1 5 824 -2 636 266 76 11 chr12 31881412 31881687 -112400802 + L1M4c LINE L1 2914 3206 -3176 315 169 56 14 chr12 31881905 31881976 -112400513 + L1M4c LINE L1 3207 3280 -3102 * 1762 223 14 7 chr12 31881969 31882396 -112400093 + L1M4c LINE L1 3525 3954 -2428 433 115 44 133 chr12 31882808 31882921 -112399568 - MER53 DNA DNA -82 107 5 1630 233 45 31 chr12 31883751 31884240 -112398249 + L2 LINE L2 1557 2052 -1262 499 252 85 94 chr12 31884269 31884741 -112397748 - MLT1H LTR MaLR -19 530 1 655 176 17 25 chr12 31884800 31884919 -112397570 - FLAM_A SINE Alu -12 121 4 2565 261 101 18 chr12 31884931 31885990 -112396499 + L2 LINE L2 2074 3220 -93 331 277 75 75 chr12 31886085 31886367 -112396122 - MLT1J LTR MaLR 0 511 230 1934 126 3 11 chr12 31886661 31886947 -112395542 + AluSq SINE Alu 1 284 -29 984 219 44 133 chr12 31887346 31887866 -112394623 + L1MC4 LINE L1 7138 7611 -431 1247 199 25 21 chr12 31887866 31888107 -112394382 + Charlie1a DNA MER1_type 1 242 -1213 1662 157 44 7 chr12 31888127 31888421 -112394068 - L1MA3 LINE L1 0 6305 6001 252 62 21 62 chr12 31888658 31888706 -112393783 + AluSc SINE Alu 254 299 0 744 240 20 0 chr12 31888714 31888864 -112393625 + MER58B DNA MER1_type 189 341 0 1640 172 35 14 chr12 31888941 31889231 -112393258 - AluJb SINE Alu -16 296 1 232 263 32 63 chr12 31891194 31891289 -112391200 + MIR SINE MIR 164 255 -7 3008 214 34 20 chr12 31891300 31891982 -112390507 - Charlie1 DNA MER1_type -473 2288 1598 354 259 62 0 chr12 31891953 31892034 -112390455 - Charlie1 DNA MER1_type -2664 97 12 * 997 105 20 0 chr12 31892035 31892187 -112390302 + L1MA2 LINE L1 5869 6023 -281 194 129 0 0 chr12 31892210 31892241 -112390248 + (C)n Simple_repeat Simple_repeat 1 31 0 1558 143 49 52 chr12 31892590 31892897 -112389592 - AluSx SINE Alu -6 306 1 2280 89 0 13 chr12 31892925 31893229 -112389260 + AluY SINE Alu 1 300 -11 2377 96 0 0 chr12 31893296 31893599 -112388890 + AluSq SINE Alu 1 303 -10 2254 103 13 0 chr12 31894338 31894638 -112387851 + AluSq SINE Alu 1 304 -9 209 326 11 43 chr12 31895252 31895306 -112387183 - MIR3 SINE MIR -2 206 155 604 233 85 28 chr12 31895306 31895482 -112387007 - MER5A DNA MER1_type 0 189 4 209 326 11 43 chr12 31895482 31895519 -112386970 - MIR3 SINE MIR -53 155 118 2980 128 7 30 chr12 31895519 31895955 -112386534 - MSTB LTR MaLR 0 426 1 2982 106 86 0 chr12 31895969 31896352 -112386137 + MLT2A2 LTR ERVL 1 424 -29 894 81 0 0 chr12 31896352 31896476 -112386013 + (TA)n Simple_repeat Simple_repeat 2 125 0 2982 106 86 0 chr12 31896476 31896509 -112385980 + MLT2A2 LTR ERVL 424 453 0 452 230 81 72 chr12 31896594 31896816 -112385673 + L2 LINE L2 2905 3128 -185 1004 226 149 29 chr12 31897018 31897327 -112385162 - L2 LINE L2 0 3313 3042 3000 191 2 6 chr12 31897327 31897815 -112384674 + MER66B LTR ERV1 1 486 0 1004 226 149 29 chr12 31897815 31898080 -112384409 - L2 LINE L2 -271 3042 2668 4559 167 29 14 chr12 31898163 31899027 -112383462 + L1MB4 LINE L1 5304 6180 0 252 188 0 0 chr12 31899071 31899119 -112383370 - L2 LINE L2 -5 3308 3261 190 277 36 48 chr12 31900278 31900361 -112382128 + MIR SINE MIR 28 109 -153 438 238 229 51 chr12 31900381 31900595 -112381894 + MIR SINE MIR 8 259 -3 2104 178 5 56 chr12 31900937 31901348 -112381141 + MLT1B LTR MaLR 1 390 0 184 302 50 126 chr12 31901422 31901614 -112380875 - L2 LINE L2 -4 3268 3116 2667 89 100 8 chr12 31901614 31902005 -112380484 + MSTA LTR MaLR 2 428 0 184 302 50 126 chr12 31902005 31902176 -112380313 - L2 LINE L2 -156 3116 2933 218 306 14 14 chr12 31902469 31902541 -112379948 - MIR SINE MIR -32 230 159 303 268 21 10 chr12 31902736 31902833 -112379656 - MLT1J1 LTR MaLR -295 151 54 294 361 56 0 chr12 31902888 31902996 -112379493 - MIR SINE MIR -147 115 2 2280 105 3 0 chr12 31903030 31903335 -112379154 + AluSp SINE Alu 1 306 -7 506 335 74 54 chr12 31903360 31903667 -112378822 - L2 LINE L2 -584 2730 2408 1817 154 30 13 chr12 31903667 31903972 -112378517 + AluJb SINE Alu 1 310 -2 506 335 74 54 chr12 31903972 31904180 -112378309 - L2 LINE L2 -906 2408 2205 237 261 127 61 chr12 31904184 31904349 -112378140 - L2 LINE L2 -1274 2040 1865 4481 164 28 19 chr12 31904443 31905222 -112377267 + MER21B LTR ERV1 1 786 -77 952 310 61 22 chr12 31905358 31905765 -112376724 - LTR16A LTR ERVL -10 440 18 714 264 62 0 chr12 31905780 31905973 -112376516 + MIR SINE MIR 43 247 -15 198 184 41 41 chr12 31905998 31906047 -112376442 - MIR3 SINE MIR -153 55 7 225 295 26 13 chr12 31906675 31906753 -112375736 + MIR SINE MIR 72 150 -112 45302 38 1 1 chr12 31907599 31913757 -112368732 + L1PA4 LINE L1 1 6152 -3 27 0 0 0 chr12 31913757 31913784 -112368705 + AT_rich Low_complexity Low_complexity 1 27 0 2305 158 29 75 chr12 31913861 31914342 -112368147 - MLT1C LTR MaLR -8 459 1 552 194 15 8 chr12 31914345 31914479 -112368010 + L1ME2 LINE L1 5067 5201 -945 2603 190 105 70 chr12 31914855 31915761 -112366728 + L1ME2 LINE L1 5188 6161 -3 2627 151 46 12 chr12 31916829 31917241 -112365248 - MSTA LTR MaLR 0 428 3 2783 88 11 0 chr12 31917627 31917978 -112364511 + THE1A LTR MaLR 1 355 0 717 180 90 66 chr12 31919484 31919728 -112362761 + L1M4c LINE L1 1279 1528 -4856 15904 157 13 18 chr12 31919731 31921714 -112360775 + L1PA16 LINE L1 2 1973 -4876 2344 122 0 0 chr12 31921714 31922026 -112360463 + AluSx SINE Alu 1 312 0 15904 157 13 18 chr12 31922026 31922618 -112359871 + L1PA16 LINE L1 1973 2566 -4283 2143 207 47 2 chr12 31922596 31923088 -112359401 + L1PA16 LINE L1 5378 5891 -958 * 8219 114 21 16 chr12 31923095 31924335 -112358154 + L1PA7 LINE L1 5 1250 -5211 20494 87 2 1 chr12 31924337 31927801 -112354688 + L1PA7 LINE L1 2966 6453 -16 3874 128 40 11 chr12 31927839 31928535 -112353954 + L1PA16 LINE L1 5875 6585 -284 6521 95 10 22 chr12 31928535 31929605 -112352884 + L1PA13 LINE L1 5100 6158 -5 2502 61 0 10 chr12 31929607 31929917 -112352572 + AluY SINE Alu 1 307 -4 309 296 60 25 chr12 31929926 31930116 -112352373 - L1ME LINE L1 -456 5714 5514 430 299 32 36 chr12 31930217 31930495 -112351994 + HAL1b LINE L1 661 937 -411 2282 110 0 0 chr12 31930631 31930930 -112351559 - AluSc SINE Alu -10 299 1 1093 172 0 0 chr12 31930965 31931139 -112351350 + AluJb SINE Alu 137 310 -2 356 216 0 0 chr12 31931152 31931240 -112351249 + GA-rich Low_complexity Low_complexity 3 90 0 1391 101 31 35 chr12 31931464 31931692 -112350797 + L1MA10 LINE L1 6101 6327 -7 380 351 56 38 chr12 31931695 31932088 -112350401 + L1M4 LINE L1 2235 2634 -3512 234 215 38 25 chr12 31932802 31932881 -112349608 + L1M4 LINE L1 1042 1121 -5421 936 196 0 6 chr12 31932898 31933056 -112349433 + FRAM SINE Alu 1 152 -24 5023 72 37 7 chr12 31933666 31934369 -112348120 - L1PA11 LINE L1 0 6174 5451 23 0 0 0 chr12 31935006 31935029 -112347460 + AT_rich Low_complexity Low_complexity 1 23 0 1826 45 0 18 chr12 31935933 31936153 -112346336 + AluY SINE Alu 86 301 -10 1880 146 3 13 chr12 31938047 31938348 -112344141 + AluSx SINE Alu 1 298 -14 1890 153 10 0 chr12 31938488 31938783 -112343706 + AluSx SINE Alu 1 298 -14 629 235 159 39 chr12 31938786 31939177 -112343312 + MLT1H LTR MaLR 79 527 -15 2422 74 7 0 chr12 31939620 31939929 -112342560 - AluY SINE Alu 0 311 1 769 287 116 37 chr12 31940736 31940899 -112341590 + MLT1H LTR MaLR 1 150 -399 2124 118 14 3 chr12 31940899 31941196 -112341293 + AluJb SINE Alu 1 300 -12 769 287 116 37 chr12 31941196 31941541 -112340948 + MLT1H LTR MaLR 150 549 0 1328 262 136 16 chr12 31941787 31942271 -112340218 - MLT1F LTR MaLR 0 542 1 443 255 43 35 chr12 31942337 31942478 -112340011 - LTR67 LTR ERVL -4 553 412 2055 191 30 74 chr12 31942857 31943385 -112339104 - MLT1D LTR MaLR 0 505 1 4654 226 79 15 chr12 31944074 31945860 -112336629 + L1M1 LINE L1 3026 4943 -2622 1373 211 4 7 chr12 31945977 31946247 -112336242 + AluJo SINE Alu 6 274 -38 2353 11 7 0 chr12 31946620 31946892 -112335597 + L1PA2 LINE L1 5881 6154 -1 412 220 66 0 chr12 31946960 31947051 -112335438 + Tigger3b DNA MER2_type 6 102 -1129 * 4666 100 144 13 chr12 31947050 31947872 -112334617 + Tigger3b DNA MER2_type 279 1207 -24 23 0 0 0 chr12 31949098 31949121 -112333368 + AT_rich Low_complexity Low_complexity 1 23 0 255 255 106 35 chr12 31952489 31952630 -112329859 + L1ME LINE L1 5673 5823 -298 25 51 0 0 chr12 31952643 31952682 -112329807 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr12 31953646 31953667 -112328822 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr12 31953694 31953726 -112328763 + AT_rich Low_complexity Low_complexity 1 32 0 3074 159 73 6 chr12 31954043 31954463 -112328026 + L1MA7 LINE L1 5620 6097 -194 225 0 0 0 chr12 31954463 31954488 -112328001 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3074 159 73 6 chr12 31954488 31954697 -112327792 + L1MA7 LINE L1 6097 6291 0 216 0 0 0 chr12 31955255 31955279 -112327210 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2350 58 0 17 chr12 31957921 31958214 -112324275 - AluY SINE Alu -23 288 1 29 0 0 0 chr12 31958510 31958539 -112323950 + AT_rich Low_complexity Low_complexity 1 29 0 1512 101 48 0 chr12 31959993 31960220 -112322269 + L1MA5A LINE L1 6038 6275 -22 493 261 188 23 chr12 31960365 31960710 -112321779 + L1MC4a LINE L1 5756 6157 -1651 435 103 0 0 chr12 31960733 31960801 -112321688 - Alu SINE Alu 0 311 244 311 254 121 118 chr12 31960809 31961155 -112321334 + L1MC4a LINE L1 6235 6581 -1227 2198 100 0 23 chr12 31961156 31961465 -112321024 + AluSq SINE Alu 1 302 -11 1037 199 5 0 chr12 31961488 31961684 -112320805 + L1PA16 LINE L1 5954 6150 -16 227 129 29 29 chr12 31961871 31961941 -112320548 + (TA)n Simple_repeat Simple_repeat 2 71 0 846 198 172 104 chr12 31961943 31962425 -112320064 + L1MC5 LINE L1 6671 7173 -788 256 119 24 24 chr12 31962490 31962532 -112319957 + AluSc SINE Alu 219 260 -39 249 183 33 17 chr12 31962533 31962593 -112319896 + L1MC5 LINE L1 7308 7368 -593 1608 170 26 42 chr12 31962711 31963061 -112319428 + MSTB2 LTR MaLR 1 282 -114 1440 206 10 21 chr12 31963337 31963628 -112318861 + AluJo SINE Alu 9 296 -16 545 174 181 7 chr12 31963727 31963865 -112318624 + L1MB8 LINE L1 791 952 -5907 2259 106 6 10 chr12 31963884 31964196 -112318293 - AluSx SINE Alu -1 311 1 6182 213 72 12 chr12 31964421 31964755 -112317734 + L1MB8 LINE L1 3952 4264 -2693 200 33 0 33 chr12 31964755 31964785 -112317704 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6182 213 72 12 chr12 31964785 31966301 -112316188 + L1MB8 LINE L1 4264 5914 -1043 1058 144 58 4 chr12 31966303 31966513 -112315976 + AluJb SINE Alu 1 305 -7 3555 159 139 11 chr12 31966513 31967459 -112315030 + L1MB8 LINE L1 5911 6984 -5 21 71 0 0 chr12 31967587 31967629 -112314860 + AT_rich Low_complexity Low_complexity 1 42 0 301 314 122 21 chr12 31968569 31968757 -112313732 - L1ME LINE L1 -282 5839 5633 22 35 0 0 chr12 31969104 31969133 -112313356 + AT_rich Low_complexity Low_complexity 1 29 0 468 293 64 6 chr12 31969137 31969294 -112313195 + HAL1 LINE L1 4 169 -2338 705 187 64 41 chr12 31969372 31969543 -112312946 + MIR SINE MIR 1 175 -87 498 224 153 90 chr12 31969659 31969882 -112312607 + MIR SINE MIR 26 262 0 187 298 133 46 chr12 31970127 31970278 -112312211 - MIR3 SINE MIR -22 186 23 23 33 0 0 chr12 31970730 31970760 -112311729 + AT_rich Low_complexity Low_complexity 1 30 0 571 233 19 92 chr12 31971407 31971613 -112310876 + L2 LINE L2 3119 3309 -4 23 68 0 0 chr12 31972232 31972276 -112310213 + AT_rich Low_complexity Low_complexity 1 44 0 3163 174 38 21 chr12 31972866 31973985 -112308504 + L1MA8 LINE L1 4767 5897 -394 1164 129 35 10 chr12 31974000 31974202 -112308287 - L1MC2 LINE L1 -181 6163 5957 898 131 172 9 chr12 31974224 31974632 -112307857 - L1MA8 LINE L1 0 6291 5756 272 217 72 0 chr12 31974643 31974712 -112307777 + Charlie7 DNA MER1_type 2539 2612 0 1698 179 3 3 chr12 31974940 31975225 -112307264 - AluJb SINE Alu -27 285 1 24 53 0 0 chr12 31975520 31975558 -112306931 + AT_rich Low_complexity Low_complexity 1 38 0 313 242 54 60 chr12 31975677 31975826 -112306663 + L1M4 LINE L1 4568 4715 -1431 551 249 77 72 chr12 31976194 31976776 -112305713 + L1ME4a LINE L1 5379 5982 -139 1004 155 0 0 chr12 31977043 31977211 -112305278 + L1PA12 LINE L1 5715 5882 -286 918 136 0 0 chr12 31977504 31977636 -112304853 - AluSg/x SINE Alu -17 293 162 2322 125 168 77 chr12 31977637 31978220 -112304269 + MER4-int LTR ERV1 47 682 -5916 203 268 134 24 chr12 31978357 31978439 -112304050 + L2 LINE L2 3150 3240 -32 24 77 0 0 chr12 31978486 31978538 -112303951 + AT_rich Low_complexity Low_complexity 1 52 0 485 205 162 52 chr12 31979114 31979441 -112303048 + HAL1 LINE L1 1081 1443 -1064 1468 162 156 3 chr12 31979504 31979806 -112302683 - MER7A DNA MER2_type 0 346 1 486 330 23 6 chr12 31980663 31980836 -112301653 - MIR3 SINE MIR -8 200 25 2166 98 14 3 chr12 31982313 31982608 -112299881 - AluSq SINE Alu -15 298 1 906 244 129 52 chr12 31984118 31984483 -112298006 - L2 LINE L2 -11 3302 2910 614 259 129 10 chr12 31984767 31984960 -112297529 - MIR SINE MIR -27 235 20 819 185 46 0 chr12 31985473 31985624 -112296865 + AluJo SINE Alu 48 205 -107 189 0 0 0 chr12 31985631 31985652 -112296837 + (GA)n Simple_repeat Simple_repeat 2 22 0 1265 182 112 15 chr12 31987081 31987350 -112295139 + AluJo SINE Alu 1 295 -17 286 279 0 0 chr12 31988816 31988884 -112293605 - L3 LINE CR1 -175 1402 1335 2517 45 0 7 chr12 31988963 31989272 -112293217 + AluY SINE Alu 1 307 -4 338 308 62 51 chr12 31989367 31989562 -112292927 + L1M4 LINE L1 4883 5079 -1067 24 77 0 0 chr12 31989600 31989652 -112292837 + AT_rich Low_complexity Low_complexity 1 52 0 2152 122 0 7 chr12 31990546 31990840 -112291649 + AluSx SINE Alu 1 292 -20 23 68 0 0 chr12 31990929 31990973 -112291516 + AT_rich Low_complexity Low_complexity 1 44 0 399 233 103 0 chr12 31992601 31992717 -112289772 + L1ME2 LINE L1 6027 6154 -10 2346 73 0 52 chr12 31993117 31993445 -112289044 + AluY SINE Alu 1 311 0 1189 193 134 30 chr12 31993528 31993797 -112288692 - AluJo SINE Alu -5 297 1 28 0 0 0 chr12 31993939 31993967 -112288522 + AT_rich Low_complexity Low_complexity 1 28 0 239 209 164 0 chr12 31994232 31994299 -112288190 + MER116 DNA Mariner 3 80 0 239 226 38 19 chr12 31994698 31994751 -112287738 - L2 LINE L2 -78 3235 3182 5609 134 110 29 chr12 31994760 31995426 -112287063 + Tigger3b DNA MER2_type 2 613 -2415 2094 90 38 3 chr12 31995426 31995715 -112286774 + AluSg SINE Alu 1 299 -11 5609 134 110 29 chr12 31995715 31996186 -112286303 + Tigger3b DNA MER2_type 613 1231 0 1947 146 3 0 chr12 31996416 31996710 -112285779 - AluSx SINE Alu -17 295 1 26 50 0 0 chr12 31997213 31997253 -112285236 + AT_rich Low_complexity Low_complexity 1 40 0 297 128 0 0 chr12 31997677 31997724 -112284765 + (TTC)n Simple_repeat Simple_repeat 3 49 0 253 186 0 0 chr12 31997967 31998010 -112284479 - MIR SINE MIR 0 262 220 27 0 0 0 chr12 31998268 31998295 -112284194 + AT_rich Low_complexity Low_complexity 1 27 0 452 282 7 0 chr12 31998990 31999132 -112283357 - MER103 DNA DNA -13 153 11 778 225 55 10 chr12 32001146 32001346 -112281143 - MER3 DNA MER1_type 0 209 1 2261 118 3 0 chr12 32002705 32003010 -112279479 - AluSx SINE Alu -6 306 1 261 0 0 0 chr12 32003072 32003101 -112279388 + (TG)n Simple_repeat Simple_repeat 2 30 0 1903 101 87 0 chr12 32003216 32003492 -112278997 + AluSx SINE Alu 3 302 -10 1922 133 7 3 chr12 32003930 32004215 -112278274 - AluJb SINE Alu -23 289 4 34 55 0 0 chr12 32004373 32004428 -112278061 + AT_rich Low_complexity Low_complexity 1 55 0 28 48 0 0 chr12 32004504 32004546 -112277943 + AT_rich Low_complexity Low_complexity 1 42 0 778 297 52 22 chr12 32006298 32006702 -112275787 + L1MC4a LINE L1 5495 5910 -1898 234 133 48 96 chr12 32007039 32007122 -112275367 + HAL1b LINE L1 925 1003 -345 411 227 210 42 chr12 32007161 32007402 -112275087 + HAL1b LINE L1 1064 6109 -12 468 304 150 6 chr12 32008316 32008569 -112273920 - L1MC/D LINE L1 -488 5633 5358 279 323 30 0 chr12 32008584 32008748 -112273741 - L1MC/D LINE L1 -814 5332 5164 186 235 270 17 chr12 32010307 32010422 -112272067 + L2 LINE L2 2899 3042 -271 323 203 0 68 chr12 32011448 32011522 -112270967 + 5S rRNA rRNA 1 69 -52 722 218 40 6 chr12 32012096 32012270 -112270219 - MER5A DNA MER1_type -9 180 1 207 286 98 74 chr12 32013870 32014073 -112268416 - L2 LINE L2 0 3313 3106 4321 127 59 7 chr12 32014082 32014828 -112267661 + LTR1 LTR ERV1 1 785 0 180 0 0 0 chr12 32016295 32016315 -112266174 + (CG)n Simple_repeat Simple_repeat 1 20 0 * 339 25 0 0 chr12 32016314 32016354 -112266135 + (TG)n Simple_repeat Simple_repeat 2 41 0 1486 185 38 4 chr12 32016391 32016656 -112265833 - AluJb SINE Alu -38 274 1 401 269 116 37 chr12 32016771 32016987 -112265502 + L2 LINE L2 2128 2360 -954 3912 154 47 7 chr12 32017059 32017788 -112264701 + L1MD1 LINE L1 5476 6233 -9 206 333 0 46 chr12 32018273 32018360 -112264129 + L2 LINE L2 3231 3313 0 283 313 158 42 chr12 32018361 32018645 -112263844 - L2 LINE L2 -701 2613 2297 2218 119 3 3 chr12 32019116 32019426 -112263063 + AluSx SINE Alu 1 310 -2 1194 199 26 22 chr12 32019471 32019702 -112262787 + MER8 DNA MER2_type 8 239 0 24 0 0 0 chr12 32019712 32019736 -112262753 + AT_rich Low_complexity Low_complexity 1 24 0 187 245 38 19 chr12 32020348 32020401 -112262088 + MIR SINE MIR 151 204 -58 1848 143 0 38 chr12 32020403 32020535 -112261954 + AluJb SINE Alu 1 137 -175 2137 117 10 3 chr12 32020535 32020835 -112261654 + AluSx SINE Alu 1 302 -10 1848 143 0 38 chr12 32020835 32021016 -112261473 + AluJb SINE Alu 137 302 -10 381 284 123 0 chr12 32021425 32021469 -112261020 - L1MC/D LINE L1 -2152 5656 5619 432 0 0 0 chr12 32021469 32021517 -112260972 + (TG)n Simple_repeat Simple_repeat 2 49 0 381 284 123 0 chr12 32021517 32021634 -112260855 - L1MC/D LINE L1 -2189 5619 5475 514 265 146 18 chr12 32022721 32022800 -112259689 + HAL1 LINE L1 941 1009 -1498 1781 154 82 3 chr12 32022800 32023119 -112259370 - MER2 DNA MER2_type 0 344 1 514 265 146 18 chr12 32023119 32023367 -112259122 + HAL1 LINE L1 1009 1310 -1197 1758 163 10 7 chr12 32023799 32024088 -112258401 - AluJb SINE Alu -21 291 2 2142 163 74 52 chr12 32025462 32025960 -112256529 + LTR22 LTR ERVK 1 509 0 2290 101 0 0 chr12 32026070 32026368 -112256121 - AluSx SINE Alu -14 298 1 502 258 76 77 chr12 32026475 32026726 -112255763 - MIR SINE MIR -12 250 3 222 284 63 32 chr12 32028228 32028323 -112254166 - MIR3 SINE MIR -23 185 88 31 58 0 0 chr12 32029640 32029692 -112252797 + AT_rich Low_complexity Low_complexity 1 52 0 391 329 30 39 chr12 32030060 32030291 -112252198 - MIR SINE MIR 0 262 34 2261 84 10 10 chr12 32030306 32030614 -112251875 - AluSq SINE Alu -5 308 1 357 292 92 0 chr12 32030963 32031093 -112251396 + MIR SINE MIR 2 143 -119 1594 209 3 7 chr12 32031749 32032055 -112250434 - AluJo SINE Alu -7 305 1 2216 143 23 3 chr12 32032883 32033267 -112249222 + L1MB3 LINE L1 5785 6176 -7 4505 151 44 5 chr12 32034350 32035174 -112247315 + L1MB4 LINE L1 5325 6180 0 276 294 110 25 chr12 32035389 32035552 -112246937 + L2 LINE L2 3095 3271 -42 2056 138 24 0 chr12 32037659 32037956 -112244533 - AluSx SINE Alu -8 304 1 888 254 37 14 chr12 32038576 32038793 -112243696 - MIR SINE MIR -15 247 26 184 333 116 0 chr12 32039865 32039934 -112242555 - MER5B DNA MER1_type -29 149 73 2068 114 3 23 chr12 32040191 32040498 -112241991 + AluSg1 SINE Alu 1 301 -8 1741 177 3 16 chr12 32042281 32042586 -112239903 + AluJo SINE Alu 1 301 -11 183 230 390 0 chr12 32042868 32042968 -112239521 - MIR SINE MIR -78 184 46 254 293 40 73 chr12 32043089 32043239 -112239250 + L2 LINE L2 3144 3288 -25 446 268 121 45 chr12 32043287 32043485 -112239004 - MIR SINE MIR -49 213 1 232 250 79 21 chr12 32043947 32044087 -112238402 - MER104 DNA Tc2 0 180 33 2221 116 0 3 chr12 32045845 32046155 -112236334 + AluY SINE Alu 1 309 -2 895 277 27 16 chr12 32047508 32047764 -112234725 - MIR SINE MIR 0 262 4 232 200 0 36 chr12 32049349 32049404 -112233085 + MIR SINE MIR 92 144 -64 1590 203 175 15 chr12 32049985 32050521 -112231968 - L1ME1 LINE L1 -9 6157 5536 354 100 0 0 chr12 32052422 32052482 -112230007 + (CA)n Simple_repeat Simple_repeat 2 61 0 30 0 0 0 chr12 32053313 32053343 -112229146 + AT_rich Low_complexity Low_complexity 1 30 0 2055 152 0 0 chr12 32053431 32053728 -112228761 + AluJb SINE Alu 1 297 -15 1670 192 38 0 chr12 32054579 32054866 -112227623 - AluJo SINE Alu -14 298 1 418 242 61 0 chr12 32054884 32054983 -112227506 + L2 LINE L2 3163 3267 -5 2501 63 0 0 chr12 32055166 32055469 -112227020 - AluY SINE Alu -8 303 1 314 319 0 0 chr12 32055920 32055992 -112226497 + MIR SINE MIR 34 105 -157 5793 109 12 10 chr12 32055995 32057139 -112225350 + L1PA13 LINE L1 5007 6152 -11 1200 68 0 0 chr12 32057158 32057306 -112225183 + AluY SINE Alu 153 300 -11 316 246 197 8 chr12 32057307 32057429 -112225060 + MIR SINE MIR 97 241 -21 763 234 6 0 chr12 32057688 32057859 -112224630 + FRAM SINE Alu 1 164 -12 1485 162 92 0 chr12 32059361 32059676 -112222813 + L1MB8 LINE L1 5629 5972 -212 311 264 39 23 chr12 32059690 32059819 -112222670 + L1MB8 LINE L1 6034 6164 -14 256 328 67 39 chr12 32059829 32060009 -112222480 + L1ME LINE L1 5476 5660 -504 329 310 190 43 chr12 32060555 32061203 -112221286 + L2 LINE L2 1360 2102 -1212 * 447 308 30 0 chr12 32061185 32061318 -112221171 + MIR SINE MIR 104 240 -22 760 333 90 58 chr12 32061341 32062432 -112220057 + L2 LINE L2 2105 3271 -1 24 53 0 0 chr12 32062892 32062930 -112219559 + AT_rich Low_complexity Low_complexity 1 38 0 363 254 90 8 chr12 32063112 32063234 -112219255 + L1M4 LINE L1 2876 3007 -3139 546 144 62 0 chr12 32063725 32063822 -112218667 + L1MC2 LINE L1 6004 6106 -238 860 145 53 26 chr12 32063822 32063974 -112218515 + FRAM SINE Alu 1 155 -21 786 163 0 44 chr12 32063986 32064146 -112218343 + L1MC1 LINE L1 6093 6245 -88 10594 117 40 10 chr12 32064148 32064968 -112217521 + Tigger1 DNA MER2_type 609 1403 -1015 2361 89 3 0 chr12 32064968 32065272 -112217217 + AluSp SINE Alu 1 305 -8 10594 117 40 10 chr12 32065272 32066207 -112216282 + Tigger1 DNA MER2_type 1403 2417 -1 1425 278 127 30 chr12 32066384 32067369 -112215120 - L2 LINE L2 -8 3305 2219 1154 178 4 61 chr12 32069018 32069249 -112213240 + MER20 DNA MER1_type 1 218 -1 2390 84 3 10 chr12 32069482 32069792 -112212697 - AluSq SINE Alu -3 310 3 485 270 106 108 chr12 32071962 32072815 -112209674 + L1M2 LINE L1 493 1246 -5603 1872 130 4 4 chr12 32073855 32074155 -112208334 + AluSx SINE Alu 6 305 0 400 294 116 27 chr12 32074691 32074837 -112207652 - L2 LINE L2 0 3272 3114 2249 118 0 3 chr12 32075278 32075584 -112206905 + AluSq SINE Alu 1 305 -8 640 224 21 68 chr12 32075984 32076176 -112206313 + MIR SINE MIR 3 185 -77 619 266 70 41 chr12 32076596 32076912 -112205577 + L1ME4a LINE L1 5602 5926 -195 2187 80 4 0 chr12 32077201 32077476 -112205013 + AluY SINE Alu 6 281 -30 246 95 0 0 chr12 32077478 32077520 -112204969 + (TTAA)n Simple_repeat Simple_repeat 1 42 0 4372 137 39 33 chr12 32077894 32078532 -112203957 + L1MB8 LINE L1 5088 5721 -457 2173 84 3 36 chr12 32078532 32078841 -112203648 + AluSg1 SINE Alu 1 299 -10 4372 137 39 33 chr12 32078841 32078986 -112203503 + L1MB8 LINE L1 5721 5864 -314 2016 135 0 14 chr12 32078986 32079306 -112203183 + AluSq SINE Alu 2 313 0 4372 137 39 33 chr12 32079306 32079571 -112202918 + L1MB8 LINE L1 5864 6143 -35 1387 191 50 47 chr12 32079571 32079754 -112202735 + MLT1C LTR MaLR 1 182 -285 2473 66 0 7 chr12 32079754 32080057 -112202432 + AluY SINE Alu 1 301 -10 1387 191 50 47 chr12 32080057 32080276 -112202213 + MLT1C LTR MaLR 182 404 -63 263 125 109 16 chr12 32080363 32080427 -112202062 + MLT1C LTR MaLR 398 467 0 961 253 15 11 chr12 32080591 32080856 -112201633 - MER74B LTR ERVL -164 458 193 255 163 41 0 chr12 32080918 32080967 -112201522 - MER74B LTR ERVL -569 53 3 866 268 80 21 chr12 32081480 32081594 -112200895 - L1MC4a LINE L1 -337 5784 5678 512 237 0 0 chr12 32081594 32081725 -112200764 + L1PB4 LINE L1 6026 6156 0 866 268 80 21 chr12 32081725 32081989 -112200500 - L1MC4a LINE L1 -443 5678 5493 313 246 0 0 chr12 32082208 32082273 -112200216 + LTR16C LTR ERVL 233 297 -194 426 255 128 0 chr12 32082963 32083104 -112199385 + MIR SINE MIR 104 262 0 351 315 19 9 chr12 32083598 32083706 -112198783 + MIR3 SINE MIR 8 116 -92 587 333 78 13 chr12 32083728 32084037 -112198452 + L2 LINE L2 2503 2831 -483 1562 217 116 9 chr12 32084054 32084545 -112197944 + MLT1E LTR MaLR 1 593 0 928 295 113 28 chr12 32084547 32084971 -112197518 + L2 LINE L2 2854 3313 0 391 240 146 21 chr12 32085826 32086018 -112196471 - HAL1b LINE L1 -652 696 481 562 180 135 18 chr12 32086253 32086364 -112196125 - FLAM_A SINE Alu -9 124 1 1970 280 78 60 chr12 32086387 32087394 -112195095 - HAL1 LINE L1 -1478 1029 4 190 346 19 0 chr12 32087436 32087488 -112195001 + L2 LINE L2 3128 3180 -92 853 224 6 0 chr12 32087587 32087761 -112194728 + FRAM SINE Alu 1 175 -1 577 155 21 10 chr12 32088349 32088446 -112194043 + MER4A LTR ERV1 1 98 -566 1799 132 2 97 chr12 32088446 32088819 -112193670 + MER4A LTR ERV1 261 664 0 16256 116 115 105 chr12 32088821 32090160 -112192329 + MER4A-int LTR ERV1 1 1325 -5273 1966 153 3 0 chr12 32090160 32090448 -112192041 - AluSx SINE Alu -23 289 1 16256 116 115 105 chr12 32090448 32091817 -112190672 + MER4A-int LTR ERV1 1325 2679 -3919 1993 139 35 0 chr12 32091817 32092105 -112190384 + AluSq SINE Alu 1 298 -15 16256 116 115 105 chr12 32092105 32093401 -112189088 + MER4A-int LTR ERV1 2679 3960 -2638 1290 119 0 11 chr12 32093401 32093586 -112188903 + AluSg/x SINE Alu 128 310 0 16256 116 115 105 chr12 32093586 32095624 -112186865 + MER4A-int LTR ERV1 3960 6596 -2 644 103 21 10 chr12 32095632 32095729 -112186760 + MER4A LTR ERV1 1 98 -566 1693 134 5 77 chr12 32095729 32096101 -112186388 + MER4A LTR ERV1 261 664 0 194 62 31 0 chr12 32096137 32096169 -112186320 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 3855 121 62 12 chr12 32096173 32096754 -112185735 - MER4B LTR ERV1 0 610 1 458 256 30 41 chr12 32098025 32098291 -112184198 - L1M4 LINE L1 -3597 2549 2287 3041 179 19 10 chr12 32098492 32099067 -112183422 + L1MB5 LINE L1 5587 6166 -8 2150 125 7 7 chr12 32099142 32099447 -112183042 - AluSx SINE Alu -7 305 1 1122 203 139 102 chr12 32099992 32100474 -112182015 - MLT1H LTR MaLR 0 549 1 719 242 89 5 chr12 32100850 32101040 -112181449 + MIR SINE MIR 5 210 -52 350 312 85 18 chr12 32101191 32101473 -112181016 - L1ME LINE L1 -337 5784 5484 2622 128 24 69 chr12 32101813 32102322 -112180167 + LTR19A LTR ERV1 1 486 0 492 273 9 0 chr12 32102863 32102973 -112179516 - MER5A DNA MER1_type -1 188 78 1151 163 25 153 chr12 32102973 32103717 -112178772 - MER4A LTR ERV1 0 695 1 466 182 0 0 chr12 32103719 32103796 -112178693 - MER5A DNA MER1_type -110 79 3 237 265 25 143 chr12 32103804 32103873 -112178616 + MER5B DNA MER1_type 4 79 -99 183 42 0 0 chr12 32103873 32103897 -112178592 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 237 265 25 143 chr12 32103897 32104023 -112178466 + MER5B DNA MER1_type 79 176 -2 2464 11 0 28 chr12 32104344 32104629 -112177860 + AluYa5 SINE Alu 35 311 0 23 0 0 0 chr12 32104630 32104653 -112177836 + AT_rich Low_complexity Low_complexity 1 23 0 209 310 17 0 chr12 32105651 32105709 -112176780 + L2 LINE L2 3205 3263 -9 1220 241 35 22 chr12 32105740 32106051 -112176438 - MER87 LTR ERV1 0 541 227 24 32 0 0 chr12 32106051 32106082 -112176407 + AT_rich Low_complexity Low_complexity 1 31 0 888 218 4 94 chr12 32106105 32106371 -112176118 - MER87 LTR ERV1 -299 242 1 193 243 122 0 chr12 32106480 32106554 -112175935 + L2 LINE L2 2231 2313 -1001 715 247 72 31 chr12 32106557 32106780 -112175709 + MIR SINE MIR 1 232 -30 1644 245 112 32 chr12 32106782 32106919 -112175570 + MLT1E LTR MaLR 1 126 -467 1934 188 142 55 chr12 32106919 32107139 -112175350 + MLT2B2 LTR ERVL 1 201 -314 2095 138 0 0 chr12 32107139 32107430 -112175059 + AluSx SINE Alu 1 291 -21 1934 188 142 55 chr12 32107430 32107635 -112174854 + MLT2B2 LTR ERVL 201 473 -42 327 49 0 0 chr12 32107635 32107676 -112174813 + (CA)n Simple_repeat Simple_repeat 2 42 0 1934 188 142 55 chr12 32107676 32107722 -112174767 + MLT2B2 LTR ERVL 473 514 -1 1644 245 112 32 chr12 32107722 32108118 -112174371 + MLT1E LTR MaLR 126 577 -16 247 238 20 40 chr12 32108169 32108270 -112174219 + L2 LINE L2 2383 2481 -833 4190 145 25 85 chr12 32108395 32109228 -112173261 - LTR39 LTR ERV1 0 783 1 205 344 21 21 chr12 32109231 32109324 -112173165 + L2 LINE L2 2798 2890 -424 625 260 0 8 chr12 32109326 32109453 -112173036 + LTR39 LTR ERV1 658 783 0 781 225 104 26 chr12 32109841 32110072 -112172417 - MIR SINE MIR -6 256 8 299 250 264 0 chr12 32110242 32110382 -112172107 + MIR SINE MIR 60 236 -26 214 203 17 17 chr12 32110818 32110877 -112171612 + (TTCA)n Simple_repeat Simple_repeat 4 62 0 275 300 95 16 chr12 32111048 32111175 -112171314 - MIR SINE MIR -61 147 11 2313 74 7 10 chr12 32111306 32111602 -112170887 + AluY SINE Alu 1 295 -16 2171 100 0 40 chr12 32111925 32112246 -112170243 - AluSq SINE Alu -1 312 5 27 0 0 0 chr12 32113805 32113832 -112168657 + GC_rich Low_complexity Low_complexity 1 27 0 2372 76 7 7 chr12 32114956 32115259 -112167230 - AluSq SINE Alu -10 303 1 1214 203 111 6 chr12 32115473 32115698 -112166791 - Charlie2 DNA MER1_type -615 2247 1978 812 211 0 0 chr12 32115698 32115831 -112166658 - FLAM_A SINE Alu 0 133 1 1214 203 111 6 chr12 32115831 32115920 -112166569 - Charlie2 DNA MER1_type -884 1978 1900 202 231 0 19 chr12 32115920 32115972 -112166517 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 522 206 131 111 chr12 32115991 32116243 -112166246 - Charlie2 DNA MER1_type -2454 328 72 1542 181 84 3 chr12 32116243 32116552 -112165937 - MER58B DNA MER1_type -6 335 2 335 239 14 0 chr12 32116555 32116626 -112165863 - Charlie2 DNA MER1_type -2702 80 9 656 204 0 102 chr12 32116636 32116697 -112165792 - MER5B DNA MER1_type -3 175 109 2198 108 7 3 chr12 32116697 32116992 -112165497 + AluSq SINE Alu 1 296 -17 656 204 0 102 chr12 32116992 32117106 -112165383 - MER5B DNA MER1_type -69 109 18 284 214 14 14 chr12 32117201 32117271 -112165218 - HsTC2 DNA Tc2 -1812 86 17 184 346 38 31 chr12 32117750 32117854 -112164635 + L2 LINE L2 3137 3244 -69 1145 222 82 71 chr12 32117854 32118246 -112164243 + MSTD LTR MaLR 1 396 0 184 346 38 31 chr12 32118246 32118300 -112164189 + L2 LINE L2 3244 3296 -17 1732 172 3 14 chr12 32118331 32118621 -112163868 - AluSx SINE Alu -25 287 1 505 262 247 42 chr12 32119210 32119542 -112162947 + MLT1H LTR MaLR 139 538 -11 2211 117 0 3 chr12 32119876 32120175 -112162314 - AluSx SINE Alu -14 298 1 25 31 0 0 chr12 32120768 32120800 -112161689 + AT_rich Low_complexity Low_complexity 1 32 0 2792 118 70 0 chr12 32120922 32121322 -112161167 - MSTA LTR MaLR 0 428 1 10038 158 29 24 chr12 32121322 32122966 -112159523 - MSTA-int LTR MaLR 0 1651 1 1030 124 158 6 chr12 32122966 32123143 -112159346 - MSTA LTR MaLR 0 428 225 537 139 0 0 chr12 32123212 32123284 -112159205 + AluY SINE Alu 11 82 -229 23 0 0 0 chr12 32123421 32123444 -112159045 + AT_rich Low_complexity Low_complexity 1 23 0 260 309 71 0 chr12 32123686 32123770 -112158719 - MIR3 SINE MIR -54 154 65 2524 64 3 3 chr12 32124221 32124532 -112157957 - AluY SINE Alu 0 311 1 7536 177 28 30 chr12 32124563 32125490 -112156999 + L1M3f LINE L1 10 938 -5390 1897 176 0 0 chr12 32125490 32125792 -112156697 - AluSx SINE Alu -10 302 1 7536 177 28 30 chr12 32125792 32127306 -112155183 + L1M3f LINE L1 938 2438 -3890 951 188 11 0 chr12 32127311 32127487 -112155002 + L1M3f LINE L1 2544 2721 -3607 2177 114 14 0 chr12 32127573 32127862 -112154627 - AluSx SINE Alu -19 293 1 22 0 0 0 chr12 32127884 32127906 -112154583 + AT_rich Low_complexity Low_complexity 1 22 0 3070 211 61 48 chr12 32127926 32128532 -112153957 + L1ME2 LINE L1 4638 5234 -930 819 155 0 0 chr12 32128532 32128694 -112153795 + FLAM_C SINE Alu 1 162 0 3070 211 61 48 chr12 32128694 32129344 -112153145 + L1ME2 LINE L1 5234 5874 -290 2649 181 26 63 chr12 32129344 32129919 -112152570 - MLT2B3 LTR ERVL 0 554 1 3070 211 61 48 chr12 32129919 32129997 -112152492 + L1ME2 LINE L1 5874 5949 -215 798 157 51 91 chr12 32129997 32130058 -112152431 - MER53 DNA DNA 0 189 127 1645 163 45 21 chr12 32130058 32130346 -112152143 - AluJo SINE Alu -17 295 1 798 157 51 91 chr12 32130346 32130406 -112152083 - MER53 DNA DNA -62 127 66 408 20 0 0 chr12 32130406 32130455 -112152034 + (CA)n Simple_repeat Simple_repeat 2 50 0 798 157 51 91 chr12 32130455 32130529 -112151960 - MER53 DNA DNA -123 66 1 3070 211 61 48 chr12 32130529 32130673 -112151816 + L1ME2 LINE L1 5949 6154 -10 286 246 86 104 chr12 32130705 32130925 -112151564 + L1MC4 LINE L1 7826 8041 -1 310 221 15 0 chr12 32131339 32131407 -112151082 - L1MC/D LINE L1 -2018 5790 5722 4267 246 107 26 chr12 32131426 32132400 -112150089 - L1MD2 LINE L1 -13 6346 5452 1826 181 0 3 chr12 32132400 32132698 -112149791 - AluJo SINE Alu -15 297 1 4267 246 107 26 chr12 32132698 32133593 -112148896 - L1MD2 LINE L1 -907 5452 4299 204 40 0 0 chr12 32133603 32133628 -112148861 + (TG)n Simple_repeat Simple_repeat 1 25 0 1741 170 7 7 chr12 32133882 32134171 -112148318 + AluJb SINE Alu 7 295 -17 1474 188 37 12 chr12 32134762 32135074 -112147415 + MER61B LTR ERV1 1 413 -12 243 61 0 0 chr12 32135902 32135935 -112146554 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 384 59 0 0 chr12 32136607 32136658 -112145831 + (GA)n Simple_repeat Simple_repeat 1 51 0 2224 111 0 0 chr12 32137720 32138026 -112144463 + AluSq SINE Alu 1 306 -7 282 29 0 0 chr12 32138268 32138303 -112144186 + (CA)n Simple_repeat Simple_repeat 2 36 0 558 158 26 92 chr12 32138310 32138462 -112144027 + LTR25 LTR ERV1 215 356 -438 986 166 28 4 chr12 32138635 32138858 -112143631 + LTR25 LTR ERV1 339 784 0 234 81 0 0 chr12 32139866 32139903 -112142586 + (A)n Simple_repeat Simple_repeat 1 37 0 204 179 0 0 chr12 32141136 32141175 -112141314 + (TG)n Simple_repeat Simple_repeat 1 39 0 526 285 81 23 chr12 32141670 32141891 -112140598 + L2 LINE L2 3079 3312 -1 1165 269 156 12 chr12 32141915 32142401 -112140088 - L3 LINE CR1 -10 1567 1012 263 192 39 0 chr12 32142408 32142460 -112140029 + MER5B DNA MER1_type 2 55 -123 252 204 19 0 chr12 32142478 32142532 -112139957 - MER5B DNA MER1_type -121 57 3 216 311 0 0 chr12 32142553 32142614 -112139875 - L3 LINE CR1 -579 998 938 214 298 188 16 chr12 32143501 32143623 -112138866 + MIR SINE MIR 21 160 -102 188 306 65 0 chr12 32143663 32143725 -112138764 + MIR SINE MIR 157 222 -40 560 138 0 55 chr12 32144157 32144266 -112138223 + L1PA12 LINE L1 6066 6168 0 572 263 81 8 chr12 32147803 32148039 -112134450 + MER112 DNA MER1_type 3 255 -1 405 0 0 0 chr12 32148268 32148313 -112134176 + (TG)n Simple_repeat Simple_repeat 1 45 0 198 0 0 0 chr12 32148312 32148334 -112134155 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 232 308 0 0 chr12 32148717 32148782 -112133707 + (CA)n Simple_repeat Simple_repeat 1 65 0 293 293 121 32 chr12 32148882 32149039 -112133450 + MIR SINE MIR 32 202 -60 2935 130 9 0 chr12 32149549 32149973 -112132516 - MSTA LTR MaLR 0 428 1 246 273 0 15 chr12 32150311 32150377 -112132112 - MIR SINE MIR -11 251 187 4319 146 94 13 chr12 32151097 32151859 -112130630 + LTR1B LTR ERV1 1 824 -2 258 310 46 76 chr12 32152314 32152436 -112130053 - MIR SINE MIR -63 145 40 2027 228 128 33 chr12 32152676 32153338 -112129151 + MER50 LTR ERV1 10 734 0 1943 167 167 49 chr12 32154663 32155153 -112127336 + LTR10A LTR ERV1 1 548 -61 1811 143 7 30 chr12 32155469 32155769 -112126720 + AluJo SINE Alu 1 293 -19 1151 171 36 52 chr12 32155891 32156142 -112126347 + AluJo SINE Alu 47 293 -19 336 246 29 76 chr12 32156470 32156641 -112125848 - L2 LINE L2 -213 3059 2897 1416 183 98 87 chr12 32158081 32158580 -112123909 - MER66A LTR ERV1 0 478 97 286 152 0 0 chr12 32159123 32159169 -112123320 - MIR SINE MIR -33 229 184 951 317 57 29 chr12 32160731 32161254 -112121235 - L2 LINE L2 -355 2959 2422 3224 165 53 23 chr12 32161266 32161885 -112120604 + LTR9B LTR ERV1 7 644 0 320 184 92 101 chr12 32161885 32161994 -112120495 + HUERS-P3 LTR ERV1 1 108 -7310 * 8425 166 37 26 chr12 32161986 32162318 -112120171 + HUERS-P3 LTR ERV1 411 738 -7860 2345 77 3 0 chr12 32162318 32162629 -112119860 + AluSp SINE Alu 1 312 -1 8425 166 37 26 chr12 32162629 32164838 -112117651 + HUERS-P3 LTR ERV1 738 3284 -5314 822 194 43 0 chr12 32164831 32164970 -112117519 + HUERS-P3 LTR ERV1 4539 4683 -4236 * 2964 157 4 7 chr12 32164970 32165458 -112117031 + HUERS-P3 LTR ERV1 4889 5404 -1699 * 3979 175 4 26 chr12 32165442 32165685 -112116804 + HUERS-P3 LTR ERV1 6250 6497 -2422 2079 61 10 17 chr12 32165685 32166021 -112116468 - AluY SINE Alu 0 311 1 3979 175 4 26 chr12 32166021 32166464 -112116025 + HUERS-P3 LTR ERV1 6497 6921 -1998 455 215 0 0 chr12 32166471 32166564 -112115925 + HUERS-P3 LTR ERV1 6882 6974 -1945 696 190 45 8 chr12 32166566 32166757 -112115732 + HUERS-P3 LTR ERV1 2383 4329 -551 1356 185 0 22 chr12 32167016 32167124 -112115365 + HUERS-P3 LTR ERV1 7158 7267 -1652 4630 45 35 0 chr12 32167124 32167695 -112114794 - LTR10C LTR ERV1 0 591 1 1356 185 0 22 chr12 32167695 32167862 -112114627 + HUERS-P3 LTR ERV1 7267 8919 0 3128 143 87 38 chr12 32167862 32167954 -112114535 + LTR9B LTR ERV1 7 93 -551 2043 110 7 20 chr12 32167954 32168255 -112114234 - AluSx SINE Alu -15 297 1 3128 143 87 38 chr12 32168255 32168537 -112113952 + LTR9B LTR ERV1 93 360 -284 6373 114 23 22 chr12 32168537 32169490 -112112999 + LTR13 LTR ERVK 1 954 0 3128 143 87 38 chr12 32169490 32169722 -112112767 + LTR9B LTR ERV1 360 644 0 248 200 139 26 chr12 32170618 32170733 -112111756 - Charlie7 DNA MER1_type -14 2598 2471 364 175 21 21 chr12 32170733 32170830 -112111659 + (CATATA)n Simple_repeat Simple_repeat 5 101 0 495 204 76 140 chr12 32171729 32172136 -112110353 - Charlie7 DNA MER1_type -75 2537 2157 1892 99 0 51 chr12 32172176 32172468 -112110021 + AluSx SINE Alu 14 290 -22 30 0 0 0 chr12 32172468 32172498 -112109991 + AT_rich Low_complexity Low_complexity 1 30 0 1125 268 80 11 chr12 32172521 32172682 -112109807 - Charlie7 DNA MER1_type -2045 567 419 581 106 0 0 chr12 32172682 32172767 -112109722 - L1PA10 LINE L1 -8 6160 6076 1125 268 80 11 chr12 32172767 32172978 -112109511 - Charlie7 DNA MER1_type -2193 419 169 324 308 82 27 chr12 32173079 32173225 -112109264 - MIR3 SINE MIR -52 156 3 1772 149 0 29 chr12 32173633 32173941 -112108548 + AluSx SINE Alu 1 299 -13 7541 32 1 8 chr12 32174279 32175369 -112107120 + L1PA4 LINE L1 5087 6171 0 1190 157 0 5 chr12 32175715 32175912 -112106577 - L1PA15 LINE L1 0 6165 5970 24 32 0 0 chr12 32176010 32176041 -112106448 + AT_rich Low_complexity Low_complexity 1 31 0 329 325 95 43 chr12 32177211 32177442 -112105047 - MIR SINE MIR -17 245 3 408 289 62 99 chr12 32177468 32177741 -112104748 + L1MC4a LINE L1 5724 5986 -135 391 277 17 42 chr12 32177967 32178086 -112104403 - L2 LINE L2 0 3272 3157 2252 94 0 0 chr12 32178462 32178761 -112103728 + AluSg SINE Alu 1 299 -11 2245 160 6 3 chr12 32179057 32179419 -112103070 - MLT1A1 LTR MaLR -2 363 1 27 62 0 0 chr12 32179929 32179977 -112102512 + AT_rich Low_complexity Low_complexity 1 48 0 190 224 0 20 chr12 32180117 32180166 -112102323 + L2 LINE L2 3224 3271 -1 209 300 57 14 chr12 32181425 32181495 -112100994 - MIR SINE MIR -119 89 17 835 214 10 42 chr12 32182618 32182810 -112099679 + MIR SINE MIR 55 240 -22 396 307 70 14 chr12 32182841 32183056 -112099433 - L1ME LINE L1 -396 5774 5548 1061 237 70 106 chr12 32183106 32183200 -112099289 - LTR28 LTR ERV1 -131 505 409 2264 153 23 3 chr12 32183200 32183554 -112098935 - THE1B LTR MaLR -3 361 1 1061 237 70 106 chr12 32183554 32184001 -112098488 - LTR28 LTR ERV1 -227 409 1 337 335 43 32 chr12 32184001 32184186 -112098303 - L1ME LINE L1 -631 5543 5357 564 306 86 32 chr12 32184200 32184733 -112097756 - L1ME LINE L1 -842 5304 4743 370 294 129 42 chr12 32184786 32186370 -112096119 - L1ME LINE L1 -1488 4658 2786 213 39 0 0 chr12 32186476 32186502 -112095987 + (TTCTCC)n Simple_repeat Simple_repeat 6 31 0 1650 178 21 0 chr12 32186502 32186778 -112095711 - AluJb SINE Alu -27 285 1 1003 121 6 12 chr12 32187432 32187478 -112095011 + (GGAA)n Simple_repeat Simple_repeat 1 217 0 1003 121 6 12 chr12 32187478 32187651 -112094838 + (GGAA)n Simple_repeat Simple_repeat 2 173 0 198 343 0 15 chr12 32188145 32188212 -112094277 + L3 LINE CR1 722 787 -790 1578 158 24 0 chr12 32188927 32189180 -112093309 - AluJb SINE Alu -5 307 49 189 388 89 24 chr12 32189277 32189738 -112092751 + L2 LINE L2 2342 2832 -482 193 309 29 0 chr12 32189943 32190011 -112092478 + L2 LINE L2 3186 3255 -17 375 60 0 0 chr12 32190011 32190061 -112092428 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 454 300 84 16 chr12 32190271 32190461 -112092028 - MIR SINE MIR -56 206 4 241 159 0 0 chr12 32190754 32190798 -112091691 + L3 LINE CR1 1341 1384 -193 2091 128 7 0 chr12 32191091 32191388 -112091101 + AluSx SINE Alu 1 299 -13 272 98 0 0 chr12 32191988 32192029 -112090460 - MIR SINE MIR -64 144 104 409 156 10 73 chr12 32193785 32193881 -112088608 - MIR SINE MIR -100 162 73 220 231 46 46 chr12 32194796 32194861 -112087628 + MIR SINE MIR 38 102 -106 1058 222 9 4 chr12 32195917 32196147 -112086342 - MIR SINE MIR 0 262 32 2157 139 0 0 chr12 32196538 32196841 -112085648 + AluSx SINE Alu 1 303 -9 1982 149 3 3 chr12 32198154 32198449 -112084040 - AluSx SINE Alu -17 295 1 365 242 102 45 chr12 32198730 32198887 -112083602 + MIR3 SINE MIR 20 185 -23 4155 170 66 41 chr12 32198983 32199805 -112082684 + MER21B LTR ERV1 1 842 -21 447 268 43 0 chr12 32199901 32200039 -112082450 - L1ME4a LINE L1 -1 6120 5977 1249 122 76 5 chr12 32200046 32200243 -112082246 + MER2 DNA MER2_type 1 211 -134 917 228 0 0 chr12 32200282 32200444 -112082045 + Tigger3(Golem) DNA MER2_type 2 163 -2866 * 5313 121 32 16 chr12 32200438 32201291 -112081198 + Tigger3(Golem) DNA MER2_type 2163 3028 -1 1184 173 98 26 chr12 32201366 32201703 -112080786 - MSTC LTR MaLR 0 428 34 302 270 79 16 chr12 32201773 32201899 -112080590 + L1ME LINE L1 6 139 -5931 8083 210 21 21 chr12 32202887 32205084 -112077405 + L1M2a LINE L1 634 2842 -4326 860 253 58 35 chr12 32205090 32205438 -112077051 + L1M2a LINE L1 3283 3638 -3529 431 271 33 81 chr12 32205464 32205674 -112076815 + L1ME3A LINE L1 5911 6110 -60 30 69 0 0 chr12 32205812 32205870 -112076619 + AT_rich Low_complexity Low_complexity 1 58 0 274 248 79 0 chr12 32206013 32206114 -112076375 + L1MC4 LINE L1 7929 8037 -5 11450 60 9 1 chr12 32206251 32206918 -112075571 - L1PA6 LINE L1 0 6154 5494 2325 101 0 3 chr12 32206918 32207216 -112075273 - AluY SINE Alu -14 297 1 11450 60 9 1 chr12 32207216 32208781 -112073708 - L1PA6 LINE L1 -660 5494 3912 571 76 0 0 chr12 32208781 32208859 -112073630 - L1PA5 LINE L1 -1 6153 6075 27293 100 13 10 chr12 32208859 32212743 -112069746 - L1PA6 LINE L1 -2232 3914 22 189 343 59 46 chr12 32214529 32214768 -112067721 + L2 LINE L2 2736 2977 -337 266 304 161 9 chr12 32214952 32215064 -112067425 - L2 LINE L2 -18 3254 3126 1025 258 111 11 chr12 32215085 32215632 -112066857 + L2 LINE L2 2707 3313 0 406 289 20 27 chr12 32215837 32215986 -112066503 - L2 LINE L2 -4 3309 3162 480 289 30 0 chr12 32216046 32216181 -112066308 + MIR SINE MIR 9 147 -115 335 182 91 26 chr12 32216186 32216263 -112066226 + LTR8 LTR ERV1 1 82 -609 1498 200 74 99 chr12 32216323 32216826 -112065663 + LTR8A LTR ERV1 187 676 -51 2073 139 0 0 chr12 32216826 32217120 -112065369 - AluSx SINE Alu -18 294 1 1498 200 74 99 chr12 32217120 32217171 -112065318 + LTR8A LTR ERV1 676 727 0 181 219 62 0 chr12 32217175 32217239 -112065250 + MIR SINE MIR 153 220 -42 492 110 20 20 chr12 32218106 32218206 -112064283 + (TTTC)n Simple_repeat Simple_repeat 1 100 0 510 148 241 19 chr12 32218211 32218319 -112064170 - FLAM_C SINE Alu -1 132 1 245 244 105 12 chr12 32218322 32218408 -112064081 + L2 LINE L2 3178 3271 -1 336 304 27 0 chr12 32218579 32218691 -112063798 + MIR3 SINE MIR 53 167 -41 1954 139 81 23 chr12 32218753 32219097 -112063392 + THE1B LTR MaLR 1 364 0 198 0 0 0 chr12 32219376 32219398 -112063091 + (CA)n Simple_repeat Simple_repeat 1 22 0 646 260 20 30 chr12 32219522 32219722 -112062767 + MIR SINE MIR 3 200 -62 516 164 46 186 chr12 32219815 32220078 -112062411 + L1MC4 LINE L1 7554 7779 -263 441 0 0 0 chr12 32220951 32221000 -112061489 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 587 108 11 0 chr12 32221652 32221745 -112060744 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 1554 158 4 8 chr12 32222363 32222640 -112059849 + AluSx SINE Alu 30 305 0 562 256 30 6 chr12 32222716 32222880 -112059609 + MIR SINE MIR 92 259 -3 335 313 173 7 chr12 32223000 32223150 -112059339 + MER20B DNA MER1_type 1 175 -608 402 184 128 9 chr12 32223206 32223315 -112059174 + MLT1L LTR MaLR 167 288 -327 248 331 21 21 chr12 32223411 32223553 -112058936 + MLT1L LTR MaLR 466 607 -8 526 145 179 17 chr12 32223609 32223726 -112058763 - MLT1A1 LTR MaLR -228 137 2 4921 182 78 24 chr12 32223727 32223896 -112058593 + L1MD1 LINE L1 4444 4602 -1640 208 0 30 30 chr12 32223896 32223929 -112058560 + (TA)n Simple_repeat Simple_repeat 1 33 0 4921 182 78 24 chr12 32223929 32224422 -112058067 + L1MD1 LINE L1 4602 5067 -1175 2440 71 10 0 chr12 32224422 32224718 -112057771 + AluY SINE Alu 1 299 -12 4921 182 78 24 chr12 32224718 32225240 -112057249 + L1MD1 LINE L1 5067 5559 -683 1725 178 3 25 chr12 32225240 32225554 -112056935 + AluJo SINE Alu 3 309 -3 4921 182 78 24 chr12 32225554 32226079 -112056410 + L1MD1 LINE L1 5559 6242 0 441 92 40 13 chr12 32226855 32226931 -112055558 + LTR15 LTR ERV1 410 487 -6 292 231 67 58 chr12 32227864 32227968 -112054521 + MIR SINE MIR 79 183 -79 455 218 45 9 chr12 32227974 32228084 -112054405 - MLT1J LTR MaLR -7 504 391 564 231 14 0 chr12 32228100 32228243 -112054246 + MER104 DNA Tc2 6 150 -30 541 219 74 107 chr12 32228270 32228577 -112053912 - MLT1L LTR MaLR -149 466 99 240 313 0 16 chr12 32228649 32228713 -112053776 + L2 LINE L2 3185 3247 -25 420 37 0 0 chr12 32228737 32228791 -112053698 + (CA)n Simple_repeat Simple_repeat 2 55 0 239 329 109 7 chr12 32229134 32229271 -112053218 - MIR SINE MIR -78 184 34 441 260 118 39 chr12 32229908 32230162 -112052327 + L2 LINE L2 3030 3303 -10 755 186 0 0 chr12 32230364 32230482 -112052007 + FLAM_C SINE Alu 3 120 -23 198 0 0 0 chr12 32230482 32230504 -112051985 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 555 312 32 28 chr12 32230861 32231108 -112051381 + L2 LINE L2 2630 2877 -437 1777 146 69 39 chr12 32231217 32231581 -112050908 - THE1C LTR MaLR 0 375 1 539 287 75 32 chr12 32231603 32231885 -112050604 + L2 LINE L2 3020 3313 0 195 152 0 0 chr12 32232051 32232097 -112050392 + CT-rich Low_complexity Low_complexity 2 47 0 198 313 0 0 chr12 32232103 32232167 -112050322 + MIR3 SINE MIR 110 173 -35 233 296 176 0 chr12 32232768 32232876 -112049613 + MIR3 SINE MIR 67 193 -15 217 325 62 0 chr12 32233337 32233417 -112049072 - L2 LINE L2 -32 3240 3156 404 345 60 12 chr12 32233459 32233627 -112048862 - MER91A DNA MER1_type -5 191 16 319 363 28 32 chr12 32234118 32234366 -112048123 - L2 LINE L2 -194 3078 2832 719 280 0 0 chr12 32234581 32234738 -112047751 - MER45A DNA AcHobo -21 157 1 234 128 0 0 chr12 32234792 32234831 -112047658 + (GA)n Simple_repeat Simple_repeat 1 39 0 1224 148 16 146 chr12 32235985 32236123 -112046366 - MER33 DNA MER1_type -2261 324 170 1555 98 5 0 chr12 32236123 32236347 -112046142 - L1PA14 LINE L1 -1 6160 5936 1224 148 16 146 chr12 32236347 32236579 -112045910 - MER33 DNA MER1_type -2415 170 2 2309 106 3 0 chr12 32236698 32236999 -112045490 + AluSx SINE Alu 1 302 -10 317 250 68 34 chr12 32237038 32237214 -112045275 - L1M4 LINE L1 -3792 2354 2173 233 310 46 0 chr12 32237730 32237817 -112044672 + L1MC4 LINE L1 6615 6705 -1337 296 301 0 48 chr12 32237872 32237980 -112044509 + L1ME LINE L1 5636 5735 -386 2307 96 7 3 chr12 32237980 32238281 -112044208 + AluSx SINE Alu 1 302 -10 296 301 0 48 chr12 32238281 32238338 -112044151 + L1ME LINE L1 5735 5793 -328 207 0 0 0 chr12 32238806 32238829 -112043660 + (A)n Simple_repeat Simple_repeat 1 23 0 2624 68 0 0 chr12 32239691 32240000 -112042489 + AluY SINE Alu 1 309 -2 396 0 0 0 chr12 32240142 32240186 -112042303 + (TG)n Simple_repeat Simple_repeat 2 45 0 2273 147 40 19 chr12 32240602 32241025 -112041464 - MSTB1 LTR MaLR 0 432 1 625 178 31 31 chr12 32241537 32241666 -112040823 + MER3 DNA MER1_type 40 168 -41 * 1214 191 93 25 chr12 32241638 32242037 -112040452 + MER3 DNA MER1_type 2190 2615 0 832 266 46 19 chr12 32242461 32242720 -112039769 - LTR16A LTR ERVL -7 443 178 214 357 93 22 chr12 32242930 32243252 -112039237 + L2 LINE L2 2059 2403 -911 206 286 113 23 chr12 32246176 32246309 -112036180 + MIR3 SINE MIR 20 164 -44 * 385 248 248 31 chr12 32246307 32246561 -112035928 + L2 LINE L2 3005 3313 0 465 292 15 0 chr12 32248032 32248162 -112034327 + MIR SINE MIR 21 152 -110 2497 89 0 0 chr12 32249170 32249472 -112033017 + AluSx SINE Alu 1 302 -10 294 282 13 0 chr12 32249507 32249585 -112032904 + L2 LINE L2 3230 3308 -5 1791 163 31 31 chr12 32249642 32250029 -112032460 - MER45B DNA AcHobo 0 1040 654 253 197 33 0 chr12 32250809 32250870 -112031619 - MIR SINE MIR -127 135 73 268 213 33 0 chr12 32250912 32250973 -112031516 - MIR SINE MIR -127 135 73 795 61 0 0 chr12 32251956 32252055 -112030434 - THE1A LTR MaLR -1 354 256 1272 114 64 18 chr12 32252116 32252336 -112030153 - MER30 DNA MER1_type 0 230 1 304 279 82 16 chr12 32252371 32252493 -112029996 - MIR SINE MIR -105 157 28 2192 97 0 0 chr12 32252946 32253224 -112029265 - AluSq SINE Alu -3 310 33 275 255 59 118 chr12 32253858 32254011 -112028478 + L2 LINE L2 3127 3270 -2 714 241 129 65 chr12 32255070 32255250 -112027239 - MLT1J LTR MaLR -4 507 340 901 143 74 6 chr12 32255250 32255425 -112027064 + MER5A DNA MER1_type 3 189 0 714 241 129 65 chr12 32255425 32255717 -112026772 - MLT1J LTR MaLR -171 340 5 277 257 43 0 chr12 32256115 32256185 -112026304 + MER91 DNA MER1_type 1 73 -67 2133 115 10 30 chr12 32256523 32256827 -112025662 + AluSx SINE Alu 1 298 -14 204 67 0 0 chr12 32257873 32257903 -112024586 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 412 233 68 92 chr12 32258230 32258327 -112024162 + MIR SINE MIR 104 202 -60 1917 133 62 19 chr12 32258327 32258650 -112023839 + MER1B DNA MER1_type 1 337 0 1373 201 0 0 chr12 32258660 32258899 -112023590 - MER8 DNA MER2_type 0 239 1 412 233 68 92 chr12 32258899 32258953 -112023536 + MIR SINE MIR 211 262 0 287 173 284 12 chr12 32259050 32259158 -112023331 - MIR SINE MIR -67 141 41 379 275 34 53 chr12 32259837 32260033 -112022456 - MIR SINE MIR -62 146 8 477 263 51 19 chr12 32260926 32261082 -112021407 + MIR SINE MIR 102 262 0 296 310 56 76 chr12 32261110 32261307 -112021182 + MIR3 SINE MIR 9 201 -7 2034 145 54 10 chr12 32261678 32262085 -112020404 - L1MA8 LINE L1 0 6291 5867 1668 121 4 0 chr12 32262086 32262343 -112020146 + L1MA8 LINE L1 5632 5889 -402 198 333 28 0 chr12 32262635 32262743 -112019746 + L2 LINE L2 2925 3035 -237 189 133 0 0 chr12 32263694 32263724 -112018765 + MER5A DNA MER1_type 10 39 -150 293 238 12 50 chr12 32263743 32263823 -112018666 - MER81 DNA DNA -36 78 2 628 168 42 17 chr12 32263830 32263949 -112018540 + MER5A DNA MER1_type 67 188 -1 2554 88 8 0 chr12 32264982 32265334 -112017155 - THE1A LTR MaLR 0 355 1 11636 80 17 0 chr12 32265334 32266887 -112015602 - THE1A-int LTR MaLR 0 1580 1 2678 60 3 35 chr12 32266887 32267254 -112015235 - THE1A LTR MaLR 0 355 1 217 280 151 37 chr12 32267396 32267614 -112014875 + L2 LINE L2 1937 2179 -1135 280 259 201 22 chr12 32267832 32267971 -112014518 + Charlie7 DNA MER1_type 1 164 -2448 1083 239 47 14 chr12 32268134 32268410 -112014079 - MLT1J LTR MaLR -10 501 217 906 293 36 0 chr12 32268436 32268770 -112013719 + L1M4 LINE L1 2374 2719 -3427 551 249 72 22 chr12 32268784 32268965 -112013524 - MLT1J LTR MaLR -316 195 6 773 302 58 4 chr12 32269008 32269250 -112013239 + MIR SINE MIR 3 257 -5 453 190 11 34 chr12 32269250 32269373 -112013116 - MIR SINE MIR -92 116 5 271 340 20 68 chr12 32269425 32269572 -112012917 + MIR3 SINE MIR 64 203 -5 968 211 69 13 chr12 32270752 32271003 -112011486 - MIR SINE MIR 0 262 9 230 212 20 152 chr12 32270995 32271094 -112011395 + MIR3 SINE MIR 97 182 -26 * 266 315 134 7 chr12 32272287 32272436 -112010053 + MIR SINE MIR 7 174 -88 1367 172 113 59 chr12 32272505 32272947 -112009542 - MER110A LTR ERV1 0 468 3 1799 198 47 21 chr12 32273118 32273542 -112008947 - MLT1C LTR MaLR -27 440 6 406 230 33 46 chr12 32273880 32274032 -112008457 + MER112 DNA MER1_type 100 249 -11 324 338 21 28 chr12 32275062 32275207 -112007282 + MIR3 SINE MIR 24 167 -41 417 158 0 0 chr12 32275207 32275289 -112007200 + CT-rich Low_complexity Low_complexity 2 83 0 1221 106 0 0 chr12 32275289 32275469 -112007020 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 317 316 26 0 chr12 32276996 32277110 -112005379 - MIR SINE MIR -139 123 7 1509 77 0 0 chr12 32277191 32277373 -112005116 + AluSg/x SINE Alu 121 302 -10 207 0 0 0 chr12 32277695 32277718 -112004771 + (TGGG)n Simple_repeat Simple_repeat 3 25 0 2183 113 31 0 chr12 32278332 32278623 -112003866 + AluSx SINE Alu 3 302 -10 547 305 6 23 chr12 32278902 32279079 -112003410 - MIR3 SINE MIR -28 180 7 474 235 26 9 chr12 32279291 32279406 -112003083 - MIR3 SINE MIR -49 159 43 749 172 23 35 chr12 32279574 32279748 -112002741 - MER104 DNA MER2_type -4 176 5 382 253 61 10 chr12 32279940 32280039 -112002450 + MIR SINE MIR 40 143 -65 306 324 21 35 chr12 32280761 32280954 -112001535 + MIR SINE MIR 3 192 -62 557 265 157 10 chr12 32281141 32281345 -112001144 + MIR SINE MIR 16 249 -13 479 216 6 23 chr12 32281851 32282027 -112000462 + CT-rich Low_complexity Low_complexity 6 178 0 917 236 36 68 chr12 32282048 32282463 -112000026 - L1MC5 LINE L1 -51 7910 7509 247 344 26 33 chr12 32283226 32283377 -111999112 - MIR SINE MIR -28 234 85 1448 195 50 44 chr12 32283436 32283483 -111999006 + MER88 LTR ERVL 79 124 -340 1131 84 200 5 chr12 32283483 32283673 -111998816 - MER30 DNA MER1_type 0 230 4 1448 195 50 44 chr12 32283673 32284009 -111998480 + MER88 LTR ERVL 124 464 0 215 206 143 0 chr12 32284075 32284138 -111998351 - MIR3 SINE MIR -36 172 101 204 267 17 17 chr12 32284474 32284534 -111997955 - L3 LINE CR1 -7 1570 1511 308 303 22 0 chr12 32285227 32285316 -111997173 + (CACG)n Simple_repeat Simple_repeat 4 94 0 201 299 92 11 chr12 32286434 32286521 -111995968 + MIR SINE MIR 20 113 -95 1937 136 44 14 chr12 32289031 32289150 -111993339 + AluJo SINE Alu 1 115 -197 180 0 0 0 chr12 32289150 32289170 -111993319 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1937 136 44 14 chr12 32289170 32289344 -111993145 + AluJo SINE Alu 115 303 -9 269 239 36 65 chr12 32289994 32290132 -111992357 - L2 LINE L2 -219 3053 2920 550 316 19 0 chr12 32290685 32290843 -111991646 + MIR SINE MIR 1 161 -101 520 226 35 0 chr12 32291853 32291968 -111990521 - MER20 DNA MER1_type 0 219 101 232 418 22 8 chr12 32292172 32292306 -111990183 - L2 LINE L2 -10 3262 3127 241 212 61 0 chr12 32292590 32292656 -111989833 - L2 LINE L2 -345 2968 2899 225 278 0 0 chr12 32293884 32293938 -111988551 + MER91 DNA MER1_type 54 107 -89 246 179 0 36 chr12 32294520 32294576 -111987913 + Zaphod DNA AcHobo 3978 4031 0 472 339 102 42 chr12 32295494 32295925 -111986564 + L2 LINE L2 2813 3269 -3 389 311 17 8 chr12 32297260 32297379 -111985110 + MIR SINE MIR 26 145 -117 904 188 94 5 chr12 32297845 32298037 -111984452 - MER3 DNA MER1_type 0 209 1 410 220 30 20 chr12 32298942 32299042 -111983447 - MIR SINE MIR -33 229 129 238 352 7 7 chr12 32301011 32301153 -111981336 + (TG)n Simple_repeat Simple_repeat 1 142 0 186 103 0 0 chr12 32301165 32301194 -111981295 + (TG)n Simple_repeat Simple_repeat 2 30 0 1466 152 67 18 chr12 32301196 32301479 -111981010 - MER2 DNA MER2_type -1 344 48 533 289 132 0 chr12 32301802 32302006 -111980483 + MIR SINE MIR 20 250 -12 2101 122 6 3 chr12 32302120 32302431 -111980058 - AluSx SINE Alu 0 312 1 377 231 194 0 chr12 32302434 32302542 -111979947 - MIR SINE MIR -60 148 20 577 268 67 10 chr12 32302737 32302931 -111979558 + MIR SINE MIR 58 262 0 394 305 34 8 chr12 32303826 32303944 -111978545 + MIR3 SINE MIR 34 154 -54 184 321 86 12 chr12 32304205 32304286 -111978203 + L3 LINE CR1 224 310 -1267 620 365 96 58 chr12 32304292 32304915 -111977574 + L3 LINE CR1 417 1098 -479 2051 94 11 0 chr12 32304915 32305190 -111977299 + AluSc SINE Alu 16 293 -16 620 365 96 58 chr12 32305190 32305629 -111976860 + L3 LINE CR1 1098 1519 -58 2105 106 3 7 chr12 32305882 32306184 -111976305 + AluSg SINE Alu 1 301 -9 261 353 17 25 chr12 32306196 32306315 -111976174 - MER5B DNA MER1_type -60 118 1 258 277 135 14 chr12 32306315 32306444 -111976045 - MIR3 SINE MIR -51 157 12 527 283 71 80 chr12 32306648 32306973 -111975516 - L2 LINE L2 -32 3240 2919 289 274 53 11 chr12 32307119 32307214 -111975275 - MIR SINE MIR -68 140 42 216 135 0 0 chr12 32307711 32307748 -111974741 + (TG)n Simple_repeat Simple_repeat 1 37 0 308 184 105 13 chr12 32309059 32309135 -111973354 + MER5A DNA MER1_type 19 101 -88 433 274 123 0 chr12 32309198 32309344 -111973145 + MER5A DNA MER1_type 2 165 -24 221 326 113 14 chr12 32312284 32312425 -111970064 - MIR SINE MIR -13 249 95 906 140 67 11 chr12 32313308 32313487 -111969002 - MER5A DNA MER1_type 0 189 1 2153 108 150 26 chr12 32314902 32315283 -111967206 - MSTA LTR MaLR 0 428 1 1720 106 0 157 chr12 32316536 32316611 -111965878 - MER47A DNA MER2_type -1957 366 281 1902 144 16 13 chr12 32316611 32316917 -111965572 + AluJo SINE Alu 6 312 0 1720 106 0 157 chr12 32316917 32317275 -111965214 - MER47A DNA MER2_type -2042 281 1 527 315 73 23 chr12 32317995 32318214 -111964275 - MIR SINE MIR -13 249 20 358 344 57 54 chr12 32318485 32319168 -111963321 + L2 LINE L2 2500 3259 -13 266 333 141 15 chr12 32325692 32325890 -111956599 - L3 LINE CR1 -166 1411 1189 207 362 45 59 chr12 32326709 32327063 -111955426 + L2 LINE L2 2889 3237 -35 448 315 31 0 chr12 32327363 32327490 -111954999 + MIR3 SINE MIR 69 199 -9 365 219 164 68 chr12 32327498 32327644 -111954845 - MIR SINE MIR -73 189 30 183 247 212 0 chr12 32327725 32327810 -111954679 - MIR SINE MIR -71 191 89 1744 167 10 17 chr12 32328084 32328384 -111954105 + AluJb SINE Alu 1 298 -14 1345 108 0 11 chr12 32328682 32328868 -111953621 + AluSx SINE Alu 1 184 -128 235 214 0 86 chr12 32330399 32330469 -111952020 + MIR SINE MIR 95 158 -104 1224 167 76 58 chr12 32330888 32331198 -111951291 + AluJb SINE Alu 5 319 0 1191 151 64 0 chr12 32331381 32331632 -111950857 + MER33 DNA MER1_type 1 254 -70 308 358 91 41 chr12 32331918 32332139 -111950350 - MIR SINE MIR -30 232 1 473 135 0 87 chr12 32333614 32333718 -111948771 + FLAM_A SINE Alu 47 141 -1 1150 211 35 10 chr12 32333718 32334007 -111948482 + L1MB3 LINE L1 5885 6180 -3 376 139 0 47 chr12 32334024 32334110 -111948379 + (GGAAA)n Simple_repeat Simple_repeat 2 83 0 608 158 10 105 chr12 32334254 32334463 -111948026 - MER53 DNA DNA 0 189 1 1377 209 44 9 chr12 32334625 32334974 -111947515 + MLT1A2 LTR MaLR 1 414 -14 238 312 97 0 chr12 32335124 32335217 -111947272 + MIR SINE MIR 63 164 -98 664 168 6 6 chr12 32335354 32335533 -111946956 + (CA)n Simple_repeat Simple_repeat 1 179 0 788 272 82 21 chr12 32336621 32336826 -111945663 + MIR SINE MIR 4 228 -34 2485 149 22 0 chr12 32336826 32337234 -111945255 + L1MB5 LINE L1 5746 6162 -12 788 272 82 21 chr12 32337234 32337271 -111945218 + MIR SINE MIR 228 261 -1 389 328 42 60 chr12 32337676 32338078 -111944411 - MLT1J LTR MaLR -6 505 111 295 262 16 40 chr12 32338155 32338281 -111944208 - L2 LINE L2 -208 3064 2942 587 241 211 38 chr12 32338299 32338669 -111943820 - MLT1J2 LTR MaLR -16 434 1 335 285 269 21 chr12 32339074 32339316 -111943173 - L3 LINE CR1 -21 1556 1255 2328 208 35 22 chr12 32339504 32340013 -111942476 - LTR40a LTR ERVL 0 519 4 1397 274 130 22 chr12 32340353 32341028 -111941461 + L1PBa LINE L1 6 753 -6110 374 214 0 0 chr12 32341063 32341133 -111941356 + L1PBa LINE L1 1094 1163 -5700 9021 157 29 4 chr12 32341155 32343657 -111938832 + L1PBa LINE L1 1337 3901 -2961 1321 55 0 0 chr12 32343673 32343837 -111938652 - AluY SINE Alu -12 299 136 5815 106 4 0 chr12 32343837 32344621 -111937868 + HERVK3 LTR ERVK 6451 7237 -6 2473 167 9 23 chr12 32344626 32345064 -111937425 + LTR3 LTR ERVK 1 432 0 403 97 0 28 chr12 32345070 32345142 -111937347 + L1PB1 LINE L1 6079 6148 -3 390 284 88 31 chr12 32345311 32345572 -111936917 + L1MC4a LINE L1 5296 5571 -2237 376 241 9 35 chr12 32345604 32345720 -111936769 + L1MC4a LINE L1 5699 5811 -1997 1490 194 0 36 chr12 32345799 32346108 -111936381 - AluJo SINE Alu -14 298 1 311 315 47 24 chr12 32346108 32346235 -111936254 + L1MC4a LINE L1 5801 5930 -1878 2290 50 28 0 chr12 32346246 32346529 -111935960 - AluY SINE Alu -20 291 1 679 188 77 44 chr12 32346969 32347150 -111935339 + MER5A DNA MER1_type 1 187 -2 307 267 40 0 chr12 32347216 32347317 -111935172 - MER5A DNA MER1_type -83 106 2 201 274 104 28 chr12 32347561 32347667 -111934822 - MIR SINE MIR -57 151 38 396 0 0 0 chr12 32349144 32349188 -111933301 + (TC)n Simple_repeat Simple_repeat 2 45 0 342 0 0 0 chr12 32349187 32349225 -111933264 + (TG)n Simple_repeat Simple_repeat 1 38 0 * 287 363 49 0 chr12 32350205 32350307 -111932182 + MIR3 SINE MIR 85 191 -17 186 150 0 0 chr12 32352270 32352310 -111930179 + (A)n Simple_repeat Simple_repeat 1 40 0 240 248 37 55 chr12 32352312 32352421 -111930068 + L1ME4a LINE L1 5964 6070 -51 1590 188 0 13 chr12 32352561 32352865 -111929624 + AluJo SINE Alu 6 305 -7 1321 118 51 0 chr12 32355296 32355491 -111926998 - AluSq SINE Alu -108 205 1 962 147 0 0 chr12 32356310 32356467 -111926022 + AluJb SINE Alu 137 293 -19 223 290 80 20 chr12 32356895 32356995 -111925494 - L2 LINE L2 -220 3052 2947 1804 242 106 29 chr12 32358138 32358927 -111923562 - L1MDb LINE L1 -4799 1607 792 575 181 152 0 chr12 32359603 32359741 -111922748 - L1MDb LINE L1 -5958 438 280 425 254 77 81 chr12 32359921 32360169 -111922320 - HAL1 LINE L1 -1220 1287 1041 1517 165 30 3 chr12 32360428 32360725 -111921764 - AluJb SINE Alu -7 305 1 228 286 14 29 chr12 32361200 32361270 -111921219 - L2 LINE L2 -50 3222 3154 21 0 0 0 chr12 32361490 32361511 -111920978 + AT_rich Low_complexity Low_complexity 1 21 0 7496 162 21 23 chr12 32361515 32363828 -111918661 - L1PB1 LINE L1 -6 6145 3846 1593 178 3 11 chr12 32363828 32364115 -111918374 - AluSx SINE Alu -27 285 1 7496 162 21 23 chr12 32364115 32364257 -111918232 - L1PB1 LINE L1 -2305 3846 3705 298 294 23 40 chr12 32364340 32364447 -111918042 - L1MC/D LINE L1 -2006 5802 5698 1204 117 0 0 chr12 32364447 32364618 -111917871 - L1PA10 LINE L1 -1 6167 5997 298 294 23 40 chr12 32364618 32364687 -111917802 - L1MC/D LINE L1 -2110 5698 5629 1942 124 61 28 chr12 32364842 32365205 -111917284 - THE1C LTR MaLR 0 375 1 415 267 70 33 chr12 32365323 32365587 -111916902 - HAL1b LINE L1 -770 1657 1404 2305 129 0 8 chr12 32365587 32365951 -111916538 - L1PA13 LINE L1 -1 6162 5802 573 225 60 28 chr12 32365976 32366158 -111916331 - L1MC5 LINE L1 -63 7898 7711 301 309 21 32 chr12 32366360 32366454 -111916035 - MIR SINE MIR -95 113 21 562 293 141 0 chr12 32366682 32366931 -111915558 - L2 LINE L2 -18 3295 3012 2668 205 25 9 chr12 32366932 32367493 -111914996 - LTR24B LTR ERV1 -6 570 1 535 276 58 36 chr12 32367499 32367724 -111914765 - L2 LINE L2 -353 2961 2732 402 340 89 0 chr12 32368258 32368461 -111914028 + MIR SINE MIR 13 233 -29 612 339 106 9 chr12 32369091 32369753 -111912736 + L2 LINE L2 2557 3309 -4 817 213 0 0 chr12 32369837 32369987 -111912502 + FRAM SINE Alu 1 145 -31 181 50 25 50 chr12 32370112 32370152 -111912337 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 329 168 176 69 chr12 32370160 32370291 -111912198 + L1ME4a LINE L1 5966 6110 -11 528 197 27 132 chr12 32371178 32371412 -111911077 - MLT1C LTR MaLR -223 244 28 279 79 0 0 chr12 32371904 32371942 -111910547 + (TG)n Simple_repeat Simple_repeat 1 38 0 285 333 0 0 chr12 32372324 32372408 -111910081 + (CA)n Simple_repeat Simple_repeat 1 84 0 337 313 55 43 chr12 32372519 32372682 -111909807 + MIR SINE MIR 51 215 -47 234 264 0 0 chr12 32373576 32373629 -111908860 - MIR SINE MIR -6 256 204 366 200 13 0 chr12 32373886 32373961 -111908528 + MER4C LTR ERV1 390 465 0 2201 204 24 44 chr12 32374626 32375131 -111907358 + LTR42 LTR ERVL 1 495 0 1030 279 46 29 chr12 32375274 32375621 -111906868 + MLT1J LTR MaLR 81 433 -78 182 210 97 32 chr12 32375684 32375746 -111906743 + MIR SINE MIR 172 237 -25 2239 85 0 19 chr12 32375959 32376276 -111906213 + AluY SINE Alu 1 311 0 1216 235 71 0 chr12 32376562 32376689 -111905800 + AluJo SINE Alu 2 119 -183 212 0 0 35 chr12 32376689 32376718 -111905771 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1216 235 71 0 chr12 32376718 32376871 -111905618 + AluJo SINE Alu 119 302 0 262 329 36 21 chr12 32376984 32377124 -111905365 + MER87 LTR ERV1 400 541 0 393 254 78 111 chr12 32377251 32377495 -111904994 + MER87-int LTR ERV1 54 289 -1497 2067 71 4 7 chr12 32377500 32377781 -111904708 - AluY SINE Alu -3 308 29 345 303 70 43 chr12 32378002 32378302 -111904187 + MER87-int LTR ERV1 460 767 -6355 1405 309 71 62 chr12 32378587 32379702 -111902787 + MER87-int LTR ERV1 937 2061 -5061 1616 325 56 36 chr12 32379744 32380631 -111901858 + MER87-int LTR ERV1 2208 3063 -4059 1565 197 0 16 chr12 32380631 32380936 -111901553 - AluJo SINE Alu -12 300 1 1616 325 56 36 chr12 32380936 32381247 -111901242 + MER87-int LTR ERV1 3063 3366 -3756 1414 162 31 119 chr12 32381265 32381762 -111900727 + MER4A LTR ERV1 157 465 0 789 182 45 0 chr12 32381764 32381918 -111900571 - Tigger3b DNA MER2_type -149 1082 922 3786 168 76 86 chr12 32381927 32382861 -111899628 + MER21A LTR ERV1 1 925 -6 4870 143 82 8 chr12 32382868 32383418 -111899071 - Tigger3b DNA MER2_type -2101 927 288 1398 203 13 23 chr12 32383418 32383718 -111898771 + AluJo SINE Alu 1 297 -15 4870 143 82 8 chr12 32383718 32384030 -111898459 - Tigger3b DNA MER2_type -2740 288 1 4300 175 45 60 chr12 32384700 32384996 -111897493 - L1MB2 LINE L1 0 6171 5872 1947 155 65 30 chr12 32384996 32385361 -111897128 + MLT2D LTR ERVL 1 383 -31 306 0 0 0 chr12 32385361 32385395 -111897094 + (CA)n Simple_repeat Simple_repeat 2 35 0 1947 155 65 30 chr12 32385395 32385429 -111897060 + MLT2D LTR ERVL 383 414 0 4300 175 45 60 chr12 32385429 32385805 -111896684 - L1MB2 LINE L1 -299 5872 5492 1708 179 0 13 chr12 32385805 32386113 -111896376 - AluJo SINE Alu -7 305 2 243 0 0 0 chr12 32386113 32386140 -111896349 + (TG)n Simple_repeat Simple_repeat 2 28 0 4300 175 45 60 chr12 32386140 32386747 -111895742 - L1MB2 LINE L1 -677 5494 4929 822 254 27 27 chr12 32387183 32387403 -111895086 + MSTB1 LTR MaLR 1 220 -212 678 286 22 43 chr12 32387469 32387700 -111894789 - MIR SINE MIR 0 262 37 2052 42 0 30 chr12 32387701 32387963 -111894526 - AluY SINE Alu -7 304 51 331 342 75 25 chr12 32388436 32388717 -111893772 + L2 LINE L2 2554 2848 -466 5756 113 47 36 chr12 32388717 32390232 -111892257 + pTR5 LTR ERV1 742 2438 0 407 132 13 26 chr12 32390430 32390506 -111891983 - L1M LINE L1 -794 5389 5315 276 268 57 73 chr12 32390834 32390957 -111891532 - MIR3 SINE MIR -30 178 58 597 162 9 18 chr12 32392406 32392517 -111889972 - MLT1A2 LTR MaLR 0 374 265 461 243 65 9 chr12 32392988 32393143 -111889346 + MIR SINE MIR 30 191 -66 483 269 151 21 chr12 32393263 32393449 -111889040 - L2 LINE L2 0 3313 3104 197 224 13 66 chr12 32393547 32393623 -111888866 - L2 LINE L2 -311 3002 2931 435 238 168 27 chr12 32394099 32394284 -111888205 + MIR SINE MIR 47 257 -5 2458 44 10 0 chr12 32395138 32395436 -111887053 + AluY SINE Alu 1 301 -10 2347 77 0 0 chr12 32396260 32396559 -111885930 - AluY SINE Alu -12 299 1 360 210 38 140 chr12 32396692 32396849 -111885640 - HAL1 LINE L1 -379 2128 1988 939 234 59 53 chr12 32396896 32397233 -111885256 - MLT1A2 LTR MaLR 0 374 36 513 100 100 22 chr12 32397233 32397323 -111885166 - FLAM_A SINE Alu -16 126 30 231 340 39 29 chr12 32397450 32397553 -111884936 - HAL1 LINE L1 -580 1927 1824 308 320 0 0 chr12 32397605 32397680 -111884809 - HAL1 LINE L1 -1631 876 802 350 317 207 32 chr12 32397708 32398330 -111884159 - HAL1 LINE L1 -1767 740 10 1493 202 11 11 chr12 32398330 32398617 -111883872 - AluJo SINE Alu -25 287 1 180 250 0 83 chr12 32399190 32399262 -111883227 + L2 LINE L2 3195 3260 -12 23 0 0 0 chr12 32399780 32399803 -111882686 + AT_rich Low_complexity Low_complexity 1 23 0 327 314 81 72 chr12 32399840 32400076 -111882413 - MIR SINE MIR -23 239 2 1454 223 20 70 chr12 32400277 32400680 -111881809 - MLT1B LTR MaLR 0 390 8 666 180 0 0 chr12 32400736 32400847 -111881642 + FLAM_A SINE Alu 10 120 -22 264 391 19 6 chr12 32402906 32403067 -111879422 - MIR SINE MIR -79 183 21 223 274 16 0 chr12 32403299 32403361 -111879128 - L2 LINE L2 -24 3248 3186 318 314 167 40 chr12 32403631 32403984 -111878505 + L2 LINE L2 2873 3270 -2 499 355 81 15 chr12 32404836 32405168 -111877321 - L2 LINE L2 -5 3267 2914 199 273 0 0 chr12 32408621 32408665 -111873824 - MIR SINE MIR -66 142 99 445 261 92 8 chr12 32408818 32408948 -111873541 - MIR SINE MIR -75 187 47 195 292 56 34 chr12 32409902 32409991 -111872498 - MIR SINE MIR -114 148 58 2126 89 6 22 chr12 32411006 32411320 -111871169 + AluSx SINE Alu 1 309 -3 222 316 82 0 chr12 32414872 32414970 -111867519 + MIR SINE MIR 46 151 -111 2294 73 0 3 chr12 32414970 32415270 -111867219 + AluY SINE Alu 1 299 -12 670 267 174 23 chr12 32416279 32416649 -111865840 - L1MC4 LINE L1 -807 7001 6534 2056 109 30 0 chr12 32416649 32416951 -111865538 - AluSx SINE Alu -1 311 1 670 267 174 23 chr12 32416951 32417094 -111865395 - L1MC4 LINE L1 -1274 6534 6414 436 286 33 14 chr12 32417214 32417427 -111865062 - L1MC4a LINE L1 -1538 6270 6054 569 267 157 38 chr12 32417662 32417899 -111864590 - L1MC4a LINE L1 -692 5642 5429 245 295 0 13 chr12 32417899 32417977 -111864512 - MER5B DNA MER1_type -101 77 1 2211 96 0 16 chr12 32424618 32424921 -111857568 + AluY SINE Alu 1 298 -13 480 210 58 62 chr12 32425545 32425802 -111856687 + L1MC5 LINE L1 7452 7707 -254 1665 151 0 66 chr12 32425802 32426134 -111856355 + AluSx SINE Alu 1 312 0 270 217 0 33 chr12 32426149 32426209 -111856280 + AluJ/FLAM SINE Alu 3 60 -242 363 251 123 14 chr12 32426220 32426439 -111856050 - L1MC4a LINE L1 -1603 4543 4301 507 33 0 0 chr12 32426452 32426513 -111855976 + (TG)n Simple_repeat Simple_repeat 2 62 0 1522 246 23 20 chr12 32426523 32426962 -111855527 + L1M4 LINE L1 3784 4223 -1923 931 176 37 42 chr12 32426962 32427178 -111855311 - AluJo SINE Alu 0 312 98 977 251 21 4 chr12 32428009 32428252 -111854237 - MLT1C LTR MaLR 0 467 221 396 40 0 0 chr12 32428268 32428318 -111854171 + (TG)n Simple_repeat Simple_repeat 2 51 0 450 195 25 34 chr12 32428318 32428436 -111854053 - MLT1C LTR MaLR -298 169 53 331 347 66 16 chr12 32429383 32429504 -111852985 + L1MC4 LINE L1 6577 6703 -1339 313 346 37 22 chr12 32429917 32430053 -111852436 - MIR SINE MIR -73 189 52 2796 210 41 31 chr12 32430941 32431642 -111850847 + L1MA9 LINE L1 5575 6282 -30 1872 138 3 35 chr12 32432997 32433315 -111849174 + AluSx SINE Alu 5 312 0 1256 115 60 0 chr12 32434092 32434292 -111848197 + L1MA2 LINE L1 6093 6304 0 888 115 14 20 chr12 32434989 32435137 -111847352 + HERVE LTR ERV1 3249 3395 -4418 932 121 7 20 chr12 32436466 32436615 -111845874 + HERVE LTR ERV1 3249 3395 -4418 228 319 94 44 chr12 32437000 32437393 -111845096 - SATR1 Satellite Satellite -21 743 28 263 305 20 35 chr12 32437647 32437847 -111844642 - SATR1 Satellite Satellite -131 339 143 882 86 71 21 chr12 32438111 32438251 -111844238 + HERVE LTR ERV1 3249 3395 -4418 233 289 14 43 chr12 32438462 32438673 -111843816 - SATR1 Satellite Satellite -101 369 165 4131 96 2 10 chr12 32438708 32439311 -111843178 + HERVE LTR ERV1 3249 3846 -3967 1427 274 80 48 chr12 32439322 32440565 -111841924 - SATR1 Satellite Satellite -90 1282 1 4142 97 2 10 chr12 32440600 32441199 -111841290 + HERVE LTR ERV1 3253 3846 -3967 1466 222 89 47 chr12 32441210 32441865 -111840624 - SATR1 Satellite Satellite 0 682 1 28 48 0 0 chr12 32442141 32442183 -111840306 + AT_rich Low_complexity Low_complexity 1 42 0 224 293 0 0 chr12 32442729 32442787 -111839702 + L2 LINE L2 3255 3312 -1 1555 157 96 56 chr12 32443241 32443616 -111838873 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr12 32444169 32444190 -111838299 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 32444248 32444276 -111838213 + AT_rich Low_complexity Low_complexity 1 28 0 2229 117 0 0 chr12 32444301 32444591 -111837898 - AluSx SINE Alu -22 290 1 243 324 108 7 chr12 32445769 32445908 -111836581 - MER5A DNA MER1_type -2 187 35 26 0 0 0 chr12 32448047 32448073 -111834416 + AT_rich Low_complexity Low_complexity 1 26 0 208 146 0 24 chr12 32448624 32448665 -111833824 + (CAA)n Simple_repeat Simple_repeat 3 42 0 225 0 0 0 chr12 32452175 32452200 -111830289 + (TTG)n Simple_repeat Simple_repeat 3 27 0 3922 134 34 0 chr12 32454466 32455083 -111827406 + Tigger3b DNA MER2_type 1 638 -593 2091 164 8 11 chr12 32455084 32455443 -111827046 + Tigger3b DNA MER2_type 874 1231 0 333 244 32 32 chr12 32456030 32456153 -111826336 - MIR SINE MIR -1 261 139 234 0 0 0 chr12 32456161 32456187 -111826302 + (CA)n Simple_repeat Simple_repeat 2 27 0 572 329 79 57 chr12 32458084 32458644 -111823845 + HAL1b LINE L1 21 592 -756 702 190 0 0 chr12 32458692 32458813 -111823676 - AluJb SINE Alu -17 295 175 2434 58 0 3 chr12 32459030 32459323 -111823166 - AluY SINE Alu -19 292 1 23 33 0 0 chr12 32459377 32459407 -111823082 + AT_rich Low_complexity Low_complexity 1 30 0 663 308 62 47 chr12 32460097 32460561 -111821928 + L1M4 LINE L1 2792 3262 -2884 691 115 8 41 chr12 32460562 32460684 -111821805 - MER4C LTR ERV1 -347 118 1 445 179 65 92 chr12 32460692 32460746 -111821743 + L1MC4 LINE L1 7864 7918 -124 345 47 0 0 chr12 32460746 32460789 -111821700 + (TG)n Simple_repeat Simple_repeat 2 44 0 445 179 65 92 chr12 32460789 32460918 -111821571 + L1MC4 LINE L1 7918 8042 0 210 143 0 0 chr12 32461264 32461299 -111821190 + (CA)n Simple_repeat Simple_repeat 2 36 0 1517 199 3 14 chr12 32461305 32461602 -111820887 - AluSx SINE Alu -18 294 1 225 228 177 44 chr12 32461822 32461980 -111820509 + L1ME4a LINE L1 5882 6060 -61 2098 32 0 0 chr12 32463361 32463610 -111818879 - L1PA3 LINE L1 -1 6154 5906 306 215 0 0 chr12 32463760 32463839 -111818650 + (TA)n Simple_repeat Simple_repeat 2 80 0 504 261 139 28 chr12 32464252 32464432 -111818057 + MIR SINE MIR 31 230 -32 253 243 57 113 chr12 32464430 32464607 -111817882 - MIR SINE MIR -83 179 13 * 2563 138 162 22 chr12 32464625 32465088 -111817401 + MER1A DNA MER1_type 1 528 -1 21 71 0 0 chr12 32466242 32466284 -111816205 + AT_rich Low_complexity Low_complexity 1 42 0 2304 84 3 26 chr12 32467239 32467549 -111814940 - AluSx SINE Alu -9 303 1 219 191 0 0 chr12 32467555 32467597 -111814892 - L2 LINE L2 -1 3312 3271 3772 106 9 110 chr12 32468173 32468626 -111813863 + MER4A LTR ERV1 1 353 -311 2162 133 0 0 chr12 32468626 32468934 -111813555 - AluSx SINE Alu -4 308 1 3772 106 9 110 chr12 32468934 32469218 -111813271 + MER4A LTR ERV1 353 664 0 21 71 0 0 chr12 32469371 32469413 -111813076 + AT_rich Low_complexity Low_complexity 1 42 0 556 275 78 6 chr12 32469448 32469615 -111812874 - MIR SINE MIR -61 201 23 234 293 54 81 chr12 32470450 32470747 -111811742 + L1MC/D LINE L1 5357 5645 -2163 1636 168 41 0 chr12 32470797 32471088 -111811401 - AluJo SINE Alu -9 303 1 22 0 0 0 chr12 32472321 32472343 -111810146 + AT_rich Low_complexity Low_complexity 1 22 0 231 274 137 21 chr12 32472784 32472879 -111809610 - MIR SINE MIR -96 112 7 542 354 6 11 chr12 32474154 32474335 -111808154 + MIR SINE MIR 5 184 -78 1951 117 3 14 chr12 32474375 32474696 -111807793 - AluSq SINE Alu 0 318 1 24 32 0 0 chr12 32474737 32474768 -111807721 + AT_rich Low_complexity Low_complexity 1 31 0 243 285 78 53 chr12 32474935 32475216 -111807273 + L1ME LINE L1 5523 5810 -311 2254 111 0 0 chr12 32475863 32476169 -111806320 - AluSg SINE Alu -4 306 1 882 199 20 34 chr12 32476874 32476925 -111805564 - L1MA6 LINE L1 0 6300 6250 2061 140 0 7 chr12 32476925 32477225 -111805264 + AluSx SINE Alu 1 298 -14 882 199 20 34 chr12 32477225 32477253 -111805236 - L1MA6 LINE L1 -50 6250 6223 228 35 0 0 chr12 32477253 32477282 -111805207 + (CA)n Simple_repeat Simple_repeat 2 30 0 882 199 20 34 chr12 32477282 32477466 -111805023 - L1MA6 LINE L1 -77 6223 6053 467 296 37 26 chr12 32479399 32479588 -111802901 + LTR67 LTR ERVL 29 219 -338 338 174 116 174 chr12 32480257 32480429 -111802060 + MER105 DNA DNA 2 163 -41 42632 34 23 1 chr12 32480653 32486673 -111795816 + L1PA3 LINE L1 2 6155 0 21 0 0 0 chr12 32486673 32486694 -111795795 + AT_rich Low_complexity Low_complexity 1 21 0 694 323 39 0 chr12 32486779 32487008 -111795481 + MIR SINE MIR 23 260 -2 2204 160 71 13 chr12 32487039 32487375 -111795114 + MSTA LTR MaLR 1 365 -63 2240 121 0 3 chr12 32487375 32487682 -111794807 - AluSq SINE Alu -7 306 1 2204 160 71 13 chr12 32487682 32487738 -111794751 + MSTA LTR MaLR 365 416 -12 244 308 48 29 chr12 32487763 32487867 -111794622 + L2 LINE L2 3171 3276 -37 64 106 0 0 chr12 32488583 32488829 -111793660 + AT_rich Low_complexity Low_complexity 1 246 0 281 307 34 45 chr12 32489513 32489692 -111792797 + MIR SINE MIR 86 262 0 218 203 31 47 chr12 32492091 32492155 -111790334 - MIR SINE MIR -126 136 74 355 361 22 46 chr12 32492444 32492812 -111789677 - L2 LINE L2 -341 2973 2615 302 306 32 81 chr12 32492817 32493065 -111789424 + HAL1 LINE L1 151 386 -2121 2233 53 0 11 chr12 32493065 32493348 -111789141 + AluY SINE Alu 22 301 -10 205 200 0 0 chr12 32494004 32494044 -111788445 + (TA)n Simple_repeat Simple_repeat 2 41 0 2452 73 0 10 chr12 32494115 32494429 -111788060 - AluY SINE Alu 0 311 1 325 258 0 0 chr12 32494442 32494508 -111787981 - MER5A DNA MER1_type -123 66 1 213 328 0 0 chr12 32494651 32494709 -111787780 + L2 LINE L2 3215 3272 0 209 271 188 33 chr12 32494812 32494993 -111787496 - MIR SINE MIR -6 256 48 191 375 68 52 chr12 32496627 32497027 -111785462 + L2 LINE L2 2145 2550 -764 5717 21 0 0 chr12 32497822 32498433 -111784056 - SVA Other Other -1 1385 775 242 214 29 43 chr12 32498650 32498720 -111783769 - MER92C LTR ERV1 -209 345 277 189 0 0 0 chr12 32498924 32498945 -111783544 + (TAAAAA)n Simple_repeat Simple_repeat 1 21 0 265 138 52 0 chr12 32498973 32499031 -111783458 + L1MB2 LINE L1 6111 6171 0 341 244 71 54 chr12 32499079 32499247 -111783242 + L1M4 LINE L1 3029 3199 -2947 22 56 0 0 chr12 32499794 32499830 -111782659 + AT_rich Low_complexity Low_complexity 1 36 0 211 146 167 0 chr12 32500043 32500091 -111782398 + MER5A DNA MER1_type 134 189 0 211 311 0 0 chr12 32500146 32500191 -111782298 + L2 LINE L2 3013 3057 -256 472 244 26 0 chr12 32500249 32500364 -111782125 - MER58 DNA MER1_type -97 118 1 205 245 53 43 chr12 32500398 32500492 -111781997 + L2 LINE L2 3125 3219 -94 423 225 23 31 chr12 32500538 32500667 -111781822 + MER94 DNA DNA 7 134 0 206 225 0 0 chr12 32500724 32500764 -111781725 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 300 283 162 6 chr12 32501260 32501433 -111781056 - L1ME4a LINE L1 -20 6101 5902 1967 156 3 10 chr12 32501596 32502036 -111780453 - AluJb SINE Alu 0 438 1 2117 91 14 10 chr12 32502364 32502660 -111779829 + AluSq SINE Alu 1 297 -16 281 68 23 0 chr12 32502660 32502704 -111779785 + (GGGA)n Simple_repeat Simple_repeat 1 45 0 24 0 0 0 chr12 32503463 32503487 -111779002 + AT_rich Low_complexity Low_complexity 1 24 0 297 319 14 0 chr12 32503690 32503759 -111778730 + MIR SINE MIR 10 79 -183 226 253 0 60 chr12 32503802 32503885 -111778604 + MIR SINE MIR 183 260 -2 1234 88 6 6 chr12 32504292 32504452 -111778037 - L1PA15 LINE L1 -9 6156 5997 215 344 48 8 chr12 32504602 32504727 -111777762 + L2 LINE L2 3180 3309 -4 2018 111 11 0 chr12 32504808 32505087 -111777402 + AluSx SINE Alu 5 286 -26 642 228 70 35 chr12 32505133 32505304 -111777185 + MIR SINE MIR 86 262 0 217 238 0 0 chr12 32505426 32505468 -111777021 + (TG)n Simple_repeat Simple_repeat 1 42 0 22 0 0 0 chr12 32506461 32506483 -111776006 + AT_rich Low_complexity Low_complexity 1 22 0 36 23 0 0 chr12 32506706 32506749 -111775740 + AT_rich Low_complexity Low_complexity 1 43 0 7458 58 1 0 chr12 32506818 32508240 -111774249 - L1PA7 LINE L1 -4 6150 4726 * 7985 60 19 2 chr12 32508237 32509956 -111772533 + L1PA5 LINE L1 4416 6147 -7 300 305 86 33 chr12 32510011 32510221 -111772268 - L1MEd LINE L1 -5066 1053 833 770 147 175 34 chr12 32511159 32511336 -111771153 + MER3 DNA MER1_type 7 208 -1 224 192 64 0 chr12 32511690 32511768 -111770721 + (TA)n Simple_repeat Simple_repeat 2 84 0 227 295 154 45 chr12 32511846 32512002 -111770487 + MIR SINE MIR 13 185 -77 23 0 0 0 chr12 32512305 32512328 -111770161 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr12 32513123 32513152 -111769337 + AT_rich Low_complexity Low_complexity 1 29 0 180 111 0 0 chr12 32516901 32516928 -111765561 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 3330 70 2 5 chr12 32516944 32517361 -111765128 - L1PA6 LINE L1 -1 6153 5738 227 306 0 35 chr12 32517762 32517868 -111764621 + MER5A DNA MER1_type 26 139 -50 21 36 0 0 chr12 32518489 32518517 -111763972 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr12 32519352 32519373 -111763116 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2198 99 0 23 chr12 32519375 32519677 -111762812 - AluSx SINE Alu -17 295 1 235 150 0 50 chr12 32523365 32523425 -111759064 + (TAAAAA)n Simple_repeat Simple_repeat 2 58 0 4784 146 62 50 chr12 32524138 32524453 -111758036 + MER4D LTR ERV1 1 311 -592 894 121 7 28 chr12 32524453 32524594 -111757895 - L1PA8 LINE L1 -7 6165 6028 4784 146 62 50 chr12 32524594 32525171 -111757318 + MER4D LTR ERV1 311 903 0 774 314 20 8 chr12 32525262 32525501 -111756988 + MIR SINE MIR 1 241 -21 266 273 85 55 chr12 32525731 32525896 -111756593 - MLT1L LTR MaLR -6 609 440 239 261 0 11 chr12 32526006 32526098 -111756391 + CT-rich Low_complexity Low_complexity 6 96 0 1175 308 23 21 chr12 32526203 32526631 -111755858 + LTR16A LTR ERVL 17 445 -5 313 282 159 49 chr12 32527006 32527169 -111755320 - MER5A DNA MER1_type 0 189 9 202 256 13 90 chr12 32527216 32527294 -111755195 + MER5B DNA MER1_type 37 108 -70 * 287 308 0 0 chr12 32527271 32527336 -111755153 + MER5A DNA MER1_type 10 74 -115 444 37 0 0 chr12 32527336 32527390 -111755099 - L1PA4 LINE L1 -356 5799 5746 3173 31 3 0 chr12 32527390 32527741 -111754748 + L1PA4 LINE L1 5789 6143 -12 474 241 116 0 chr12 32527746 32527858 -111754631 + MER5A DNA MER1_type 65 189 0 3014 277 34 62 chr12 32528089 32529505 -111752984 + L2 LINE L2 1923 3289 -24 249 286 0 22 chr12 32530229 32530320 -111752169 + L1MC4 LINE L1 6615 6703 -1339 217 238 36 0 chr12 32530352 32530436 -111752053 + (TATATG)n Simple_repeat Simple_repeat 3 89 0 230 227 10 82 chr12 32530439 32530536 -111751953 - L1MC4 LINE L1 -1339 6703 6614 * 245 178 206 0 chr12 32530464 32530537 -111751952 + L1MC4 LINE L1 6615 6702 -1340 2518 50 0 10 chr12 32530947 32531248 -111751241 + AluY SINE Alu 1 298 -13 1587 172 8 0 chr12 32531706 32531968 -111750521 + AluJb SINE Alu 11 274 -38 825 87 0 0 chr12 32531968 32532083 -111750406 + (TTTC)n Simple_repeat Simple_repeat 4 118 0 252 0 0 0 chr12 32532084 32532112 -111750377 + (TA)n Simple_repeat Simple_repeat 1 28 0 243 0 0 0 chr12 32532111 32532138 -111750351 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 1833 207 74 94 chr12 32532273 32532838 -111749651 - MLT2B3 LTR ERVL 0 554 1 10946 190 19 20 chr12 32532838 32534834 -111747655 + L1PA13 LINE L1 348 2278 -4509 226 294 109 0 chr12 32535041 32535133 -111747356 + MIR SINE MIR 46 147 -115 311 100 0 0 chr12 32535815 32535855 -111746634 + L1PB1 LINE L1 6013 6052 -99 370 330 17 0 chr12 32535935 32536050 -111746439 + GA-rich Low_complexity Low_complexity 4 120 0 427 304 65 34 chr12 32537621 32537914 -111744575 + MLT1K LTR MaLR 158 459 -129 841 277 29 0 chr12 32538708 32538946 -111743543 - MIR SINE MIR -3 259 15 301 261 236 0 chr12 32539499 32539656 -111742833 + L2 LINE L2 2863 3056 -257 678 256 150 0 chr12 32539721 32539928 -111742561 + MIR SINE MIR 25 262 0 378 336 30 0 chr12 32539983 32540117 -111742372 + L2 LINE L2 3134 3271 -1 180 211 105 0 chr12 32541565 32541603 -111740886 + MIR SINE MIR 80 121 -141 196 325 214 0 chr12 32541841 32541967 -111740522 + MIR SINE MIR 102 254 -8 306 313 77 22 chr12 32545533 32545715 -111736774 + MIR SINE MIR 70 261 -1 2207 90 40 10 chr12 32545875 32546197 -111736292 - AluSp SINE Alu 0 313 1 231 340 57 14 chr12 32546503 32546644 -111735845 + MIR3 SINE MIR 1 147 -61 1722 157 39 20 chr12 32547689 32547995 -111734494 + AluJo SINE Alu 1 312 0 352 304 43 68 chr12 32548055 32548158 -111734331 - L1ME4a LINE L1 -244 5877 5773 2025 157 3 0 chr12 32548158 32548463 -111734026 + AluSg SINE Alu 1 306 -4 352 304 43 68 chr12 32548463 32548711 -111733778 - L1ME4a LINE L1 -348 5773 5535 984 181 6 0 chr12 32548775 32548946 -111733543 + FRAM SINE Alu 5 176 0 291 290 0 0 chr12 32548956 32549049 -111733440 - L1P5 LINE L1 -705 5451 5359 322 290 38 8 chr12 32549197 32549328 -111733161 + MIR SINE MIR 1 135 -127 1386 167 29 0 chr12 32550225 32550464 -111732025 + AluSx SINE Alu 49 294 -18 189 226 38 0 chr12 32550890 32550943 -111731546 + MIR SINE MIR 21 75 -133 314 285 106 26 chr12 32552318 32552471 -111730018 + MIR SINE MIR 4 170 -62 213 217 0 22 chr12 32552544 32552590 -111729899 + GA-rich Low_complexity Low_complexity 3 47 0 498 258 121 10 chr12 32554102 32554300 -111728189 + MIR SINE MIR 41 260 -2 360 314 76 31 chr12 32554241 32554464 -111728025 - MIR SINE MIR -14 248 16 * 415 288 120 5 chr12 32555020 32555211 -111727278 - MIR SINE MIR -49 213 1 236 213 0 0 chr12 32555223 32555270 -111727219 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 1986 103 68 4 chr12 32556030 32556311 -111726178 + AluSq SINE Alu 1 299 -14 286 294 24 12 chr12 32556382 32556467 -111726022 + LTR39 LTR ERV1 698 783 0 1528 165 24 0 chr12 32557336 32557584 -111724905 - AluJo SINE Alu -22 290 37 2463 70 3 0 chr12 32557669 32557971 -111724518 + AluSp SINE Alu 2 304 -9 379 303 8 8 chr12 32558646 32558778 -111723711 + MER70-int LTR ERVL 4535 4666 -357 316 280 18 110 chr12 32558877 32559159 -111723330 + LTR39-int LTR ERV1 7809 8064 -56 269 132 0 0 chr12 32559127 32559165 -111723324 + LTR39-int LTR ERV1 8312 8349 -50 * 4109 139 81 21 chr12 32559210 32559937 -111722552 + LTR39 LTR ERV1 1 771 -12 483 291 74 108 chr12 32559959 32560127 -111722362 - L2 LINE L2 -528 2786 2614 1880 171 0 3 chr12 32560127 32560419 -111722070 + AluJo SINE Alu 1 291 -21 483 291 74 108 chr12 32560419 32560928 -111721561 - L2 LINE L2 -700 2614 2132 1794 185 0 0 chr12 32561127 32561413 -111721076 + AluJo SINE Alu 1 286 -26 26 0 0 0 chr12 32561413 32561439 -111721050 + AT_rich Low_complexity Low_complexity 1 26 0 2192 105 0 0 chr12 32561442 32561728 -111720761 - AluSx SINE Alu -26 286 1 26 50 0 0 chr12 32561798 32561838 -111720651 + AT_rich Low_complexity Low_complexity 1 40 0 447 181 18 134 chr12 32562743 32562815 -111719674 - MER105 DNA DNA -20 184 142 2295 124 0 0 chr12 32562815 32563121 -111719368 + AluSx SINE Alu 1 306 -6 447 181 18 134 chr12 32563121 32563219 -111719270 - MER105 DNA DNA -62 142 34 2091 286 51 39 chr12 32563442 32564265 -111718224 - HERV16 LTR ERVL -3540 1456 624 2297 107 3 0 chr12 32565339 32565639 -111716850 + AluSg SINE Alu 1 301 -9 994 299 78 51 chr12 32566814 32567517 -111714972 - HERV16 LTR ERVL -4274 722 1 940 295 76 22 chr12 32567517 32567927 -111714562 - LTR16A LTR ERVL 0 450 19 2218 111 35 32 chr12 32568046 32568204 -111714285 - Tigger2 DNA MER2_type -75 2643 2487 2331 90 23 0 chr12 32568204 32568503 -111713986 + AluSx SINE Alu 2 307 -5 2218 111 35 32 chr12 32568503 32568714 -111713775 - Tigger2 DNA MER2_type -231 2487 2273 1262 173 14 0 chr12 32568723 32568937 -111713552 + AluJb SINE Alu 86 302 -10 400 127 0 0 chr12 32568938 32568993 -111713496 - Tigger2 DNA MER2_type -2663 55 1 231 39 20 59 chr12 32569487 32569538 -111712951 + (TTTTTA)n Simple_repeat Simple_repeat 2 50 0 27 49 0 0 chr12 32570420 32570461 -111712028 + AT_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr12 32572315 32572341 -111710148 + AT_rich Low_complexity Low_complexity 1 26 0 1230 204 5 5 chr12 32572412 32572633 -111709856 + AluJb SINE Alu 36 256 -56 378 0 0 0 chr12 32572924 32572966 -111709523 + (CA)n Simple_repeat Simple_repeat 2 43 0 549 68 0 0 chr12 32573564 32573638 -111708851 + (TTCC)n Simple_repeat Simple_repeat 2 75 0 1171 84 11 6 chr12 32573649 32573827 -111708662 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1280 138 15 15 chr12 32573836 32574031 -111708458 - AluJb SINE Alu -32 280 86 995 207 6 0 chr12 32574294 32574468 -111708021 + FAM SINE Alu 1 175 0 236 317 58 63 chr12 32574699 32574961 -111707528 + L1ME4a LINE L1 5266 5527 -594 1533 149 126 0 chr12 32574961 32575222 -111707267 - AluJo SINE Alu -2 310 17 236 317 58 63 chr12 32575222 32575322 -111707167 + L1ME4a LINE L1 5527 5626 -495 1437 223 149 34 chr12 32575330 32575767 -111706722 - MLT1F1 LTR MaLR 0 567 71 486 276 53 0 chr12 32575863 32576015 -111706474 + L1ME4a LINE L1 5636 5795 -326 366 303 45 0 chr12 32576070 32576248 -111706241 + L1ME4a LINE L1 5934 6119 -2 1849 164 3 3 chr12 32576462 32576754 -111705735 + AluSx SINE Alu 5 296 -16 2079 98 33 0 chr12 32577500 32577802 -111704687 - AluSq SINE Alu 0 311 1 461 241 3 22 chr12 32578224 32578364 -111704125 + MLT1H LTR MaLR 1 159 -390 850 148 65 24 chr12 32578518 32578687 -111703802 - FRAM SINE Alu 0 40 1 336 197 14 0 chr12 32578912 32578983 -111703506 + L2 LINE L2 3242 3313 0 878 200 47 6 chr12 32579047 32579217 -111703272 + MLT2C1 LTR ERVL 1 177 -220 1746 194 0 0 chr12 32579265 32579553 -111702936 + AluJo SINE Alu 1 288 -24 448 259 95 55 chr12 32579565 32579912 -111702577 + L1MEc LINE L1 1949 2309 -4087 1027 189 52 48 chr12 32579925 32580135 -111702354 + Charlie1a DNA MER1_type 76 289 -2472 2178 127 0 0 chr12 32580135 32580434 -111702055 + AluSx SINE Alu 1 299 -13 1027 189 52 48 chr12 32580434 32580493 -111701996 + Charlie1a DNA MER1_type 289 346 -1109 2147 105 41 0 chr12 32580862 32581157 -111701332 + AluSp SINE Alu 1 307 -6 335 109 0 18 chr12 32581565 32581620 -111700869 + Alu SINE Alu 2 55 -253 1129 140 67 0 chr12 32581624 32581803 -111700686 + AluSg/x SINE Alu 106 296 -14 2084 120 0 23 chr12 32582451 32582751 -111699738 + AluJb SINE Alu 1 293 -19 21 36 0 0 chr12 32582971 32582999 -111699490 + AT_rich Low_complexity Low_complexity 1 28 0 189 231 58 0 chr12 32583142 32583194 -111699295 - MIR SINE MIR -10 252 198 768 296 79 30 chr12 32583227 32583695 -111698794 - LTR16B LTR ERVL 0 464 10 357 222 33 0 chr12 32583705 32583795 -111698694 - MIR SINE MIR -96 166 74 2498 88 0 0 chr12 32583845 32584152 -111698337 - AluSq SINE Alu -6 307 1 4466 154 36 63 chr12 32584447 32585284 -111697205 - L1MB7 LINE L1 -21 6163 5305 2178 107 7 0 chr12 32585284 32585587 -111696902 - AluSx SINE Alu 0 305 1 1934 142 7 20 chr12 32585587 32585889 -111696600 - AluSx SINE Alu -14 298 1 4466 154 36 63 chr12 32585889 32586050 -111696439 - L1MB7 LINE L1 -878 5306 5142 695 150 0 95 chr12 32586050 32586197 -111696292 - FLAM_C SINE Alu 0 133 1 4466 154 36 63 chr12 32586197 32586423 -111696066 - L1MB7 LINE L1 -1042 5142 4967 1905 151 0 33 chr12 32586497 32586802 -111695687 - AluJo SINE Alu -17 295 1 524 127 0 0 chr12 32587574 32587645 -111694844 + AluS SINE Alu 2 72 -241 2036 120 35 0 chr12 32588497 32588780 -111693709 + AluSx SINE Alu 1 293 -19 258 234 0 16 chr12 32588985 32589049 -111693440 - Charlie7 DNA MER1_type -2511 101 39 2106 88 51 0 chr12 32589844 32590118 -111692371 + AluSg SINE Alu 3 290 -20 664 190 0 0 chr12 32590279 32590395 -111692094 + FLAM_C SINE Alu 3 118 -25 180 0 0 0 chr12 32590400 32590420 -111692069 + (GAA)n Simple_repeat Simple_repeat 2 21 0 4920 28 0 0 chr12 32590755 32591326 -111691163 - L1P LINE L1 -1727 4419 3849 4975 40 0 0 chr12 32591326 32591908 -111690581 + L1PA4 LINE L1 5571 6152 -3 1543 122 78 11 chr12 32591931 32592201 -111690288 + L1PA16 LINE L1 5861 6148 -18 321 293 135 23 chr12 32592563 32592778 -111689711 - MIR SINE MIR -15 247 9 666 266 52 22 chr12 32593032 32593261 -111689228 + L1MC4a LINE L1 7190 7425 -383 1186 184 18 0 chr12 32593265 32593482 -111689007 + AluJo SINE Alu 87 307 -5 1005 242 144 35 chr12 32593488 32593968 -111688521 + L1MC4 LINE L1 7507 8038 -4 199 263 97 61 chr12 32594220 32594334 -111688155 - L2 LINE L2 -223 3049 2932 607 262 38 24 chr12 32594424 32594634 -111687855 + LTR33 LTR ERVL 307 519 -2 251 228 96 96 chr12 32594694 32594861 -111687628 - L2 LINE L2 -1211 2103 1937 2263 118 0 3 chr12 32594978 32595291 -111687198 + AluSx SINE Alu 1 312 0 2447 89 3 0 chr12 32595448 32595750 -111686739 + AluSq SINE Alu 1 303 -10 2007 139 3 13 chr12 32596684 32596987 -111685502 - AluSx SINE Alu -12 300 1 298 232 11 74 chr12 32597101 32597196 -111685293 + MLT1E LTR MaLR 8 96 -497 738 214 168 85 chr12 32597271 32597563 -111684926 + MLT1E LTR MaLR 283 594 -1 1725 77 23 0 chr12 32599989 32600209 -111682280 + AluSq SINE Alu 69 293 -20 28 0 0 0 chr12 32600799 32600827 -111681662 + AT_rich Low_complexity Low_complexity 1 28 0 2281 114 0 0 chr12 32600897 32601195 -111681294 + AluSx SINE Alu 1 298 -14 333 0 0 0 chr12 32601432 32601469 -111681020 + (CA)n Simple_repeat Simple_repeat 2 38 0 1506 260 110 68 chr12 32601653 32602682 -111679807 - L1ME LINE L1 -534 5630 4645 2151 113 0 0 chr12 32602682 32602964 -111679525 + AluSx SINE Alu 1 282 -30 1506 260 110 68 chr12 32602964 32602991 -111679498 - L1ME LINE L1 -1519 4645 4621 348 24 0 0 chr12 32602991 32603032 -111679457 + (CA)n Simple_repeat Simple_repeat 2 42 0 1506 260 110 68 chr12 32603032 32603270 -111679219 - L1ME LINE L1 -1543 4621 4394 2047 151 3 0 chr12 32603270 32603568 -111678921 + AluSx SINE Alu 1 299 -13 1506 260 110 68 chr12 32603568 32603956 -111678533 - L1ME LINE L1 -1770 4394 3865 2268 92 7 7 chr12 32603956 32604261 -111678228 + AluSq SINE Alu 1 305 -8 1506 260 110 68 chr12 32604261 32604362 -111678127 - L1ME LINE L1 -2299 3865 3770 700 285 7 0 chr12 32604485 32604657 -111677832 - FRAM SINE Alu 0 173 1 381 303 58 33 chr12 32604686 32604960 -111677529 - L1ME LINE L1 -2693 3453 3173 26 0 0 0 chr12 32605017 32605043 -111677446 + AT_rich Low_complexity Low_complexity 1 26 0 3650 187 81 52 chr12 32605543 32607022 -111675467 + L1MDa LINE L1 33 1783 -4757 1773 136 3 45 chr12 32607379 32607687 -111674802 - AluJo SINE Alu 0 312 18 1457 147 127 12 chr12 32607709 32607994 -111674495 - AluSg SINE Alu 0 310 1 2286 113 3 0 chr12 32608285 32608595 -111673894 - AluSp SINE Alu -2 311 1 302 269 92 31 chr12 32608891 32609021 -111673468 - MIR SINE MIR -105 157 20 2263 91 0 31 chr12 32609058 32609376 -111673113 + AluSx SINE Alu 1 308 -4 1911 167 10 3 chr12 32609795 32610101 -111672388 + AluSx SINE Alu 1 308 -4 246 259 62 12 chr12 32610225 32610306 -111672183 + MIR SINE MIR 65 149 -113 707 224 52 84 chr12 32610508 32610816 -111671673 + MER46C DNA MER2_type 2 299 -39 24 0 0 0 chr12 32611524 32611548 -111670941 + AT_rich Low_complexity Low_complexity 1 24 0 259 319 0 0 chr12 32611897 32611988 -111670501 - MIR SINE MIR -102 160 70 333 304 223 0 chr12 32612295 32612443 -111670046 - MIR SINE MIR -42 220 40 2165 125 0 7 chr12 32613164 32613461 -111669028 + AluSq SINE Alu 1 295 -18 811 149 0 0 chr12 32613480 32613594 -111668895 + FLAM_C SINE Alu 6 119 -24 37 39 0 0 chr12 32613594 32613645 -111668844 + AT_rich Low_complexity Low_complexity 1 51 0 2049 125 0 0 chr12 32613763 32614042 -111668447 - AluJb SINE Alu -33 279 1 1497 172 56 8 chr12 32614163 32614456 -111668033 + AluJb SINE Alu 1 306 0 1139 189 0 0 chr12 32614465 32614640 -111667849 + FAM SINE Alu 1 175 0 24 0 0 0 chr12 32614777 32614801 -111667688 + AT_rich Low_complexity Low_complexity 1 24 0 1321 161 5 22 chr12 32614813 32615036 -111667453 - AluJb SINE Alu -93 219 1 2419 85 0 7 chr12 32615044 32615349 -111667140 - AluSc SINE Alu -6 303 1 2391 78 0 0 chr12 32616897 32617192 -111665297 - AluY SINE Alu -16 295 1 1949 165 64 3 chr12 32617310 32617638 -111664851 - MER7A DNA MER2_type 0 346 1 593 134 35 0 chr12 32619824 32619966 -111662523 + L1MB7 LINE L1 6055 6177 -7 507 325 46 52 chr12 32620069 32620414 -111662075 - LTR59 LTR ERV1 -12 585 243 699 221 24 0 chr12 32621059 32621186 -111661303 - FLAM_C SINE Alu -12 131 2 471 202 43 0 chr12 32621293 32621387 -111661102 + U13 snRNA snRNA 1 98 -6 370 267 19 19 chr12 32621469 32621574 -111660915 - HERV9 LTR ERV1 -500 4454 4350 924 129 0 7 chr12 32621575 32621714 -111660775 + AluJb SINE Alu 163 300 -12 383 242 39 84 chr12 32622684 32622862 -111659627 - HERV9 LTR ERV1 -1779 2868 2699 2398 89 3 0 chr12 32623273 32623575 -111658914 - AluSx SINE Alu -9 303 1 250 209 45 15 chr12 32624559 32624626 -111657863 - HERV9 LTR ERV1 -3158 4598 4530 286 146 0 0 chr12 32624682 32624723 -111657766 + AluJb SINE Alu 1 41 -261 299 311 33 11 chr12 32624742 32624832 -111657657 - HERV9 LTR ERV1 -4161 2640 2549 1600 142 4 0 chr12 32624897 32625136 -111657353 + AluJb SINE Alu 48 287 -25 1716 145 41 4 chr12 32625547 32625816 -111656673 - AluSx SINE Alu -33 279 1 497 294 33 13 chr12 32626255 32626408 -111656081 - HERV9 LTR ERV1 -4147 500 345 2308 123 0 0 chr12 32626422 32626730 -111655759 + AluSx SINE Alu 1 308 -4 279 227 49 98 chr12 32626738 32626901 -111655588 - HERV9 LTR ERV1 -4949 3450 3296 2302 86 7 7 chr12 32627241 32627543 -111654946 - AluSp SINE Alu -11 302 1 1915 107 15 0 chr12 32628447 32628709 -111653780 - AluSg SINE Alu -10 300 35 343 255 0 2 chr12 32629413 32629501 -111652988 - L1MC4 LINE L1 -490 7318 7233 940 245 137 35 chr12 32629606 32629933 -111652556 - L1ME3A LINE L1 -110 6060 5768 210 37 0 0 chr12 32629933 32629960 -111652529 + (TG)n Simple_repeat Simple_repeat 2 28 0 940 245 137 35 chr12 32629960 32630604 -111651885 - L1ME3A LINE L1 -402 5768 5191 2292 69 7 14 chr12 32630604 32630893 -111651596 - AluSq SINE Alu -16 297 11 940 245 137 35 chr12 32630893 32631170 -111651319 - L1ME3A LINE L1 -979 5191 4595 2359 61 0 20 chr12 32631212 32631531 -111650958 - AluSq SINE Alu 0 313 1 2309 71 3 7 chr12 32631820 32632116 -111650373 + AluY SINE Alu 1 295 -16 351 310 139 31 chr12 32632632 32632969 -111649520 - LTR34 LTR ERV1 -64 584 228 2108 123 0 13 chr12 32633460 32633770 -111648719 + AluSq SINE Alu 1 306 -7 181 195 0 24 chr12 32635265 32635306 -111647183 - MIR SINE MIR -142 120 81 252 224 30 0 chr12 32636764 32636823 -111645666 + MIR SINE MIR 88 151 -111 2093 98 11 3 chr12 32636823 32637108 -111645381 + AluSq SINE Alu 1 287 -26 185 301 217 26 chr12 32637337 32637682 -111644807 + L2 LINE L2 2238 2648 -666 183 191 302 0 chr12 32639046 32639109 -111643380 + MIR SINE MIR 117 198 -64 197 254 90 30 chr12 32639136 32639203 -111643286 - MIR SINE MIR -87 175 105 27 87 0 0 chr12 32641738 32641807 -111640682 + GC_rich Low_complexity Low_complexity 1 69 0 22 35 0 0 chr12 32642183 32642212 -111640277 + GC_rich Low_complexity Low_complexity 1 29 0 1326 101 10 15 chr12 32645128 32645327 -111637162 + AluSg/x SINE Alu 112 309 -1 310 321 12 24 chr12 32645345 32645429 -111637060 + L2 LINE L2 3144 3226 -46 762 181 0 23 chr12 32645501 32645634 -111636855 + AluJo SINE Alu 1 130 -172 1735 108 24 138 chr12 32645637 32645978 -111636511 + AluYb8 SINE Alu 2 303 -5 197 33 33 0 chr12 32645978 32646008 -111636481 + (TA)n Simple_repeat Simple_repeat 1 31 0 778 261 0 7 chr12 32646013 32646166 -111636323 + AluJo SINE Alu 137 288 -14 2069 112 3 7 chr12 32646176 32646482 -111636007 + AluSp SINE Alu 1 305 0 29 0 0 0 chr12 32646482 32646511 -111635978 + AT_rich Low_complexity Low_complexity 1 29 0 2384 103 0 3 chr12 32646846 32647156 -111635333 + AluSg SINE Alu 1 309 -1 2424 84 0 7 chr12 32647299 32647595 -111634894 + AluSg SINE Alu 1 294 -16 26 30 0 0 chr12 32647800 32647833 -111634656 + AT_rich Low_complexity Low_complexity 1 33 0 2220 92 3 3 chr12 32648166 32648482 -111634007 - AluSp SINE Alu 0 316 1 206 240 20 0 chr12 32648611 32648661 -111633828 - L2 LINE L2 -1 3271 3221 2191 92 0 24 chr12 32649348 32649677 -111632812 - AluSq SINE Alu 0 322 1 308 293 162 20 chr12 32649725 32649923 -111632566 + L3 LINE CR1 1099 1324 -253 194 167 0 0 chr12 32650298 32650334 -111632155 - L2 LINE L2 -254 3059 3024 939 207 6 0 chr12 32650714 32650949 -111631540 + FRAM SINE Alu 1 236 0 1943 153 0 10 chr12 32651162 32651456 -111631033 - AluSx SINE Alu -21 291 1 293 304 223 0 chr12 32652177 32652325 -111630164 + MIR SINE MIR 40 220 -42 235 319 0 0 chr12 32652632 32652723 -111629766 + MIR SINE MIR 70 160 -102 24 0 0 0 chr12 32653072 32653096 -111629393 + AT_rich Low_complexity Low_complexity 1 24 0 690 224 52 84 chr12 32653804 32654112 -111628377 - MER46C DNA MER2_type -39 299 2 221 259 62 12 chr12 32654314 32654395 -111628094 - MIR SINE MIR -113 149 65 1921 163 10 3 chr12 32654519 32654825 -111627664 - AluJb SINE Alu -4 308 1 2284 91 0 31 chr12 32655244 32655562 -111626927 - AluSx SINE Alu -4 308 1 261 269 92 31 chr12 32655599 32655729 -111626760 + MIR SINE MIR 20 157 -105 2302 113 3 0 chr12 32656025 32656335 -111626154 + AluSp SINE Alu 1 311 -2 1471 147 127 12 chr12 32656626 32656911 -111625578 + AluSg SINE Alu 1 310 0 1787 136 3 45 chr12 32656932 32657240 -111625249 + AluJo SINE Alu 18 312 0 2600 175 88 31 chr12 32657597 32658311 -111624178 - L1MDa LINE L1 -4757 1783 1029 1517 172 56 8 chr12 32658535 32658828 -111623661 + AluJb SINE Alu 1 306 0 1074 189 0 0 chr12 32658837 32659012 -111623477 + FAM SINE Alu 1 175 0 1051 190 9 32 chr12 32659190 32659406 -111623083 - AluJb SINE Alu -101 211 1 2352 95 0 7 chr12 32659414 32659719 -111622770 - AluSc SINE Alu -6 303 1 1176 144 0 0 chr12 32660372 32660545 -111621944 + AluSg/x SINE Alu 139 311 -1 2079 137 7 0 chr12 32660552 32660845 -111621644 + AluSx SINE Alu 1 295 -17 2253 126 0 0 chr12 32660848 32661158 -111621331 + AluSx SINE Alu 1 310 -2 1085 90 0 0 chr12 32661251 32661384 -111621105 + AluSg SINE Alu 2 134 -176 2098 85 7 41 chr12 32661385 32661526 -111620963 + AluSg SINE Alu 1 128 -182 2378 67 0 41 chr12 32661526 32661842 -111620647 + AluY SINE Alu 1 303 -8 2098 85 7 41 chr12 32661842 32661993 -111620496 + AluSg SINE Alu 128 283 -27 2283 101 0 0 chr12 32662331 32662628 -111619861 - AluSx SINE Alu -14 298 2 378 304 30 0 chr12 32662712 32662847 -111619642 - MIR SINE MIR -56 206 68 2225 108 6 19 chr12 32664419 32664734 -111617755 + AluSx SINE Alu 1 311 -1 2242 95 7 3 chr12 32666713 32667009 -111615480 + AluSx SINE Alu 1 297 -15 1602 92 60 0 chr12 32667526 32667743 -111614746 + AluSq SINE Alu 67 296 -17 277 140 60 0 chr12 32667861 32667911 -111614578 + Alu SINE Alu 241 293 -9 938 207 6 0 chr12 32668123 32668358 -111614131 - FRAM SINE Alu 0 236 1 194 167 0 0 chr12 32668738 32668774 -111613715 + L2 LINE L2 3024 3059 -254 319 278 150 22 chr12 32669167 32669347 -111613142 - L3 LINE CR1 -276 1301 1099 2192 92 0 24 chr12 32669395 32669724 -111612765 + AluSq SINE Alu 1 322 0 206 240 20 0 chr12 32670412 32670462 -111612027 + L2 LINE L2 3221 3271 -1 224 335 149 21 chr12 32670579 32670591 -111611898 - MIR SINE MIR 0 262 253 2322 96 3 3 chr12 32670591 32670894 -111611595 + AluSp SINE Alu 1 303 -10 224 335 149 21 chr12 32670894 32671069 -111611420 - MIR SINE MIR -9 253 51 200 180 60 0 chr12 32671933 32671983 -111610506 + (CGTG)n Simple_repeat Simple_repeat 4 56 0 1533 260 72 32 chr12 32672395 32672928 -111609561 - MLT1F1 LTR MaLR -1 566 1 2180 105 0 40 chr12 32673208 32673533 -111608956 + AluSx SINE Alu 1 312 0 350 177 63 13 chr12 32673729 32673808 -111608681 + L2 LINE L2 3184 3266 -47 316 256 126 63 chr12 32673825 32674032 -111608457 - L2 LINE L2 -850 2464 2245 2381 93 0 0 chr12 32674383 32674684 -111607805 - AluSg SINE Alu -9 301 1 25 0 0 0 chr12 32674684 32674709 -111607780 + AT_rich Low_complexity Low_complexity 1 25 0 2284 87 14 0 chr12 32674904 32675193 -111607296 + AluSg SINE Alu 1 293 -17 2059 141 3 7 chr12 32675207 32675513 -111606976 + AluSx SINE Alu 1 305 -7 246 207 35 17 chr12 32675588 32675646 -111606843 - L2 LINE L2 -880 2434 2376 2119 102 7 3 chr12 32675646 32675952 -111606537 + AluSq SINE Alu 1 307 0 181 180 40 0 chr12 32676088 32676138 -111606351 + (TA)n Simple_repeat Simple_repeat 2 53 0 1593 170 13 26 chr12 32676191 32676503 -111605986 - AluJb SINE Alu -4 308 1 486 89 196 0 chr12 32676510 32676678 -111605811 - AluSp SINE Alu -16 297 97 2190 108 0 3 chr12 32676963 32677251 -111605238 + AluSx SINE Alu 21 307 -5 1351 174 5 0 chr12 32677293 32677511 -111604978 + AluJo SINE Alu 84 302 -10 277 201 188 56 chr12 32677511 32677548 -111604941 - MLT1A1 LTR MaLR -32 333 302 2180 109 3 0 chr12 32677548 32677855 -111604634 + AluSq SINE Alu 1 308 0 277 201 188 56 chr12 32677855 32677959 -111604530 - MLT1A1 LTR MaLR -63 302 171 292 196 107 62 chr12 32678414 32678425 -111604064 + L1M4 LINE L1 2461 2470 -3676 2251 88 0 0 chr12 32678425 32678719 -111603770 + AluY SINE Alu 1 294 -17 292 196 107 62 chr12 32678719 32678819 -111603670 + L1M4 LINE L1 2470 2577 -3569 2332 101 3 0 chr12 32678828 32679126 -111603363 + AluSg SINE Alu 1 299 -11 300 185 0 0 chr12 32679135 32679189 -111603300 + L1M4 LINE L1 2667 2720 -3426 1777 135 13 51 chr12 32679195 32679506 -111602983 + AluSx SINE Alu 1 299 -13 1761 95 52 75 chr12 32679889 32680194 -111602295 + AluSx SINE Alu 1 298 -14 2086 93 7 11 chr12 32681115 32681384 -111601105 + AluSx SINE Alu 38 305 -7 257 217 67 0 chr12 32681614 32681674 -111600815 + MER116 DNA Mariner 1 64 -16 2399 54 7 0 chr12 32681676 32681989 -111600500 + AluSp SINE Alu 1 315 0 753 160 7 35 chr12 32682072 32682216 -111600273 - FLAM_C SINE Alu 0 143 4 302 256 17 43 chr12 32682364 32682481 -111600008 + L2 LINE L2 2183 2296 -1018 1893 162 0 3 chr12 32682593 32682889 -111599600 - AluJb SINE Alu -17 295 1 450 193 37 176 chr12 32682890 32683001 -111599488 + LTR41 LTR ERVL 506 631 -164 2199 105 0 19 chr12 32683001 32683316 -111599173 - AluSc SINE Alu 0 309 1 450 193 37 176 chr12 32683316 32683429 -111599060 + LTR41 LTR ERVL 631 758 -37 1807 172 45 55 chr12 32683429 32683536 -111598953 + MLT2D LTR ERVL 1 108 -306 2125 104 0 0 chr12 32683536 32683815 -111598674 - AluSg SINE Alu -9 301 23 1807 172 45 55 chr12 32683815 32684125 -111598364 + MLT2D LTR ERVL 108 414 0 2320 85 7 0 chr12 32684131 32684425 -111598064 - AluSg SINE Alu -14 296 1 450 193 37 176 chr12 32684425 32684505 -111597984 + LTR41 LTR ERVL 763 795 0 361 237 8 92 chr12 32684512 32684643 -111597846 + L2 LINE L2 2260 2379 -935 2224 119 0 6 chr12 32684644 32684956 -111597533 - AluSx SINE Alu 0 312 3 882 111 95 265 chr12 32685110 32685469 -111597020 + AluJo SINE Alu 2 299 -3 2576 65 0 3 chr12 32685469 32685776 -111596713 + AluY SINE Alu 1 306 -5 514 78 0 0 chr12 32685968 32686032 -111596457 - AluJ SINE Alu -144 168 105 2038 111 9 49 chr12 32686664 32686988 -111595501 - AluJb SINE Alu -1 311 1 728 145 8 8 chr12 32687215 32687332 -111595157 - AluJ SINE Alu -194 118 2 453 152 0 0 chr12 32687332 32687398 -111595091 + MLT1C LTR MaLR 402 467 0 1053 126 46 23 chr12 32687683 32687858 -111594631 + AluSp SINE Alu 122 300 -13 2413 106 3 0 chr12 32688086 32688398 -111594091 + AluSq SINE Alu 1 313 0 1734 186 0 31 chr12 32688513 32688831 -111593658 - AluJb SINE Alu -4 308 1 2055 158 0 0 chr12 32688840 32689138 -111593351 - AluSx SINE Alu -14 298 1 1920 148 3 13 chr12 32689441 32689739 -111592750 - AluSg SINE Alu -15 295 1 666 185 0 8 chr12 32689900 32690019 -111592470 + FLAM_C SINE Alu 1 118 -25 2294 104 3 0 chr12 32690216 32690515 -111591974 + AluSg1 SINE Alu 1 300 -9 234 308 92 21 chr12 32691081 32691237 -111591252 + MER5A DNA MER1_type 8 184 -5 2025 153 0 0 chr12 32691306 32691600 -111590889 + AluJb SINE Alu 5 298 -14 2236 80 6 22 chr12 32691601 32691915 -111590574 + AluY SINE Alu 1 309 -2 1991 97 4 0 chr12 32692124 32692381 -111590108 + AluSq SINE Alu 1 258 -55 290 297 232 14 chr12 32692564 32692840 -111589649 - L2 LINE L2 -688 2626 2291 1873 169 3 0 chr12 32692933 32693229 -111589260 + AluJb SINE Alu 1 297 -15 910 184 81 135 chr12 32693782 32694130 -111588359 - LTR34 LTR ERV1 -370 329 1 428 221 0 1 chr12 32694162 32694246 -111588243 - L1MC/D LINE L1 -599 5567 5486 2127 98 0 54 chr12 32694246 32694563 -111587926 - AluSc SINE Alu -9 300 1 379 319 36 0 chr12 32694593 32694731 -111587758 + PRIMA41-int LTR ERV1 6321 6463 -1293 2291 94 3 0 chr12 32695340 32695627 -111586862 + AluSx SINE Alu 1 288 -24 1079 99 81 0 chr12 32697292 32697453 -111585036 - AluSp SINE Alu -12 301 128 28 29 0 0 chr12 32697552 32697587 -111584902 + GC_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr12 32697707 32697742 -111584747 + GC_rich Low_complexity Low_complexity 1 35 0 28 79 0 0 chr12 32697805 32697868 -111584621 + GC_rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chr12 32697941 32697965 -111584524 + GC_rich Low_complexity Low_complexity 1 24 0 545 272 47 27 chr12 32698329 32698513 -111583976 - MLT1K LTR MaLR -366 222 57 2280 105 0 0 chr12 32698610 32698904 -111583585 + AluSx SINE Alu 1 294 -18 2205 130 55 0 chr12 32699005 32699350 -111583139 - THE1B LTR MaLR 0 364 1 248 208 0 56 chr12 32699613 32699685 -111582804 + MIR3 SINE MIR 133 200 -8 2373 89 3 0 chr12 32700024 32700328 -111582161 + AluSq SINE Alu 6 310 -3 2230 94 3 29 chr12 32700835 32701144 -111581345 - AluSq SINE Alu -12 301 1 453 123 0 0 chr12 32701403 32701468 -111581021 + MER92B LTR ERV1 1 65 -571 2040 52 0 12 chr12 32701471 32701719 -111580770 + AluY SINE Alu 57 301 -10 2234 131 0 3 chr12 32701730 32702043 -111580446 + AluSx SINE Alu 1 312 0 206 204 0 19 chr12 32702043 32702097 -111580392 + GA-rich Low_complexity Low_complexity 4 56 0 2157 97 7 0 chr12 32702262 32702541 -111579948 + AluSx SINE Alu 1 281 -31 417 39 0 0 chr12 32702541 32702592 -111579897 + (CCAA)n Simple_repeat Simple_repeat 1 51 0 1678 152 65 7 chr12 32703020 32703187 -111579302 - AluJb SINE Alu -10 302 111 338 0 24 0 chr12 32703187 32703229 -111579260 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1678 152 65 7 chr12 32703229 32703337 -111579152 - AluJb SINE Alu -201 111 11 2237 100 3 7 chr12 32703343 32703643 -111578846 - AluSg SINE Alu -9 301 3 788 164 7 14 chr12 32703754 32703894 -111578595 + FLAM_C SINE Alu 1 139 -4 485 223 7 4 chr12 32704014 32704142 -111578347 + MSTC LTR MaLR 220 379 -48 2099 102 7 14 chr12 32704147 32704430 -111578059 + AluSx SINE Alu 1 281 -31 1042 174 30 52 chr12 32704470 32704700 -111577789 + AluJb SINE Alu 85 309 -3 192 125 0 0 chr12 32704710 32704742 -111577747 + (GGAAA)n Simple_repeat Simple_repeat 3 34 0 1653 163 52 28 chr12 32704842 32705131 -111577358 - AluJb SINE Alu -16 296 1 2267 99 0 10 chr12 32705335 32705639 -111576850 - AluSx SINE Alu -11 301 1 1560 160 4 0 chr12 32705653 32705916 -111576573 + L1MA6 LINE L1 6037 6300 0 434 132 44 0 chr12 32705940 32706008 -111576481 + MLT1A2 LTR MaLR 1 71 -303 2239 114 3 0 chr12 32706011 32706309 -111576180 - AluSq SINE Alu -14 299 1 2403 90 40 3 chr12 32706309 32706655 -111575834 - L1PA11 LINE L1 -2 6172 5814 780 169 0 0 chr12 32706655 32706785 -111575704 - FRAM SINE Alu -9 167 38 2302 97 13 3 chr12 32707144 32707453 -111575036 + AluSx SINE Alu 1 312 0 1197 249 61 32 chr12 32707659 32708069 -111574420 - MER90 LTR ERV1 -87 527 106 527 267 35 53 chr12 32708070 32708355 -111574134 - MER34B LTR ERV1 0 565 286 2955 93 42 9 chr12 32708355 32708739 -111573750 + MLT2A1 LTR ERVL 1 402 -42 672 99 0 0 chr12 32708739 32708850 -111573639 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 2955 93 42 9 chr12 32708850 32708895 -111573594 + MLT2A1 LTR ERVL 402 444 0 355 228 105 18 chr12 32708990 32709104 -111573385 - MER34B LTR ERV1 -441 124 1 751 293 35 4 chr12 32709244 32709476 -111573013 + MIR SINE MIR 6 244 -18 2018 209 87 27 chr12 32709654 32710204 -111572285 - MER92B LTR ERV1 0 636 54 2161 125 6 10 chr12 32710204 32710550 -111571939 - AluSx SINE Alu 0 345 1 1154 180 5 14 chr12 32711043 32711254 -111571235 + AluJb SINE Alu 77 285 -27 810 129 0 43 chr12 32711253 32711393 -111571096 - AluJo SINE Alu -178 134 1 * 1012 155 13 0 chr12 32711397 32711552 -111570937 - FRAM SINE Alu -20 156 1 1633 167 53 11 chr12 32711606 32711888 -111570601 - AluJb SINE Alu -18 294 1 842 175 136 6 chr12 32712172 32712349 -111570140 + MLT1D LTR MaLR 306 505 0 25 0 0 0 chr12 32712832 32712857 -111569632 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr12 32712950 32712970 -111569519 + (TG)n Simple_repeat Simple_repeat 1 20 0 1971 147 3 0 chr12 32712994 32713280 -111569209 - AluSq SINE Alu -26 287 1 2163 95 50 0 chr12 32714166 32714449 -111568040 - AluSq SINE Alu -16 297 1 400 216 95 60 chr12 32715186 32715302 -111567187 + MIR SINE MIR 35 154 -108 1885 164 7 3 chr12 32715327 32715619 -111566870 + AluSx SINE Alu 1 293 -19 1809 138 6 58 chr12 32715619 32715931 -111566558 + AluJb SINE Alu 5 300 -12 255 208 0 0 chr12 32716055 32716103 -111566386 - AluSc SINE Alu -3 296 249 477 239 61 6 chr12 32716109 32716272 -111566217 + AluSq SINE Alu 95 266 -47 628 339 111 36 chr12 32716482 32716707 -111565782 - L2 LINE L2 -31 3282 3075 1866 159 21 7 chr12 32716707 32716996 -111565493 - AluJb SINE Alu -19 293 1 628 339 111 36 chr12 32716996 32717602 -111564887 - L2 LINE L2 -238 3075 2403 1978 110 24 14 chr12 32717646 32717985 -111564504 + AluSx SINE Alu 1 312 0 1862 152 7 7 chr12 32717997 32718293 -111564196 + AluJb SINE Alu 1 296 -16 1404 91 0 122 chr12 32718363 32718414 -111564075 + AluSg/x SINE Alu 85 141 -169 2268 120 0 0 chr12 32718414 32718715 -111563774 + AluSx SINE Alu 1 301 -11 1404 91 0 122 chr12 32718715 32718917 -111563572 + AluSg/x SINE Alu 141 307 -3 805 148 78 0 chr12 32718920 32719062 -111563427 + FRAM SINE Alu 1 153 -23 298 285 121 14 chr12 32719143 32719350 -111563139 - L2 LINE L2 -1340 1974 1746 2259 85 44 0 chr12 32719617 32719910 -111562579 - AluSx SINE Alu -6 306 1 2417 95 0 0 chr12 32719960 32720265 -111562224 - AluY SINE Alu -6 305 1 239 252 122 84 chr12 32720805 32720835 -111561654 + MER91C DNA MER1_type 4 31 -109 2483 76 3 0 chr12 32720835 32721136 -111561353 - AluSg SINE Alu -8 302 1 239 252 122 84 chr12 32721136 32721236 -111561253 + MER91C DNA MER1_type 31 139 -1 1439 121 10 0 chr12 32721551 32721750 -111560739 - AluSq SINE Alu -17 296 96 2439 85 3 0 chr12 32723799 32724105 -111558384 - AluSq SINE Alu -6 307 1 241 125 172 0 chr12 32724263 32724327 -111558162 - L1ME4a LINE L1 0 6121 6047 2241 119 0 3 chr12 32724532 32724843 -111557646 - AluSq SINE Alu -3 310 1 1972 145 13 0 chr12 32724901 32725205 -111557284 + AluSg SINE Alu 1 308 -2 2376 55 13 7 chr12 32725545 32725854 -111556635 + AluY SINE Alu 1 311 0 377 181 103 35 chr12 32725924 32726040 -111556449 - MIR SINE MIR -42 220 97 690 193 22 30 chr12 32726636 32726771 -111555718 + MER94 DNA DNA 1 134 0 182 245 0 20 chr12 32726790 32726839 -111555650 + MIR SINE MIR 87 134 -74 975 172 11 17 chr12 32726839 32727019 -111555470 - FRAM SINE Alu -2 174 1 2265 112 0 0 chr12 32727027 32727321 -111555168 - AluSx SINE Alu -18 294 1 1342 175 29 71 chr12 32727324 32727633 -111554856 - AluJb SINE Alu -16 296 1 2434 72 7 3 chr12 32728755 32729059 -111553430 - AluSp SINE Alu -8 305 1 382 314 22 7 chr12 32729136 32729273 -111553216 - MIR SINE MIR -113 149 11 2109 149 36 0 chr12 32729334 32729669 -111552820 - L1PA16 LINE L1 -23 6143 5797 485 272 88 41 chr12 32730040 32730460 -111552029 - L1PA16 LINE L1 -438 5725 5255 1995 155 20 0 chr12 32731236 32731539 -111550950 + AluJb SINE Alu 1 309 -3 709 62 134 0 chr12 32731632 32731729 -111550760 + MER83 LTR ERV1 1 110 -338 * 1958 127 66 91 chr12 32731728 32732051 -111550438 + MER83 LTR ERV1 50 362 -86 2631 59 0 0 chr12 32732051 32732357 -111550132 + AluY SINE Alu 1 306 -5 1958 127 66 91 chr12 32732357 32732442 -111550047 + MER83 LTR ERV1 362 448 0 220 229 0 0 chr12 32733190 32733238 -111549251 + A-rich Low_complexity Low_complexity 4 51 0 317 203 0 16 chr12 32733274 32733338 -111549151 - MER112 DNA MER1_type -189 71 9 4619 56 40 20 chr12 32733830 32734843 -111547646 + MER11A LTR ERVK 1 1266 0 1961 151 10 7 chr12 32734916 32735214 -111547275 + AluJb SINE Alu 1 299 -13 2108 123 0 33 chr12 32735557 32735857 -111546632 + AluJb SINE Alu 1 290 -22 315 0 0 0 chr12 32736572 32736607 -111545882 + (CA)n Simple_repeat Simple_repeat 2 36 0 254 346 9 19 chr12 32736821 32736928 -111545561 - L1ME LINE L1 -533 5588 5483 1662 119 131 8 chr12 32736934 32737194 -111545295 - AluSg1 SINE Alu -17 292 1 205 183 33 17 chr12 32737201 32737261 -111545228 + T-rich Low_complexity Low_complexity 4 64 0 421 301 27 0 chr12 32737454 32737600 -111544889 - L1ME LINE L1 -897 5462 5313 1273 151 0 0 chr12 32737607 32737825 -111544664 - L1MA4 LINE L1 -11 6289 6072 2480 191 60 35 chr12 32738630 32739195 -111543294 - L1P LINE L1 -5557 589 11 880 289 29 7 chr12 32739483 32739791 -111542698 + L1ME LINE L1 5485 5799 -371 206 143 41 20 chr12 32739851 32739900 -111542589 + (TA)n Simple_repeat Simple_repeat 2 51 0 2403 185 25 34 chr12 32739982 32740149 -111542340 - L1MB5 LINE L1 -1 6173 6006 2276 108 3 0 chr12 32740149 32740446 -111542043 + AluSq SINE Alu 2 299 -14 2403 185 25 34 chr12 32740446 32740830 -111541659 - L1MB5 LINE L1 -168 6006 5627 524 202 11 0 chr12 32740844 32740933 -111541556 + AluJ/FLAM SINE Alu 2 91 -221 345 158 118 53 chr12 32740935 32741011 -111541478 + HERVL40 LTR ERVL 1067 1147 -4383 3782 261 63 26 chr12 32741542 32742020 -111540469 + HERVL40 LTR ERVL 3181 3640 -1890 414 0 0 0 chr12 32742020 32742066 -111540423 + (CA)n Simple_repeat Simple_repeat 2 47 0 3782 261 63 26 chr12 32742066 32742686 -111539803 + HERVL40 LTR ERVL 3640 4319 -1211 354 191 0 128 chr12 32742695 32742765 -111539724 + MER58A DNA MER1_type 1 58 -283 2202 117 0 3 chr12 32742765 32743064 -111539425 + AluSx SINE Alu 2 299 -13 354 191 0 128 chr12 32743064 32743087 -111539402 + MER58A DNA MER1_type 58 82 -142 234 62 0 0 chr12 32743095 32743127 -111539362 + (CA)n Simple_repeat Simple_repeat 2 33 0 871 262 62 51 chr12 32743127 32743261 -111539228 + HERVL40 LTR ERVL 3675 3818 -1712 1784 50 0 0 chr12 32743261 32743463 -111539026 - AluY SINE Alu -73 238 37 871 262 62 51 chr12 32743463 32743575 -111538914 + HERVL40 LTR ERVL 3818 3927 -1603 681 222 22 0 chr12 32743580 32743715 -111538774 + MER58A DNA MER1_type 87 224 0 555 259 7 14 chr12 32743718 32743857 -111538632 + HERVL40 LTR ERVL 4328 4465 -1065 2230 166 60 114 chr12 32743924 32744504 -111537985 - MER44D DNA MER2_type -1 604 1 523 285 47 99 chr12 32744771 32745174 -111537315 - MER110 LTR ERV1 -4 487 106 2114 119 0 11 chr12 32745571 32745888 -111536601 - AluSx SINE Alu 0 314 1 2266 94 3 10 chr12 32746047 32746346 -111536143 - AluSp SINE Alu -12 301 5 284 253 51 0 chr12 32746696 32746775 -111535714 - LTR37B LTR ERV1 -385 83 1 237 65 0 0 chr12 32746855 32746886 -111535603 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 843 167 7 0 chr12 32746906 32747044 -111535445 - AluJo SINE Alu -173 139 1 1767 107 41 24 chr12 32747622 32747913 -111534576 - AluSx SINE Alu -14 298 3 715 112 0 0 chr12 32747914 32748012 -111534477 - AluJo SINE Alu -176 136 39 894 228 31 24 chr12 32748190 32748444 -111534045 - MIR SINE MIR 0 262 7 295 296 15 45 chr12 32749419 32749551 -111532938 - MIR SINE MIR -14 248 121 229 316 0 0 chr12 32749813 32749892 -111532597 - L2 LINE L2 -3 3269 3191 253 287 52 9 chr12 32750092 32750207 -111532282 + MER65A LTR ERV1 3 122 -323 2269 78 13 32 chr12 32750207 32750515 -111531974 + AluSg SINE Alu 1 302 -8 1268 232 68 0 chr12 32750954 32751234 -111531255 - MER58B DNA MER1_type -26 315 17 462 167 167 37 chr12 32751261 32751277 -111531212 - MER45 DNA AcHobo -918 122 109 2124 92 21 7 chr12 32751277 32751560 -111530929 + AluSq SINE Alu 13 299 -14 462 167 167 37 chr12 32751560 32751651 -111530838 - MER45 DNA AcHobo -931 109 1 2049 87 0 30 chr12 32752235 32752500 -111529989 - AluSg SINE Alu -53 257 1 21 36 0 0 chr12 32752596 32752624 -111529865 + AT_rich Low_complexity Low_complexity 1 28 0 764 300 94 47 chr12 32752959 32753210 -111529279 - LTR33 LTR ERVL 0 521 283 4504 86 60 24 chr12 32753210 32753373 -111529116 - LTR8 LTR ERV1 0 691 535 2266 106 17 0 chr12 32753373 32753675 -111528814 - AluSx SINE Alu -5 307 1 4504 86 60 24 chr12 32753675 32754178 -111528311 - LTR8 LTR ERV1 -156 535 1 764 300 94 47 chr12 32754178 32754393 -111528096 - LTR33 LTR ERVL -238 283 33 2206 105 10 10 chr12 32754509 32754814 -111527675 - AluSx SINE Alu -7 305 1 243 146 0 0 chr12 32755049 32755090 -111527399 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 3756 94 6 6 chr12 32755104 32755615 -111526874 - MER9 LTR ERVK 0 511 1 931 280 121 61 chr12 32755862 32756214 -111526275 - L1MEd LINE L1 -5381 738 408 2348 98 0 22 chr12 32756214 32756532 -111525957 - AluY SINE Alu 0 311 1 931 280 121 61 chr12 32756532 32756562 -111525927 - L1MEd LINE L1 -5711 408 381 2492 91 0 0 chr12 32756562 32756870 -111525619 - AluSx SINE Alu -4 308 1 931 280 121 61 chr12 32756870 32756975 -111525514 - L1MEd LINE L1 -5738 381 221 231 167 42 0 chr12 32756988 32757036 -111525453 - L1MEd LINE L1 -6042 77 28 300 111 0 0 chr12 32757635 32757689 -111524800 + (TCCCC)n Simple_repeat Simple_repeat 5 58 0 669 196 0 43 chr12 32757691 32757829 -111524660 - FLAM_C SINE Alu 0 133 2 2426 85 0 3 chr12 32757863 32758168 -111524321 + AluSq SINE Alu 1 304 -9 2106 117 0 23 chr12 32758184 32758491 -111523998 + AluSx SINE Alu 11 310 -2 22 0 0 0 chr12 32758491 32758513 -111523976 + AT_rich Low_complexity Low_complexity 1 22 0 2082 176 31 5 chr12 32760282 32760673 -111521816 + MER57A LTR ERV1 3 403 0 872 121 0 0 chr12 32760739 32760855 -111521634 - AluSq/x SINE Alu -196 116 1 2208 98 7 0 chr12 32760891 32761178 -111521311 - AluSq SINE Alu -24 289 1 2325 86 0 0 chr12 32761320 32761610 -111520879 + AluY SINE Alu 1 290 -21 226 0 0 56 chr12 32761614 32761650 -111520839 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 1659 157 39 25 chr12 32761654 32761935 -111520554 + AluJo SINE Alu 1 285 -27 414 0 0 0 chr12 32761936 32761982 -111520507 + (AATAG)n Simple_repeat Simple_repeat 1 46 0 21 0 0 0 chr12 32761993 32762014 -111520475 + AT_rich Low_complexity Low_complexity 1 21 0 2073 133 0 10 chr12 32762029 32762338 -111520151 + AluSx SINE Alu 1 306 -6 2338 102 0 0 chr12 32762339 32762633 -111519856 + AluSx SINE Alu 1 294 -18 2496 76 0 10 chr12 32762633 32762946 -111519543 + AluY SINE Alu 1 311 0 633 197 98 0 chr12 32762969 32763091 -111519398 + FRAM SINE Alu 3 136 -40 186 71 0 0 chr12 32763218 32763246 -111519243 + (CA)n Simple_repeat Simple_repeat 2 29 0 2404 167 29 29 chr12 32763321 32763418 -111519071 - MER66A LTR ERV1 -3 475 379 1950 138 3 0 chr12 32763418 32763725 -111518764 - AluSx SINE Alu 0 308 1 2404 167 29 29 chr12 32763725 32764075 -111518414 - MER66A LTR ERV1 -98 380 27 221 348 0 0 chr12 32764450 32764519 -111517970 + MIR SINE MIR 86 154 -108 370 274 0 10 chr12 32764524 32764626 -111517863 - MER46C DNA MER2_type -14 324 224 543 259 60 15 chr12 32764677 32764878 -111517611 + L2 LINE L2 3104 3313 0 225 252 37 65 chr12 32764886 32764993 -111517496 + L2 LINE L2 2462 2565 -749 2261 118 0 0 chr12 32765202 32765506 -111516983 + AluSx SINE Alu 9 312 0 270 233 14 0 chr12 32766007 32766080 -111516409 - MIR SINE MIR -61 147 74 268 321 28 0 chr12 32766115 32766221 -111516268 - MIR SINE MIR -1 261 153 322 258 11 22 chr12 32766222 32766311 -111516178 + MER46C DNA MER2_type 2 89 -249 46 16 0 16 chr12 32766393 32766408 -111516081 + AT_rich Low_complexity Low_complexity 1 15 -48 2473 62 0 7 chr12 32766408 32766729 -111515760 - AluSx SINE Alu 0 312 1 46 16 0 16 chr12 32766729 32766777 -111515712 + AT_rich Low_complexity Low_complexity 15 63 0 1893 238 89 26 chr12 32766828 32767336 -111515153 - MLT1E LTR MaLR -53 540 1 1186 179 9 22 chr12 32767426 32767650 -111514839 + AluJb SINE Alu 85 305 -7 221 222 16 0 chr12 32767650 32767713 -111514776 + GA-rich Low_complexity Low_complexity 3 66 0 247 218 55 0 chr12 32767729 32767784 -111514705 - MLT1L LTR MaLR -93 522 465 289 170 19 0 chr12 32767821 32767874 -111514615 - MLT1L LTR MaLR -221 394 341 208 156 67 22 chr12 32768062 32768107 -111514382 + L2 LINE L2 3221 3267 -5 685 244 124 31 chr12 32768194 32768452 -111514037 - MLT1L LTR MaLR -333 282 1 932 169 53 5 chr12 32768566 32768755 -111513734 + L1MB7 LINE L1 5987 6184 0 930 143 0 0 chr12 32769094 32769220 -111513269 - FLAM_C SINE Alu -17 126 1 393 288 117 24 chr12 32769549 32769754 -111512735 - L2 LINE L2 -403 2911 2688 448 250 32 36 chr12 32769755 32769962 -111512527 + L1ME3A LINE L1 5217 5423 -741 2322 101 0 0 chr12 32769982 32770280 -111512209 + AluSc SINE Alu 1 298 -11 2226 102 3 3 chr12 32770309 32770633 -111511856 + AluSc SINE Alu 1 309 0 513 194 43 0 chr12 32770637 32770730 -111511759 + AluJo SINE Alu 126 222 -90 1787 164 111 39 chr12 32770743 32771177 -111511312 - LTR10A LTR ERV1 -63 546 82 523 186 0 0 chr12 32771200 32771286 -111511203 + FAM SINE Alu 79 164 -21 652 221 138 37 chr12 32771473 32771771 -111510718 + L1ME3A LINE L1 5635 5962 -208 330 115 0 0 chr12 32771842 32771894 -111510595 + (CA)n Simple_repeat Simple_repeat 1 52 0 1110 202 0 32 chr12 32771955 32772232 -111510257 - L1M4 LINE L1 -955 5191 4924 21 36 0 0 chr12 32772258 32772286 -111510203 + AT_rich Low_complexity Low_complexity 1 28 0 1269 277 40 70 chr12 32772384 32772583 -111509906 - L2 LINE L2 -832 2482 2279 1410 175 17 55 chr12 32772583 32772875 -111509614 + AluJo SINE Alu 1 281 -31 1269 277 40 70 chr12 32772875 32773303 -111509186 - L2 LINE L2 -1035 2279 1874 2190 121 7 3 chr12 32773703 32774009 -111508480 + AluSq SINE Alu 1 307 -6 21 36 0 0 chr12 32774305 32774333 -111508156 + AT_rich Low_complexity Low_complexity 1 28 0 287 170 19 0 chr12 32774333 32774386 -111508103 + AluSc SINE Alu 130 183 -116 340 259 60 9 chr12 32774451 32774567 -111507922 - L1ME1 LINE L1 -152 6014 5893 695 198 2 25 chr12 32774591 32774692 -111507797 - L1ME1 LINE L1 -236 5915 5818 2231 104 0 17 chr12 32774692 32774991 -111507498 - AluSc SINE Alu -15 294 1 695 198 2 25 chr12 32774991 32775062 -111507427 - L1ME1 LINE L1 -333 5818 5747 1218 163 15 4 chr12 32775062 32775408 -111507081 + L1P5 LINE L1 5126 5474 -677 801 183 52 16 chr12 32775415 32775606 -111506883 - LTR47A LTR ERVL -41 411 214 1467 98 10 0 chr12 32775726 32775920 -111506569 + AluSc SINE Alu 103 298 -11 249 128 0 0 chr12 32775972 32776011 -111506478 + Alu SINE Alu 1 39 -261 2268 104 3 0 chr12 32776012 32776310 -111506179 + AluSq SINE Alu 1 299 -14 1185 133 0 0 chr12 32776310 32776475 -111506014 + AluSg/x SINE Alu 132 296 -14 2446 112 37 49 chr12 32776475 32776955 -111505534 - MER4E LTR ERV1 -316 326 1 345 177 73 10 chr12 32776966 32777062 -111505427 - L1MC4 LINE L1 -501 7541 7440 1952 142 13 13 chr12 32777082 32777392 -111505097 + AluSx SINE Alu 1 310 -2 447 126 63 84 chr12 32777442 32777537 -111504952 - U6 snRNA snRNA 0 107 15 2410 69 0 0 chr12 32777538 32777826 -111504663 + AluY SINE Alu 1 288 -23 506 256 0 12 chr12 32777826 32777986 -111504503 + (CATA)n Simple_repeat Simple_repeat 3 160 0 805 171 0 0 chr12 32778052 32778181 -111504308 + FLAM_C SINE Alu 1 129 -4 245 224 45 97 chr12 32778184 32778318 -111504171 - LTR40b LTR ERVL -7 455 329 476 242 150 65 chr12 32778522 32778828 -111503661 + LTR68 LTR ERV1 405 736 -4 1422 107 46 18 chr12 32779135 32779376 -111503113 - pTR5 LTR ERV1 -107 607 171 375 204 31 20 chr12 32779378 32779476 -111503013 - LTR30 LTR ERV1 -80 642 544 5984 132 58 117 chr12 32779476 32780839 -111501650 - pTR5 LTR ERV1 -413 2025 743 2845 141 24 12 chr12 32780965 32781554 -111500935 + MER4E LTR ERV1 3 766 0 362 238 68 122 chr12 32781659 32781699 -111500790 - MLT1J LTR MaLR -195 316 275 2463 127 53 14 chr12 32781699 32782132 -111500357 + LTR7 LTR ERV1 1 450 0 362 238 68 122 chr12 32782132 32782375 -111500114 - MLT1J LTR MaLR -236 275 47 303 28 0 0 chr12 32782375 32782411 -111500078 + (TG)n Simple_repeat Simple_repeat 2 37 0 5927 65 13 12 chr12 32782498 32783124 -111499365 + MER4E LTR ERV1 1 630 -136 2512 57 10 3 chr12 32783124 32783425 -111499064 + AluY SINE Alu 1 303 -8 5927 65 13 12 chr12 32783425 32783563 -111498926 + MER4E LTR ERV1 630 766 0 870 248 86 48 chr12 32783630 32784026 -111498463 + LTR16A1 LTR ERVL 47 457 0 381 188 89 0 chr12 32784033 32784134 -111498355 + L1MC/D LINE L1 5667 5776 -2032 2237 108 0 3 chr12 32784214 32784511 -111497978 - AluSq SINE Alu -17 296 1 747 189 77 0 chr12 32784516 32784659 -111497830 - LTR8 LTR ERV1 -537 154 1 2522 65 0 0 chr12 32784697 32784991 -111497498 + AluY SINE Alu 1 294 -17 309 203 29 0 chr12 32785123 32785192 -111497297 + LTR10A LTR ERV1 182 252 -357 1955 134 72 33 chr12 32785232 32785591 -111496898 + LTR10A LTR ERV1 176 548 -61 2620 39 3 10 chr12 32785623 32785931 -111496558 + AluY SINE Alu 1 306 -5 1875 166 23 0 chr12 32785947 32786249 -111496240 + AluJb SINE Alu 1 309 -3 1667 145 78 28 chr12 32787042 32787177 -111495312 + AluSq SINE Alu 1 128 -185 2118 101 4 0 chr12 32787177 32787488 -111495001 + AluSg SINE Alu 1 312 0 1667 145 78 28 chr12 32787488 32787633 -111494856 + AluSq SINE Alu 128 296 -17 392 54 0 18 chr12 32787636 32787692 -111494797 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 317 264 113 13 chr12 32787714 32787873 -111494616 + L1M4 LINE L1 3089 3263 -2883 485 360 70 21 chr12 32787894 32788324 -111494165 + L1M4 LINE L1 3374 3824 -2322 1361 102 6 0 chr12 32788411 32788588 -111493901 + AluY SINE Alu 38 215 -96 1619 203 85 91 chr12 32788713 32789230 -111493259 + LTR8A LTR ERV1 214 727 0 309 289 52 77 chr12 32789280 32789561 -111492928 - L1MCb LINE L1 -3092 3472 3199 2109 129 0 7 chr12 32789561 32789870 -111492619 - AluSx SINE Alu -5 307 1 309 289 52 77 chr12 32789870 32789913 -111492576 - L1MCb LINE L1 -3365 3199 3156 2352 164 96 30 chr12 32790084 32790614 -111491875 + LTR49 LTR ERV1 1 565 -30 180 0 0 0 chr12 32790791 32790811 -111491678 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2072 108 10 16 chr12 32791864 32792169 -111490320 - AluSg SINE Alu -7 303 1 389 277 89 78 chr12 32792228 32792565 -111489924 - HAL1b LINE L1 -483 865 533 1723 181 0 30 chr12 32792565 32792869 -111489620 - AluJb SINE Alu -12 300 6 389 277 89 78 chr12 32792869 32793224 -111489265 - HAL1b LINE L1 -815 533 165 347 267 46 38 chr12 32793219 32793350 -111489139 - L1MCb LINE L1 -4883 1671 1540 * 821 268 161 28 chr12 32793377 32793848 -111488641 + LTR1B LTR ERV1 56 589 -237 628 217 25 12 chr12 32793936 32794097 -111488392 - L1MCb LINE L1 -5011 1543 1381 1824 119 98 3 chr12 32794124 32794409 -111488080 - AluSx SINE Alu 0 312 1 823 153 8 0 chr12 32794409 32794533 -111487956 - AluSq/x SINE Alu -178 135 11 399 288 105 48 chr12 32794638 32794867 -111487622 - L1MCb LINE L1 -5279 1275 1034 1944 106 127 15 chr12 32794872 32795051 -111487438 + LTR29 LTR ERV1 1 159 -463 3168 130 27 4 chr12 32795051 32795536 -111486953 + LOR1a LTR ERV1 2 497 0 1944 106 127 15 chr12 32795536 32795696 -111486793 + LTR29 LTR ERV1 159 378 -244 526 158 40 0 chr12 32796826 32796927 -111485562 - FAM SINE Alu -13 172 68 2151 109 0 7 chr12 32796927 32797220 -111485269 - AluSx SINE Alu -16 296 6 3699 198 65 14 chr12 32797233 32798108 -111484381 - L1MCb LINE L1 -4851 1194 275 634 203 0 16 chr12 32798111 32798234 -111484255 - MER57A LTR ERV1 -25 378 258 1587 135 24 105 chr12 32798250 32798584 -111483905 - AluYb8 SINE Alu -11 307 1 912 243 102 49 chr12 32798584 32798889 -111483600 - L1MCb LINE L1 -6094 470 150 1031 192 9 45 chr12 32798901 32799125 -111483364 - AluJo SINE Alu -12 300 85 664 233 72 57 chr12 32799169 32799431 -111483058 - L2 LINE L2 0 3313 3048 451 272 154 5 chr12 32801140 32801335 -111481154 - LTR33 LTR ERVL -8 513 290 380 213 111 8 chr12 32801335 32801469 -111481020 - L1ME4a LINE L1 -261 5860 5713 354 195 12 12 chr12 32801942 32802024 -111480465 + L1M4 LINE L1 2256 2337 -3809 * 1380 198 3 32 chr12 32802021 32802281 -111480208 + L1M4 LINE L1 3604 3855 -2291 1909 171 59 102 chr12 32802281 32802561 -111479928 - MLT1D LTR MaLR 0 505 257 2156 125 0 3 chr12 32802561 32802856 -111479633 + AluSg SINE Alu 1 294 -16 1909 171 59 102 chr12 32802856 32803102 -111479387 - MLT1D LTR MaLR -248 257 2 1380 198 3 32 chr12 32803102 32803154 -111479335 + L1M4 LINE L1 3855 3907 -2239 336 134 72 0 chr12 32803154 32803229 -111479260 + AluS SINE Alu 5 62 -238 1698 139 4 26 chr12 32803815 32804081 -111478408 + AluJo SINE Alu 1 260 -52 776 62 0 18 chr12 32804107 32804219 -111478270 + (GAAA)n Simple_repeat Simple_repeat 2 111 0 889 132 7 21 chr12 32804254 32804398 -111478091 - AluSg/x SINE Alu -8 302 161 2002 116 0 0 chr12 32804398 32804666 -111477823 - AluSx SINE Alu -38 274 7 2352 98 0 0 chr12 32804998 32805303 -111477186 + AluY SINE Alu 1 305 -6 182 213 64 0 chr12 32805429 32805476 -111477013 - MER5B DNA MER1_type -1 177 128 366 275 0 0 chr12 32806605 32806685 -111475804 + MLT1J LTR MaLR 99 178 -333 2655 206 10 20 chr12 32806945 32807455 -111475034 + MLT1D LTR MaLR 1 505 0 2546 66 0 3 chr12 32807566 32807871 -111474618 - AluY SINE Alu -7 304 1 2213 112 0 3 chr12 32807921 32808217 -111474272 - AluSx SINE Alu -17 295 1 2341 87 0 3 chr12 32808429 32808717 -111473772 - AluY SINE Alu -24 287 1 1134 145 0 0 chr12 32809142 32809314 -111473175 + AluJb SINE Alu 135 306 -6 2273 82 32 0 chr12 32809832 32810112 -111472377 + AluY SINE Alu 1 289 -22 1721 185 10 0 chr12 32810151 32810448 -111472041 - AluJb SINE Alu -12 300 1 186 103 0 0 chr12 32810606 32810635 -111471854 + (CA)n Simple_repeat Simple_repeat 2 30 0 2435 84 0 0 chr12 32810649 32810947 -111471542 - AluY SINE Alu -13 298 1 329 210 62 0 chr12 32810948 32811029 -111471460 - L1MC4a LINE L1 -1867 5941 5856 3673 123 37 4 chr12 32811029 32811539 -111470950 - MER1A DNA MER1_type 0 527 1 289 141 0 64 chr12 32811568 32811646 -111470843 + (TTTC)n Simple_repeat Simple_repeat 1 73 0 539 195 25 24 chr12 32811700 32811920 -111470569 + CT-rich Low_complexity Low_complexity 1 220 0 192 77 0 0 chr12 32811963 32811989 -111470500 + (T)n Simple_repeat Simple_repeat 1 26 0 2712 107 71 11 chr12 32812376 32812825 -111469664 + LTR1 LTR ERV1 310 785 0 784 192 0 0 chr12 32813493 32813623 -111468866 - FLAM_C SINE Alu -3 130 1 300 340 87 21 chr12 32813714 32813955 -111468534 - L2 LINE L2 -979 2335 2079 2060 179 127 54 chr12 32814177 32814673 -111467816 + MLT1F LTR MaLR 3 534 -8 373 184 11 19 chr12 32814850 32814931 -111467558 + AluJ/FLAM SINE Alu 1 66 -236 2846 177 101 30 chr12 32815061 32815172 -111467317 + L1MB7 LINE L1 5492 5594 -590 1968 89 85 14 chr12 32815172 32815453 -111467036 + AluY SINE Alu 1 301 -10 2846 177 101 30 chr12 32815453 32815985 -111466504 + L1MB7 LINE L1 5594 6181 -3 338 308 96 31 chr12 32816011 32816331 -111466158 + L1M4 LINE L1 4152 4515 -1631 1782 164 7 3 chr12 32816331 32816624 -111465865 + AluJb SINE Alu 1 294 -18 338 308 96 31 chr12 32816624 32816780 -111465709 + L1M4 LINE L1 4515 4659 -1487 307 200 31 0 chr12 32816918 32816983 -111465506 + L1MC/D LINE L1 5783 5849 -1959 800 164 0 16 chr12 32816993 32817121 -111465368 + AluSq/x SINE Alu 1 126 -187 312 151 0 65 chr12 32817125 32817152 -111465337 + GA-rich Low_complexity Low_complexity 2 29 -59 2055 113 7 45 chr12 32817152 32817461 -111465028 + AluSx SINE Alu 1 297 -15 312 151 0 65 chr12 32817461 32817526 -111464963 + GA-rich Low_complexity Low_complexity 29 88 0 * 395 123 0 27 chr12 32817508 32817581 -111464908 + (GGAA)n Simple_repeat Simple_repeat 2 72 0 297 0 0 0 chr12 32817713 32817746 -111464743 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 2031 130 0 18 chr12 32817746 32818031 -111464458 - AluSx SINE Alu -32 280 1 36 23 0 0 chr12 32818096 32818139 -111464350 + AT_rich Low_complexity Low_complexity 1 43 0 3806 182 33 129 chr12 32818324 32818690 -111463799 + L1ME LINE L1 4071 4470 -1676 2405 90 0 6 chr12 32818690 32819001 -111463488 + AluSg SINE Alu 1 309 -1 3806 182 33 129 chr12 32819001 32819050 -111463439 + L1ME LINE L1 4470 4522 -1624 747 127 82 30 chr12 32819050 32819184 -111463305 + FRAM SINE Alu 36 176 0 3806 182 33 129 chr12 32819184 32819950 -111462539 + L1ME LINE L1 4522 5260 -886 821 119 0 0 chr12 32819951 32820069 -111462420 + AluY SINE Alu 1 118 -193 638 225 29 14 chr12 32820232 32820370 -111462119 - MIR SINE MIR -82 180 41 358 310 51 19 chr12 32820677 32820835 -111461654 + L1ME LINE L1 5560 5722 -448 984 189 100 0 chr12 32820931 32821121 -111461368 + L1ME LINE L1 5552 5760 -406 3298 106 0 11 chr12 32821133 32821588 -111460901 - L1PB1 LINE L1 -1 6150 5701 729 191 17 0 chr12 32822142 32822281 -111460208 - FLAM_C SINE Alu 0 141 1 1761 186 7 0 chr12 32822347 32822638 -111459851 - AluJb SINE Alu -19 293 1 2350 106 0 0 chr12 32822642 32822944 -111459545 - AluSq SINE Alu -11 302 1 858 266 200 10 chr12 32823299 32823725 -111458764 - L2 LINE L2 -3 3310 2798 2220 123 3 0 chr12 32823747 32824047 -111458442 + AluSx SINE Alu 1 301 -11 1997 167 45 8 chr12 32824070 32824423 -111458066 - MER47A DNA MER2_type 0 366 1 1018 184 6 6 chr12 32824579 32824753 -111457736 - AluJb SINE Alu -2 310 137 1551 128 27 0 chr12 32824987 32825206 -111457283 + AluSg SINE Alu 1 225 -85 957 102 0 0 chr12 32825312 32825439 -111457050 - AluSc SINE Alu -182 127 1 938 60 0 0 chr12 32825440 32825557 -111456932 + MER4E LTR ERV1 423 539 -227 23 0 0 0 chr12 32825571 32825594 -111456895 + GC_rich Low_complexity Low_complexity 1 23 0 1791 66 9 4 chr12 32825607 32825835 -111456654 + MER4E LTR ERV1 538 766 0 497 163 61 31 chr12 32826522 32826620 -111455869 + AluSg/x SINE Alu 114 214 -96 851 182 0 39 chr12 32826623 32826777 -111455712 + AluJb SINE Alu 149 296 -16 671 238 65 24 chr12 32827095 32827263 -111455226 + FAM SINE Alu 1 175 0 2310 101 3 3 chr12 32827477 32827785 -111454704 - AluSx SINE Alu -2 310 3 573 294 87 13 chr12 32827820 32828051 -111454438 - L2 LINE L2 0 3313 3066 1983 122 24 0 chr12 32829162 32829449 -111453040 + AluSg SINE Alu 1 294 -16 264 225 296 0 chr12 32829594 32829736 -111452753 - L1ME4a LINE L1 -204 5917 5734 290 250 24 12 chr12 32829816 32829900 -111452589 - HsTC2 DNA Tc2 -1813 85 1 2389 60 28 0 chr12 32830001 32830286 -111452203 + AluY SINE Alu 1 293 -18 271 327 30 30 chr12 32830416 32830517 -111451972 - L2 LINE L2 -182 3090 2990 2224 117 0 0 chr12 32830598 32830896 -111451593 + AluSq SINE Alu 1 298 -15 242 331 55 16 chr12 32830915 32831032 -111451457 - L2 LINE L2 -1323 1991 1867 2212 97 17 3 chr12 32831032 32831321 -111451168 + AluSx SINE Alu 1 293 -19 848 163 0 8 chr12 32831351 32831480 -111451009 + AluJb SINE Alu 18 145 -167 2192 107 0 3 chr12 32831481 32831780 -111450709 + AluSx SINE Alu 11 308 -4 288 122 0 0 chr12 32832991 32833032 -111449457 + 5S rRNA rRNA 2 42 -79 225 331 73 44 chr12 32833107 32833243 -111449246 - L2 LINE L2 -411 2903 2764 257 300 25 0 chr12 32833324 32833404 -111449085 - MIR3 SINE MIR 0 208 127 1193 179 155 8 chr12 32833426 32833677 -111448812 - AluJo SINE Alu -16 296 9 522 193 0 34 chr12 32833948 32834067 -111448422 + L1MB8 LINE L1 6055 6169 -9 24 32 0 0 chr12 32834069 32834100 -111448389 + AT_rich Low_complexity Low_complexity 1 31 0 715 146 39 0 chr12 32834848 32834951 -111447538 - FLAM_C SINE Alu -35 108 2 458 296 119 6 chr12 32835855 32836031 -111446458 - MIR3 SINE MIR -12 196 1 1871 88 42 78 chr12 32836759 32837065 -111445424 - AluSc SINE Alu -14 295 1 2382 87 3 0 chr12 32837317 32837615 -111444874 + AluSp SINE Alu 1 299 -14 1936 143 6 25 chr12 32837625 32837939 -111444550 + AluJb SINE Alu 1 308 -4 181 180 40 0 chr12 32837992 32838042 -111444447 + (TA)n Simple_repeat Simple_repeat 2 53 0 1522 166 0 44 chr12 32838178 32838497 -111443992 - AluJb SINE Alu 0 306 1 201 171 0 0 chr12 32838531 32838566 -111443923 + T-rich Low_complexity Low_complexity 2 36 0 2120 108 3 0 chr12 32839014 32839301 -111443188 + AluSx SINE Alu 1 288 -24 25 51 0 0 chr12 32839509 32839548 -111442941 + AT_rich Low_complexity Low_complexity 1 39 0 1323 189 46 21 chr12 32839604 32839884 -111442605 + AluJo SINE Alu 1 287 -25 412 327 81 54 chr12 32839894 32839968 -111442521 - L2 LINE L2 -86 3186 3115 2154 102 7 7 chr12 32839968 32840262 -111442227 + AluSg SINE Alu 1 294 -16 412 327 81 54 chr12 32840262 32840284 -111442205 - L2 LINE L2 -157 3115 3095 2297 93 7 0 chr12 32840284 32840586 -111441903 + AluSq SINE Alu 1 304 -9 412 327 81 54 chr12 32840586 32841022 -111441467 - L2 LINE L2 -177 3095 2636 2218 115 3 0 chr12 32841282 32841586 -111440903 - AluSq SINE Alu -8 305 1 537 161 46 0 chr12 32841590 32841677 -111440812 - AluJo SINE Alu -173 139 49 1729 135 12 0 chr12 32841955 32842235 -111440254 + AluSx SINE Alu 39 321 0 1106 185 14 31 chr12 32842320 32842604 -111439885 - MLT1A1 LTR MaLR 0 365 2 2179 113 3 16 chr12 32842668 32842979 -111439510 + AluSx SINE Alu 1 307 -5 1831 172 7 0 chr12 32843049 32843340 -111439149 + AluJb SINE Alu 1 293 -19 21 0 0 0 chr12 32843788 32843809 -111438680 + AT_rich Low_complexity Low_complexity 1 21 0 1173 175 16 0 chr12 32843824 32844007 -111438482 - AluJo SINE Alu -126 186 1 1153 109 0 0 chr12 32844245 32844392 -111438097 + AluSq/x SINE Alu 1 147 -165 942 83 0 0 chr12 32844505 32844625 -111437864 + AluSg/x SINE Alu 180 299 -11 766 171 171 0 chr12 32844627 32844779 -111437710 - MER2 DNA MER2_type -167 178 1 2021 157 6 14 chr12 32844779 32845124 -111437365 - L1MB7 LINE L1 -355 5829 5488 2141 105 0 7 chr12 32845125 32845420 -111437069 - AluSx SINE Alu 0 312 20 600 271 33 17 chr12 32845432 32845613 -111436876 - MIR SINE MIR -65 197 14 679 171 23 54 chr12 32846024 32846153 -111436336 + AluJo SINE Alu 11 135 -177 1265 189 5 0 chr12 32846153 32846375 -111436114 + AluJb SINE Alu 85 307 -5 1863 153 0 0 chr12 32846375 32846690 -111435799 + AluSx SINE Alu 1 315 0 500 238 79 38 chr12 32847315 32847551 -111434938 - MIR SINE MIR -14 248 9 216 0 0 0 chr12 32847595 32847619 -111434870 + (A)n Simple_repeat Simple_repeat 1 24 0 1556 146 3 93 chr12 32847619 32847940 -111434549 + AluJb SINE Alu 1 292 -20 567 226 9 0 chr12 32848135 32848250 -111434239 + MLT2B1 LTR ERVL 1 116 -404 1102 102 0 7 chr12 32848252 32848399 -111434090 + AluSq/x SINE Alu 3 148 -165 1917 153 3 3 chr12 32848672 32848973 -111433516 + AluJb SINE Alu 1 301 -11 2309 91 0 26 chr12 32849125 32849265 -111433224 + AluSx SINE Alu 1 143 -169 2287 111 0 0 chr12 32849265 32849571 -111432918 + AluSx SINE Alu 3 308 -4 2309 91 0 26 chr12 32849571 32849737 -111432752 + AluSx SINE Alu 143 299 -13 351 275 0 8 chr12 32849884 32849984 -111432505 + MIR SINE MIR 52 147 -61 1000 106 0 0 chr12 32849989 32850121 -111432368 + FLAM_C SINE Alu 1 132 -11 471 234 16 8 chr12 32850132 32850260 -111432229 + MIR SINE MIR 134 262 0 2975 198 11 2 chr12 32850935 32851487 -111431002 - MER41D LTR ERV1 0 557 1 1066 157 0 0 chr12 32851520 32851692 -111430797 - AluSg/x SINE Alu -7 303 132 1200 263 76 40 chr12 32851697 32852279 -111430210 - MER41D-int LTR ERV1 -27 7729 7127 2422 58 0 0 chr12 32852279 32852573 -111429916 - AluY SINE Alu -17 294 1 2036 86 45 7 chr12 32853614 32853904 -111428585 - AluSq SINE Alu -12 301 1 2070 109 0 14 chr12 32854034 32854328 -111428161 - AluSx SINE Alu -22 290 1 189 0 0 0 chr12 32854405 32854426 -111428063 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 771 138 9 0 chr12 32854429 32854545 -111427944 - AluJb SINE Alu -194 118 2 2234 92 0 10 chr12 32854875 32855178 -111427311 + AluSg SINE Alu 1 300 -10 425 287 26 67 chr12 32855266 32855310 -111427179 - MIR3 SINE MIR -11 197 153 4028 122 63 8 chr12 32855310 32855976 -111426513 - MER39 LTR ERV1 -4 703 1 425 287 26 67 chr12 32855976 32856126 -111426363 - MIR3 SINE MIR -55 153 11 2438 52 0 7 chr12 32856250 32856556 -111425933 - AluY SINE Alu -7 304 1 693 209 23 0 chr12 32856564 32856693 -111425796 - AluJb SINE Alu -179 133 2 240 260 137 0 chr12 32856693 32856766 -111425723 + MIR SINE MIR 113 195 -67 4010 139 13 6 chr12 32856841 32857472 -111425017 - MER41B LTR ERV1 0 635 1 1636 145 50 7 chr12 32857717 32858000 -111424489 - AluJo SINE Alu -15 297 3 819 308 53 32 chr12 32858672 32859010 -111423479 - L2 LINE L2 0 3313 2969 1981 43 110 7 chr12 32859017 32859299 -111423190 + AluY SINE Alu 1 311 0 1237 126 5 0 chr12 32859299 32859490 -111422999 + AluSp SINE Alu 121 312 -1 2123 85 3 0 chr12 32859495 32859817 -111422672 + AluSp SINE Alu 1 323 0 2190 95 3 0 chr12 32859884 32860179 -111422310 + AluSc SINE Alu 1 296 -13 209 299 72 72 chr12 32860222 32860319 -111422170 + L2 LINE L2 3139 3235 -37 1840 123 0 65 chr12 32860324 32860504 -111421985 - AluSx SINE Alu -8 304 153 2259 103 0 0 chr12 32860504 32860816 -111421673 - AluSx SINE Alu 0 312 1 1840 123 0 65 chr12 32860816 32860960 -111421529 - AluSx SINE Alu -159 153 1 2040 112 0 13 chr12 32861164 32861469 -111421020 - AluSx SINE Alu -11 301 1 1460 154 4 11 chr12 32861483 32861749 -111420740 + L1MA6 LINE L1 6037 6300 0 434 132 44 0 chr12 32861773 32861841 -111420648 + MLT1A2 LTR MaLR 1 71 -303 2114 114 3 0 chr12 32861844 32862142 -111420347 - AluSq SINE Alu -14 299 1 2475 78 44 0 chr12 32862142 32862486 -111420003 - L1PA11 LINE L1 -2 6172 5814 784 169 0 0 chr12 32862486 32862616 -111419873 - FRAM SINE Alu -9 167 38 2178 97 13 3 chr12 32862975 32863284 -111419205 + AluSx SINE Alu 1 312 0 1215 249 61 32 chr12 32863490 32863900 -111418589 - MER90 LTR ERV1 -87 527 106 510 266 35 56 chr12 32863901 32864187 -111418302 - MER34B LTR ERV1 0 565 286 2958 93 42 9 chr12 32864187 32864571 -111417918 + MLT2A1 LTR ERVL 1 402 -42 672 99 0 0 chr12 32864571 32864682 -111417807 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 2958 93 42 9 chr12 32864682 32864727 -111417762 + MLT2A1 LTR ERVL 402 444 0 361 228 105 18 chr12 32864822 32864936 -111417553 - MER34B LTR ERV1 -441 124 1 844 293 35 4 chr12 32865076 32865308 -111417181 + MIR SINE MIR 6 244 -18 2031 209 87 27 chr12 32865486 32866036 -111416453 - MER92B LTR ERV1 0 636 54 2118 99 6 13 chr12 32866036 32866383 -111416106 - AluSx SINE Alu 0 345 1 1936 52 0 12 chr12 32866394 32866642 -111415847 - AluY SINE Alu -10 301 57 456 123 0 0 chr12 32866645 32866710 -111415779 - MER92B LTR ERV1 -571 65 1 2104 94 3 29 chr12 32866969 32867278 -111415211 + AluSq SINE Alu 1 301 -12 2266 79 7 3 chr12 32867785 32868089 -111414400 - AluSq SINE Alu -3 310 6 285 236 69 14 chr12 32868428 32868500 -111413989 - MIR3 SINE MIR 0 208 133 2211 130 55 0 chr12 32868763 32869108 -111413381 + THE1B LTR MaLR 1 364 0 2151 105 0 0 chr12 32869209 32869503 -111412986 - AluSx SINE Alu -18 294 1 830 269 105 61 chr12 32869600 32870106 -111412383 + MLT1K LTR MaLR 57 584 -4 688 160 50 0 chr12 32870172 32870291 -111412198 - FLAM_C SINE Alu -18 125 1 849 181 7 0 chr12 32871165 32871381 -111411108 + FRAM SINE Alu 20 236 0 1518 174 7 14 chr12 32871594 32871887 -111410602 - AluJo SINE Alu -21 291 1 1443 161 122 0 chr12 32871931 32872186 -111410303 + AluJb SINE Alu 2 287 -15 22 70 0 0 chr12 32872248 32872291 -111410198 + AT_rich Low_complexity Low_complexity 1 43 0 1707 161 7 7 chr12 32872369 32872674 -111409815 - AluJb SINE Alu -7 305 1 2128 95 7 3 chr12 32872795 32873091 -111409398 + AluSc SINE Alu 1 297 -12 289 204 0 0 chr12 32873100 32873154 -111409335 + L1M4 LINE L1 2667 2720 -3426 1768 128 0 55 chr12 32873160 32873516 -111408973 + AluSx SINE Alu 1 338 0 473 292 37 35 chr12 32874005 32874200 -111408289 + MIR SINE MIR 36 229 -33 1264 84 6 0 chr12 32874552 32874719 -111407770 + AluSq SINE Alu 135 302 -11 189 0 0 0 chr12 32875015 32875036 -111407453 + (A)n Simple_repeat Simple_repeat 1 21 0 957 160 11 17 chr12 32876282 32876457 -111406032 + FAM SINE Alu 1 174 -1 1650 154 7 18 chr12 32876457 32876772 -111405717 + AluJb SINE Alu 6 317 0 2058 122 10 0 chr12 32876785 32877088 -111405401 + AluSx SINE Alu 1 306 -6 1634 146 19 41 chr12 32878149 32878465 -111404024 + AluSx SINE Alu 1 309 -3 1037 185 0 0 chr12 32878466 32878639 -111403850 + AluJb SINE Alu 134 306 -6 1880 122 0 20 chr12 32878642 32878938 -111403551 + AluSx SINE Alu 1 290 -22 244 138 0 35 chr12 32878949 32879007 -111403482 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 1625 148 10 61 chr12 32879075 32879385 -111403104 + AluJo SINE Alu 1 294 -18 24 67 0 0 chr12 32879853 32879898 -111402591 + AT_rich Low_complexity Low_complexity 1 45 0 2522 52 0 3 chr12 32879903 32880211 -111402278 + AluY SINE Alu 1 307 -4 1763 158 0 10 chr12 32880322 32880626 -111401863 + AluJb SINE Alu 7 307 -5 344 253 281 0 chr12 32881275 32881453 -111401036 + MIR SINE MIR 32 259 -3 1778 145 16 7 chr12 32881854 32882113 -111400376 + AluSx SINE Alu 1 265 -47 210 37 0 0 chr12 32882113 32882140 -111400349 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1778 145 16 7 chr12 32882140 32882184 -111400305 + AluSx SINE Alu 265 307 -5 379 174 11 11 chr12 32882184 32882276 -111400213 + GA-rich Low_complexity Low_complexity 3 94 0 31 0 0 0 chr12 32882433 32882464 -111400025 + AT_rich Low_complexity Low_complexity 1 31 0 1901 153 0 6 chr12 32882955 32883269 -111399220 - AluSx SINE Alu 0 312 1 1621 153 28 25 chr12 32883298 32883580 -111398909 + AluJb SINE Alu 1 283 -29 2047 97 20 13 chr12 32883887 32884187 -111398302 + AluSp SINE Alu 1 302 -11 1372 210 76 34 chr12 32884283 32884611 -111397878 + MER2 DNA MER2_type 2 343 -1 180 221 255 90 chr12 32884725 32884870 -111397619 - MIR3 SINE MIR -39 169 1 381 230 42 204 chr12 32885332 32885486 -111397003 + MIR SINE MIR 1 178 -84 2156 104 0 0 chr12 32885486 32885784 -111396705 + AluSg SINE Alu 1 298 -12 381 230 42 204 chr12 32885784 32885869 -111396620 + MIR SINE MIR 178 182 -80 2108 121 0 3 chr12 32885869 32886182 -111396307 + AluSx SINE Alu 1 312 0 381 230 42 204 chr12 32886182 32886250 -111396239 + MIR SINE MIR 182 259 -3 254 247 0 56 chr12 32886676 32886765 -111395724 + CT-rich Low_complexity Low_complexity 6 89 0 1898 139 60 117 chr12 32886935 32887005 -111395484 - MSTB1 LTR MaLR 0 432 360 1538 147 17 51 chr12 32887005 32887298 -111395191 + AluJo SINE Alu 1 283 -29 1898 139 60 117 chr12 32887298 32887680 -111394809 - MSTB1 LTR MaLR -72 360 6 188 301 263 26 chr12 32888018 32888174 -111394315 + MIR3 SINE MIR 6 198 -10 26 50 0 0 chr12 32888963 32889003 -111393486 + AT_rich Low_complexity Low_complexity 1 40 0 2434 224 97 47 chr12 32889466 32890010 -111392479 + L2 LINE L2 2022 2537 -776 2232 97 10 6 chr12 32890010 32890321 -111392168 - AluSx SINE Alu 0 312 1 2434 224 97 47 chr12 32890321 32890869 -111391620 + L2 LINE L2 2537 3185 -128 1739 168 45 15 chr12 32890869 32891203 -111391286 - MER2 DNA MER2_type 0 344 1 2434 224 97 47 chr12 32891203 32891337 -111391152 + L2 LINE L2 3185 3311 -2 25 0 0 0 chr12 32893325 32893350 -111389139 + GC_rich Low_complexity Low_complexity 1 25 0 28 79 0 0 chr12 32893485 32893548 -111388941 + GC_rich Low_complexity Low_complexity 1 63 0 28 29 0 0 chr12 32893651 32893686 -111388803 + GC_rich Low_complexity Low_complexity 1 35 0 708 163 0 52 chr12 32894431 32894566 -111387923 + FLAM_C SINE Alu 1 128 -5 21 0 0 0 chr12 32894570 32894591 -111387898 + AT_rich Low_complexity Low_complexity 1 21 0 787 126 8 31 chr12 32894591 32894718 -111387771 - FLAM_C SINE Alu -9 124 1 1037 201 18 14 chr12 32894987 32895206 -111387283 + AluJo SINE Alu 1 220 -92 347 56 19 74 chr12 32895207 32895261 -111387228 + AluSg/x SINE Alu 85 131 -169 2138 92 10 7 chr12 32895302 32895606 -111386883 + AluSc SINE Alu 1 305 -4 182 331 71 55 chr12 32895711 32895838 -111386651 + L2 LINE L2 3139 3267 -5 2052 110 16 13 chr12 32895930 32896240 -111386249 + AluSx SINE Alu 1 311 -1 605 125 0 80 chr12 32896270 32896292 -111386197 - U5 snRNA snRNA -13 103 81 2149 107 3 0 chr12 32896292 32896592 -111385897 + AluSq SINE Alu 1 301 -12 605 125 0 80 chr12 32896592 32896681 -111385808 - U5 snRNA snRNA -35 81 1 1508 147 0 19 chr12 32897704 32897962 -111384527 - AluJb SINE Alu -49 263 11 306 188 50 40 chr12 32897962 32898063 -111384426 + LTR41 LTR ERVL 656 757 -16 1629 226 53 27 chr12 32898068 32898444 -111384045 + L1ME1 LINE L1 5733 6122 -44 2333 81 0 0 chr12 32898444 32898739 -111383750 - AluSx SINE Alu -17 295 1 1629 226 53 27 chr12 32898739 32898774 -111383715 + L1ME1 LINE L1 6122 6155 -11 851 197 0 0 chr12 32898774 32898921 -111383568 + AluJb SINE Alu 134 280 -32 288 77 0 0 chr12 32898921 32898960 -111383529 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 614 299 116 9 chr12 32899188 32899412 -111383077 + MIR SINE MIR 15 262 0 339 99 28 42 chr12 32899462 32899533 -111382956 - AluSp/q SINE Alu -1 302 233 1110 178 43 66 chr12 32899930 32900049 -111382440 - AluJo SINE Alu -60 252 132 1679 158 23 7 chr12 32900049 32900353 -111382136 - AluJb SINE Alu -3 309 1 1110 178 43 66 chr12 32900353 32900491 -111381998 - AluJo SINE Alu -180 132 1 1970 117 3 3 chr12 32900857 32901147 -111381342 + AluSx SINE Alu 5 294 -18 2006 204 19 45 chr12 32901242 32901713 -111380776 + MLT1C LTR MaLR 6 464 -3 338 0 24 0 chr12 32902034 32902076 -111380413 + (TTG)n Simple_repeat Simple_repeat 2 44 0 854 138 0 0 chr12 32902084 32902200 -111380289 - FLAM_C SINE Alu -26 117 2 2300 117 3 0 chr12 32902341 32902649 -111379840 + AluSx SINE Alu 1 309 -3 563 319 81 39 chr12 32903148 32903505 -111378984 + MLT1K LTR MaLR 199 570 -18 2524 66 0 0 chr12 32903587 32903888 -111378601 + AluY SINE Alu 1 301 -10 2186 88 0 41 chr12 32903942 32904259 -111378230 - AluY SINE Alu -7 304 1 1996 120 3 10 chr12 32904361 32904660 -111377829 - AluSg SINE Alu -13 297 1 704 90 10 0 chr12 32904783 32904883 -111377606 - AluY SINE Alu -209 102 2 2395 84 0 7 chr12 32904986 32905285 -111377204 - AluSg SINE Alu -13 297 1 344 265 93 12 chr12 32905401 32905563 -111376926 + L1MC/D LINE L1 5586 5760 -2048 734 176 48 0 chr12 32905575 32905700 -111376789 + AluJ SINE Alu 1 131 -181 39 0 0 0 chr12 32905701 32905740 -111376749 + AT_rich Low_complexity Low_complexity 1 39 0 2218 131 0 6 chr12 32905861 32906173 -111376316 + AluSx SINE Alu 1 310 -2 240 179 128 39 chr12 32906488 32906566 -111375923 - L2 LINE L2 0 3313 3229 950 181 6 17 chr12 32906643 32906820 -111375669 + AluJ SINE Alu 133 307 -5 1222 134 0 0 chr12 32907097 32907269 -111375220 - AluSg/x SINE Alu -1 311 140 1387 222 67 0 chr12 32907295 32907461 -111375028 - AluJb SINE Alu -9 303 109 282 29 0 0 chr12 32907461 32907496 -111374993 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 1387 222 67 0 chr12 32907496 32907613 -111374876 - AluJb SINE Alu -203 109 1 2071 167 25 11 chr12 32907748 32908108 -111374381 - MLT1A1 LTR MaLR 0 365 1 538 144 63 0 chr12 32909130 32909241 -111373248 - L1MA8 LINE L1 0 6291 6174 391 105 0 0 chr12 32909282 32909339 -111373150 - AluSx SINE Alu -2 300 244 1197 134 0 18 chr12 32909339 32909510 -111372979 - AluSx SINE Alu -144 168 1 579 176 0 64 chr12 32909544 32909669 -111372820 - FLAM_C SINE Alu -14 129 13 697 152 9 0 chr12 32909709 32909821 -111372668 + FLAM_A SINE Alu 18 130 -12 2491 82 0 16 chr12 32909821 32910136 -111372353 + AluSq SINE Alu 1 310 -3 2259 183 36 5 chr12 32910165 32910586 -111371903 + Tigger2a DNA MER2_type 1 434 0 617 190 17 0 chr12 32910771 32910887 -111371602 + FLAM_C SINE Alu 5 122 -11 21 57 0 0 chr12 32910887 32910922 -111371567 + AT_rich Low_complexity Low_complexity 1 35 0 1197 176 0 0 chr12 32910982 32911170 -111371319 + AluJ SINE Alu 5 192 -120 2528 72 6 3 chr12 32911172 32911714 -111370775 + LTR10E LTR ERV1 1 621 -12 1312 33 0 0 chr12 32911717 32911868 -111370621 + L1PA3 LINE L1 6002 6152 -3 726 186 0 0 chr12 32911905 32912029 -111370460 + AluJ SINE Alu 188 311 -1 360 191 11 157 chr12 32912836 32913014 -111369475 - L1MC5 LINE L1 -45 7916 7765 2116 136 3 7 chr12 32913024 32913333 -111369156 + AluSx SINE Alu 5 312 0 2433 88 0 0 chr12 32913335 32913640 -111368849 + AluY SINE Alu 1 305 -6 35 24 0 0 chr12 32913640 32913682 -111368807 + AT_rich Low_complexity Low_complexity 1 42 0 2251 123 0 0 chr12 32913691 32913992 -111368497 + AluSx SINE Alu 1 301 -11 716 144 72 50 chr12 32914170 32914309 -111368180 + FLAM_C SINE Alu 2 143 0 629 217 103 53 chr12 32914808 32915055 -111367434 - MLT1H1 LTR MaLR -261 281 42 1453 142 14 142 chr12 32915372 32915488 -111367001 + AluJo SINE Alu 2 131 -171 2496 87 0 0 chr12 32915488 32915799 -111366690 + AluY SINE Alu 1 311 0 1453 142 14 142 chr12 32915799 32916026 -111366463 + AluJo SINE Alu 131 301 -1 772 98 46 23 chr12 32916038 32916211 -111366278 + GA-rich Low_complexity Low_complexity 2 178 0 340 264 22 0 chr12 32916228 32916319 -111366170 + MIR SINE MIR 1 93 -169 189 0 0 0 chr12 32918208 32918229 -111364260 + (A)n Simple_repeat Simple_repeat 1 21 0 2531 162 73 7 chr12 32919753 32920192 -111362297 + MER21B LTR ERV1 1 468 -395 2242 102 0 0 chr12 32920199 32920483 -111362006 - AluSc SINE Alu -25 284 1 192 77 0 0 chr12 32920484 32920510 -111361979 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 884 145 8 0 chr12 32920510 32920641 -111361848 - AluSg/x SINE Alu -33 277 146 1297 165 91 8 chr12 32920642 32920885 -111361604 + MER21B LTR ERV1 463 725 -138 800 164 21 14 chr12 32920942 32921082 -111361407 - AluJb SINE Alu -23 289 149 474 64 167 0 chr12 32921111 32921189 -111361300 + MER21A LTR ERV1 814 904 -27 753 156 28 14 chr12 32921335 32921476 -111361013 + LTR54 LTR ERV1 1 143 -367 3070 145 32 0 chr12 32921480 32921976 -111360513 - MER41E LTR ERV1 0 512 1 642 138 51 174 chr12 32922061 32922257 -111360232 + LTR54 LTR ERV1 146 317 -193 1942 145 0 19 chr12 32922276 32922587 -111359902 - AluSx SINE Alu -5 307 3 1062 88 0 22 chr12 32922589 32922726 -111359763 - AluSq/x SINE Alu -179 134 1 1933 153 3 3 chr12 32922878 32923179 -111359310 - AluJb SINE Alu -11 301 1 1109 102 0 7 chr12 32923452 32923599 -111358890 - AluSq/x SINE Alu -165 148 3 566 226 9 0 chr12 32923601 32923716 -111358773 - MLT2B2 LTR ERVL -399 116 1 1506 146 3 99 chr12 32923911 32924234 -111358255 - AluJb SINE Alu -20 292 1 216 0 0 0 chr12 32924234 32924258 -111358231 + (T)n Simple_repeat Simple_repeat 1 24 0 442 238 79 38 chr12 32924302 32924538 -111357951 + MIR SINE MIR 9 248 -14 1884 153 0 0 chr12 32925163 32925478 -111357011 - AluSx SINE Alu 0 315 1 1273 189 5 0 chr12 32925478 32925700 -111356789 - AluJb SINE Alu -5 307 85 2332 105 3 0 chr12 32925926 32926232 -111356257 - AluSq SINE Alu -6 307 1 383 55 36 0 chr12 32926891 32926946 -111355543 - L1MA2 LINE L1 -6 6298 6242 1553 121 55 0 chr12 32927225 32927481 -111355008 - L1MA2 LINE L1 0 6304 6035 2419 73 7 0 chr12 32927491 32927794 -111354695 - AluSp SINE Alu -8 305 1 190 333 49 0 chr12 32927833 32927914 -111354575 - L2 LINE L2 -680 2634 2550 1839 155 30 10 chr12 32928281 32928577 -111353912 - AluJo SINE Alu -10 302 1 654 119 30 0 chr12 32928641 32928742 -111353747 + AluSg/x SINE Alu 196 299 -11 183 80 0 0 chr12 32930030 32930055 -111352434 + (T)n Simple_repeat Simple_repeat 1 25 0 1605 115 0 0 chr12 32930055 32930273 -111352216 + AluSg/x SINE Alu 91 308 -2 2303 99 20 3 chr12 32930274 32930577 -111351912 + AluSg SINE Alu 1 308 -2 1726 167 0 27 chr12 32930587 32930887 -111351602 + AluJb SINE Alu 1 292 -20 1398 176 9 108 chr12 32930945 32931129 -111351360 - AluJb SINE Alu 0 302 101 2023 130 0 0 chr12 32931129 32931406 -111351083 - AluSq SINE Alu -36 277 1 2424 87 0 0 chr12 32931412 32931712 -111350777 - AluSq SINE Alu -13 300 1 1398 176 9 108 chr12 32931712 32931855 -111350634 - AluJb SINE Alu -206 96 1 1804 157 0 7 chr12 32931874 32932160 -111350329 - AluJb SINE Alu -18 294 11 450 0 0 0 chr12 32932164 32932214 -111350275 + (TATG)n Simple_repeat Simple_repeat 2 51 0 2052 134 0 0 chr12 32932214 32932498 -111349991 - AluSg SINE Alu -26 284 1 2181 108 3 3 chr12 32932502 32932798 -111349691 - AluSx SINE Alu -16 296 1 1933 130 11 3 chr12 32933468 32933752 -111348737 - AluSx SINE Alu -26 286 1 2324 71 0 0 chr12 32933768 32934081 -111348408 - AluSg SINE Alu 0 313 1 565 260 160 28 chr12 32934240 32934559 -111347930 + MLT1J LTR MaLR 151 511 0 1951 145 6 22 chr12 32934666 32934983 -111347506 + AluSx SINE Alu 1 312 0 2382 101 7 0 chr12 32934997 32935304 -111347185 + AluSx SINE Alu 1 309 -3 444 296 112 16 chr12 32935468 32935805 -111346684 - LTR16A LTR ERVL -6 444 24 2433 92 0 0 chr12 32936127 32936431 -111346058 - AluSq SINE Alu -9 304 1 817 164 8 0 chr12 32936460 32936588 -111345901 - FLAM_C SINE Alu -14 129 1 525 232 166 33 chr12 32936738 32936949 -111345540 + L1ME LINE L1 5446 5684 -437 609 290 50 27 chr12 32936950 32937040 -111345449 - MIR SINE MIR -17 245 159 1747 176 3 17 chr12 32937040 32937357 -111345132 - AluJo SINE Alu 0 312 1 609 290 50 27 chr12 32937357 32937487 -111345002 - MIR SINE MIR -103 159 20 2209 91 17 3 chr12 32937693 32937989 -111344500 - AluSp SINE Alu -13 300 1 2467 78 0 13 chr12 32937989 32938295 -111344194 - AluSc SINE Alu -7 302 1 1811 129 93 0 chr12 32938620 32938900 -111343589 - AluSx SINE Alu -6 306 1 2028 153 9 38 chr12 32938989 32939336 -111343153 - MER1B DNA MER1_type 0 337 1 1867 153 21 0 chr12 32939583 32939865 -111342624 - AluJb SINE Alu -20 292 5 551 169 0 0 chr12 32940759 32940848 -111341641 - FLAM_C SINE Alu -21 122 34 1820 149 9 41 chr12 32941190 32941303 -111341186 + AluJb SINE Alu 1 116 -196 1998 119 35 3 chr12 32941303 32941589 -111340900 + AluSg SINE Alu 1 295 -15 1820 149 9 41 chr12 32941589 32941790 -111340699 + AluJb SINE Alu 116 305 -7 1168 152 0 52 chr12 32942248 32942459 -111340030 - AluJo SINE Alu -31 281 82 2368 96 0 3 chr12 32942485 32942787 -111339702 - AluSp SINE Alu -10 303 3 2188 97 3 29 chr12 32942906 32943217 -111339272 - AluSx SINE Alu -9 303 1 535 123 0 0 chr12 32943388 32943461 -111339028 - AluSp SINE Alu -112 201 129 2235 99 0 3 chr12 32943467 32943777 -111338712 - AluSx SINE Alu 0 309 1 319 228 63 70 chr12 32943803 32944029 -111338460 + MER34B LTR ERV1 362 734 -53 2285 110 3 3 chr12 32944070 32944378 -111338111 + AluSx SINE Alu 1 308 -4 407 282 46 36 chr12 32945276 32945482 -111337007 - MIR SINE MIR -19 243 36 194 0 39 0 chr12 32945971 32945997 -111336492 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2289 107 0 22 chr12 32945999 32946317 -111336172 - AluSq SINE Alu -2 311 1 1997 100 52 0 chr12 32946336 32946607 -111335882 - AluSx SINE Alu -14 298 14 1585 215 26 0 chr12 32946956 32947258 -111335231 - AluJb SINE Alu -2 310 1 2408 97 3 0 chr12 32947267 32947575 -111334914 - AluSp SINE Alu -3 310 2 1387 295 105 51 chr12 32947577 32948649 -111333840 + L2 LINE L2 1929 3090 -223 814 163 0 0 chr12 32948649 32948778 -111333711 + FLAM_C SINE Alu 2 130 -3 1387 295 105 51 chr12 32948778 32949015 -111333474 + L2 LINE L2 3090 3313 0 2212 102 99 9 chr12 32949092 32949434 -111333055 + THE1C LTR MaLR 3 375 0 2361 104 3 0 chr12 32949505 32949812 -111332677 - AluSc SINE Alu -1 308 1 301 289 104 96 chr12 32950104 32950498 -111331991 - MLT1K LTR MaLR -10 578 182 1849 176 7 3 chr12 32950678 32950985 -111331504 + AluJb SINE Alu 1 308 -4 1141 140 0 0 chr12 32951152 32951323 -111331166 + AluSg/x SINE Alu 137 307 -5 2197 96 4 0 chr12 32951325 32951631 -111330858 + AluSg SINE Alu 1 307 0 1750 171 0 16 chr12 32952666 32952971 -111329518 + AluJo SINE Alu 1 300 -12 2252 92 3 0 chr12 32953130 32953423 -111329066 + AluSg SINE Alu 1 294 -16 302 303 33 25 chr12 32953878 32954000 -111328489 + MIR SINE MIR 67 189 -73 333 61 82 0 chr12 32954021 32954070 -111328419 - MADE1 DNA Mariner -27 53 1 678 256 18 0 chr12 32954127 32954295 -111328194 + FAM SINE Alu 1 171 -4 2409 70 3 0 chr12 32954447 32954772 -111327717 + AluSp SINE Alu 1 326 0 2158 127 10 0 chr12 32954831 32955130 -111327359 - AluSx SINE Alu -10 302 1 553 198 18 90 chr12 32955130 32955297 -111327192 - MER58B DNA MER1_type -6 335 181 1874 158 3 0 chr12 32955297 32955589 -111326900 - AluJb SINE Alu -19 293 1 1559 188 31 0 chr12 32955590 32955878 -111326611 - AluJb SINE Alu -15 297 1 384 244 71 0 chr12 32955908 32956035 -111326454 - L1ME4a LINE L1 -265 5856 5721 2284 96 0 0 chr12 32956070 32956361 -111326128 - AluSg SINE Alu -19 291 1 183 80 0 0 chr12 32956391 32956416 -111326073 + (A)n Simple_repeat Simple_repeat 1 25 0 1332 125 5 34 chr12 32956519 32956697 -111325792 - AluSg/x SINE Alu 0 306 134 210 37 0 0 chr12 32956707 32956734 -111325755 + (TG)n Simple_repeat Simple_repeat 2 28 0 2340 88 10 7 chr12 32956734 32957031 -111325458 - AluSg SINE Alu -9 301 1 1332 125 5 34 chr12 32957031 32957081 -111325408 - AluSg/x SINE Alu -172 134 84 2256 71 0 37 chr12 32957751 32958076 -111324413 - AluY SINE Alu 0 314 1 2083 85 53 7 chr12 32958273 32958556 -111323933 - AluSx SINE Alu -16 296 1 378 0 0 0 chr12 32959216 32959258 -111323231 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1697 156 0 35 chr12 32959265 32959553 -111322936 - AluJo SINE Alu -34 278 1 2254 104 0 13 chr12 32959589 32959898 -111322591 + AluSg1 SINE Alu 1 305 -4 1265 80 6 0 chr12 32959898 32960061 -111322428 + AluSp SINE Alu 134 297 -16 282 337 140 6 chr12 32960065 32960243 -111322246 - MIR SINE MIR -10 252 51 200 180 60 0 chr12 32961108 32961158 -111321331 + (CGTG)n Simple_repeat Simple_repeat 4 56 0 1551 260 71 31 chr12 32961570 32962103 -111320386 - MLT1F1 LTR MaLR -1 566 1 2180 105 0 40 chr12 32962383 32962708 -111319781 + AluSx SINE Alu 1 312 0 350 177 63 13 chr12 32962904 32962983 -111319506 + L2 LINE L2 3184 3266 -47 306 271 121 58 chr12 32963000 32963207 -111319282 - L2 LINE L2 -850 2464 2245 2187 110 3 0 chr12 32963558 32963858 -111318631 - AluSg SINE Alu -9 301 1 663 190 22 15 chr12 32963890 32964027 -111318462 - AluJb SINE Alu -39 273 136 2163 108 7 3 chr12 32964050 32964346 -111318143 + AluSq SINE Alu 1 297 -16 608 130 0 83 chr12 32964383 32964491 -111317998 + U6 snRNA snRNA 1 99 -8 836 168 0 0 chr12 32964491 32964628 -111317861 - AluSp/q SINE Alu -13 300 164 2409 92 7 10 chr12 32964854 32965160 -111317329 + AluSx SINE Alu 1 305 -7 257 217 67 0 chr12 32965390 32965450 -111317039 + MER116 DNA Mariner 1 64 -16 2399 54 7 0 chr12 32965452 32965765 -111316724 + AluSp SINE Alu 1 315 0 753 160 7 35 chr12 32965848 32965992 -111316497 - FLAM_C SINE Alu 0 143 4 302 256 17 43 chr12 32966140 32966257 -111316232 + L2 LINE L2 2183 2296 -1018 1893 162 0 3 chr12 32966369 32966665 -111315824 - AluJb SINE Alu -17 295 1 450 193 37 176 chr12 32966666 32966777 -111315712 + LTR41 LTR ERVL 506 631 -164 2199 105 0 19 chr12 32966777 32967092 -111315397 - AluSc SINE Alu 0 309 1 450 193 37 176 chr12 32967092 32967205 -111315284 + LTR41 LTR ERVL 631 758 -37 1807 172 45 55 chr12 32967205 32967312 -111315177 + MLT2D LTR ERVL 1 108 -306 2125 104 0 0 chr12 32967312 32967591 -111314898 - AluSg SINE Alu -9 301 23 1807 172 45 55 chr12 32967591 32967901 -111314588 + MLT2D LTR ERVL 108 414 0 2320 85 7 0 chr12 32967907 32968201 -111314288 - AluSg SINE Alu -14 296 1 450 193 37 176 chr12 32968201 32968281 -111314208 + LTR41 LTR ERVL 763 795 0 524 233 5 101 chr12 32968288 32968420 -111314069 + L2 LINE L2 2260 2370 -944 2352 105 0 6 chr12 32968420 32968734 -111313755 - AluSx SINE Alu 0 312 1 524 233 5 101 chr12 32968734 32968790 -111313699 + L2 LINE L2 2370 2430 -884 2090 144 3 0 chr12 32968868 32969174 -111313315 - AluSx SINE Alu -5 307 1 2185 92 7 0 chr12 32969188 32969461 -111313028 - AluSx SINE Alu -17 295 21 314 208 68 117 chr12 32969461 32969725 -111312764 - L1M4 LINE L1 -945 5201 4951 21 0 0 0 chr12 32970514 32970535 -111311954 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 32971097 32971118 -111311371 + AT_rich Low_complexity Low_complexity 1 21 0 890 302 80 32 chr12 32971621 32971813 -111310676 + MARNA DNA Mariner 14 195 -391 723 203 0 0 chr12 32971813 32971941 -111310548 - FLAM_A SINE Alu -2 131 4 890 302 80 32 chr12 32971941 32972275 -111310214 + MARNA DNA Mariner 195 565 -21 2096 104 3 44 chr12 32972385 32972702 -111309787 - AluSq SINE Alu -9 304 1 234 330 61 43 chr12 32972908 32973023 -111309466 + MIR3 SINE MIR 45 161 -47 2294 75 41 0 chr12 32973303 32973598 -111308891 - AluY SINE Alu -4 307 1 198 0 0 0 chr12 32975849 32975871 -111306618 + (T)n Simple_repeat Simple_repeat 1 22 0 363 265 53 63 chr12 32976542 32976731 -111305758 + MIR SINE MIR 2 188 -74 576 192 0 0 chr12 32976744 32976843 -111305646 + AluSg/x SINE Alu 207 305 -5 852 178 33 93 chr12 32977828 32977978 -111304511 + MER3 DNA MER1_type 9 144 -65 2252 102 10 0 chr12 32977978 32978273 -111304216 + AluSx SINE Alu 1 298 -14 852 178 33 93 chr12 32978273 32978336 -111304153 + MER3 DNA MER1_type 144 209 0 278 279 0 0 chr12 32978282 32978343 -111304146 - MER3 DNA MER1_type -108 101 41 * 739 263 90 47 chr12 32978346 32978363 -111304126 + L2 LINE L2 2694 2709 -604 1862 138 28 0 chr12 32978363 32978654 -111303835 + AluSx SINE Alu 1 299 -13 739 263 90 47 chr12 32978654 32979242 -111303247 + L2 LINE L2 2709 3312 -1 1045 133 0 48 chr12 32979287 32979452 -111303037 - AluJb SINE Alu -25 287 131 25 0 0 0 chr12 32979452 32979477 -111303012 + AT_rich Low_complexity Low_complexity 1 25 0 2391 106 0 0 chr12 32979481 32979782 -111302707 + AluSg SINE Alu 2 302 -8 275 272 39 19 chr12 32980518 32980621 -111301868 + MIR SINE MIR 47 151 -111 2257 103 0 7 chr12 32981310 32981611 -111300878 - AluSx SINE Alu -13 299 1 798 202 29 63 chr12 32982107 32982237 -111300252 - L1ME1 LINE L1 -24 6142 6022 2486 61 3 0 chr12 32982237 32982533 -111299956 - AluY SINE Alu -14 297 1 798 202 29 63 chr12 32982533 32982640 -111299849 - L1ME1 LINE L1 -144 6022 5913 1202 206 92 14 chr12 32982641 32982933 -111299556 - L1ME1 LINE L1 -383 5783 5469 1943 124 4 0 chr12 32982933 32983206 -111299283 + AluSq SINE Alu 1 274 -39 242 0 61 0 chr12 32983213 32983246 -111299243 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 658 210 65 84 chr12 32983464 32983678 -111298811 - MLT1D LTR MaLR -10 495 286 1945 105 0 34 chr12 32983678 32983945 -111298544 - AluSx SINE Alu -9 303 46 180 0 0 0 chr12 32983963 32983983 -111298506 + (TTG)n Simple_repeat Simple_repeat 2 21 0 742 90 0 45 chr12 32984011 32984122 -111298367 + U6 snRNA snRNA 2 107 0 1706 148 4 19 chr12 32984257 32984514 -111297975 - AluSx SINE Alu -31 281 29 567 250 65 24 chr12 32984514 32984682 -111297807 - MLT1D LTR MaLR -328 177 3 2266 114 0 3 chr12 32984887 32985193 -111297296 + AluSg SINE Alu 1 305 -5 1846 172 7 0 chr12 32985264 32985555 -111296934 + AluJb SINE Alu 1 293 -19 21 0 0 0 chr12 32986003 32986024 -111296465 + AT_rich Low_complexity Low_complexity 1 21 0 1238 164 16 0 chr12 32986039 32986222 -111296267 - AluJo SINE Alu -126 186 1 2393 63 30 0 chr12 32986771 32987070 -111295419 + AluY SINE Alu 4 311 0 2176 119 7 0 chr12 32987143 32987446 -111295043 + AluSx SINE Alu 1 305 -7 2584 37 0 7 chr12 32988289 32988588 -111293901 - AluY SINE Alu -14 297 1 645 216 0 8 chr12 32988883 32989017 -111293472 + FLAM_A SINE Alu 1 133 0 2471 69 7 7 chr12 32989886 32990192 -111292297 - AluY SINE Alu -5 306 1 488 226 0 0 chr12 32990331 32990433 -111292056 + U13 snRNA snRNA 1 102 -2 1686 181 17 0 chr12 32990527 32990820 -111291669 - AluJb SINE Alu -14 298 1 2433 81 0 3 chr12 32991480 32991788 -111290701 - AluSg SINE Alu -3 307 1 22 56 0 0 chr12 32992028 32992064 -111290425 + AT_rich Low_complexity Low_complexity 1 36 0 739 185 15 0 chr12 32992710 32992840 -111289649 + FLAM_C SINE Alu 2 133 0 26 30 0 0 chr12 32993510 32993543 -111288946 + AT_rich Low_complexity Low_complexity 1 33 0 2195 119 3 7 chr12 32994025 32994327 -111288162 + AluSx SINE Alu 1 301 -11 276 261 15 0 chr12 32994386 32994451 -111288038 - MIR3 SINE MIR -45 163 98 2108 130 0 7 chr12 32994607 32994908 -111287581 - AluSg1 SINE Alu -10 299 1 2578 59 0 7 chr12 32994978 32995285 -111287204 - AluY SINE Alu -6 305 1 2137 131 3 0 chr12 32995905 32996211 -111286278 + AluSg SINE Alu 1 307 -3 2281 119 0 0 chr12 32996213 32996515 -111285974 + AluSx SINE Alu 1 302 -10 1584 174 45 17 chr12 32996969 32997257 -111285232 + AluJo SINE Alu 1 296 -16 2592 52 0 3 chr12 32997874 32998179 -111284310 - AluY SINE Alu -7 304 1 2227 97 33 0 chr12 32999096 32999396 -111283093 + AluSp SINE Alu 1 310 -3 2008 118 13 20 chr12 32999454 32999758 -111282731 - AluSc SINE Alu -7 302 1 2169 112 3 0 chr12 33000904 33001191 -111281298 - AluSq SINE Alu -25 288 1 599 91 23 0 chr12 33001243 33001331 -111281158 - AluSg/x SINE Alu -8 301 212 994 224 112 10 chr12 33001649 33001953 -111280536 - MER46C DNA MER2_type -3 335 1 2260 118 10 0 chr12 33002842 33003146 -111279343 + AluSq SINE Alu 1 307 -6 1925 148 13 10 chr12 33003146 33003455 -111279034 + AluSx SINE Alu 1 311 -1 285 344 42 0 chr12 33003576 33003672 -111278817 + L2 LINE L2 3173 3272 0 2169 100 0 23 chr12 33003834 33004134 -111278355 - AluSq SINE Alu -20 293 1 207 299 250 20 chr12 33004347 33004551 -111277938 + L2 LINE L2 2804 3054 -218 2058 123 3 16 chr12 33004719 33005029 -111277460 - AluSx SINE Alu -4 308 3 2118 117 10 0 chr12 33005540 33005831 -111276658 - AluSx SINE Alu -18 294 1 671 277 52 60 chr12 33006139 33006244 -111276245 + L1MEc LINE L1 1058 1162 -5234 2158 105 18 0 chr12 33006244 33006529 -111275960 + AluSc SINE Alu 1 290 -19 671 277 52 60 chr12 33006529 33006577 -111275912 + L1MEc LINE L1 1162 1209 -5187 2232 131 0 0 chr12 33006577 33006889 -111275600 + AluSx SINE Alu 1 312 0 671 277 52 60 chr12 33006889 33007274 -111275215 + L1MEc LINE L1 1209 1616 -4780 335 308 10 39 chr12 33007280 33007384 -111275105 + L1MEc LINE L1 1545 1645 -4751 1608 127 68 55 chr12 33007509 33007801 -111274688 + AluJo SINE Alu 1 296 -16 1779 168 3 3 chr12 33008138 33008423 -111274066 + AluJo SINE Alu 1 285 -27 198 0 0 0 chr12 33008423 33008445 -111274044 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 312 224 0 0 chr12 33008445 33008512 -111273977 + L1MEc LINE L1 2998 3064 -3151 416 275 55 44 chr12 33008547 33008691 -111273798 + L1MEc LINE L1 3151 3292 -2923 1756 176 0 16 chr12 33008691 33008998 -111273491 + AluJb SINE Alu 1 302 -10 416 275 55 44 chr12 33008998 33009217 -111273272 + L1MEc LINE L1 3292 3518 -2697 2132 124 10 0 chr12 33009220 33009527 -111272962 + AluSx SINE Alu 1 310 -2 649 231 99 58 chr12 33009544 33009786 -111272703 + MER21B LTR ERV1 329 580 -283 1680 144 133 32 chr12 33009840 33010120 -111272369 + MSTB1 LTR MaLR 51 374 -58 1844 159 7 3 chr12 33010120 33010278 -111272211 - AluJb SINE Alu -16 296 135 2308 93 10 0 chr12 33010278 33010580 -111271909 - AluSp SINE Alu -8 305 1 1844 159 7 3 chr12 33010580 33010716 -111271773 - AluJb SINE Alu -177 135 1 1680 144 133 32 chr12 33010716 33010782 -111271707 + MSTB1 LTR MaLR 374 432 0 447 248 174 6 chr12 33010795 33010956 -111271533 + MER21B LTR ERV1 614 801 -62 2181 186 30 2 chr12 33010961 33011360 -111271129 + MER21B-int LTR ERV1 18 427 -3764 473 229 17 8 chr12 33011368 33011486 -111271003 - MER21-int LTR ERV1 -3657 534 416 1219 154 84 22 chr12 33011486 33011713 -111270776 - AluSx SINE Alu -17 295 55 456 74 0 0 chr12 33011722 33011776 -111270713 - AluSq/x SINE Alu -193 119 66 4854 241 93 70 chr12 33011779 33012470 -111270019 + MER21B-int LTR ERV1 505 1179 -3012 2107 128 0 0 chr12 33012470 33012758 -111269731 - AluSx SINE Alu -24 288 1 4854 241 93 70 chr12 33012758 33013125 -111269364 + MER21B-int LTR ERV1 1179 1536 -2655 1765 159 7 0 chr12 33013125 33013396 -111269093 - AluJb SINE Alu -31 281 9 4854 241 93 70 chr12 33013396 33014184 -111268305 + MER21B-int LTR ERV1 1536 2394 -1797 459 287 83 33 chr12 33015149 33015330 -111267159 + MIR SINE MIR 1 190 -72 1791 180 0 3 chr12 33015640 33015935 -111266554 + AluJo SINE Alu 9 302 -10 2297 112 0 6 chr12 33016008 33016322 -111266167 + AluSx SINE Alu 1 312 0 428 313 27 80 chr12 33016577 33016801 -111265688 - MIR SINE MIR -33 229 18 994 181 11 28 chr12 33016801 33016978 -111265511 + FAM SINE Alu 2 175 0 2301 98 0 3 chr12 33017113 33017408 -111265081 + AluSg SINE Alu 1 294 -16 25 31 0 0 chr12 33018222 33018254 -111264235 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr12 33018471 33018500 -111263989 + AT_rich Low_complexity Low_complexity 1 29 0 1552 184 21 7 chr12 33018593 33018876 -111263613 + AluJb SINE Alu 5 291 -21 300 257 37 46 chr12 33020668 33020777 -111261712 + MIR SINE MIR 32 139 -69 607 275 144 45 chr12 33021451 33021977 -111260512 - L2 LINE L2 -1 3271 2711 354 293 28 9 chr12 33022244 33022350 -111260139 + L2 LINE L2 440 547 -2767 1203 222 102 177 chr12 33022369 33022741 -111259748 + L2 LINE L2 2153 2551 -762 834 181 0 0 chr12 33022741 33022874 -111259615 - FRAM SINE Alu -8 168 36 1203 222 102 177 chr12 33022874 33023289 -111259200 + L2 LINE L2 2551 3000 -313 382 281 116 0 chr12 33023293 33023414 -111259075 + MLT1G LTR MaLR 20 154 -441 * 775 209 148 5 chr12 33023412 33023510 -111258979 - MER58A DNA MER1_type -2196 224 141 9647 91 15 28 chr12 33023510 33023609 -111258880 + HSMAR1 DNA Mariner 1 100 -1187 2196 109 3 0 chr12 33023609 33023902 -111258587 - AluSg SINE Alu -14 296 3 9647 91 15 28 chr12 33023902 33024019 -111258470 + HSMAR1 DNA Mariner 100 217 -1070 2182 100 40 3 chr12 33024019 33024320 -111258169 - AluSx SINE Alu 0 312 1 9647 91 15 28 chr12 33024320 33024688 -111257801 + HSMAR1 DNA Mariner 217 588 -699 1955 122 14 4 chr12 33024688 33025005 -111257484 + AluSx SINE Alu 1 320 0 9647 91 15 28 chr12 33025005 33025719 -111256770 + HSMAR1 DNA Mariner 588 1285 -2 775 209 148 5 chr12 33025719 33025816 -111256673 - MER58A DNA MER1_type -2279 141 1 560 280 139 15 chr12 33025825 33025903 -111256586 + MLT1G LTR MaLR 110 177 -418 234 0 0 0 chr12 33025903 33025929 -111256560 + (TC)n Simple_repeat Simple_repeat 2 27 0 560 280 139 15 chr12 33025929 33026219 -111256270 + MLT1G LTR MaLR 177 547 -48 830 261 22 35 chr12 33026219 33026242 -111256247 + MER58A DNA MER1_type 1 23 -2397 1397 216 18 85 chr12 33026242 33026631 -111255858 + MLT1A1 LTR MaLR 1 363 -2 830 261 22 35 chr12 33026631 33026833 -111255656 + MER58A DNA MER1_type 23 223 -1 220 364 30 10 chr12 33026893 33026992 -111255497 + L2 LINE L2 2995 3095 -218 1910 150 6 13 chr12 33027582 33027896 -111254593 + AluSx SINE Alu 1 312 0 189 174 304 0 chr12 33027999 33028045 -111254444 + L2 LINE L2 3213 3272 0 1877 135 3 63 chr12 33028121 33028439 -111254050 - AluSx SINE Alu -11 301 3 241 328 0 0 chr12 33029252 33029310 -111253179 + Tigger3(Golem) DNA MER2_type 1 58 -2971 764 144 23 45 chr12 33029312 33029444 -111253045 + Tigger3(Golem) DNA MER2_type 2877 3005 -24 207 161 0 0 chr12 33029444 33029475 -111253014 + polypyrimidine Low_complexity Low_complexity 2 32 0 305 382 27 9 chr12 33029476 33029586 -111252903 - L2 LINE L2 -25 3247 3136 434 325 149 35 chr12 33029752 33030403 -111252086 - L2 LINE L2 -1 3312 2291 1855 169 3 0 chr12 33030496 33030792 -111251697 + AluJb SINE Alu 1 297 -15 1569 136 21 4 chr12 33031379 33031622 -111250867 + AluSx SINE Alu 43 289 -23 237 117 50 17 chr12 33031684 33031744 -111250745 + GA-rich Low_complexity Low_complexity 4 65 0 689 205 0 8 chr12 33032589 33032716 -111249773 - AluJo SINE Alu -102 210 85 204 320 97 19 chr12 33033316 33033419 -111249070 + MIR3 SINE MIR 3 113 -95 1023 104 0 0 chr12 33033578 33033712 -111248777 + AluSq/x SINE Alu 1 134 -178 2028 139 7 7 chr12 33033713 33034022 -111248467 + AluSx SINE Alu 1 309 -3 634 137 8 16 chr12 33034291 33034415 -111248074 + (TCTA)n Simple_repeat Simple_repeat 1 123 0 653 228 0 0 chr12 33034415 33034529 -111247960 - FLAM_A SINE Alu -23 119 6 4549 103 44 8 chr12 33034570 33035182 -111247307 + MER51A LTR ERV1 1 634 0 317 285 16 41 chr12 33035449 33035535 -111246954 + MIR SINE MIR 72 156 -106 2507 81 10 0 chr12 33035535 33035844 -111246645 - AluSx SINE Alu 0 312 1 317 285 16 41 chr12 33035844 33035880 -111246609 + MIR SINE MIR 156 191 -71 868 137 0 0 chr12 33036750 33036867 -111245622 + FLAM_C SINE Alu 1 117 -26 29 0 0 0 chr12 33036875 33036904 -111245585 + AT_rich Low_complexity Low_complexity 1 29 0 597 102 204 0 chr12 33037825 33037913 -111244576 + AluSg SINE Alu 9 114 -196 560 154 11 33 chr12 33037929 33038111 -111244378 + G-rich Low_complexity Low_complexity 1 178 0 183 80 0 0 chr12 33038126 33038151 -111244338 + (GAAAA)n Simple_repeat Simple_repeat 5 29 0 2255 124 0 0 chr12 33038835 33039141 -111243348 + AluSx SINE Alu 1 306 -6 1135 132 198 5 chr12 33040153 33040350 -111242139 - MER46A DNA MER2_type 0 236 2 476 164 14 0 chr12 33040420 33040493 -111241996 - MER46A DNA MER2_type -161 75 2 321 190 0 17 chr12 33040446 33040504 -111241985 + MER46A DNA MER2_type 97 153 -83 * 1983 159 7 0 chr12 33040543 33040838 -111241651 + AluSx SINE Alu 1 297 -15 968 212 11 0 chr12 33040848 33041027 -111241462 + L1MC/D LINE L1 5444 5624 -2161 * 1730 146 81 68 chr12 33041010 33041218 -111241271 + L1MC3 LINE L1 7339 7543 -242 2818 116 11 3 chr12 33041218 33041590 -111240899 + THE1C LTR MaLR 1 375 0 1730 146 81 68 chr12 33041590 33041626 -111240863 + L1MC3 LINE L1 7543 7577 -208 2274 116 3 0 chr12 33041626 33041937 -111240552 + AluSq SINE Alu 1 312 -1 1730 146 81 68 chr12 33041937 33042101 -111240388 + L1MC3 LINE L1 7577 7753 -32 2383 86 7 0 chr12 33042170 33042473 -111240016 + AluSg SINE Alu 2 306 -4 1831 153 32 0 chr12 33043412 33043693 -111238796 + AluJb SINE Alu 1 290 -22 453 267 184 24 chr12 33044929 33045209 -111237280 + MLT1J1 LTR MaLR 99 428 -18 2107 128 10 3 chr12 33045375 33045672 -111236817 - AluSx SINE Alu -13 299 1 198 0 0 0 chr12 33045955 33045977 -111236512 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1670 171 11 18 chr12 33045978 33046264 -111236225 - AluJb SINE Alu -23 289 6 29 0 0 0 chr12 33046410 33046439 -111236050 + AT_rich Low_complexity Low_complexity 1 29 0 831 69 0 0 chr12 33046439 33046540 -111235949 - HY3 scRNA scRNA 0 101 1 1586 273 83 57 chr12 33046615 33047315 -111235174 - MER21B LTR ERV1 -129 734 17 936 210 194 24 chr12 33047318 33047570 -111234919 - AluJo SINE Alu -7 295 1 207 299 37 52 chr12 33049274 33049408 -111233081 + L2 LINE L2 2264 2395 -919 359 178 0 0 chr12 33049469 33049528 -111232961 + Alu SINE Alu 1 53 -255 667 200 82 7 chr12 33049558 33049693 -111232796 + FRAM SINE Alu 20 164 -12 341 186 0 29 chr12 33049700 33049770 -111232719 + MLT1G1 LTR MaLR 486 593 -2 508 256 111 56 chr12 33049772 33050006 -111232483 - L2 LINE L2 -71 3242 2996 754 241 21 21 chr12 33050248 33050435 -111232054 - MLT1E2 LTR MaLR 0 654 468 1132 148 0 0 chr12 33050450 33050619 -111231870 - AluSg/x SINE Alu -10 300 132 1137 224 111 28 chr12 33050619 33051028 -111231461 - MLT1E2 LTR MaLR -185 439 1 1989 125 3 30 chr12 33051085 33051388 -111231101 + AluJo SINE Alu 1 295 -17 229 230 176 54 chr12 33051821 33051895 -111230594 + L2 LINE L2 3190 3272 0 22 56 0 0 chr12 33052004 33052040 -111230449 + AT_rich Low_complexity Low_complexity 1 36 0 2330 83 24 0 chr12 33052057 33052347 -111230142 - AluSg SINE Alu -8 302 6 1578 180 0 49 chr12 33052361 33052666 -111229823 - AluJo SINE Alu -22 290 1 3786 136 156 113 chr12 33052893 33053466 -111229023 - L1MC3 LINE L1 0 7785 7238 231 319 0 32 chr12 33053466 33053560 -111228929 - MLT1F1 LTR MaLR -442 125 35 3786 136 156 113 chr12 33053560 33053973 -111228516 - L1MC3 LINE L1 -547 7238 6656 1888 149 0 33 chr12 33053973 33054275 -111228214 - AluJo SINE Alu -14 298 7 807 224 0 7 chr12 33054368 33054520 -111227969 + Tigger3(Golem) DNA MER2_type 2866 3016 -13 2104 122 3 23 chr12 33054669 33054972 -111227517 + AluSx SINE Alu 1 297 -15 1535 174 60 28 chr12 33054987 33055269 -111227220 + AluJo SINE Alu 3 293 -19 935 187 0 0 chr12 33055294 33055444 -111227045 + FRAM SINE Alu 1 150 -16 21 82 0 0 chr12 33055473 33055522 -111226967 + AT_rich Low_complexity Low_complexity 1 49 0 1689 165 31 21 chr12 33056338 33056629 -111225860 + AluJb SINE Alu 5 298 -14 932 179 0 34 chr12 33056912 33057091 -111225398 + AluJb SINE Alu 129 301 -11 294 267 91 79 chr12 33058386 33058551 -111223938 - MIR3 SINE MIR -11 197 31 995 108 6 18 chr12 33059911 33060077 -111222412 - L1MB7 LINE L1 -8 6176 6013 832 196 139 18 chr12 33060624 33060676 -111221813 - MER33 DNA MER1_type -2273 312 268 2134 99 3 7 chr12 33060676 33060959 -111221530 - AluSc SINE Alu -16 293 12 832 196 139 18 chr12 33060959 33060974 -111221515 - MER33 DNA MER1_type -2317 268 256 219 36 0 0 chr12 33060974 33061002 -111221487 + (CAA)n Simple_repeat Simple_repeat 2 29 0 832 196 139 18 chr12 33061002 33061222 -111221267 - MER33 DNA MER1_type -2329 256 1 748 159 0 36 chr12 33061443 33061581 -111220908 - FLAM_A SINE Alu 0 133 1 381 353 160 12 chr12 33061888 33062347 -111220142 + L2 LINE L2 2565 3087 -185 1398 161 43 18 chr12 33062588 33062867 -111219622 - AluJb SINE Alu -26 286 1 2071 143 0 16 chr12 33063179 33063493 -111218996 - AluSx SINE Alu -3 309 1 534 179 0 0 chr12 33063750 33063845 -111218644 + L1MB5 LINE L1 6080 6174 0 207 0 0 0 chr12 33064170 33064193 -111218296 + (T)n Simple_repeat Simple_repeat 1 23 0 418 235 91 30 chr12 33064350 33064482 -111218007 + MLT1H LTR MaLR 101 240 -309 2088 106 0 11 chr12 33064500 33064782 -111217707 + AluSx SINE Alu 1 279 -33 198 174 0 0 chr12 33064816 33064862 -111217627 + A-rich Low_complexity Low_complexity 1 46 0 1598 233 119 8 chr12 33065064 33065661 -111216828 + L1MD3 LINE L1 5343 6005 -1990 * 2087 173 69 12 chr12 33065321 33065829 -111216660 + L1MB8 LINE L1 5642 6178 0 1641 186 3 10 chr12 33065839 33066130 -111216359 + AluJb SINE Alu 1 289 -23 1612 144 18 0 chr12 33066726 33067003 -111215486 + L1MD3 LINE L1 7697 7978 -17 949 275 153 43 chr12 33067064 33067627 -111214862 - L2 LINE L2 0 3313 2690 2340 95 0 0 chr12 33067627 33067921 -111214568 + AluSg SINE Alu 1 294 -16 949 275 153 43 chr12 33067921 33067951 -111214538 - L2 LINE L2 -623 2690 2665 545 242 21 48 chr12 33067956 33068193 -111214296 + L1MC4 LINE L1 7363 7614 -207 1244 216 145 28 chr12 33068193 33068620 -111213869 - MLT1D LTR MaLR 0 505 29 1159 262 92 52 chr12 33068620 33069009 -111213480 - L2 LINE L2 -701 2613 2204 2283 93 6 6 chr12 33069009 33069321 -111213168 + AluSq SINE Alu 1 312 -1 1159 262 92 52 chr12 33069321 33069354 -111213135 - L2 LINE L2 -1110 2204 2174 891 114 76 0 chr12 33069683 33069814 -111212675 + AluJb SINE Alu 1 141 -171 47 0 0 0 chr12 33069831 33069878 -111212611 + AT_rich Low_complexity Low_complexity 1 47 0 2391 86 0 0 chr12 33070219 33070521 -111211968 + AluSx SINE Alu 1 302 -10 24 0 0 0 chr12 33070739 33070763 -111211726 + AT_rich Low_complexity Low_complexity 1 24 0 2261 99 13 0 chr12 33071321 33071624 -111210865 - AluSx SINE Alu -5 307 1 234 233 45 68 chr12 33072131 33072264 -111210225 - L2 LINE L2 -67 3246 3117 349 332 103 49 chr12 33072620 33072969 -111209520 - L2 LINE L2 -609 2705 2338 390 242 96 35 chr12 33073310 33073508 -111208981 - MER2 DNA MER2_type 0 345 136 1833 104 0 69 chr12 33074285 33074573 -111207916 - AluSx SINE Alu -9 303 36 1265 126 0 0 chr12 33075052 33075227 -111207262 + AluSg/x SINE Alu 131 305 -5 13429 134 40 34 chr12 33075425 33075534 -111206955 + L1MA3 LINE L1 1666 1773 -5951 330 87 0 0 chr12 33075534 33075580 -111206909 + (CA)n Simple_repeat Simple_repeat 2 47 0 13429 134 40 34 chr12 33075580 33075970 -111206519 + L1MA3 LINE L1 1773 2159 -5565 2432 135 41 12 chr12 33075970 33076386 -111206103 + MSTA LTR MaLR 1 428 0 13429 134 40 34 chr12 33076386 33078709 -111203780 + L1MA3 LINE L1 2159 4468 -3256 2206 125 0 6 chr12 33078709 33079020 -111203469 + AluSx SINE Alu 1 309 -3 13429 134 40 34 chr12 33079020 33080496 -111201993 + L1MA3 LINE L1 4468 5934 -1790 1936 149 0 0 chr12 33080496 33080778 -111201711 + AluSx SINE Alu 1 282 -30 13429 134 40 34 chr12 33080778 33082130 -111200359 + L1MA3 LINE L1 5934 7371 -353 2380 90 0 7 chr12 33082130 33082430 -111200059 + AluSg SINE Alu 1 298 -12 13429 134 40 34 chr12 33082430 33082785 -111199704 + L1MA3 LINE L1 7371 7723 -1 1672 174 3 7 chr12 33082802 33083084 -111199405 + AluJb SINE Alu 5 285 -27 1105 151 0 49 chr12 33083153 33083338 -111199151 + AluJb SINE Alu 113 288 -24 2047 121 21 0 chr12 33084012 33084292 -111198197 + AluSx SINE Alu 1 286 -26 21 104 0 0 chr12 33084302 33084379 -111198110 + AT_rich Low_complexity Low_complexity 1 77 0 1869 162 0 10 chr12 33084413 33084709 -111197780 - AluJb SINE Alu -19 293 1 331 248 51 29 chr12 33084736 33084873 -111197616 + L1ME4a LINE L1 5093 5232 -914 326 239 44 57 chr12 33084876 33085151 -111197338 + L1MC5 LINE L1 7261 7498 -463 1559 136 31 8 chr12 33085358 33085616 -111196873 - L1PA16 LINE L1 -2 6164 5901 388 268 106 68 chr12 33085646 33085796 -111196693 + L1ME4a LINE L1 5751 5894 -227 1735 160 30 20 chr12 33085796 33086096 -111196393 + AluJb SINE Alu 1 303 -9 388 268 106 68 chr12 33086096 33086266 -111196223 + L1ME4a LINE L1 5894 6083 -38 2266 94 3 0 chr12 33086529 33086816 -111195673 + AluSx SINE Alu 1 288 -24 364 229 0 0 chr12 33087344 33087427 -111195062 - L1MC5 LINE L1 -72 7889 7807 2136 117 21 0 chr12 33087528 33087819 -111194670 - AluSg SINE Alu -13 297 1 2199 107 3 3 chr12 33087832 33088130 -111194359 - AluSq SINE Alu -15 298 1 25 0 0 0 chr12 33088177 33088202 -111194287 + AT_rich Low_complexity Low_complexity 1 25 0 1748 174 33 10 chr12 33088234 33088539 -111193950 + AluJb SINE Alu 1 312 0 1586 189 3 20 chr12 33089023 33089324 -111193165 - AluJo SINE Alu -16 296 1 22 70 0 0 chr12 33089509 33089552 -111192937 + AT_rich Low_complexity Low_complexity 1 43 0 1348 108 0 4 chr12 33089653 33089664 -111192825 - L1P4 LINE L1 -391 5777 5767 2250 87 10 6 chr12 33089664 33089975 -111192514 - L1PA10 LINE L1 -4 6164 5853 1348 108 0 4 chr12 33089975 33090178 -111192311 - L1P4 LINE L1 -401 5767 5570 42502 33 5 2 chr12 33090191 33096330 -111186159 - L1PA4 LINE L1 -3 6152 1 2052 139 10 0 chr12 33096331 33096626 -111185863 - AluSx SINE Alu -14 298 1 426 107 0 0 chr12 33096721 33096777 -111185712 + FLAM SINE Alu 63 118 -25 21 0 0 0 chr12 33096783 33096804 -111185685 + AT_rich Low_complexity Low_complexity 1 21 0 453 296 36 0 chr12 33096947 33097143 -111185346 + L1ME LINE L1 5572 5774 -347 258 315 34 0 chr12 33097333 33097482 -111185007 + HAL1b LINE L1 1193 1346 -2 1592 131 0 13 chr12 33097502 33097731 -111184758 - AluJb SINE Alu -11 301 76 207 0 0 0 chr12 33097939 33097962 -111184527 + (A)n Simple_repeat Simple_repeat 1 23 0 742 167 97 14 chr12 33098041 33098185 -111184304 + FRAM SINE Alu 1 156 -10 2486 235 92 47 chr12 33100117 33101054 -111181435 + L2 LINE L2 2111 3088 -225 736 191 0 0 chr12 33101467 33101582 -111180907 + FLAM_A SINE Alu 1 115 -18 274 193 70 0 chr12 33101836 33101893 -111180596 - L2 LINE L2 -4 3268 3208 286 236 11 45 chr12 33102037 33102126 -111180363 - L2 LINE L2 -2 3311 3226 22 0 0 0 chr12 33102429 33102451 -111180038 + AT_rich Low_complexity Low_complexity 1 22 0 1981 105 3 18 chr12 33102452 33102738 -111179751 + AluSp SINE Alu 1 282 -31 252 59 0 0 chr12 33102742 33102776 -111179713 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr12 33103774 33103798 -111178691 + AT_rich Low_complexity Low_complexity 1 24 0 2005 161 0 3 chr12 33103959 33104258 -111178231 + AluSx SINE Alu 1 298 -14 1818 145 3 0 chr12 33104686 33105012 -111177477 - AluJb SINE Alu 0 327 1 356 164 16 0 chr12 33105157 33105218 -111177271 + MLT1F LTR MaLR 1 62 -480 1257 183 62 5 chr12 33105249 33105473 -111177016 + AluJb SINE Alu 1 237 -75 287 258 106 68 chr12 33105822 33105954 -111176535 + MIR SINE MIR 15 146 -62 1755 172 0 23 chr12 33105984 33106287 -111176202 + AluJb SINE Alu 1 296 -16 989 201 0 0 chr12 33106298 33106462 -111176027 + FAM SINE Alu 1 164 -11 297 0 0 0 chr12 33106463 33106496 -111175993 + (TG)n Simple_repeat Simple_repeat 2 34 0 698 167 0 0 chr12 33106612 33106732 -111175757 + FLAM_C SINE Alu 2 121 -22 26 30 0 0 chr12 33106732 33106765 -111175724 + AT_rich Low_complexity Low_complexity 1 33 0 501 196 0 0 chr12 33106997 33107089 -111175400 + AluSg/x SINE Alu 130 221 -91 603 152 0 19 chr12 33107157 33107262 -111175227 + MER65A LTR ERV1 343 445 0 1097 163 0 0 chr12 33107292 33107458 -111175031 + AluJb SINE Alu 133 298 -14 675 79 0 0 chr12 33107582 33107671 -111174818 + AluSg/x SINE Alu 211 299 -10 289 339 0 16 chr12 33107671 33107798 -111174691 + L2 LINE L2 2623 2747 -567 941 161 0 25 chr12 33107798 33107959 -111174530 + FRAM SINE Alu 10 166 -10 762 127 8 45 chr12 33107993 33108127 -111174362 - FLAM_C SINE Alu -13 130 2 1889 132 132 0 chr12 33108186 33108505 -111173984 + MER46B DNA MER2_type 1 236 0 682 187 8 37 chr12 33109043 33109177 -111173312 - FLAM_A SINE Alu -3 130 1 1811 159 20 10 chr12 33109185 33109487 -111173002 - AluJb SINE Alu -7 305 1 1888 158 3 14 chr12 33109651 33109942 -111172547 + AluSx SINE Alu 1 288 -24 2223 107 0 19 chr12 33110037 33110354 -111172135 + AluY SINE Alu 1 311 0 670 213 15 84 chr12 33110848 33111121 -111171368 + LTR34 LTR ERV1 446 699 0 236 261 0 45 chr12 33111121 33111209 -111171280 + L1MA9 LINE L1 6229 6312 0 304 337 32 21 chr12 33111898 33112088 -111170401 + L2 LINE L2 2550 2741 -573 464 269 103 17 chr12 33112141 33112316 -111170173 - MIR SINE MIR -2 260 71 2398 98 0 0 chr12 33112727 33113032 -111169457 + AluSg SINE Alu 1 305 -5 25 0 0 0 chr12 33114142 33114167 -111168322 + AT_rich Low_complexity Low_complexity 1 25 0 289 250 0 0 chr12 33114167 33114235 -111168254 + L2 LINE L2 3178 3245 -27 26 74 0 0 chr12 33114395 33114449 -111168040 + GC_rich Low_complexity Low_complexity 1 54 0 341 233 187 99 chr12 33115023 33115082 -111167407 + MER102b DNA MER1_type 56 108 -1320 2311 65 16 56 chr12 33115082 33115404 -111167085 + AluSx SINE Alu 1 309 -3 341 233 187 99 chr12 33115404 33115606 -111166883 + MER102b DNA MER1_type 108 340 -1 201 319 0 0 chr12 33116051 33116098 -111166391 + L2 LINE L2 3162 3208 -64 * 253 150 33 33 chr12 33116091 33116151 -111166338 + L2 LINE L2 3179 3238 -75 1086 181 0 46 chr12 33116261 33116477 -111166012 - MER2 DNA MER2_type -139 206 1 2147 80 62 3 chr12 33116685 33116974 -111165515 - AluSq SINE Alu -7 306 1 338 136 150 23 chr12 33117545 33117679 -111164810 + AluJb SINE Alu 114 298 -4 603 167 125 17 chr12 33117724 33117844 -111164645 - FLAM_C SINE Alu 0 133 1 600 189 0 9 chr12 33118203 33118309 -111164180 + AluJo/FLAM SINE Alu 21 125 -187 2406 75 0 0 chr12 33118312 33118606 -111163883 - AluSg SINE Alu -16 294 1 1129 69 0 0 chr12 33118609 33118740 -111163749 - AluSq/x SINE Alu -181 132 2 253 83 125 42 chr12 33118740 33118788 -111163701 + Charlie8 DNA MER1_type 207 258 -2159 645 229 66 6 chr12 33118806 33118972 -111163517 - MER51D LTR ERV1 -21 636 461 609 183 131 22 chr12 33119682 33119819 -111162670 - LTR34 LTR ERV1 0 699 548 2321 93 10 3 chr12 33119819 33120130 -111162359 - AluSq SINE Alu 0 313 1 1968 155 3 3 chr12 33120143 33120453 -111162036 - AluJb SINE Alu -2 310 1 1109 102 0 7 chr12 33120726 33120873 -111161616 - AluSq/x SINE Alu -164 148 3 566 226 9 0 chr12 33120875 33120990 -111161499 - MLT2B1 LTR ERVL -404 116 1 1576 146 3 93 chr12 33121185 33121506 -111160983 - AluJb SINE Alu -20 292 1 216 0 0 0 chr12 33121506 33121530 -111160959 + (T)n Simple_repeat Simple_repeat 1 24 0 442 238 79 38 chr12 33121574 33121810 -111160679 + MIR SINE MIR 9 248 -14 1884 153 0 0 chr12 33122435 33122750 -111159739 - AluSx SINE Alu 0 315 1 1273 189 5 0 chr12 33122750 33122972 -111159517 - AluJb SINE Alu -5 307 85 632 171 23 54 chr12 33122972 33123101 -111159388 - AluJo SINE Alu -177 135 11 533 267 39 17 chr12 33123512 33123692 -111158797 + MIR SINE MIR 14 197 -65 2123 105 0 10 chr12 33123704 33124000 -111158489 + AluSx SINE Alu 20 312 0 2001 157 6 14 chr12 33124001 33124346 -111158143 + L1MB8 LINE L1 5488 5829 -355 756 171 171 0 chr12 33124346 33124498 -111157991 + MER2 DNA MER2_type 1 178 -167 2303 93 0 35 chr12 33124500 33124693 -111157796 - AluSg SINE Alu -11 299 120 2500 68 7 0 chr12 33124693 33125000 -111157489 - AluY SINE Alu -2 309 1 2303 93 0 35 chr12 33125000 33125116 -111157373 - AluSg SINE Alu -190 120 1 1103 105 149 6 chr12 33125126 33125307 -111157182 - AluSg/x SINE Alu -21 289 83 848 126 86 26 chr12 33125307 33125458 -111157031 + MER2 DNA MER2_type 186 345 0 418 151 116 0 chr12 33125458 33125544 -111156945 + L1MB8 LINE L1 5828 5923 -255 1387 125 37 148 chr12 33125544 33125895 -111156594 + Tigger1 DNA MER2_type 1 312 -2106 1992 146 44 0 chr12 33125895 33126190 -111156299 - AluSx SINE Alu -4 308 1 3664 109 43 6 chr12 33126194 33126728 -111155761 + MER41A LTR ERV1 1 554 0 434 242 23 45 chr12 33126732 33126864 -111155625 - L2 LINE L2 -570 2744 2616 542 231 30 59 chr12 33126865 33126971 -111155518 + MER34 LTR ERV1 1 102 -440 2425 135 94 2 chr12 33126971 33127385 -111155104 - LTR47A LTR ERVL 0 452 1 542 231 30 59 chr12 33127385 33127447 -111155042 + MER34 LTR ERV1 102 164 -378 2270 77 0 68 chr12 33127447 33127771 -111154718 - AluSx SINE Alu -10 302 1 4179 123 3 10 chr12 33127898 33128514 -111153975 + LTR9 LTR ERV1 1 612 0 746 231 57 57 chr12 33128522 33128803 -111153686 + MER34 LTR ERV1 257 537 -5 434 242 97 0 chr12 33128807 33128931 -111153558 - L2 LINE L2 -696 2618 2483 2206 100 3 3 chr12 33129066 33129366 -111153123 + AluSx SINE Alu 1 300 -12 2297 97 3 3 chr12 33129805 33130113 -111152376 + AluSx SINE Alu 1 308 -4 260 224 0 0 chr12 33130178 33130227 -111152262 + L1MA10 LINE L1 6199 6247 -87 1182 186 71 108 chr12 33130227 33130636 -111151853 + LTR34 LTR ERV1 1 394 -305 2210 100 21 0 chr12 33130957 33131248 -111151241 + AluSx SINE Alu 1 297 -15 535 292 162 23 chr12 33132326 33132634 -111149855 - MARNA DNA Mariner -28 558 208 2254 210 74 67 chr12 33133246 33133421 -111149068 + MER21B LTR ERV1 101 273 -590 2241 116 0 19 chr12 33133421 33133739 -111148750 + AluSx SINE Alu 1 312 0 2254 210 74 67 chr12 33133739 33134269 -111148220 + MER21B LTR ERV1 273 811 -52 22 0 0 0 chr12 33134459 33134481 -111148008 + AT_rich Low_complexity Low_complexity 1 22 0 1295 170 5 0 chr12 33134481 33134693 -111147796 + AluJb SINE Alu 87 299 -13 2194 94 3 38 chr12 33134981 33135300 -111147189 - AluSg SINE Alu 0 310 3 788 164 7 14 chr12 33135411 33135551 -111146938 + FLAM_C SINE Alu 1 139 -4 485 223 7 4 chr12 33135671 33135799 -111146690 + MSTC LTR MaLR 220 379 -48 2416 91 0 0 chr12 33135804 33136100 -111146389 + AluSq SINE Alu 1 296 -17 890 173 45 45 chr12 33136164 33136366 -111146123 - AluJo SINE Alu -13 299 98 1148 106 33 11 chr12 33136569 33136749 -111145740 - L1MA4 LINE L1 -300 6000 5817 369 93 0 0 chr12 33136749 33136803 -111145686 + (TCCC)n Simple_repeat Simple_repeat 1 54 0 726 173 0 0 chr12 33136803 33136913 -111145576 - AluJb SINE Alu -30 282 173 2256 125 0 0 chr12 33136949 33137253 -111145236 - AluSg SINE Alu -5 305 2 1508 99 15 73 chr12 33137254 33137370 -111145119 - L1MA4 LINE L1 -471 5829 5708 2275 110 0 0 chr12 33137370 33137662 -111144827 - AluSc SINE Alu -17 292 1 1508 99 15 73 chr12 33137662 33137817 -111144672 - L1MA4 LINE L1 -592 5708 5574 299 247 43 0 chr12 33137925 33138018 -111144471 + (TATATG)n Simple_repeat Simple_repeat 4 100 0 1953 150 3 26 chr12 33138267 33138574 -111143915 + AluJb SINE Alu 1 300 -12 38 68 0 0 chr12 33138682 33138755 -111143734 + AT_rich Low_complexity Low_complexity 1 73 0 2006 150 3 3 chr12 33139035 33139335 -111143154 - AluJb SINE Alu -12 300 1 255 259 36 22 chr12 33140698 33140837 -111141652 - L1M4 LINE L1 -3704 2442 2302 * 1661 272 41 21 chr12 33140824 33141660 -111140829 - L1ME3 LINE L1 -274 5888 5035 3131 94 22 20 chr12 33141757 33142214 -111140275 - L1PA10 LINE L1 -106 6062 5605 1978 46 0 0 chr12 33142413 33142652 -111139837 - L1PA8 LINE L1 -1 6171 5933 4099 98 11 14 chr12 33142652 33143438 -111139051 - L1P3 LINE L1 -4523 1938 1153 302 237 114 9 chr12 33143448 33143562 -111138927 - L1P3 LINE L1 -5660 801 676 2176 98 0 7 chr12 33143691 33144000 -111138489 - AluSq SINE Alu 0 307 1 23 0 0 0 chr12 33144654 33144677 -111137812 + AT_rich Low_complexity Low_complexity 1 23 0 2288 116 0 0 chr12 33144726 33145027 -111137462 - AluSq SINE Alu -12 301 1 1396 143 0 14 chr12 33145255 33145471 -111137018 - AluJo SINE Alu -95 217 5 352 226 24 0 chr12 33145590 33145674 -111136815 + MER103 DNA DNA 17 102 -64 1858 189 54 76 chr12 33145752 33146303 -111136186 - LTR55 LTR ERV -2 546 8 2133 139 3 0 chr12 33146459 33146760 -111135729 - AluSx SINE Alu -10 302 1 240 241 74 0 chr12 33146826 33146880 -111135609 + Charlie1 DNA MER1_type 1 58 -2703 * 2608 171 44 50 chr12 33146877 33146941 -111135548 + Charlie1 DNA MER1_type 1748 1811 -950 2438 96 30 30 chr12 33146941 33147305 -111135184 + THE1B LTR MaLR 1 364 0 2608 171 44 50 chr12 33147305 33147825 -111134664 + Charlie1 DNA MER1_type 1811 2329 -432 362 141 153 129 chr12 33147859 33147973 -111134516 + Charlie1 DNA MER1_type 2582 2703 -58 2361 84 0 3 chr12 33147973 33148271 -111134218 - AluY SINE Alu -14 297 1 362 141 153 129 chr12 33148271 33148326 -111134163 + Charlie1 DNA MER1_type 2703 2755 -6 1337 196 14 17 chr12 33148532 33148828 -111133661 - AluSx SINE Alu -17 295 1 1200 121 79 47 chr12 33149231 33149404 -111133085 - Tigger4(Zombi) DNA MER2_type 0 2731 2548 1556 190 0 70 chr12 33149404 33149584 -111132905 - AluJb SINE Alu -4 308 160 1948 155 3 7 chr12 33149584 33149888 -111132601 - AluSx SINE Alu -9 303 1 1556 190 0 70 chr12 33149888 33150038 -111132451 - AluJb SINE Alu -152 160 1 1200 121 79 47 chr12 33150038 33150079 -111132410 - Tigger4(Zombi) DNA MER2_type -183 2548 2510 1521 207 8 4 chr12 33150081 33150347 -111132142 - Tigger4(Zombi) DNA MER2_type -2463 268 2 234 295 39 0 chr12 33150349 33150427 -111132062 - MLT1G LTR MaLR -58 491 411 555 192 186 21 chr12 33150526 33150796 -111131693 - MLT1G LTR MaLR -284 306 1 2376 101 0 0 chr12 33150804 33151101 -111131388 - AluSx SINE Alu -15 297 1 329 295 182 26 chr12 33151138 33151484 -111131005 + L1ME4a LINE L1 5656 6055 -66 2519 24 41 0 chr12 33151802 33152093 -111130396 + AluY SINE Alu 1 303 -8 904 97 0 0 chr12 33152554 33152667 -111129822 - AluSg/x SINE Alu -18 292 180 4161 38 2 0 chr12 33152768 33153275 -111129214 + L1P LINE L1 4289 4796 -1350 359 254 87 55 chr12 33153310 33153779 -111128710 - L1M4 LINE L1 -2974 3172 2689 1915 135 10 3 chr12 33154075 33154371 -111128118 + AluSq SINE Alu 1 298 -15 603 136 0 93 chr12 33154409 33154517 -111127972 + U6 snRNA snRNA 1 99 -8 1946 151 3 3 chr12 33154517 33154816 -111127673 - AluJb SINE Alu -13 299 1 181 346 50 57 chr12 33154882 33154950 -111127539 + MER5A DNA MER1_type 6 73 -116 2067 86 65 3 chr12 33154950 33155240 -111127249 + AluY SINE Alu 2 309 -2 181 346 50 57 chr12 33155240 33155330 -111127159 + MER5A DNA MER1_type 73 163 -26 556 190 36 0 chr12 33155364 33155501 -111126988 - L1MA9 LINE L1 -1 6311 6170 2311 72 4 0 chr12 33155539 33155816 -111126673 + AluSp SINE Alu 1 278 -35 2506 73 3 0 chr12 33155818 33156121 -111126368 + AluSx SINE Alu 1 304 -8 228 54 0 0 chr12 33156121 33156158 -111126331 + AluSp SINE Alu 264 300 -3 2303 92 31 0 chr12 33156339 33156631 -111125858 + AluSp SINE Alu 1 301 -12 603 240 166 74 chr12 33157550 33157875 -111124614 + L1ME LINE L1 5390 5744 -377 307 236 171 21 chr12 33158270 33158410 -111124079 + MIR3 SINE MIR 17 177 -31 212 182 0 0 chr12 33159672 33159716 -111122773 - MIR SINE MIR -10 252 209 2154 118 20 0 chr12 33159727 33160033 -111122456 + AluSx SINE Alu 1 312 0 2048 125 7 7 chr12 33160065 33160370 -111122119 - AluSq SINE Alu -8 305 1 2193 78 3 14 chr12 33160373 33160657 -111121832 - AluSq SINE Alu -12 301 21 307 218 43 146 chr12 33160657 33160937 -111121552 - L1M4 LINE L1 -945 5201 4951 21 0 0 0 chr12 33161726 33161747 -111120742 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 33162309 33162330 -111120159 + AT_rich Low_complexity Low_complexity 1 21 0 890 302 80 32 chr12 33162833 33163025 -111119464 + MARNA DNA Mariner 14 195 -391 723 203 0 0 chr12 33163025 33163153 -111119336 - FLAM_A SINE Alu -2 131 4 890 302 80 32 chr12 33163153 33163487 -111119002 + MARNA DNA Mariner 195 565 -21 2129 104 3 41 chr12 33163597 33163913 -111118576 - AluSq SINE Alu -9 304 1 234 330 61 43 chr12 33164119 33164234 -111118255 + MIR3 SINE MIR 45 161 -47 2294 75 41 0 chr12 33164514 33164809 -111117680 - AluY SINE Alu -4 307 1 180 0 0 0 chr12 33167061 33167081 -111115408 + (T)n Simple_repeat Simple_repeat 1 20 0 337 258 60 66 chr12 33167762 33167929 -111114560 + MIR SINE MIR 2 167 -95 576 192 0 0 chr12 33167976 33168075 -111114414 + AluSg/x SINE Alu 209 307 -5 852 178 33 93 chr12 33169060 33169210 -111113279 + MER3 DNA MER1_type 9 144 -65 2264 98 10 0 chr12 33169210 33169505 -111112984 + AluSx SINE Alu 1 298 -14 852 178 33 93 chr12 33169505 33169568 -111112921 + MER3 DNA MER1_type 144 209 0 278 279 0 0 chr12 33169514 33169575 -111112914 - MER3 DNA MER1_type -108 101 41 * 220 233 0 27 chr12 33169578 33169595 -111112894 + L2 LINE L2 2694 2710 -604 1840 141 28 0 chr12 33169595 33169886 -111112603 + AluSx SINE Alu 1 299 -13 220 233 0 27 chr12 33169886 33169941 -111112548 + L2 LINE L2 2710 2764 -550 347 124 199 16 chr12 33169941 33170021 -111112468 + AluSc SINE Alu 223 293 -6 25 0 0 0 chr12 33170214 33170239 -111112250 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr12 33170350 33170373 -111112116 + AT_rich Low_complexity Low_complexity 1 23 0 316 71 0 0 chr12 33170714 33170756 -111111733 - AluSq/x SINE Alu -194 108 67 2279 95 7 0 chr12 33171273 33171569 -111110920 - AluSx SINE Alu -14 298 1 2225 108 6 19 chr12 33173548 33173863 -111108626 - AluSx SINE Alu -1 311 1 378 304 30 0 chr12 33175436 33175571 -111106918 + MIR SINE MIR 68 206 -56 2458 92 0 0 chr12 33175655 33175958 -111106531 + AluSq SINE Alu 2 304 -9 444 296 112 16 chr12 33176280 33176617 -111105872 + LTR16A LTR ERVL 24 444 -6 2390 101 3 0 chr12 33176781 33177087 -111105402 - AluSx SINE Alu -5 307 1 241 232 0 18 chr12 33177087 33177143 -111105346 + L2 LINE L2 2376 2430 -884 2108 141 3 0 chr12 33177221 33177526 -111104963 - AluSx SINE Alu -6 306 1 2284 87 14 0 chr12 33177540 33177829 -111104660 - AluSg SINE Alu -17 293 1 228 54 0 0 chr12 33178177 33178214 -111104275 - Alu SINE Alu -3 300 264 2206 97 3 7 chr12 33178214 33178504 -111103985 - AluSx SINE Alu -8 304 16 708 139 0 151 chr12 33178525 33178691 -111103798 + FLAM_C SINE Alu 2 142 -1 2412 98 0 0 chr12 33178695 33179002 -111103487 + AluSx SINE Alu 1 307 -5 1351 174 5 0 chr12 33179044 33179262 -111103227 + AluJo SINE Alu 84 302 -10 1100 209 155 30 chr12 33179262 33179299 -111103190 - MLT1A1 LTR MaLR -32 333 302 2047 110 3 28 chr12 33179299 33179614 -111102875 + AluSq SINE Alu 1 308 0 1100 209 155 30 chr12 33179614 33179871 -111102618 - MLT1A1 LTR MaLR -63 302 1 356 223 46 31 chr12 33179996 33180126 -111102363 + L1M4 LINE L1 5167 5298 -848 1343 170 22 9 chr12 33180422 33180652 -111101837 - AluSx SINE Alu -79 233 1 1312 152 118 13 chr12 33181390 33181627 -111100862 + AluSx SINE Alu 2 263 -49 240 259 27 65 chr12 33181781 33181966 -111100523 + G-rich Low_complexity Low_complexity 2 179 0 225 193 0 0 chr12 33181994 33182051 -111100438 + AluSx SINE Alu 240 296 -6 288 210 120 40 chr12 33182051 33182151 -111100338 + L1M4 LINE L1 2470 2577 -3569 2195 120 3 0 chr12 33182160 33182461 -111100028 + AluSg SINE Alu 1 302 -8 300 185 0 0 chr12 33182470 33182524 -111099965 + L1M4 LINE L1 2667 2720 -3426 1923 121 3 51 chr12 33182530 33182843 -111099646 + AluSq SINE Alu 1 298 -15 687 110 63 31 chr12 33182973 33183100 -111099389 - AluSq/x SINE Alu -181 132 2 2172 85 6 31 chr12 33183305 33183624 -111098865 - AluY SINE Alu 0 311 1 2007 154 0 0 chr12 33183625 33183917 -111098572 - AluJb SINE Alu -16 296 5 892 202 6 6 chr12 33184728 33184896 -111097593 - AluJo SINE Alu -107 205 38 24 32 0 0 chr12 33185088 33185119 -111097370 + GC_rich Low_complexity Low_complexity 1 31 0 2072 125 0 0 chr12 33185901 33186180 -111096309 + AluJb SINE Alu 1 279 -33 36 0 0 0 chr12 33186313 33186349 -111096140 + AT_rich Low_complexity Low_complexity 1 36 0 764 149 0 0 chr12 33186349 33186463 -111096026 - FLAM_C SINE Alu -24 119 6 21 0 0 0 chr12 33186467 33186488 -111096001 + AT_rich Low_complexity Low_complexity 1 21 0 2170 101 3 0 chr12 33186488 33186775 -111095714 - AluSx SINE Alu -24 288 1 978 158 10 41 chr12 33186981 33187177 -111095312 - AluSg/x SINE Alu -2 308 119 270 218 0 0 chr12 33237339 33237394 -111045095 + L1MC4a LINE L1 5795 5849 -1959 888 159 0 0 chr12 33237404 33237530 -111044959 + AluSq/x SINE Alu 1 126 -187 877 163 13 8 chr12 33237532 33237561 -111044928 + GA-rich Low_complexity Low_complexity 1 28 -523 2073 113 7 45 chr12 33237561 33237870 -111044619 + AluSx SINE Alu 1 297 -15 877 163 13 8 chr12 33237870 33238081 -111044408 + GA-rich Low_complexity Low_complexity 28 551 0 331 159 8 76 chr12 33238102 33238234 -111044255 + GA-rich Low_complexity Low_complexity 1 123 0 3466 123 37 4 chr12 33238242 33238752 -111043737 + MER1A DNA MER1_type 1 527 0 323 210 62 0 chr12 33238752 33238833 -111043656 + L1MC4a LINE L1 5856 5941 -1867 2437 84 0 0 chr12 33238834 33239130 -111043359 + AluY SINE Alu 1 296 -15 186 103 0 0 chr12 33239144 33239173 -111043316 + (TG)n Simple_repeat Simple_repeat 2 30 0 1723 186 10 0 chr12 33239331 33239627 -111042862 + AluJb SINE Alu 1 299 -13 2295 82 32 0 chr12 33239666 33239946 -111042543 - AluY SINE Alu -22 289 1 1142 145 0 0 chr12 33240464 33240636 -111041853 - AluJb SINE Alu -6 306 135 2385 80 0 3 chr12 33241061 33241349 -111041140 + AluY SINE Alu 1 287 -24 2260 108 0 3 chr12 33241561 33241857 -111040632 + AluSx SINE Alu 1 295 -17 2584 62 0 3 chr12 33241907 33242212 -111040277 + AluY SINE Alu 1 304 -7 2496 206 10 20 chr12 33242323 33242833 -111039656 - MLT1D LTR MaLR 0 505 1 366 275 0 0 chr12 33243093 33243173 -111039316 - MLT1J LTR MaLR -333 178 99 2371 98 0 0 chr12 33244475 33244780 -111037709 - AluY SINE Alu -6 305 1 2025 116 0 0 chr12 33245112 33245380 -111037109 + AluSx SINE Alu 7 274 -38 895 132 7 21 chr12 33245380 33245524 -111036965 + AluSg/x SINE Alu 163 304 -8 776 62 0 18 chr12 33245559 33245671 -111036818 + (TTTC)n Simple_repeat Simple_repeat 2 111 0 1713 139 4 26 chr12 33245697 33245963 -111036526 - AluJo SINE Alu -52 260 1 1643 169 0 11 chr12 33246691 33246963 -111035526 + AluJb SINE Alu 21 289 -23 616 219 0 0 chr12 33246965 33247079 -111035410 + AluJo/FLAM SINE Alu 2 115 -197 2108 142 0 0 chr12 33247080 33247382 -111035107 - AluSx SINE Alu -10 302 1 21 0 0 0 chr12 33247397 33247418 -111035071 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr12 33247429 33247475 -111035014 + (CTATT)n Simple_repeat Simple_repeat 1 46 0 1669 153 39 25 chr12 33247476 33247757 -111034732 - AluJo SINE Alu -27 285 1 226 0 0 56 chr12 33247761 33247797 -111034692 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2325 86 0 0 chr12 33247801 33248091 -111034398 - AluY SINE Alu -21 290 1 2208 98 7 0 chr12 33248233 33248520 -111033969 + AluSq SINE Alu 1 289 -24 872 121 0 0 chr12 33248556 33248672 -111033817 + AluSq/x SINE Alu 1 116 -197 2082 176 31 5 chr12 33248740 33249131 -111033358 - MER57A LTR ERV1 0 403 3 22 0 0 0 chr12 33250899 33250921 -111031568 + AT_rich Low_complexity Low_complexity 1 22 0 2106 117 0 23 chr12 33250921 33251228 -111031261 - AluSx SINE Alu -2 310 11 2426 85 0 3 chr12 33251244 33251549 -111030940 - AluSq SINE Alu -9 304 1 669 196 0 43 chr12 33251583 33251721 -111030768 + FLAM_C SINE Alu 2 133 0 300 111 0 0 chr12 33251723 33251777 -111030712 + (GGGGA)n Simple_repeat Simple_repeat 5 58 0 3732 126 66 95 chr12 33252120 33252927 -111029562 + LTR1 LTR ERV1 3 785 0 742 173 0 8 chr12 33253597 33253724 -111028765 - FLAM_C SINE Alu -16 127 2 224 347 70 19 chr12 33253844 33254057 -111028432 - L2 LINE L2 -1012 2302 2079 2068 179 127 54 chr12 33254279 33254775 -111027714 + MLT1F LTR MaLR 3 534 -8 764 175 16 0 chr12 33254967 33255093 -111027396 + FLAM_C SINE Alu 2 129 -14 213 218 0 0 chr12 33255093 33255171 -111027318 + (TA)n Simple_repeat Simple_repeat 1 78 0 309 326 10 0 chr12 33256215 33256313 -111026176 + MIR SINE MIR 47 145 -117 2130 117 14 0 chr12 33256394 33256684 -111025805 - AluSq SINE Alu -19 294 1 1682 128 32 110 chr12 33256735 33257080 -111025409 - AluYb8 SINE Alu 0 318 1 2338 100 0 0 chr12 33257205 33257505 -111024984 + AluSg1 SINE Alu 1 300 -9 229 255 99 21 chr12 33257778 33257919 -111024570 - L1ME4a LINE L1 -1 6120 5969 2494 82 0 0 chr12 33257987 33258292 -111024197 - AluY SINE Alu -5 306 2 2066 105 49 0 chr12 33258294 33258579 -111023910 - AluSq SINE Alu -14 299 1 2417 95 0 0 chr12 33258629 33258934 -111023555 - AluY SINE Alu -6 305 1 288 252 122 84 chr12 33259474 33259504 -111022985 + MER91C DNA MER1_type 4 31 -109 2351 76 3 0 chr12 33259504 33259805 -111022684 - AluSg SINE Alu -8 302 1 288 252 122 84 chr12 33259805 33259905 -111022584 + MER91C DNA MER1_type 31 139 -1 1359 121 10 0 chr12 33260220 33260419 -111022070 - AluSq SINE Alu -17 296 96 2311 85 3 0 chr12 33262468 33262774 -111019715 - AluSq SINE Alu -6 307 1 231 125 172 0 chr12 33262932 33262996 -111019493 - L1ME4a LINE L1 0 6121 6047 2116 119 0 3 chr12 33263201 33263512 -111018977 - AluSq SINE Alu -3 310 1 1854 145 13 0 chr12 33263570 33263874 -111018615 + AluSg SINE Alu 1 308 -2 2250 55 13 7 chr12 33264214 33264523 -111017966 + AluY SINE Alu 1 311 0 433 181 103 35 chr12 33264593 33264709 -111017780 - MIR SINE MIR -42 220 97 688 193 22 30 chr12 33265305 33265440 -111017049 + MER94 DNA DNA 1 134 0 247 250 167 52 chr12 33265485 33265508 -111016981 + MIR SINE MIR 89 108 -154 1427 184 6 58 chr12 33265508 33265696 -111016793 - AluJb SINE Alu -2 310 145 2349 65 0 0 chr12 33265696 33265989 -111016500 - AluY SINE Alu -18 293 1 1427 184 6 58 chr12 33265989 33266127 -111016362 - AluJb SINE Alu -167 145 1 247 250 167 52 chr12 33266127 33266199 -111016290 + MIR SINE MIR 108 195 -67 4010 139 13 6 chr12 33266274 33266905 -111015584 - MER41B LTR ERV1 0 635 1 1636 145 50 7 chr12 33267150 33267433 -111015056 - AluJo SINE Alu -15 297 3 819 308 53 32 chr12 33268105 33268443 -111014046 - L2 LINE L2 0 3313 2969 2051 43 111 0 chr12 33268450 33268730 -111013759 + AluY SINE Alu 1 311 0 1237 126 5 0 chr12 33268730 33268921 -111013568 + AluSp SINE Alu 121 312 -1 2123 85 3 0 chr12 33268926 33269244 -111013245 + AluSp SINE Alu 1 319 0 2210 94 3 0 chr12 33269311 33269609 -111012880 + AluSq SINE Alu 1 299 -14 1216 124 0 0 chr12 33269609 33269787 -111012702 + AluSg/x SINE Alu 132 309 -1 2426 115 37 47 chr12 33269787 33270266 -111012223 - MER4E LTR ERV1 -316 326 1 336 177 73 10 chr12 33270277 33270373 -111012116 - L1MC4 LINE L1 -501 7541 7440 1836 142 13 13 chr12 33270393 33270703 -111011786 + AluSx SINE Alu 1 310 -2 441 126 63 84 chr12 33270753 33270848 -111011641 - U6 snRNA snRNA 0 107 15 2281 69 0 0 chr12 33270849 33271137 -111011352 + AluY SINE Alu 1 288 -23 482 258 0 13 chr12 33271140 33271295 -111011194 + (CATA)n Simple_repeat Simple_repeat 4 156 0 809 171 0 0 chr12 33271361 33271490 -111010999 + FLAM_C SINE Alu 1 129 -4 242 224 45 97 chr12 33271493 33271627 -111010862 - LTR40b LTR ERVL -7 455 329 473 242 150 65 chr12 33271831 33272137 -111010352 + LTR68 LTR ERV1 405 736 -4 1410 108 83 129 chr12 33272444 33272685 -111009804 - pTR5 LTR ERV1 -107 607 171 382 204 31 20 chr12 33272687 33272785 -111009704 - LTR30 LTR ERV1 -80 642 544 6122 132 58 117 chr12 33272785 33274148 -111008341 - pTR5 LTR ERV1 -413 2025 743 2837 141 24 12 chr12 33274274 33274863 -111007626 + MER4E LTR ERV1 3 766 0 359 238 68 122 chr12 33274968 33275008 -111007481 - MLT1J LTR MaLR -195 316 275 2478 127 53 14 chr12 33275008 33275441 -111007048 + LTR7 LTR ERV1 1 450 0 359 238 68 122 chr12 33275441 33275684 -111006805 - MLT1J LTR MaLR -236 275 47 285 29 0 0 chr12 33275684 33275718 -111006771 + (TG)n Simple_repeat Simple_repeat 2 35 0 5909 65 13 12 chr12 33275805 33276431 -111006058 + MER4E LTR ERV1 1 630 -136 2384 53 10 3 chr12 33276431 33276731 -111005758 + AluY SINE Alu 1 302 -9 5909 65 13 12 chr12 33276731 33276869 -111005620 + MER4E LTR ERV1 630 766 0 899 248 86 48 chr12 33276936 33277332 -111005157 + LTR16A1 LTR ERVL 47 457 0 375 188 89 0 chr12 33277339 33277440 -111005049 + L1MC/D LINE L1 5667 5776 -2032 2177 96 7 0 chr12 33277520 33277813 -111004676 - AluSx SINE Alu -17 295 1 2271 75 3 3 chr12 33277847 33278142 -111004347 - AluSx SINE Alu -17 295 1 234 264 299 0 chr12 33278148 33278235 -111004254 - MLT1H LTR MaLR -386 163 51 929 220 47 91 chr12 33278577 33278673 -111003816 - Charlie2 DNA MER1_type -93 2769 2670 2006 111 0 4 chr12 33278673 33278952 -111003537 + AluSg SINE Alu 1 278 -32 180 0 0 0 chr12 33278952 33278972 -111003517 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 929 220 47 91 chr12 33278972 33279267 -111003222 - Charlie2 DNA MER1_type -191 2671 2403 2367 70 0 0 chr12 33279267 33279568 -111002921 - AluY SINE Alu -10 301 1 929 220 47 91 chr12 33279568 33279688 -111002801 - Charlie2 DNA MER1_type -459 2403 2279 1159 204 58 122 chr12 33279962 33280304 -111002185 - MER21B LTR ERV1 -441 422 114 840 119 0 0 chr12 33280304 33280422 -111002067 + AluJ SINE Alu 1 118 -184 1159 204 58 122 chr12 33280422 33280530 -111001959 - MER21B LTR ERV1 -749 114 1 2179 96 3 7 chr12 33280675 33280966 -111001523 - AluSg SINE Alu -20 290 1 992 165 0 27 chr12 33281118 33281133 -111001356 + AluJ SINE Alu 120 134 -178 1821 145 0 31 chr12 33281133 33281267 -111001222 + AluSx SINE Alu 3 140 -172 2082 104 13 3 chr12 33281267 33281565 -111000924 + AluSg SINE Alu 1 301 -9 1821 145 0 31 chr12 33281565 33281747 -111000742 + AluSx SINE Alu 140 309 -3 992 165 0 27 chr12 33281747 33281919 -111000570 + AluJ SINE Alu 134 302 -10 1767 157 20 7 chr12 33282523 33282823 -110999666 - AluJb SINE Alu -8 304 1 276 289 37 37 chr12 33282889 33283024 -110999465 + LTR49-int LTR ERV1 3 137 -7400 262 229 16 0 chr12 33283118 33283179 -110999310 + MER34B LTR ERV1 504 565 0 2204 87 0 10 chr12 33283309 33283609 -110998880 - AluSg SINE Alu -9 301 5 254 333 44 18 chr12 33283863 33283977 -110998512 + LTR49-int LTR ERV1 1366 1482 -4464 252 257 88 68 chr12 33284093 33284241 -110998248 + LTR49-int LTR ERV1 1372 1522 -4809 1342 192 58 31 chr12 33284248 33284540 -110997949 - AluJb SINE Alu -2 300 1 279 181 48 48 chr12 33284883 33284988 -110997501 + LTR49-int LTR ERV1 1290 1394 -4937 51 31 0 0 chr12 33285323 33285388 -110997101 + AT_rich Low_complexity Low_complexity 1 65 0 1938 137 23 0 chr12 33285507 33285806 -110996683 + AluSx SINE Alu 2 307 -5 281 245 133 0 chr12 33285908 33286006 -110996483 + LTR49-int LTR ERV1 1523 1633 -4698 710 153 0 0 chr12 33286026 33286137 -110996352 + AluSg/x SINE Alu 185 295 -15 258 159 0 63 chr12 33286201 33286264 -110996225 - LTR49-int LTR ERV1 -2377 2494 2436 710 176 51 33 chr12 33286267 33286546 -110995943 - LTR49-int LTR ERV1 -3202 3129 1186 607 191 52 33 chr12 33286342 33286552 -110995937 - LTR57-int LTR ERVL -4247 1096 883 * 609 252 0 0 chr12 33286579 33286706 -110995783 - FLAM_A SINE Alu -3 130 4 419 274 40 74 chr12 33286726 33286901 -110995588 - LTR49-int LTR ERV1 -4231 2100 1932 876 131 0 15 chr12 33286910 33287047 -110995442 + AluJo SINE Alu 1 135 -177 563 215 93 45 chr12 33287092 33287290 -110995199 - LTR49-int LTR ERV1 -4391 545 351 1402 151 22 40 chr12 33287304 33287582 -110994907 + AluJo SINE Alu 30 302 -10 3884 159 17 51 chr12 33287657 33287906 -110994583 + MER84-int LTR ERV1 4267 4523 -1808 2209 97 0 6 chr12 33287906 33288217 -110994272 - AluY SINE Alu -2 309 1 3884 159 17 51 chr12 33288217 33288277 -110994212 + MER84-int LTR ERV1 4523 4583 -1748 1782 149 0 20 chr12 33288277 33288572 -110993917 - AluJo SINE Alu -12 300 12 3884 159 17 51 chr12 33288572 33289072 -110993417 + MER84-int LTR ERV1 4583 5050 -1281 274 220 70 20 chr12 33289078 33289178 -110993311 + MER84-int LTR ERV1 4274 4378 -576 1552 162 55 3 chr12 33289209 33289499 -110992990 + AluJb SINE Alu 1 305 -7 1364 139 14 96 chr12 33289738 33290019 -110992470 - MER61E LTR ERV1 -43 526 269 1006 174 48 48 chr12 33290093 33290300 -110992189 - LTR25 LTR ERV1 -340 454 248 808 149 6 77 chr12 33290288 33290456 -110992033 - MER61E LTR ERV1 -413 156 1 * 283 258 53 73 chr12 33291304 33291455 -110991034 + L1P LINE L1 4901 5048 -1098 207 0 0 0 chr12 33291609 33291632 -110990857 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1278 58 0 0 chr12 33291634 33291790 -110990699 - AluY SINE Alu -23 288 133 294 258 0 0 chr12 33291864 33291930 -110990559 - AluSp/q SINE Alu -20 283 218 204 149 0 0 chr12 33291962 33292009 -110990480 + (TC)n Simple_repeat Simple_repeat 1 47 0 540 72 0 0 chr12 33292036 33292105 -110990384 + AluSc SINE Alu 222 290 -19 306 0 0 0 chr12 33292105 33292139 -110990350 + (TA)n Simple_repeat Simple_repeat 2 35 0 422 274 112 88 chr12 33292355 33292477 -110990012 + L1M4 LINE L1 4643 4761 -1385 776 181 0 0 chr12 33292477 33292610 -110989879 + FLAM_C SINE Alu 1 133 0 422 274 112 88 chr12 33292610 33292907 -110989582 + L1M4 LINE L1 4761 5072 -1074 2480 66 0 0 chr12 33293018 33293322 -110989167 - AluY SINE Alu -7 304 1 810 126 8 0 chr12 33293322 33293449 -110989040 - AluSq/x SINE Alu -176 136 9 1356 190 158 14 chr12 33293501 33293932 -110988557 - L1MC4 LINE L1 -1 8041 7549 2459 45 2 134 chr12 33293932 33294328 -110988161 - MER4E LTR ERV1 0 766 423 2123 98 7 0 chr12 33294329 33294625 -110987864 + AluSc SINE Alu 1 298 -11 231 93 111 19 chr12 33294643 33294677 -110987812 + Alu SINE Alu 6 44 -256 255 128 0 0 chr12 33294677 33294716 -110987773 + Alu SINE Alu 1 39 -262 2143 104 3 0 chr12 33294717 33295015 -110987474 + AluSq SINE Alu 1 299 -14 1117 133 0 0 chr12 33295015 33295180 -110987309 + AluSg/x SINE Alu 134 298 -14 2434 112 37 49 chr12 33295180 33295660 -110986829 - MER4E LTR ERV1 -316 326 1 336 177 73 10 chr12 33295671 33295767 -110986722 - L1MC4 LINE L1 -501 7541 7440 1836 142 13 13 chr12 33295787 33296097 -110986392 + AluSx SINE Alu 1 310 -2 441 126 63 84 chr12 33296147 33296242 -110986247 - U6 snRNA snRNA 0 107 15 2281 69 0 0 chr12 33296243 33296531 -110985958 + AluY SINE Alu 1 288 -23 506 256 0 12 chr12 33296531 33296691 -110985798 + (CATA)n Simple_repeat Simple_repeat 3 160 0 809 171 0 0 chr12 33296757 33296886 -110985603 + FLAM_C SINE Alu 1 129 -4 242 224 45 97 chr12 33296889 33297023 -110985466 - LTR40b LTR ERVL -7 455 329 473 242 150 65 chr12 33297227 33297533 -110984956 + LTR68 LTR ERV1 405 736 -4 1433 107 46 18 chr12 33297840 33298081 -110984408 - pTR5 LTR ERV1 -107 607 171 382 204 31 20 chr12 33298083 33298181 -110984308 - LTR30 LTR ERV1 -80 642 544 6122 132 58 117 chr12 33298181 33299544 -110982945 - pTR5 LTR ERV1 -413 2025 743 2837 141 24 12 chr12 33299670 33300259 -110982230 + MER4E LTR ERV1 3 766 0 359 238 68 122 chr12 33300364 33300404 -110982085 - MLT1J LTR MaLR -195 316 275 2478 127 53 14 chr12 33300404 33300837 -110981652 + LTR7 LTR ERV1 1 450 0 359 238 68 122 chr12 33300837 33301080 -110981409 - MLT1J LTR MaLR -236 275 47 303 28 0 0 chr12 33301080 33301116 -110981373 + (TG)n Simple_repeat Simple_repeat 2 37 0 5909 65 13 12 chr12 33301203 33301829 -110980660 + MER4E LTR ERV1 1 630 -136 2377 57 10 3 chr12 33301829 33302130 -110980359 + AluY SINE Alu 1 303 -8 5909 65 13 12 chr12 33302130 33302268 -110980221 + MER4E LTR ERV1 630 766 0 899 248 86 48 chr12 33302335 33302731 -110979758 + LTR16A1 LTR ERVL 47 457 0 375 188 89 0 chr12 33302738 33302839 -110979650 + L1MC/D LINE L1 5667 5776 -2032 2177 96 7 0 chr12 33302919 33303212 -110979277 - AluSx SINE Alu -17 295 1 2315 78 3 0 chr12 33303246 33303540 -110978949 - AluSx SINE Alu -17 295 1 37 23 0 0 chr12 33303543 33303587 -110978902 + AT_rich Low_complexity Low_complexity 1 44 0 1909 138 7 3 chr12 33303587 33303877 -110978612 + AluJb SINE Alu 1 291 -21 2460 62 0 0 chr12 33303940 33304245 -110978244 + AluY SINE Alu 1 305 -6 317 306 268 0 chr12 33304512 33304796 -110977693 + L2 LINE L2 1746 2105 -1209 1032 75 82 0 chr12 33304798 33304945 -110977544 - AluSq SINE Alu -21 292 134 1318 91 0 122 chr12 33304945 33305147 -110977342 - AluSg/x SINE Alu -3 309 143 2143 120 0 0 chr12 33305147 33305448 -110977041 - AluSx SINE Alu -11 301 1 1318 91 0 122 chr12 33305448 33305499 -110976990 - AluSg/x SINE Alu -169 143 87 789 331 111 41 chr12 33305511 33305569 -110976920 + L2 LINE L2 2199 2252 -1061 1746 152 7 7 chr12 33305569 33305865 -110976624 - AluJb SINE Alu -16 296 1 789 331 111 41 chr12 33305865 33305877 -110976612 + L2 LINE L2 2252 2262 -1051 1858 110 24 14 chr12 33305877 33306216 -110976273 - AluSx SINE Alu 0 312 1 789 331 111 41 chr12 33306216 33306866 -110975623 + L2 LINE L2 2262 3074 -239 1751 159 21 7 chr12 33306866 33307155 -110975334 + AluJb SINE Alu 1 293 -19 789 331 111 41 chr12 33307155 33307380 -110975109 + L2 LINE L2 3074 3282 -31 2067 97 7 0 chr12 33307489 33307787 -110974702 - AluY SINE Alu -11 300 1 1096 123 6 0 chr12 33307927 33308089 -110974400 + AluSc SINE Alu 127 289 -20 1808 143 7 10 chr12 33308097 33308397 -110974092 + AluJo SINE Alu 6 304 -8 258 383 45 13 chr12 33308406 33308560 -110973929 + L2 LINE L2 2915 3073 -199 201 232 29 14 chr12 33308624 33308693 -110973796 + (TTTG)n Simple_repeat Simple_repeat 3 72 0 543 226 26 17 chr12 33308699 33308814 -110973675 + MER58A DNA MER1_type 1 116 0 275 102 0 153 chr12 33308811 33308832 -110973657 + MER58A DNA MER1_type 174 197 -2223 * 2119 120 0 0 chr12 33308832 33309131 -110973358 - AluSq SINE Alu -14 299 1 275 102 0 153 chr12 33309131 33309168 -110973321 + MER58A DNA MER1_type 197 223 -1 608 256 100 6 chr12 33309277 33309437 -110973052 - MIR SINE MIR -41 221 47 439 115 92 35 chr12 33309449 33309536 -110972953 - AluSp/q SINE Alu -4 309 218 1723 201 92 38 chr12 33309562 33310040 -110972449 + L1MC4 LINE L1 7213 7716 -326 2020 120 28 0 chr12 33310085 33310376 -110972113 + AluSx SINE Alu 1 299 -13 941 254 133 59 chr12 33310387 33310791 -110971698 + MLT1H LTR MaLR 73 515 -34 2047 99 11 14 chr12 33310791 33311113 -110971376 - AluSg SINE Alu 0 321 1 941 254 133 59 chr12 33311113 33311151 -110971338 + MLT1H LTR MaLR 515 549 0 2320 114 0 9 chr12 33311439 33311754 -110970735 - AluSx SINE Alu 0 312 1 1780 156 58 0 chr12 33312332 33312627 -110969862 - AluJb SINE Alu 0 312 1 362 288 69 56 chr12 33313917 33314223 -110968266 - MER68 LTR ERV1 -72 490 181 1634 168 33 7 chr12 33314554 33314870 -110967619 - AluSx SINE Alu 0 325 3 2492 65 0 0 chr12 33315159 33315451 -110967038 + AluSq SINE Alu 1 292 -21 2181 114 0 10 chr12 33315468 33315766 -110966723 + AluSx SINE Alu 3 297 -15 2051 159 15 40 chr12 33315837 33316232 -110966257 - Tigger1 DNA MER2_type -15 2403 2019 6244 150 37 27 chr12 33316234 33317760 -110964729 - L1PB2 LINE L1 -3 6148 4637 2615 52 0 0 chr12 33317760 33318067 -110964422 - AluY SINE Alu -4 307 1 6244 150 37 27 chr12 33318067 33318339 -110964150 - L1PB2 LINE L1 -1514 4637 4369 305 62 21 0 chr12 33318339 33318387 -110964102 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6244 150 37 27 chr12 33318387 33318695 -110963794 - L1PB2 LINE L1 -1782 4369 4019 6062 112 28 50 chr12 33318697 33319474 -110963015 - Tigger1 DNA MER2_type -376 2042 1250 1789 166 3 7 chr12 33319474 33319763 -110962726 + AluJb SINE Alu 1 288 -24 6062 112 28 50 chr12 33319763 33319866 -110962623 - Tigger1 DNA MER2_type -1168 1250 1183 2080 148 0 0 chr12 33319866 33320169 -110962320 - AluSx SINE Alu -9 303 1 6062 112 28 50 chr12 33320169 33320276 -110962213 - Tigger1 DNA MER2_type -1235 1183 1075 2204 106 0 0 chr12 33320396 33320715 -110961774 + AluSx SINE Alu 1 319 0 2164 106 3 10 chr12 33320719 33321043 -110961446 + AluSq SINE Alu 1 313 0 1097 183 50 5 chr12 33321044 33321246 -110961243 + MER61E LTR ERV1 355 565 -4 521 273 67 64 chr12 33321259 33321515 -110960974 - MER68 LTR ERV1 -158 447 148 6437 150 5 24 chr12 33321846 33322221 -110960268 + L1PB2 LINE L1 4125 4506 -1645 2117 124 0 0 chr12 33322221 33322538 -110959951 + AluSx SINE Alu 1 312 0 6437 150 5 24 chr12 33322538 33323075 -110959414 + L1PB2 LINE L1 4506 5052 -1099 2305 83 17 0 chr12 33323075 33323377 -110959112 + AluSx SINE Alu 6 312 0 6437 150 5 24 chr12 33323377 33323420 -110959069 + L1PB2 LINE L1 5052 5094 -1057 2120 136 0 0 chr12 33323420 33323715 -110958774 + AluSg SINE Alu 1 295 -15 6437 150 5 24 chr12 33323715 33324829 -110957660 + L1PB2 LINE L1 5094 6151 0 1862 158 3 13 chr12 33324842 33325140 -110957349 + AluSx SINE Alu 1 295 -17 1613 172 61 11 chr12 33325286 33325565 -110956924 - AluSx SINE Alu -19 293 1 913 156 0 0 chr12 33325565 33325700 -110956789 - AluSq/x SINE Alu -178 135 1 852 190 41 10 chr12 33325798 33326004 -110956485 - MER61D LTR ERV1 -17 750 338 2123 123 0 43 chr12 33327049 33327375 -110955114 + AluSx SINE Alu 1 312 0 261 0 0 0 chr12 33327518 33327547 -110954942 + (TG)n Simple_repeat Simple_repeat 2 30 0 229 106 0 197 chr12 33327677 33327708 -110954781 + MLT1H1 LTR MaLR 494 508 -47 1949 133 30 0 chr12 33327708 33328018 -110954471 - AluSc SINE Alu 0 318 1 229 106 0 197 chr12 33328018 33328051 -110954438 + MLT1H1 LTR MaLR 508 546 -9 752 256 96 41 chr12 33328102 33328395 -110954094 - Charlie2 DNA MER1_type -2553 309 1 2058 109 0 0 chr12 33328890 33329165 -110953324 - AluSx SINE Alu -5 307 33 2217 83 24 3 chr12 33329175 33329464 -110953025 - AluSc SINE Alu -14 295 1 2049 123 9 25 chr12 33329870 33330186 -110952303 + AluSx SINE Alu 1 311 -1 842 106 9 0 chr12 33330364 33330477 -110952012 + AluSg/x SINE Alu 171 284 -26 2294 92 3 0 chr12 33330505 33330799 -110951690 + AluSx SINE Alu 1 295 -17 927 259 44 45 chr12 33330801 33331237 -110951252 + MER21A-int LTR ERV1 4560 5032 -2804 310 246 48 18 chr12 33331501 33331652 -110950837 + MER21A-int LTR ERV1 4733 4801 -1728 2001 139 3 7 chr12 33331653 33331948 -110950541 - AluSx SINE Alu -18 294 1 940 98 8 8 chr12 33331950 33332082 -110950407 - AluSp SINE Alu -181 132 1 931 295 50 45 chr12 33332090 33332202 -110950287 + MER21A-int LTR ERV1 4624 4734 -3022 3729 76 13 2 chr12 33332202 33332650 -110949839 - MLT2A2 LTR ERVL 0 453 1 931 295 50 45 chr12 33332650 33333268 -110949221 + MER21A-int LTR ERV1 4734 6072 -1684 2277 87 7 0 chr12 33333414 33333703 -110948786 - AluSc SINE Alu -18 291 1 2052 89 44 0 chr12 33333718 33334012 -110948477 - AluY SINE Alu 0 306 1 972 169 12 0 chr12 33334038 33334204 -110948285 + MER21A-int LTR ERV1 7499 7666 -150 1157 86 0 0 chr12 33334208 33334347 -110948142 + AluSc SINE Alu 3 141 -168 1644 87 5 0 chr12 33334350 33334556 -110947933 + AluSq SINE Alu 7 213 -100 853 123 19 45 chr12 33334796 33334950 -110947539 - FRAM SINE Alu -18 158 9 881 252 38 106 chr12 33334972 33335445 -110947044 - MER34 LTR ERV1 0 542 102 961 169 17 11 chr12 33335476 33335488 -110947001 - AluJb SINE Alu 0 312 302 1923 132 3 46 chr12 33335488 33335814 -110946675 - AluJb SINE Alu 0 312 1 961 169 17 11 chr12 33335814 33335978 -110946511 - AluJb SINE Alu -10 302 135 386 266 11 0 chr12 33335985 33336079 -110946410 - MER34 LTR ERV1 -447 95 1 2131 64 78 7 chr12 33336144 33336425 -110946064 + AluY SINE Alu 1 301 -10 689 266 51 21 chr12 33336546 33336783 -110945706 + MLT2F LTR ERVL 1 244 -419 901 146 277 0 chr12 33336784 33336990 -110945499 + MER21A LTR ERV1 2 264 -667 2955 144 59 42 chr12 33336995 33337024 -110945465 + MER21A LTR ERV1 376 403 -528 2222 99 0 10 chr12 33337024 33337336 -110945153 + AluSx SINE Alu 3 312 0 2955 144 59 42 chr12 33337336 33337847 -110944642 + MER21A LTR ERV1 403 925 -6 785 240 131 64 chr12 33337888 33338246 -110944243 + MLT2F LTR ERVL 280 661 -2 292 245 254 7 chr12 33338300 33338439 -110944050 - MIR SINE MIR -27 235 63 3342 137 99 91 chr12 33338480 33338520 -110943969 - LTR8 LTR ERV1 0 691 653 1636 171 42 0 chr12 33338520 33338784 -110943705 - AluSx SINE Alu -37 275 1 3342 137 99 91 chr12 33338784 33338885 -110943604 - LTR8 LTR ERV1 -38 653 554 1817 121 0 0 chr12 33338885 33339133 -110943356 - AluSg SINE Alu -1 309 62 3342 137 99 91 chr12 33339133 33339674 -110942815 - LTR8 LTR ERV1 -137 554 2 342 242 11 0 chr12 33339768 33339859 -110942630 + MER34 LTR ERV1 1 92 -450 860 145 0 0 chr12 33339860 33339977 -110942512 + FLAM_C SINE Alu 1 117 -16 1082 224 58 139 chr12 33339977 33340702 -110941787 + PABL_B LTR ERV1 1 667 0 898 159 0 0 chr12 33340725 33340863 -110941626 + AluJb SINE Alu 132 269 -43 691 224 131 73 chr12 33340864 33341261 -110941228 + MER34 LTR ERV1 123 542 0 1437 71 0 112 chr12 33341279 33341524 -110940965 + AluSq SINE Alu 84 303 0 26 30 0 0 chr12 33341863 33341896 -110940593 + AT_rich Low_complexity Low_complexity 1 33 0 255 241 31 93 chr12 33342098 33342260 -110940229 - L1ME4a LINE L1 -22 6083 1175 242 250 13 26 chr12 33342272 33342348 -110940141 - LTR37B LTR ERV1 -184 284 210 372 206 16 0 chr12 33342458 33342521 -110939968 - MER2 DNA MER2_type -2 343 280 1641 156 3 36 chr12 33342536 33342838 -110939651 + AluJb SINE Alu 5 296 -16 1058 90 0 0 chr12 33342840 33342973 -110939516 + AluSp SINE Alu 1 133 -180 2487 88 0 0 chr12 33342976 33343284 -110939205 + AluY SINE Alu 1 308 -3 313 271 141 56 chr12 33343498 33343692 -110938797 - L1M4 LINE L1 -1168 4978 4753 816 181 0 0 chr12 33343692 33343825 -110938664 - FLAM_C SINE Alu 0 133 1 313 271 141 56 chr12 33343825 33343899 -110938590 - L1M4 LINE L1 -1393 4753 4687 29 0 0 0 chr12 33343928 33343957 -110938532 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr12 33344165 33344185 -110938304 + (TA)n Simple_repeat Simple_repeat 2 21 0 513 65 0 0 chr12 33344185 33344247 -110938242 - AluSc SINE Alu -20 289 228 3205 188 17 64 chr12 33344775 33345020 -110937469 + MER84-int LTR ERV1 4282 4537 -1794 2288 97 0 7 chr12 33345020 33345328 -110937161 - AluY SINE Alu -5 306 1 3205 188 17 64 chr12 33345328 33345388 -110937101 + MER84-int LTR ERV1 4537 4598 -1733 1891 152 0 20 chr12 33345388 33345685 -110936804 - AluJo SINE Alu -10 302 12 3205 188 17 64 chr12 33345685 33346185 -110936304 + MER84-int LTR ERV1 4598 5050 -1281 279 220 70 20 chr12 33346191 33346291 -110936198 + MER84-int LTR ERV1 4274 4378 -576 1673 159 55 3 chr12 33346322 33346612 -110935877 + AluJb SINE Alu 1 305 -7 1351 139 14 96 chr12 33346851 33347132 -110935357 - MER61E LTR ERV1 -43 526 269 1002 174 48 48 chr12 33347206 33347413 -110935076 - LTR25 LTR ERV1 -340 454 248 799 149 6 77 chr12 33347401 33347569 -110934920 - MER61E LTR ERV1 -413 156 1 * 291 258 53 73 chr12 33348418 33348569 -110933920 + L1P LINE L1 4901 5048 -1098 207 0 0 0 chr12 33348723 33348746 -110933743 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2458 59 0 0 chr12 33348748 33349036 -110933453 - AluY SINE Alu -23 288 1 1707 133 0 8 chr12 33349115 33349378 -110933111 + MER2 DNA MER2_type 14 274 -71 347 87 0 0 chr12 33349431 33349477 -110933012 + Alu SINE Alu 1 46 -256 901 172 21 0 chr12 33349590 33349735 -110932754 - AluJo SINE Alu -164 148 1 1249 192 98 15 chr12 33349735 33350073 -110932416 - L1ME1 LINE L1 -227 5939 5574 2423 64 0 29 chr12 33350073 33350387 -110932102 + AluY SINE Alu 1 305 -6 1066 142 0 38 chr12 33350399 33350582 -110931907 - AluJo SINE Alu -44 268 93 1283 179 99 27 chr12 33350584 33350847 -110931642 - MER21B LTR ERV1 -312 551 270 921 273 84 51 chr12 33350966 33351576 -110930913 + L2 LINE L2 2671 3307 -6 2229 104 7 0 chr12 33351775 33352072 -110930417 + AluSp SINE Alu 1 299 -14 243 0 0 0 chr12 33352174 33352201 -110930288 + (CA)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr12 33352958 33352979 -110929510 + AT_rich Low_complexity Low_complexity 1 21 0 1449 195 91 75 chr12 33353002 33353386 -110929103 + MLT1B LTR MaLR 1 390 0 26 50 0 0 chr12 33353460 33353500 -110928989 + AT_rich Low_complexity Low_complexity 1 40 0 400 292 70 55 chr12 33353630 33354230 -110928259 + L1M4 LINE L1 3667 4275 -1871 2103 131 80 1 chr12 33354407 33355028 -110927461 + MER4B-int LTR ERV1 4826 5527 -1231 945 219 33 24 chr12 33355043 33355253 -110927236 - AluSg/x SINE Alu -23 289 78 1302 166 9 5 chr12 33355253 33355464 -110927025 - AluSx SINE Alu -100 212 1 802 155 7 35 chr12 33355511 33355653 -110926836 - AluJo SINE Alu -174 138 1 385 109 94 0 chr12 33355659 33355723 -110926766 - Tigger3(Golem) DNA MER2_type -530 2499 2430 969 121 0 0 chr12 33355724 33355856 -110926633 - AluSg/x SINE Alu -21 291 160 260 183 66 22 chr12 33356216 33356353 -110926136 + (TA)n Simple_repeat Simple_repeat 1 143 0 2282 102 42 23 chr12 33357445 33357829 -110924660 - MER61-int LTR ERV1 -3024 2193 1803 2098 141 3 0 chr12 33357832 33358131 -110924358 - AluSx SINE Alu -12 300 1 377 143 0 0 chr12 33358171 33358234 -110924255 + LTR30 LTR ERV1 552 614 -108 1278 213 44 39 chr12 33358260 33358764 -110923725 - LTR10B LTR ERV1 -5 542 1 529 228 66 42 chr12 33358764 33358931 -110923558 - LTR10B-int LTR ERV1 0 6649 6479 2591 166 11 42 chr12 33359977 33360452 -110922037 - L1PB4 LINE L1 -10 6146 5687 1046 139 36 18 chr12 33360583 33360605 -110921884 + AluJo SINE Alu 114 134 -178 2312 92 13 0 chr12 33360605 33360911 -110921578 + AluSq SINE Alu 1 310 -3 1046 139 36 18 chr12 33360911 33361054 -110921435 + AluJo SINE Alu 134 282 -30 948 163 0 6 chr12 33361684 33361844 -110920645 - AluJo SINE Alu -69 243 85 4366 126 63 24 chr12 33361844 33361964 -110920525 - Tigger3b DNA MER2_type -2252 776 662 2094 108 10 0 chr12 33361964 33362261 -110920228 + AluSg SINE Alu 1 300 -10 4366 126 63 24 chr12 33362261 33362887 -110919602 - Tigger3b DNA MER2_type -2366 662 1 278 95 0 24 chr12 33362935 33362977 -110919512 - MLT2B3 LTR ERVL -8 546 506 2842 171 25 23 chr12 33363008 33363521 -110918968 - MLT2B3 LTR ERVL -40 514 1 686 151 19 50 chr12 33363533 33363692 -110918797 + LTR37B LTR ERV1 315 468 0 2212 105 0 3 chr12 33363828 33364123 -110918366 - MER1B DNA MER1_type 0 339 46 1973 111 4 0 chr12 33364149 33364464 -110918025 - AluSx SINE Alu 0 316 1 280 241 0 25 chr12 33364464 33364543 -110917946 - Charlie7 DNA MER1_type -343 2269 2193 1215 271 120 27 chr12 33364558 33365151 -110917338 - Charlie7 DNA MER1_type -1957 655 8 256 241 0 19 chr12 33365356 33365410 -110917079 + MER92C LTR ERV1 4 56 -580 1887 122 25 0 chr12 33365410 33365530 -110916959 + AluSg SINE Alu 4 120 -190 189 0 0 0 chr12 33365530 33365551 -110916938 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 1887 122 25 0 chr12 33365551 33365708 -110916781 + AluSg SINE Alu 120 288 -22 2069 132 0 0 chr12 33365715 33366011 -110916478 + AluSx SINE Alu 1 296 -16 2040 97 23 16 chr12 33366023 33366333 -110916156 + AluSp SINE Alu 1 312 -1 2191 99 0 7 chr12 33366363 33366693 -110915796 + AluY SINE Alu 1 311 0 785 198 95 102 chr12 33366810 33367221 -110915268 + MER92C LTR ERV1 57 552 -2 1541 159 7 61 chr12 33367352 33367523 -110914966 - AluJb SINE Alu -15 297 118 396 0 0 0 chr12 33367523 33367567 -110914922 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2018 124 0 0 chr12 33367567 33367849 -110914640 - AluSx SINE Alu -30 282 1 1541 159 7 61 chr12 33367849 33367972 -110914517 - AluJb SINE Alu -192 120 18 625 120 32 72 chr12 33368183 33368308 -110914181 + MLT1C LTR MaLR 14 133 -334 681 111 10 0 chr12 33368314 33368413 -110914076 - MSTB LTR MaLR -4 428 329 1838 169 60 62 chr12 33368413 33368871 -110913618 + LTR10B LTR ERV1 1 544 -3 1228 194 49 5 chr12 33368872 33369155 -110913334 - MSTB LTR MaLR -99 333 1 1419 217 65 19 chr12 33369155 33369478 -110913011 + MLT1C LTR MaLR 130 467 0 1887 152 3 17 chr12 33369525 33369662 -110912827 + AluJb SINE Alu 1 138 -164 2118 114 0 23 chr12 33369662 33369798 -110912691 + AluSx SINE Alu 1 139 -173 1842 122 66 0 chr12 33369798 33370085 -110912404 + AluSx SINE Alu 1 306 -6 2118 114 0 23 chr12 33370085 33370256 -110912233 + AluSx SINE Alu 139 301 -11 1887 152 3 17 chr12 33370256 33370415 -110912074 + AluJb SINE Alu 138 293 -9 1725 170 3 3 chr12 33370424 33370736 -110911753 + AluJb SINE Alu 1 312 0 762 190 0 0 chr12 33370748 33370890 -110911599 + FLAM_C SINE Alu 2 143 0 2022 89 3 0 chr12 33371050 33371363 -110911126 - AluY SINE Alu 0 314 1 2752 149 8 24 chr12 33371453 33371559 -110910930 - L1MA7 LINE L1 -22 6269 6163 1719 172 0 16 chr12 33371559 33371867 -110910622 - AluJo SINE Alu -9 303 1 2752 149 8 24 chr12 33371867 33372251 -110910238 - L1MA7 LINE L1 -128 6163 5787 399 274 44 15 chr12 33372292 33372427 -110910062 + MLT1A2 LTR MaLR 186 324 -50 1028 172 51 135 chr12 33372437 33372837 -110909652 - MER67C LTR ERV1 -338 372 2 1564 204 3 0 chr12 33373554 33373858 -110908631 + AluJo SINE Alu 1 305 -7 2206 78 34 0 chr12 33373859 33374154 -110908335 + AluSp SINE Alu 1 305 -8 2314 70 0 22 chr12 33374158 33374471 -110908018 + AluY SINE Alu 3 308 -3 2025 136 0 13 chr12 33374792 33375101 -110907388 + AluSx SINE Alu 1 305 -7 1579 149 24 42 chr12 33375225 33375356 -110907133 + AluJb SINE Alu 1 133 -174 2328 77 0 3 chr12 33375356 33375667 -110906822 + AluY SINE Alu 1 310 -1 1579 149 24 42 chr12 33375667 33375847 -110906642 + AluJb SINE Alu 133 307 0 2263 97 0 6 chr12 33376502 33376813 -110905676 + AluSx SINE Alu 1 309 -3 1235 120 5 0 chr12 33377121 33377312 -110905177 - AluSg/x SINE Alu 0 309 118 306 214 135 22 chr12 33377458 33377547 -110904942 + MER21A-int LTR ERV1 2502 4335 -545 281 169 0 78 chr12 33377547 33377624 -110904865 + MER21A-int LTR ERV1 3387 3457 -2489 * 547 225 35 53 chr12 33377618 33377787 -110904702 + MER21A-int LTR ERV1 644 809 -7007 521 328 30 26 chr12 33377872 33378174 -110904315 + MER21A-int LTR ERV1 646 948 -4006 261 304 57 52 chr12 33378363 33378557 -110903932 + MER21A-int LTR ERV1 1768 1912 -6487 610 298 25 47 chr12 33378764 33379083 -110903406 + MER21A-int LTR ERV1 2342 2653 -4023 2216 112 3 0 chr12 33379092 33379404 -110903085 + AluSp SINE Alu 1 313 0 265 357 26 26 chr12 33379694 33379963 -110902526 + MER21A-int LTR ERV1 3457 3725 -4901 2060 128 0 0 chr12 33380157 33380463 -110902026 + AluSc SINE Alu 1 306 -3 2155 124 0 0 chr12 33380468 33380774 -110901715 + AluSx SINE Alu 1 306 -6 1377 294 67 56 chr12 33380848 33381776 -110900713 + MER21A-int LTR ERV1 2897 4199 -1320 2038 135 0 6 chr12 33381776 33382088 -110900401 - AluSg SINE Alu 0 310 1 1377 294 67 56 chr12 33382088 33382265 -110900224 + MER21A-int LTR ERV1 4199 4373 -1146 2183 92 3 0 chr12 33382265 33382559 -110899930 + AluSx SINE Alu 1 295 -17 922 260 44 45 chr12 33382561 33382997 -110899492 + MER21A-int LTR ERV1 4560 5032 -2804 337 253 96 31 chr12 33383166 33383412 -110899077 + MER21A-int LTR ERV1 4733 4801 -1728 1825 146 3 7 chr12 33383413 33383708 -110898781 - AluSx SINE Alu -18 294 1 912 91 8 8 chr12 33383710 33383842 -110898647 - AluSp SINE Alu -181 132 1 939 295 49 46 chr12 33383844 33383961 -110898528 + MER21A-int LTR ERV1 4624 4739 -3017 3552 76 13 2 chr12 33383961 33384409 -110898080 - MLT2A2 LTR ERVL 0 453 1 939 295 49 46 chr12 33384409 33385027 -110897462 + MER21A-int LTR ERV1 4739 6072 -1684 2158 87 7 0 chr12 33385173 33385461 -110897028 - AluSc SINE Alu -19 290 1 1905 92 44 4 chr12 33385476 33385771 -110896718 - AluY SINE Alu 0 306 1 1068 139 12 0 chr12 33385797 33385963 -110896526 + MER21A-int LTR ERV1 7499 7666 -150 1070 76 0 0 chr12 33385967 33386098 -110896391 + AluSc SINE Alu 3 133 -176 1601 90 5 0 chr12 33386098 33386310 -110896179 + AluSq SINE Alu 1 213 -100 801 123 19 45 chr12 33386550 33386704 -110895785 - FRAM SINE Alu -18 158 9 860 252 38 106 chr12 33386726 33387199 -110895290 - MER34 LTR ERV1 0 542 102 914 169 17 11 chr12 33387234 33387246 -110895243 - AluJo/FRAM SINE Alu 0 312 302 1844 129 3 46 chr12 33387246 33387572 -110894917 - AluJb SINE Alu 0 312 1 914 169 17 11 chr12 33387572 33387736 -110894753 - AluJo/FRAM SINE Alu -10 302 135 379 266 11 0 chr12 33387743 33387837 -110894652 - MER34 LTR ERV1 -447 95 1 2027 64 79 7 chr12 33387902 33388182 -110894307 + AluY SINE Alu 1 300 -11 701 262 51 21 chr12 33388303 33388540 -110893949 + MLT2F LTR ERVL 1 244 -419 919 146 277 0 chr12 33388541 33388747 -110893742 + MER21A LTR ERV1 2 264 -667 2981 144 59 42 chr12 33388752 33388781 -110893708 + MER21A LTR ERV1 376 403 -528 2119 99 0 10 chr12 33388781 33389093 -110893396 + AluSx SINE Alu 3 312 0 2981 144 59 42 chr12 33389093 33389604 -110892885 + MER21A LTR ERV1 403 925 -6 807 240 128 62 chr12 33389645 33390003 -110892486 + MLT2F LTR ERVL 280 661 -2 330 237 254 7 chr12 33390057 33390196 -110892293 - MIR SINE MIR -27 235 63 3150 134 101 92 chr12 33390237 33390277 -110892212 - LTR8 LTR ERV1 0 691 653 1550 171 42 0 chr12 33390277 33390541 -110891948 - AluSx SINE Alu -37 275 1 3150 134 101 92 chr12 33390541 33390642 -110891847 - LTR8 LTR ERV1 -38 653 554 1718 122 0 0 chr12 33390642 33390889 -110891600 - AluSg SINE Alu -2 308 62 3150 134 101 92 chr12 33390889 33391430 -110891059 - LTR8 LTR ERV1 -137 554 2 339 242 11 0 chr12 33391524 33391615 -110890874 + MER34 LTR ERV1 1 92 -450 816 145 0 0 chr12 33391616 33391733 -110890756 + FLAM_C SINE Alu 1 117 -16 345 286 62 116 chr12 33391733 33392138 -110890351 + PABL_B LTR ERV1 2 384 -283 1086 233 74 19 chr12 33392150 33392459 -110890030 + PABL_B LTR ERV1 342 667 0 853 159 0 0 chr12 33392482 33392620 -110889869 + AluJb SINE Alu 132 269 -43 663 224 131 73 chr12 33392621 33393018 -110889471 + MER34 LTR ERV1 123 542 0 1368 71 0 112 chr12 33393036 33393281 -110889208 + AluSq SINE Alu 84 303 0 21 0 0 0 chr12 33393395 33393416 -110889073 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr12 33393625 33393658 -110888831 + AT_rich Low_complexity Low_complexity 1 33 0 237 241 31 93 chr12 33393860 33394022 -110888467 - L1ME4a LINE L1 -22 6083 1175 385 191 16 0 chr12 33394220 33394283 -110888206 - MER2 DNA MER2_type -2 343 280 1485 154 17 37 chr12 33394298 33394596 -110887893 + AluJb SINE Alu 5 296 -16 1598 151 22 14 chr12 33394598 33394734 -110887755 + AluJo SINE Alu 1 135 -177 2223 88 13 0 chr12 33394734 33395040 -110887449 + AluSq SINE Alu 1 310 -3 1598 151 22 14 chr12 33395040 33395181 -110887308 + AluJo SINE Alu 135 280 -32 2371 66 3 0 chr12 33395181 33395482 -110887007 - AluY SINE Alu -9 302 1 1719 122 0 8 chr12 33395536 33395799 -110886690 - MER2 DNA MER2_type -71 274 14 2480 74 0 0 chr12 33395878 33396189 -110886300 + AluY SINE Alu 1 311 0 422 274 112 88 chr12 33396303 33396600 -110885889 - L1M4 LINE L1 -1074 5072 4761 776 181 0 0 chr12 33396600 33396733 -110885756 - FLAM_C SINE Alu 0 133 1 422 274 112 88 chr12 33396733 33396855 -110885634 - L1M4 LINE L1 -1385 4761 4643 198 0 0 0 chr12 33397067 33397089 -110885400 + (TA)n Simple_repeat Simple_repeat 2 23 0 1296 95 0 0 chr12 33397089 33397257 -110885232 - AluSc SINE Alu -22 287 120 652 111 0 0 chr12 33397257 33397347 -110885142 + AluSp/q SINE Alu 213 302 -11 237 194 0 0 chr12 33397348 33397384 -110885105 + Alu SINE Alu 134 169 -134 1387 80 0 0 chr12 33397384 33397584 -110884905 + AluY SINE Alu 114 313 0 296 298 35 18 chr12 33397775 33397889 -110884600 - L1P LINE L1 -1130 5016 4901 808 149 6 77 chr12 33398738 33398906 -110883583 + MER61E LTR ERV1 1 156 -413 * 1006 174 48 48 chr12 33398894 33399101 -110883388 + LTR25 LTR ERV1 248 454 -340 1364 139 14 96 chr12 33399175 33399456 -110883033 + MER61E LTR ERV1 269 526 -43 1552 162 55 3 chr12 33399695 33399985 -110882504 - AluJb SINE Alu -7 305 1 274 220 70 20 chr12 33400016 33400116 -110882373 - LTR19A-int LTR ERV1 -576 4378 4274 3884 159 17 51 chr12 33400122 33400622 -110881867 - LTR19A-int LTR ERV1 -1281 5050 4535 1724 156 0 20 chr12 33400622 33400917 -110881572 + AluJo SINE Alu 12 300 -12 3884 159 17 51 chr12 33400917 33400977 -110881512 - LTR19A-int LTR ERV1 -1796 4535 4475 2217 96 0 6 chr12 33400977 33401289 -110881200 + AluY SINE Alu 1 310 -1 3884 159 17 51 chr12 33401289 33401538 -110880951 - LTR19A-int LTR ERV1 -1856 4475 4267 1394 152 22 40 chr12 33401613 33401890 -110880599 - AluJo SINE Alu -11 301 30 563 215 93 45 chr12 33401904 33402102 -110880387 + MER65-int LTR ERV1 351 1917 -4391 876 131 0 15 chr12 33402147 33402284 -110880205 - AluJo SINE Alu -177 135 1 419 274 40 74 chr12 33402293 33402468 -110880021 + MER65-int LTR ERV1 1932 2100 -4231 609 252 0 0 chr12 33402488 33402615 -110879874 + FLAM_A SINE Alu 4 130 -3 607 191 52 33 chr12 33402642 33402852 -110879637 + LTR57-int LTR ERVL 883 1096 -4247 * 710 176 51 33 chr12 33402648 33402927 -110879562 + MER65-int LTR ERV1 1186 3129 -3202 258 159 0 63 chr12 33402930 33402993 -110879496 + MER65-int LTR ERV1 2436 2494 -2377 710 153 0 0 chr12 33403057 33403168 -110879321 - AluSg/x SINE Alu -15 297 187 281 245 133 0 chr12 33403188 33403286 -110879203 - LTR19A-int LTR ERV1 -4698 1633 1523 1938 137 23 0 chr12 33403388 33403687 -110878802 - AluSx SINE Alu -5 307 2 51 31 0 0 chr12 33403806 33403871 -110878618 + AT_rich Low_complexity Low_complexity 1 65 0 279 181 48 48 chr12 33404206 33404311 -110878178 - LTR19A-int LTR ERV1 -4937 1394 1290 1342 192 58 31 chr12 33404654 33404946 -110877543 + AluJb SINE Alu 1 300 -2 252 257 88 68 chr12 33404953 33405101 -110877388 - LTR19A-int LTR ERV1 -4809 1522 1372 2204 87 0 10 chr12 33405585 33405885 -110876604 + AluSg SINE Alu 5 301 -9 262 229 16 0 chr12 33406015 33406076 -110876413 - MER34B LTR ERV1 0 565 504 276 289 37 37 chr12 33406170 33406305 -110876184 - LTR19A-int LTR ERV1 -7400 137 3 1787 153 20 7 chr12 33406371 33406671 -110875818 + AluJb SINE Alu 1 304 -8 1038 159 0 32 chr12 33407275 33407448 -110875041 - AluJb SINE Alu -10 302 134 1874 139 0 31 chr12 33407448 33407630 -110874859 - AluSx SINE Alu -3 309 140 2132 104 14 0 chr12 33407630 33407927 -110874562 - AluSg SINE Alu -9 301 1 1874 139 0 31 chr12 33407927 33408061 -110874428 - AluSx SINE Alu -172 140 3 1038 159 0 32 chr12 33408061 33408076 -110874413 - AluJb SINE Alu -178 134 120 2192 93 3 7 chr12 33408228 33408519 -110873970 + AluSg SINE Alu 1 290 -20 2592 161 56 99 chr12 33408664 33408772 -110873717 + MER21B LTR ERV1 1 112 -751 849 110 0 0 chr12 33408772 33408890 -110873599 - FLAM_C SINE Alu -15 118 1 2592 161 56 99 chr12 33408890 33409357 -110873132 + MER21B LTR ERV1 112 551 -312 1022 142 0 38 chr12 33409359 33409542 -110872947 + AluJo SINE Alu 93 268 -44 2534 51 0 0 chr12 33409553 33409864 -110872625 - AluY SINE Alu 0 311 1 1726 53 0 22 chr12 33409870 33410096 -110872393 - AluY SINE Alu -15 296 76 209 292 10 42 chr12 33410234 33410330 -110872159 + T-rich Low_complexity Low_complexity 4 96 0 * 258 257 54 0 chr12 33410260 33410334 -110872155 + CT-rich Low_complexity Low_complexity 3 80 0 332 87 0 0 chr12 33410400 33410446 -110872043 - MADE1 DNA Mariner -5 75 30 2132 97 7 3 chr12 33410447 33410745 -110871744 + AluSq SINE Alu 1 299 -14 2126 130 7 3 chr12 33411435 33411734 -110870755 + AluSp SINE Alu 1 300 -13 1458 183 18 1 chr12 33412119 33412518 -110869971 - LTR19A LTR ERV1 0 486 1 15559 77 7 12 chr12 33412518 33413336 -110869153 - HERVFH19I LTR ERV1 0 7719 6899 2107 103 0 38 chr12 33413336 33413652 -110868837 + AluSc SINE Alu 1 305 0 15559 77 7 12 chr12 33413652 33414871 -110867618 - HERVFH19I LTR ERV1 -820 6899 5690 3029 100 107 61 chr12 33414871 33415413 -110867076 - LTR4 LTR ERV1 0 596 30 1510 94 0 0 chr12 33415419 33415621 -110866868 - HERVFH19I LTR ERV1 -2026 5693 5492 2127 102 63 0 chr12 33415621 33415906 -110866583 + AluSg SINE Alu 1 303 -7 1008 183 11 6 chr12 33415912 33416087 -110866402 + FRAM SINE Alu 1 169 -7 560 143 11 11 chr12 33416097 33416188 -110866301 + MLT1A2 LTR MaLR 284 374 0 2104 142 0 0 chr12 33416275 33416570 -110865919 - AluSx SINE Alu -17 295 1 315 275 59 77 chr12 33416890 33417038 -110865451 - L1MEc LINE L1 -4620 1776 1627 1740 121 0 0 chr12 33417038 33417277 -110865212 + AluSg SINE Alu 1 239 -71 315 275 59 77 chr12 33417277 33417430 -110865059 - L1MEc LINE L1 -4769 1627 1481 2241 91 0 20 chr12 33417430 33417728 -110864761 + AluSx SINE Alu 6 297 -15 315 275 59 77 chr12 33417728 33417829 -110864660 - L1MEc LINE L1 -4915 1481 1380 362 249 153 84 chr12 33417879 33417977 -110864512 + L1ME LINE L1 2429 2519 -3627 2223 116 10 0 chr12 33417977 33418279 -110864210 + AluSp SINE Alu 1 305 -8 362 249 153 84 chr12 33418279 33418526 -110863963 + L1ME LINE L1 2519 2798 -3348 1071 175 53 5 chr12 33418527 33418733 -110863756 - Tigger1 DNA MER2_type -1 2417 2202 900 152 13 25 chr12 33418722 33418880 -110863609 - Tigger1 DNA MER2_type -2261 157 2 * 341 244 106 74 chr12 33418944 33419004 -110863485 + L1ME LINE L1 2900 2957 -3189 2578 37 0 0 chr12 33419004 33419300 -110863189 + AluY SINE Alu 1 296 -15 341 244 106 74 chr12 33419300 33419362 -110863127 + L1ME LINE L1 2957 3016 -3130 2228 109 0 3 chr12 33419362 33419675 -110862814 + AluSx SINE Alu 1 312 0 341 244 106 74 chr12 33419675 33419768 -110862721 + L1ME LINE L1 3016 3123 -3023 578 211 14 16 chr12 33419803 33419950 -110862539 + L1ME LINE L1 5305 5456 -698 491 205 85 2 chr12 33419979 33420118 -110862371 + L1ME1 LINE L1 5411 5559 -605 963 246 85 58 chr12 33420123 33420187 -110862302 - MSTC LTR MaLR -3 425 364 2509 72 0 3 chr12 33420187 33420494 -110861995 - AluY SINE Alu -5 306 1 2216 102 17 0 chr12 33420494 33420786 -110861703 - AluSx SINE Alu -13 299 3 963 246 85 58 chr12 33420786 33421051 -110861438 - MSTC LTR MaLR -356 72 81 1825 181 0 0 chr12 33421051 33421344 -110861145 - AluJo SINE Alu -19 293 1 963 246 85 58 chr12 33421344 33421412 -110861077 - MSTC LTR MaLR -347 81 16 1166 173 50 167 chr12 33421415 33421778 -110860711 + L1ME1 LINE L1 5550 5845 -321 1973 131 41 0 chr12 33421778 33422069 -110860420 + AluSq SINE Alu 1 303 -10 1166 173 50 167 chr12 33422069 33422185 -110860304 + L1ME1 LINE L1 5845 5973 -193 2191 117 7 0 chr12 33422952 33423405 -110859084 - AluSx SINE Alu 0 455 1 201 138 0 0 chr12 33423430 33423459 -110859030 + (TTCC)n Simple_repeat Simple_repeat 1 29 0 396 208 13 0 chr12 33423513 33423590 -110858899 + MER58 DNA MER1_type 31 108 -233 240 147 73 0 chr12 33423714 33423782 -110858707 + CT-rich Low_complexity Low_complexity 3 75 0 1358 233 81 40 chr12 33424202 33424416 -110858073 - HAL1 LINE L1 -982 1525 1321 2181 116 3 3 chr12 33424416 33424719 -110857770 - AluSx SINE Alu -9 303 1 1358 233 81 40 chr12 33424719 33425023 -110857466 - HAL1 LINE L1 -1186 1321 986 926 97 0 0 chr12 33425545 33425659 -110856830 - AluSq/x SINE Alu -198 114 1 1992 107 42 7 chr12 33425659 33425948 -110856541 - AluSc SINE Alu -10 299 1 882 284 90 35 chr12 33425991 33426445 -110856044 - HAL1 LINE L1 -1553 954 476 300 319 22 22 chr12 33426505 33426643 -110855846 - HAL1 LINE L1 -2226 281 144 2240 109 6 6 chr12 33426647 33426959 -110855530 + AluSx SINE Alu 1 312 0 270 95 0 0 chr12 33426963 33427005 -110855484 + THE1C-int LTR MaLR 1539 1580 0 2254 147 16 21 chr12 33427007 33427382 -110855107 + THE1C LTR MaLR 3 375 0 2010 134 0 7 chr12 33427426 33427729 -110854760 + AluSx SINE Alu 1 301 0 689 142 14 71 chr12 33427733 33427874 -110854615 + FLAM_C SINE Alu 1 133 0 2134 87 31 3 chr12 33427959 33428246 -110854243 - AluSg SINE Alu -15 295 1 450 167 13 26 chr12 33428638 33428716 -110853773 + MER2 DNA MER2_type 267 343 -2 330 26 0 0 chr12 33428716 33428755 -110853734 + (TG)n Simple_repeat Simple_repeat 2 40 0 1882 154 3 14 chr12 33428805 33429098 -110853391 - AluJo SINE Alu -22 290 1 2225 123 113 38 chr12 33429117 33429168 -110853321 - MSTA LTR MaLR 0 428 382 2251 109 3 0 chr12 33429168 33429462 -110853027 - AluSp SINE Alu -9 304 10 2225 123 113 38 chr12 33429462 33429808 -110852681 - MSTA LTR MaLR -46 382 1 26 0 0 0 chr12 33429835 33429861 -110852628 + AT_rich Low_complexity Low_complexity 1 26 0 261 295 0 0 chr12 33429883 33429961 -110852528 - L1M4 LINE L1 -3216 2930 2853 2457 81 7 0 chr12 33429975 33430273 -110852216 - AluSq SINE Alu -13 300 1 530 274 99 31 chr12 33430603 33430826 -110851663 - MIR SINE MIR -2 260 23 248 51 0 26 chr12 33431445 33431484 -110851005 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1983 138 0 3 chr12 33431486 33431768 -110850721 - AluSx SINE Alu -31 281 1 542 150 17 83 chr12 33431944 33431992 -110850497 - L1MB4 LINE L1 0 6180 6130 2471 60 0 10 chr12 33431992 33432158 -110850331 - AluY SINE Alu -13 298 135 2464 50 3 14 chr12 33432158 33432455 -110850034 - AluY SINE Alu -17 294 1 2471 60 0 10 chr12 33432455 33432589 -110849900 - AluY SINE Alu -176 135 1 542 150 17 83 chr12 33432589 33432660 -110849829 - L1MB4 LINE L1 -50 6130 6069 657 285 61 123 chr12 33432661 33433117 -110849372 - ERVL LTR ERVL -3431 2333 1906 1499 224 52 12 chr12 33433442 33433786 -110848703 + MLT1A2 LTR MaLR 17 374 0 475 82 14 41 chr12 33434094 33434167 -110848322 + L1M3 LINE L1 5682 5752 -428 3209 97 30 49 chr12 33434248 33434755 -110847734 - LOR1a LTR ERV1 0 497 1 252 304 20 39 chr12 33435337 33435439 -110847050 - L2 LINE L2 -10 3303 3204 318 223 43 10 chr12 33436265 33436398 -110846091 + L1MC4a LINE L1 5335 5472 -698 3112 47 8 3 chr12 33436483 33436865 -110845624 - L1PA8 LINE L1 -1 6171 5788 827 207 141 75 chr12 33436894 33437242 -110845247 + LTR33A LTR ERVL 3 373 -150 1627 163 0 66 chr12 33437245 33437431 -110845058 - AluSq SINE Alu -14 299 141 2520 62 0 13 chr12 33437431 33437739 -110844750 - AluY SINE Alu -7 304 1 1627 163 0 66 chr12 33437739 33437872 -110844617 - AluSq SINE Alu -172 141 1 21 0 0 0 chr12 33437877 33437898 -110844591 + AT_rich Low_complexity Low_complexity 1 21 0 517 240 174 15 chr12 33437941 33438137 -110844352 + L1MC4a LINE L1 5685 5911 -1897 2106 109 0 37 chr12 33438162 33438483 -110844006 + AluSg SINE Alu 1 309 -1 456 176 0 0 chr12 33438489 33438563 -110843926 + AluS SINE Alu 1 74 -238 1850 89 150 231 chr12 33438565 33439191 -110843298 - LTR12 LTR ERV1 -135 2021 57 232 250 0 0 chr12 33439195 33439247 -110843242 - LTR30 LTR ERV1 -670 52 1 1353 179 8 0 chr12 33439247 33439482 -110843007 + AluJb SINE Alu 71 307 -5 503 210 75 70 chr12 33439520 33439706 -110842783 + MIR SINE MIR 11 197 -65 890 227 9 70 chr12 33439707 33439760 -110842729 + MER58A DNA MER1_type 1 56 -2364 2262 101 0 0 chr12 33439760 33440046 -110842443 - AluSc SINE Alu -22 287 2 890 227 9 70 chr12 33440046 33440221 -110842268 + MER58A DNA MER1_type 56 215 -9 286 240 0 27 chr12 33440228 33440303 -110842186 + MIR SINE MIR 189 261 -1 2319 101 0 0 chr12 33440449 33440746 -110841743 + AluSx SINE Alu 1 297 -15 41 36 0 0 chr12 33440754 33440809 -110841680 + AT_rich Low_complexity Low_complexity 1 55 0 2250 115 0 3 chr12 33440879 33441184 -110841305 + AluSq SINE Alu 1 304 -9 320 226 199 77 chr12 33441498 33441679 -110840810 - MLT1H LTR MaLR -3 552 350 5011 150 32 16 chr12 33441839 33442409 -110840080 + MER4D LTR ERV1 1 591 -312 2540 60 3 22 chr12 33442409 33442725 -110839764 - AluY SINE Alu -1 310 1 5011 150 32 16 chr12 33442725 33443035 -110839454 + MER4D LTR ERV1 591 895 -8 377 192 173 77 chr12 33444034 33444190 -110838299 - MLT1H LTR MaLR -378 171 1 913 260 63 85 chr12 33444451 33445050 -110837439 + PABL_B LTR ERV1 82 667 0 371 209 36 45 chr12 33445276 33445386 -110837103 - MER34 LTR ERV1 -3 539 431 2473 72 3 19 chr12 33445394 33445712 -110836777 - AluSp SINE Alu 0 313 1 2311 52 3 24 chr12 33445727 33446039 -110836450 - AluY SINE Alu 0 306 1 304 252 58 0 chr12 33446041 33446144 -110836345 - MER34B LTR ERV1 -98 467 359 25 0 0 0 chr12 33446228 33446253 -110836236 + AT_rich Low_complexity Low_complexity 1 25 0 834 156 0 8 chr12 33446253 33446381 -110836108 - FLAM_C SINE Alu -16 127 1 333 308 19 0 chr12 33446563 33446667 -110835822 + CT-rich Low_complexity Low_complexity 2 107 0 260 272 63 7 chr12 33447393 33447496 -110834993 + LTR23 LTR ERV1 331 423 -14 1063 169 25 108 chr12 33447499 33447766 -110834723 - MER34B LTR ERV1 -197 368 123 2404 68 0 17 chr12 33447766 33448061 -110834428 + AluY SINE Alu 3 292 -19 1063 169 25 108 chr12 33448061 33448072 -110834417 - MER34B LTR ERV1 -442 123 113 938 182 6 0 chr12 33448075 33448240 -110834249 + AluJb SINE Alu 141 306 -6 475 202 11 51 chr12 33448240 33448307 -110834182 - MER34 LTR ERV1 -404 138 96 4068 189 50 18 chr12 33448307 33449106 -110833383 + LTR1B LTR ERV1 1 825 -1 475 202 11 51 chr12 33449106 33449189 -110833300 - MER34 LTR ERV1 -446 96 11 1186 151 0 11 chr12 33449584 33449769 -110832720 + AluJb SINE Alu 1 183 -129 3115 160 22 61 chr12 33449771 33450408 -110832081 + LTR9 LTR ERV1 1 612 0 239 204 0 0 chr12 33450408 33450462 -110832027 + AluSg/x SINE Alu 182 235 -67 2313 104 10 0 chr12 33450681 33450980 -110831509 + AluSx SINE Alu 1 302 -10 2432 77 0 10 chr12 33450981 33451291 -110831198 + AluY SINE Alu 1 307 -4 2511 68 0 0 chr12 33451293 33451600 -110830889 + AluY SINE Alu 1 307 -4 4697 181 24 23 chr12 33451789 33452649 -110829840 + MER21B LTR ERV1 1 861 -2 279 0 0 0 chr12 33452776 33452807 -110829682 + (TG)n Simple_repeat Simple_repeat 2 32 0 723 183 124 112 chr12 33452975 33453331 -110829158 - LTR37A LTR ERV1 -64 362 3 1746 161 40 7 chr12 33453393 33453692 -110828797 + AluJb SINE Alu 1 309 -3 360 222 111 16 chr12 33453841 33453967 -110828522 + MIR SINE MIR 22 159 -103 2198 110 0 0 chr12 33453989 33454302 -110828187 + AluSx SINE Alu 1 313 0 949 185 42 16 chr12 33454304 33454493 -110827996 + MER93b LTR ERV1 12 205 -168 2433 202 34 45 chr12 33454498 33454652 -110827837 - L1M4 LINE L1 -1252 4894 4740 2089 113 38 0 chr12 33454652 33454943 -110827546 - AluSx SINE Alu -10 302 1 2433 202 34 45 chr12 33454943 33455129 -110827360 - L1M4 LINE L1 -1406 4740 4553 1757 164 0 53 chr12 33455129 33455306 -110827183 - AluJo SINE Alu -11 301 147 2171 121 0 16 chr12 33455306 33455620 -110826869 - AluSx SINE Alu -3 309 1 1757 164 0 53 chr12 33455620 33455760 -110826729 - AluJo SINE Alu -165 147 1 2433 202 34 45 chr12 33455760 33456057 -110826432 - L1M4 LINE L1 -1593 4553 4263 2344 91 0 3 chr12 33456126 33456424 -110826065 - AluSg1 SINE Alu -12 297 1 866 143 0 8 chr12 33456497 33456630 -110825859 - FLAM_A SINE Alu 0 133 2 311 301 48 6 chr12 33456944 33457110 -110825379 + L1MC/D LINE L1 4858 5030 -1116 2196 102 6 38 chr12 33457136 33457449 -110825040 + AluSx SINE Alu 1 303 -9 263 71 24 0 chr12 33457461 33457503 -110824986 - MADE1 DNA Mariner -36 44 2 1975 233 23 30 chr12 33457503 33458166 -110824323 + L1MC/D LINE L1 5038 5697 -753 2348 51 0 64 chr12 33458176 33458489 -110824000 - AluY SINE Alu -18 293 1 1305 92 0 0 chr12 33458491 33458654 -110823835 - AluSg/x SINE Alu -6 304 142 1693 176 3 23 chr12 33458698 33459005 -110823484 - AluJo SINE Alu -11 301 1 2530 74 0 3 chr12 33459109 33459419 -110823070 - AluY SINE Alu -2 309 1 21 36 0 0 chr12 33459515 33459543 -110822946 + AT_rich Low_complexity Low_complexity 1 28 0 612 221 32 11 chr12 33459595 33459785 -110822704 + L1ME3 LINE L1 5119 5312 -834 2150 126 7 7 chr12 33459785 33460095 -110822394 + AluSx SINE Alu 1 310 -2 1226 290 47 34 chr12 33460098 33460739 -110821750 + L1ME3 LINE L1 5303 5951 -211 439 183 39 19 chr12 33461003 33461107 -110821382 - MER5B DNA MER1_type -5 173 68 2597 193 30 8 chr12 33461195 33461724 -110820765 - L1MC4a LINE L1 0 7808 7268 2568 106 19 3 chr12 33461922 33462291 -110820198 + THE1C LTR MaLR 1 375 0 886 213 46 0 chr12 33462499 33462696 -110819793 - L1MD3 LINE L1 -8 7987 7782 2260 85 0 4 chr12 33462746 33463028 -110819461 + AluSg SINE Alu 7 316 0 196 69 0 0 chr12 33463028 33463057 -110819432 + (TAAA)n Simple_repeat Simple_repeat 3 180 0 302 217 239 94 chr12 33463082 33463126 -110819363 - MLT1H LTR MaLR -341 208 172 2294 91 0 16 chr12 33463126 33463143 -110819346 - AluSq SINE Alu -11 302 286 250 33 0 0 chr12 33463143 33463173 -110819316 + (TTTG)n Simple_repeat Simple_repeat 2 104 0 2294 91 0 16 chr12 33463173 33463462 -110819027 - AluSq SINE Alu -27 286 1 302 217 239 94 chr12 33463462 33463555 -110818934 - MLT1H LTR MaLR -377 172 51 1003 211 53 94 chr12 33463897 33463993 -110818496 - Charlie2 DNA MER1_type -93 2769 2671 2141 108 0 4 chr12 33463993 33464272 -110818217 + AluSg SINE Alu 1 278 -32 180 0 0 0 chr12 33464272 33464292 -110818197 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1003 211 53 94 chr12 33464292 33464587 -110817902 - Charlie2 DNA MER1_type -190 2672 2400 2443 73 3 0 chr12 33464587 33464887 -110817602 - AluY SINE Alu -10 301 1 1003 211 53 94 chr12 33464887 33465005 -110817484 - Charlie2 DNA MER1_type -462 2400 2279 2305 102 0 0 chr12 33465245 33465538 -110816951 + AluSg SINE Alu 1 293 -17 2223 106 20 0 chr12 33465823 33466115 -110816374 + AluSq SINE Alu 3 300 -13 21 0 0 0 chr12 33466201 33466222 -110816267 + AT_rich Low_complexity Low_complexity 1 21 0 256 200 290 0 chr12 33466951 33467051 -110815438 - Charlie2 DNA MER1_type -587 2275 2147 2268 95 0 3 chr12 33467069 33467381 -110815108 + AluSx SINE Alu 1 311 0 2222 193 38 39 chr12 33467386 33467964 -110814525 + MER92B LTR ERV1 1 635 -1 1157 196 20 12 chr12 33467965 33468215 -110814274 - Charlie2 DNA MER1_type -754 2108 1857 410 283 142 31 chr12 33468219 33468445 -110814044 - Charlie2 DNA MER1_type -2537 325 75 263 173 0 0 chr12 33469109 33469161 -110813328 - L1MB8 LINE L1 -5 6173 6122 741 198 117 25 chr12 33469193 33469390 -110813099 - L1MB4 LINE L1 -6 6174 5960 3922 113 11 0 chr12 33469390 33469938 -110812551 - MER41A LTR ERV1 0 554 1 8906 100 29 7 chr12 33469938 33470103 -110812386 - MER41A-int LTR ERV1 -2 5944 5784 2078 113 0 7 chr12 33470103 33470411 -110812078 + AluSx SINE Alu 1 306 0 8906 100 29 7 chr12 33470411 33471496 -110810993 - MER41A-int LTR ERV1 -162 5784 4666 7985 127 50 32 chr12 33471494 33472899 -110809590 - MER41A-int LTR ERV1 -1249 3766 2333 * 2034 161 0 0 chr12 33472899 33473209 -110809280 + AluSx SINE Alu 1 310 -2 7985 127 50 32 chr12 33473209 33473253 -110809236 - MER41A-int LTR ERV1 -2682 2333 2291 5111 130 58 3 chr12 33473253 33474013 -110808476 - MER41A-int LTR ERV1 -5144 802 1 1802 64 39 0 chr12 33474098 33474331 -110808158 - MER41A LTR ERV1 0 554 313 2351 74 13 0 chr12 33474331 33474629 -110807860 + AluY SINE Alu 1 302 -9 683 125 265 0 chr12 33474686 33474822 -110807667 - AluSg/x SINE Alu -9 300 129 2224 117 7 0 chr12 33474827 33475127 -110807362 - AluSp SINE Alu -11 302 1 288 0 0 0 chr12 33475708 33475740 -110806749 + (CAT)n Simple_repeat Simple_repeat 2 33 0 838 251 54 63 chr12 33476233 33476503 -110805986 + LTR40b LTR ERVL 131 399 -63 2303 103 0 3 chr12 33476503 33476803 -110805686 + AluSx SINE Alu 1 299 -13 838 251 54 63 chr12 33476803 33476866 -110805623 + LTR40b LTR ERVL 399 461 -1 312 176 0 108 chr12 33477226 33477328 -110805161 + L1MC5 LINE L1 6710 6800 -1161 2070 122 3 24 chr12 33477341 33477696 -110804793 - AluSx SINE Alu 0 312 1 963 129 14 7 chr12 33477740 33477880 -110804609 - AluSq/x SINE Alu -172 141 1 1114 228 91 51 chr12 33477902 33477921 -110804568 - MER92A LTR ERV1 -47 365 348 2058 104 119 6 chr12 33477921 33478258 -110804231 - THE1C LTR MaLR 0 375 1 1114 228 91 51 chr12 33478258 33478589 -110803900 - MER92A LTR ERV1 -64 348 1 2200 125 0 3 chr12 33478598 33478909 -110803580 + AluSg SINE Alu 1 310 0 248 214 0 0 chr12 33478915 33478957 -110803532 + L1MC4 LINE L1 6853 6894 -1148 914 204 0 0 chr12 33479129 33479291 -110803198 - FRAM SINE Alu -15 161 1 353 297 0 7 chr12 33479391 33479529 -110802960 + L1M4 LINE L1 4408 4544 -1602 2292 58 0 105 chr12 33480070 33480412 -110802077 + AluSc SINE Alu 1 306 -3 414 247 69 57 chr12 33480599 33480931 -110801558 + L1M4 LINE L1 4997 5332 -814 508 85 0 73 chr12 33480978 33481060 -110801429 + AluSg SINE Alu 5 80 -230 1268 209 4 0 chr12 33481116 33481346 -110801143 - AluJo SINE Alu -68 244 14 1154 74 6 0 chr12 33481358 33481520 -110800969 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 383 135 0 0 chr12 33481522 33481574 -110800915 - AluJ/FRAM SINE Alu -21 281 230 882 21 0 0 chr12 33481578 33481675 -110800814 + AluYb8 SINE Alu 154 250 -68 2125 111 10 10 chr12 33481706 33482003 -110800486 + AluSg SINE Alu 1 297 -13 429 73 13 265 chr12 33482062 33482151 -110800338 - Charlie5 DNA MER1_type -2 2583 2580 1575 161 15 96 chr12 33482151 33482475 -110800014 + AluJo SINE Alu 1 298 -14 429 73 13 265 chr12 33482475 33482536 -110799953 - Charlie5 DNA MER1_type -5 2580 2505 1814 166 0 33 chr12 33482600 33482907 -110799582 - AluJo SINE Alu -15 297 1 254 289 13 13 chr12 33482928 33483004 -110799485 + MIR SINE MIR 4 79 -183 545 242 45 13 chr12 33483016 33483173 -110799316 - MIR SINE MIR -66 196 35 1867 170 73 3 chr12 33483523 33483864 -110798625 + MLT1A1 LTR MaLR 1 365 0 2123 84 0 75 chr12 33484213 33484545 -110797944 + AluSx SINE Alu 1 307 -5 2444 65 0 36 chr12 33484548 33484857 -110797632 + AluY SINE Alu 1 298 -13 2059 123 9 25 chr12 33484928 33485244 -110797245 - AluSx SINE Alu -1 311 1 2234 83 24 3 chr12 33485650 33485939 -110796550 + AluSc SINE Alu 1 295 -14 2050 106 0 14 chr12 33485949 33486233 -110796256 + AluSx SINE Alu 33 312 0 749 256 96 41 chr12 33486718 33487011 -110795478 + Charlie2 DNA MER1_type 1 309 -2553 1965 133 30 0 chr12 33487095 33487405 -110795084 + AluSc SINE Alu 1 318 0 279 0 0 0 chr12 33487566 33487597 -110794892 + (CA)n Simple_repeat Simple_repeat 2 32 0 2138 123 0 43 chr12 33487740 33488066 -110794423 - AluSx SINE Alu 0 312 1 851 190 41 10 chr12 33489111 33489317 -110793172 + MER61D LTR ERV1 338 484 -17 921 156 0 0 chr12 33489415 33489550 -110792939 + AluSq/x SINE Alu 1 135 -177 1620 172 61 11 chr12 33489550 33489829 -110792660 + AluSx SINE Alu 1 293 -19 1879 158 3 13 chr12 33489975 33490273 -110792216 - AluSx SINE Alu -17 295 1 6409 150 5 24 chr12 33490286 33491400 -110791089 - L1PB2 LINE L1 0 6151 5018 2133 136 0 0 chr12 33491400 33491695 -110790794 - AluSg SINE Alu -15 295 1 6409 150 5 24 chr12 33491695 33491738 -110790751 - L1PB2 LINE L1 -1133 5018 4976 2272 89 17 0 chr12 33491738 33492040 -110790449 - AluSx SINE Alu 0 312 6 6409 150 5 24 chr12 33492040 33492577 -110789912 - L1PB2 LINE L1 -1175 4976 4506 2138 124 0 0 chr12 33492577 33492894 -110789595 - AluSx SINE Alu 0 312 1 6409 150 5 24 chr12 33492894 33493269 -110789220 - L1PB2 LINE L1 -1645 4506 4125 515 273 67 64 chr12 33493600 33493856 -110788633 + MER68 LTR ERV1 148 447 -158 1091 183 50 5 chr12 33493869 33494071 -110788418 - MER61E LTR ERV1 -4 565 355 2185 106 3 10 chr12 33494072 33494396 -110788093 - AluSq SINE Alu 0 313 1 209 57 29 0 chr12 33494400 33494435 -110788054 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2227 106 0 0 chr12 33494437 33494719 -110787770 - AluSx SINE Alu -30 282 1 6018 112 28 50 chr12 33494839 33494946 -110787543 + Tigger1 DNA MER2_type 1075 1183 -1235 2099 148 0 0 chr12 33494946 33495249 -110787240 + AluSx SINE Alu 1 303 -9 6018 112 28 50 chr12 33495249 33495352 -110787137 + Tigger1 DNA MER2_type 1183 1287 -1131 1800 166 3 7 chr12 33495352 33495641 -110786848 - AluJb SINE Alu -24 288 1 6018 112 28 50 chr12 33495641 33496418 -110786071 + Tigger1 DNA MER2_type 1287 2042 -376 6227 149 37 27 chr12 33496420 33496728 -110785761 + L1PB2 LINE L1 4019 4323 -1828 305 62 21 0 chr12 33496728 33496776 -110785713 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 6227 149 37 27 chr12 33496776 33497048 -110785441 + L1PB2 LINE L1 4323 4591 -1560 2644 52 0 0 chr12 33497048 33497355 -110785134 + AluY SINE Alu 1 307 -4 6227 149 37 27 chr12 33497355 33498881 -110783608 + L1PB2 LINE L1 4591 6148 -3 2040 159 15 40 chr12 33498883 33499278 -110783211 + Tigger1 DNA MER2_type 2019 2403 -15 2198 114 0 10 chr12 33499349 33499647 -110782842 - AluSx SINE Alu -15 297 3 2515 65 0 0 chr12 33499664 33499956 -110782533 - AluSq SINE Alu -21 292 1 1650 168 33 7 chr12 33500245 33500561 -110781928 + AluSx SINE Alu 3 325 0 362 288 69 56 chr12 33500892 33501198 -110781291 + MER68 LTR ERV1 181 490 -72 1786 156 58 0 chr12 33502489 33502784 -110779705 + AluJb SINE Alu 1 312 0 2334 114 0 9 chr12 33503362 33503677 -110778812 + AluSx SINE Alu 1 312 0 645 263 151 64 chr12 33503971 33504009 -110778480 - MLT1H LTR MaLR 0 549 516 1761 125 18 14 chr12 33504009 33504329 -110778160 + AluSg SINE Alu 1 321 0 645 263 151 64 chr12 33504329 33504680 -110777809 - MLT1H LTR MaLR -33 516 125 2077 89 44 0 chr12 33504704 33504998 -110777491 + AluY SINE Alu 1 306 0 2271 90 7 0 chr12 33505013 33505302 -110777187 + AluSc SINE Alu 1 291 -18 911 295 50 45 chr12 33505448 33506066 -110776423 - HERV3 LTR ERV1 -1684 6072 5459 3550 76 13 2 chr12 33506066 33506514 -110775975 + MLT2A2 LTR ERVL 1 453 0 911 295 50 45 chr12 33506514 33506626 -110775863 - HERV3 LTR ERV1 -2297 5459 4624 970 91 8 8 chr12 33506634 33506766 -110775723 + AluSp SINE Alu 1 132 -181 2015 139 3 7 chr12 33506768 33507063 -110775426 + AluSx SINE Alu 1 294 -18 321 253 96 31 chr12 33507064 33507310 -110775179 - HERV3 LTR ERV1 -1728 5432 4733 916 259 44 45 chr12 33507479 33507915 -110774574 - HERV3 LTR ERV1 -2804 4952 4560 2070 105 10 7 chr12 33507917 33508211 -110774278 - AluSx SINE Alu -17 295 1 1337 292 68 56 chr12 33508211 33508388 -110774101 - HERV3 LTR ERV1 -1146 3808 3634 2173 131 0 6 chr12 33508388 33508700 -110773789 + AluSg SINE Alu 1 310 0 1337 292 68 56 chr12 33508700 33509628 -110772861 - HERV3 LTR ERV1 -1320 3634 2897 2264 128 0 0 chr12 33509702 33510008 -110772481 - AluSx SINE Alu -6 306 1 2178 128 0 0 chr12 33510013 33510319 -110772170 - AluSc SINE Alu -3 306 1 269 321 24 24 chr12 33510513 33510782 -110771707 - HERV3 LTR ERV1 -4901 3725 2640 2343 112 3 0 chr12 33511073 33511385 -110771104 - AluSp SINE Alu 0 313 1 607 298 25 47 chr12 33511394 33511713 -110770776 - HERV3 LTR ERV1 -4023 2653 2342 252 393 0 0 chr12 33511922 33512067 -110770422 - HERV3 LTR ERV1 -6487 1912 1768 517 328 30 26 chr12 33512303 33512605 -110769884 - HERV3 LTR ERV1 -4006 948 646 2450 182 83 122 chr12 33512690 33513532 -110768957 - HERV3 LTR ERV1 -7007 809 1 1441 144 87 27 chr12 33513532 33513812 -110768677 - MER51A LTR ERV1 0 634 372 2404 97 3 0 chr12 33513812 33514123 -110768366 - AluSp SINE Alu -1 312 1 1441 144 87 27 chr12 33514123 33514243 -110768246 - MER51A LTR ERV1 -262 372 1 780 182 8 0 chr12 33514290 33514422 -110768067 + FLAM_A SINE Alu 1 133 0 2132 114 0 0 chr12 33514923 33515224 -110767265 + AluSg SINE Alu 1 301 0 761 128 30 30 chr12 33515270 33515403 -110767086 + AluJb SINE Alu 2 134 -178 2392 98 0 0 chr12 33515533 33515830 -110766659 - AluSg SINE Alu -13 297 1 3820 77 18 18 chr12 33516108 33516777 -110765712 + MER11A LTR ERVK 1 737 -499 2306 69 5 161 chr12 33517417 33517852 -110764637 + MER11A LTR ERVK 900 1266 0 2043 118 31 0 chr12 33518378 33518666 -110763823 + AluSx SINE Alu 1 297 -15 1793 175 3 3 chr12 33518676 33518973 -110763516 + AluJb SINE Alu 6 302 -10 2180 134 57 119 chr12 33519045 33519641 -110762848 + LTR34 LTR ERV1 1 559 -140 2220 126 35 16 chr12 33519641 33520007 -110762482 - THE1C LTR MaLR 0 375 3 684 191 22 51 chr12 33520008 33520108 -110762381 + Charlie4 DNA MER1_type 1789 1883 -78 1985 121 62 3 chr12 33520108 33520398 -110762091 + AluSx SINE Alu 1 307 -5 684 191 22 51 chr12 33520398 33520475 -110762014 + Charlie4 DNA MER1_type 1883 1961 0 446 191 95 137 chr12 33520591 33520759 -110761730 - MLT1J LTR MaLR -314 197 37 2047 141 3 0 chr12 33520778 33521075 -110761414 + AluSx SINE Alu 1 298 -14 2255 93 0 3 chr12 33521255 33521546 -110760943 + AluSg1 SINE Alu 1 290 -19 478 304 33 16 chr12 33522195 33522379 -110760110 - MIR SINE MIR -29 233 47 1462 194 4 4 chr12 33522838 33523086 -110759403 + AluJb SINE Alu 1 248 -64 745 165 0 0 chr12 33523313 33523428 -110759061 + FLAM_C SINE Alu 1 115 -18 32 26 0 0 chr12 33523434 33523473 -110759016 + AT_rich Low_complexity Low_complexity 1 39 0 382 292 28 0 chr12 33523894 33524038 -110758451 + G-rich Low_complexity Low_complexity 6 153 0 1905 174 74 56 chr12 33524530 33524613 -110757876 - LTR10A LTR ERV1 0 548 468 2218 57 68 0 chr12 33524613 33524893 -110757596 - AluY SINE Alu -11 300 2 1905 174 74 56 chr12 33524893 33525293 -110757196 - LTR10A LTR ERV1 -80 468 1 225 0 0 0 chr12 33525338 33525363 -110757126 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1578 136 46 50 chr12 33525367 33525647 -110756842 - AluJb SINE Alu -30 282 4 1793 141 7 4 chr12 33525657 33525927 -110756562 - AluSx SINE Alu -7 305 35 1227 152 70 152 chr12 33525927 33526415 -110756074 + LTR7 LTR ERV1 3 450 0 282 122 0 0 chr12 33526415 33526456 -110756033 - AluSx SINE Alu -262 41 1 2454 47 3 20 chr12 33526480 33526779 -110755710 + AluY SINE Alu 1 294 -17 1288 176 43 81 chr12 33526997 33527393 -110755096 - LTR24B LTR ERV1 -1 523 188 636 237 40 12 chr12 33527576 33527749 -110754740 + MER5A DNA MER1_type 12 189 0 21 0 0 0 chr12 33528069 33528090 -110754399 + GC_rich Low_complexity Low_complexity 1 21 0 25 102 0 0 chr12 33528167 33528255 -110754234 + GC_rich Low_complexity Low_complexity 1 88 0 673 254 110 13 chr12 33529844 33530080 -110752409 + MIR SINE MIR 3 261 -1 1657 148 60 54 chr12 33530473 33530771 -110751718 + AluSx SINE Alu 1 300 -12 1691 119 123 11 chr12 33531348 33531609 -110750880 + AluSg SINE Alu 1 290 -20 1966 84 80 7 chr12 33531616 33531891 -110750598 + AluSc SINE Alu 1 295 -14 3013 197 115 21 chr12 33532097 33532661 -110749828 - L1MB8 LINE L1 -18 6160 5492 2552 116 36 27 chr12 33532661 33533110 -110749379 - L1PA13 LINE L1 -1 6162 5710 3013 197 115 21 chr12 33533110 33533369 -110749120 - L1MB8 LINE L1 -686 5492 5259 433 206 29 0 chr12 33533389 33533491 -110748998 - L1MB8 LINE L1 -1297 4849 4745 1932 132 40 3 chr12 33533493 33533789 -110748700 - AluSx SINE Alu -5 307 1 1324 138 69 55 chr12 33533789 33534127 -110748362 + MER51A LTR ERV1 119 628 -6 1692 98 0 0 chr12 33534228 33534443 -110748046 + AluSc SINE Alu 86 300 -9 1521 95 40 14 chr12 33534590 33534812 -110747677 + MER30 DNA MER1_type 3 230 0 235 330 104 17 chr12 33535560 33535675 -110746814 + REP3 LTR ERV 190 314 -248 358 192 55 0 chr12 33535952 33536025 -110746464 - Tigger5 DNA MER2_type 0 2323 2247 244 213 147 13 chr12 33536031 33536106 -110746383 - Tigger5 DNA MER2_type -2031 292 208 1061 188 56 33 chr12 33536227 33536440 -110746049 - Tigger5 DNA MER2_type -2105 218 1 242 220 55 64 chr12 33536806 33536915 -110745574 + L1MC5 LINE L1 7661 7768 -193 2601 50 0 0 chr12 33536978 33537280 -110745209 - AluY SINE Alu -9 302 1 1422 191 47 47 chr12 33537475 33537774 -110744715 - AluJo SINE Alu -13 299 1 1385 169 8 8 chr12 33537811 33538048 -110744441 + AluJb SINE Alu 58 294 -18 1244 169 201 8 chr12 33538174 33538423 -110744066 - AluJb SINE Alu -15 297 1 1118 194 122 45 chr12 33538949 33539075 -110743414 - L1M4 LINE L1 -3540 2606 2491 2221 178 110 35 chr12 33539075 33539558 -110742931 + LTR44 LTR ERV1 1 519 0 1118 194 122 45 chr12 33539558 33539681 -110742808 - L1M4 LINE L1 -3655 2491 2379 2082 130 7 3 chr12 33539681 33539974 -110742515 - AluSq SINE Alu -19 294 1 1118 194 122 45 chr12 33539974 33540124 -110742365 - L1M4 LINE L1 -3767 2379 2175 1146 184 24 14 chr12 33540127 33540334 -110742155 + MER21B LTR ERV1 1 209 -654 533 176 0 0 chr12 33540355 33540446 -110742043 - MSTC LTR MaLR 0 428 338 2724 190 56 37 chr12 33540457 33540857 -110741632 + MER21B LTR ERV1 222 638 -225 2586 63 0 0 chr12 33540857 33541158 -110741331 + AluY SINE Alu 1 301 -10 2724 190 56 37 chr12 33541158 33541330 -110741159 + MER21B LTR ERV1 638 805 -58 25 31 0 0 chr12 33541361 33541393 -110741096 + AT_rich Low_complexity Low_complexity 1 32 0 340 207 0 0 chr12 33541784 33541842 -110740647 + Tigger2a DNA MER2_type 1 58 -376 849 182 75 0 chr12 33541845 33542004 -110740485 - FAM SINE Alu -4 171 1 1553 195 155 20 chr12 33542339 33542806 -110739683 - MER21B LTR ERV1 -66 797 19 1292 186 128 37 chr12 33542884 33543241 -110739248 - MLT1B LTR MaLR 0 467 3 299 200 97 74 chr12 33543469 33543525 -110738964 - L1MC3 LINE L1 0 7785 7732 2208 96 31 3 chr12 33543525 33543817 -110738672 + AluSg SINE Alu 1 300 -10 299 200 97 74 chr12 33543817 33544023 -110738466 - L1MC3 LINE L1 -53 7732 6062 1027 273 150 35 chr12 33544039 33544744 -110737745 - L1ME3A LINE L1 -4 6166 5543 2175 152 20 68 chr12 33544744 33544991 -110737498 - Tigger2a DNA MER2_type -2275 433 216 1896 77 4 0 chr12 33544991 33545225 -110737264 + AluSg SINE Alu 55 289 -21 2175 152 20 68 chr12 33545225 33545432 -110737057 - Tigger2a DNA MER2_type -2492 216 1 1027 273 150 35 chr12 33545432 33545724 -110736765 - L1ME3A LINE L1 -627 5543 5286 2150 95 0 20 chr12 33545724 33546020 -110736469 - AluSq SINE Alu -23 290 1 1027 273 150 35 chr12 33546020 33546327 -110736162 - L1ME3A LINE L1 -884 5286 5015 1850 152 26 23 chr12 33546327 33546637 -110735852 - AluSx SINE Alu -1 311 1 1027 273 150 35 chr12 33546637 33546707 -110735782 - L1ME3A LINE L1 -1155 5015 4500 2098 91 0 75 chr12 33547070 33547401 -110735088 - AluSc SINE Alu -2 307 2 2492 74 0 0 chr12 33547455 33547753 -110734736 - AluY SINE Alu -13 298 1 1001 184 110 9 chr12 33547754 33547972 -110734517 - MER21B LTR ERV1 -52 811 572 1563 159 3 70 chr12 33548076 33548390 -110734099 - AluJb SINE Alu -19 293 1 507 253 34 27 chr12 33548408 33548554 -110733935 - MER21B LTR ERV1 -619 244 98 2204 131 3 3 chr12 33548632 33548944 -110733545 - AluSx SINE Alu 0 312 1 682 268 19 62 chr12 33556097 33556253 -110726236 - MER58A DNA MER1_type -2197 223 76 2080 124 3 0 chr12 33556253 33556568 -110725921 - AluSx SINE Alu 0 316 1 682 268 19 62 chr12 33556568 33556619 -110725870 - MER58A DNA MER1_type -2344 76 24 188 322 240 0 chr12 33556638 33556784 -110725705 - MIR SINE MIR -56 206 26 1346 170 90 66 chr12 33556802 33557137 -110725352 - MER2 DNA MER2_type -1 343 1 2054 117 7 17 chr12 33557232 33557523 -110724966 - AluSx SINE Alu -20 292 5 2361 90 0 3 chr12 33557645 33557946 -110724543 + AluY SINE Alu 1 300 -11 2135 127 0 0 chr12 33558100 33558391 -110724098 + AluSx SINE Alu 1 291 -21 221 30 61 0 chr12 33558958 33558991 -110723498 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1752 112 62 22 chr12 33558993 33559269 -110723220 - AluSx SINE Alu -25 287 1 1706 142 17 20 chr12 33559445 33559741 -110722748 + AluJo SINE Alu 1 295 -17 600 198 18 9 chr12 33560033 33560144 -110722345 + MER47A DNA MER2_type 1 112 -254 499 73 29 0 chr12 33560144 33560237 -110722252 - AluSx SINE Alu 0 307 213 973 143 21 0 chr12 33560238 33560378 -110722111 - AluSx SINE Alu -170 143 1 2308 70 0 17 chr12 33561722 33562022 -110720467 + AluY SINE Alu 7 301 -10 717 225 25 12 chr12 33562181 33562341 -110720148 - AluJ SINE Alu -20 292 131 202 50 50 50 chr12 33562405 33562445 -110720044 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2293 100 0 0 chr12 33562459 33562759 -110719730 - AluSx SINE Alu -12 300 1 2110 88 39 11 chr12 33562761 33563046 -110719443 - AluSg SINE Alu -17 293 1 771 180 0 0 chr12 33563074 33563196 -110719293 - AluJ SINE Alu -188 124 3 355 219 73 49 chr12 33563234 33563356 -110719133 + Charlie1 DNA MER1_type 2151 2275 -486 297 250 0 0 chr12 33563356 33563412 -110719077 - Tigger3b DNA MER2_type 0 1232 1177 2101 124 24 0 chr12 33563412 33563703 -110718786 - AluSx SINE Alu -14 298 1 470 118 29 0 chr12 33563766 33563834 -110718655 - AluS SINE Alu -242 71 2 24 32 0 0 chr12 33563871 33563902 -110718587 + AT_rich Low_complexity Low_complexity 1 31 0 805 186 28 7 chr12 33563952 33564097 -110718392 + AluJb SINE Alu 1 148 -164 536 178 37 9 chr12 33564233 33564340 -110718149 - FLAM_C SINE Alu -32 111 2 591 188 76 7 chr12 33564385 33564522 -110717967 - L1MA9 LINE L1 0 6312 6163 941 219 3 0 chr12 33564522 33564824 -110717665 - AluSp SINE Alu 0 303 1 24 32 0 0 chr12 33564940 33564971 -110717518 + GC_rich Low_complexity Low_complexity 1 31 0 50 75 0 0 chr12 33565011 33565117 -110717372 + GC_rich Low_complexity Low_complexity 1 106 0 34 24 0 0 chr12 33565134 33565175 -110717314 + GC_rich Low_complexity Low_complexity 1 41 0 2180 111 3 10 chr12 33565483 33565789 -110716700 + AluSx SINE Alu 1 304 -8 720 183 8 0 chr12 33565789 33565911 -110716578 - FLAM_C SINE Alu -185 127 2 723 214 0 0 chr12 33566377 33566494 -110715995 + G-rich Low_complexity Low_complexity 1 117 0 1103 200 49 4 chr12 33567077 33567108 -110715381 + MER46A DNA MER2_type 1 29 -2702 1985 137 3 7 chr12 33567108 33567407 -110715082 + AluSq SINE Alu 1 298 -15 1103 200 49 4 chr12 33567407 33567600 -110714889 + MER46A DNA MER2_type 29 235 -1 * 1649 144 57 57 chr12 33567600 33567772 -110714717 - Tigger3b DNA MER2_type -1897 1131 960 2017 134 0 0 chr12 33567772 33568056 -110714433 + AluSq SINE Alu 2 285 -28 1649 144 57 57 chr12 33568056 33568231 -110714258 - Tigger3b DNA MER2_type -2067 961 784 762 228 23 12 chr12 33568231 33568402 -110714087 - AluSg/x SINE Alu -11 301 129 2009 130 7 17 chr12 33568503 33568803 -110713686 - AluSx SINE Alu -15 297 1 808 155 7 35 chr12 33568850 33568992 -110713497 - AluJo SINE Alu -174 138 1 538 161 183 28 chr12 33568998 33569063 -110713426 - Tigger3b DNA MER2_type -2327 701 647 2184 111 7 0 chr12 33569063 33569352 -110713137 - AluSx SINE Alu -21 291 1 538 161 183 28 chr12 33569352 33569466 -110713023 - Tigger3b DNA MER2_type -2381 647 494 1181 186 20 5 chr12 33569469 33569673 -110712816 + AluJb SINE Alu 1 207 -105 1129 142 30 15 chr12 33569700 33569897 -110712592 - Tigger3b DNA MER2_type -686 545 346 1044 158 0 11 chr12 33569897 33570074 -110712415 - AluSg/x SINE Alu -9 303 129 397 131 87 57 chr12 33570086 33570121 -110712368 - Tigger3(Golem) DNA MER2_type -879 2149 2117 2179 108 11 3 chr12 33570121 33570407 -110712082 + AluSc SINE Alu 1 288 -21 397 131 87 57 chr12 33570407 33570513 -110711976 - Tigger3(Golem) DNA MER2_type -911 2117 209 249 214 143 0 chr12 33570564 33570586 -110711903 + Charlie1 DNA MER1_type 2547 2564 -197 1681 120 102 33 chr12 33570586 33570724 -110711765 + AluSx SINE Alu 1 128 -184 1879 82 124 4 chr12 33570724 33570991 -110711498 + AluSg1 SINE Alu 5 303 -6 1681 120 102 33 chr12 33570991 33571127 -110711362 + AluSx SINE Alu 128 294 -18 249 214 143 0 chr12 33571127 33571216 -110711273 + Charlie1 DNA MER1_type 2564 2674 -87 1397 186 31 38 chr12 33571257 33571548 -110710941 - AluJb SINE Alu -23 289 1 394 257 71 18 chr12 33571562 33571675 -110710814 - MLT1E LTR MaLR -433 160 42 1036 125 0 7 chr12 33571700 33571844 -110710645 + AluSq/x SINE Alu 1 143 -169 2120 85 27 30 chr12 33571846 33572141 -110710348 + AluY SINE Alu 1 294 -17 22 0 0 0 chr12 33572387 33572409 -110710080 + AT_rich Low_complexity Low_complexity 1 22 0 1604 185 40 3 chr12 33572418 33572716 -110709773 - AluJo SINE Alu -3 309 1 806 263 138 80 chr12 33572719 33573088 -110709401 + ERVL LTR ERVL 2687 3092 -2672 2369 71 0 7 chr12 33573088 33573385 -110709104 - AluY SINE Alu -16 295 1 806 263 138 80 chr12 33573385 33573502 -110708987 + ERVL LTR ERVL 3092 3201 -2563 572 289 87 73 chr12 33573607 33573751 -110708738 + ERVL LTR ERVL 3410 3551 -2213 2471 62 0 3 chr12 33573751 33574055 -110708434 + AluY SINE Alu 1 303 -8 572 289 87 73 chr12 33574055 33574280 -110708209 + ERVL LTR ERVL 3551 3784 -1980 476 194 10 20 chr12 33574338 33574436 -110708053 + FLAM_A SINE Alu 26 122 -20 843 312 110 15 chr12 33574646 33575334 -110707155 + ERVL LTR ERVL 4054 4822 -942 1809 166 16 7 chr12 33575334 33575642 -110706847 - AluJb SINE Alu -1 311 1 1835 148 41 29 chr12 33575666 33576010 -110706479 - L1MB7 LINE L1 -22 6162 5815 2304 104 7 0 chr12 33576010 33576318 -110706171 + AluSx SINE Alu 1 310 -2 2620 62 0 3 chr12 33576477 33576783 -110705706 + AluSq SINE Alu 1 305 -8 327 49 0 0 chr12 33576783 33576824 -110705665 + (TA)n Simple_repeat Simple_repeat 2 42 0 359 226 0 43 chr12 33576827 33576920 -110705569 + L1MC4 LINE L1 6615 6703 -1339 1044 151 0 0 chr12 33576929 33577108 -110705381 + (TA)n Simple_repeat Simple_repeat 1 179 0 1199 87 12 0 chr12 33577108 33577269 -110705220 + AluSq SINE Alu 135 297 -16 631 273 98 76 chr12 33577791 33577844 -110704645 + L2 LINE L2 2862 2912 -401 2155 110 10 3 chr12 33577844 33578143 -110704346 - AluSx SINE Alu -11 301 1 631 273 98 76 chr12 33578143 33578433 -110704056 + L2 LINE L2 2912 3217 -96 2292 54 4 4 chr12 33578433 33578741 -110703748 - AluY SINE Alu 0 308 1 631 273 98 76 chr12 33578741 33578762 -110703727 + L2 LINE L2 3217 3236 -77 2011 144 0 0 chr12 33579231 33579515 -110702974 + AluSx SINE Alu 1 284 -28 502 209 0 0 chr12 33579633 33579738 -110702751 + AluSg/x SINE Alu 208 312 0 260 285 69 28 chr12 33579968 33580112 -110702377 + MIR SINE MIR 73 222 -40 228 67 0 0 chr12 33580476 33580506 -110701983 + (TG)n Simple_repeat Simple_repeat 1 30 0 481 56 70 0 chr12 33581227 33581298 -110701191 - AluY SINE Alu -22 289 214 296 233 120 38 chr12 33581299 33581432 -110701057 - L1ME4a LINE L1 -177 5944 5801 1421 194 54 4 chr12 33581513 33581791 -110700698 + AluJb SINE Alu 1 292 -20 2525 81 67 20 chr12 33582039 33582397 -110700092 - THE1C LTR MaLR 0 375 1 463 265 30 8 chr12 33582867 33582999 -110699490 + MIR SINE MIR 110 244 -18 2215 60 32 3 chr12 33583231 33583515 -110698974 + AluY SINE Alu 1 292 -19 2007 156 3 13 chr12 33584312 33584655 -110697834 - AluJb SINE Alu 0 312 1 21 0 0 0 chr12 33584660 33584681 -110697808 + AT_rich Low_complexity Low_complexity 1 21 0 1913 161 3 3 chr12 33584964 33585255 -110697234 + AluJb SINE Alu 1 291 -21 396 0 0 0 chr12 33585282 33585326 -110697163 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 365 267 12 0 chr12 33585382 33585468 -110697021 - MIR SINE MIR -105 157 71 413 262 129 6 chr12 33585599 33585754 -110696735 + MIR SINE MIR 20 192 -63 231 330 0 10 chr12 33585902 33586002 -110696487 - MIR SINE MIR -1 261 163 2121 126 3 0 chr12 33587392 33587686 -110694803 - AluSq SINE Alu -18 295 1 453 141 0 0 chr12 33587984 33588048 -110694441 + AluS SINE Alu 3 66 -246 1662 158 14 4 chr12 33588624 33588924 -110693565 + AluJo SINE Alu 1 303 0 2218 116 3 0 chr12 33588977 33589271 -110693218 + AluSg SINE Alu 1 295 -15 2178 121 3 0 chr12 33589271 33589569 -110692920 + AluSx SINE Alu 1 299 -13 2431 88 0 0 chr12 33589759 33590055 -110692434 + AluSx SINE Alu 1 296 -16 2467 80 0 6 chr12 33590060 33590372 -110692117 + AluY SINE Alu 2 311 0 281 230 274 0 chr12 33590379 33590492 -110691997 + MIR SINE MIR 37 180 -82 240 336 53 75 chr12 33590586 33590765 -110691724 - L2 LINE L2 -252 3061 2880 1923 144 3 22 chr12 33590765 33591077 -110691412 + AluJo SINE Alu 2 307 -5 240 336 53 75 chr12 33591077 33591272 -110691217 - L2 LINE L2 -433 2880 2698 852 134 0 16 chr12 33591277 33591404 -110691085 + AluJb SINE Alu 1 125 -187 22 0 0 0 chr12 33591404 33591426 -110691063 + AT_rich Low_complexity Low_complexity 1 22 0 1002 299 89 74 chr12 33591459 33591782 -110690707 - L2 LINE L2 -660 2654 2337 2333 104 0 0 chr12 33591782 33592081 -110690408 - AluSx SINE Alu -13 299 1 1002 299 89 74 chr12 33592081 33592579 -110689910 - L2 LINE L2 -977 2337 1821 2201 118 0 0 chr12 33592592 33592879 -110689610 + AluSx SINE Alu 2 288 -24 8358 55 1 0 chr12 33593174 33594139 -110688350 - LTR5 LTR ERVK -3 966 1 3523 190 24 30 chr12 33594139 33594355 -110688134 - L1MB8 LINE L1 -152 6026 5810 1456 71 0 22 chr12 33594355 33594539 -110687950 - AluSp SINE Alu -3 310 131 279 0 0 0 chr12 33594539 33594570 -110687919 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2260 62 0 27 chr12 33594570 33594862 -110687627 - AluY SINE Alu -27 284 1 3523 190 24 30 chr12 33594862 33595487 -110687002 - L1MB8 LINE L1 -365 5813 5191 960 120 27 7 chr12 33595500 33595650 -110686839 + AluSx SINE Alu 1 153 -159 2294 112 3 3 chr12 33595752 33596064 -110686425 + AluSp SINE Alu 1 312 -1 1153 195 106 33 chr12 33596176 33596305 -110686184 + MER33 DNA MER1_type 1 119 -2466 285 98 0 0 chr12 33596305 33596346 -110686143 + (TG)n Simple_repeat Simple_repeat 2 42 0 * 981 88 0 0 chr12 33596345 33596482 -110686007 + (TA)n Simple_repeat Simple_repeat 2 138 0 1153 195 106 33 chr12 33596346 33596482 -110686007 + MER33 DNA MER1_type 119 244 -2341 1721 153 18 4 chr12 33596482 33596757 -110685732 - AluJb SINE Alu -23 289 11 1153 195 106 33 chr12 33596757 33596836 -110685653 + MER33 DNA MER1_type 244 242 -2343 2085 143 3 0 chr12 33596836 33597137 -110685352 - AluJb SINE Alu -10 302 1 1153 195 106 33 chr12 33597137 33597228 -110685261 + MER33 DNA MER1_type 241 324 0 237 234 0 16 chr12 33597464 33597528 -110684961 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 1721 152 47 4 chr12 33597703 33597979 -110684510 - AluJo SINE Alu -3 309 22 261 250 15 0 chr12 33598937 33599005 -110683484 + L2 LINE L2 3196 3264 -8 231 289 0 26 chr12 33599314 33599390 -110683099 + GA-rich Low_complexity Low_complexity 4 77 0 351 154 0 0 chr12 33599630 33599695 -110682794 + GA-rich Low_complexity Low_complexity 2 66 0 2351 93 10 0 chr12 33600454 33600756 -110681733 + AluY SINE Alu 1 305 -6 349 297 10 0 chr12 33600760 33600861 -110681628 - L1MC4 LINE L1 -1327 6715 6614 321 311 0 0 chr12 33600783 33600873 -110681616 + L1MC4 LINE L1 6614 6703 -1339 * 1841 143 42 0 chr12 33601525 33601811 -110680678 - AluJb SINE Alu -14 298 1 737 232 33 87 chr12 33602925 33603201 -110679288 - MER102b DNA MER1_type -4 337 77 183 129 0 0 chr12 33603397 33603428 -110679061 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 26 0 0 0 chr12 33605703 33605729 -110676760 + AT_rich Low_complexity Low_complexity 1 26 0 2214 109 0 10 chr12 33605739 33606043 -110676446 - AluSx SINE Alu -11 301 1 870 158 0 0 chr12 33606048 33606175 -110676314 - FLAM_C SINE Alu -16 127 1 22 0 0 0 chr12 33606868 33606890 -110675599 + AT_rich Low_complexity Low_complexity 1 22 0 466 100 0 0 chr12 33606890 33606950 -110675539 - Alu SINE Alu -25 285 226 1936 139 7 16 chr12 33607121 33607424 -110675065 + AluJb SINE Alu 1 300 -12 2406 71 0 0 chr12 33607555 33607850 -110674639 + AluY SINE Alu 1 295 -16 350 363 71 42 chr12 33610150 33610530 -110671959 + L2 LINE L2 2872 3262 -10 2603 76 16 16 chr12 33610614 33610981 -110671508 - L1PA12 LINE L1 -2 6166 5800 1853 113 116 15 chr12 33611246 33611574 -110670915 + MER46B DNA MER2_type 1 236 0 2266 92 3 3 chr12 33611856 33612150 -110670339 - AluSp SINE Alu -17 296 3 32 0 0 0 chr12 33612395 33612427 -110670062 + AT_rich Low_complexity Low_complexity 1 32 0 2393 42 0 0 chr12 33612427 33612713 -110669776 - L1PA5 LINE L1 -9 6145 5860 2124 113 28 0 chr12 33613608 33613899 -110668590 + AluSx SINE Alu 1 299 -13 1664 190 10 3 chr12 33616107 33616402 -110666087 - AluJb SINE Alu -15 297 1 2321 70 6 29 chr12 33616899 33617212 -110665277 - AluY SINE Alu -5 306 1 28 29 0 0 chr12 33617285 33617320 -110665169 + AT_rich Low_complexity Low_complexity 1 35 0 2584 194 71 62 chr12 33617454 33617867 -110664622 + Tigger6a DNA MER2_type 3 411 -1186 635 170 107 9 chr12 33617867 33617979 -110664510 + FLAM_A SINE Alu 1 123 -10 2584 194 71 62 chr12 33617979 33618127 -110664362 + Tigger6a DNA MER2_type 411 573 -1024 2273 87 0 32 chr12 33618127 33618438 -110664051 + AluSg SINE Alu 1 301 -9 2584 194 71 62 chr12 33618438 33618551 -110663938 + Tigger6a DNA MER2_type 573 684 -399 2340 93 6 6 chr12 33618857 33619168 -110663321 + AluSq SINE Alu 1 311 -2 385 290 122 0 chr12 33619534 33619665 -110662824 + MER5A DNA MER1_type 13 159 -30 256 329 114 19 chr12 33620342 33620500 -110661989 - MER20 DNA MER1_type -45 174 2 360 313 60 8 chr12 33620512 33620646 -110661843 + MIR SINE MIR 121 261 -1 26 50 0 0 chr12 33620690 33620730 -110661759 + AT_rich Low_complexity Low_complexity 1 40 0 921 187 39 124 chr12 33621472 33621803 -110660686 - MER46C DNA MER2_type -16 322 20 1281 28 0 0 chr12 33621904 33622048 -110660441 - L1PA5 LINE L1 0 6154 6011 659 62 73 0 chr12 33622269 33622365 -110660124 + L1MA8 LINE L1 6048 6150 -141 638 147 101 0 chr12 33622854 33622983 -110659506 + L1MA8 LINE L1 6148 6289 -2 6046 48 39 17 chr12 33623145 33623340 -110659149 - MER4E LTR ERV1 0 766 577 2426 79 3 10 chr12 33623340 33623644 -110658845 + AluSc SINE Alu 1 302 -7 6046 48 39 17 chr12 33623644 33624198 -110658291 - MER4E LTR ERV1 -189 577 1 506 312 7 0 chr12 33624349 33624487 -110658002 - MER91B DNA MER1_type -51 139 1 487 283 0 26 chr12 33625463 33625615 -110656874 - MIR SINE MIR -45 217 70 1847 150 6 26 chr12 33625818 33626131 -110656358 + AluJb SINE Alu 1 307 -5 6579 179 60 46 chr12 33626131 33626886 -110655603 - L1MB8 LINE L1 -259 5919 5176 1210 126 0 60 chr12 33626886 33627069 -110655420 - FAM SINE Alu -3 172 1 6579 179 60 46 chr12 33627069 33627791 -110654698 - L1MB8 LINE L1 -1002 5176 4465 2208 129 8 64 chr12 33627791 33627978 -110654511 + MER47A DNA MER2_type 1 197 -2126 2374 103 0 0 chr12 33627978 33628278 -110654211 + AluSx SINE Alu 1 300 -12 2208 129 8 64 chr12 33628278 33628406 -110654083 + MER47A DNA MER2_type 197 293 -2030 2211 110 0 31 chr12 33628406 33628725 -110653764 - AluSx SINE Alu -3 309 1 2208 129 8 64 chr12 33628725 33628796 -110653693 + MER47A DNA MER2_type 293 366 0 6579 179 60 46 chr12 33628796 33628825 -110653664 - L1MB8 LINE L1 -1713 4465 4438 9627 25 4 4 chr12 33628825 33630685 -110651804 - L1PA4 LINE L1 0 6155 4301 6579 179 60 46 chr12 33630685 33630698 -110651791 - L1MB8 LINE L1 -1740 4438 4427 2352 83 3 0 chr12 33630698 33630988 -110651501 + AluSp SINE Alu 2 292 -21 6579 179 60 46 chr12 33630988 33631693 -110650796 - L1MB8 LINE L1 -1751 4427 3670 1916 124 18 0 chr12 33631693 33631968 -110650521 - AluSx SINE Alu -1 311 32 6579 179 60 46 chr12 33631968 33632041 -110650448 - L1MB8 LINE L1 -2508 3670 3599 681 205 0 0 chr12 33632349 33632466 -110650023 + FLAM_C SINE Alu 2 118 -25 2434 87 3 0 chr12 33632484 33632793 -110649696 + AluSx SINE Alu 1 310 -2 2312 103 0 0 chr12 33633168 33633470 -110649019 + AluSx SINE Alu 1 302 -10 2342 90 0 0 chr12 33633841 33634155 -110648334 + AluSx SINE Alu 1 314 0 243 158 26 13 chr12 33634305 33634381 -110648108 + (TA)n Simple_repeat Simple_repeat 1 77 0 1911 148 105 0 chr12 33634452 33634757 -110647732 - MER1B DNA MER1_type 0 337 1 295 311 169 11 chr12 33635515 33635692 -110646797 - MIR SINE MIR -57 205 1 3030 161 55 43 chr12 33635869 33636173 -110646316 - Tigger6 DNA MER2_type 0 1597 1298 2218 67 9 86 chr12 33636173 33636500 -110645989 + AluSg SINE Alu 1 302 -8 3030 161 55 43 chr12 33636500 33636691 -110645798 - Tigger6 DNA MER2_type -299 1298 1090 2281 92 0 31 chr12 33636691 33637008 -110645481 - AluSg SINE Alu -3 307 1 3030 161 55 43 chr12 33637008 33637145 -110645344 - Tigger6 DNA MER2_type -507 1090 956 502 196 107 18 chr12 33637156 33637268 -110645221 - FLAM_A SINE Alu -10 123 2 916 209 9 57 chr12 33637374 33637604 -110644885 - AluJo SINE Alu -46 266 48 687 80 0 0 chr12 33637604 33637692 -110644797 + Alu SINE Alu 220 307 -2 1037 93 7 0 chr12 33637692 33637831 -110644658 + AluYb8 SINE Alu 1 140 -178 613 250 8 4 chr12 33637839 33638005 -110644484 + L1MD2 LINE L1 6194 7807 -1 520 217 121 18 chr12 33638041 33638075 -110644414 - MER3 DNA MER1_type -21 188 159 2117 131 7 0 chr12 33638075 33638372 -110644117 + AluSg SINE Alu 1 299 -11 520 217 121 18 chr12 33638372 33638503 -110643986 - MER3 DNA MER1_type -50 159 6 2331 75 3 3 chr12 33638805 33639098 -110643391 - AluSc SINE Alu -16 293 1 469 132 0 66 chr12 33639098 33639189 -110643300 - Tigger1 DNA MER2_type -264 2154 2070 992 174 10 36 chr12 33639190 33639385 -110643104 + Tigger2 DNA MER2_type 2529 2718 0 234 311 97 10 chr12 33639532 33639635 -110642854 - MIR SINE MIR -65 143 32 423 326 119 13 chr12 33639656 33639883 -110642606 + MIR SINE MIR 2 252 -10 1853 146 0 0 chr12 33640032 33640337 -110642152 + AluSx SINE Alu 1 305 0 2004 133 0 3 chr12 33640890 33641183 -110641306 - AluSx SINE Alu -20 292 1 2248 97 0 22 chr12 33641184 33641495 -110640994 - AluSx SINE Alu -8 304 1 495 110 0 0 chr12 33642336 33642409 -110640080 - Alu SINE Alu -5 305 233 194 241 74 0 chr12 33644226 33644280 -110638209 + MIR3 SINE MIR 113 170 -38 2012 116 0 0 chr12 33644652 33644919 -110637570 + AluSx SINE Alu 1 267 -45 186 143 0 0 chr12 33645997 33646032 -110636457 + (CA)n Simple_repeat Simple_repeat 2 36 0 1649 130 20 16 chr12 33646069 33646316 -110636173 + AluSx SINE Alu 1 248 -64 2210 104 0 0 chr12 33646505 33646804 -110635685 + AluSg SINE Alu 1 299 -11 318 328 98 7 chr12 33647613 33647786 -110634703 + MIR SINE MIR 17 207 -55 323 230 16 8 chr12 33647934 33648002 -110634487 - Charlie7 DNA MER1_type -72 2540 2469 1696 148 40 10 chr12 33648002 33648300 -110634189 - AluJo SINE Alu -5 307 1 323 230 16 8 chr12 33648300 33648357 -110634132 - Charlie7 DNA MER1_type -143 2469 2414 450 266 39 0 chr12 33648358 33648486 -110634003 - Charlie7 DNA MER1_type -1915 697 565 1580 172 13 41 chr12 33648524 33648838 -110633651 + AluJo SINE Alu 1 305 -7 202 238 16 0 chr12 33648859 33648922 -110633567 + T-rich Low_complexity Low_complexity 4 67 0 1232 285 6 128 chr12 33649037 33649381 -110633108 + AluSx SINE Alu 1 302 0 235 211 35 18 chr12 33649636 33649693 -110632796 + MIR SINE MIR 89 146 -62 224 269 77 0 chr12 33649826 33649878 -110632611 + MIR SINE MIR 66 121 -87 22 35 0 0 chr12 33650067 33650096 -110632393 + AT_rich Low_complexity Low_complexity 1 29 0 1739 154 16 41 chr12 33650100 33650418 -110632071 + AluJb SINE Alu 3 312 0 31 0 0 0 chr12 33650631 33650662 -110631827 + AT_rich Low_complexity Low_complexity 1 31 0 181 213 43 21 chr12 33650716 33650763 -110631726 + L3 LINE CR1 1527 1574 -3 23 0 0 0 chr12 33653247 33653270 -110629219 + AT_rich Low_complexity Low_complexity 1 23 0 280 255 118 39 chr12 33654703 33654856 -110627633 - L2 LINE L2 0 3313 3149 199 275 19 24 chr12 33654920 33655029 -110627460 + MIR SINE MIR 91 145 -63 2005 149 0 7 chr12 33655038 33655333 -110627156 + AluSx SINE Alu 1 293 -19 434 39 52 0 chr12 33655333 33655410 -110627079 + (TA)n Simple_repeat Simple_repeat 1 81 0 2317 87 3 0 chr12 33655654 33655942 -110626547 - AluSx SINE Alu -23 289 1 307 263 39 101 chr12 33656013 33656089 -110626400 - L1MC4a LINE L1 -1906 5902 5823 2289 110 0 7 chr12 33656089 33656397 -110626092 - AluSx SINE Alu -6 306 1 307 263 39 101 chr12 33656397 33656465 -110626024 - L1MC4a LINE L1 -1985 5823 5768 2367 107 3 0 chr12 33656465 33656775 -110625714 - AluSp SINE Alu -2 311 1 307 263 39 101 chr12 33656775 33656808 -110625681 - L1MC4a LINE L1 -2040 5768 5735 21 36 0 0 chr12 33656808 33656836 -110625653 + AT_rich Low_complexity Low_complexity 1 28 0 223 275 62 0 chr12 33656919 33656999 -110625490 - MIR SINE MIR -26 236 152 2057 123 33 0 chr12 33657268 33657570 -110624919 - AluSx SINE Alu 0 312 1 1523 146 6 122 chr12 33657855 33658222 -110624267 + MLT2B3 LTR ERVL 219 552 -2 429 239 185 0 chr12 33658378 33658508 -110623981 - MLT1H1 LTR MaLR 0 555 402 344 269 47 36 chr12 33658563 33658776 -110623713 - MLT1H LTR MaLR -300 249 20 4433 130 20 124 chr12 33658926 33660469 -110622020 + pTR5 LTR ERV1 743 2606 0 2393 73 0 3 chr12 33660623 33660923 -110621566 + AluY SINE Alu 1 299 -12 2782 180 51 25 chr12 33660928 33661445 -110621044 + L1MB8 LINE L1 5503 6040 -138 1898 138 21 7 chr12 33661445 33661736 -110620753 + AluJb SINE Alu 1 295 -17 2782 180 51 25 chr12 33661736 33661823 -110620666 + L1MB8 LINE L1 6040 6123 -55 339 326 14 48 chr12 33662057 33662204 -110620285 - MLT1-int LTR MaLR -500 871 730 679 239 85 23 chr12 33662343 33662519 -110619970 + MER5A DNA MER1_type 3 189 0 438 319 0 7 chr12 33662761 33662905 -110619584 - MLT1-int LTR MaLR -830 541 399 942 289 128 56 chr12 33663091 33663428 -110619061 - MLT1G1 LTR MaLR 0 595 211 475 237 136 17 chr12 33663428 33663546 -110618943 + FLAM_A SINE Alu 1 132 -1 942 289 128 56 chr12 33663546 33663693 -110618796 - MLT1G1 LTR MaLR -384 211 76 2195 112 7 0 chr12 33663824 33664118 -110618371 + AluSq SINE Alu 1 296 -17 556 115 195 0 chr12 33664202 33664289 -110618200 - U6 snRNA snRNA -3 104 1 1768 163 0 17 chr12 33665089 33665383 -110617106 - AluSx SINE Alu -23 289 1 562 187 0 0 chr12 33666182 33666273 -110616216 - FLAM SINE Alu -13 130 40 1837 146 3 14 chr12 33666482 33666769 -110615720 - AluJb SINE Alu -24 288 5 621 59 0 0 chr12 33667611 33667696 -110614793 - AluSq SINE Alu 0 313 229 1098 96 0 25 chr12 33667697 33667854 -110614635 - AluSq SINE Alu -160 153 1 1533 215 60 57 chr12 33668582 33669019 -110613470 + L1MC4a LINE L1 6441 6878 -930 2442 211 69 34 chr12 33669081 33669104 -110613385 + L1MC4 LINE L1 7240 7261 -781 1599 193 0 35 chr12 33669104 33669245 -110613244 + AluJb SINE Alu 1 145 -167 2238 99 0 0 chr12 33669245 33669570 -110612919 + AluSg SINE Alu 1 325 0 1599 193 0 35 chr12 33669570 33669738 -110612751 + AluJb SINE Alu 145 300 -12 2442 211 69 34 chr12 33669738 33670363 -110612126 + L1MC4 LINE L1 7261 7911 -131 2218 105 3 7 chr12 33670797 33671101 -110611388 - AluSq SINE Alu -10 303 1 402 224 59 0 chr12 33671587 33671672 -110610817 - L2 LINE L2 -5 3267 3178 524 220 115 140 chr12 33672757 33673067 -110609422 + MER39 LTR ERV1 1 491 -216 339 167 0 197 chr12 33673043 33673175 -110609314 - MLT1A1 LTR MaLR -259 106 1 * 1571 164 52 11 chr12 33673304 33673591 -110608898 - AluJb SINE Alu -13 299 1 25 31 0 0 chr12 33674155 33674187 -110608302 + AT_rich Low_complexity Low_complexity 1 32 0 2399 103 0 0 chr12 33674771 33675081 -110607408 + AluSq SINE Alu 1 310 -3 2059 146 7 0 chr12 33675153 33675462 -110607027 + AluJb SINE Alu 1 311 -1 334 190 0 0 chr12 33675469 33675527 -110606962 + L1MB8 LINE L1 6115 6172 -6 1131 121 56 108 chr12 33675709 33675940 -110606549 + AluJo SINE Alu 86 304 -8 1031 184 0 6 chr12 33675959 33676122 -110606367 + FRAM SINE Alu 1 162 -4 459 141 167 0 chr12 33676134 33676212 -110606277 - FLAM_A SINE Alu -32 110 20 1259 115 92 4 chr12 33676292 33676618 -110605871 + L1MA8 LINE L1 5139 5488 -743 2066 115 24 3 chr12 33676619 33676914 -110605575 + AluSx SINE Alu 3 303 -9 14517 162 51 24 chr12 33676925 33677123 -110605366 + L1M1 LINE L1 13 204 -7361 2373 97 0 0 chr12 33677123 33677431 -110605058 + AluY SINE Alu 1 308 -3 14517 162 51 24 chr12 33677431 33679872 -110602617 + L1M1 LINE L1 204 2724 -4841 3458 158 78 36 chr12 33679857 33680565 -110601924 + L1MA8 LINE L1 5505 6249 -42 * 2243 60 14 11 chr12 33680565 33680887 -110601602 + AluY SINE Alu 1 323 0 3458 158 78 36 chr12 33680887 33680932 -110601557 + L1MA8 LINE L1 6249 6291 0 2002 142 3 0 chr12 33681285 33681574 -110600915 + AluSx SINE Alu 1 290 -22 2080 133 30 0 chr12 33682339 33682640 -110599849 - AluSx SINE Alu -2 310 1 324 0 0 0 chr12 33683957 33683993 -110598496 + (CA)n Simple_repeat Simple_repeat 2 37 0 400 321 147 9 chr12 33683999 33684217 -110598272 - MIR SINE MIR 0 262 15 2152 92 36 13 chr12 33684245 33684549 -110597940 + AluSp SINE Alu 1 311 -2 2414 76 0 0 chr12 33685337 33685625 -110596864 + AluSc SINE Alu 1 288 -21 231 36 0 0 chr12 33685629 33685657 -110596832 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 2216 82 41 0 chr12 33685854 33686145 -110596344 + AluSx SINE Alu 1 303 -9 1457 162 34 0 chr12 33686202 33686437 -110596052 + AluSx SINE Alu 1 243 -69 1056 159 6 0 chr12 33686593 33686756 -110595733 - AluSg/x SINE Alu -12 298 135 2287 124 0 0 chr12 33688048 33688355 -110594134 - AluSx SINE Alu -5 307 1 1005 59 47 59 chr12 33688463 33688632 -110593857 + MER41B LTR ERV1 131 297 -338 32125 92 14 10 chr12 33688632 33694306 -110588183 + L1PA7 LINE L1 740 6469 0 1058 153 5 6 chr12 33694306 33694488 -110588001 + L1MA8 LINE L1 5812 6001 -173 1312 158 14 18 chr12 33694508 33694729 -110587760 + MER41B LTR ERV1 279 498 -137 2166 76 4 0 chr12 33694867 33695143 -110587346 + AluSg SINE Alu 5 281 -29 2287 114 0 10 chr12 33695301 33695609 -110586880 + AluSx SINE Alu 1 305 -7 286 240 0 40 chr12 33695634 33695709 -110586780 - MER5A DNA MER1_type -87 102 31 323 253 61 121 chr12 33695709 33695829 -110586660 + MER5A DNA MER1_type 4 130 -59 2473 77 0 6 chr12 33695829 33696140 -110586349 - AluSg1 SINE Alu 0 309 1 323 253 61 121 chr12 33696140 33696151 -110586338 + MER5A DNA MER1_type 130 140 -49 2477 86 0 0 chr12 33696151 33696453 -110586036 - AluSq SINE Alu -11 302 1 323 253 61 121 chr12 33696453 33696518 -110585971 + MER5A DNA MER1_type 140 189 0 1533 166 4 16 chr12 33697000 33697193 -110585296 - AluSx SINE Alu 0 327 137 2221 103 7 0 chr12 33697193 33697493 -110584996 - AluSp SINE Alu -11 302 1 1533 166 4 16 chr12 33697493 33697587 -110584902 - AluSx SINE Alu -190 137 43 2265 117 7 0 chr12 33698303 33698611 -110583878 - AluSq SINE Alu -3 310 1 742 209 0 36 chr12 33698910 33699049 -110583440 + FLAM_C SINE Alu 3 136 -7 2207 82 7 10 chr12 33699070 33699363 -110583126 + AluY SINE Alu 1 292 -19 1388 168 16 12 chr12 33699464 33699708 -110582781 - AluJb SINE Alu -67 245 1 2080 106 14 17 chr12 33699814 33700106 -110582383 - AluSx SINE Alu -20 292 2 297 309 71 0 chr12 33700328 33700412 -110582077 + MIR SINE MIR 56 145 -63 2233 126 0 0 chr12 33700417 33700726 -110581763 + AluSx SINE Alu 1 309 -3 198 291 118 9 chr12 33700764 33700874 -110581615 + MIR SINE MIR 137 258 -4 463 193 12 0 chr12 33701347 33701430 -110581059 + FLAM_A SINE Alu 46 129 -13 382 346 7 15 chr12 33701586 33701722 -110580767 - MIR SINE MIR -107 155 21 200 309 0 0 chr12 33701731 33701786 -110580703 - L2 LINE L2 -12 3260 3206 2162 97 45 0 chr12 33701929 33702219 -110580270 - AluSc SINE Alu -6 303 1 1673 153 25 68 chr12 33702370 33702696 -110579793 - AluJo SINE Alu 0 312 1 225 94 0 0 chr12 33703360 33703392 -110579097 + (TCTA)n Simple_repeat Simple_repeat 1 32 0 885 193 6 58 chr12 33703392 33703563 -110578926 - AluJo SINE Alu -30 282 121 2192 118 0 7 chr12 33703588 33703893 -110578596 - AluSx SINE Alu -9 303 1 755 149 57 28 chr12 33703925 33704066 -110578423 - FRAM SINE Alu -6 170 26 602 147 0 0 chr12 33704069 33704171 -110578318 - L1MA5A LINE L1 -2 6295 6194 2172 82 3 82 chr12 33705639 33705967 -110576522 - AluSq SINE Alu -11 302 1 2253 113 0 6 chr12 33707040 33707351 -110575138 - AluSq SINE Alu -4 309 1 1558 171 47 0 chr12 33707362 33707636 -110574853 - AluJo SINE Alu -25 287 1 305 357 0 10 chr12 33708118 33708216 -110574273 - L2 LINE L2 -7 3265 3169 351 65 0 0 chr12 33708259 33708305 -110574184 + (ATGGTG)n Simple_repeat Simple_repeat 6 51 0 344 287 195 5 chr12 33708311 33708506 -110573983 - MIR SINE MIR -8 254 23 204 246 33 0 chr12 33708584 33708645 -110573844 + (CTAAA)n Simple_repeat Simple_repeat 4 66 0 218 314 29 14 chr12 33708647 33708717 -110573772 - L2 LINE L2 -203 3069 2999 592 227 50 8 chr12 33708904 33709023 -110573466 - FLAM_A SINE Alu -9 124 1 516 221 71 0 chr12 33709245 33709358 -110573131 - FLAM_A SINE Alu -10 132 12 337 280 23 0 chr12 33709515 33709627 -110572862 - MIR SINE MIR -87 121 5 2434 86 0 0 chr12 33709916 33710217 -110572272 - AluSq SINE Alu -12 301 1 899 314 173 47 chr12 33710651 33710718 -110571771 - L3 LINE CR1 -327 1250 1193 1995 158 10 0 chr12 33710718 33711021 -110571468 - AluSx SINE Alu -6 306 1 899 314 173 47 chr12 33711021 33711891 -110570598 - L3 LINE CR1 -384 1193 195 2378 66 24 0 chr12 33712102 33712391 -110570098 - AluY SINE Alu -15 296 1 2904 101 53 22 chr12 33712614 33713029 -110569460 + MSTC LTR MaLR 1 428 0 1753 131 70 24 chr12 33713806 33714104 -110568385 - AluSx SINE Alu 0 312 1 348 355 19 13 chr12 33714198 33714353 -110568136 + MIR SINE MIR 53 208 -54 196 318 91 11 chr12 33714369 33714457 -110568032 - L2 LINE L2 -811 2503 2409 2198 115 0 20 chr12 33714650 33714954 -110567535 - AluSx SINE Alu -14 298 1 1038 177 6 0 chr12 33717571 33717746 -110564743 - AluJb SINE Alu -1 311 136 1097 109 0 2 chr12 33717974 33718222 -110564267 - AluSc SINE Alu -16 293 1 2353 89 0 0 chr12 33718256 33718548 -110563941 - AluSg SINE Alu -18 292 1 2287 97 0 20 chr12 33718551 33718850 -110563639 - AluSg SINE Alu -17 293 1 2454 87 0 6 chr12 33718957 33719269 -110563220 - AluSx SINE Alu -2 310 1 24 32 0 0 chr12 33719292 33719323 -110563166 + AT_rich Low_complexity Low_complexity 1 31 0 1960 122 54 3 chr12 33719978 33720272 -110562217 - AluJb SINE Alu -3 309 1 396 0 0 0 chr12 33721694 33721738 -110560751 + (TA)n Simple_repeat Simple_repeat 2 45 0 2333 80 7 7 chr12 33722804 33723104 -110559385 - AluSq SINE Alu -13 300 1 361 290 36 79 chr12 33723138 33723441 -110559048 - L1MEd LINE L1 -5799 320 31 348 276 113 49 chr12 33723625 33723828 -110558661 - MIR SINE MIR -39 223 8 26 30 0 0 chr12 33723918 33723951 -110558538 + AT_rich Low_complexity Low_complexity 1 33 0 2520 68 0 0 chr12 33724132 33724442 -110558047 - AluY SINE Alu -1 310 1 2403 67 14 0 chr12 33724471 33724768 -110557721 - AluSp SINE Alu -12 301 1 2333 91 7 0 chr12 33725143 33725451 -110557038 - AluSp SINE Alu -3 310 1 2042 110 7 27 chr12 33726313 33726614 -110555875 + AluY SINE Alu 1 295 -16 2262 117 3 0 chr12 33726658 33726965 -110555524 + AluSx SINE Alu 5 312 0 213 121 0 0 chr12 33727274 33727307 -110555182 + (T)n Simple_repeat Simple_repeat 1 33 0 2065 117 0 0 chr12 33727575 33727866 -110554623 + AluSx SINE Alu 1 291 -21 524 233 160 13 chr12 33728022 33728172 -110554317 + MER5A DNA MER1_type 18 189 0 21 57 0 0 chr12 33732067 33732102 -110550387 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr12 33733816 33733838 -110548651 + AT_rich Low_complexity Low_complexity 1 22 0 1007 37 19 25 chr12 33735575 33735736 -110546753 + (TTC)n Simple_repeat Simple_repeat 2 161 0 2180 93 0 0 chr12 33735739 33736018 -110546471 - AluSg SINE Alu -31 279 1 1678 211 0 3 chr12 33736021 33736319 -110546170 - AluJb SINE Alu -15 297 1 1733 185 3 7 chr12 33736654 33736952 -110545537 - AluJo SINE Alu -13 299 3 2418 90 0 3 chr12 33737189 33737499 -110544990 - AluY SINE Alu -2 309 1 25 31 0 0 chr12 33737504 33737536 -110544953 + AT_rich Low_complexity Low_complexity 1 32 0 2028 102 7 4 chr12 33737549 33737824 -110544665 - AluSq SINE Alu -37 276 1 862 211 6 17 chr12 33737950 33738130 -110544359 - MER45A DNA AcHobo 0 178 1 2251 118 0 16 chr12 33738202 33738517 -110543972 + AluSg SINE Alu 1 310 0 2254 79 0 16 chr12 33739303 33739607 -110542882 + AluY SINE Alu 1 299 -12 301 291 46 53 chr12 33739684 33739799 -110542690 + MIR SINE MIR 53 168 -94 1568 101 50 126 chr12 33739799 33740116 -110542373 + AluSx SINE Alu 1 293 -19 301 291 46 53 chr12 33740116 33740151 -110542338 + MIR SINE MIR 168 202 -60 1203 134 205 13 chr12 33740217 33740456 -110542033 + AluSx SINE Alu 1 285 -27 482 168 0 53 chr12 33740558 33740653 -110541836 - AluJb SINE Alu -158 154 65 2365 85 0 13 chr12 33740947 33741254 -110541235 - AluY SINE Alu -8 303 1 438 304 57 30 chr12 33742464 33742694 -110539795 - L1ME4a LINE L1 -198 5923 5688 28 48 0 0 chr12 33742906 33742948 -110539541 + AT_rich Low_complexity Low_complexity 1 42 0 1904 136 24 21 chr12 33742950 33743237 -110539252 - AluSx SINE Alu -24 288 1 699 168 8 24 chr12 33743248 33743373 -110539116 - FLAM_A SINE Alu -8 125 3 2426 72 0 0 chr12 33744169 33744461 -110538028 + AluSg SINE Alu 1 292 -18 247 345 108 0 chr12 33745168 33745307 -110537182 - MIR SINE MIR -4 258 105 23 0 0 0 chr12 33745307 33745330 -110537159 + AT_rich Low_complexity Low_complexity 1 23 0 543 246 142 21 chr12 33745355 33745685 -110536804 - L1ME4a LINE L1 -844 5302 4933 2208 96 7 7 chr12 33745910 33746202 -110536287 - AluSg SINE Alu -13 297 6 192 40 0 0 chr12 33746643 33746668 -110535821 + (A)n Simple_repeat Simple_repeat 1 25 0 234 261 0 0 chr12 33746766 33746831 -110535658 + L1M4 LINE L1 3441 3505 -2641 200 261 22 0 chr12 33746840 33746886 -110535603 - MER5A DNA MER1_type -142 47 1 783 262 81 61 chr12 33749148 33749541 -110532948 - L2 LINE L2 0 3313 2913 1279 176 78 4 chr12 33749568 33749719 -110532770 - AluJo SINE Alu -24 288 111 183 42 0 0 chr12 33749719 33749743 -110532746 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1279 176 78 4 chr12 33749743 33749835 -110532654 - AluJo SINE Alu -201 111 27 2419 66 3 3 chr12 33750925 33751226 -110531263 + AluY SINE Alu 1 301 -10 370 287 91 14 chr12 33753465 33753608 -110528881 - MIR3 SINE MIR -11 197 44 1394 246 69 50 chr12 33753670 33754109 -110528380 + MER119 DNA MER1_type 8 463 -120 2076 96 19 0 chr12 33754109 33754407 -110528082 - AluSg SINE Alu 0 307 5 1394 246 69 50 chr12 33754407 33754531 -110527958 + MER119 DNA MER1_type 463 583 0 1818 152 41 7 chr12 33755245 33755535 -110526954 + AluJb SINE Alu 2 301 -11 474 307 82 13 chr12 33755619 33755850 -110526639 + MIR SINE MIR 14 260 -2 2176 100 0 0 chr12 33755889 33756242 -110526247 - AluSg SINE Alu 0 353 1 330 303 69 87 chr12 33756367 33756598 -110525891 - L2 LINE L2 -1 3271 3045 1079 193 0 21 chr12 33756601 33756788 -110525701 - AluJo SINE Alu -51 261 79 307 294 35 0 chr12 33761514 33761599 -110520890 - MIR3 SINE MIR -54 154 67 568 321 57 48 chr12 33762202 33762439 -110520050 - L2 LINE L2 -3 3310 3068 3533 36 0 0 chr12 33762439 33762859 -110519630 - L1PA3 LINE L1 0 6155 5736 568 321 57 48 chr12 33762859 33762954 -110519535 - L2 LINE L2 -245 3068 2975 347 277 15 46 chr12 33763170 33763300 -110519189 + MIR SINE MIR 23 148 -60 205 339 125 18 chr12 33764527 33764751 -110517738 - MIR SINE MIR -7 255 8 359 279 128 30 chr12 33765591 33765856 -110516633 + L1ME4a LINE L1 5588 5878 -243 529 323 63 5 chr12 33766174 33766363 -110516126 + L3 LINE CR1 1369 1568 -9 2166 58 47 14 chr12 33766834 33767112 -110515377 - AluY SINE Alu -24 287 1 307 180 0 0 chr12 33767349 33767399 -110515090 + 5S rRNA rRNA 1 50 -71 2177 122 0 0 chr12 33767675 33767971 -110514518 + AluSx SINE Alu 1 296 -16 236 349 83 60 chr12 33768733 33769321 -110513168 - L2 LINE L2 -338 2976 2375 1215 135 0 0 chr12 33770024 33770194 -110512295 - AluJ SINE Alu -14 298 129 765 159 0 8 chr12 33770400 33770526 -110511963 - AluJ SINE Alu -186 126 2 1293 191 65 14 chr12 33771676 33771954 -110510535 - AluJb SINE Alu -20 292 1 1953 150 25 0 chr12 33773121 33773407 -110509082 + AluJb SINE Alu 1 293 -19 1590 114 4 0 chr12 33773780 33774008 -110508481 + AluSp SINE Alu 74 302 -11 2004 84 4 8 chr12 33774322 33774583 -110507906 - AluY SINE Alu -51 260 1 365 183 24 37 chr12 33774583 33774707 -110507782 + MER41A LTR ERV1 395 474 -12 597 284 94 0 chr12 33774859 33775067 -110507422 + MIR SINE MIR 18 249 -13 366 67 0 0 chr12 33775326 33775371 -110507118 - Alu SINE Alu -258 45 1 270 242 61 30 chr12 33776065 33776164 -110506325 - L3 LINE CR1 -102 1475 1374 853 183 6 34 chr12 33776168 33776343 -110506146 + FRAM SINE Alu 1 167 -9 422 155 14 0 chr12 33776991 33777062 -110505427 + LTR48B LTR ERV1 1 72 -572 3224 189 17 34 chr12 33777062 33777709 -110504780 + L1M1 LINE L1 20 655 -6910 669 191 85 0 chr12 33777687 33777828 -110504661 + L1M1 LINE L1 220 372 -7193 * 11406 158 169 34 chr12 33777811 33778973 -110503516 + L1M1 LINE L1 885 1888 -5677 2671 40 0 3 chr12 33778973 33779277 -110503212 + AluY SINE Alu 1 303 -8 11406 158 169 34 chr12 33779277 33779545 -110502944 + L1M1 LINE L1 1888 2118 -5447 1556 150 0 0 chr12 33779545 33779772 -110502717 + AluSg/x SINE Alu 74 300 -12 11406 158 169 34 chr12 33779772 33780036 -110502453 + L1M1 LINE L1 2118 2345 -5220 2376 107 3 0 chr12 33780036 33780345 -110502144 + AluSg SINE Alu 1 310 0 11406 158 169 34 chr12 33780345 33780930 -110501559 + L1M1 LINE L1 2345 2849 -4716 1633 171 4 19 chr12 33780930 33781199 -110501290 + AluJo SINE Alu 1 265 -47 11406 158 169 34 chr12 33781199 33781510 -110500979 + L1M1 LINE L1 2849 3116 -4449 2294 92 7 0 chr12 33781510 33781815 -110500674 + AluY SINE Alu 1 307 -4 11406 158 169 34 chr12 33781815 33782477 -110500012 + L1M1 LINE L1 3116 3687 -3878 2863 107 49 5 chr12 33782477 33782926 -110499563 + L1MA2 LINE L1 5831 6299 -5 11406 158 169 34 chr12 33782926 33782947 -110499542 + L1M1 LINE L1 3687 4634 -2931 2276 114 3 0 chr12 33782958 33783256 -110499233 + AluSx SINE Alu 1 299 -13 877 113 46 26 chr12 33783256 33783397 -110499092 + LTR48B LTR ERV1 62 208 -436 991 156 19 0 chr12 33783397 33783551 -110498938 - MER4D LTR ERV1 0 903 747 1190 58 19 0 chr12 33783942 33784098 -110498391 - L1PA7 LINE L1 -2 6152 5994 1321 174 32 108 chr12 33784143 33784350 -110498139 - AluJb SINE Alu -20 292 116 1812 109 101 4 chr12 33784350 33784626 -110497863 + AluSc SINE Alu 1 303 -6 1321 174 32 108 chr12 33784626 33784734 -110497755 - AluJb SINE Alu -196 116 1 906 234 47 16 chr12 33784861 33785232 -110497257 + LTR29 LTR ERV1 137 565 -79 1644 152 3 20 chr12 33785241 33785538 -110496951 - AluSx SINE Alu -16 296 5 217 311 54 0 chr12 33785674 33785748 -110496741 + L2 LINE L2 3228 3305 -8 2075 91 17 3 chr12 33785749 33786036 -110496453 + AluY SINE Alu 2 292 -19 1259 146 194 8 chr12 33786136 33786389 -110496100 + AluSx SINE Alu 1 300 -12 3004 130 242 0 chr12 33786423 33786977 -110495512 - LTR12 LTR ERV1 0 688 1 794 233 34 48 chr12 33787060 33787352 -110495137 - pTR5 LTR ERV1 -1410 1028 741 1561 191 42 3 chr12 33787603 33787891 -110494598 + AluJo SINE Alu 1 299 -13 192 77 0 0 chr12 33787974 33788000 -110494489 + (TA)n Simple_repeat Simple_repeat 2 27 0 704 168 0 73 chr12 33788000 33788023 -110494466 - FLAM_A SINE Alu -175 127 104 2258 89 3 13 chr12 33788023 33788325 -110494164 + AluSc SINE Alu 1 299 -10 704 168 0 73 chr12 33788325 33788438 -110494051 - FLAM_A SINE Alu -198 104 1 2023 138 0 3 chr12 33788609 33788905 -110493584 - AluSx SINE Alu -17 295 1 2113 119 0 22 chr12 33788906 33789217 -110493272 - AluSx SINE Alu -8 304 1 579 227 0 0 chr12 33789499 33789609 -110492880 - FAM SINE Alu -63 122 13 246 273 117 16 chr12 33789619 33789747 -110492742 - MIR SINE MIR -109 153 13 195 146 42 0 chr12 33790125 33790173 -110492316 + L3 LINE CR1 1337 1386 -191 839 175 0 45 chr12 33790466 33790620 -110491869 + FAM SINE Alu 12 158 -27 210 143 0 0 chr12 33790626 33790661 -110491828 + (TCTCCC)n Simple_repeat Simple_repeat 1 35 0 722 170 0 0 chr12 33790661 33790773 -110491716 - AluJ SINE Alu -21 291 180 771 109 17 0 chr12 33790784 33790903 -110491586 - AluJ SINE Alu -186 126 6 243 0 0 0 chr12 33790923 33790950 -110491539 + (A)n Simple_repeat Simple_repeat 1 27 0 1901 38 0 0 chr12 33790952 33791164 -110491325 + AluY SINE Alu 87 298 -13 1252 107 11 0 chr12 33791166 33791344 -110491145 + AluSq SINE Alu 126 305 -8 2265 97 0 3 chr12 33791507 33791797 -110490692 + AluSx SINE Alu 1 289 -23 225 0 0 0 chr12 33793641 33793666 -110488823 + (CCG)n Simple_repeat Simple_repeat 2 26 0 2015 123 3 0 chr12 33794275 33794560 -110487929 - AluJo SINE Alu -26 286 1 1461 194 20 0 chr12 33794626 33794796 -110487693 - AluJo SINE Alu -12 300 120 231 36 0 0 chr12 33794796 33794824 -110487665 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 1461 194 20 0 chr12 33794824 33794947 -110487542 - AluJo SINE Alu -192 120 1 2467 70 7 3 chr12 33795558 33795856 -110486633 - AluSq SINE Alu -14 299 1 8499 115 30 34 chr12 33795856 33796277 -110486212 - Tigger1 DNA MER2_type -330 2088 1667 553 165 78 17 chr12 33796277 33796392 -110486097 - FLAM_C SINE Alu -11 122 1 8499 115 30 34 chr12 33796392 33797338 -110485151 - Tigger1 DNA MER2_type -751 1667 727 2367 86 0 19 chr12 33797339 33797653 -110484836 + AluY SINE Alu 1 308 -3 948 170 11 48 chr12 33797653 33797841 -110484648 - Tigger1 DNA MER2_type -2237 181 1 239 224 143 31 chr12 33797841 33797925 -110484564 + MER106B DNA MER1_type 962 1056 -3 1402 164 0 38 chr12 33798359 33798597 -110483892 + AluJo SINE Alu 1 229 -83 826 156 0 15 chr12 33798765 33798900 -110483589 + FLAM_C SINE Alu 1 133 0 2347 94 0 19 chr12 33798914 33799222 -110483267 + AluSq SINE Alu 3 304 -9 2063 115 28 3 chr12 33799525 33799812 -110482677 + AluSx SINE Alu 1 294 -18 2586 71 0 0 chr12 33799814 33800125 -110482364 + AluY SINE Alu 1 311 0 511 216 48 37 chr12 33800876 33801225 -110481264 - L1ME4a LINE L1 -1 6120 5709 600 262 0 0 chr12 33801295 33801436 -110481053 - FLAM_C SINE Alu 0 143 3 189 0 0 0 chr12 33801437 33801458 -110481031 + (T)n Simple_repeat Simple_repeat 1 21 0 598 135 42 0 chr12 33801458 33801554 -110480935 - HY3 scRNA scRNA -1 100 1 1554 145 0 125 chr12 33801837 33802031 -110480458 - AluJb SINE Alu 0 302 168 2066 81 0 0 chr12 33802031 33802279 -110480210 + AluSg SINE Alu 1 248 -62 1554 145 0 125 chr12 33802279 33802429 -110480060 - AluJb SINE Alu -134 168 1 1802 108 4 4 chr12 33802621 33802871 -110479618 + AluSq SINE Alu 1 250 -63 2146 136 7 0 chr12 33803039 33803347 -110479142 + AluJo SINE Alu 3 312 0 2295 92 0 7 chr12 33803439 33803743 -110478746 + AluSx SINE Alu 1 302 -10 207 188 31 16 chr12 33803781 33803845 -110478644 + (TA)n Simple_repeat Simple_repeat 1 65 0 1209 267 28 84 chr12 33803871 33804444 -110478045 + MER34 LTR ERV1 1 541 -1 736 190 0 0 chr12 33804735 33804856 -110477633 + FLAM_A SINE Alu 2 122 -11 2041 73 0 4 chr12 33805008 33805267 -110477222 - AluY SINE Alu -7 304 47 221 163 0 41 chr12 33805392 33805441 -110477048 - L2 LINE L2 0 3272 3226 267 291 28 111 chr12 33805557 33805846 -110476643 - L2 LINE L2 -182 3090 2826 1125 137 6 6 chr12 33805852 33806027 -110476462 - MER89 LTR ERV1 0 559 385 1691 164 3 17 chr12 33806040 33806327 -110476162 + AluJb SINE Alu 2 284 -28 1786 175 16 6 chr12 33806328 33806643 -110475846 + MER89 LTR ERV1 242 559 0 1088 193 8 42 chr12 33806917 33807176 -110475313 + LTR16C LTR ERVL 233 482 -9 2072 120 0 17 chr12 33807671 33807972 -110474517 - AluSq SINE Alu -17 296 1 1861 170 0 0 chr12 33807974 33808268 -110474221 - AluJb SINE Alu -18 294 1 1898 130 3 33 chr12 33808324 33808624 -110473865 - AluSq SINE Alu -7 306 16 378 110 30 40 chr12 33808639 33808739 -110473750 + CT-rich Low_complexity Low_complexity 4 102 0 807 99 22 39 chr12 33808739 33808921 -110473568 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 690 190 0 28 chr12 33808937 33809116 -110473373 + CT-rich Low_complexity Low_complexity 3 176 0 1918 134 0 11 chr12 33809128 33809404 -110473085 - AluSx SINE Alu -39 273 1 915 190 0 0 chr12 33809410 33809568 -110472921 - AluSq SINE Alu -25 288 131 1472 102 0 15 chr12 33809580 33809785 -110472704 - AluSx SINE Alu -6 306 105 2862 123 7 23 chr12 33809798 33810228 -110472261 - LTR10E LTR ERV1 -1 632 210 761 21 11 0 chr12 33810229 33810323 -110472166 - LTR10E LTR ERV1 -538 95 1 4536 270 11 25 chr12 33810387 33811386 -110471103 - HERVI LTR ERV1 -138 7647 6668 2333 70 3 58 chr12 33811386 33811715 -110470774 + AluY SINE Alu 1 311 0 4536 270 11 25 chr12 33811715 33811968 -110470521 - HERVI LTR ERV1 -1117 6668 6413 1566 189 93 0 chr12 33811970 33812293 -110470196 - LTR10E-int LTR ERV1 -3804 3092 2740 730 205 86 27 chr12 33812333 33812545 -110469944 - LTR10E-int LTR ERV1 -6424 225 5 857 125 26 33 chr12 33812549 33812701 -110469788 - LTR10E LTR ERV1 -2 631 481 659 109 11 0 chr12 33812702 33812794 -110469695 - AluSx SINE Alu -193 120 28 2501 97 46 0 chr12 33812794 33813144 -110469345 + MER51C LTR ERV1 275 640 0 1720 146 7 22 chr12 33813655 33813930 -110468559 - AluJb SINE Alu -14 298 28 402 100 0 0 chr12 33813935 33813995 -110468494 + Alu SINE Alu 241 300 -10 2145 122 0 0 chr12 33814005 33814291 -110468198 + AluSc SINE Alu 2 287 -22 2976 89 13 17 chr12 33814291 33814762 -110467727 + MER4A LTR ERV1 128 664 0 2573 162 40 120 chr12 33814804 33814908 -110467581 + MER67C LTR ERV1 52 163 -547 2067 111 4 4 chr12 33814908 33815215 -110467274 - AluSg SINE Alu 0 307 1 2573 162 40 120 chr12 33815215 33815340 -110467149 + MER67C LTR ERV1 163 296 -414 4153 99 23 44 chr12 33815340 33815926 -110466563 - LTR9B LTR ERV1 0 644 72 2394 51 0 74 chr12 33815926 33816262 -110466227 + AluY SINE Alu 1 311 0 4153 99 23 44 chr12 33816262 33816333 -110466156 - LTR9B LTR ERV1 -572 72 1 2573 162 40 120 chr12 33816333 33816423 -110466066 + MER67C LTR ERV1 296 392 -318 1838 173 10 19 chr12 33816423 33816736 -110465753 + AluJo SINE Alu 1 310 -2 2573 162 40 120 chr12 33816736 33816804 -110465685 + MER67C LTR ERV1 392 464 -246 4050 148 3 3 chr12 33816804 33817322 -110465167 + MER41B LTR ERV1 1 521 -114 2014 145 3 7 chr12 33817322 33817632 -110464857 - AluSg SINE Alu -1 309 1 4050 148 3 3 chr12 33817632 33817747 -110464742 + MER41B LTR ERV1 520 634 -1 2573 162 40 120 chr12 33817747 33818071 -110464418 + MER67C LTR ERV1 464 710 0 2388 67 3 13 chr12 33818332 33818631 -110463858 + AluSg SINE Alu 1 296 -14 250 346 47 16 chr12 33818751 33818878 -110463611 + L2 LINE L2 3180 3310 -3 1083 153 6 6 chr12 33818917 33819087 -110463402 + MER2 DNA MER2_type 3 172 -173 1943 133 10 17 chr12 33819091 33819392 -110463097 - AluSx SINE Alu -13 299 1 268 214 29 0 chr12 33819507 33819577 -110462912 + MER34 LTR ERV1 1 72 -470 1700 128 9 122 chr12 33819588 33819707 -110462782 + AluSx SINE Alu 11 142 -170 2216 79 14 0 chr12 33819707 33819987 -110462502 + AluY SINE Alu 1 324 0 312 0 0 25 chr12 33819987 33820027 -110462462 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 1700 128 9 122 chr12 33820027 33820241 -110462248 + AluSx SINE Alu 142 309 -3 2270 94 0 0 chr12 33820262 33820591 -110461898 + AluSq SINE Alu 1 329 0 1598 177 3 18 chr12 33820592 33820944 -110461545 + AluJb SINE Alu 3 350 0 1341 247 60 26 chr12 33820984 33821288 -110461201 + LTR29 LTR ERV1 137 427 -168 2009 142 0 7 chr12 33821288 33821583 -110460906 + AluSx SINE Alu 1 293 -19 1341 247 60 26 chr12 33821583 33821754 -110460735 + LTR29 LTR ERV1 427 591 -4 2228 108 0 3 chr12 33821781 33822078 -110460411 - AluY SINE Alu -15 296 1 609 194 47 23 chr12 33822126 33822255 -110460234 + MER110 LTR ERV1 360 491 0 1273 188 96 15 chr12 33822306 33822578 -110459911 - AluJo SINE Alu -18 294 1 2482 77 0 0 chr12 33822586 33822884 -110459605 - AluY SINE Alu -13 298 1 2179 163 22 38 chr12 33822895 33823348 -110459141 - L1MB8 LINE L1 0 6178 5733 336 24 0 0 chr12 33823438 33823479 -110459010 + (TG)n Simple_repeat Simple_repeat 2 42 0 2263 119 0 0 chr12 33823479 33823782 -110458707 - AluSx SINE Alu -9 303 1 745 182 0 30 chr12 33823789 33823921 -110458568 - FLAM_C SINE Alu -14 129 2 386 158 37 37 chr12 33824172 33824254 -110458235 + MER34B LTR ERV1 1 82 -483 742 124 34 22 chr12 33824257 33824435 -110458054 + GA-rich Low_complexity Low_complexity 1 180 0 523 249 120 17 chr12 33824504 33824745 -110457744 + MER34B LTR ERV1 178 443 -122 2088 101 42 0 chr12 33824836 33825122 -110457367 - AluSq SINE Alu -15 298 1 1419 135 200 108 chr12 33825254 33825333 -110457156 - MER4A LTR ERV1 0 664 594 1854 132 4 21 chr12 33825333 33825614 -110456875 - AluSx SINE Alu -17 295 20 1419 135 200 108 chr12 33825614 33825904 -110456585 - MER4A LTR ERV1 -70 594 261 652 105 0 67 chr12 33825904 33826009 -110456480 - MER4A LTR ERV1 -566 98 1 2351 97 0 0 chr12 33826081 33826380 -110456109 + AluY SINE Alu 1 299 -12 217 283 17 0 chr12 33826462 33826522 -110455967 + MIR SINE MIR 45 105 -157 1926 130 3 25 chr12 33826587 33826871 -110455618 - AluSx SINE Alu -34 278 1 266 224 153 10 chr12 33826871 33826969 -110455520 + MIR SINE MIR 92 203 -59 265 135 126 72 chr12 33826991 33827102 -110455387 - MER113 DNA MER1_type? -83 438 322 2275 77 20 3 chr12 33827781 33828080 -110454409 - AluSc SINE Alu -5 304 1 22 0 0 0 chr12 33828080 33828102 -110454387 + AT_rich Low_complexity Low_complexity 1 22 0 628 162 8 17 chr12 33828112 33828229 -110454260 - FLAM_C SINE Alu -27 116 1 27 0 0 0 chr12 33828315 33828342 -110454147 + AT_rich Low_complexity Low_complexity 1 27 0 2097 114 7 3 chr12 33828345 33828642 -110453847 + AluSq SINE Alu 1 298 -15 2250 69 3 3 chr12 33828645 33828933 -110453556 + AluY SINE Alu 2 289 -22 378 0 0 0 chr12 33828936 33828978 -110453511 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 643 174 26 9 chr12 33828978 33829093 -110453396 - FLAM_C SINE Alu -25 118 2 641 178 74 0 chr12 33829138 33829273 -110453216 - L1MA9 LINE L1 0 6312 6168 2468 88 0 0 chr12 33829273 33829579 -110452910 - AluSp SINE Alu -7 306 1 780 134 8 8 chr12 33829719 33829846 -110452643 + L1M2 LINE L1 5141 5267 -879 1393 130 9 13 chr12 33829894 33830125 -110452364 + L1M2 LINE L1 5256 5485 -827 1045 164 53 40 chr12 33830126 33830352 -110452137 + AluSx SINE Alu 1 229 -83 289 221 15 25 chr12 33830394 33830474 -110452015 + AluJ/FLAM SINE Alu 1 64 -238 2023 138 3 0 chr12 33830609 33830905 -110451584 + AluSx SINE Alu 3 299 -13 408 284 46 0 chr12 33830916 33831058 -110451431 - MIR SINE MIR -63 145 20 1954 178 12 35 chr12 33831075 33831474 -110451015 + MLT1B LTR MaLR 1 390 0 1035 89 0 15 chr12 33831695 33831830 -110450659 + AluSq/x SINE Alu 1 133 -179 1630 189 0 23 chr12 33832171 33832472 -110450017 + AluJb SINE Alu 3 296 -16 1354 142 47 126 chr12 33833383 33833621 -110448868 + MER4A LTR ERV1 372 580 -84 1854 132 4 21 chr12 33833621 33833902 -110448587 + AluSx SINE Alu 20 295 -17 1354 142 47 126 chr12 33833902 33833981 -110448508 + MER4A LTR ERV1 580 664 0 2131 104 31 0 chr12 33834113 33834402 -110448087 + AluSq SINE Alu 1 298 -15 523 249 120 17 chr12 33834493 33834734 -110447755 - MER34B LTR ERV1 -122 443 178 629 109 32 10 chr12 33834793 33834985 -110447504 + CT-rich Low_complexity Low_complexity 1 196 0 300 213 50 25 chr12 33834988 33835068 -110447421 - MER34B LTR ERV1 -483 82 1 745 182 0 30 chr12 33835319 33835451 -110447038 + FLAM_C SINE Alu 2 129 -14 2263 119 0 0 chr12 33835458 33835761 -110446728 + AluSx SINE Alu 1 303 -9 372 22 0 0 chr12 33835761 33835806 -110446683 + (CA)n Simple_repeat Simple_repeat 2 46 0 2179 163 22 38 chr12 33835896 33836349 -110446140 + L1MB8 LINE L1 5733 6178 0 2398 77 0 0 chr12 33836360 33836646 -110445843 + AluY SINE Alu 1 286 -25 821 143 0 57 chr12 33836795 33836935 -110445554 + FLAM_C SINE Alu 2 133 0 1002 153 0 29 chr12 33837078 33837248 -110445241 - FRAM SINE Alu -11 165 1 204 227 236 45 chr12 33837287 33837397 -110445092 - MIR SINE MIR -112 150 20 2271 105 7 3 chr12 33837438 33837732 -110444757 + AluSx SINE Alu 1 295 -17 1930 154 0 19 chr12 33837808 33838120 -110444369 + AluJb SINE Alu 1 306 -6 214 148 0 56 chr12 33838249 33838303 -110444186 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1666 184 10 16 chr12 33839410 33839715 -110442774 + AluJo SINE Alu 1 303 -9 24 0 0 0 chr12 33839768 33839792 -110442697 + AT_rich Low_complexity Low_complexity 1 24 0 2455 75 0 0 chr12 33839839 33840133 -110442356 - AluSg SINE Alu -16 294 1 2956 222 63 10 chr12 33840477 33841099 -110441390 + MSTD-int LTR MaLR 1081 1735 0 1393 160 113 73 chr12 33841099 33841480 -110441009 + MSTD LTR MaLR 1 396 0 290 154 46 15 chr12 33841482 33841547 -110440942 + LTR67 LTR ERVL 491 557 0 579 294 0 36 chr12 33841579 33841803 -110440686 + MIR SINE MIR 35 249 -13 26 0 0 0 chr12 33841813 33841839 -110440650 + AT_rich Low_complexity Low_complexity 1 26 0 1070 98 0 0 chr12 33842077 33842220 -110440269 + AluSg/x SINE Alu 168 310 0 562 271 147 55 chr12 33842224 33842626 -110439863 - MLT1L LTR MaLR -13 602 164 2004 154 0 0 chr12 33842659 33842951 -110439538 + AluJb SINE Alu 1 292 -20 30 0 0 0 chr12 33842951 33842981 -110439508 + AT_rich Low_complexity Low_complexity 1 30 0 407 250 106 0 chr12 33843781 33843885 -110438604 - L2 LINE L2 0 3313 3199 2101 106 6 42 chr12 33844405 33844717 -110437772 - AluSq SINE Alu -12 301 1 21 36 0 0 chr12 33844758 33844786 -110437703 + AT_rich Low_complexity Low_complexity 1 28 0 1147 190 109 78 chr12 33845075 33845125 -110437364 + L1ME LINE L1 4897 4944 -1202 1828 175 3 13 chr12 33845125 33845440 -110437049 - AluJb SINE Alu 0 312 1 1147 190 109 78 chr12 33845440 33845769 -110436720 + L1ME LINE L1 4944 5291 -855 2154 131 0 6 chr12 33845769 33846083 -110436406 + AluSx SINE Alu 1 312 0 1147 190 109 78 chr12 33846083 33846097 -110436392 + L1ME LINE L1 5291 5303 -843 1501 151 98 4 chr12 33846304 33846569 -110435920 + MLT1B LTR MaLR 24 313 -77 22 0 0 0 chr12 33846626 33846648 -110435841 + AT_rich Low_complexity Low_complexity 1 22 0 2489 80 0 0 chr12 33846872 33847173 -110435316 + AluY SINE Alu 1 301 -10 257 224 104 0 chr12 33847719 33847786 -110434703 + HsTC2 DNA Tc2 5 78 -1820 207 0 0 0 chr12 33847788 33847811 -110434678 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 247 123 0 70 chr12 33847882 33847939 -110434550 + L1ME LINE L1 5294 5346 -998 599 120 11 0 chr12 33847939 33848031 -110434458 - AluSg/x SINE Alu -14 296 204 791 136 21 21 chr12 33848031 33848171 -110434318 + L1ME LINE L1 5336 5475 -687 464 243 33 55 chr12 33848264 33848445 -110434044 + L1MC4 LINE L1 6866 7042 -1000 801 174 0 14 chr12 33848449 33848593 -110433896 + FRAM SINE Alu 1 40 0 590 250 91 27 chr12 33848662 33848882 -110433607 + L1MC5 LINE L1 7000 7233 -728 421 241 64 80 chr12 33848986 33849235 -110433254 + L1MC5 LINE L1 7260 7504 -457 336 113 38 0 chr12 33849303 33849356 -110433133 - LTR24B LTR ERV1 -5 571 517 1341 140 0 0 chr12 33849356 33849556 -110432933 + L1PB4 LINE L1 5799 5998 -158 717 154 0 0 chr12 33849560 33849670 -110432819 + AluSq/x SINE Alu 2 111 -202 264 169 197 56 chr12 33849671 33849731 -110432758 + FLAM_A SINE Alu 41 91 -211 419 29 58 0 chr12 33849731 33849800 -110432689 + (CAAAA)n Simple_repeat Simple_repeat 1 73 0 827 120 92 7 chr12 33849800 33849942 -110432547 + L1PB4 LINE L1 5998 6151 -5 623 268 57 25 chr12 33849943 33850260 -110432229 - LTR24B LTR ERV1 -43 533 207 298 177 127 28 chr12 33850301 33850391 -110432098 - LTR24B LTR ERV1 -370 95 1 1637 154 0 0 chr12 33850698 33850938 -110431551 - AluJo SINE Alu -21 291 52 606 151 8 59 chr12 33850951 33851070 -110431419 + AluJo/FLAM SINE Alu 10 122 -190 1077 173 0 17 chr12 33851070 33851249 -110431240 - AluSg/x SINE Alu -18 294 119 1795 112 0 0 chr12 33851262 33851494 -110430995 - AluSg SINE Alu -18 292 61 4008 256 82 24 chr12 33851597 33852120 -110430369 - L2 LINE L2 -497 2817 2326 2186 124 0 3 chr12 33852120 33852426 -110430063 + AluSx SINE Alu 1 305 -7 4008 256 82 24 chr12 33852426 33853338 -110429151 - L2 LINE L2 -988 2326 1299 828 219 0 0 chr12 33853406 33853552 -110428937 + FRAM SINE Alu 1 146 -30 501 62 0 0 chr12 33853552 33853617 -110428872 + (TAAA)n Simple_repeat Simple_repeat 2 66 0 954 239 70 78 chr12 33853633 33854006 -110428483 - L2 LINE L2 -2606 708 339 1474 172 128 0 chr12 33854353 33854603 -110427886 + AluSx SINE Alu 1 282 -30 378 0 0 0 chr12 33854712 33854754 -110427735 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 9132 32 4 0 chr12 33854754 33856590 -110425899 - L1PA3 LINE L1 -13 6142 4301 2376 83 3 0 chr12 33856603 33856893 -110425596 + AluSp SINE Alu 2 292 -21 2196 226 125 22 chr12 33856894 33857581 -110424908 - L1 LINE L1 -1722 4424 3667 2137 134 16 0 chr12 33857598 33857904 -110424585 - AluSx SINE Alu -1 311 1 1851 144 35 3 chr12 33857904 33858084 -110424405 - AluJb SINE Alu -2 310 116 246 32 0 0 chr12 33858084 33858115 -110424374 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1851 144 35 3 chr12 33858115 33858218 -110424271 - AluJb SINE Alu -196 116 18 1471 212 67 67 chr12 33859432 33859928 -110422561 + MLT1D LTR MaLR 8 503 -2 600 192 0 25 chr12 33859928 33860045 -110422444 + MER106B DNA MER1_type 25 138 -921 1156 128 48 0 chr12 33860045 33860233 -110422256 - Tigger1 DNA MER2_type 0 2418 2222 2113 123 3 23 chr12 33860238 33860538 -110421951 + AluSp SINE Alu 1 294 -19 2180 205 28 37 chr12 33860656 33861222 -110421267 - L1M4 LINE L1 -1136 5010 4450 2032 131 8 64 chr12 33861222 33861409 -110421080 + MER47A DNA MER2_type 1 197 -2126 2273 116 0 3 chr12 33861409 33861710 -110420779 + AluSx SINE Alu 1 300 -12 2032 131 8 64 chr12 33861710 33861838 -110420651 + MER47A DNA MER2_type 197 293 -2030 2229 110 0 31 chr12 33861838 33862157 -110420332 - AluSx SINE Alu -3 309 1 2032 131 8 64 chr12 33862157 33862228 -110420261 + MER47A DNA MER2_type 293 366 0 7701 29 2 13 chr12 33862267 33863549 -110418940 - L1PA4 LINE L1 -6 6149 4871 1810 141 0 0 chr12 33863754 33864016 -110418473 + AluSx SINE Alu 40 301 -11 295 141 31 0 chr12 33864180 33864244 -110418245 + CT-rich Low_complexity Low_complexity 1 66 0 1608 149 104 7 chr12 33865346 33865615 -110416874 + AluJb SINE Alu 3 297 -15 186 133 0 0 chr12 33866468 33866498 -110415991 + (T)n Simple_repeat Simple_repeat 1 30 0 1153 95 0 6 chr12 33866498 33866656 -110415833 - LTR17 LTR ERV1 -454 326 170 748 103 0 0 chr12 33866705 33866812 -110415677 - AluY SINE Alu -7 304 198 2394 80 10 0 chr12 33867000 33867302 -110415187 - AluY SINE Alu -5 306 2 2431 88 0 0 chr12 33867307 33867603 -110414886 - AluSx SINE Alu -16 296 1 2161 124 3 0 chr12 33867794 33868092 -110414397 - AluSx SINE Alu -13 299 1 2120 125 7 0 chr12 33868092 33868388 -110414101 - AluSq SINE Alu -15 298 1 234 0 0 0 chr12 33868398 33868424 -110414065 + (T)n Simple_repeat Simple_repeat 1 26 0 283 291 119 0 chr12 33868841 33868975 -110413514 + MIR SINE MIR 79 228 -34 1263 142 17 43 chr12 33869725 33869957 -110412532 + AluSg/x SINE Alu 85 310 -2 2310 103 0 7 chr12 33870261 33870571 -110411918 - AluSx SINE Alu -4 308 1 1689 138 24 71 chr12 33871222 33871411 -110411078 - AluJb SINE Alu 0 307 137 2504 63 0 3 chr12 33871411 33871713 -110410776 - AluY SINE Alu -10 301 1 1689 138 24 71 chr12 33871713 33871844 -110410645 - AluJb SINE Alu -170 137 1 2109 141 0 13 chr12 33871966 33872271 -110410218 - AluSx SINE Alu -11 301 1 2464 73 0 19 chr12 33872577 33872894 -110409595 - AluY SINE Alu 0 311 1 2347 75 34 0 chr12 33872896 33873188 -110409301 - AluSp SINE Alu -11 302 1 1701 191 7 3 chr12 33873189 33873493 -110408996 - AluJo SINE Alu -7 305 1 1018 168 51 141 chr12 33874210 33874613 -110407876 + MER67C LTR ERV1 2 372 -338 391 274 44 15 chr12 33874623 33874758 -110407731 - MLT1A2 LTR MaLR -50 324 186 2786 147 8 24 chr12 33874799 33875183 -110407306 + L1MA7 LINE L1 5787 6163 -128 1863 175 0 13 chr12 33875183 33875491 -110406998 + AluJo SINE Alu 1 304 -8 2786 147 8 24 chr12 33875491 33875597 -110406892 + L1MA7 LINE L1 6163 6269 -22 2145 89 3 0 chr12 33875687 33875996 -110406493 + AluY SINE Alu 1 310 0 755 190 0 0 chr12 33876156 33876298 -110406191 - FLAM_C SINE Alu 0 143 2 1836 170 3 3 chr12 33876310 33876622 -110405867 - AluJb SINE Alu 0 312 1 1887 148 3 17 chr12 33876631 33876790 -110405699 - AluJb SINE Alu -9 293 138 2263 110 0 23 chr12 33876790 33876961 -110405528 - AluSx SINE Alu -11 301 139 1994 110 68 0 chr12 33876961 33877242 -110405247 - AluSx SINE Alu -12 300 1 2263 110 0 23 chr12 33877242 33877378 -110405111 - AluSx SINE Alu -173 139 1 1887 148 3 17 chr12 33877378 33877515 -110404974 - AluJb SINE Alu -164 138 1 1476 211 65 16 chr12 33877562 33877884 -110404605 - MLT1C LTR MaLR 0 467 130 1230 194 61 5 chr12 33877884 33878165 -110404324 + MSTB LTR MaLR 1 328 -100 1874 176 48 53 chr12 33878165 33878627 -110403862 - LTR10B LTR ERV1 0 547 1 686 111 10 0 chr12 33878627 33878726 -110403763 + MSTB LTR MaLR 329 428 -4 610 128 32 72 chr12 33878732 33878857 -110403632 - MLT1C LTR MaLR -334 133 14 1660 158 7 61 chr12 33879068 33879191 -110403298 + AluJb SINE Alu 18 146 -166 2203 110 0 0 chr12 33879191 33879511 -110402978 + AluSx SINE Alu 1 320 0 1660 158 7 61 chr12 33879511 33879683 -110402806 + AluJb SINE Alu 146 298 -14 800 198 95 102 chr12 33879814 33880225 -110402264 - MER92C LTR ERV1 -2 552 57 2282 99 0 13 chr12 33880342 33880677 -110401812 - AluY SINE Alu 0 311 1 2164 97 23 16 chr12 33880707 33881017 -110401472 - AluSp SINE Alu -1 312 1 2215 128 0 0 chr12 33881029 33881326 -110401163 - AluSx SINE Alu -15 297 1 1951 123 33 0 chr12 33881333 33881488 -110401001 - AluSg SINE Alu -22 288 119 234 0 0 0 chr12 33881488 33881514 -110400975 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 1951 123 33 0 chr12 33881514 33881634 -110400855 - AluSg SINE Alu -191 119 4 259 170 0 21 chr12 33881642 33881689 -110400800 - MER92B LTR ERV1 -588 48 3 1209 273 120 27 chr12 33881893 33882486 -110400003 + Charlie7 DNA MER1_type 8 655 -1957 283 241 0 25 chr12 33882501 33882580 -110399909 + Charlie7 DNA MER1_type 2193 2269 -343 1903 108 0 0 chr12 33882580 33882830 -110399659 + AluSx SINE Alu 1 250 -62 464 136 0 0 chr12 33882831 33882941 -110399548 + AluSg/x SINE Alu 214 323 0 2254 95 0 7 chr12 33882967 33883263 -110399226 + MER1B DNA MER1_type 46 339 0 673 157 19 50 chr12 33883399 33883558 -110398931 - LTR37B LTR ERV1 0 468 315 2817 177 21 23 chr12 33883570 33884085 -110398404 + MLT2B3 LTR ERVL 1 514 -40 278 95 0 24 chr12 33884116 33884158 -110398331 + MLT2B3 LTR ERVL 506 546 -8 4396 127 55 24 chr12 33884206 33884832 -110397657 + Tigger3b DNA MER2_type 1 655 -2373 2355 100 3 0 chr12 33884832 33885131 -110397358 - AluSg SINE Alu -10 300 1 4396 127 55 24 chr12 33885131 33885245 -110397244 + Tigger3b DNA MER2_type 655 764 -467 1314 138 14 14 chr12 33885252 33885462 -110397027 + AluJo SINE Alu 85 294 -18 1436 124 5 5 chr12 33885483 33885692 -110396797 + AluJb SINE Alu 89 297 -15 939 115 47 0 chr12 33885712 33885855 -110396634 + Tigger3b DNA MER2_type 778 927 -304 1570 161 193 45 chr12 33885855 33886259 -110396230 + LTR44 LTR ERV1 1 464 -55 496 81 0 68 chr12 33886249 33886297 -110396192 + Tigger3b DNA MER2_type 1097 1140 -1888 * 1025 268 52 69 chr12 33886297 33886976 -110395513 + PABL_B LTR ERV1 1 667 0 496 81 0 68 chr12 33886976 33887001 -110395488 + Tigger3b DNA MER2_type 1140 1165 -66 180 0 0 0 chr12 33887026 33887046 -110395443 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1773 148 11 14 chr12 33887048 33887197 -110395292 - AluSx SINE Alu -30 282 133 2076 108 7 3 chr12 33887197 33887492 -110394997 - AluSg SINE Alu -14 296 1 1773 148 11 14 chr12 33887492 33887625 -110394864 - AluSx SINE Alu -179 133 1 383 74 19 0 chr12 33887625 33887679 -110394810 + LTR44 LTR ERV1 465 519 0 1639 122 129 0 chr12 33887679 33887950 -110394539 + Tigger3b DNA MER2_type 924 1229 -2 320 174 12 58 chr12 33887970 33888056 -110394433 - LTR37B LTR ERV1 -243 225 144 543 292 39 7 chr12 33888075 33888229 -110394260 + MER58A DNA MER1_type 14 172 -52 3282 92 14 0 chr12 33888356 33888782 -110393707 + LTR3 LTR ERVK 1 432 0 4310 92 0 0 chr12 33888884 33889438 -110393051 + MER41A LTR ERV1 1 554 0 279 164 0 18 chr12 33889438 33889493 -110392996 - LTR37B LTR ERV1 -408 60 7 194 219 0 0 chr12 33889577 33889618 -110392871 - L2 LINE L2 -5 3308 3268 2630 57 0 0 chr12 33889712 33890010 -110392479 - AluY SINE Alu -11 300 3 2525 66 0 7 chr12 33890023 33890327 -110392162 - AluY SINE Alu -9 302 1 949 192 0 0 chr12 33890475 33890647 -110391842 - AluJb SINE Alu -9 303 132 2257 110 0 0 chr12 33890660 33890959 -110391530 + AluSx SINE Alu 1 299 -13 922 276 45 55 chr12 33891239 33891997 -110390492 + L1MC/D LINE L1 4698 5437 -743 21 36 0 0 chr12 33892052 33892080 -110390409 + AT_rich Low_complexity Low_complexity 1 28 0 2220 120 0 17 chr12 33892090 33892391 -110390098 - AluSx SINE Alu -16 296 1 1937 149 3 23 chr12 33892796 33893105 -110389384 - AluJb SINE Alu -9 303 1 215 300 22 22 chr12 33893296 33893386 -110389103 + L2 LINE L2 2684 2773 -541 229 279 118 43 chr12 33894003 33894257 -110388232 + L2 LINE L2 2811 3083 -189 200 35 35 0 chr12 33894278 33894307 -110388182 + (TTA)n Simple_repeat Simple_repeat 2 31 0 399 267 127 6 chr12 33894320 33894485 -110388004 - MIR SINE MIR -8 254 70 212 271 17 0 chr12 33894622 33894681 -110387808 + L2 LINE L2 3213 3272 0 2278 87 3 3 chr12 33894972 33895271 -110387218 - AluSx SINE Alu -13 299 1 676 191 87 16 chr12 33895479 33895662 -110386827 + L2 LINE L2 2709 2904 -410 469 296 17 43 chr12 33895658 33895891 -110386598 + L2 LINE L2 3032 3258 -55 * 2530 74 0 3 chr12 33896347 33896659 -110385830 - AluY SINE Alu 0 311 1 2501 70 7 3 chr12 33896659 33896961 -110385528 - AluSq SINE Alu -10 303 1 12821 117 23 50 chr12 33896961 33897382 -110385107 - Tigger1 DNA MER2_type -330 2088 1657 578 157 78 17 chr12 33897382 33897497 -110384992 - FLAM_C SINE Alu -11 122 1 12821 117 23 50 chr12 33897497 33898444 -110384045 - Tigger1 DNA MER2_type -761 1657 686 2330 81 13 19 chr12 33898444 33898754 -110383735 + AluY SINE Alu 1 308 -3 12821 117 23 50 chr12 33898754 33899226 -110383263 - Tigger1 DNA MER2_type -1732 686 203 2178 116 0 7 chr12 33899226 33899511 -110382978 - AluSg SINE Alu -27 283 1 12821 117 23 50 chr12 33899511 33899626 -110382863 - Tigger1 DNA MER2_type -2215 203 192 2368 88 10 7 chr12 33899626 33899932 -110382557 + AluSg SINE Alu 1 307 -3 12821 117 23 50 chr12 33899932 33900119 -110382370 - Tigger1 DNA MER2_type -2226 192 1 239 224 143 31 chr12 33900119 33900203 -110382286 + MER106B DNA MER1_type 962 1056 -3 1811 164 0 35 chr12 33900637 33900948 -110381541 + AluJo SINE Alu 1 300 -12 2411 80 0 0 chr12 33901252 33901551 -110380938 - AluY SINE Alu -12 299 1 325 311 22 49 chr12 33901915 33902098 -110380391 + L3 LINE CR1 1328 1505 -72 278 303 30 20 chr12 33902389 33902488 -110380001 + Charlie8 DNA MER1_type 121 220 -2197 316 119 45 0 chr12 33902492 33902559 -110379930 + C-rich Low_complexity Low_complexity 3 72 0 2237 114 3 0 chr12 33902559 33902858 -110379631 - AluSx SINE Alu -12 300 1 1713 187 3 7 chr12 33902858 33903157 -110379332 - AluJb SINE Alu 0 312 14 2033 152 0 0 chr12 33904557 33904859 -110377630 - AluSx SINE Alu -10 302 1 2242 112 0 3 chr12 33905274 33905569 -110376920 - AluSx SINE Alu -18 294 1 274 366 139 28 chr12 33905584 33905800 -110376689 - MIR SINE MIR 0 262 23 182 224 0 13 chr12 33905898 33905929 -110376560 + (TA)n Simple_repeat Simple_repeat 2 32 -44 1749 178 8 37 chr12 33905929 33906306 -110376183 + MER47A DNA MER2_type 1 366 0 182 224 0 13 chr12 33906306 33906350 -110376139 + (TA)n Simple_repeat Simple_repeat 32 76 0 222 62 0 0 chr12 33906824 33906856 -110375633 + (TG)n Simple_repeat Simple_repeat 1 32 0 2233 96 7 3 chr12 33907029 33907330 -110375159 - AluSc SINE Alu -7 302 1 185 0 40 0 chr12 33907937 33907962 -110374527 + (TTG)n Simple_repeat Simple_repeat 2 27 0 975 51 8 0 chr12 33907964 33908082 -110374407 - AluSg/x SINE Alu -24 285 167 2353 89 3 0 chr12 33908942 33909244 -110373245 - AluSx SINE Alu -9 303 1 218 245 137 20 chr12 33909321 33909423 -110373066 + L2 LINE L2 3197 3310 -3 2339 99 3 3 chr12 33909594 33909907 -110372582 + AluSq SINE Alu 1 313 0 416 50 0 17 chr12 33909915 33909975 -110372514 + (TCTA)n Simple_repeat Simple_repeat 1 59 0 188 235 61 52 chr12 33910443 33910558 -110371931 + L2 LINE L2 3080 3195 -118 1759 235 97 67 chr12 33910607 33911657 -110370832 - L1ME3A LINE L1 -16 6154 5078 511 311 0 0 chr12 33913387 33913509 -110368980 - L2 LINE L2 -14 3258 3137 204 297 81 43 chr12 33913754 33913939 -110368550 - L2 LINE L2 -858 2456 2265 478 204 12 31 chr12 33914239 33914401 -110368088 + CT-rich Low_complexity Low_complexity 4 162 0 1693 177 37 3 chr12 33914408 33914702 -110367787 - AluJo SINE Alu -8 304 1 1707 194 0 10 chr12 33915327 33915626 -110366863 + AluJb SINE Alu 1 296 -16 2019 150 0 0 chr12 33916209 33916503 -110365986 + AluSx SINE Alu 2 295 -17 1304 214 31 21 chr12 33917160 33917362 -110365127 - MLT1A1 LTR MaLR -73 292 85 2580 109 37 0 chr12 33917362 33917712 -110364777 - THE1B LTR MaLR -1 363 1 1304 214 31 21 chr12 33917712 33917798 -110364691 - MLT1A1 LTR MaLR -280 85 1 256 238 32 0 chr12 33918147 33918210 -110364279 - MER91B DNA MER1_type -125 65 1 2177 96 0 0 chr12 33919426 33919707 -110362782 - AluSx SINE Alu -11 301 21 1568 164 96 11 chr12 33919716 33919996 -110362493 - AluJo SINE Alu -8 304 1 3090 154 11 11 chr12 33920381 33920907 -110361582 - L1PA16 LINE L1 0 6166 5641 1456 173 4 0 chr12 33920986 33921223 -110361266 + AluJb SINE Alu 42 279 -33 330 181 43 9 chr12 33921223 33921339 -110361150 + (TA)n Simple_repeat Simple_repeat 2 121 0 216 170 38 19 chr12 33924399 33924452 -110358037 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 221 224 0 59 chr12 33924459 33924544 -110357945 + MIR SINE MIR 183 262 0 332 266 11 11 chr12 33924927 33925021 -110357468 - Zaphod DNA AcHobo 0 4031 3938 586 229 65 18 chr12 33925321 33925491 -110356998 + MIR SINE MIR 15 192 -70 706 153 21 90 chr12 33925491 33925567 -110356922 + AluJb SINE Alu 2 65 -247 2467 80 0 6 chr12 33925567 33925879 -110356610 - AluSq SINE Alu -3 310 1 706 153 21 90 chr12 33925879 33925946 -110356543 + AluJb SINE Alu 65 135 -177 248 267 107 0 chr12 33925965 33926040 -110356449 + MIR SINE MIR 180 262 0 354 266 65 57 chr12 33926240 33926364 -110356125 + L2 LINE L2 3145 3269 -3 2255 100 3 0 chr12 33926413 33926704 -110355785 - AluSx SINE Alu -20 292 1 464 267 71 53 chr12 33927397 33927622 -110354867 + MIR SINE MIR 32 260 -2 346 333 23 38 chr12 33929193 33929325 -110353164 + L2 LINE L2 3137 3266 -6 353 274 58 16 chr12 33929920 33930093 -110352396 + MIR SINE MIR 81 261 -1 3370 155 42 33 chr12 33930148 33930170 -110352319 + L1MB8 LINE L1 5146 5166 -1012 1758 133 0 84 chr12 33930170 33930492 -110351997 + AluJo SINE Alu 1 295 -17 3370 155 42 33 chr12 33930492 33931247 -110351242 + L1MB8 LINE L1 5166 5919 -259 1847 150 6 26 chr12 33931247 33931560 -110350929 - AluJb SINE Alu -5 307 1 487 283 0 26 chr12 33931763 33931915 -110350574 + MIR SINE MIR 70 217 -45 506 312 7 0 chr12 33932891 33933029 -110349460 + MER91B DNA MER1_type 1 139 -51 6046 48 39 17 chr12 33933180 33933734 -110348755 + MER4E LTR ERV1 1 577 -189 2426 79 3 10 chr12 33933734 33934038 -110348451 - AluSc SINE Alu -7 302 1 6046 48 39 17 chr12 33934038 33934233 -110348256 + MER4E LTR ERV1 577 766 0 638 147 101 0 chr12 33934395 33934524 -110347965 - L1MA8 LINE L1 -2 6289 6148 659 62 73 0 chr12 33935013 33935109 -110347380 - L1MA8 LINE L1 -141 6150 6048 1281 28 0 0 chr12 33935330 33935474 -110347015 + L1PA5 LINE L1 6011 6154 0 921 187 39 124 chr12 33935575 33935906 -110346583 + MER46C DNA MER2_type 20 322 -16 26 50 0 0 chr12 33936648 33936688 -110345801 + AT_rich Low_complexity Low_complexity 1 40 0 360 313 60 8 chr12 33936732 33936866 -110345623 - MIR SINE MIR -1 261 121 256 329 114 19 chr12 33936878 33937036 -110345453 + MER20 DNA MER1_type 2 174 -45 385 290 122 0 chr12 33937713 33937844 -110344645 - MER5A DNA MER1_type -30 159 13 2294 103 7 3 chr12 33938210 33938520 -110343969 - AluSq SINE Alu -2 311 1 2299 87 6 6 chr12 33938710 33939021 -110343468 + AluY SINE Alu 1 311 0 1587 164 31 45 chr12 33940199 33940517 -110341972 - AluJb SINE Alu 0 314 1 23 0 0 0 chr12 33940953 33940976 -110341513 + AT_rich Low_complexity Low_complexity 1 23 0 401 232 49 76 chr12 33941091 33941158 -110341331 - MLT1J LTR MaLR -4 507 440 2431 80 3 3 chr12 33941158 33941460 -110341029 - AluY SINE Alu -9 302 1 401 232 49 76 chr12 33941460 33941577 -110340912 - MLT1J LTR MaLR -71 440 328 530 307 74 5 chr12 33941637 33941852 -110340637 - MLT1J LTR MaLR -276 235 6 1734 169 6 32 chr12 33942011 33942325 -110340164 + AluJb SINE Alu 1 306 -6 680 273 29 54 chr12 33942900 33943067 -110339422 + Charlie8 DNA MER1_type 1 162 -179 2415 85 0 0 chr12 33943067 33943374 -110339115 + AluY SINE Alu 1 307 -4 680 273 29 54 chr12 33943374 33943448 -110339041 + Charlie8 DNA MER1_type 162 236 -105 1839 168 7 7 chr12 33943456 33943760 -110338729 - AluJb SINE Alu -8 304 1 2368 88 0 25 chr12 33944302 33944621 -110337868 + AluY SINE Alu 1 311 0 2430 64 0 7 chr12 33944850 33945146 -110337343 + AluY SINE Alu 1 294 -17 1004 244 25 0 chr12 33945149 33945350 -110337139 + MER58A DNA MER1_type 16 221 -3 1074 167 235 0 chr12 33945450 33945671 -110336818 - AluJb SINE Alu -39 273 1 2524 69 3 0 chr12 33946360 33946664 -110335825 - AluSp SINE Alu -8 305 1 2209 92 0 33 chr12 33946666 33946971 -110335518 - AluSg SINE Alu -13 297 3 1944 154 13 16 chr12 33947044 33947349 -110335140 - AluJb SINE Alu -8 304 1 255 279 0 0 chr12 33947356 33947417 -110335072 - L2 LINE L2 -2 3311 3251 1624 139 58 30 chr12 33947757 33948052 -110334437 + AluSx SINE Alu 1 303 -9 2397 97 0 3 chr12 33948696 33949006 -110333483 + AluSc SINE Alu 1 309 0 2247 117 3 0 chr12 33949300 33949600 -110332889 + AluSx SINE Alu 1 301 -11 183 42 0 0 chr12 33949672 33949696 -110332793 + (CAAT)n Simple_repeat Simple_repeat 3 26 0 199 345 71 24 chr12 33949752 33949836 -110332653 + L2 LINE L2 3150 3237 -35 2485 97 0 0 chr12 33950142 33950453 -110332036 - AluSx SINE Alu -1 311 1 1283 121 0 0 chr12 33950607 33950781 -110331708 - AluSg/x SINE Alu -5 305 132 577 286 74 65 chr12 33951350 33951623 -110330866 + L1ME4a LINE L1 5529 5809 -312 2281 90 0 39 chr12 33951623 33951935 -110330554 + AluSx SINE Alu 1 300 -12 577 286 74 65 chr12 33951935 33952136 -110330353 + L1ME4a LINE L1 5809 6007 -114 637 203 50 33 chr12 33952610 33952750 -110329739 + L1ME3 LINE L1 5786 5932 -230 1552 158 119 112 chr12 33952750 33953213 -110329276 + MLT1C LTR MaLR 1 466 -1 637 203 50 33 chr12 33953213 33953280 -110329209 + L1ME3 LINE L1 5932 5996 -166 1847 163 17 0 chr12 33953402 33953690 -110328799 - AluJb SINE Alu -17 295 3 1768 157 39 14 chr12 33953712 33953998 -110328491 - AluJb SINE Alu -19 293 1 2028 189 65 27 chr12 33954320 33954769 -110327720 - MER31B LTR ERV1 0 466 1 2153 100 4 0 chr12 33955570 33955841 -110326648 + AluSc SINE Alu 1 272 -37 201 39 0 0 chr12 33955846 33955872 -110326617 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 332 261 143 56 chr12 33956075 33956236 -110326253 + L2 LINE L2 2806 2980 -333 449 259 61 8 chr12 33956236 33956367 -110326122 - Charlie4a DNA MER1_type 0 508 371 2147 129 7 0 chr12 33956375 33956669 -110325820 - AluSx SINE Alu -16 296 1 25 0 0 0 chr12 33956672 33956697 -110325792 + AT_rich Low_complexity Low_complexity 1 25 0 1784 136 12 59 chr12 33956703 33957026 -110325463 + AluJb SINE Alu 1 308 -4 794 253 130 75 chr12 33957051 33957413 -110325076 + MLT1H LTR MaLR 5 447 -102 2447 79 0 3 chr12 33957413 33957718 -110324771 + AluY SINE Alu 1 304 -7 794 253 130 75 chr12 33957718 33957828 -110324661 + MLT1H LTR MaLR 447 549 0 * 1324 228 46 3 chr12 33957828 33958130 -110324359 - Charlie4a DNA MER1_type -177 331 17 359 213 32 21 chr12 33958167 33958261 -110324228 + L2 LINE L2 3005 3099 -214 277 368 0 17 chr12 33960035 33960152 -110322337 - L2 LINE L2 -210 3062 2948 250 348 65 19 chr12 33960554 33960709 -110321780 - L2 LINE L2 -557 2757 2596 368 287 276 8 chr12 33961436 33961823 -110320666 + L2 LINE L2 718 1208 -2106 323 22 0 22 chr12 33961845 33961890 -110320599 + (GAGTG)n Simple_repeat Simple_repeat 5 48 0 203 290 16 16 chr12 33961890 33961952 -110320537 + MIR SINE MIR 18 79 -183 554 272 166 30 chr12 33962356 33962687 -110319802 + L2 LINE L2 1871 2246 -1068 462 284 88 109 chr12 33962689 33962814 -110319675 + L2 LINE L2 2792 2918 -395 1613 132 0 0 chr12 33962814 33963041 -110319448 + AluJb SINE Alu 86 312 0 462 284 88 109 chr12 33963041 33963375 -110319114 + L2 LINE L2 2918 3268 -45 651 233 7 0 chr12 33964180 33964326 -110318163 + MER103 DNA DNA 13 159 -7 2096 221 29 54 chr12 33964523 33965079 -110317410 + MER34 LTR ERV1 1 542 0 2103 104 7 0 chr12 33965131 33965431 -110317058 - AluSp SINE Alu 0 303 2 1431 171 10 48 chr12 33965852 33966144 -110316345 - L1MB8 LINE L1 -11 6167 5887 288 0 0 0 chr12 33966353 33966385 -110316104 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2319 59 0 10 chr12 33966387 33966676 -110315813 - AluY SINE Alu -23 288 3 2220 117 0 0 chr12 33967840 33968138 -110314351 - AluSx SINE Alu -14 298 1 227 94 0 0 chr12 33968352 33968384 -110314105 + L1PA16 LINE L1 6030 6061 -105 361 102 17 0 chr12 33968385 33968444 -110314045 + L1PA16 LINE L1 6098 6157 -9 2562 34 40 25 chr12 33968578 33968899 -110313590 - LTR17 LTR ERV1 -454 326 1 2177 68 0 0 chr12 33968899 33969165 -110313324 - HERV17 LTR ERV1 0 8626 8361 250 65 0 0 chr12 33969164 33969195 -110313294 - HERV17 LTR ERV1 -8595 31 1 * 3946 57 21 30 chr12 33969195 33969725 -110312764 - LTR17 LTR ERV1 0 780 256 776 265 19 67 chr12 33970232 33970500 -110311989 - MIR SINE MIR -5 257 3 27 29 0 0 chr12 33970606 33970640 -110311849 + AT_rich Low_complexity Low_complexity 1 34 0 2884 106 7 2 chr12 33971140 33971544 -110310945 + MER61B LTR ERV1 20 425 0 750 110 0 20 chr12 33972524 33972624 -110309865 - AluSg/x SINE Alu -130 180 83 3523 79 7 0 chr12 33972626 33973068 -110309421 + PABL_A LTR ERV1 216 660 0 227 355 65 0 chr12 33973240 33973364 -110309125 - MIR3 SINE MIR -75 133 2 1131 231 40 35 chr12 33973457 33973822 -110308667 - LTR24B LTR ERV1 0 514 145 1896 138 24 0 chr12 33975113 33975402 -110307087 - AluSg SINE Alu -14 296 1 652 162 196 0 chr12 33976138 33976286 -110306203 + MER5A DNA MER1_type 7 183 -6 2077 106 0 0 chr12 33976471 33976736 -110305753 - AluSx SINE Alu -47 265 1 21 57 0 0 chr12 33977112 33977147 -110305342 + AT_rich Low_complexity Low_complexity 1 35 0 1605 162 39 18 chr12 33977152 33977436 -110305053 + AluJo SINE Alu 1 290 -22 463 237 57 48 chr12 33977557 33977785 -110304704 + L1M4 LINE L1 5038 5267 -879 398 244 41 111 chr12 33977787 33977959 -110304530 - L2 LINE L2 -4 3309 3150 2116 100 0 4 chr12 33978376 33978646 -110303843 - AluSx SINE Alu -14 298 30 1753 158 16 50 chr12 33979500 33979823 -110302666 - AluJo SINE Alu 0 312 1 720 327 37 11 chr12 33979924 33980279 -110302210 + L1MEc LINE L1 41 404 -5992 2213 113 0 3 chr12 33980461 33980754 -110301735 + AluSx SINE Alu 1 292 -20 287 336 80 36 chr12 33980877 33981014 -110301475 - L2 LINE L2 -9 3263 3121 * 791 298 29 4 chr12 33981008 33981253 -110301236 - MIR SINE MIR 0 262 12 21 36 0 0 chr12 33981303 33981331 -110301158 + AT_rich Low_complexity Low_complexity 1 28 0 2227 104 7 0 chr12 33981685 33981983 -110300506 - AluSg1 SINE Alu -9 300 1 1004 197 183 80 chr12 33982049 33982099 -110300390 - MLT1C LTR MaLR 0 467 424 1803 156 31 0 chr12 33982099 33982388 -110300101 - AluJb SINE Alu -14 298 1 1004 197 183 80 chr12 33982388 33982775 -110299714 - MLT1C LTR MaLR -43 424 1 244 180 60 0 chr12 33984029 33984079 -110298410 + L2 LINE L2 3255 3307 -6 360 270 15 96 chr12 33984528 33984615 -110297874 - MER112 DNA MER1_type -12 248 155 186 103 0 0 chr12 33984615 33984644 -110297845 + (AATAG)n Simple_repeat Simple_repeat 5 33 0 360 270 15 96 chr12 33984644 33984826 -110297663 - MER112 DNA MER1_type -105 155 1 445 263 211 0 chr12 33984854 33985006 -110297483 - Charlie8 DNA MER1_type -2163 254 71 2403 97 0 0 chr12 33985025 33985325 -110297164 + AluSp SINE Alu 1 300 -13 1046 239 31 50 chr12 33985519 33985837 -110296652 + MLT1I LTR MaLR 98 409 0 4332 177 61 42 chr12 33985899 33986835 -110295654 + LTR13 LTR ERVK 1 954 0 1143 210 60 118 chr12 33986841 33987461 -110295028 + L1ME3A LINE L1 5345 5873 -297 937 271 25 21 chr12 33987459 33987784 -110294705 - L1ME LINE L1 -371 5799 5474 * 2371 96 0 0 chr12 33988014 33988317 -110294172 - AluSc SINE Alu -6 303 1 258 311 85 9 chr12 33988478 33988584 -110293905 - MIR SINE MIR -57 151 38 533 223 14 126 chr12 33988723 33988900 -110293589 + MIR SINE MIR 33 176 -86 1884 167 10 0 chr12 33988900 33989199 -110293290 + AluJo SINE Alu 1 302 -10 533 223 14 126 chr12 33989199 33989263 -110293226 + MIR SINE MIR 176 246 -16 34 24 0 0 chr12 33989275 33989316 -110293173 + AT_rich Low_complexity Low_complexity 1 41 0 523 239 222 6 chr12 33989435 33989729 -110292760 - L2 LINE L2 -233 3080 2718 1667 181 7 104 chr12 33989871 33990285 -110292204 + MLT1A2 LTR MaLR 1 374 0 342 247 14 0 chr12 33990789 33990862 -110291627 - L2 LINE L2 -8 3305 3232 224 310 78 14 chr12 33991470 33991612 -110290877 - L2 LINE L2 -64 3249 3099 1914 149 0 34 chr12 33992067 33992388 -110290101 + AluJb SINE Alu 1 310 -2 3082 157 93 4 chr12 33992435 33992975 -110289514 + LTR69 LTR ERVL 1 588 0 474 74 78 15 chr12 33993013 33993270 -110289219 + (TA)n Simple_repeat Simple_repeat 1 273 0 498 307 35 61 chr12 33993271 33993646 -110288843 + L1MC4a LINE L1 5462 5826 -1982 979 179 22 6 chr12 33993729 33993908 -110288581 + MLT1D LTR MaLR 305 486 -19 1912 148 0 23 chr12 33994248 33994551 -110287938 - AluJb SINE Alu -16 296 1 705 204 121 46 chr12 33994838 33995078 -110287411 - MIR SINE MIR -3 259 2 3349 96 96 2 chr12 33996121 33996578 -110285911 + MER61D LTR ERV1 1 500 -1 1629 248 119 57 chr12 33996696 33997139 -110285350 + L2 LINE L2 1575 1989 -1325 2296 88 7 0 chr12 33997139 33997447 -110285042 - AluSx SINE Alu 0 312 1 2011 105 10 49 chr12 33997447 33997753 -110284736 - AluSx SINE Alu -18 294 1 1629 248 119 57 chr12 33997753 33997997 -110284492 + L2 LINE L2 1989 2317 -997 1532 173 76 0 chr12 33997997 33998274 -110284215 - AluJo SINE Alu -14 298 1 1629 248 119 57 chr12 33998274 33998343 -110284146 + L2 LINE L2 2317 2380 -934 511 252 36 22 chr12 33998396 33998535 -110283954 + L2 LINE L2 3173 3313 0 1711 197 0 0 chr12 33998604 33998894 -110283595 - AluJb SINE Alu -22 290 1 795 181 0 0 chr12 33998922 33999055 -110283434 - FLAM_A SINE Alu 0 133 1 2396 106 3 0 chr12 33999190 33999501 -110282988 - AluSx SINE Alu 0 312 1 568 248 213 5 chr12 33999523 33999725 -110282764 - MIR SINE MIR -14 248 5 950 51 0 0 chr12 33999893 34000011 -110282478 + AluY SINE Alu 190 307 -4 485 353 6 0 chr12 34000131 34000287 -110282202 - MIR SINE MIR -105 157 1 2486 81 0 0 chr12 34000323 34000620 -110281869 + AluSc SINE Alu 1 297 -12 1901 137 3 51 chr12 34001836 34002149 -110280340 + AluJb SINE Alu 1 298 -14 815 270 14 5 chr12 34002197 34002412 -110280077 - MIR SINE MIR -1 261 45 2076 124 6 19 chr12 34002691 34003006 -110279483 - AluSx SINE Alu -1 311 1 1832 145 35 3 chr12 34003007 34003186 -110279303 - AluJb SINE Alu -3 309 116 246 32 0 0 chr12 34003186 34003217 -110279272 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1832 145 35 3 chr12 34003217 34003320 -110279169 - AluJb SINE Alu -196 116 18 1526 213 62 66 chr12 34004534 34005032 -110277457 + MLT1D LTR MaLR 8 503 -2 606 192 0 25 chr12 34005032 34005149 -110277340 + MER106B DNA MER1_type 25 138 -921 1172 128 48 0 chr12 34005149 34005337 -110277152 - Tigger1 DNA MER2_type 0 2418 2222 2354 101 13 0 chr12 34005342 34005650 -110276839 + AluSp SINE Alu 1 312 -1 2264 228 65 41 chr12 34005659 34006270 -110276219 + L1ME1 LINE L1 5485 6110 -56 2047 130 35 0 chr12 34006270 34006554 -110275935 + AluSx SINE Alu 1 294 -18 328 232 21 32 chr12 34006831 34006926 -110275563 + MIR SINE MIR 168 261 -1 3673 121 112 26 chr12 34007214 34007722 -110274767 + Tigger1 DNA MER2_type 125 773 -1645 2202 119 3 0 chr12 34007722 34008024 -110274465 - AluSx SINE Alu -7 305 3 3673 121 112 26 chr12 34008024 34008283 -110274206 + Tigger1 DNA MER2_type 773 1008 -1410 912 199 74 98 chr12 34008295 34008621 -110273868 - MLT1A1 LTR MaLR -47 318 1 772 260 63 27 chr12 34008702 34008953 -110273536 + MIR SINE MIR 2 259 -3 2025 106 11 7 chr12 34009555 34009861 -110272628 - AluSg1 SINE Alu 0 307 1 281 24 49 0 chr12 34009873 34009914 -110272575 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 35 0 0 22 chr12 34009981 34010009 -110272480 + AT_rich Low_complexity Low_complexity 1 29 -16 8190 25 0 0 chr12 34010009 34011424 -110271065 - L1PA3 LINE L1 -3 6152 4737 35 0 0 22 chr12 34011424 34011441 -110271048 + AT_rich Low_complexity Low_complexity 29 45 0 2422 50 0 7 chr12 34012931 34013230 -110269259 + AluY SINE Alu 4 300 -11 1305 119 0 0 chr12 34013230 34013406 -110269083 + AluSg/x SINE Alu 134 309 -3 975 165 11 48 chr12 34013406 34013594 -110268895 - Tigger1 DNA MER2_type -2237 181 1 246 224 143 31 chr12 34013594 34013678 -110268811 + MER106B DNA MER1_type 962 1056 -3 1852 164 0 34 chr12 34014112 34014435 -110268054 + AluJo SINE Alu 1 312 0 2345 97 7 0 chr12 34014471 34014781 -110267708 - AluSp SINE Alu -1 312 1 295 141 31 0 chr12 34015528 34015592 -110266897 + GA-rich Low_complexity Low_complexity 1 66 0 1801 141 0 0 chr12 34015756 34016018 -110266471 - AluSx SINE Alu -11 301 40 8111 24 2 0 chr12 34016223 34017537 -110264952 + L1PA3 LINE L1 4871 6184 0 1459 167 130 0 chr12 34017650 34017896 -110264593 - AluSx SINE Alu -34 278 1 1063 239 70 78 chr12 34018243 34018616 -110263873 + L2 LINE L2 339 708 -2606 501 62 0 0 chr12 34018632 34018697 -110263792 + (TTTA)n Simple_repeat Simple_repeat 2 66 0 814 219 0 0 chr12 34018697 34018843 -110263646 - FRAM SINE Alu -30 146 1 4604 252 80 25 chr12 34018911 34019823 -110262666 + L2 LINE L2 1299 2324 -990 2167 124 0 3 chr12 34019823 34020129 -110262360 - AluSx SINE Alu -7 305 1 4604 252 80 25 chr12 34020129 34020674 -110261815 + L2 LINE L2 2324 2837 -477 1076 168 53 18 chr12 34020675 34020901 -110261588 + L1ME1 LINE L1 4760 4993 -1153 2596 193 64 58 chr12 34022612 34022659 -110259830 + L1ME1 LINE L1 5240 5285 -881 2302 113 3 0 chr12 34022659 34022970 -110259519 + AluSx SINE Alu 1 312 0 2596 193 64 58 chr12 34022970 34023171 -110259318 + L1ME1 LINE L1 5285 5483 -683 2348 100 10 3 chr12 34023171 34023481 -110259008 + AluSq SINE Alu 1 312 -1 2596 193 64 58 chr12 34023481 34024101 -110258388 + L1ME1 LINE L1 5483 6110 -56 2064 130 35 0 chr12 34024101 34024385 -110258104 + AluSx SINE Alu 1 294 -18 332 232 21 32 chr12 34024662 34024757 -110257732 + MIR SINE MIR 168 261 -1 3342 124 112 26 chr12 34025045 34025553 -110256936 + Tigger1 DNA MER2_type 125 773 -1645 2209 119 3 0 chr12 34025553 34025855 -110256634 - AluSx SINE Alu -7 305 3 3342 124 112 26 chr12 34025855 34026114 -110256375 + Tigger1 DNA MER2_type 773 1008 -1410 787 194 108 89 chr12 34026102 34026452 -110256037 - MLT1A1 LTR MaLR -22 406 1 * 778 260 63 27 chr12 34026533 34026784 -110255705 + MIR SINE MIR 2 259 -3 2021 106 11 7 chr12 34027385 34027691 -110254798 - AluSg1 SINE Alu 0 307 1 281 24 49 0 chr12 34027703 34027744 -110254745 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 35 0 0 22 chr12 34027811 34027839 -110254650 + AT_rich Low_complexity Low_complexity 1 29 -16 7659 23 0 0 chr12 34027839 34029253 -110253236 - L1PA3 LINE L1 -3 6152 4737 35 0 0 22 chr12 34029253 34029270 -110253219 + AT_rich Low_complexity Low_complexity 29 45 0 929 211 17 0 chr12 34030601 34030781 -110251708 + MER5A DNA MER1_type 2 184 -5 352 181 14 28 chr12 34031292 34031364 -110251125 + AluJ/FRAM SINE Alu 220 290 -12 21 0 0 0 chr12 34033027 34033048 -110249441 + AT_rich Low_complexity Low_complexity 1 21 0 2497 55 0 16 chr12 34033116 34033423 -110249066 - AluY SINE Alu -8 303 2 6261 187 63 65 chr12 34033683 34033849 -110248640 + L1MC4a LINE L1 5940 6105 -1703 2092 135 3 0 chr12 34033849 34034145 -110248344 - AluSx SINE Alu -15 297 1 6261 187 63 65 chr12 34034145 34035393 -110247096 + L1MC4a LINE L1 6105 7353 -455 2080 133 0 9 chr12 34035393 34035708 -110246781 + AluSx SINE Alu 1 312 0 6261 187 63 65 chr12 34035708 34036151 -110246338 + L1MC4a LINE L1 7353 7795 -13 2043 125 7 0 chr12 34036369 34036670 -110245819 + AluSx SINE Alu 1 303 0 237 108 0 0 chr12 34036847 34036884 -110245605 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 464 242 61 61 chr12 34038869 34039034 -110243455 - L2 LINE L2 -1 3312 3148 687 201 134 0 chr12 34039067 34039246 -110243243 + MER3 DNA MER1_type 2 204 -5 217 224 179 0 chr12 34039287 34039354 -110243135 - L2 LINE L2 -247 3066 2988 1915 117 52 36 chr12 34039971 34040279 -110242210 + AluSq SINE Alu 1 313 0 870 211 119 18 chr12 34040582 34040809 -110241680 + MIR SINE MIR 13 262 0 370 257 93 84 chr12 34040809 34041064 -110241425 + MIR SINE MIR 16 251 -11 400 273 15 0 chr12 34042283 34042415 -110240074 - L1ME LINE L1 -344 5818 5685 239 259 37 46 chr12 34042427 34042461 -110240028 - MER5C DNA MER1_type -1 323 290 2270 117 0 0 chr12 34042461 34042768 -110239721 - AluSx SINE Alu -5 307 1 239 259 37 46 chr12 34042768 34042841 -110239648 - MER5C DNA MER1_type -34 290 217 1753 184 42 84 chr12 34042845 34043368 -110239121 + L1ME1 LINE L1 5601 6101 -65 412 206 50 50 chr12 34043292 34043433 -110239056 + L1MA10 LINE L1 6185 6325 -9 * 301 243 97 97 chr12 34043439 34043665 -110238824 - MER5C DNA MER1_type -97 227 2 490 266 21 75 chr12 34043697 34043800 -110238689 - MER5B DNA MER1_type 0 178 88 2345 201 58 30 chr12 34043800 34044366 -110238123 - MER119 DNA MER1_type -1 582 1 490 266 21 75 chr12 34044366 34044450 -110238039 - MER5B DNA MER1_type -90 88 1 647 261 31 38 chr12 34044514 34044724 -110237765 - L1ME LINE L1 -588 5576 5367 1992 149 10 3 chr12 34044724 34045025 -110237464 - AluJb SINE Alu -9 303 1 647 261 31 38 chr12 34045025 34045075 -110237414 - L1ME LINE L1 -797 5367 5318 1850 148 129 38 chr12 34045241 34045660 -110236829 - LTR32 LTR ERVL 0 471 15 461 278 66 31 chr12 34045660 34045980 -110236509 - L1ME LINE L1 -907 5239 4909 1994 160 0 0 chr12 34046181 34046493 -110235996 + AluJb SINE Alu 1 312 0 539 208 119 86 chr12 34048958 34049016 -110233473 + MLT1J LTR MaLR 231 286 -225 5458 46 6 1 chr12 34049016 34049673 -110232816 + PABL_A LTR ERV1 1 660 0 539 208 119 86 chr12 34049673 34049883 -110232606 + MLT1J LTR MaLR 286 508 -3 216 111 0 0 chr12 34050738 34050774 -110231715 + (TA)n Simple_repeat Simple_repeat 2 37 0 2335 91 3 0 chr12 34050870 34051167 -110231322 - AluSp SINE Alu -14 299 2 2128 117 41 0 chr12 34051783 34052074 -110230415 + AluSx SINE Alu 1 303 -9 9160 159 26 58 chr12 34052164 34053982 -110228507 - L1MA9 LINE L1 -14 6534 4660 713 144 59 0 chr12 34053982 34054100 -110228389 - FRAM SINE Alu -11 165 41 9160 159 26 58 chr12 34054100 34054166 -110228323 - L1MA9 LINE L1 -1888 4660 4593 2196 88 3 3 chr12 34054166 34054492 -110227997 - AluSp SINE Alu 0 326 1 9160 159 26 58 chr12 34054492 34055562 -110226927 - L1MA9 LINE L1 -1955 4593 3543 4566 124 28 7 chr12 34055563 34056310 -110226179 - Tigger1 DNA MER2_type 0 2418 1656 3786 139 40 53 chr12 34056307 34056637 -110225852 - Tigger1 DNA MER2_type -1464 954 621 * 2206 102 7 16 chr12 34056637 34056942 -110225547 - AluSc SINE Alu -7 302 1 3786 139 40 53 chr12 34056942 34057386 -110225103 - Tigger1 DNA MER2_type -1797 621 190 351 78 116 0 chr12 34057391 34057520 -110224969 + (TA)n Simple_repeat Simple_repeat 2 145 0 1140 113 41 10 chr12 34057520 34057714 -110224775 - Tigger1 DNA MER2_type -2218 200 1 3936 236 52 24 chr12 34057714 34059094 -110223395 - L1MA9 LINE L1 -2839 3543 2106 2382 87 0 0 chr12 34059094 34059393 -110223096 + AluSx SINE Alu 2 300 -12 3936 236 52 24 chr12 34059393 34059530 -110222959 - L1MA9 LINE L1 -4276 2106 1974 207 271 0 0 chr12 34059671 34059719 -110222770 + GA-rich Low_complexity Low_complexity 6 53 0 29 28 0 0 chr12 34060004 34060040 -110222449 + AT_rich Low_complexity Low_complexity 1 36 0 1663 89 0 9 chr12 34060145 34060359 -110222130 + AluSg/x SINE Alu 84 295 -17 2245 102 3 0 chr12 34060854 34061147 -110221342 + AluSx SINE Alu 1 294 -18 286 132 0 0 chr12 34061161 34061214 -110221275 + Alu SINE Alu 247 299 -2 710 192 96 6 chr12 34061219 34061386 -110221103 - L1PA16 LINE L1 -22 6144 5963 2401 91 0 0 chr12 34061393 34061700 -110220789 - AluSg SINE Alu -3 307 1 267 178 4 110 chr12 34061852 34061959 -110220530 - MER110A LTR ERV1 -309 167 80 557 322 0 23 chr12 34062013 34062190 -110220299 - MIR3 SINE MIR -33 175 3 228 105 53 0 chr12 34062674 34062712 -110219777 + MER3 DNA MER1_type 47 86 -123 * 442 133 60 0 chr12 34062680 34062763 -110219726 - MER3 DNA MER1_type -7 202 115 319 325 30 6 chr12 34063091 34063260 -110219229 - MLT1J2 LTR MaLR -276 174 2 913 291 51 10 chr12 34063456 34063752 -110218737 + MLT1I LTR MaLR 100 407 -2 2398 69 3 0 chr12 34064507 34064797 -110217692 + AluSg SINE Alu 1 291 -19 2166 163 68 5 chr12 34065006 34065430 -110217059 - LTR32 LTR ERVL -6 465 15 282 123 0 70 chr12 34065431 34065488 -110217001 - LTR32 LTR ERVL -404 67 15 2259 83 30 7 chr12 34065527 34065827 -110216662 + AluSg SINE Alu 1 307 -3 1738 163 12 38 chr12 34065892 34066212 -110216277 + AluJo SINE Alu 1 312 0 2266 128 0 0 chr12 34066509 34066821 -110215668 + AluSx SINE Alu 1 312 0 2191 102 0 0 chr12 34067659 34067954 -110214535 - AluSx SINE Alu -17 295 1 500 249 109 36 chr12 34068064 34068257 -110214232 + HAL1 LINE L1 2 208 -2299 2142 130 7 0 chr12 34069083 34069383 -110213106 - AluSq SINE Alu -11 302 1 310 157 20 0 chr12 34071280 34071382 -110211107 + (TA)n Simple_repeat Simple_repeat 1 104 0 2221 111 0 0 chr12 34071762 34072059 -110210430 - AluSx SINE Alu -15 297 1 2286 185 29 32 chr12 34072122 34072678 -110209811 + L1ME2 LINE L1 5602 6155 -9 2617 217 27 22 chr12 34072732 34073401 -110209088 + L1MB7 LINE L1 5513 6184 0 2122 126 0 3 chr12 34073474 34073775 -110208714 + AluSx SINE Alu 1 300 -12 240 296 74 25 chr12 34073892 34073973 -110208516 - L2 LINE L2 -52 3220 3136 1072 168 0 0 chr12 34074569 34074736 -110207753 - FRAM SINE Alu -10 166 1 2074 92 13 16 chr12 34075742 34076046 -110206443 + AluSx SINE Alu 1 303 -9 414 261 99 0 chr12 34076256 34076367 -110206122 + L2 LINE L2 3191 3312 -1 306 0 0 0 chr12 34077101 34077135 -110205354 + (TG)n Simple_repeat Simple_repeat 2 35 0 2082 135 0 0 chr12 34077136 34077424 -110205065 - AluSx SINE Alu -24 288 1 23 33 0 0 chr12 34077427 34077457 -110205032 + AT_rich Low_complexity Low_complexity 1 30 0 443 277 161 28 chr12 34077694 34077943 -110204546 - MLT1I LTR MaLR -62 347 66 257 181 0 111 chr12 34078131 34078158 -110204331 + MIR3 SINE MIR 133 161 -47 743 166 251 0 chr12 34078158 34078333 -110204156 - MER20 DNA MER1_type 0 219 1 257 181 0 111 chr12 34078333 34078377 -110204112 + MIR3 SINE MIR 161 196 -12 938 93 0 47 chr12 34079180 34079309 -110203180 + FLAM_C SINE Alu 1 123 -10 1026 90 0 8 chr12 34079497 34079631 -110202858 + FLAM_C SINE Alu 1 133 0 2113 97 31 3 chr12 34080094 34080384 -110202105 - AluSq SINE Alu -15 298 1 693 280 43 27 chr12 34080965 34081034 -110201455 - MIR SINE MIR -1 261 195 231 36 0 0 chr12 34081034 34081062 -110201427 + (CA)n Simple_repeat Simple_repeat 2 29 0 693 280 43 27 chr12 34081062 34081249 -110201240 - MIR SINE MIR -67 195 1 2263 109 0 7 chr12 34081314 34081616 -110200873 + AluSx SINE Alu 1 300 -12 298 247 14 0 chr12 34082047 34082120 -110200369 - L1ME4a LINE L1 -94 6027 5954 355 276 80 25 chr12 34082120 34082283 -110200206 - MIR SINE MIR -5 257 86 1067 154 36 72 chr12 34082474 34082634 -110199855 - MER20 DNA MER1_type 0 219 67 2127 115 0 0 chr12 34082634 34082979 -110199510 + AluSx SINE Alu 1 345 0 1067 154 36 72 chr12 34082979 34083038 -110199451 - MER20 DNA MER1_type -152 67 7 1252 102 6 0 chr12 34083386 34083552 -110198937 - AluSc SINE Alu -12 297 131 189 0 0 0 chr12 34083552 34083573 -110198916 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 2390 36 0 4 chr12 34083573 34083853 -110198636 - AluY SINE Alu -32 279 1 653 170 0 0 chr12 34085018 34085118 -110197371 + AluJb SINE Alu 207 306 -6 524 221 41 0 chr12 34085440 34085562 -110196927 + L1ME4a LINE L1 5786 5912 -209 350 232 116 36 chr12 34085588 34085726 -110196763 + L1ME4a LINE L1 5967 6115 -6 1861 157 0 13 chr12 34086086 34086385 -110196104 - AluJo SINE Alu -17 295 1 21 0 0 0 chr12 34086387 34086408 -110196081 + AT_rich Low_complexity Low_complexity 1 21 0 367 268 58 16 chr12 34086462 34086635 -110195854 - MIR SINE MIR -1 261 81 346 333 23 38 chr12 34087232 34087364 -110195125 - L2 LINE L2 -6 3266 3137 404 280 72 53 chr12 34088935 34089142 -110193347 - MIR SINE MIR -2 260 50 206 269 26 39 chr12 34089145 34089223 -110193266 - MIR SINE MIR -154 108 32 2255 100 3 0 chr12 34089915 34090206 -110192283 + AluSx SINE Alu 1 292 -20 354 266 65 57 chr12 34090255 34090379 -110192110 - L2 LINE L2 -3 3269 3145 248 267 107 0 chr12 34090579 34090654 -110191835 - MIR SINE MIR 0 262 180 356 149 11 42 chr12 34090667 34090738 -110191751 - AluJb SINE Alu -167 135 68 360 61 36 0 chr12 34090740 34090800 -110191689 + Alu SINE Alu 1 51 -251 669 261 37 58 chr12 34091417 34091584 -110190905 + Charlie8 DNA MER1_type 1 166 -175 2333 71 0 0 chr12 34091584 34091894 -110190595 + AluY SINE Alu 1 310 0 669 261 37 58 chr12 34091894 34091964 -110190525 + Charlie8 DNA MER1_type 166 236 -105 1794 171 7 10 chr12 34091972 34092277 -110190212 - AluJb SINE Alu -8 304 1 2301 97 0 23 chr12 34092819 34093127 -110189362 + AluY SINE Alu 1 301 -10 237 108 0 0 chr12 34093305 34093342 -110189147 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 456 242 61 61 chr12 34095327 34095492 -110186997 - L2 LINE L2 -1 3312 3148 772 201 134 0 chr12 34095525 34095704 -110186785 + MER3 DNA MER1_type 2 204 -5 223 224 179 0 chr12 34095745 34095812 -110186677 - L2 LINE L2 -247 3066 2988 1905 117 52 36 chr12 34096429 34096737 -110185752 + AluSq SINE Alu 1 313 0 877 207 119 18 chr12 34097040 34097267 -110185222 + MIR SINE MIR 13 262 0 346 251 111 85 chr12 34097323 34097522 -110184967 + MIR SINE MIR 48 251 -11 442 250 28 123 chr12 34098592 34098876 -110183613 - L1ME3A LINE L1 -229 5941 5685 2070 115 0 0 chr12 34098922 34099200 -110183289 - AluSx SINE Alu -5 307 30 245 143 48 0 chr12 34099746 34099788 -110182701 + MER3 DNA MER1_type 47 90 -119 * 484 175 62 0 chr12 34099752 34099849 -110182640 - MER3 DNA MER1_type -7 202 100 236 211 90 44 chr12 34099971 34100091 -110182398 - MLT1I LTR MaLR -7 422 318 372 323 42 6 chr12 34100163 34100330 -110182159 - MLT1J2 LTR MaLR -276 174 2 1023 291 51 10 chr12 34100526 34100822 -110181667 + MLT1I LTR MaLR 100 407 -2 2412 69 3 0 chr12 34101577 34101867 -110180622 + AluSg SINE Alu 1 291 -19 2353 163 68 5 chr12 34102076 34102500 -110179989 - LTR32 LTR ERVL -6 465 15 309 123 0 70 chr12 34102501 34102558 -110179931 - LTR32 LTR ERVL -404 67 15 2217 87 30 7 chr12 34102597 34102896 -110179593 + AluSg SINE Alu 1 306 -4 1735 159 12 38 chr12 34102961 34103281 -110179208 + AluJo SINE Alu 1 312 0 2179 119 0 0 chr12 34103577 34103871 -110178618 + AluSq SINE Alu 1 294 -19 298 271 42 80 chr12 34103912 34104174 -110178315 + LTR16B LTR ERVL 207 458 -6 2060 128 0 10 chr12 34104581 34104877 -110177612 - AluSx SINE Alu -19 293 1 669 156 14 92 chr12 34104878 34105019 -110177470 - FLAM_A SINE Alu 0 133 4 207 0 0 0 chr12 34105254 34105277 -110177212 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 376 269 0 28 chr12 34105746 34105854 -110176635 - LTR67 LTR ERVL -22 535 431 1836 159 0 3 chr12 34106019 34106309 -110176180 - AluJb SINE Alu -12 300 12 371 71 0 18 chr12 34106314 34106370 -110176119 + (TTCTCC)n Simple_repeat Simple_repeat 3 57 0 875 126 47 0 chr12 34106396 34106523 -110175966 - AluJb SINE Alu -179 133 1 364 190 51 13 chr12 34106525 34106604 -110175885 + MLT1L LTR MaLR 526 607 -8 1645 159 52 4 chr12 34106796 34106942 -110175547 - AluJo SINE Alu -28 284 146 279 0 0 0 chr12 34106942 34106973 -110175516 + (TG)n Simple_repeat Simple_repeat 2 32 0 1645 159 52 4 chr12 34106973 34107097 -110175392 - AluJo SINE Alu -166 146 1 262 278 8 30 chr12 34107147 34107280 -110175209 + L1MC4 LINE L1 7689 7818 -224 402 291 89 19 chr12 34107281 34107439 -110175050 - MER67C LTR ERV1 -541 169 1 265 286 42 17 chr12 34107471 34107590 -110174899 + L1MC4 LINE L1 7921 8042 0 592 228 13 80 chr12 34107599 34107823 -110174666 - LTR37B LTR ERV1 -3 465 257 1645 169 10 29 chr12 34107848 34108210 -110174279 + AluJb SINE Alu 3 358 0 2116 117 0 0 chr12 34108280 34108563 -110173926 + AluSx SINE Alu 1 283 -29 232 180 60 0 chr12 34108590 34108640 -110173849 - LTR37B LTR ERV1 -278 190 138 1226 182 88 25 chr12 34108642 34108946 -110173543 + Charlie1b DNA MER1_type 8 334 -2427 2228 106 0 0 chr12 34108946 34109239 -110173250 + AluSq SINE Alu 1 293 -20 1226 182 88 25 chr12 34109239 34109253 -110173236 + Charlie1b DNA MER1_type 334 346 -177 294 95 0 0 chr12 34109253 34109295 -110173194 + (TA)n Simple_repeat Simple_repeat 1 42 0 1797 154 58 0 chr12 34109307 34109599 -110172890 + AluSx SINE Alu 3 311 -1 243 172 17 35 chr12 34109678 34109736 -110172753 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 523 0 30 0 chr12 34109739 34109806 -110172683 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 1530 257 62 45 chr12 34110092 34110353 -110172136 + MER20B DNA MER1_type 1 256 -527 2580 65 0 0 chr12 34110353 34110660 -110171829 - AluSg1 SINE Alu -2 307 1 1530 257 62 45 chr12 34110660 34110897 -110171592 + MER20B DNA MER1_type 256 513 -270 5754 74 22 24 chr12 34110897 34110929 -110171560 - MER4E LTR ERV1 0 766 735 2466 58 3 0 chr12 34110929 34111221 -110171268 - AluY SINE Alu -18 293 1 5754 74 22 24 chr12 34111221 34111955 -110170534 - MER4E LTR ERV1 -31 735 1 1530 257 62 45 chr12 34111955 34112015 -110170474 + MER20B DNA MER1_type 513 570 -213 1002 179 131 84 chr12 34112031 34112178 -110170311 + MER2 DNA MER2_type 1 140 -205 2295 48 39 32 chr12 34112178 34112487 -110170002 + AluY SINE Alu 1 311 0 1435 101 101 0 chr12 34112489 34112698 -110169791 - MER30 DNA MER1_type 0 230 1 1002 179 131 84 chr12 34112698 34112844 -110169645 + MER2 DNA MER2_type 140 311 -34 30 0 0 0 chr12 34112859 34112889 -110169600 + AT_rich Low_complexity Low_complexity 1 30 0 2386 97 0 0 chr12 34113026 34113325 -110169164 + AluSx SINE Alu 1 299 -13 5236 112 17 50 chr12 34113374 34113695 -110168794 - MER4E LTR ERV1 0 779 449 2133 126 3 3 chr12 34113695 34114005 -110168484 + AluSg SINE Alu 1 310 0 5236 112 17 50 chr12 34114005 34114488 -110168001 - MER4E LTR ERV1 -330 449 1 1063 121 0 0 chr12 34114573 34114722 -110167767 - AluSg/x SINE Alu -1 309 161 316 265 198 43 chr12 34114950 34115274 -110167215 + L1M4 LINE L1 4579 4952 -1194 1064 168 0 0 chr12 34115293 34115460 -110167029 - FRAM SINE Alu -10 166 1 2074 92 13 16 chr12 34116466 34116770 -110165719 + AluSx SINE Alu 1 303 -9 414 261 99 0 chr12 34116980 34117091 -110165398 + L2 LINE L2 3191 3312 -1 450 0 0 0 chr12 34117825 34117875 -110164614 + (TG)n Simple_repeat Simple_repeat 2 51 0 2082 135 0 0 chr12 34117876 34118164 -110164325 - AluSx SINE Alu -24 288 1 23 33 0 0 chr12 34118167 34118197 -110164292 + AT_rich Low_complexity Low_complexity 1 30 0 443 277 161 28 chr12 34118434 34118683 -110163806 - MLT1I LTR MaLR -62 347 66 257 181 0 111 chr12 34118871 34118898 -110163591 + MIR3 SINE MIR 133 161 -47 743 166 251 0 chr12 34118898 34119073 -110163416 - MER20 DNA MER1_type 0 219 1 257 181 0 111 chr12 34119073 34119117 -110163372 + MIR3 SINE MIR 161 196 -12 938 93 0 47 chr12 34119920 34120049 -110162440 + FLAM_C SINE Alu 1 123 -10 1026 90 0 8 chr12 34120237 34120371 -110162118 + FLAM_C SINE Alu 1 133 0 2113 97 31 3 chr12 34120834 34121124 -110161365 - AluSq SINE Alu -15 298 1 693 280 43 27 chr12 34121705 34121774 -110160715 - MIR SINE MIR -1 261 195 270 0 0 0 chr12 34121774 34121804 -110160685 + (CA)n Simple_repeat Simple_repeat 2 31 0 693 280 43 27 chr12 34121804 34121991 -110160498 - MIR SINE MIR -67 195 1 2263 109 0 7 chr12 34122056 34122358 -110160131 + AluSx SINE Alu 1 300 -12 298 247 14 0 chr12 34122789 34122862 -110159627 - L1ME4a LINE L1 -94 6027 5954 355 276 80 25 chr12 34122862 34123025 -110159464 - MIR SINE MIR -5 257 86 1067 154 36 72 chr12 34123216 34123376 -110159113 - MER20 DNA MER1_type 0 219 67 2127 115 0 0 chr12 34123376 34123706 -110158783 + AluSx SINE Alu 1 330 0 1067 154 36 72 chr12 34123706 34123765 -110158724 - MER20 DNA MER1_type -152 67 7 1252 102 6 0 chr12 34124111 34124277 -110158212 - AluSc SINE Alu -12 297 131 189 0 0 0 chr12 34124277 34124298 -110158191 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 2321 68 0 0 chr12 34124298 34124577 -110157912 - AluY SINE Alu -32 279 1 518 271 42 30 chr12 34124578 34124744 -110157745 - Charlie8 DNA MER1_type -2249 168 1 1748 166 6 32 chr12 34125319 34125633 -110156856 - AluJb SINE Alu -6 306 1 530 307 74 5 chr12 34125792 34126007 -110156482 + MLT1J LTR MaLR 6 235 -276 303 241 18 71 chr12 34126067 34126179 -110156310 + MLT1J LTR MaLR 328 433 -78 1582 166 76 0 chr12 34126184 34126461 -110156028 + AluJo SINE Alu 1 298 -14 1329 261 131 35 chr12 34126461 34126705 -110155784 - L2 LINE L2 -985 2329 2110 2033 105 10 49 chr12 34126705 34127011 -110155478 + AluSx SINE Alu 1 294 -18 2317 88 7 0 chr12 34127011 34127319 -110155170 + AluSx SINE Alu 1 312 0 1329 261 131 35 chr12 34127319 34127762 -110154727 - L2 LINE L2 -1203 2111 1575 3178 96 96 2 chr12 34127880 34128337 -110154152 - MER61D LTR ERV1 -1 500 1 1965 108 8 0 chr12 34128788 34129048 -110153441 + AluSc SINE Alu 26 287 -22 2976 89 13 17 chr12 34129048 34129519 -110152970 + MER4A LTR ERV1 128 664 0 1375 174 28 68 chr12 34129561 34129665 -110152824 + MER67C LTR ERV1 52 159 -551 2080 107 4 4 chr12 34129665 34129972 -110152517 - AluSg SINE Alu 0 307 1 1375 174 28 68 chr12 34129972 34130097 -110152392 + MER67C LTR ERV1 159 268 -442 4166 99 21 44 chr12 34130097 34130684 -110151805 - LTR9B LTR ERV1 0 644 72 2388 50 0 77 chr12 34130684 34131021 -110151468 + AluY SINE Alu 1 311 0 4166 99 21 44 chr12 34131021 34131092 -110151397 - LTR9B LTR ERV1 -572 72 1 1375 174 28 68 chr12 34131092 34131182 -110151307 + MER67C LTR ERV1 268 360 -350 1838 173 10 19 chr12 34131182 34131495 -110150994 + AluJo SINE Alu 1 310 -2 225 65 0 0 chr12 34131523 34131554 -110150935 + MER67C LTR ERV1 342 372 -338 3283 146 0 4 chr12 34131563 34132076 -110150413 + MER41B LTR ERV1 1 511 -124 1938 153 10 3 chr12 34132081 34132389 -110150100 - AluSx SINE Alu -1 311 2 218 245 137 20 chr12 34132555 34132657 -110149832 - L2 LINE L2 -3 3310 3197 2367 86 3 0 chr12 34132734 34133036 -110149453 + AluSx SINE Alu 1 303 -9 976 51 8 0 chr12 34133876 34134021 -110148468 + AluSg/x SINE Alu 167 312 0 2226 96 7 3 chr12 34134628 34134929 -110147560 + AluSc SINE Alu 1 302 -7 222 62 0 0 chr12 34135102 34135134 -110147355 + (CA)n Simple_repeat Simple_repeat 1 32 0 182 224 0 13 chr12 34135608 34135652 -110146837 + (TA)n Simple_repeat Simple_repeat 2 46 -30 1737 180 8 37 chr12 34135652 34136029 -110146460 - MER47A DNA MER2_type 0 366 1 182 224 0 13 chr12 34136029 34136060 -110146429 + (TA)n Simple_repeat Simple_repeat 46 76 0 274 366 139 28 chr12 34136158 34136374 -110146115 + MIR SINE MIR 23 262 0 2242 112 0 3 chr12 34136389 34136684 -110145805 + AluSx SINE Alu 1 294 -18 2046 149 0 0 chr12 34137099 34137401 -110145088 + AluSx SINE Alu 1 302 -10 1676 183 7 7 chr12 34138801 34139096 -110143393 + AluJb SINE Alu 14 308 -4 2147 124 3 0 chr12 34139096 34139393 -110143096 + AluSx SINE Alu 1 299 -13 376 130 39 0 chr12 34139393 34139470 -110143019 + G-rich Low_complexity Low_complexity 3 82 0 265 313 120 31 chr12 34139474 34139666 -110142823 - Charlie8 DNA MER1_type -2197 220 1 334 312 21 48 chr12 34139864 34140050 -110142439 - L3 LINE CR1 -72 1505 1325 2411 80 0 0 chr12 34140412 34140711 -110141778 + AluY SINE Alu 1 299 -12 2262 115 0 0 chr12 34140991 34141287 -110141202 - AluSx SINE Alu -16 296 1 735 241 141 11 chr12 34141443 34141713 -110140776 + L2 LINE L2 2423 2727 -587 2407 91 0 0 chr12 34142060 34142358 -110140131 - AluSg SINE Alu -12 298 1 574 283 74 82 chr12 34142358 34142750 -110139739 + L2 LINE L2 2922 3310 -3 23 0 0 0 chr12 34143208 34143231 -110139258 + AT_rich Low_complexity Low_complexity 1 23 0 2130 118 10 0 chr12 34143359 34143648 -110138841 + AluSx SINE Alu 1 292 -20 2282 57 46 0 chr12 34144003 34144285 -110138204 + AluY SINE Alu 1 295 -16 2012 130 27 0 chr12 34144823 34145116 -110137373 + AluSx SINE Alu 1 301 -11 925 233 0 0 chr12 34145116 34145292 -110137197 + AluJb SINE Alu 134 309 -3 2299 109 0 0 chr12 34145850 34146152 -110136337 + AluSx SINE Alu 1 302 -10 1080 268 45 53 chr12 34146431 34147187 -110135302 + L1MC/D LINE L1 4698 5437 -743 21 36 0 0 chr12 34147242 34147270 -110135219 + AT_rich Low_complexity Low_complexity 1 28 0 2220 120 0 17 chr12 34147280 34147581 -110134908 - AluSx SINE Alu -16 296 1 1917 151 3 20 chr12 34147989 34148294 -110134195 - AluJb SINE Alu -12 300 1 215 300 22 22 chr12 34148485 34148575 -110133914 + L2 LINE L2 2684 2773 -541 194 291 114 39 chr12 34149193 34149447 -110133042 + L2 LINE L2 2811 3083 -189 209 33 33 0 chr12 34149467 34149497 -110132992 + (TTA)n Simple_repeat Simple_repeat 2 32 0 409 274 149 19 chr12 34149510 34149718 -110132771 - MIR SINE MIR -8 254 20 196 288 17 0 chr12 34149812 34149871 -110132618 + L2 LINE L2 3213 3272 0 2306 84 3 3 chr12 34150162 34150461 -110132028 - AluSx SINE Alu -13 299 1 658 197 87 16 chr12 34150669 34150852 -110131637 + L2 LINE L2 2709 2904 -410 454 300 17 43 chr12 34150848 34151081 -110131408 + L2 LINE L2 3032 3258 -55 * 2264 60 0 122 chr12 34151537 34151889 -110130600 - AluY SINE Alu -2 309 1 2080 135 0 3 chr12 34151938 34152241 -110130248 + AluSx SINE Alu 1 302 -10 205 243 0 0 chr12 34152297 34152334 -110130155 + polypyrimidine Low_complexity Low_complexity 2 38 0 1952 144 4 0 chr12 34153311 34153614 -110128875 - AluSx SINE Alu 0 306 3 339 287 90 36 chr12 34153684 34153851 -110128638 - MER5B DNA MER1_type -1 177 2 652 258 184 12 chr12 34154060 34154386 -110128103 + L2 LINE L2 2932 3313 0 1996 146 30 9 chr12 34154456 34154792 -110127697 + MER2 DNA MER2_type 1 343 -1 2316 64 4 4 chr12 34154825 34155165 -110127324 + AluY SINE Alu 1 340 0 2277 92 7 0 chr12 34155177 34155469 -110127020 + AluSp SINE Alu 1 294 -19 375 169 0 0 chr12 34155469 34155540 -110126949 + (TA)n Simple_repeat Simple_repeat 2 72 0 610 268 79 30 chr12 34155933 34156198 -110126291 - L3 LINE CR1 -3 1574 1297 893 176 0 34 chr12 34156342 34156490 -110125999 + AluJ SINE Alu 1 143 -169 969 184 25 0 chr12 34156523 34156686 -110125803 + AluJ SINE Alu 120 286 -26 300 119 0 0 chr12 34156708 34156767 -110125722 + (GA)n Simple_repeat Simple_repeat 2 60 0 207 170 0 0 chr12 34157774 34157821 -110124668 + A-rich Low_complexity Low_complexity 1 47 0 803 135 0 0 chr12 34158045 34158156 -110124333 + FLAM_C SINE Alu 1 111 -32 23 0 0 0 chr12 34158507 34158530 -110123959 + AT_rich Low_complexity Low_complexity 1 23 0 1724 155 11 18 chr12 34158538 34158822 -110123667 + AluJb SINE Alu 21 302 -10 1840 168 0 16 chr12 34158894 34159031 -110123458 + AluSx SINE Alu 1 139 -173 2186 102 7 10 chr12 34159031 34159325 -110123164 + AluSg SINE Alu 1 293 -17 1840 168 0 16 chr12 34159325 34159490 -110122999 + AluSx SINE Alu 139 298 -14 1160 178 28 112 chr12 34159494 34159815 -110122674 + AluJb SINE Alu 3 296 -6 291 259 64 43 chr12 34160152 34160341 -110122148 + MIR SINE MIR 50 241 -21 2359 102 3 0 chr12 34160895 34161199 -110121290 + AluSp SINE Alu 1 305 -8 21 89 0 0 chr12 34161312 34161368 -110121121 + AT_rich Low_complexity Low_complexity 1 56 0 1582 102 0 0 chr12 34161369 34161607 -110120882 + AluY SINE Alu 76 313 0 2164 36 0 0 chr12 34162201 34162452 -110120037 - L1PA3 LINE L1 -1 6154 5904 29 28 0 0 chr12 34163650 34163686 -110118803 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr12 34166483 34166506 -110115983 + GC_rich Low_complexity Low_complexity 1 23 0 374 278 136 0 chr12 34167199 34167361 -110115128 - MIR SINE MIR 0 262 79 234 0 0 0 chr12 34167777 34167803 -110114686 + (A)n Simple_repeat Simple_repeat 1 26 0 1997 128 45 3 chr12 34167813 34168102 -110114387 + AluSx SINE Alu 1 301 -11 1959 163 13 0 chr12 34168880 34169186 -110113303 - AluJo SINE Alu -2 310 1 1527 203 20 7 chr12 34169319 34169614 -110112875 + AluJo SINE Alu 1 299 -13 2374 99 3 6 chr12 34169614 34169927 -110112562 + AluSx SINE Alu 1 312 0 281 230 274 0 chr12 34169934 34170047 -110112442 + MIR SINE MIR 37 180 -82 252 334 53 75 chr12 34170141 34170320 -110112169 - L2 LINE L2 -252 3061 2880 1913 142 3 32 chr12 34170320 34170636 -110111853 + AluJo SINE Alu 2 308 -4 252 334 53 75 chr12 34170636 34170831 -110111658 - L2 LINE L2 -433 2880 2698 852 134 0 16 chr12 34170836 34170963 -110111526 + AluJb SINE Alu 1 125 -187 23 0 0 0 chr12 34170963 34170986 -110111503 + AT_rich Low_complexity Low_complexity 1 23 0 1001 296 89 75 chr12 34171019 34171343 -110111146 - L2 LINE L2 -660 2654 2336 2389 97 0 0 chr12 34171343 34171643 -110110846 - AluSx SINE Alu -12 300 1 1001 296 89 75 chr12 34171643 34172141 -110110348 - L2 LINE L2 -978 2336 1821 2223 115 0 0 chr12 34172154 34172441 -110110048 + AluSx SINE Alu 2 288 -24 8442 51 1 0 chr12 34172736 34173701 -110108788 - LTR5 LTR ERVK -3 966 1 3514 199 30 29 chr12 34173701 34173917 -110108572 - L1MB8 LINE L1 -152 6026 5812 2351 78 0 69 chr12 34173917 34174101 -110108388 - AluSp SINE Alu -3 310 115 315 0 0 0 chr12 34174101 34174136 -110108353 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2387 48 0 21 chr12 34174136 34174426 -110108063 - AluY SINE Alu -27 284 1 2351 78 0 69 chr12 34174426 34174573 -110107916 - AluSp SINE Alu -196 117 1 3514 199 30 29 chr12 34174573 34175212 -110107277 - L1MB8 LINE L1 -366 5812 5175 1889 126 66 0 chr12 34175212 34175498 -110106991 + AluSx SINE Alu 1 305 -7 3514 199 30 29 chr12 34175498 34175879 -110106610 - L1MB8 LINE L1 -1003 5175 4789 1269 194 29 98 chr12 34175879 34176076 -110106413 - MLT1A1 LTR MaLR -2 363 180 216 0 0 0 chr12 34176076 34176100 -110106389 + (A)n Simple_repeat Simple_repeat 1 24 0 1269 194 29 98 chr12 34176100 34176265 -110106224 - MLT1A1 LTR MaLR -185 180 5 3514 199 30 29 chr12 34176265 34176343 -110106146 - L1MB8 LINE L1 -1389 4789 4713 2489 102 4 0 chr12 34176461 34177136 -110105353 + AluSx SINE Alu 1 310 -2 379 324 56 17 chr12 34177287 34177466 -110105023 + MIR SINE MIR 37 222 -40 228 67 0 0 chr12 34177829 34177859 -110104630 + (TG)n Simple_repeat Simple_repeat 1 30 0 507 42 70 0 chr12 34178577 34178648 -110103841 - AluY SINE Alu -22 289 214 308 211 120 38 chr12 34178649 34178782 -110103707 - L1ME4a LINE L1 -177 5944 5801 1517 184 54 4 chr12 34178863 34179141 -110103348 + AluJb SINE Alu 1 292 -20 2570 75 67 20 chr12 34179388 34179746 -110102743 - THE1C LTR MaLR 0 375 1 463 265 30 8 chr12 34180215 34180347 -110102142 + MIR SINE MIR 110 244 -18 2215 60 32 3 chr12 34180579 34180863 -110101626 + AluY SINE Alu 1 292 -19 2007 156 3 13 chr12 34181660 34182003 -110100486 - AluJb SINE Alu 0 312 1 21 0 0 0 chr12 34182008 34182029 -110100460 + AT_rich Low_complexity Low_complexity 1 21 0 1913 161 3 3 chr12 34182312 34182603 -110099886 + AluJb SINE Alu 1 291 -21 468 0 0 0 chr12 34182630 34182682 -110099807 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 365 267 12 0 chr12 34182738 34182824 -110099665 - MIR SINE MIR -105 157 71 413 262 129 6 chr12 34182955 34183110 -110099379 + MIR SINE MIR 20 192 -63 231 330 0 10 chr12 34183258 34183358 -110099131 - MIR SINE MIR -1 261 163 2148 125 3 0 chr12 34184743 34185040 -110097449 - AluSq SINE Alu -15 298 1 453 141 0 0 chr12 34185338 34185402 -110097087 + AluS SINE Alu 3 66 -246 1662 158 14 4 chr12 34185978 34186278 -110096211 + AluJo SINE Alu 1 303 0 2218 116 3 0 chr12 34186331 34186625 -110095864 + AluSg SINE Alu 1 295 -15 2178 121 3 0 chr12 34186625 34186923 -110095566 + AluSx SINE Alu 1 299 -13 2431 88 0 0 chr12 34187113 34187409 -110095080 + AluSx SINE Alu 1 296 -16 2422 76 10 0 chr12 34187414 34187716 -110094773 + AluY SINE Alu 2 306 -5 748 103 0 0 chr12 34187904 34188011 -110094478 + AluY SINE Alu 198 304 -7 1153 95 0 6 chr12 34188060 34188218 -110094271 + LTR17 LTR ERV1 170 326 -454 186 133 0 0 chr12 34188218 34188248 -110094241 + (A)n Simple_repeat Simple_repeat 1 30 0 1608 149 104 7 chr12 34189101 34189370 -110093119 - AluJb SINE Alu -15 297 3 581 184 159 12 chr12 34190627 34190790 -110091699 - MER20 DNA MER1_type 0 219 33 883 105 0 45 chr12 34191650 34191783 -110090706 + FLAM_C SINE Alu 1 127 -6 974 90 0 8 chr12 34191967 34192101 -110090388 + FLAM_C SINE Alu 1 133 0 2135 97 31 3 chr12 34192564 34192854 -110089635 - AluSq SINE Alu -15 298 1 617 271 45 29 chr12 34193435 34193504 -110088985 - MIR SINE MIR -1 261 195 270 0 0 0 chr12 34193504 34193534 -110088955 + (CA)n Simple_repeat Simple_repeat 2 31 0 617 271 45 29 chr12 34193534 34193708 -110088781 - MIR SINE MIR -67 195 14 2283 109 0 7 chr12 34193786 34194088 -110088401 + AluSx SINE Alu 1 300 -12 293 247 14 0 chr12 34194519 34194592 -110087897 - L1ME4a LINE L1 -94 6027 5954 310 276 80 25 chr12 34194592 34194755 -110087734 - MIR SINE MIR -5 257 86 1055 152 36 85 chr12 34194946 34195106 -110087383 - MER20 DNA MER1_type 0 219 53 2143 113 0 0 chr12 34195106 34195388 -110087101 + AluSx SINE Alu 1 282 -30 396 0 0 0 chr12 34195391 34195435 -110087054 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1055 152 36 85 chr12 34195435 34195494 -110086995 - MER20 DNA MER1_type -168 51 7 1259 102 6 0 chr12 34195837 34196003 -110086486 - AluSc SINE Alu -12 297 131 189 0 0 0 chr12 34196003 34196024 -110086465 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 2427 36 0 4 chr12 34196024 34196304 -110086185 - AluY SINE Alu -32 279 1 617 170 0 0 chr12 34197469 34197569 -110084920 + AluJb SINE Alu 207 306 -6 512 221 41 0 chr12 34197891 34198013 -110084476 + L1ME4a LINE L1 5786 5912 -209 337 232 116 36 chr12 34198039 34198177 -110084312 + L1ME4a LINE L1 5967 6115 -6 25 40 0 20 chr12 34198505 34198531 -110083958 + AT_rich Low_complexity Low_complexity 1 27 -22 1945 157 0 10 chr12 34198531 34198837 -110083652 - AluJo SINE Alu -9 303 1 25 40 0 20 chr12 34198837 34198860 -110083629 + AT_rich Low_complexity Low_complexity 27 49 0 311 304 54 7 chr12 34198914 34199062 -110083427 - MIR SINE MIR -1 261 107 304 333 23 38 chr12 34199682 34199814 -110082675 - L2 LINE L2 -6 3266 3137 404 267 71 53 chr12 34201385 34201610 -110080879 - MIR SINE MIR -2 260 32 2278 100 3 0 chr12 34202303 34202594 -110079895 + AluSx SINE Alu 1 292 -20 316 266 65 57 chr12 34202643 34202767 -110079722 - L2 LINE L2 -3 3269 3145 231 267 107 0 chr12 34202967 34203042 -110079447 - MIR SINE MIR 0 262 180 655 153 21 90 chr12 34203061 34203128 -110079361 - AluJb SINE Alu -177 135 82 2492 80 0 6 chr12 34203128 34203440 -110079049 + AluSq SINE Alu 1 310 -3 655 153 21 90 chr12 34203440 34203516 -110078973 - AluJb SINE Alu -230 82 2 335 213 40 0 chr12 34203699 34203774 -110078715 + MSTD-int LTR MaLR 1658 1735 0 1123 192 113 73 chr12 34203774 34204155 -110078334 + MSTD LTR MaLR 1 396 0 556 305 0 38 chr12 34204266 34204479 -110078010 + MIR SINE MIR 45 249 -13 26 0 0 0 chr12 34204489 34204515 -110077974 + AT_rich Low_complexity Low_complexity 1 26 0 612 202 0 0 chr12 34204753 34204877 -110077612 + AluSg/x SINE Alu 168 291 -19 510 274 26 63 chr12 34204980 34205170 -110077319 + MER34 LTR ERV1 359 541 -1 498 241 0 0 chr12 34205474 34205582 -110076907 + FLAM_A SINE Alu 15 122 -20 843 246 12 12 chr12 34205738 34205990 -110076499 - AluY SINE Alu -11 300 49 676 200 0 0 chr12 34206124 34206249 -110076240 + AluSp/q SINE Alu 164 288 -25 1730 171 0 17 chr12 34206255 34206554 -110075935 + AluSx SINE Alu 1 294 -18 504 174 0 54 chr12 34206554 34206721 -110075768 + GA-rich Low_complexity Low_complexity 2 159 0 347 243 18 29 chr12 34206737 34207010 -110075479 + GA-rich Low_complexity Low_complexity 1 270 0 823 273 0 38 chr12 34207034 34207323 -110075166 + AluSx SINE Alu 14 291 -21 977 168 119 10 chr12 34207432 34207634 -110074855 + Tigger3(Golem) DNA MER2_type 2804 3027 -2 292 181 12 60 chr12 34207657 34207740 -110074749 - LTR37B LTR ERV1 -246 222 144 389 272 56 16 chr12 34207759 34207884 -110074605 + MER58A DNA MER1_type 14 143 0 2529 164 2 2 chr12 34208047 34208468 -110074021 + LTR3 LTR ERVK 12 432 0 1505 166 11 7 chr12 34208570 34208853 -110073636 + MER41A LTR ERV1 1 284 -270 1175 214 25 4 chr12 34208956 34209194 -110073295 + AluJb SINE Alu 50 292 -20 2354 101 67 20 chr12 34209440 34209798 -110072691 - THE1C LTR MaLR 0 375 1 1070 98 0 0 chr12 34210247 34210390 -110072099 - AluSg/x SINE Alu 0 312 170 26 0 0 0 chr12 34210628 34210654 -110071835 + AT_rich Low_complexity Low_complexity 1 26 0 584 295 0 31 chr12 34210664 34210887 -110071602 - MIR SINE MIR -13 249 35 1020 215 105 68 chr12 34210986 34211368 -110071121 - MSTD LTR MaLR 0 396 1 1270 243 71 6 chr12 34211374 34211740 -110070749 - MSTD-int LTR MaLR -5 1730 1341 1941 126 4 0 chr12 34211840 34212111 -110070378 - AluSx SINE Alu -40 272 1 1528 213 3 7 chr12 34212111 34212410 -110070079 - AluJb SINE Alu 0 312 14 828 120 0 8 chr12 34213024 34213141 -110069348 - AluSq/x SINE Alu -195 118 3 280 192 14 82 chr12 34213145 34213218 -110069271 + AluJo SINE Alu 68 135 -167 231 323 65 57 chr12 34213504 34213628 -110068861 + L2 LINE L2 3145 3269 -3 1862 143 3 7 chr12 34213677 34213970 -110068519 - AluSx SINE Alu -20 292 1 29 28 0 0 chr12 34215270 34215306 -110067183 + AT_rich Low_complexity Low_complexity 1 36 0 1673 136 11 11 chr12 34216115 34216395 -110066094 - AluSc SINE Alu -29 280 1 423 60 0 45 chr12 34217144 34217211 -110065278 - AluJ/FLAM SINE Alu -238 74 11 733 144 0 53 chr12 34217411 34217543 -110064946 - FLAM_C SINE Alu -6 127 3 195 268 0 36 chr12 34218352 34218408 -110064081 - L3 LINE CR1 -12 1565 1512 228 67 0 0 chr12 34219042 34219072 -110063417 + (TG)n Simple_repeat Simple_repeat 1 30 0 507 42 70 0 chr12 34219790 34219861 -110062628 - AluY SINE Alu -22 289 214 1222 241 24 21 chr12 34220701 34220905 -110061584 - MLT1A1 LTR MaLR -73 292 85 2293 146 37 0 chr12 34220905 34221255 -110061234 - THE1B LTR MaLR -1 363 1 1222 241 24 21 chr12 34221255 34221341 -110061148 - MLT1A1 LTR MaLR -280 85 1 260 143 63 32 chr12 34221691 34221754 -110060735 - MER91B DNA MER1_type -125 65 1 299 293 76 58 chr12 34222872 34223097 -110059392 - MIR SINE MIR -2 260 32 34 0 0 0 chr12 34224431 34224465 -110058024 + AT_rich Low_complexity Low_complexity 1 34 0 446 224 93 25 chr12 34225923 34226084 -110056405 - L2 LINE L2 -423 2891 2720 1980 110 3 10 chr12 34226305 34226604 -110055885 + AluSx SINE Alu 1 297 -15 1052 244 7 7 chr12 34227399 34227678 -110054811 - AluSx SINE Alu -14 298 20 1054 236 98 11 chr12 34227688 34227964 -110054525 - AluJo SINE Alu 0 302 3 694 268 37 30 chr12 34228355 34228624 -110053865 - L1PA16 LINE L1 -2 6164 5894 198 0 0 0 chr12 34229134 34229156 -110053333 + (TTATA)n Simple_repeat Simple_repeat 4 25 0 1429 123 0 0 chr12 34229156 34229359 -110053130 - AluY SINE Alu -30 281 79 21 89 0 0 chr12 34229363 34229419 -110053070 + AT_rich Low_complexity Low_complexity 1 56 0 2051 133 3 0 chr12 34229532 34229834 -110052655 - AluSp SINE Alu -8 305 3 1612 188 3 0 chr12 34230229 34230522 -110051967 - AluSx SINE Alu -12 300 7 1370 226 3 10 chr12 34230527 34230828 -110051661 - AluJb SINE Alu 0 312 14 374 278 136 0 chr12 34231919 34232081 -110050408 - MIR SINE MIR 0 262 79 234 0 0 0 chr12 34232497 34232523 -110049966 + (A)n Simple_repeat Simple_repeat 1 26 0 1894 149 45 0 chr12 34232533 34232821 -110049668 + AluSx SINE Alu 1 301 -11 643 223 30 82 chr12 34233469 34233588 -110048901 + AluJb SINE Alu 11 135 -177 1510 177 14 0 chr12 34233588 34233865 -110048624 + AluY SINE Alu 1 281 -30 293 0 0 26 chr12 34233870 34233908 -110048581 + (TATAA)n Simple_repeat Simple_repeat 4 40 0 643 223 30 82 chr12 34233908 34234015 -110048474 + AluJb SINE Alu 139 231 -81 189 0 0 0 chr12 34234098 34234119 -110048370 + (CA)n Simple_repeat Simple_repeat 2 22 0 1680 171 0 0 chr12 34234151 34234431 -110048058 + AluSq SINE Alu 7 286 -27 314 23 23 0 chr12 34234431 34234474 -110048015 + (TA)n Simple_repeat Simple_repeat 2 45 0 1061 230 3 25 chr12 34234477 34234760 -110047729 + AluJb SINE Alu 5 281 -31 505 0 31 0 chr12 34234762 34234827 -110047662 + (TA)n Simple_repeat Simple_repeat 2 68 0 771 228 29 58 chr12 34234869 34235145 -110047344 + LTR29 LTR ERV1 137 404 -218 519 188 55 31 chr12 34235196 34235324 -110047165 + AluSq SINE Alu 23 153 -160 386 323 71 34 chr12 34235435 34235757 -110046732 - L2 LINE L2 -1145 2169 1836 1892 160 0 0 chr12 34235785 34236072 -110046417 + AluSx SINE Alu 2 288 -24 8380 54 1 0 chr12 34236367 34237332 -110045157 - LTR5 LTR ERVK -3 966 1 318 258 0 52 chr12 34237343 34237362 -110045127 - L1MC2 LINE L1 -320 6024 6006 821 203 6 28 chr12 34237362 34237544 -110044945 - L1MB8 LINE L1 -170 6008 5831 1265 109 0 22 chr12 34237555 34237738 -110044751 - AluSp SINE Alu -8 305 127 530 204 28 42 chr12 34237935 34238077 -110044412 - L1MB8 LINE L1 -687 5475 5336 400 204 11 0 chr12 34238081 34238169 -110044320 + AluSg/x SINE Alu 207 295 -14 198 136 0 0 chr12 34238276 34238320 -110044169 + (TA)n Simple_repeat Simple_repeat 1 44 0 2489 80 0 0 chr12 34238938 34239239 -110043250 - AluY SINE Alu -10 301 1 22 0 0 0 chr12 34239463 34239485 -110043004 + AT_rich Low_complexity Low_complexity 1 22 0 1501 151 98 4 chr12 34239542 34239807 -110042682 - MLT1B LTR MaLR -77 313 24 937 171 77 6 chr12 34240147 34240317 -110042172 + THE1B LTR MaLR 182 363 -1 909 224 6 6 chr12 34240341 34240520 -110041969 + MLT1A1 LTR MaLR 115 293 -72 2019 150 0 0 chr12 34241176 34241470 -110041019 - AluSx SINE Alu -17 295 2 1707 194 0 10 chr12 34242053 34242352 -110040137 - AluJb SINE Alu -16 296 1 597 314 36 4 chr12 34242993 34243241 -110039248 + AluJo SINE Alu 14 269 -43 372 222 0 0 chr12 34243345 34243417 -110039072 - AluJ/F(R)AM SINE Alu -97 205 134 945 184 0 0 chr12 34243417 34243575 -110038914 - AluSg/x SINE Alu -21 291 134 1840 168 0 16 chr12 34243575 34243740 -110038749 - AluSx SINE Alu -14 298 139 2186 102 7 10 chr12 34243740 34244034 -110038455 - AluSg SINE Alu -17 293 1 1840 168 0 16 chr12 34244034 34244171 -110038318 - AluSx SINE Alu -173 139 1 1628 166 11 18 chr12 34244243 34244527 -110037962 - AluJb SINE Alu -10 302 21 23 0 0 0 chr12 34244535 34244558 -110037931 + AT_rich Low_complexity Low_complexity 1 23 0 803 135 0 0 chr12 34244909 34245020 -110037469 - FLAM_C SINE Alu -32 111 1 207 170 0 0 chr12 34245244 34245291 -110037198 + T-rich Low_complexity Low_complexity 1 47 0 300 119 0 0 chr12 34246298 34246357 -110036132 + (TC)n Simple_repeat Simple_repeat 2 60 0 969 184 25 0 chr12 34246379 34246542 -110035947 - AluJ SINE Alu -26 286 120 863 182 0 34 chr12 34246575 34246723 -110035766 - AluJ SINE Alu -169 143 1 506 304 78 19 chr12 34246876 34247133 -110035356 + L3 LINE CR1 1303 1574 -3 306 179 0 0 chr12 34247540 34247596 -110034893 - L1MC4 LINE L1 -1339 6703 6648 1679 161 7 3 chr12 34247599 34247891 -110034598 - AluSp SINE Alu -20 293 1 446 0 19 0 chr12 34247903 34247957 -110034532 + (TTATA)n Simple_repeat Simple_repeat 4 58 0 1376 167 4 4 chr12 34247957 34248202 -110034287 - AluY SINE Alu -26 285 41 596 214 0 0 chr12 34248303 34248415 -110034074 + AluJb SINE Alu 198 309 -3 2284 113 0 0 chr12 34248973 34249275 -110033214 + AluSx SINE Alu 1 302 -10 1080 268 45 53 chr12 34249554 34250310 -110032179 + L1MC/D LINE L1 4698 5437 -743 21 36 0 0 chr12 34250365 34250393 -110032096 + AT_rich Low_complexity Low_complexity 1 28 0 2220 120 0 17 chr12 34250403 34250704 -110031785 - AluSx SINE Alu -16 296 1 1854 157 3 20 chr12 34251112 34251417 -110031072 - AluJb SINE Alu -12 300 1 205 213 16 33 chr12 34251622 34251683 -110030806 + L2 LINE L2 2699 2758 -556 2079 134 0 0 chr12 34252680 34252963 -110029526 - AluSx SINE Alu -29 283 1 1368 132 7 162 chr12 34253103 34253511 -110028978 + L1M2 LINE L1 5141 5610 -633 1651 151 74 7 chr12 34253511 34253795 -110028694 + AluSx SINE Alu 1 303 -9 960 253 34 3 chr12 34253795 34254088 -110028401 + AluSx SINE Alu 1 302 0 1368 132 7 162 chr12 34254088 34254103 -110028386 + L1M2 LINE L1 5484 5500 -743 1211 136 60 5 chr12 34304644 34304843 -109977646 - LTR12 LTR ERV1 -126 588 379 309 276 10 0 chr12 34304846 34304944 -109977545 - LTR30 LTR ERV1 -80 642 544 5352 143 168 26 chr12 34304944 34306068 -109976421 - pTR5 LTR ERV1 -413 2025 742 308 206 144 0 chr12 34306073 34306170 -109976319 + L1ME3A LINE L1 5821 5931 -239 650 140 309 6 chr12 34306218 34306396 -109976093 + MER21A LTR ERV1 1 232 -699 1758 170 3 0 chr12 34306720 34307002 -109975487 - AluJo SINE Alu -16 296 14 2496 65 0 0 chr12 34307135 34307443 -109975046 - AluY SINE Alu -3 308 1 2368 67 0 13 chr12 34307567 34307865 -109974624 - AluY SINE Alu -17 294 1 940 173 31 0 chr12 34308120 34308282 -109974207 + L1MB3 LINE L1 6017 6183 0 186 326 11 54 chr12 34308548 34308640 -109973849 - L2 LINE L2 -229 3043 2956 22 0 0 0 chr12 34309534 34309556 -109972933 + AT_rich Low_complexity Low_complexity 1 22 0 1349 95 0 0 chr12 34310428 34310607 -109971882 + AluY SINE Alu 131 309 -2 1585 213 123 103 chr12 34310781 34311065 -109971424 - Charlie7 DNA MER1_type -319 2293 2016 2121 122 0 29 chr12 34311065 34311377 -109971112 - AluSx SINE Alu -9 303 1 1585 213 123 103 chr12 34311377 34311388 -109971101 - Charlie7 DNA MER1_type -596 2016 2007 856 139 0 36 chr12 34311388 34311525 -109970964 - FLAM_C SINE Alu -1 132 1 1585 213 123 103 chr12 34311525 34311890 -109970599 - Charlie7 DNA MER1_type -605 2007 1611 2380 93 0 3 chr12 34311890 34312200 -109970289 - AluSp SINE Alu -4 309 1 1585 213 123 103 chr12 34312200 34312336 -109970153 - Charlie7 DNA MER1_type -1001 1611 1479 1582 114 4 0 chr12 34312535 34312763 -109969726 - AluSp SINE Alu -11 302 74 1933 150 25 0 chr12 34313136 34313422 -109969067 - AluJb SINE Alu -19 293 1 1276 191 65 14 chr12 34314589 34314867 -109967622 + AluJb SINE Alu 1 292 -20 199 385 37 9 chr12 34315606 34315715 -109966774 - L2 LINE L2 -20 3252 3141 823 168 58 7 chr12 34316017 34316154 -109966335 + AluJ SINE Alu 2 145 -167 1202 135 0 0 chr12 34316349 34316519 -109965970 + AluJ SINE Alu 129 298 -14 386 342 87 63 chr12 34317222 34317810 -109964679 + L2 LINE L2 2375 2976 -338 2174 122 0 0 chr12 34318572 34318868 -109963621 - AluSx SINE Alu -16 296 1 326 180 0 0 chr12 34319144 34319194 -109963295 - 5S rRNA rRNA -71 50 1 2182 58 47 14 chr12 34319431 34319709 -109962780 + AluY SINE Alu 1 287 -24 509 323 63 5 chr12 34320180 34320369 -109962120 - L3 LINE CR1 -9 1568 1369 467 274 151 27 chr12 34320660 34320952 -109961537 - L1ME4a LINE L1 -206 5915 5588 230 299 15 0 chr12 34321413 34321480 -109961009 - L1ME4a LINE L1 -599 5585 5518 2232 94 7 7 chr12 34322393 34322690 -109959799 - AluSg SINE Alu -13 297 1 285 283 40 0 chr12 34322690 34322789 -109959700 + L1ME LINE L1 5465 5567 -597 1276 269 162 47 chr12 34322864 34323728 -109958761 - L2 LINE L2 -1 3312 2303 1885 156 3 10 chr12 34324663 34324964 -109957525 + AluSx SINE Alu 1 299 -13 662 226 39 96 chr12 34325050 34325280 -109957209 - MER20 DNA MER1_type -1 218 2 2843 119 28 18 chr12 34325325 34325761 -109956728 - MER83 LTR ERV1 -8 440 1 1708 172 10 113 chr12 34326255 34326662 -109955827 + MLT1A1 LTR MaLR 1 365 0 7460 37 0 147 chr12 34328588 34330235 -109952254 + SVA Other Other 1 1383 -3 2522 82 0 6 chr12 34331263 34331578 -109950911 + AluSq SINE Alu 1 313 0 1387 143 13 26 chr12 34331728 34331959 -109950530 + AluJo SINE Alu 71 298 -14 22 0 0 0 chr12 34332076 34332098 -109950391 + AT_rich Low_complexity Low_complexity 1 22 0 1525 183 17 33 chr12 34332098 34332398 -109950091 + AluJb SINE Alu 1 295 -17 382 193 67 67 chr12 34333184 34333319 -109949170 + MER58C DNA MER1_type 81 215 0 1306 198 37 43 chr12 34334398 34334726 -109947763 - L1MD3 LINE L1 -256 7739 7414 2516 75 3 0 chr12 34335207 34335514 -109946975 - AluSc SINE Alu -1 308 1 1702 213 119 30 chr12 34335562 34336101 -109946388 - L1ME1 LINE L1 -2 6164 5578 1651 126 65 0 chr12 34336288 34336565 -109945924 - MER44D DNA MER2_type 0 609 45 233 227 103 21 chr12 34336630 34336727 -109945762 + MIR SINE MIR 68 172 -90 602 237 41 67 chr12 34337381 34337575 -109944914 + MER5A DNA MER1_type 1 189 0 2338 101 3 0 chr12 34337682 34337990 -109944499 - AluSx SINE Alu -3 309 1 2328 78 51 0 chr12 34341177 34341473 -109941016 - AluY SINE Alu 0 311 1 959 302 89 37 chr12 34341495 34342151 -109940338 + L2 LINE L2 2435 3145 -127 1883 170 6 6 chr12 34342151 34342463 -109940026 - AluSx SINE Alu 0 312 1 959 302 89 37 chr12 34342463 34342599 -109939890 + L2 LINE L2 3145 3272 0 21 0 0 0 chr12 34342658 34342679 -109939810 + AT_rich Low_complexity Low_complexity 1 21 0 2099 130 0 13 chr12 34343037 34343352 -109939137 + AluY SINE Alu 1 311 0 2271 96 3 20 chr12 34343553 34343854 -109938635 + AluSp SINE Alu 1 296 -17 22 0 0 0 chr12 34344244 34344266 -109938223 + AT_rich Low_complexity Low_complexity 1 22 0 2234 103 3 0 chr12 34344819 34345110 -109937379 - AluSp SINE Alu -1 312 21 2187 87 7 0 chr12 34345643 34345929 -109936560 - AluSg SINE Alu -22 288 1 2330 250 85 48 chr12 34347168 34347855 -109934634 - MER21B LTR ERV1 -66 865 40 2408 75 0 3 chr12 34347900 34348192 -109934297 - AluY SINE Alu -20 291 1 1969 128 7 14 chr12 34348409 34348706 -109933783 + AluSx SINE Alu 1 295 -17 1885 146 7 7 chr12 34348714 34349009 -109933480 + AluJb SINE Alu 1 295 -17 821 202 22 34 chr12 34349141 34349319 -109933170 - MER5B DNA MER1_type -2 176 1 189 276 35 0 chr12 34349591 34349649 -109932840 - MIR SINE MIR -150 112 53 1019 204 85 0 chr12 34349698 34349899 -109932590 - MER58A DNA MER1_type -6 218 1 721 147 15 44 chr12 34350489 34350625 -109931864 - FLAM_A SINE Alu 0 133 2 1629 173 0 8 chr12 34351420 34351680 -109930809 + AluJo SINE Alu 1 258 -54 340 236 7 76 chr12 34351750 34351894 -109930595 + MIR SINE MIR 129 262 0 2181 108 7 0 chr12 34351983 34352270 -109930219 - AluSq SINE Alu -24 289 1 347 232 36 54 chr12 34353336 34353448 -109929041 + MER103 DNA DNA 8 117 -49 210 372 58 0 chr12 34354358 34354444 -109928045 + L2 LINE L2 3143 3233 -39 1955 143 7 10 chr12 34354660 34354960 -109927529 + AluJb SINE Alu 9 307 -5 427 278 52 63 chr12 34355622 34355813 -109926676 - MIR SINE MIR -27 235 47 2152 100 0 67 chr12 34356516 34356846 -109925643 - AluSx SINE Alu -4 308 1 2368 65 7 52 chr12 34357049 34357358 -109925131 - AluSp SINE Alu -18 295 1 1377 183 95 4 chr12 34358088 34358350 -109924139 + AluJo SINE Alu 2 287 -25 1769 273 89 27 chr12 34358726 34359753 -109922736 - L2 LINE L2 0 3313 2210 2556 57 3 0 chr12 34359834 34360134 -109922355 - AluY SINE Alu -10 301 1 1350 199 63 22 chr12 34360134 34360405 -109922084 - AluJo SINE Alu -30 282 1 1426 150 156 13 chr12 34360526 34360840 -109921649 - L1MB3 LINE L1 -3 6180 5822 1221 96 0 6 chr12 34360840 34360996 -109921493 + AluSq SINE Alu 2 156 -157 337 143 0 0 chr12 34360999 34361048 -109921441 - Alu SINE Alu -254 49 1 396 119 0 17 chr12 34361048 34361107 -109921382 - L1MB3 LINE L1 -445 5738 5681 2058 144 0 0 chr12 34361117 34361416 -109921073 - AluSx SINE Alu -12 300 2 27 73 0 0 chr12 34361471 34361526 -109920963 + AT_rich Low_complexity Low_complexity 1 55 0 2294 92 0 7 chr12 34362211 34362503 -109919986 - AluSc SINE Alu -19 290 1 1576 142 114 4 chr12 34362728 34363009 -109919480 - AluJb SINE Alu 0 312 1 288 236 22 56 chr12 34363035 34363124 -109919365 + MER2 DNA MER2_type 2 87 -258 1923 169 0 3 chr12 34363394 34363690 -109918799 - AluJb SINE Alu -17 295 1 1617 72 0 0 chr12 34364596 34364791 -109917698 + AluSc SINE Alu 113 307 -2 2027 132 17 0 chr12 34365245 34365533 -109916956 - AluSx SINE Alu -19 293 1 32 26 0 0 chr12 34365546 34365585 -109916904 + AT_rich Low_complexity Low_complexity 1 39 0 2380 97 0 10 chr12 34365862 34366171 -109916318 - AluSg SINE Alu -4 306 1 1023 125 0 7 chr12 34366458 34366610 -109915879 + AluSg/x SINE Alu 146 296 -13 2107 118 13 0 chr12 34366620 34366924 -109915565 + AluSq SINE Alu 1 308 -5 188 276 35 35 chr12 34367013 34367100 -109915389 - MIR SINE MIR 0 262 176 2027 112 25 0 chr12 34367427 34367746 -109914743 - AluSx SINE Alu 0 326 1 1055 130 25 45 chr12 34368152 34368352 -109914137 + MER20 DNA MER1_type 24 219 0 2438 80 0 0 chr12 34368838 34369137 -109913352 - AluSx SINE Alu -13 299 1 2521 72 3 0 chr12 34369926 34370230 -109912259 + AluSg SINE Alu 1 305 -5 227 300 55 45 chr12 34370762 34370872 -109911617 - MIR SINE MIR -129 133 23 2072 97 41 0 chr12 34370930 34371236 -109911253 - AluSc SINE Alu 0 317 1 369 0 0 0 chr12 34371313 34371354 -109911135 + (TA)n Simple_repeat Simple_repeat 2 42 0 1828 183 0 3 chr12 34371354 34371649 -109910840 - AluJo SINE Alu -18 294 1 2307 87 17 0 chr12 34371699 34371998 -109910491 - AluSx SINE Alu -8 304 1 2020 118 47 0 chr12 34372559 34372855 -109909634 - AluSx SINE Alu 0 312 3 2187 112 0 14 chr12 34372858 34373182 -109909307 - AluSq SINE Alu 0 313 1 384 308 5 76 chr12 34373247 34373432 -109909057 + MIR3 SINE MIR 29 200 -8 270 160 0 0 chr12 34373498 34373548 -109908941 + (TG)n Simple_repeat Simple_repeat 2 51 0 232 214 18 0 chr12 34373548 34373604 -109908885 + (TA)n Simple_repeat Simple_repeat 1 57 0 3057 121 111 44 chr12 34373787 34374030 -109908459 - MER51A LTR ERV1 0 634 409 1550 98 61 138 chr12 34374030 34374357 -109908132 + AluSg SINE Alu 1 302 -8 3057 121 111 44 chr12 34374357 34374707 -109907782 - MER51A LTR ERV1 -225 409 1 304 294 61 28 chr12 34374951 34375131 -109907358 + L1MC4a LINE L1 5180 5365 -781 1725 154 29 29 chr12 34375133 34375445 -109907044 + AluJb SINE Alu 1 312 0 2515 53 0 3 chr12 34375589 34375889 -109906600 - AluY SINE Alu -12 299 1 991 279 56 24 chr12 34375906 34376332 -109906157 + L1MC4a LINE L1 5445 5884 -1924 939 152 87 159 chr12 34376526 34376699 -109905790 + MLT1C LTR MaLR 1 185 -282 2581 58 0 10 chr12 34376699 34377010 -109905479 + AluY SINE Alu 1 308 -3 939 152 87 159 chr12 34377010 34377050 -109905439 + MLT1C LTR MaLR 185 226 -241 2127 112 7 7 chr12 34377050 34377335 -109905154 + AluSq SINE Alu 1 285 -28 438 20 0 0 chr12 34377335 34377386 -109905103 + (CA)n Simple_repeat Simple_repeat 2 52 0 939 152 87 159 chr12 34377386 34377517 -109904972 + MLT1C LTR MaLR 224 341 -126 1237 222 135 49 chr12 34377537 34378027 -109904462 - LTR10B LTR ERV1 -3 544 13 785 152 8 8 chr12 34378047 34378179 -109904310 + MLT1C LTR MaLR 336 467 0 1831 136 11 0 chr12 34378226 34378498 -109903991 - AluSx SINE Alu -37 275 1 1973 115 21 11 chr12 34379087 34379214 -109903275 + AluSx SINE Alu 2 126 -186 2276 90 0 34 chr12 34379214 34379536 -109902953 + AluSp SINE Alu 1 311 -2 1973 115 21 11 chr12 34379536 34379695 -109902794 + AluSx SINE Alu 126 291 -21 22 0 0 0 chr12 34379695 34379717 -109902772 + AT_rich Low_complexity Low_complexity 1 22 0 2073 109 46 0 chr12 34380786 34381071 -109901418 + AluSx SINE Alu 2 299 -13 288 237 316 7 chr12 34381097 34381249 -109901240 + MIR SINE MIR 58 256 -6 2467 78 0 0 chr12 34381373 34381668 -109900821 + AluY SINE Alu 1 295 -16 195 42 0 0 chr12 34381668 34381692 -109900797 + (TA)n Simple_repeat Simple_repeat 2 25 0 1828 207 66 28 chr12 34381934 34382334 -109900155 + MLT1D LTR MaLR 19 441 -64 2378 84 0 0 chr12 34382334 34382630 -109899859 - AluY SINE Alu -15 296 1 1828 207 66 28 chr12 34382630 34382698 -109899791 + MLT1D LTR MaLR 441 505 0 2121 120 0 0 chr12 34382919 34383210 -109899279 - AluSx SINE Alu -19 293 3 2307 104 0 0 chr12 34383328 34383637 -109898852 - AluY SINE Alu -2 309 1 2346 74 10 16 chr12 34383835 34384146 -109898343 - AluSq SINE Alu -4 309 1 2522 79 0 0 chr12 34384147 34384451 -109898038 - AluSp SINE Alu -9 304 1 192 233 23 0 chr12 34384714 34384757 -109897732 - L2 LINE L2 0 3313 3270 280 224 52 0 chr12 34384809 34384867 -109897622 - MER91 DNA MER1_type -78 62 2 1712 173 0 40 chr12 34384961 34385284 -109897205 - AluJb SINE Alu 0 312 3 1094 74 7 0 chr12 34385285 34385420 -109897069 - AluSp SINE Alu -177 136 1 2070 107 0 36 chr12 34385557 34385865 -109896624 + AluSx SINE Alu 1 297 -15 207 0 0 0 chr12 34386047 34386070 -109896419 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 710 123 113 0 chr12 34386072 34386178 -109896311 - FLAM_C SINE Alu -15 118 1 207 0 0 0 chr12 34386190 34386213 -109896276 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2259 60 0 0 chr12 34386407 34386713 -109895776 + AluY SINE Alu 15 320 0 192 40 0 0 chr12 34388308 34388333 -109894156 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 1212 165 9 24 chr12 34389109 34389321 -109893168 + AluJb SINE Alu 47 255 -57 825 114 78 78 chr12 34389642 34389809 -109892680 + FRAM SINE Alu 1 161 -15 421 285 116 35 chr12 34389890 34389932 -109892557 - MER5A DNA MER1_type 0 189 152 2273 95 3 0 chr12 34389932 34390226 -109892263 - AluSp SINE Alu -18 295 1 421 285 116 35 chr12 34390226 34390355 -109892134 - MER5A DNA MER1_type -37 152 4 216 213 16 49 chr12 34390824 34390885 -109891604 - L3 LINE CR1 -19 1558 1500 1703 151 55 17 chr12 34391021 34391312 -109891177 - AluJo SINE Alu -10 302 1 2346 116 0 0 chr12 34391327 34391637 -109890852 - AluSg SINE Alu 0 310 1 902 137 38 0 chr12 34391637 34391768 -109890721 - AluSq/x SINE Alu -176 136 1 757 191 64 49 chr12 34391805 34392009 -109890480 - L1MB7 LINE L1 -1 6183 5977 2006 148 88 96 chr12 34392148 34392269 -109890220 - L1MB7 LINE L1 -202 5982 5862 1988 117 42 11 chr12 34392269 34392552 -109889937 - AluSx SINE Alu -9 303 12 2006 148 88 96 chr12 34392552 34392736 -109889753 - L1MB7 LINE L1 -322 5862 5678 2397 61 10 0 chr12 34392736 34393030 -109889459 - AluY SINE Alu -14 297 1 2006 148 88 96 chr12 34393030 34393153 -109889336 - L1MB7 LINE L1 -506 5678 5555 2035 129 0 7 chr12 34393153 34393456 -109889033 - AluSx SINE Alu -11 301 1 2006 148 88 96 chr12 34393456 34393538 -109888951 - L1MB7 LINE L1 -629 5555 5474 642 159 88 23 chr12 34393803 34393839 -109888650 - L1MB5 LINE L1 -6 6168 6136 2422 83 13 0 chr12 34393839 34394140 -109888349 - AluSp SINE Alu -8 305 1 642 159 88 23 chr12 34394140 34394691 -109887798 - L1MB5 LINE L1 -38 6136 5372 888 121 0 57 chr12 34394733 34394874 -109887615 - FLAM_C SINE Alu 0 133 1 1920 210 80 68 chr12 34394874 34395238 -109887251 - L1MB5 LINE L1 -941 5205 4847 1919 144 0 23 chr12 34395238 34395543 -109886946 - AluSx SINE Alu -14 298 1 1920 210 80 68 chr12 34395543 34395711 -109886778 - L1MB5 LINE L1 -1299 4847 4660 1818 146 4 4 chr12 34395711 34396011 -109886478 - AluSx SINE Alu 0 307 8 1920 210 80 68 chr12 34396011 34396138 -109886351 - L1MB5 LINE L1 -1486 4660 4536 455 98 37 73 chr12 34396224 34396306 -109886183 - MER41B LTR ERV1 -91 544 466 818 144 53 48 chr12 34396320 34396508 -109885981 - L1M4c LINE L1 -4850 1534 1346 961 194 12 6 chr12 34396710 34396880 -109885609 + FAM SINE Alu 1 171 -4 1980 113 33 0 chr12 34396986 34397281 -109885208 - AluSp SINE Alu 0 305 2 269 0 0 0 chr12 34397378 34397413 -109885076 + L1MD3 LINE L1 7950 7984 -11 793 264 98 62 chr12 34398010 34398366 -109884123 + Charlie8 DNA MER1_type 29 397 -2020 516 276 96 15 chr12 34398369 34398568 -109883921 + MIR SINE MIR 48 262 0 2377 140 44 31 chr12 34398783 34399044 -109883445 - MLT1B LTR MaLR 0 390 121 2337 68 0 20 chr12 34399044 34399336 -109883153 - AluSc SINE Alu -23 286 1 2377 140 44 31 chr12 34399336 34399459 -109883030 - MLT1B LTR MaLR -269 121 1 229 210 99 127 chr12 34399690 34399871 -109882618 + HAL1b LINE L1 309 484 -864 27 0 0 0 chr12 34399939 34399966 -109882523 + AT_rich Low_complexity Low_complexity 1 27 0 207 0 0 0 chr12 34400119 34400142 -109882347 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 592 279 209 21 chr12 34400660 34401173 -109881316 - L1ME3 LINE L1 -300 5862 5254 1522 170 20 98 chr12 34401314 34401427 -109881062 - L1MB8 LINE L1 0 6178 6058 1926 157 0 3 chr12 34401427 34401732 -109880757 - AluJb SINE Alu -8 304 1 1522 170 20 98 chr12 34401732 34401882 -109880607 - L1MB8 LINE L1 -120 6058 5956 2212 95 0 7 chr12 34401882 34402177 -109880312 - AluSg SINE Alu -17 293 1 1522 170 20 98 chr12 34402177 34402318 -109880171 - L1MB8 LINE L1 -222 5956 5805 1857 148 0 7 chr12 34403281 34403564 -109878925 + AluJb SINE Alu 1 281 -31 299 291 33 88 chr12 34403624 34404047 -109878442 + HAL1b LINE L1 8 407 -941 1629 157 6 63 chr12 34404047 34404163 -109878326 + AluJo SINE Alu 1 122 -190 390 21 0 0 chr12 34404163 34404210 -109878279 + (CA)n Simple_repeat Simple_repeat 2 48 0 1629 157 6 63 chr12 34404210 34404412 -109878077 + AluJo SINE Alu 122 301 -11 896 119 30 0 chr12 34404428 34404562 -109877927 - AluSp/q SINE Alu -19 294 157 1837 123 8 4 chr12 34405538 34405799 -109876690 - AluSx SINE Alu -10 302 41 227 154 15 0 chr12 34405977 34406042 -109876447 + (TG)n Simple_repeat Simple_repeat 2 67 0 254 188 72 14 chr12 34406043 34406181 -109876308 + (TTGG)n Simple_repeat Simple_repeat 3 148 0 * 408 169 16 60 chr12 34406086 34406269 -109876220 + (TTTG)n Simple_repeat Simple_repeat 4 178 0 534 197 16 31 chr12 34406378 34406505 -109875984 - AluY SINE Alu -185 126 2 632 131 35 162 chr12 34406723 34406830 -109875659 + L1MB4 LINE L1 5862 5934 -246 1868 128 24 35 chr12 34406830 34407119 -109875370 + AluSq SINE Alu 1 286 -27 632 131 35 162 chr12 34407119 34407209 -109875280 + L1MB4 LINE L1 5934 6034 -146 2251 91 7 3 chr12 34407209 34407495 -109874994 + AluSg SINE Alu 1 287 -23 1980 100 0 36 chr12 34407499 34407780 -109874709 + AluSc SINE Alu 1 271 -38 1919 91 0 0 chr12 34408002 34408243 -109874246 + AluSg/x SINE Alu 69 309 -1 432 290 98 27 chr12 34409973 34410156 -109872333 + LTR33 LTR ERVL 12 207 -314 694 214 31 36 chr12 34410208 34410404 -109872085 + LTR33 LTR ERVL 327 521 0 880 197 25 102 chr12 34410632 34410678 -109871811 + L1MC4 LINE L1 7741 7789 -253 984 155 0 31 chr12 34410678 34410839 -109871650 + FRAM SINE Alu 5 160 -6 880 197 25 102 chr12 34410839 34411138 -109871351 + L1MC4 LINE L1 7789 8042 0 538 318 109 49 chr12 34411182 34411353 -109871136 + L1MC4a LINE L1 5307 5466 -655 1993 96 7 11 chr12 34411353 34411623 -109870866 + AluSx SINE Alu 37 305 -7 538 318 109 49 chr12 34411623 34411930 -109870559 + L1MC4a LINE L1 5466 5706 -415 2207 78 4 0 chr12 34411930 34412198 -109870291 - AluSx SINE Alu -18 294 26 538 318 109 49 chr12 34412198 34412266 -109870223 + L1MC4a LINE L1 5706 5768 -353 1674 177 11 4 chr12 34412269 34412546 -109869943 + AluJb SINE Alu 1 279 -33 2487 61 7 3 chr12 34412798 34413095 -109869394 + AluSp SINE Alu 1 298 -15 694 114 0 19 chr12 34413527 34413632 -109868857 - AluSg/x SINE Alu -9 301 199 235 53 0 0 chr12 34413733 34413771 -109868718 + AluJb SINE Alu 262 299 0 2397 87 0 3 chr12 34414353 34414652 -109867837 + AluSc SINE Alu 1 298 -11 252 89 89 0 chr12 34414652 34414753 -109867736 + (TA)n Simple_repeat Simple_repeat 1 110 0 2132 113 7 0 chr12 34415669 34415961 -109866528 - AluSx SINE Alu -17 295 2 244 273 0 0 chr12 34416492 34416569 -109865920 + CT-rich Low_complexity Low_complexity 1 77 0 410 307 121 29 chr12 34417788 34418068 -109864421 - L1MC/D LINE L1 -2002 5806 5501 885 180 47 73 chr12 34418078 34418311 -109864178 - L1MD2 LINE L1 -15 6344 6118 2545 57 0 0 chr12 34418919 34419217 -109863272 + AluSx SINE Alu 1 298 -14 2193 103 23 10 chr12 34419652 34419953 -109862536 - AluSx SINE Alu -7 305 1 37 0 0 0 chr12 34420020 34420057 -109862432 + AT_rich Low_complexity Low_complexity 1 37 0 741 50 89 0 chr12 34420057 34420158 -109862331 - HY1 scRNA scRNA -2 110 1 23 0 0 0 chr12 34420708 34420731 -109861758 + AT_rich Low_complexity Low_complexity 1 23 0 1805 172 0 13 chr12 34422319 34422633 -109859856 + AluJb SINE Alu 1 310 -2 311 28 0 0 chr12 34422968 34423004 -109859485 - U2 snRNA snRNA -152 36 1 1447 124 4 26 chr12 34425068 34425301 -109857188 + AluJo SINE Alu 85 312 0 31 0 0 0 chr12 34425547 34425578 -109856911 + AT_rich Low_complexity Low_complexity 1 31 0 1951 226 78 115 chr12 34425756 34426268 -109856221 + L2 LINE L2 1951 2480 -833 1833 139 46 4 chr12 34426268 34426549 -109855940 + AluJo SINE Alu 6 298 -14 1951 226 78 115 chr12 34426549 34427112 -109855377 + L2 LINE L2 2480 3069 -244 1164 139 0 0 chr12 34427164 34427329 -109855160 + FRAM SINE Alu 11 175 -1 516 237 36 104 chr12 34427340 34427589 -109854900 + L2 LINE L2 3082 3313 0 21 36 0 0 chr12 34427740 34427768 -109854721 + AT_rich Low_complexity Low_complexity 1 28 0 654 228 31 0 chr12 34428349 34428476 -109854013 + FLAM_A SINE Alu 1 131 -2 2623 47 0 0 chr12 34428921 34429222 -109853267 - AluY SINE Alu -10 301 1 23 33 0 0 chr12 34429321 34429351 -109853138 + AT_rich Low_complexity Low_complexity 1 30 0 1516 162 13 45 chr12 34429354 34429662 -109852827 + AluJb SINE Alu 1 298 -14 932 184 6 18 chr12 34429743 34429906 -109852583 - FRAM SINE Alu -4 162 2 320 214 36 12 chr12 34429950 34430034 -109852455 + L1ME LINE L1 5698 5783 -338 627 76 36 53 chr12 34430263 34430662 -109851827 + (TA)n Simple_repeat Simple_repeat 1 392 0 2035 144 0 0 chr12 34430662 34430946 -109851543 - AluSx SINE Alu -27 285 2 1717 193 7 0 chr12 34431459 34431754 -109850735 - AluJo SINE Alu -15 297 1 338 296 125 17 chr12 34432229 34432405 -109850084 - MIR SINE MIR -15 247 53 259 307 55 49 chr12 34432447 34432610 -109849879 + MIR3 SINE MIR 32 195 -13 603 249 83 6 chr12 34432931 34433100 -109849389 + MIR SINE MIR 48 229 -33 4114 193 107 21 chr12 34434025 34434819 -109847670 - MER21B LTR ERV1 -1 862 1 62 52 0 0 chr12 34435341 34435438 -109847051 + AT_rich Low_complexity Low_complexity 1 97 0 705 186 0 0 chr12 34435540 34435642 -109846847 + FLAM_A SINE Alu 12 113 -29 2303 86 13 0 chr12 34435919 34436221 -109846268 + AluSx SINE Alu 1 306 -6 243 0 0 0 chr12 34436354 34436381 -109846108 + (T)n Simple_repeat Simple_repeat 1 27 0 843 164 113 19 chr12 34436856 34437015 -109845474 + AluJb SINE Alu 137 310 -2 2322 87 3 0 chr12 34437568 34437866 -109844623 - AluSg SINE Alu -11 299 1 28 0 0 0 chr12 34437866 34437894 -109844595 + AT_rich Low_complexity Low_complexity 1 28 0 1846 156 24 0 chr12 34437995 34438290 -109844199 - AluSx SINE Alu -2 310 9 390 108 14 54 chr12 34438290 34438364 -109844125 - L1MC2 LINE L1 -374 5970 5900 496 151 0 0 chr12 34438364 34438437 -109844052 - FLAM_A SINE Alu -10 132 60 914 172 178 44 chr12 34438437 34438585 -109843904 + L1MC4 LINE L1 6929 7056 -986 333 68 0 0 chr12 34438585 34438629 -109843860 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 914 172 178 44 chr12 34438629 34438800 -109843689 + L1MC4 LINE L1 7056 7291 -751 2117 118 3 7 chr12 34438808 34439104 -109843385 - AluSx SINE Alu -17 295 1 2543 121 105 5 chr12 34439104 34439552 -109842937 - L1MC2 LINE L1 -425 5908 5416 5228 184 86 76 chr12 34439566 34440025 -109842464 - L1MC4 LINE L1 -2 8040 7587 2109 101 28 0 chr12 34440025 34440312 -109842177 - AluSg SINE Alu -15 295 1 5228 184 86 76 chr12 34440312 34440347 -109842142 - L1MC4 LINE L1 -455 7587 7554 2362 87 10 0 chr12 34440347 34440645 -109841844 - AluY SINE Alu -10 301 1 5228 184 86 76 chr12 34440645 34440946 -109841543 - L1MC4 LINE L1 -488 7554 7257 2060 122 7 0 chr12 34440946 34441242 -109841247 + AluSx SINE Alu 1 298 -14 5228 184 86 76 chr12 34441242 34441999 -109840490 - L1MC4 LINE L1 -785 7257 6471 2033 162 43 28 chr12 34442000 34442544 -109839945 - MLT2A2 LTR ERVL 0 554 1 557 238 191 47 chr12 34442567 34442805 -109839684 - L1MC4a LINE L1 -1370 6438 6147 183 42 0 0 chr12 34442805 34442829 -109839660 + (TG)n Simple_repeat Simple_repeat 2 25 0 557 238 191 47 chr12 34442829 34442889 -109839600 - L1MC4a LINE L1 -1661 6147 6097 1704 152 0 18 chr12 34442929 34443212 -109839277 - AluJo SINE Alu 0 312 35 2462 73 0 13 chr12 34443915 34444230 -109838259 - AluY SINE Alu 0 311 1 620 130 87 17 chr12 34444230 34444345 -109838144 - AluJo SINE Alu -176 136 14 246 133 0 0 chr12 34444447 34444492 -109837997 - Alu SINE Alu 0 302 258 696 186 8 16 chr12 34444492 34444621 -109837868 + AluJb SINE Alu 179 306 -6 2310 104 0 0 chr12 34444625 34444923 -109837566 + AluSc SINE Alu 1 298 -11 225 282 161 16 chr12 34444942 34445066 -109837423 - L2 LINE L2 -1107 2207 2066 822 153 0 22 chr12 34445093 34445230 -109837259 + AluJo SINE Alu 1 134 -178 1684 236 299 7 chr12 34445230 34446064 -109836425 - L2 LINE L2 -1262 2052 976 2076 118 3 45 chr12 34446087 34446401 -109836088 - AluSq SINE Alu -12 301 1 195 247 148 12 chr12 34446421 34446502 -109835987 + MIR SINE MIR 161 252 -10 371 267 57 80 chr12 34446506 34446682 -109835807 + MER5B DNA MER1_type 1 172 -6 284 214 366 0 chr12 34446882 34446994 -109835495 + MER5A DNA MER1_type 31 183 -6 2353 95 0 0 chr12 34447423 34447719 -109834770 - AluY SINE Alu -15 296 1 848 170 44 159 chr12 34447763 34448033 -109834456 - MER8 DNA MER2_type 0 239 1 1888 92 115 0 chr12 34448636 34448897 -109833592 - AluSg SINE Alu -19 291 1 955 90 8 0 chr12 34448925 34449047 -109833442 - AluSq/x SINE Alu -189 123 1 22 0 0 0 chr12 34450803 34450825 -109831664 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 34453182 34453204 -109829285 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr12 34453230 34453259 -109829230 + AT_rich Low_complexity Low_complexity 1 29 0 198 233 67 0 chr12 34454268 34454328 -109828161 + L2 LINE L2 3207 3270 -2 2197 117 0 0 chr12 34454940 34455231 -109827258 + AluSq SINE Alu 1 291 -22 185 0 40 0 chr12 34455240 34455265 -109827224 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 713 182 177 0 chr12 34455959 34456151 -109826338 - MIR SINE MIR -14 248 23 1030 135 153 0 chr12 34456152 34456322 -109826167 - AluJo SINE Alu -114 198 3 2164 126 37 50 chr12 34456466 34456772 -109825717 + THE1C LTR MaLR 1 305 -70 2281 92 0 0 chr12 34456772 34457089 -109825400 - AluY SINE Alu 0 317 1 2164 126 37 50 chr12 34457089 34457160 -109825329 + THE1C LTR MaLR 305 375 0 2029 127 0 56 chr12 34457215 34457539 -109824950 + AluSx SINE Alu 1 306 -6 401 186 106 35 chr12 34457646 34457759 -109824730 + MER5C DNA MER1_type 2 122 -202 260 212 152 0 chr12 34457788 34457854 -109824635 + MER5C DNA MER1_type 234 309 -15 2122 98 17 7 chr12 34457855 34458150 -109824339 - AluSq SINE Alu -15 298 1 1390 238 63 19 chr12 34458174 34458359 -109824130 + MER58D DNA MER1_type 5 180 -2240 2247 86 4 0 chr12 34458359 34458671 -109823818 - AluSg SINE Alu 0 313 1 1390 238 63 19 chr12 34458671 34458850 -109823639 + MER58D DNA MER1_type 180 386 0 2291 96 3 0 chr12 34459404 34459695 -109822794 - AluSc SINE Alu -17 292 1 1775 99 130 0 chr12 34460425 34460678 -109821811 + AluSx SINE Alu 5 290 -12 312 325 43 70 chr12 34461179 34461508 -109820981 + L2 LINE L2 2366 2685 -629 823 202 76 15 chr12 34461508 34461732 -109820757 + AluJo SINE Alu 101 336 0 240 278 162 73 chr12 34461749 34462139 -109820350 + L2 LINE L2 2725 3187 -85 2256 103 0 3 chr12 34462600 34462900 -109819589 + AluSg SINE Alu 1 299 -11 205 364 73 18 chr12 34463070 34463180 -109819309 + L2 LINE L2 2750 2865 -449 1877 137 0 45 chr12 34463401 34463575 -109818914 - AluJb SINE Alu -12 300 145 2205 101 7 10 chr12 34463575 34463871 -109818618 - AluSc SINE Alu -14 295 1 1877 137 0 45 chr12 34463871 34464010 -109818479 - AluJb SINE Alu -167 145 1 428 278 164 23 chr12 34464431 34464827 -109817662 + L1MEd LINE L1 675 1126 -4993 298 304 56 8 chr12 34464996 34465121 -109817368 + MIR SINE MIR 105 235 -27 769 318 132 68 chr12 34465599 34465719 -109816770 + L2 LINE L2 90 201 -3112 1966 98 58 0 chr12 34465719 34465995 -109816494 - AluSp SINE Alu -21 292 1 769 318 132 68 chr12 34465995 34467058 -109815431 + L2 LINE L2 201 1195 -2118 2305 100 0 3 chr12 34467058 34467358 -109815131 + AluSg SINE Alu 1 299 -11 2455 75 3 0 chr12 34467365 34467673 -109814816 + AluSp SINE Alu 1 309 -4 769 318 132 68 chr12 34467673 34468046 -109814443 + L2 LINE L2 1200 1548 -1765 2340 93 10 0 chr12 34468046 34468347 -109814142 - AluSq SINE Alu -9 304 1 769 318 132 68 chr12 34468347 34468634 -109813855 + L2 LINE L2 1548 3307 -6 2121 118 3 0 chr12 34468962 34469251 -109813238 + AluSx SINE Alu 23 312 0 1837 161 16 10 chr12 34469736 34470041 -109812448 + AluJo SINE Alu 1 307 -5 34 0 0 0 chr12 34471134 34471168 -109811321 + AT_rich Low_complexity Low_complexity 1 34 0 2177 107 3 3 chr12 34471617 34471906 -109810583 + AluSq SINE Alu 1 289 -24 2085 132 10 0 chr12 34472325 34472620 -109809869 + AluSx SINE Alu 1 298 -14 364 120 0 0 chr12 34473195 34473268 -109809221 - Alu SINE Alu 0 308 236 1018 141 0 7 chr12 34473268 34473417 -109809072 - AluSq/x SINE Alu -165 148 1 2052 64 131 0 chr12 34473547 34473814 -109808675 + AluSx SINE Alu 1 302 0 982 192 0 6 chr12 34473819 34473986 -109808503 + FRAM SINE Alu 1 166 0 230 410 20 0 chr12 34474405 34474505 -109807984 - L2 LINE L2 -19 3253 3152 2393 71 0 14 chr12 34474868 34475162 -109807327 - AluY SINE Alu -21 290 1 21 57 0 0 chr12 34475334 34475369 -109807120 + AT_rich Low_complexity Low_complexity 1 35 0 1445 197 99 38 chr12 34477005 34477370 -109805119 + MSTD LTR MaLR 1 387 -9 1784 182 115 3 chr12 34478122 34478513 -109803976 + MER74A LTR ERVL 1 435 -123 2380 185 90 8 chr12 34478718 34479249 -109803240 - L1MB7 LINE L1 0 6184 5610 8439 117 30 14 chr12 34479276 34480395 -109802094 - HSMAR2 DNA Mariner 0 1302 158 1677 155 19 62 chr12 34480395 34480717 -109801772 - AluJo SINE Alu -4 308 1 8439 117 30 14 chr12 34480717 34480878 -109801611 - HSMAR2 DNA Mariner -1144 158 1 1917 194 17 3 chr12 34481609 34481960 -109800529 - MER52A LTR ERV1 0 1755 1400 1456 198 23 0 chr12 34481930 34482273 -109800216 - MER52A LTR ERV1 -1099 656 247 * 352 219 0 0 chr12 34482268 34482341 -109800148 - MER52A LTR ERV1 -1678 77 5 * 1785 121 98 8 chr12 34482523 34482788 -109799701 - AluSx SINE Alu -23 289 1 368 279 109 20 chr12 34483833 34483980 -109798509 - MIR SINE MIR -75 187 28 1431 115 217 12 chr12 34484958 34485234 -109797255 + AluSx SINE Alu 1 302 0 2015 121 23 16 chr12 34486308 34486615 -109795874 + AluSx SINE Alu 1 309 -3 182 340 19 0 chr12 34486615 34486668 -109795821 + MER5A DNA MER1_type 68 121 -68 793 185 99 0 chr12 34486682 34486833 -109795656 - AluSg/x SINE Alu -12 298 133 26 50 0 0 chr12 34487912 34487952 -109794537 + AT_rich Low_complexity Low_complexity 1 40 0 351 271 51 33 chr12 34487988 34488140 -109794349 - MIR SINE MIR -66 142 11 272 284 0 0 chr12 34488235 34488302 -109794187 - MIR SINE MIR -7 255 189 2184 142 0 0 chr12 34488883 34489185 -109793304 + AluSx SINE Alu 1 302 -10 303 304 44 19 chr12 34489203 34489361 -109793128 + L1M4 LINE L1 77 238 -6304 490 194 47 0 chr12 34489547 34489676 -109792813 + L1M4 LINE L1 1423 1557 -5077 411 195 0 0 chr12 34489685 34489762 -109792727 + FLAM_A SINE Alu 53 129 -13 1081 230 17 34 chr12 34489769 34490115 -109792374 + L1M4 LINE L1 1513 1852 -4794 1664 157 66 11 chr12 34490135 34490421 -109792068 + AluJo SINE Alu 1 302 -10 2279 74 16 19 chr12 34490436 34490745 -109791744 + AluY SINE Alu 1 308 -3 259 314 55 24 chr12 34490958 34491248 -109791241 + L1M4 LINE L1 2311 2609 -4216 2039 111 3 30 chr12 34491997 34492295 -109790194 - AluJb SINE Alu -21 291 2 296 250 0 0 chr12 34492890 34492950 -109789539 + L2 LINE L2 3212 3271 -1 186 343 61 30 chr12 34493008 34493107 -109789382 + MIR SINE MIR 19 120 -88 264 170 0 0 chr12 34493514 34493567 -109788922 + A-rich Low_complexity Low_complexity 1 53 0 1991 112 3 7 chr12 34494276 34494562 -109787927 + AluSg SINE Alu 3 287 -23 2425 17 11 3 chr12 34494662 34494949 -109787540 - AluY SINE Alu -22 289 1 212 342 63 0 chr12 34495047 34495126 -109787363 - L2 LINE L2 0 3272 3189 37 0 0 0 chr12 34496031 34496068 -109786421 + AT_rich Low_complexity Low_complexity 1 37 0 840 167 79 3 chr12 34496068 34496285 -109786204 + AluJb SINE Alu 1 301 -11 388 252 8 16 chr12 34496292 34496419 -109786070 - L1MC5 LINE L1 -65 7896 7771 323 254 44 53 chr12 34496487 34496601 -109785888 + L2 LINE L2 3201 3313 0 2414 91 3 0 chr12 34497201 34497508 -109784981 - AluSp SINE Alu -5 308 1 228 221 162 0 chr12 34498774 34498842 -109783647 + MLT1L LTR MaLR 537 615 0 2204 108 0 3 chr12 34499115 34499412 -109783077 - AluSg SINE Alu -14 296 1 926 208 118 47 chr12 34499438 34499524 -109782965 - L1ME1 LINE L1 -9 6157 6079 3419 120 7 35 chr12 34499524 34500066 -109782423 - MER1A DNA MER1_type 0 527 1 926 208 118 47 chr12 34500066 34500301 -109782188 - L1ME1 LINE L1 -87 6079 5813 579 218 76 91 chr12 34500896 34501093 -109781396 - MIR SINE MIR 0 262 69 23 0 0 0 chr12 34501277 34501300 -109781189 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr12 34501769 34501797 -109780692 + AT_rich Low_complexity Low_complexity 1 28 0 1312 126 6 0 chr12 34501880 34502083 -109780406 + AluSg/x SINE Alu 103 306 0 883 239 45 1 chr12 34503364 34503603 -109778886 - MIR SINE MIR -7 255 4 2332 95 0 7 chr12 34503829 34504133 -109778356 - AluSq SINE Alu -10 303 2 339 135 19 0 chr12 34504315 34504367 -109778122 - AluSg/x SINE Alu -51 251 199 180 200 0 107 chr12 34504431 34504506 -109777983 - MIR SINE MIR -129 133 67 1066 204 40 13 chr12 34504985 34505211 -109777278 - MIR SINE MIR -24 238 7 200 246 29 87 chr12 34505937 34506006 -109776483 - MIR SINE MIR -121 87 23 273 283 152 86 chr12 34506150 34506419 -109776070 + L2 LINE L2 2124 2410 -904 1951 117 17 33 chr12 34506474 34506797 -109775692 + AluJb SINE Alu 1 312 0 380 274 11 21 chr12 34506833 34506928 -109775561 - MIR SINE MIR -157 105 12 2197 118 10 0 chr12 34506947 34507251 -109775238 - AluSx SINE Alu -5 307 1 196 292 92 60 chr12 34507432 34507617 -109774872 + L2 LINE L2 2544 2734 -580 181 303 157 11 chr12 34508270 34508299 -109774190 + L2 LINE L2 3072 3095 -218 1930 156 7 3 chr12 34508299 34508606 -109773883 - AluJo SINE Alu -4 308 1 181 303 157 11 chr12 34508606 34508754 -109773735 + L2 LINE L2 3095 3275 -38 348 24 0 0 chr12 34508896 34508937 -109773552 + (TA)n Simple_repeat Simple_repeat 2 42 0 342 0 0 0 chr12 34509559 34509597 -109772892 + (TA)n Simple_repeat Simple_repeat 1 38 0 1728 145 25 11 chr12 34509600 34509883 -109772606 - AluJb SINE Alu -25 287 1 253 379 14 0 chr12 34510284 34510392 -109772097 - MIR SINE MIR -105 103 7 267 83 42 0 chr12 34510416 34510464 -109772025 - L1MB3 LINE L1 0 6183 6134 185 267 57 95 chr12 34511390 34511463 -109771026 + MIR3 SINE MIR 84 153 -55 1752 195 0 0 chr12 34511463 34511765 -109770724 - AluJb SINE Alu -10 302 1 185 267 57 95 chr12 34511765 34511796 -109770693 + MIR3 SINE MIR 153 184 -24 26 30 0 0 chr12 34513114 34513147 -109769342 + AT_rich Low_complexity Low_complexity 1 33 0 612 298 184 20 chr12 34513383 34513842 -109768647 + L2 LINE L2 2613 3150 -163 2686 30 0 0 chr12 34513915 34514214 -109768275 - AluY SINE Alu -12 299 1 304 305 95 29 chr12 34514331 34514436 -109768053 + L2 LINE L2 3200 3311 -2 445 289 121 29 chr12 34514464 34514703 -109767786 - MIR SINE MIR 0 262 2 2369 79 13 3 chr12 34515476 34515779 -109766710 + AluSp SINE Alu 1 306 -7 24 0 0 0 chr12 34516445 34516469 -109766020 + AT_rich Low_complexity Low_complexity 1 24 0 230 311 100 0 chr12 34517808 34517898 -109764591 - MIR SINE MIR -87 175 77 2226 181 26 14 chr12 34517898 34518323 -109764166 + MSTB1 LTR MaLR 1 430 -2 217 343 20 30 chr12 34519549 34519648 -109762841 + L2 LINE L2 3179 3276 -37 2380 52 3 3 chr12 34520112 34520403 -109762086 + AluY SINE Alu 1 291 -20 317 181 28 14 chr12 34520593 34520665 -109761824 + MER34 LTR ERV1 442 514 -28 198 103 0 0 chr12 34521387 34521416 -109761073 + (TG)n Simple_repeat Simple_repeat 2 30 0 786 186 7 14 chr12 34521442 34521587 -109760902 - FRAM SINE Alu -33 143 1 2213 129 0 0 chr12 34522032 34522334 -109760155 - AluSx SINE Alu -10 302 1 2013 100 4 0 chr12 34522771 34523032 -109759457 + AluSx SINE Alu 6 267 -45 1938 214 152 7 chr12 34523165 34523713 -109758776 + L1ME1 LINE L1 5505 6131 -35 1683 163 57 0 chr12 34523714 34523997 -109758492 - AluJb SINE Alu -11 301 3 326 31 0 62 chr12 34524081 34524145 -109758344 + (TA)n Simple_repeat Simple_repeat 1 60 0 798 244 121 4 chr12 34524150 34524401 -109758088 - L1ME LINE L1 -375 5789 5508 372 116 35 0 chr12 34524438 34524524 -109757965 + (TA)n Simple_repeat Simple_repeat 1 89 0 2273 98 0 3 chr12 34524657 34524954 -109757535 + AluSc SINE Alu 1 296 -13 215 276 58 58 chr12 34525405 34525492 -109756997 - MIR3 SINE MIR -5 203 117 261 306 224 8 chr12 34525524 34525658 -109756831 - MIR SINE MIR -94 168 6 479 367 78 45 chr12 34526307 34526705 -109755784 - L2 LINE L2 0 3272 2862 1052 100 0 7 chr12 34526711 34526851 -109755638 - AluSq/x SINE Alu -173 139 1 404 214 51 101 chr12 34527676 34527763 -109754726 - LTR16A LTR ERVL -222 228 153 2144 114 3 0 chr12 34527763 34528061 -109754428 - AluSx SINE Alu -9 303 5 404 214 51 101 chr12 34528061 34528151 -109754338 - LTR16A LTR ERVL -297 153 60 905 233 15 15 chr12 34528199 34528470 -109754019 + L1MA9 LINE L1 6006 6276 -36 245 293 93 0 chr12 34528737 34528887 -109753602 - L1ME3 LINE L1 -212 5950 5787 1228 96 46 67 chr12 34529128 34529367 -109753122 + MER50 LTR ERV1 1 234 -500 * 1485 168 3 14 chr12 34529365 34529650 -109752839 + MER50 LTR ERV1 433 714 -20 195 42 0 0 chr12 34530665 34530689 -109751800 + (TG)n Simple_repeat Simple_repeat 2 25 0 2319 97 0 0 chr12 34531647 34531956 -109750533 - AluY SINE Alu -2 309 1 2272 98 3 0 chr12 34531965 34532262 -109750227 - AluSx SINE Alu -14 298 1 693 52 21 0 chr12 34532439 34532536 -109749953 - L1PB1 LINE L1 0 6151 6053 2282 165 61 38 chr12 34533151 34533477 -109749012 - L1MA9 LINE L1 -6 6306 5989 2039 125 10 10 chr12 34533477 34533781 -109748708 - AluJb SINE Alu -8 304 1 1361 177 108 14 chr12 34533790 34534067 -109748422 - AluJb SINE Alu -9 303 1 2282 165 61 38 chr12 34534067 34534215 -109748274 - L1MA9 LINE L1 -330 5982 5804 286 42 42 0 chr12 34534215 34534263 -109748226 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2282 165 61 38 chr12 34534263 34534354 -109748135 - L1MA9 LINE L1 -508 5804 5717 2116 126 0 0 chr12 34534685 34534978 -109747511 - AluSx SINE Alu -17 295 3 447 279 153 51 chr12 34535024 34535397 -109747092 - MLT1J LTR MaLR -1 510 100 345 192 0 0 chr12 34535428 34535501 -109746988 - LTR30 LTR ERV1 -98 624 552 328 248 83 9 chr12 34535500 34535609 -109746880 - MLT1J LTR MaLR -394 117 1 * 243 296 291 11 chr12 34536218 34536397 -109746092 - MIR SINE MIR 0 262 34 419 300 200 13 chr12 34536881 34537181 -109745308 + MLT1L LTR MaLR 10 365 -250 1878 125 65 44 chr12 34537690 34538057 -109744432 - THE1C LTR MaLR 0 375 1 894 267 59 4 chr12 34538058 34538294 -109744195 - MIR SINE MIR -12 250 2 195 200 238 50 chr12 34538397 34538477 -109744012 + MIR SINE MIR 35 129 -133 2048 114 44 0 chr12 34538507 34538805 -109743684 + AluY SINE Alu 1 311 0 241 370 81 19 chr12 34538882 34539093 -109743396 - L3 LINE CR1 -219 1358 1135 281 268 0 0 chr12 34539439 34539495 -109742994 + L3 LINE CR1 1517 1572 -5 229 266 0 43 chr12 34539611 34539705 -109742784 - L1MC4 LINE L1 -1339 6703 6614 194 0 39 0 chr12 34541447 34541473 -109741016 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 207 319 97 14 chr12 34542610 34542682 -109739807 + L2 LINE L2 3149 3226 -46 2083 84 33 4 chr12 34542702 34542995 -109739494 + AluSc SINE Alu 1 301 0 2072 85 85 0 chr12 34543347 34543628 -109738861 - AluY SINE Alu -6 305 1 2218 139 0 0 chr12 34545111 34545414 -109737075 - AluSx SINE Alu -9 303 1 2339 60 0 54 chr12 34546118 34546432 -109736057 - AluY SINE Alu -14 297 1 369 283 52 24 chr12 34546550 34546762 -109735727 + L1MC4a LINE L1 5558 5775 -346 24 32 0 0 chr12 34546860 34546891 -109735598 + AT_rich Low_complexity Low_complexity 1 31 0 561 129 0 12 chr12 34546891 34546976 -109735513 + AluS SINE Alu 1 84 -228 337 242 53 30 chr12 34547076 34547208 -109735281 + L1ME1 LINE L1 1597 1731 -4665 2336 71 7 0 chr12 34547208 34547514 -109734975 + AluSp SINE Alu 1 308 0 1837 128 0 102 chr12 34547527 34547870 -109734619 + AluSx SINE Alu 3 310 -2 2108 235 60 80 chr12 34548396 34549147 -109733342 + L1ME1 LINE L1 3451 4215 -2020 336 48 0 0 chr12 34549147 34549189 -109733300 + (CA)n Simple_repeat Simple_repeat 2 43 0 2108 235 60 80 chr12 34549189 34549936 -109732553 + L1ME1 LINE L1 4215 4975 -1260 2307 118 0 0 chr12 34549936 34550240 -109732249 + AluSx SINE Alu 1 304 -8 1999 133 13 17 chr12 34550242 34550542 -109731947 + AluSx SINE Alu 1 299 -13 2108 235 60 80 chr12 34550542 34551114 -109731375 + L1ME1 LINE L1 4976 5466 -769 2045 152 7 0 chr12 34551114 34551423 -109731066 + AluJb SINE Alu 1 311 -1 2108 235 60 80 chr12 34551423 34551746 -109730743 + L1ME1 LINE L1 5466 5794 -441 694 218 24 97 chr12 34551758 34551889 -109730600 + L1ME1 LINE L1 5908 6006 -229 1935 151 3 3 chr12 34551889 34552187 -109730302 + AluJo SINE Alu 1 298 -14 694 218 24 97 chr12 34552187 34552353 -109730136 + L1ME1 LINE L1 6006 6183 -52 354 328 113 39 chr12 34552384 34552719 -109729770 + L1MC4a LINE L1 5771 6130 -1678 1576 100 9 18 chr12 34553103 34553323 -109729166 - AluSx SINE Alu -92 220 3 2164 132 0 3 chr12 34553327 34553630 -109728859 - AluSg SINE Alu -8 302 1 27 0 0 0 chr12 34553632 34553659 -109728830 + AT_rich Low_complexity Low_complexity 1 27 0 1717 133 0 50 chr12 34554153 34554432 -109728057 + AluSx SINE Alu 43 307 -5 1892 162 0 29 chr12 34554546 34554855 -109727634 + AluJb SINE Alu 1 300 -12 912 202 12 12 chr12 34556098 34556271 -109726218 - AluJo/FRAM SINE Alu -6 306 134 2479 63 0 3 chr12 34556271 34556574 -109725915 - AluY SINE Alu -9 302 1 873 147 22 22 chr12 34556593 34556729 -109725760 + AluJo SINE Alu 1 136 -176 2343 69 10 29 chr12 34556803 34557109 -109725380 - AluSp SINE Alu -13 300 1 5795 120 11 34 chr12 34557267 34558650 -109723839 + L1PB2 LINE L1 4781 6143 -8 181 344 98 41 chr12 34558980 34559102 -109723387 + L2 LINE L2 3138 3266 -6 658 268 73 37 chr12 34559195 34559441 -109723048 + MIR SINE MIR 6 260 -2 696 172 0 0 chr12 34561367 34561483 -109721006 - AluSg/x SINE Alu -2 308 193 1891 117 7 10 chr12 34561818 34562117 -109720372 + AluSc SINE Alu 7 304 -5 657 101 10 10 chr12 34562148 34562247 -109720242 + AluS SINE Alu 1 99 -214 808 171 36 0 chr12 34562247 34562387 -109720102 + MER58B DNA MER1_type 196 340 -1 24 32 0 0 chr12 34562506 34562537 -109719952 + AT_rich Low_complexity Low_complexity 1 31 0 346 185 0 0 chr12 34563450 34563515 -109718974 + FLAM_A SINE Alu 1 65 -67 2205 75 4 14 chr12 34564549 34564849 -109717640 + AluSp SINE Alu 6 302 0 207 313 188 0 chr12 34565646 34565758 -109716731 - MIR SINE MIR -21 241 109 2291 88 0 7 chr12 34566254 34566548 -109715941 + AluSq SINE Alu 1 292 -21 225 269 127 37 chr12 34566929 34567063 -109715426 - MIR SINE MIR -42 220 75 2042 114 17 3 chr12 34567328 34567626 -109714863 + AluSx SINE Alu 1 302 -10 2275 106 10 0 chr12 34567797 34568098 -109714391 - AluSx SINE Alu -8 304 1 25 0 0 0 chr12 34569800 34569825 -109712664 + AT_rich Low_complexity Low_complexity 1 25 0 2231 94 3 0 chr12 34573028 34573314 -109709175 - AluSx SINE Alu -25 287 1 236 167 0 0 chr12 34573318 34573360 -109709129 - L1M4 LINE L1 -309 5869 5828 1547 166 93 0 chr12 34573361 34573674 -109708815 + MER7A DNA MER2_type 2 341 -5 360 167 108 10 chr12 34573675 34573777 -109708712 - L1M4 LINE L1 -367 5817 5706 2073 131 3 0 chr12 34573836 34574133 -109708356 - AluSx SINE Alu -14 298 1 2557 62 0 0 chr12 34574618 34574924 -109707565 - AluY SINE Alu -5 306 1 2416 74 3 0 chr12 34576161 34576460 -109706029 + AluSp SINE Alu 1 300 -13 195 296 0 42 chr12 34577465 34577536 -109704953 - MIR SINE MIR -103 105 38 2087 131 0 32 chr12 34578255 34578568 -109703921 - AluSq SINE Alu -10 303 1 1919 133 41 3 chr12 34579272 34579566 -109702923 - AluSx SINE Alu -7 305 1 705 159 0 38 chr12 34579907 34580039 -109702450 - FLAM_C SINE Alu -16 127 1 24 0 0 0 chr12 34580184 34580208 -109702281 + AT_rich Low_complexity Low_complexity 1 24 0 255 81 0 0 chr12 34580846 34580883 -109701606 + MADE1 DNA Mariner 2 38 -42 2283 78 10 0 chr12 34581314 34581607 -109700882 - AluY SINE Alu -15 296 1 2323 73 0 3 chr12 34581941 34582230 -109700259 - AluSg SINE Alu -21 289 2 1934 143 10 10 chr12 34582798 34583098 -109699391 - AluJo SINE Alu -12 300 1 264 228 35 0 chr12 34583294 34583343 -109699146 + MER7A DNA MER2_type 4 54 -294 1586 116 113 14 chr12 34583343 34583627 -109698862 - MER1B DNA MER1_type -2 337 26 1391 197 49 0 chr12 34583626 34583910 -109698579 + MER7A DNA MER2_type 50 345 -1 * 342 254 88 26 chr12 34583939 34584053 -109698436 - L1ME3A LINE L1 -8 6162 6042 229 67 0 0 chr12 34584054 34584084 -109698405 + Alu SINE Alu 1 30 -272 240 280 43 32 chr12 34584084 34584177 -109698312 + L1M4 LINE L1 4275 4368 -1778 2152 106 48 0 chr12 34584203 34584496 -109697993 + AluSx SINE Alu 1 307 -5 525 277 125 19 chr12 34584585 34584763 -109697726 - L1M4 LINE L1 -1405 4741 4583 1262 183 168 23 chr12 34584763 34585025 -109697464 + AluJb SINE Alu 1 300 -2 525 277 125 19 chr12 34585025 34585214 -109697275 - L1M4 LINE L1 -1563 4583 4335 1443 57 0 6 chr12 34586442 34586617 -109695872 - AluSg/x SINE Alu -10 300 127 267 262 24 36 chr12 34587809 34587893 -109694596 + MIR SINE MIR 119 201 -61 921 287 46 31 chr12 34588407 34588822 -109693667 - LTR16A LTR ERVL -6 444 24 1714 163 20 17 chr12 34589083 34589378 -109693111 - AluJo SINE Alu -16 296 1 301 248 34 34 chr12 34589480 34589597 -109692892 - MER87 LTR ERV1 -26 515 399 2429 86 3 0 chr12 34590242 34590546 -109691943 + AluSp SINE Alu 1 305 -8 2370 93 0 3 chr12 34591394 34591706 -109690783 + AluSx SINE Alu 1 311 -1 2385 89 0 0 chr12 34592557 34592859 -109689630 + AluSg SINE Alu 1 302 -8 336 263 53 26 chr12 34593450 34593564 -109688925 - L2 LINE L2 -2 3311 3195 402 261 33 92 chr12 34594566 34594695 -109687794 + MIR3 SINE MIR 21 137 -71 2333 102 0 10 chr12 34594695 34595009 -109687480 + AluY SINE Alu 1 311 0 402 261 33 92 chr12 34595009 34595063 -109687426 + MIR3 SINE MIR 137 193 -15 2125 122 6 13 chr12 34595173 34595485 -109687004 + AluSx SINE Alu 1 310 -2 2093 115 7 7 chr12 34595487 34595783 -109686706 + AluSx SINE Alu 3 298 -14 386 228 20 20 chr12 34596351 34596452 -109686037 - MER94 DNA DNA -33 101 1 1665 154 10 50 chr12 34596498 34596797 -109685692 - AluJb SINE Alu -25 287 1 4742 144 41 41 chr12 34596861 34597465 -109685024 - L1PB4 LINE L1 -4 6152 5538 2307 125 3 0 chr12 34597465 34597776 -109684713 - AluSq SINE Alu -1 312 1 4742 144 41 41 chr12 34597776 34598267 -109684222 - L1PB4 LINE L1 -618 5538 5048 338 311 68 0 chr12 34598434 34598566 -109683923 - MIR SINE MIR 0 262 122 208 346 144 10 chr12 34598645 34598749 -109683740 - L2 LINE L2 -5 3267 3150 2664 14 0 0 chr12 34599261 34599549 -109682940 - AluYa5 SINE Alu 0 311 24 2320 141 60 74 chr12 34600143 34600577 -109681912 - MSTC LTR MaLR 0 428 1 470 283 52 12 chr12 34600837 34601010 -109681479 - L1MEc LINE L1 -6177 219 40 296 209 86 50 chr12 34601467 34601606 -109680883 - Charlie7 DNA MER1_type 0 2612 2469 328 253 0 23 chr12 34601615 34601702 -109680787 - Charlie7 DNA MER1_type -2516 96 12 540 311 90 6 chr12 34602435 34602747 -109679742 - L1MC4a LINE L1 -1894 5914 5577 2169 127 3 3 chr12 34603135 34603443 -109679046 + AluSx SINE Alu 5 312 0 1157 180 63 38 chr12 34603486 34603725 -109678764 + AluJo SINE Alu 35 279 -33 459 204 7 22 chr12 34603731 34603868 -109678621 + GA-rich Low_complexity Low_complexity 3 137 0 323 200 33 0 chr12 34603970 34604030 -109678459 + AluSp/q SINE Alu 164 225 -78 189 0 0 0 chr12 34604030 34604051 -109678438 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 443 323 37 18 chr12 34605053 34605217 -109677272 + MIR SINE MIR 9 175 -87 352 328 23 15 chr12 34605872 34606003 -109676486 - L3b LINE CR1 -255 1328 1197 1179 154 0 0 chr12 34606004 34606179 -109676310 - AluSq SINE Alu -13 300 126 2280 94 3 7 chr12 34606179 34606488 -109676001 - AluY SINE Alu -3 308 1 858 147 22 22 chr12 34606507 34606643 -109675846 + AluJo SINE Alu 1 136 -176 2280 72 13 30 chr12 34606717 34607022 -109675467 - AluSp SINE Alu -13 300 1 6257 119 11 34 chr12 34607180 34608563 -109673926 + L1PB2 LINE L1 4781 6143 -8 653 268 73 37 chr12 34609108 34609354 -109673135 + MIR SINE MIR 6 260 -2 2174 126 3 3 chr12 34611279 34611589 -109670900 - AluSx SINE Alu -2 310 1 1998 103 4 11 chr12 34611718 34611991 -109670498 + AluSx SINE Alu 1 271 -41 243 0 0 0 chr12 34611999 34612026 -109670463 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 315 309 86 5 chr12 34612036 34612246 -109670243 - L1M4 LINE L1 -2379 3767 3541 4591 105 38 4 chr12 34612250 34612927 -109669562 - Tigger4(Zombi) DNA MER2_type 0 2731 2032 6872 92 3 5 chr12 34612928 34614530 -109667959 - L1PA11 LINE L1 -1 7611 5997 13942 198 72 27 chr12 34614531 34618653 -109663836 - L1PA11 LINE L1 -2180 5404 4 12088 126 55 21 chr12 34618656 34619306 -109663183 - Tigger4(Zombi) DNA MER2_type -690 2041 1414 2862 3 0 0 chr12 34619306 34619611 -109662878 - AluYa5 SINE Alu -6 305 1 12088 126 55 21 chr12 34619611 34620934 -109661555 - Tigger4(Zombi) DNA MER2_type -1317 1414 2 2467 76 0 3 chr12 34621133 34621434 -109661055 - AluSx SINE Alu -12 300 1 242 185 11 54 chr12 34621774 34621866 -109660623 + (CAAA)n Simple_repeat Simple_repeat 1 88 0 1779 185 3 10 chr12 34622128 34622442 -109660047 + AluJo SINE Alu 1 312 0 442 330 113 57 chr12 34622625 34623272 -109659217 + L2 LINE L2 365 1073 -2241 2276 98 0 3 chr12 34623272 34623568 -109658921 + AluSx SINE Alu 1 295 -17 442 330 113 57 chr12 34623568 34623766 -109658723 + L2 LINE L2 1073 1258 -2056 270 357 48 18 chr12 34623816 34623984 -109658505 + L2 LINE L2 2686 2858 -456 241 351 53 38 chr12 34624014 34624145 -109658344 + L2 LINE L2 3136 3268 -4 245 238 0 16 chr12 34624645 34624708 -109657781 - L1ME LINE L1 -739 5431 5370 6050 124 19 15 chr12 34624719 34625732 -109656757 - L1PA16 LINE L1 -9 6157 5141 1430 193 11 7 chr12 34625732 34626012 -109656477 + L1P LINE L1 4810 5090 -1056 742 236 52 39 chr12 34626043 34626424 -109656065 - L1ME LINE L1 -802 5344 4959 1997 155 48 0 chr12 34626431 34626747 -109655742 + MER1B DNA MER1_type 9 339 0 2120 125 10 10 chr12 34626812 34627115 -109655374 + AluSx SINE Alu 1 303 -9 24 0 0 0 chr12 34627166 34627190 -109655299 + AT_rich Low_complexity Low_complexity 1 24 0 2218 103 0 0 chr12 34627626 34627980 -109654509 + AluSx SINE Alu 1 354 0 245 237 82 52 chr12 34628213 34628310 -109654179 + L2 LINE L2 3214 3313 0 204 40 0 0 chr12 34628490 34628515 -109653974 + (CA)n Simple_repeat Simple_repeat 2 26 0 1551 281 34 57 chr12 34629199 34629794 -109652695 + MLT1K LTR MaLR 2 582 -6 623 270 122 0 chr12 34630831 34631020 -109651469 + MIR SINE MIR 32 243 -19 209 205 121 72 chr12 34631545 34631628 -109650861 - L2 LINE L2 -631 2683 2597 2158 111 3 26 chr12 34631765 34632072 -109650417 + AluSx SINE Alu 3 302 -10 182 311 41 74 chr12 34632084 34632206 -109650283 - L2 LINE L2 -925 2389 2272 2372 68 20 3 chr12 34632237 34632531 -109649958 - AluY SINE Alu -12 299 1 281 228 114 26 chr12 34633146 34633260 -109649229 + MIR3 SINE MIR 49 172 -36 2562 55 0 16 chr12 34633789 34634101 -109648388 - AluSc SINE Alu -2 307 1 1737 144 38 14 chr12 34634251 34634542 -109647947 + AluJb SINE Alu 1 298 -14 2311 95 3 10 chr12 34634653 34634959 -109647530 + AluY SINE Alu 1 304 -7 284 211 56 0 chr12 34635020 34635091 -109647398 + MER116 DNA Mariner 2 76 -4 338 304 43 14 chr12 34635379 34635517 -109646972 - MIR3 SINE MIR -7 201 60 1470 183 44 0 chr12 34637559 34637856 -109644633 - AluJb SINE Alu 0 309 1 1782 168 50 0 chr12 34637873 34638170 -109644319 - AluJo SINE Alu 0 312 1 2223 125 0 0 chr12 34638286 34638591 -109643898 - AluSx SINE Alu -7 305 1 2349 95 3 0 chr12 34639255 34639551 -109642938 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr12 34639947 34639977 -109642512 + AT_rich Low_complexity Low_complexity 1 30 0 2284 95 14 3 chr12 34640731 34641027 -109641462 + AluSc SINE Alu 1 299 -10 2145 127 3 0 chr12 34641594 34641902 -109640587 + AluSg SINE Alu 1 309 -1 34 55 0 0 chr12 34642234 34642289 -109640200 + AT_rich Low_complexity Low_complexity 1 55 0 346 382 64 34 chr12 34642679 34642946 -109639543 + L2 LINE L2 2992 3266 -6 234 250 16 31 chr12 34643316 34643380 -109639109 + GA-rich Low_complexity Low_complexity 4 66 0 342 0 0 0 chr12 34643607 34643645 -109638844 + (TG)n Simple_repeat Simple_repeat 2 39 0 2305 105 0 3 chr12 34643677 34643983 -109638506 - AluSg SINE Alu -5 305 1 276 134 15 30 chr12 34644157 34644224 -109638265 + GA-rich Low_complexity Low_complexity 1 66 0 643 231 57 94 chr12 34644367 34644452 -109638037 + MER63A DNA MER1_type 2 89 -1599 678 180 90 0 chr12 34644452 34644574 -109637915 - FLAM_A SINE Alu 0 133 1 643 231 57 94 chr12 34644574 34644700 -109637789 + MER63A DNA MER1_type 89 205 -5 817 280 62 8 chr12 34645880 34646123 -109636366 + MIR SINE MIR 7 262 0 3724 142 19 2 chr12 34646557 34647126 -109635363 + L1PA16 LINE L1 5587 6165 -1 186 133 0 0 chr12 34647261 34647291 -109635198 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 298 247 90 22 chr12 34648244 34648333 -109634156 + MLT1K LTR MaLR 494 588 0 847 157 121 0 chr12 34648680 34648846 -109633643 - MER5A DNA MER1_type -3 186 1 1918 156 3 3 chr12 34648928 34649229 -109633260 - AluJo SINE Alu -11 301 1 671 144 127 0 chr12 34649406 34649524 -109632965 + FLAM_C SINE Alu 1 133 0 2049 121 13 10 chr12 34650871 34651169 -109631320 - AluSx SINE Alu -13 299 1 2124 128 0 0 chr12 34651307 34651603 -109630886 - AluSg SINE Alu -14 296 1 2306 81 0 10 chr12 34651616 34651911 -109630578 - AluSg SINE Alu -18 292 1 217 268 37 37 chr12 34652818 34652900 -109629589 + L3 LINE CR1 671 752 -825 419 339 81 21 chr12 34653146 34653382 -109629107 + L3 LINE CR1 1286 1535 -42 197 318 59 24 chr12 34653417 34653502 -109628987 - MER5A DNA MER1_type -54 135 48 1183 69 0 98 chr12 34653900 34654073 -109628416 + AluSg SINE Alu 1 156 -154 2515 74 0 10 chr12 34654378 34654688 -109627801 - AluSp SINE Alu -6 307 1 956 155 13 0 chr12 34654690 34654845 -109627644 - FRAM SINE Alu -14 162 6 346 287 114 38 chr12 34655101 34655338 -109627151 - L2 LINE L2 -430 2884 2630 2365 82 16 3 chr12 34655694 34655998 -109626491 + AluSg SINE Alu 1 308 -2 2424 60 26 3 chr12 34656572 34656874 -109625615 + AluSq SINE Alu 1 309 -4 2010 118 4 11 chr12 34658211 34658491 -109623998 - AluSx SINE Alu -14 298 21 2465 70 3 6 chr12 34658881 34659193 -109623296 + AluY SINE Alu 1 311 0 183 280 80 13 chr12 34659988 34660063 -109622426 - L2 LINE L2 -665 2649 2570 2327 96 7 3 chr12 34660075 34660378 -109622111 + AluSp SINE Alu 1 304 -9 452 326 46 20 chr12 34660521 34660717 -109621772 + MIR SINE MIR 48 248 -14 228 111 0 0 chr12 34661139 34661175 -109621314 + (CA)n Simple_repeat Simple_repeat 2 37 0 322 310 25 65 chr12 34661199 34661399 -109621090 + L2 LINE L2 2864 3055 -217 673 165 47 16 chr12 34661433 34661560 -109620929 + FLAM_A SINE Alu 3 133 0 233 255 0 0 chr12 34661599 34661650 -109620839 + L2 LINE L2 3221 3271 -1 2127 115 0 7 chr12 34661756 34662052 -109620437 + AluSx SINE Alu 5 298 -14 1897 133 78 0 chr12 34662124 34662417 -109620072 + L1PA16 LINE L1 5841 6156 -10 21 0 0 0 chr12 34662615 34662636 -109619853 + AT_rich Low_complexity Low_complexity 1 21 0 308 212 26 88 chr12 34662655 34662768 -109619721 + MIR SINE MIR 110 215 -47 2008 129 3 20 chr12 34662836 34663130 -109619359 - AluJo SINE Alu -23 289 1 2121 86 9 76 chr12 34663876 34664191 -109618298 + AluSg SINE Alu 1 294 -16 2381 75 0 0 chr12 34665085 34665379 -109617110 - AluY SINE Alu -17 294 1 1377 133 0 5 chr12 34665939 34666135 -109616354 + AluY SINE Alu 95 289 -22 1289 178 78 0 chr12 34666200 34666419 -109616070 + MER46A DNA MER2_type 1 236 0 2220 103 0 13 chr12 34666552 34666854 -109615635 - AluSx SINE Alu -14 298 1 402 264 0 69 chr12 34667914 34668073 -109614416 + L2 LINE L2 2912 3059 -213 486 253 157 15 chr12 34668096 34668294 -109614195 + L1ME LINE L1 5545 5770 -351 24 32 0 0 chr12 34668478 34668509 -109613980 + AT_rich Low_complexity Low_complexity 1 31 0 2437 74 6 6 chr12 34668535 34668847 -109613642 + AluSx SINE Alu 1 312 0 335 332 81 27 chr12 34669221 34669540 -109612949 - L2 LINE L2 -461 2853 2470 2081 89 0 0 chr12 34669540 34669809 -109612680 + L1PA5 LINE L1 5886 6154 0 335 332 81 27 chr12 34669809 34669844 -109612645 - L2 LINE L2 -844 2470 2438 540 226 85 34 chr12 34669929 34670106 -109612383 - MIR SINE MIR -65 197 12 235 319 0 42 chr12 34670158 34670185 -109612304 - L2 LINE L2 -1292 2022 1995 1930 163 0 7 chr12 34670185 34670485 -109612004 + AluJo SINE Alu 1 298 -14 235 319 0 42 chr12 34670485 34670576 -109611913 - L2 LINE L2 -1319 1995 1909 1421 183 27 24 chr12 34670991 34671128 -109611361 + AluJo SINE Alu 3 138 -174 530 51 13 0 chr12 34671128 34671206 -109611283 + (TA)n Simple_repeat Simple_repeat 2 80 0 1421 183 27 24 chr12 34671206 34671363 -109611126 + AluJo SINE Alu 138 298 -14 292 303 61 13 chr12 34671619 34671933 -109610556 + L1M3 LINE L1 5107 5431 -743 22 35 0 0 chr12 34672458 34672487 -109610002 + AT_rich Low_complexity Low_complexity 1 29 0 1859 168 3 0 chr12 34672496 34672799 -109609690 - AluSx SINE Alu -8 304 1 402 294 46 30 chr12 34672838 34673035 -109609454 + L1ME LINE L1 5408 5607 -514 3169 256 96 41 chr12 34673063 34673612 -109608877 + L1MEc LINE L1 85 602 -5615 1252 70 25 0 chr12 34673612 34673769 -109608720 + L1PA8 LINE L1 5999 6159 -13 3169 256 96 41 chr12 34673769 34673793 -109608696 + L1MEc LINE L1 602 623 -5594 2257 97 0 0 chr12 34673793 34674099 -109608390 + AluSg SINE Alu 3 308 0 3169 256 96 41 chr12 34674099 34674813 -109607676 + L1MEc LINE L1 623 1296 -4921 473 103 0 0 chr12 34674914 34674982 -109607507 + AluSp/q SINE Alu 238 305 -8 1980 148 7 0 chr12 34675525 34675823 -109606666 - AluJb SINE Alu -12 300 1 2206 114 0 7 chr12 34675948 34676255 -109606234 - AluSx SINE Alu -7 305 1 1718 166 3 27 chr12 34677178 34677473 -109605016 - AluJo SINE Alu -24 288 1 197 343 0 14 chr12 34677473 34677543 -109604946 - L2 LINE L2 -10 3303 3235 509 299 192 37 chr12 34678086 34678741 -109603748 - L2 LINE L2 -742 2572 1816 1876 163 0 3 chr12 34678955 34679255 -109603234 - AluJb SINE Alu -13 299 1 2166 113 3 0 chr12 34681676 34681967 -109600522 + AluSq SINE Alu 1 292 -21 2197 109 0 7 chr12 34681972 34682274 -109600215 + AluSq SINE Alu 1 300 -13 2422 65 3 3 chr12 34682546 34682854 -109599635 + AluSg SINE Alu 1 308 -2 604 143 0 31 chr12 34683849 34683947 -109598542 - FLAM_A SINE Alu -8 134 40 934 62 0 0 chr12 34684091 34684203 -109598286 - AluSp/q SINE Alu -24 289 178 1659 183 116 45 chr12 34686276 34686599 -109595890 + MER39 LTR ERV1 1 299 -408 2156 128 0 0 chr12 34686599 34686895 -109595594 + AluSx SINE Alu 2 297 -15 1659 183 116 45 chr12 34686895 34687067 -109595422 + MER39 LTR ERV1 299 707 0 1618 120 42 94 chr12 34687798 34688106 -109594383 + AluSx SINE Alu 1 292 -20 1756 168 0 29 chr12 34689136 34689445 -109593044 + AluJb SINE Alu 1 300 -12 1786 151 7 0 chr12 34689888 34690166 -109592323 - AluSx SINE Alu -20 292 13 239 146 0 0 chr12 34740227 34740275 -109542214 - L1MB3 LINE L1 -7 6176 6129 416 303 123 0 chr12 34740295 34740450 -109542039 - L3 LINE CR1 -72 1505 1332 2096 142 6 12 chr12 34740684 34741029 -109541460 + MER2 DNA MER2_type 1 343 -1 364 300 57 21 chr12 34741134 34741274 -109541215 + L3 LINE CR1 579 723 -854 734 156 78 7 chr12 34741637 34741791 -109540698 - MER96B DNA MER1_type? -252 165 1 832 310 142 2 chr12 34741849 34742243 -109540246 + L3 LINE CR1 787 1235 -342 188 356 0 23 chr12 34742305 34742392 -109540097 + L3 LINE CR1 1492 1576 -1 1978 168 0 0 chr12 34742627 34742930 -109539559 - AluSx SINE Alu -9 303 1 1512 191 41 31 chr12 34743322 34743616 -109538873 - AluJb SINE Alu -15 297 1 710 331 105 23 chr12 34743923 34744241 -109538248 - L2 LINE L2 0 3313 2948 2223 218 55 2 chr12 34744241 34744754 -109537735 + MLT1F LTR MaLR 1 540 -2 710 331 105 23 chr12 34744754 34744873 -109537616 - L2 LINE L2 -365 2948 2840 2071 138 0 0 chr12 34745039 34745329 -109537160 + AluSx SINE Alu 4 293 -19 2290 76 34 3 chr12 34745598 34745889 -109536600 - AluSp SINE Alu -13 300 1 1092 196 53 65 chr12 34747756 34747976 -109534513 + Charlie1a DNA MER1_type 1 217 -2544 2084 113 10 14 chr12 34747976 34748267 -109534222 - AluSx SINE Alu -22 290 1 1092 196 53 65 chr12 34748267 34748367 -109534122 + Charlie1a DNA MER1_type 217 317 -1138 32 26 0 0 chr12 34748715 34748754 -109533735 + AT_rich Low_complexity Low_complexity 1 39 0 1878 135 39 4 chr12 34748870 34749151 -109533338 - AluSx SINE Alu -21 291 1 1813 179 61 5 chr12 34749156 34749547 -109532942 + Charlie1a DNA MER1_type 330 742 -713 326 204 0 0 chr12 34749547 34749601 -109532888 - MIR SINE MIR -190 72 19 835 110 61 49 chr12 34750124 34750288 -109532201 + MSTB1 LTR MaLR 1 166 -266 260 331 0 8 chr12 34750356 34750483 -109532006 - L1MC4a LINE L1 -1898 5910 5785 2422 73 0 0 chr12 34750516 34750816 -109531673 - AluY SINE Alu -11 300 1 1961 157 0 3 chr12 34751149 34751435 -109531054 + AluSx SINE Alu 8 292 -20 608 253 26 32 chr12 34752380 34752469 -109530020 + MIR SINE MIR 15 103 -159 2053 150 38 3 chr12 34752469 34752816 -109529673 - MER46B DNA MER2_type 0 236 3 608 253 26 32 chr12 34752816 34752916 -109529573 + MIR SINE MIR 103 203 -59 196 171 0 0 chr12 34753742 34753783 -109528706 - L2 LINE L2 0 3313 3273 2064 105 170 14 chr12 34754111 34754288 -109528201 - MSTA LTR MaLR 0 428 280 477 50 0 0 chr12 34754288 34754348 -109528141 + (GA)n Simple_repeat Simple_repeat 2 61 0 2064 105 170 14 chr12 34754348 34754540 -109527949 - MSTA LTR MaLR -148 280 1 2486 128 30 58 chr12 34755048 34755548 -109526941 + LTR19A LTR ERV1 1 486 0 2380 179 15 58 chr12 34755580 34756127 -109526362 + LTR9 LTR ERV1 1 523 -89 1113 109 6 0 chr12 34756131 34756287 -109526202 - AluSg/x SINE Alu 0 312 156 338 243 19 19 chr12 34759072 34759175 -109523314 + LTR33A LTR ERVL 418 520 -3 * 719 224 44 62 chr12 34759174 34759714 -109522775 - MER67C LTR ERV1 0 543 59 1957 126 39 11 chr12 34760027 34760312 -109522177 - AluSx SINE Alu -19 293 1 194 146 0 24 chr12 34761766 34761807 -109520682 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 259 256 33 58 chr12 34762232 34762353 -109520136 - LTR16C LTR ERVL 0 491 374 1652 183 65 14 chr12 34762354 34762770 -109519719 - LTR23 LTR ERV1 0 437 1 369 279 119 20 chr12 34762770 34762971 -109519518 - LTR16C LTR ERVL -120 371 151 34 24 0 0 chr12 34763755 34763796 -109518693 + AT_rich Low_complexity Low_complexity 1 41 0 187 271 14 29 chr12 34764669 34764739 -109517750 + MIR3 SINE MIR 126 194 -14 21 0 0 0 chr12 34764937 34764958 -109517531 + AT_rich Low_complexity Low_complexity 1 21 0 225 315 11 11 chr12 34765789 34765878 -109516611 - MIR SINE MIR -11 251 163 27 0 0 0 chr12 34767697 34767724 -109514765 + AT_rich Low_complexity Low_complexity 1 27 0 623 274 82 35 chr12 34767724 34767979 -109514510 - L2 LINE L2 -43 3270 3004 240 246 112 82 chr12 34768082 34768216 -109514273 - MIR3 SINE MIR -68 140 3 181 286 40 87 chr12 34768421 34768547 -109513942 - L2 LINE L2 -4 3309 3190 4057 25 0 0 chr12 34769904 34770377 -109512112 + L1PA3 LINE L1 5683 6155 0 1708 115 0 0 chr12 34770675 34770919 -109511570 + L1PB1 LINE L1 5907 6150 -1 180 324 14 0 chr12 34771362 34771433 -109511056 + L2 LINE L2 2373 2444 -870 857 244 105 55 chr12 34771453 34771646 -109510843 + MLT1H LTR MaLR 1 183 -366 987 139 51 74 chr12 34771646 34771862 -109510627 - MER20 DNA MER1_type -4 215 5 857 244 105 55 chr12 34771862 34771996 -109510493 + MLT1H LTR MaLR 183 387 -162 790 256 34 28 chr12 34772272 34772666 -109509823 - L1M4 LINE L1 -1467 4679 4280 2239 109 0 3 chr12 34772666 34772968 -109509521 - AluSc SINE Alu -8 301 1 790 256 34 28 chr12 34772968 34773045 -109509444 - L1M4 LINE L1 -1866 4280 4205 6643 140 23 19 chr12 34773408 34774084 -109508405 - L1MA5 LINE L1 0 6300 5628 2231 99 0 16 chr12 34774084 34774388 -109508101 - AluSx SINE Alu -13 299 1 6643 140 23 19 chr12 34774388 34774569 -109507920 - L1MA5 LINE L1 -672 5628 5449 2234 110 10 0 chr12 34774569 34774868 -109507621 - AluSx SINE Alu -10 302 1 6643 140 23 19 chr12 34774868 34776233 -109506256 - L1MA5 LINE L1 -851 5449 4066 623 256 22 33 chr12 34776279 34776459 -109506030 + MER5B DNA MER1_type 1 178 0 2008 147 139 16 chr12 34777798 34778179 -109504310 - MSTA LTR MaLR 0 428 1 497 274 12 90 chr12 34779385 34779640 -109502849 + MER102b DNA MER1_type 103 337 -4 253 250 26 26 chr12 34779904 34779980 -109502509 + CT-rich Low_complexity Low_complexity 2 77 0 5277 154 22 23 chr12 34780142 34781598 -109500891 - L1MA8 LINE L1 -1 6290 4827 5449 172 20 14 chr12 34781822 34783007 -109499482 - L1 LINE L1 -1136 5010 3818 763 302 64 33 chr12 34783155 34783347 -109499142 - L2 LINE L2 -589 2725 2540 2126 133 12 0 chr12 34783347 34783678 -109498811 + L1PA16 LINE L1 5828 6162 -4 763 302 64 33 chr12 34783678 34783905 -109498584 - L2 LINE L2 -774 2540 2293 889 202 6 0 chr12 34783911 34784079 -109498410 - MER45A DNA AcHobo 0 178 10 345 288 0 0 chr12 34784095 34784175 -109498314 - L2 LINE L2 -1031 2283 2204 3956 134 13 3 chr12 34784433 34785061 -109497428 + MER41B LTR ERV1 2 635 0 13545 28 1 2 chr12 34785396 34787795 -109494694 + L1PA4 LINE L1 3757 6155 0 305 303 148 49 chr12 34788034 34788298 -109494191 - L2 LINE L2 -411 2903 2614 2338 107 30 35 chr12 34788316 34788682 -109493807 + THE1B LTR MaLR 1 364 0 11594 98 5 4 chr12 34788682 34790261 -109492228 + THE1B-int LTR MaLR 1 1580 0 2345 107 33 33 chr12 34790261 34790625 -109491864 + THE1B LTR MaLR 1 364 0 4813 147 36 8 chr12 34790759 34791562 -109490927 + LTR1B LTR ERV1 1 826 0 3101 164 54 51 chr12 34791848 34792572 -109489917 + LTR8A LTR ERV1 1 726 -1 27 0 0 0 chr12 34792828 34792855 -109489634 + AT_rich Low_complexity Low_complexity 1 27 0 1313 217 40 7 chr12 34792925 34793202 -109489287 - MER61D LTR ERV1 0 501 216 596 218 35 23 chr12 34793273 34793447 -109489042 - LTR28 LTR ERV1 -844 176 1 830 179 6 0 chr12 34793690 34793858 -109488631 + CT-rich Low_complexity Low_complexity 4 172 0 6579 83 11 10 chr12 34794296 34795785 -109486704 - SVA Other Other -839 1381 8 22 35 0 0 chr12 34795893 34795922 -109486567 + AT_rich Low_complexity Low_complexity 1 29 0 221 311 95 34 chr12 34796226 34796374 -109486115 + MIR3 SINE MIR 43 199 -9 2346 145 51 10 chr12 34796595 34797010 -109485479 + MSTB1 LTR MaLR 1 432 0 431 291 118 42 chr12 34797204 34797517 -109484972 + MLT1J2 LTR MaLR 92 428 -22 892 216 19 29 chr12 34797598 34797933 -109484556 - L1ME LINE L1 -651 5515 5186 2958 158 26 89 chr12 34798046 34798788 -109483701 + LTR34 LTR ERV1 1 695 -4 243 93 0 23 chr12 34798792 34798835 -109483654 - L1ME LINE L1 -976 5170 5129 355 160 0 13 chr12 34798904 34798979 -109483510 + L1MA10 LINE L1 6254 6327 -7 326 255 128 10 chr12 34799846 34799948 -109482541 - MIR SINE MIR -78 184 71 602 246 82 100 chr12 34800110 34800500 -109481989 + MLT1J2 LTR MaLR 67 449 -1 2129 129 3 0 chr12 34800765 34801060 -109481429 + AluSx SINE Alu 1 296 -16 473 247 98 35 chr12 34801128 34801328 -109481161 + MIR SINE MIR 3 214 -48 1056 296 84 52 chr12 34801329 34801999 -109480490 + MER21B LTR ERV1 24 714 -149 312 217 14 0 chr12 34802000 34802069 -109480420 + MIR SINE MIR 191 260 -2 203 359 0 0 chr12 34802184 34802248 -109480241 - MIR SINE MIR -105 103 40 238 216 40 14 chr12 34802757 34802831 -109479658 + MLT1K LTR MaLR 509 584 -4 214 204 0 20 chr12 34803640 34803689 -109478800 + CT-rich Low_complexity Low_complexity 2 49 0 5795 115 29 9 chr12 34803857 34804485 -109478004 - L1PBa LINE L1 -4115 2748 2089 2278 124 7 0 chr12 34804485 34804791 -109477698 - AluSg SINE Alu -2 308 1 5795 115 29 9 chr12 34804791 34805200 -109477289 - L1PBa LINE L1 -4774 2089 1690 4328 119 178 79 chr12 34805202 34806616 -109475873 - pTR5 LTR ERV1 -11 2427 743 1677 209 66 2 chr12 34806616 34807461 -109475028 - L1PBa LINE L1 -5169 1694 652 468 227 81 32 chr12 34807458 34807643 -109474846 - L1PBa LINE L1 -6664 199 6 * 25 90 0 0 chr12 34808471 34808538 -109473951 + AT_rich Low_complexity Low_complexity 1 67 0 405 290 116 14 chr12 34808745 34808883 -109473606 - MIR SINE MIR -108 154 3 26 0 0 0 chr12 34809577 34809603 -109472886 + AT_rich Low_complexity Low_complexity 1 26 0 2008 222 12 37 chr12 34810631 34811149 -109471340 - MLT1D LTR MaLR 0 505 1 768 236 18 71 chr12 34811149 34811429 -109471060 - MLT1D-int LTR MaLR 0 1371 1107 385 205 12 0 chr12 34811502 34811585 -109470904 - MLT1D-int LTR MaLR -1270 101 18 1364 224 147 19 chr12 34811612 34812151 -109470338 - L1ME2 LINE L1 -174 5990 5383 438 299 65 18 chr12 34812169 34812510 -109469979 - L1MDa LINE L1 -4796 1419 1063 2065 139 7 0 chr12 34812542 34812845 -109469644 - AluSx SINE Alu -5 307 3 687 288 130 38 chr12 34812869 34813692 -109468797 - L1MDa LINE L1 -5453 943 45 939 205 16 16 chr12 34813823 34814067 -109468422 + L1 LINE L1 4745 4988 -1158 390 292 105 69 chr12 34814285 34814648 -109467841 + L3b LINE CR1 1107 1482 -101 2235 130 0 23 chr12 34816583 34816928 -109465561 - MER1B DNA MER1_type 0 337 1 392 301 81 0 chr12 34817891 34818027 -109464462 + MIR SINE MIR 72 218 -44 772 273 64 16 chr12 34818798 34819047 -109463442 - MIR SINE MIR 0 262 2 210 331 39 23 chr12 34819618 34819748 -109462741 + L2 LINE L2 1775 1906 -1408 183 269 231 9 chr12 34820545 34820653 -109461836 - L2 LINE L2 0 3313 3182 1581 124 0 0 chr12 34820947 34821156 -109461333 + AluSx SINE Alu 1 209 -103 2280 137 86 2 chr12 34821226 34821621 -109460868 + MSTA LTR MaLR 1 428 0 256 324 0 14 chr12 34822417 34822491 -109459998 + L2 LINE L2 3198 3270 -2 397 169 13 26 chr12 34823107 34823184 -109459305 + L2 LINE L2 3225 3300 -13 225 208 0 125 chr12 34824048 34824120 -109458369 - MIR SINE MIR -32 230 168 701 192 0 0 chr12 34824123 34824253 -109458236 + MSTC LTR MaLR 251 380 -48 811 287 46 8 chr12 34824278 34824515 -109457974 - MIR SINE MIR 0 262 17 366 297 70 79 chr12 34825310 34825640 -109456849 + L1M2 LINE L1 669 995 -5854 25 0 0 0 chr12 34826267 34826292 -109456197 + AT_rich Low_complexity Low_complexity 1 25 0 743 318 139 3 chr12 34826820 34827144 -109455345 + L2 LINE L2 2941 3308 -5 1879 128 42 33 chr12 34827465 34827730 -109454759 - MER1B DNA MER1_type -2373 339 69 9040 38 2 2 chr12 34827730 34828801 -109453688 + MER11C LTR ERVK 1 1071 0 1879 128 42 33 chr12 34828801 34828871 -109453618 - MER1B DNA MER1_type -2643 69 1 23 54 0 0 chr12 34829616 34829653 -109452836 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr12 34830546 34830570 -109451919 + AT_rich Low_complexity Low_complexity 1 24 0 2312 88 0 0 chr12 34830657 34830952 -109451537 - AluY SINE Alu -16 295 1 2025 103 4 4 chr12 34830959 34831231 -109451258 - AluSp SINE Alu -15 298 27 233 236 87 63 chr12 34833227 34833354 -109449135 + L1MEd LINE L1 89 218 -5987 4282 202 45 28 chr12 34833700 34834791 -109447698 + L1MC3 LINE L1 6677 7785 0 330 256 62 6 chr12 34834796 34834972 -109447517 + L1MEd LINE L1 1304 1489 -4907 325 355 47 0 chr12 34835009 34835181 -109447308 + L1M4 LINE L1 3684 3863 -2283 1632 154 12 77 chr12 34835181 34835505 -109446984 - AluSg SINE Alu -7 303 1 565 291 13 0 chr12 34835634 34835785 -109446704 + L1M2 LINE L1 331 483 -6366 9170 215 32 18 chr12 34836063 34839336 -109443153 + L1M2 LINE L1 710 4021 -2827 2448 193 18 2 chr12 34839349 34839856 -109442633 + L1M2 LINE L1 4410 4924 -1924 647 128 69 0 chr12 34839856 34839958 -109442531 - AluSc SINE Alu -13 296 188 3594 70 13 64 chr12 34839993 34840540 -109441949 - L1PA7 LINE L1 -13 6141 5623 454 78 0 0 chr12 34840550 34840614 -109441875 + L1PA11 LINE L1 5669 5732 -436 * 1336 90 71 0 chr12 34840613 34840825 -109441664 + L1PBa LINE L1 2187 2413 -4450 2659 67 28 8 chr12 34840931 34841289 -109441200 + L1PA11 LINE L1 5810 6174 0 4353 117 33 37 chr12 34841289 34842098 -109440391 + Tigger1 DNA MER2_type 1467 2272 -146 13257 180 36 6 chr12 34842113 34847485 -109435004 - L1PB1 LINE L1 -3 6864 1339 5479 93 109 88 chr12 34847533 34849036 -109433453 + pTR5 LTR ERV1 743 2438 0 4746 178 90 6 chr12 34849042 34850080 -109432409 - L1PB1 LINE L1 -5723 1140 16 927 170 0 0 chr12 34850128 34850287 -109432202 + Tigger1 DNA MER2_type 2260 2418 0 304 271 107 0 chr12 34850312 34850489 -109432000 - L1M4c LINE L1 -4764 1620 1425 3340 70 2 0 chr12 34850511 34850941 -109431548 - L1PA10 LINE L1 -9 6159 5729 1541 110 22 0 chr12 34851811 34852038 -109430451 - L1PA15 LINE L1 -9 6156 5925 2002 128 7 0 chr12 34852066 34852375 -109430114 + AluSx SINE Alu 1 311 0 1244 126 61 58 chr12 34852626 34852807 -109429682 - L1MA8 LINE L1 -2 6289 6110 2183 123 0 0 chr12 34852807 34853092 -109429397 + AluSx SINE Alu 1 285 -27 504 0 0 0 chr12 34853097 34853153 -109429336 + (TA)n Simple_repeat Simple_repeat 1 56 0 1244 126 61 58 chr12 34853153 34853242 -109429247 - L1MA8 LINE L1 -184 6107 6012 426 277 45 45 chr12 34853383 34853585 -109428904 + L1ME4a LINE L1 5715 5916 -205 25 0 0 0 chr12 34853719 34853744 -109428745 + AT_rich Low_complexity Low_complexity 1 25 0 180 345 36 12 chr12 34854327 34854411 -109428078 - MIR SINE MIR -140 122 37 234 174 0 22 chr12 34855114 34855160 -109427329 - L3 LINE CR1 -9 1568 1524 1560 203 31 17 chr12 34855403 34855763 -109426726 + MLT1A1 LTR MaLR 1 365 0 2097 137 3 10 chr12 34855901 34856214 -109426275 + AluSx SINE Alu 1 311 -1 3004 183 17 12 chr12 34856287 34856872 -109425617 + Tigger7 DNA MER2_type 1 588 -1899 722 202 125 0 chr12 34857478 34857646 -109424843 + MER5A DNA MER1_type 1 189 0 694 315 97 39 chr12 34857647 34858060 -109424429 + LTR16A LTR ERVL 1 437 -13 22 0 0 0 chr12 34858726 34858748 -109423741 + AT_rich Low_complexity Low_complexity 1 22 0 1775 79 117 0 chr12 34859030 34859296 -109423193 - L1PA13 LINE L1 -4 6159 5863 239 122 0 24 chr12 34859510 34859551 -109422938 - L2 LINE L2 -19 3253 3214 21 36 0 0 chr12 34859727 34859755 -109422734 + AT_rich Low_complexity Low_complexity 1 28 0 2415 129 60 21 chr12 34860219 34860652 -109421837 - LTR7 LTR ERV1 0 450 1 10336 93 2 3 chr12 34860652 34862158 -109420331 - HERVH LTR ERV1 0 7713 6209 2985 128 14 9 chr12 34862151 34862789 -109419700 - HERVH LTR ERV1 -6767 946 1 * 2315 126 57 30 chr12 34862791 34863227 -109419262 - LTR7 LTR ERV1 -2 448 1 23 33 0 0 chr12 34863231 34863261 -109419228 + AT_rich Low_complexity Low_complexity 1 30 0 357 218 2 16 chr12 34863703 34863794 -109418695 + MLT1J2 LTR MaLR 72 160 -249 240 276 143 0 chr12 34863853 34863958 -109418531 + MLT1J2 LTR MaLR 256 375 -75 194 325 117 42 chr12 34864350 34864470 -109418019 - L2 LINE L2 -6 3266 3138 431 264 25 0 chr12 34865212 34865333 -109417156 + MER94 DNA DNA 7 130 -4 2229 137 7 41 chr12 34865889 34866305 -109416184 - L1MA6 LINE L1 -4 6296 5895 2047 124 40 27 chr12 34867566 34867936 -109414553 - THE1C LTR MaLR 0 375 1 377 283 103 14 chr12 34867981 34868126 -109414363 - MIR SINE MIR 0 262 105 215 217 83 0 chr12 34869154 34869214 -109413275 + L2 LINE L2 3208 3272 0 262 324 65 0 chr12 34869414 34869522 -109412967 - MIR SINE MIR -75 187 73 5478 119 35 5 chr12 34869698 34870374 -109412115 + L1PB1 LINE L1 5087 5807 -344 192 77 0 0 chr12 34870374 34870400 -109412089 + (TA)n Simple_repeat Simple_repeat 2 27 0 5478 119 35 5 chr12 34870400 34870748 -109411741 + L1PB1 LINE L1 5807 6143 -8 35 54 0 0 chr12 34870864 34870920 -109411569 + AT_rich Low_complexity Low_complexity 1 56 0 370 310 39 8 chr12 34870944 34871073 -109411416 - MIR SINE MIR -71 191 59 407 200 11 22 chr12 34871414 34871504 -109410985 + MER21B LTR ERV1 1 89 -774 2057 243 104 20 chr12 34871530 34872192 -109410297 + MER21B LTR ERV1 21 738 -125 2183 141 0 0 chr12 34872893 34873205 -109409284 + AluSx SINE Alu 1 312 0 41209 51 2 6 chr12 34874652 34880829 -109401660 - L1PA6 LINE L1 -2 6152 2 9056 89 5 0 chr12 34880829 34882170 -109400319 + L1P LINE L1 1832 3178 -2968 229 287 195 0 chr12 34882212 34882299 -109400190 + L2 LINE L2 3121 3224 -48 21 36 0 0 chr12 34883362 34883390 -109399099 + AT_rich Low_complexity Low_complexity 1 28 0 36 40 0 0 chr12 34883842 34883892 -109398597 + AT_rich Low_complexity Low_complexity 1 50 0 319 305 80 32 chr12 34884187 34884436 -109398053 - MLT1K LTR MaLR 0 588 328 1083 190 55 3 chr12 34884595 34884884 -109397605 - MLT1B LTR MaLR 0 390 8 2126 120 7 0 chr12 34885206 34885498 -109396991 - AluSq SINE Alu -19 294 1 306 286 187 6 chr12 34886033 34886215 -109396274 + L1M4 LINE L1 2721 2935 -3211 482 241 26 26 chr12 34887805 34887921 -109394568 + L2 LINE L2 3197 3312 -1 435 351 78 38 chr12 34887976 34888346 -109394143 + L2 LINE L2 2593 2977 -337 236 246 0 0 chr12 34889138 34889195 -109393294 + MLT1L LTR MaLR 16 72 -543 2024 150 0 3 chr12 34890920 34891233 -109391256 - AluSq SINE Alu -1 312 1 915 277 153 22 chr12 34891897 34892175 -109390314 + L1MC4 LINE L1 7297 7537 -505 525 32 0 0 chr12 34892175 34892238 -109390251 + (CCAA)n Simple_repeat Simple_repeat 2 64 0 915 277 153 22 chr12 34892238 34892329 -109390160 + L1MC4 LINE L1 7537 7615 -427 403 84 0 28 chr12 34892329 34892400 -109390089 + (TG)n Simple_repeat Simple_repeat 2 70 0 915 277 153 22 chr12 34892400 34892675 -109389814 + L1MC4 LINE L1 7615 8027 -15 3994 222 26 1 chr12 34892782 34893741 -109388748 - L1MCa LINE L1 -3048 3378 2396 2227 147 25 13 chr12 34893743 34894153 -109388336 - L1MCa LINE L1 -4332 2094 1566 3290 92 15 0 chr12 34894153 34894610 -109387879 + L1PA13 LINE L1 5696 6159 -4 2227 147 25 13 chr12 34894610 34894634 -109387855 - L1MCa LINE L1 -4860 1566 1544 337 214 95 24 chr12 34894778 34894904 -109387585 + L1ME LINE L1 5636 5770 -351 699 254 75 44 chr12 34895556 34895808 -109386681 - MIR SINE MIR -1 261 2 246 306 97 45 chr12 34896184 34896318 -109386171 - L2 LINE L2 -4 3268 3128 359 363 23 35 chr12 34896491 34896750 -109385739 - L2 LINE L2 -212 3060 2805 21 0 0 0 chr12 34897025 34897046 -109385443 + AT_rich Low_complexity Low_complexity 1 21 0 198 266 65 57 chr12 34898147 34898271 -109384218 - L2 LINE L2 -344 2928 2804 258 319 0 0 chr12 34898938 34899007 -109383482 - L2 LINE L2 -218 3054 2986 333 238 35 91 chr12 34899730 34899762 -109382727 - MIR SINE MIR -10 252 220 1038 157 55 111 chr12 34899762 34900105 -109382384 + MER33 DNA MER1_type 1 324 0 333 238 35 91 chr12 34900105 34900215 -109382274 - MIR SINE MIR -42 220 118 2286 90 3 0 chr12 34902677 34902965 -109379524 + AluSg SINE Alu 1 289 -21 193 370 160 8 chr12 34902986 34903105 -109379384 + L2 LINE L2 3136 3272 0 321 333 48 61 chr12 34903921 34904300 -109378189 - L2 LINE L2 -3 3310 2937 2509 84 0 0 chr12 34905509 34905819 -109376670 - AluSx SINE Alu -2 310 1 26 30 0 0 chr12 34905916 34905949 -109376540 + AT_rich Low_complexity Low_complexity 1 33 0 25 51 0 0 chr12 34905998 34906037 -109376452 + AT_rich Low_complexity Low_complexity 1 39 0 2570 125 3 3 chr12 34906037 34906422 -109376067 - LTR9B LTR ERV1 -84 560 176 1668 167 32 3 chr12 34907480 34907762 -109374727 - AluSx SINE Alu -22 290 1 261 328 0 0 chr12 34909418 34909485 -109373004 - MIR SINE MIR -176 86 20 184 286 12 95 chr12 34909488 34909572 -109372917 - MIR SINE MIR -93 115 39 26 0 0 0 chr12 34909648 34909674 -109372815 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr12 34910008 34910043 -109372446 + AT_rich Low_complexity Low_complexity 1 35 0 422 314 101 29 chr12 34910047 34910423 -109372066 + L1MC4a LINE L1 5513 5915 -206 1648 132 0 0 chr12 34910751 34910978 -109371511 - AluJo SINE Alu -15 297 71 388 253 11 0 chr12 34911016 34911111 -109371378 - L1MC4 LINE L1 -600 7442 7347 * 652 229 221 12 chr12 34911107 34911356 -109371133 + L1MC4 LINE L1 7453 7753 -289 603 284 85 49 chr12 34911373 34911820 -109370669 - HAL1b LINE L1 -834 514 52 1842 178 37 8 chr12 34913498 34913853 -109368636 - MLT1A1 LTR MaLR 0 365 1 42882 51 0 1 chr12 34914145 34920290 -109362199 - L1PA4 LINE L1 -5 6150 13 956 106 47 0 chr12 34920288 34920458 -109362031 - L1PA8A LINE L1 -700 5431 5254 * 547 230 138 13 chr12 34920864 34921016 -109361473 - MIR SINE MIR -78 184 14 572 307 80 29 chr12 34921491 34921729 -109360760 + MIR SINE MIR 13 262 0 24 32 0 0 chr12 34922170 34922201 -109360288 + AT_rich Low_complexity Low_complexity 1 31 0 1940 260 60 54 chr12 34922357 34923460 -109359029 + L1ME3A LINE L1 4888 5983 -179 3148 127 51 6 chr12 34923460 34923949 -109358540 - MER9 LTR ERVK 0 511 1 1940 260 60 54 chr12 34923949 34924009 -109358480 + L1ME3A LINE L1 5983 6041 -121 3196 138 10 6 chr12 34924009 34924518 -109357971 - MER9 LTR ERVK 0 511 1 1940 260 60 54 chr12 34924518 34924618 -109357871 + L1ME3A LINE L1 6041 6125 -37 4241 85 21 11 chr12 34925283 34926304 -109356185 + MER11A LTR ERVK 1 1266 0 545 329 74 7 chr12 34927296 34927538 -109354951 + MIR SINE MIR 2 257 -5 375 301 106 20 chr12 34927533 34927732 -109354757 + MIR SINE MIR 42 257 -5 * 370 333 46 0 chr12 34927896 34928049 -109354440 + MIR SINE MIR 77 236 -26 950 18 0 0 chr12 34928087 34928197 -109354292 - L1PA3 LINE L1 0 6155 6046 2474 164 19 19 chr12 34929141 34929377 -109353112 + MSTB LTR MaLR 1 239 -187 1914 159 41 14 chr12 34929377 34929741 -109352748 + THE1C LTR MaLR 1 374 -1 2474 164 19 19 chr12 34929741 34929930 -109352559 + MSTB LTR MaLR 238 426 0 1952 87 0 8 chr12 34930492 34930746 -109351743 + AluSx SINE Alu 61 312 0 197 299 126 23 chr12 34930882 34930969 -109351520 + L2 LINE L2 3161 3256 -16 1570 226 7 0 chr12 34930980 34931325 -109351164 + AluJb SINE Alu 1 347 0 189 0 0 0 chr12 34931325 34931346 -109351143 + (GGGA)n Simple_repeat Simple_repeat 1 21 0 285 231 8 116 chr12 34931437 34931558 -109350931 - MER20 DNA MER1_type 0 219 112 292 280 115 27 chr12 34931756 34931915 -109350574 + MIR SINE MIR 21 188 -70 358 276 21 97 chr12 34932895 34933040 -109349449 - MER5B DNA MER1_type -24 154 21 325 260 133 44 chr12 34933645 34933826 -109348663 - L2 LINE L2 0 3272 3076 1700 185 0 7 chr12 34934326 34934613 -109347876 + AluSx SINE Alu 1 285 -27 189 268 118 39 chr12 34935423 34935550 -109346939 - L2 LINE L2 -947 2367 2231 28407 97 16 30 chr12 34936056 34938676 -109343813 + L1PA7 LINE L1 706 3363 -3106 255 31 0 0 chr12 34938676 34938708 -109343781 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 28407 97 16 30 chr12 34938708 34938838 -109343651 + L1PA7 LINE L1 3363 3493 -2976 387 0 0 0 chr12 34938838 34938881 -109343608 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 28407 97 16 30 chr12 34938881 34938893 -109343596 + L1PA7 LINE L1 3493 3504 -2965 4786 32 0 0 chr12 34938893 34939457 -109343032 - L1PA3 LINE L1 -3 6152 5589 28407 97 16 30 chr12 34939457 34942591 -109339898 + L1PA7 LINE L1 3504 6451 -18 549 246 0 0 chr12 34942612 34942738 -109339751 + L1M4 LINE L1 3445 3570 -2576 21 0 0 0 chr12 34942765 34942786 -109339703 + AT_rich Low_complexity Low_complexity 1 21 0 1023 183 11 0 chr12 34943279 34943454 -109339035 - AluJb SINE Alu -7 305 129 409 235 17 59 chr12 34943863 34943982 -109338507 - L2 LINE L2 -7 3306 3193 345 274 8 34 chr12 34944951 34945068 -109337421 - HsTC2 DNA Tc2 -1781 117 4 298 316 10 10 chr12 34945375 34945473 -109337016 - LTR67 LTR ERVL -368 189 92 325 307 79 0 chr12 34946440 34946567 -109335922 + MIR SINE MIR 45 181 -81 815 233 62 0 chr12 34947019 34947212 -109335277 + MIR SINE MIR 30 234 -28 596 223 66 0 chr12 34947403 34947622 -109334867 - FLAM_C SINE Alu 0 227 1 6580 27 3 0 chr12 34947711 34948482 -109334007 - L1PA3 LINE L1 -4 6151 5379 1876 164 0 3 chr12 34949106 34949398 -109333091 + AluJb SINE Alu 1 291 -21 475 317 112 41 chr12 34949401 34949839 -109332650 - MLT1K LTR MaLR -3 585 117 483 337 36 14 chr12 34949962 34950183 -109332306 - MIR SINE MIR -4 258 35 1078 171 0 0 chr12 34950183 34950347 -109332142 - AluJo/FRAM SINE Alu -15 297 134 2242 102 0 34 chr12 34950349 34950671 -109331818 - AluY SINE Alu 0 311 1 216 97 0 0 chr12 34950699 34950730 -109331759 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 400 329 46 0 chr12 34951531 34951747 -109330742 - MER112 DNA MER1_type -32 228 3 2088 89 31 7 chr12 34952533 34952824 -109329665 - AluSp SINE Alu -15 298 1 597 338 77 54 chr12 34952839 34953404 -109329085 - L2 LINE L2 -282 3031 2450 1395 66 5 30 chr12 34953534 34953732 -109328757 + AluY SINE Alu 104 296 -15 328 350 57 16 chr12 34953734 34953980 -109328509 - L1MCb LINE L1 -1404 5160 4905 21 57 0 0 chr12 34956500 34956535 -109325954 + AT_rich Low_complexity Low_complexity 1 35 0 230 294 0 0 chr12 34958648 34958733 -109323756 + L1MC4 LINE L1 6618 6702 -1340 276 207 17 0 chr12 34959193 34959251 -109323238 - MER103 DNA DNA -95 71 13 558 358 73 55 chr12 34959431 34959976 -109322513 - LTR67 LTR ERVL 0 557 3 572 332 61 16 chr12 34959992 34960305 -109322184 - MLT1L LTR MaLR -92 523 197 5616 236 54 9 chr12 34960531 34962231 -109320258 - L1MCb LINE L1 -1916 4648 2872 683 176 0 0 chr12 34962235 34962343 -109320146 - FLAM_C SINE Alu -35 108 1 4169 209 108 56 chr12 34962343 34962638 -109319851 - L1MCb LINE L1 -3818 2746 2468 1666 111 0 8 chr12 34962638 34962873 -109319616 - AluSc SINE Alu -6 303 71 5044 28 0 44 chr12 34962878 34963517 -109318972 - L1PA4 LINE L1 -8 6147 5537 534 83 0 0 chr12 34963517 34963589 -109318900 - AluSc SINE Alu -237 72 1 4169 209 108 56 chr12 34963589 34965084 -109317405 - L1MCb LINE L1 -4098 2466 777 21 36 0 0 chr12 34965094 34965122 -109317367 + AT_rich Low_complexity Low_complexity 1 28 0 861 206 33 5 chr12 34965134 34965318 -109317171 - L1MCb LINE L1 -6221 343 155 1950 193 71 106 chr12 34966104 34966808 -109315681 - MER61E LTR ERV1 -4 750 3 1836 225 113 19 chr12 34966808 34967074 -109315415 - L1MD3 LINE L1 -31 7964 7724 1946 153 0 13 chr12 34967074 34967375 -109315114 - AluSx SINE Alu -15 297 1 1836 225 113 19 chr12 34967375 34967677 -109314812 - L1MD3 LINE L1 -271 7724 7343 535 281 47 8 chr12 34968848 34968976 -109313513 - L2 LINE L2 -4 3268 3136 261 0 0 0 chr12 34969002 34969031 -109313458 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2487 182 66 71 chr12 34969031 34969727 -109312762 + LTR34 LTR ERV1 8 695 -4 613 279 60 0 chr12 34969744 34969945 -109312544 - L2 LINE L2 -174 3139 2927 539 294 172 11 chr12 34969935 34970214 -109312275 - L2 LINE L2 -529 2785 2462 * 584 60 24 0 chr12 34971848 34971931 -109310558 - L1PA7 LINE L1 0 6154 6070 707 66 38 0 chr12 34971940 34972046 -109310443 - L1P LINE L1 -789 5357 5248 234 150 0 0 chr12 34972280 34972320 -109310169 + (T)n Simple_repeat Simple_repeat 1 40 0 995 196 12 0 chr12 34972873 34973041 -109309448 + MER5A DNA MER1_type 2 171 -18 497 219 123 0 chr12 34973166 34973280 -109309209 + FLAM_C SINE Alu 1 128 -5 2288 145 5 3 chr12 34973336 34973709 -109308780 + L1PA16 LINE L1 5792 6165 -1 358 304 74 19 chr12 34974748 34975005 -109307484 + L1MEc LINE L1 1709 1979 -4417 1846 234 43 28 chr12 34975052 34975518 -109306971 + MLT1D LTR MaLR 5 477 -28 295 73 0 0 chr12 34975559 34975600 -109306889 + MLT1D LTR MaLR 465 505 0 298 218 9 9 chr12 34975893 34976003 -109306486 + L1MEc LINE L1 2126 2235 -3980 * 714 306 102 23 chr12 34975971 34976530 -109305959 + L1MEc LINE L1 2504 3106 -3109 1159 295 63 10 chr12 34976546 34977149 -109305340 + L1MEc LINE L1 3184 3818 -2397 336 268 8 16 chr12 34977147 34977168 -109305321 - L1MA4A LINE L1 0 6303 6283 * 7975 181 34 30 chr12 34977168 34978149 -109304340 - L1PB4 LINE L1 -2 6154 5178 2152 178 41 24 chr12 34978149 34978524 -109303965 + MSTB LTR MaLR 3 370 -56 2032 119 7 10 chr12 34978524 34978834 -109303655 - AluSc SINE Alu 0 309 1 2040 122 3 14 chr12 34978834 34979130 -109303359 - AluSc SINE Alu -16 293 1 2152 178 41 24 chr12 34979130 34979170 -109303319 + MSTB LTR MaLR 369 426 0 7975 181 34 30 chr12 34979170 34980868 -109301621 - L1PB4 LINE L1 -978 5178 3460 * 28423 106 14 63 chr12 34980858 34985778 -109296711 - L1PA3 LINE L1 -257 6213 1565 4893 81 136 22 chr12 34985778 34986516 -109295973 + LTR12 LTR ERV1 1 822 -4 28423 106 14 63 chr12 34986516 34987716 -109294773 - L1PA3 LINE L1 -4905 1565 308 894 197 39 0 chr12 34987716 34987894 -109294595 - MLT2B3 LTR ERVL -369 185 1 2296 225 76 42 chr12 34987899 34988283 -109294206 + L1ME2 LINE L1 5185 5554 -610 2357 85 0 3 chr12 34988283 34988577 -109293912 - AluY SINE Alu -18 293 1 2296 225 76 42 chr12 34988577 34989086 -109293403 + L1ME2 LINE L1 5554 6093 -71 1968 160 9 6 chr12 34989765 34990231 -109292258 - MER44D DNA MER2_type -1 604 2 468 261 54 9 chr12 34990443 34990554 -109291935 + FLAM_A SINE Alu 1 116 -17 26 50 0 0 chr12 34991365 34991405 -109291084 + AT_rich Low_complexity Low_complexity 1 40 0 268 287 64 0 chr12 34991722 34991816 -109290673 - MIR3 SINE MIR -8 200 101 180 0 0 0 chr12 34992666 34992686 -109289803 + (T)n Simple_repeat Simple_repeat 1 20 0 295 215 0 0 chr12 34993369 34993434 -109289055 - L1MD3 LINE L1 -8 7987 7923 21 36 0 0 chr12 34993434 34993462 -109289027 + AT_rich Low_complexity Low_complexity 1 28 0 455 233 0 9 chr12 34993466 34993582 -109288907 - L1MC4 LINE L1 -177 7865 7751 2444 76 0 3 chr12 34993621 34993923 -109288566 + AluY SINE Alu 1 301 -10 420 289 71 83 chr12 34993984 34994379 -109288110 - L1 LINE L1 -3547 2599 2210 1996 104 3 17 chr12 34994418 34994707 -109287782 - THE1C LTR MaLR -90 285 1 2051 130 3 0 chr12 34994988 34995281 -109287208 - AluSx SINE Alu -18 294 1 236 182 0 130 chr12 34995292 34995369 -109287120 - HAL1b LINE L1 -614 734 668 230 336 34 57 chr12 34995493 34995931 -109286558 - HAL1b LINE L1 -865 483 56 207 0 0 0 chr12 34996343 34996366 -109286123 + (T)n Simple_repeat Simple_repeat 1 23 0 1998 89 0 4 chr12 34997013 34997271 -109285218 - AluSq SINE Alu -16 297 41 21 0 0 0 chr12 34997430 34997451 -109285038 + AT_rich Low_complexity Low_complexity 1 21 0 233 180 45 126 chr12 34997470 34997581 -109284908 + MIR SINE MIR 96 197 -65 1982 223 47 27 chr12 34998068 34998734 -109283755 + L1M3f LINE L1 728 1730 -4094 824 261 0 5 chr12 34998897 34999092 -109283397 + L1M3f LINE L1 2683 2876 -3452 6602 108 8 6 chr12 34999092 35000088 -109282401 - L1MA3 LINE L1 0 6305 5308 4143 210 42 19 chr12 35000088 35001175 -109281314 + L1M3f LINE L1 2857 3968 -2360 2422 39 4 0 chr12 35001503 35001784 -109280705 - AluY SINE Alu -26 285 4 180 111 0 0 chr12 35001884 35001911 -109280578 + (CA)n Simple_repeat Simple_repeat 2 28 0 325 282 154 48 chr12 35002190 35002520 -109279969 - L1M4 LINE L1 -759 5387 5023 20263 175 20 15 chr12 35002901 35008192 -109274297 - L1PA13 LINE L1 -4 6810 1404 4460 237 130 7 chr12 35008260 35009352 -109273137 - L1PA13 LINE L1 -5560 1227 2 416 281 84 76 chr12 35009823 35010190 -109272299 + LTR16B LTR ERVL 1 370 -94 195 42 0 0 chr12 35010242 35010266 -109272223 + (CA)n Simple_repeat Simple_repeat 1 24 0 4016 142 41 14 chr12 35010396 35011085 -109271404 + MER39 LTR ERV1 1 707 0 23 68 0 0 chr12 35011098 35011142 -109271347 + AT_rich Low_complexity Low_complexity 1 44 0 22 80 0 0 chr12 35011188 35011238 -109271251 + AT_rich Low_complexity Low_complexity 1 50 0 414 175 135 56 chr12 35011238 35011364 -109271125 - MER96B DNA MER1_type? -281 136 1 269 313 175 32 chr12 35011526 35011743 -109270746 + L2 LINE L2 2804 3051 -221 183 80 0 0 chr12 35012086 35012111 -109270378 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 268 226 0 0 chr12 35012976 35013029 -109269460 - MIR3 SINE MIR -6 202 150 43641 42 3 2 chr12 35013345 35019495 -109262994 + L1PA3 LINE L1 3 6155 0 1712 188 7 3 chr12 35020499 35020808 -109261681 - AluJb SINE Alu -2 310 1 28 29 0 0 chr12 35021186 35021221 -109261268 + AT_rich Low_complexity Low_complexity 1 35 0 630 319 89 5 chr12 35021913 35022126 -109260363 + L3 LINE CR1 1309 1539 -38 284 284 74 32 chr12 35022346 35022441 -109260048 + L2 LINE L2 3137 3235 -37 261 266 165 37 chr12 35022530 35022639 -109259850 - MIR SINE MIR -96 166 44 2504 157 19 5 chr12 35022742 35023162 -109259327 + MSTB LTR MaLR 1 426 0 831 303 79 39 chr12 35024358 35024800 -109257689 + MLT1G LTR MaLR 113 572 -18 869 184 85 72 chr12 35025583 35025806 -109256683 - MLT2D LTR ERVL -5 409 184 833 164 0 7 chr12 35025889 35026029 -109256460 + MLT1A1 LTR MaLR 227 365 0 1026 140 135 5 chr12 35026031 35026231 -109256258 + MSTA LTR MaLR 1 226 -202 1873 73 0 0 chr12 35026231 35026465 -109256024 - LTR12 LTR ERV1 -2 712 479 4728 124 80 19 chr12 35026465 35027241 -109255248 - LTR12 LTR ERV1 -3 823 1 844 135 25 55 chr12 35027242 35027405 -109255084 + MSTA LTR MaLR 207 364 0 664 245 123 55 chr12 35027460 35028328 -109254161 - HAL1 LINE L1 -114 2393 1390 249 105 0 0 chr12 35028333 35028371 -109254118 + MER4D LTR ERV1 284 321 -582 7701 21 1 0 chr12 35028371 35029840 -109252649 - L1PA3 LINE L1 0 6155 4684 11287 31 20 0 chr12 35029841 35031209 -109251280 + L1PA3 LINE L1 3283 4677 -1469 2444 170 50 61 chr12 35031210 35031787 -109250702 + LTR49 LTR ERV1 25 595 0 1103 276 75 63 chr12 35031904 35032076 -109250413 - HAL1 LINE L1 -1254 1253 1085 2260 102 3 0 chr12 35032076 35032369 -109250120 - AluSp SINE Alu -18 295 2 1103 276 75 63 chr12 35032369 35032867 -109249622 - HAL1 LINE L1 -1422 1085 575 5109 142 161 20 chr12 35033725 35034684 -109247805 - Tigger3b DNA MER2_type -1810 1218 92 4533 64 87 0 chr12 35034684 35035291 -109247198 - PABL_A LTR ERV1 0 660 1 5109 142 161 20 chr12 35035291 35035398 -109247091 - Tigger3b DNA MER2_type -2936 92 1 1786 186 3 0 chr12 35035515 35035816 -109246673 + AluJo SINE Alu 1 302 -10 1008 296 21 0 chr12 35036309 35036552 -109245937 - MIR SINE MIR -12 250 3 2341 115 0 0 chr12 35036878 35037190 -109245299 + AluSx SINE Alu 1 312 0 2283 113 43 61 chr12 35037640 35038082 -109244407 + LTR23 LTR ERV1 4 437 0 1747 162 3 0 chr12 35038587 35038871 -109243618 + MER34C LTR ERV1 12 296 -289 363 301 124 13 chr12 35038881 35039034 -109243455 + MIR SINE MIR 82 251 -11 1042 231 143 128 chr12 35039439 35039767 -109242722 - MER50 LTR ERV1 0 734 413 468 180 0 0 chr12 35039767 35039856 -109242633 - L1PA11 LINE L1 -4 6170 6082 1042 231 143 128 chr12 35039856 35040241 -109242248 - MER50 LTR ERV1 -321 413 10 290 291 71 40 chr12 35040250 35040432 -109242057 + MIR SINE MIR 2 184 -63 3046 147 16 8 chr12 35040454 35040956 -109241533 - MER84 LTR ERV1 0 507 2 475 122 14 14 chr12 35040956 35041030 -109241459 - MER84 LTR ERVI -433 74 1 180 283 65 0 chr12 35041034 35041080 -109241409 + MIR SINE MIR 210 258 -4 1451 217 102 28 chr12 35041412 35042048 -109240441 + LTR48 LTR ERV1 17 787 0 1007 107 13 7 chr12 35042387 35042536 -109239953 - AluY SINE Alu -4 307 158 302 358 16 24 chr12 35042627 35042741 -109239748 + MIR SINE MIR 32 145 -73 3149 113 0 13 chr12 35042741 35043211 -109239278 - MER4C LTR ERV1 0 465 2 2103 161 8 31 chr12 35044274 35044658 -109237831 + THE1C LTR MaLR 1 375 0 9254 121 35 43 chr12 35044658 35045136 -109237353 + THE1C-int LTR MaLR 1 481 -1099 2269 97 3 3 chr12 35045136 35045436 -109237053 + AluY SINE Alu 1 300 -11 9254 121 35 43 chr12 35045436 35046550 -109235939 + THE1C-int LTR MaLR 481 1580 0 2395 133 8 11 chr12 35046550 35046926 -109235563 + THE1C LTR MaLR 1 375 0 1666 181 25 54 chr12 35047345 35047391 -109235098 - MLT2C1 LTR ERVL -1 396 350 387 0 0 0 chr12 35047391 35047434 -109235055 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1666 181 25 54 chr12 35047434 35047795 -109234694 - MLT2C1 LTR ERVL -47 350 1 210 271 29 57 chr12 35048153 35048223 -109234266 - L2 LINE L2 -18 3254 3187 217 293 49 57 chr12 35048293 35048416 -109234073 - L2 LINE L2 -185 3087 2966 180 111 0 0 chr12 35049397 35049424 -109233065 + (TG)n Simple_repeat Simple_repeat 2 28 0 1042 198 30 128 chr12 35049697 35050102 -109232387 + MLT1A1 LTR MaLR 1 365 0 1039 119 6 6 chr12 35050171 35050200 -109232289 + (TTCC)n Simple_repeat Simple_repeat 1 206 0 1039 119 6 6 chr12 35050200 35050377 -109232112 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 758 269 56 0 chr12 35050537 35050734 -109231755 - MIR SINE MIR -6 256 49 2091 157 22 37 chr12 35053837 35054246 -109228243 + L1MA6 LINE L1 5633 6035 -265 834 119 45 0 chr12 35054255 35054389 -109228100 - Tigger1 DNA MER2_type -7 2411 2272 1090 237 88 10 chr12 35054408 35054716 -109227773 + LTR40b LTR ERVL 124 455 -7 628 235 0 0 chr12 35055242 35055357 -109227132 + FLAM_A SINE Alu 2 116 -17 3727 45 0 6 chr12 35055595 35055615 -109226874 + L1P LINE L1 4541 4560 -1586 225 0 0 0 chr12 35055615 35055640 -109226849 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 7466 25 5 0 chr12 35055640 35056765 -109225724 - L1PA3 LINE L1 -10 6145 5012 3727 45 0 6 chr12 35056765 35057232 -109225257 + L1P LINE L1 4558 5026 -1120 1557 145 74 26 chr12 35058211 35058502 -109223987 + AluJo SINE Alu 1 304 0 22 0 0 0 chr12 35059124 35059146 -109223343 + AT_rich Low_complexity Low_complexity 1 22 0 343 279 183 14 chr12 35059557 35059776 -109222713 + MIR SINE MIR 3 258 -4 256 287 93 0 chr12 35060122 35060230 -109222259 + HAL1 LINE L1 6 123 -2384 * 4070 252 68 47 chr12 35060220 35061100 -109221389 + L1MDa LINE L1 3 863 -5677 1588 176 33 19 chr12 35061100 35061407 -109221082 - AluJb SINE Alu -1 311 1 4070 252 68 47 chr12 35061407 35061442 -109221047 + L1MDa LINE L1 863 896 -5644 2668 188 40 4 chr12 35061442 35061943 -109220546 + LTR53 LTR ERVL 1 519 0 4070 252 68 47 chr12 35061943 35062490 -109219999 + L1MDa LINE L1 896 1496 -5044 1734 192 29 39 chr12 35062491 35063162 -109219327 + L1MC/D LINE L1 4964 5629 -730 290 296 28 19 chr12 35063169 35063277 -109219212 - MER87 LTR ERV1 0 541 433 699 209 17 17 chr12 35063643 35063815 -109218674 + L1MC/D LINE L1 5630 5801 -558 268 322 11 22 chr12 35064137 35064227 -109218262 - MIR SINE MIR -165 97 9 771 233 83 92 chr12 35065053 35065595 -109216894 - MER34 LTR ERV1 -5 537 1 3456 80 4 2 chr12 35065793 35066245 -109216244 - MLT2A2 LTR ERVL 0 453 1 2639 173 31 68 chr12 35066481 35067080 -109215409 + LTR9 LTR ERV1 1 577 -35 5680 151 20 31 chr12 35067080 35068163 -109214326 - MER11C LTR ERVK 0 1071 1 2639 173 31 68 chr12 35068163 35068198 -109214291 + LTR9 LTR ERV1 577 612 0 2107 122 0 32 chr12 35068499 35068810 -109213679 + AluSx SINE Alu 3 303 -9 491 224 26 9 chr12 35068998 35069114 -109213375 - LTR52 LTR ERVL -37 384 267 472 242 46 20 chr12 35069151 35069304 -109213185 - LTR52 LTR ERVL -256 165 9 2379 97 0 0 chr12 35069361 35069659 -109212830 + AluSc SINE Alu 1 298 -11 21 0 0 0 chr12 35069829 35069850 -109212639 + AT_rich Low_complexity Low_complexity 1 21 0 410 261 0 0 chr12 35070276 35070364 -109212125 + MER58 DNA MER1_type 12 99 -242 511 184 0 19 chr12 35070376 35070479 -109212010 + MER58 DNA MER1_type 2318 2418 -2 251 367 44 0 chr12 35073514 35073694 -109208795 + L1ME LINE L1 5376 5563 -603 322 258 58 65 chr12 35074528 35074683 -109207806 - L2 LINE L2 0 3313 3160 251 204 57 34 chr12 35074786 35074874 -109207615 - L1ME3A LINE L1 -158 6012 5923 914 314 33 18 chr12 35074918 35075374 -109207115 + ERVL LTR ERVL 2454 2916 -2848 801 253 84 4 chr12 35075958 35076207 -109206282 + ERVL LTR ERVL 4780 5048 -716 2430 187 41 98 chr12 35076223 35076950 -109205539 + LTR8A LTR ERV1 34 719 -8 561 279 32 59 chr12 35076954 35077321 -109205168 + ERVL LTR ERVL 5042 5364 -290 1024 307 79 31 chr12 35077594 35078033 -109204456 - L2 LINE L2 0 3313 2845 279 0 0 0 chr12 35078033 35078064 -109204425 + (TG)n Simple_repeat Simple_repeat 1 31 0 1024 307 79 31 chr12 35078064 35078142 -109204347 - L2 LINE L2 -468 2845 2772 1420 251 33 20 chr12 35078728 35079119 -109203370 - MSTD LTR MaLR 0 396 1 23 0 0 0 chr12 35079957 35079980 -109202509 + AT_rich Low_complexity Low_complexity 1 23 0 1357 240 9 76 chr12 35080181 35080631 -109201858 - LTR40a LTR ERVL 0 519 100 1034 129 8 98 chr12 35080688 35080744 -109201745 - L1MA7 LINE L1 -138 6153 6094 1953 153 143 11 chr12 35080744 35081122 -109201367 + MSTC LTR MaLR 1 428 0 1034 129 8 98 chr12 35081122 35081321 -109201168 - L1MA7 LINE L1 -197 6094 5921 4888 183 25 17 chr12 35082258 35083237 -109199252 + L1M1 LINE L1 626 1611 -5954 * 6403 117 24 5 chr12 35083220 35084296 -109198193 + L1M1 LINE L1 2198 3294 -4271 2390 18 7 4 chr12 35084858 35085138 -109197351 + AluY SINE Alu 1 281 -30 592 337 129 5 chr12 35085204 35085575 -109196914 + L2 LINE L2 2897 3313 0 1467 201 52 4 chr12 35085582 35085851 -109196638 + AluJo SINE Alu 1 282 -30 9803 81 13 4 chr12 35086161 35087860 -109194629 + L1P3 LINE L1 3939 5650 -504 364 319 59 25 chr12 35088568 35088687 -109193802 + L2 LINE L2 3142 3264 -8 887 183 6 0 chr12 35088970 35089145 -109193344 - L1MB1 LINE L1 -2 6166 5991 3761 158 112 7 chr12 35089745 35090492 -109191997 - LTR1B LTR ERV1 0 826 1 701 274 118 14 chr12 35090622 35090910 -109191579 - LTR36 LTR ERV1 0 611 294 392 222 30 36 chr12 35091455 35091622 -109190867 - LTR36 LTR ERV1 -445 166 1 4107 90 10 89 chr12 35091989 35092710 -109189779 - MER4A LTR ERV1 0 664 1 217 103 15 59 chr12 35092751 35092819 -109189670 + (TTC)n Simple_repeat Simple_repeat 2 66 0 254 257 27 0 chr12 35093577 35093651 -109188838 - L1MC4 LINE L1 -140 7902 7827 551 277 113 0 chr12 35094651 35094828 -109187661 + MER102b DNA MER1_type 135 331 -10 182 133 0 22 chr12 35095270 35095315 -109187174 + (GGGTG)n Simple_repeat Simple_repeat 3 46 0 221 179 19 75 chr12 35095452 35095558 -109186931 + G-rich Low_complexity Low_complexity 5 104 0 210 150 0 0 chr12 35095563 35095603 -109186886 + (G)n Simple_repeat Simple_repeat 1 40 0 221 170 19 94 chr12 35095614 35095720 -109186769 + (GGGTG)n Simple_repeat Simple_repeat 1 98 0 3288 11 0 0 chr12 35095863 35096232 -109186257 - L1PA3 LINE L1 -150 6005 5637 3014 193 39 15 chr12 35096232 35096850 -109185639 - LTR48B LTR ERV1 -11 633 1 385 332 21 58 chr12 35097091 35097281 -109185208 + MIR SINE MIR 2 184 -78 1316 121 109 4 chr12 35097553 35097792 -109184697 + MER21A LTR ERV1 1 264 -667 3189 131 35 36 chr12 35097797 35098348 -109184141 + MER21A LTR ERV1 376 925 -6 2550 148 34 5 chr12 35100009 35100422 -109182067 - MSTB LTR MaLR 0 426 2 279 315 9 0 chr12 35102233 35102341 -109180148 + GA-rich Low_complexity Low_complexity 2 110 0 1474 189 27 76 chr12 35102404 35102811 -109179678 + MLT1B LTR MaLR 4 390 0 435 274 11 0 chr12 35103894 35103989 -109178500 + MER20B DNA MER1_type 101 196 -587 26 0 0 0 chr12 35103993 35104019 -109178470 + AT_rich Low_complexity Low_complexity 1 26 0 5320 155 33 13 chr12 35104025 35105323 -109177166 - L1MA8 LINE L1 -15 6276 4954 266 351 157 36 chr12 35106175 35106423 -109176066 + L2 LINE L2 156 433 -2881 267 259 80 62 chr12 35106770 35106882 -109175607 + L2 LINE L2 2276 2389 -925 596 98 0 43 chr12 35106883 35106999 -109175490 + FRAM SINE Alu 59 170 0 449 204 0 0 chr12 35107676 35107764 -109174725 + L2 LINE L2 818 905 -2409 694 332 35 14 chr12 35107781 35108064 -109174425 + L2 LINE L2 1145 1433 -1881 377 289 35 0 chr12 35108067 35108181 -109174308 - L2 LINE L2 -1621 1693 1576 21 0 0 0 chr12 35108571 35108592 -109173897 + AT_rich Low_complexity Low_complexity 1 21 0 340 374 24 15 chr12 35108828 35109034 -109173455 - HAL1b LINE L1 -659 689 482 1182 198 132 40 chr12 35109286 35109559 -109172930 + AluJo SINE Alu 1 298 -4 22 0 0 0 chr12 35109778 35109800 -109172689 + AT_rich Low_complexity Low_complexity 1 22 0 1518 102 5 0 chr12 35110031 35110227 -109172262 - AluSp SINE Alu -16 297 101 600 60 12 12 chr12 35110776 35110860 -109171629 + AluY SINE Alu 217 300 -11 903 136 19 19 chr12 35110959 35111114 -109171375 + AluSg/x SINE Alu 147 301 -11 2608 201 68 28 chr12 35111231 35111719 -109170770 - L1MB8 LINE L1 0 6178 5711 2213 164 6 0 chr12 35111719 35112054 -109170435 + MER1B DNA MER1_type 1 337 0 2608 201 68 28 chr12 35112054 35112890 -109169599 - L1MB8 LINE L1 -467 5711 4758 2111 134 3 3 chr12 35113049 35113354 -109169135 + AluSx SINE Alu 1 305 -7 602 326 61 13 chr12 35113364 35113998 -109168491 - L1ME3A LINE L1 -310 5860 5194 995 127 16 42 chr12 35114003 35114192 -109168297 - FRAM SINE Alu 0 176 1 332 235 73 62 chr12 35114568 35114747 -109167742 - L1ME3A LINE L1 -1353 4793 4613 516 258 55 0 chr12 35114908 35115071 -109167418 - L1M4 LINE L1 -1063 5083 4912 286 356 80 16 chr12 35115737 35115925 -109166564 + MIR SINE MIR 24 223 -39 266 299 120 48 chr12 35116009 35116086 -109166403 + MIR SINE MIR 64 134 -128 2497 57 3 0 chr12 35116086 35116386 -109166103 + AluY SINE Alu 1 301 -10 266 299 120 48 chr12 35116386 35116475 -109166014 + MIR SINE MIR 134 242 -20 189 205 51 0 chr12 35116445 35116484 -109166005 + L2 LINE L2 3217 3257 -15 * 249 230 158 65 chr12 35117458 35117753 -109164736 + L1ME LINE L1 5270 5555 -607 213 88 0 0 chr12 35117898 35117909 -109164580 + (TA)n Simple_repeat Simple_repeat 2 12 -23 2365 82 0 25 chr12 35117909 35118224 -109164265 - AluSq SINE Alu -6 307 1 213 88 0 0 chr12 35118224 35118246 -109164243 + (TA)n Simple_repeat Simple_repeat 11 35 0 1331 52 0 0 chr12 35125110 35125265 -109157224 - AluSq SINE Alu -77 236 82 2528 77 0 0 chr12 35125487 35125798 -109156691 - AluSq SINE Alu 0 313 3 387 119 0 0 chr12 35126689 35126756 -109155733 + (TG)n Simple_repeat Simple_repeat 2 68 0 252 300 11 44 chr12 35127095 35127185 -109155304 - MIR SINE MIR -141 121 35 279 0 0 0 chr12 35127423 35127454 -109155035 + (A)n Simple_repeat Simple_repeat 1 31 0 680 229 75 54 chr12 35128446 35128686 -109153803 - MIR SINE MIR 0 262 18 25 0 0 0 chr12 35129091 35129116 -109153373 + AT_rich Low_complexity Low_complexity 1 25 0 277 316 25 0 chr12 35129784 35129863 -109152626 - MIR SINE MIR -67 141 61 28 0 0 0 chr12 35131425 35131453 -109151036 + AT_rich Low_complexity Low_complexity 1 28 0 363 281 66 31 chr12 35132022 35132218 -109150271 - L1MC4a LINE L1 -1794 6014 5812 24 0 0 0 chr12 35132537 35132561 -109149928 + AT_rich Low_complexity Low_complexity 1 24 0 879 292 106 43 chr12 35133322 35133812 -109148677 + L2 LINE L2 2281 2801 -513 445 213 0 87 chr12 35133826 35133901 -109148588 - MER94 DNA DNA -14 120 59 1525 138 63 0 chr12 35133901 35134140 -109148349 - AluSx SINE Alu -20 292 39 445 213 0 87 chr12 35134140 35134191 -109148298 - MER94 DNA DNA -75 59 5 640 328 95 39 chr12 35134203 35134287 -109148202 + L2 LINE L2 2805 2883 -430 201 74 0 0 chr12 35134287 35134314 -109148175 + (TG)n Simple_repeat Simple_repeat 2 28 0 640 328 95 39 chr12 35134314 35134711 -109147778 + L2 LINE L2 2883 3313 0 350 359 81 31 chr12 35135093 35135316 -109147173 + MIR SINE MIR 4 237 -25 338 305 0 0 chr12 35135322 35135404 -109147085 + L2 LINE L2 3186 3267 -5 1745 142 29 7 chr12 35135617 35135892 -109146597 - AluJb SINE Alu -12 300 20 222 363 105 11 chr12 35137115 35137305 -109145184 + MIR SINE MIR 7 214 -48 390 286 36 0 chr12 35137815 35137927 -109144562 + MIR3 SINE MIR 87 202 -6 25 0 0 0 chr12 35138438 35138463 -109144026 + AT_rich Low_complexity Low_complexity 1 25 0 223 304 0 0 chr12 35138496 35138552 -109143937 + (TA)n Simple_repeat Simple_repeat 1 56 0 309 319 43 35 chr12 35138577 35138693 -109143796 - L2 LINE L2 0 3272 3156 205 138 0 0 chr12 35138691 35138720 -109143769 + MIR SINE MIR 82 110 -152 * 2173 114 13 0 chr12 35138796 35139104 -109143385 - AluSx SINE Alu 0 312 1 231 88 0 0 chr12 35139107 35139141 -109143348 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 389 71 0 214 chr12 35140819 35140917 -109141572 - MADE1 DNA Mariner -1 79 3 628 308 88 12 chr12 35141427 35141886 -109140603 + L2 LINE L2 2645 3310 -3 394 363 19 0 chr12 35142440 35142597 -109139892 - MIR SINE MIR -50 212 53 2283 82 3 3 chr12 35142679 35142983 -109139506 + AluY SINE Alu 4 307 -4 183 352 0 19 chr12 35143365 35143419 -109139070 + L2 LINE L2 2087 2139 -1175 415 343 73 11 chr12 35143794 35143972 -109138517 + MIR3 SINE MIR 18 206 -2 21 36 0 0 chr12 35144361 35144389 -109138100 + AT_rich Low_complexity Low_complexity 1 28 0 1760 64 176 0 chr12 35144557 35144807 -109137682 - AluSc SINE Alu -5 294 1 691 230 64 5 chr12 35145056 35145260 -109137229 - LTR33 LTR ERVL -1 520 305 189 336 124 25 chr12 35145605 35145846 -109136643 - L2 LINE L2 -179 3093 2829 2391 86 0 0 chr12 35146101 35146404 -109136085 + AluY SINE Alu 1 303 -8 486 284 80 38 chr12 35146623 35146862 -109135627 - MIR SINE MIR -12 250 2 21 0 0 0 chr12 35147631 35147652 -109134837 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr12 35148161 35148194 -109134295 + AT_rich Low_complexity Low_complexity 1 33 0 2073 125 3 7 chr12 35148612 35148909 -109133580 + AluSx SINE Alu 1 296 -16 22 70 0 0 chr12 35149390 35149433 -109133056 + AT_rich Low_complexity Low_complexity 1 43 0 246 276 209 22 chr12 35149702 35149836 -109132653 - L2 LINE L2 -7 3265 3107 22 70 0 0 chr12 35151035 35151078 -109131411 + AT_rich Low_complexity Low_complexity 1 43 0 2038 123 7 13 chr12 35151106 35151407 -109131082 - AluSx SINE Alu -13 299 1 859 164 6 18 chr12 35151959 35152124 -109130365 + MLT1D LTR MaLR 1 163 -342 572 184 95 89 chr12 35152126 35152254 -109130235 + MLT1D LTR MaLR 287 418 -87 2285 100 0 10 chr12 35152254 35152564 -109129925 - AluSg SINE Alu -3 307 1 572 184 95 89 chr12 35152564 35152625 -109129864 + MLT1D LTR MaLR 418 477 -28 259 128 256 0 chr12 35152659 35152737 -109129752 + MLT1D LTR MaLR 408 505 0 23 33 0 0 chr12 35152758 35152788 -109129701 + AT_rich Low_complexity Low_complexity 1 30 0 249 231 138 0 chr12 35153014 35153079 -109129410 + L2 LINE L2 3239 3312 -1 23 0 0 0 chr12 35153389 35153412 -109129077 + AT_rich Low_complexity Low_complexity 1 23 0 329 294 91 21 chr12 35153692 35153835 -109128654 + L1ME4a LINE L1 5628 5780 -341 274 264 108 7 chr12 35153923 35154071 -109128418 + L1ME4a LINE L1 5956 6118 -3 1851 176 0 13 chr12 35155469 35155782 -109126707 - AluJo SINE Alu -3 309 1 1994 136 0 0 chr12 35157094 35157374 -109125115 - AluSx SINE Alu -17 295 16 1902 62 0 8 chr12 35157382 35157623 -109124866 - AluY SINE Alu -8 303 65 446 272 200 56 chr12 35157623 35157935 -109124554 + L3 LINE CR1 1113 1473 -104 22 0 0 0 chr12 35158683 35158705 -109123784 + AT_rich Low_complexity Low_complexity 1 22 0 651 306 77 5 chr12 35158802 35159024 -109123465 - MIR SINE MIR -20 242 5 209 261 43 33 chr12 35159373 35159465 -109123024 - L2 LINE L2 -1905 1409 1317 2242 153 20 52 chr12 35159465 35159907 -109122582 + MSTC LTR MaLR 1 426 0 1134 312 40 3 chr12 35159945 35160291 -109122198 - L2 LINE L2 -2047 1267 909 2551 266 109 25 chr12 35160301 35161294 -109121195 + L2 LINE L2 1705 2780 -534 689 323 130 22 chr12 35161346 35161715 -109120774 + L2 LINE L2 2904 3312 -1 328 200 0 0 chr12 35161917 35161972 -109120517 - tRNA-Met-e tRNA tRNA -20 55 1 1531 173 0 18 chr12 35162745 35163022 -109119467 + AluJo SINE Alu 40 311 -1 200 333 22 52 chr12 35164209 35164344 -109118145 - L2 LINE L2 -309 2963 2833 314 143 16 0 chr12 35165644 35165707 -109116782 + (TG)n Simple_repeat Simple_repeat 2 65 0 458 272 66 15 chr12 35166138 35166274 -109116215 + MIR SINE MIR 44 186 -76 33 73 0 0 chr12 35167049 35167117 -109115372 + AT_rich Low_complexity Low_complexity 1 68 0 402 21 0 0 chr12 35168402 35168449 -109114040 + (CA)n Simple_repeat Simple_repeat 1 47 0 1235 171 18 13 chr12 35169435 35169663 -109112826 + MLT1A1 LTR MaLR 1 229 -136 298 343 74 23 chr12 35170222 35170438 -109112051 - L2 LINE L2 -522 2792 2566 260 275 14 0 chr12 35170511 35170580 -109111909 - L2 LINE L2 -958 2356 2287 373 359 82 41 chr12 35170650 35170964 -109111525 - L2 LINE L2 -1154 2160 1816 2406 80 0 0 chr12 35170964 35171264 -109111225 + AluY SINE Alu 1 300 -11 373 359 82 41 chr12 35171264 35171459 -109111030 - L2 LINE L2 -1498 1816 1630 593 77 0 0 chr12 35172919 35172997 -109109492 - MADE1 DNA Mariner 0 80 3 16606 60 3 0 chr12 35172997 35175147 -109107342 + L1P LINE L1 914 3070 -3076 240 361 37 19 chr12 35175489 35175597 -109106892 + MIR SINE MIR 34 143 -119 25 75 0 0 chr12 35175970 35176023 -109106466 + AT_rich Low_complexity Low_complexity 1 53 0 598 318 45 34 chr12 35176270 35176462 -109106027 + L2 LINE L2 302 499 -2815 2054 137 0 7 chr12 35176462 35176768 -109105721 - AluSx SINE Alu -8 304 1 598 318 45 34 chr12 35176768 35176842 -109105647 + L2 LINE L2 499 571 -2743 5395 241 54 108 chr12 35176955 35177872 -109104617 + L1M1 LINE L1 3411 4376 -3189 914 200 12 0 chr12 35177872 35178037 -109104452 + AluJb SINE Alu 145 311 -1 5395 241 54 108 chr12 35178037 35179056 -109103433 + L1M1 LINE L1 4376 5448 -2117 1791 124 0 3 chr12 35179056 35179335 -109103154 + L1MA2 LINE L1 6024 6304 0 5395 241 54 108 chr12 35179335 35179822 -109102667 + L1M1 LINE L1 5448 5787 -1778 4026 65 0 6 chr12 35179822 35180346 -109102143 - L1PA5 LINE L1 -3 6151 5631 5395 241 54 108 chr12 35180346 35180972 -109101517 + L1M1 LINE L1 5787 6445 -1120 688 248 97 27 chr12 35181952 35182210 -109100279 + AluJo SINE Alu 2 277 -35 1024 47 8 0 chr12 35182425 35182573 -109099916 + L1PA3 LINE L1 6015 6163 0 1905 107 13 24 chr12 35183350 35183648 -109098841 - AluSg SINE Alu -12 298 4 2052 135 3 3 chr12 35185074 35185085 -109097404 - AluSq SINE Alu -17 296 286 459 0 0 0 chr12 35185085 35185136 -109097353 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2052 135 3 3 chr12 35185136 35185420 -109097069 - AluSq SINE Alu -26 287 1 194 333 13 13 chr12 35186020 35186095 -109096394 + L2 LINE L2 3236 3310 -3 3665 88 31 99 chr12 35186324 35186968 -109095521 + MER4A LTR ERV1 1 600 0 665 213 141 25 chr12 35187105 35187437 -109095052 + LTR48 LTR ERV1 4 459 -328 1909 221 31 81 chr12 35187437 35188081 -109094408 + LTR9 LTR ERV1 1 612 0 665 213 141 25 chr12 35188081 35188113 -109094376 + LTR48 LTR ERV1 459 486 -301 1116 198 18 37 chr12 35188786 35189059 -109093430 + LTR48B LTR ERV1 377 644 0 24 53 0 0 chr12 35189572 35189610 -109092879 + AT_rich Low_complexity Low_complexity 1 38 0 3460 214 106 56 chr12 35189652 35190718 -109091771 + LTR28 LTR ERV1 1 1736 -19 2882 133 69 0 chr12 35190736 35191240 -109091249 - MER34C LTR ERV1 -7 578 40 4732 156 20 14 chr12 35191444 35192325 -109090164 + L1MA4 LINE L1 5414 6300 0 21 0 0 0 chr12 35192398 35192419 -109090070 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 35192606 35192627 -109089862 + AT_rich Low_complexity Low_complexity 1 21 0 240 177 0 32 chr12 35192948 35193010 -109089479 + HsTC2 DNA Tc2 232 291 -1607 607 300 31 27 chr12 35193014 35193237 -109089252 + HsTC2 DNA Tc2 488 711 -1187 3682 144 76 19 chr12 35193237 35193881 -109088608 - MER39 LTR ERV1 0 707 27 1182 203 99 60 chr12 35193889 35194303 -109088186 - LTR8A LTR ERV1 -8 719 290 230 174 0 0 chr12 35194494 35194540 -109087949 - MER87 LTR ERV1 -394 147 102 4237 189 30 2 chr12 35194547 35195334 -109087155 - MSTA-int LTR MaLR -842 809 1 2132 146 122 10 chr12 35195334 35195719 -109086770 - MSTA LTR MaLR 0 428 1 2252 149 0 5 chr12 35195917 35196285 -109086204 - MER47A DNA MER2_type 0 366 1 739 236 69 69 chr12 35196435 35196769 -109085720 - MLT1F-int LTR MaLR -760 611 278 339 293 21 14 chr12 35196770 35196910 -109085579 - MLT1F-int LTR MaLR -1230 141 1 1870 122 0 4 chr12 35196927 35197189 -109085300 - AluSg SINE Alu -49 261 1 1349 263 75 58 chr12 35197190 35197722 -109084767 - MLT1F LTR MaLR 0 542 2 2994 144 80 4 chr12 35197749 35198341 -109084148 + LTR24C LTR ERV1 2 467 0 202 268 0 54 chr12 35198437 35198493 -109083996 - L2 LINE L2 -257 3056 3004 1831 166 7 0 chr12 35198532 35198822 -109083667 + AluJb SINE Alu 12 303 -9 23 54 0 0 chr12 35199089 35199126 -109083363 + AT_rich Low_complexity Low_complexity 1 37 0 1714 173 65 3 chr12 35199405 35199729 -109082760 + Tigger3(Golem) DNA MER2_type 1 344 -2685 369 62 0 0 chr12 35199731 35199779 -109082710 + Alu SINE Alu 1 48 -253 * 493 254 116 13 chr12 35199769 35199993 -109082496 - LTR16A1 LTR ERVL -9 448 202 942 283 120 16 chr12 35200330 35200698 -109081791 + HERV16 LTR ERVL 1948 2353 -2643 452 255 9 9 chr12 35201262 35201368 -109081121 - L2 LINE L2 -16 3297 3192 339 354 24 0 chr12 35201536 35201663 -109080826 - MIR SINE MIR -31 231 102 27 29 0 0 chr12 35201917 35201951 -109080538 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr12 35202204 35202234 -109080255 + AT_rich Low_complexity Low_complexity 1 30 0 2979 125 30 118 chr12 35202293 35202964 -109079525 + LTR9 LTR ERV1 1 612 0 2487 142 47 0 chr12 35204353 35204762 -109077727 - MSTC LTR MaLR 0 428 1 357 151 72 0 chr12 35204854 35205020 -109077469 + (TA)n Simple_repeat Simple_repeat 2 179 0 365 173 66 2 chr12 35205036 35205502 -109076987 + (TA)n Simple_repeat Simple_repeat 1 495 0 36 40 0 0 chr12 35205503 35205553 -109076936 + AT_rich Low_complexity Low_complexity 1 50 0 1701 222 73 16 chr12 35206054 35206504 -109075985 + L1ME1 LINE L1 5373 5848 -318 270 56 0 0 chr12 35206514 35206550 -109075939 + (GA)n Simple_repeat Simple_repeat 1 36 0 272 291 13 0 chr12 35206891 35206970 -109075519 + (TTTA)n Simple_repeat Simple_repeat 3 82 0 228 203 43 14 chr12 35207005 35207074 -109075415 + A-rich Low_complexity Low_complexity 1 71 0 2217 108 7 0 chr12 35207114 35207410 -109075079 + AluSx SINE Alu 1 298 -14 246 373 24 24 chr12 35207892 35208018 -109074471 + L2 LINE L2 2882 3007 -265 377 348 44 0 chr12 35208021 35208156 -109074333 + MIR SINE MIR 4 144 -118 1452 225 64 3 chr12 35208159 35208505 -109073984 + MLT2D LTR ERVL 1 367 -47 329 141 43 33 chr12 35208524 35208638 -109073851 + MLT2B2 LTR ERVL 334 515 0 296 258 0 0 chr12 35208870 35208932 -109073557 + MER94 DNA DNA 1 62 -72 278 323 0 0 chr12 35210199 35210292 -109072197 - L2 LINE L2 0 3313 3221 507 239 107 41 chr12 35210914 35211111 -109071378 + MLT1J2 LTR MaLR 1 210 -240 264 294 24 0 chr12 35211152 35211237 -109071252 + MLT1J2 LTR MaLR 272 406 -44 21 0 0 0 chr12 35211641 35211662 -109070827 + AT_rich Low_complexity Low_complexity 1 21 0 40899 40 26 2 chr12 35211796 35217740 -109064749 + L1PA3 LINE L1 84 6170 0 619 235 0 0 chr12 35217998 35218113 -109064376 - FLAM_A SINE Alu -26 116 2 185 366 59 0 chr12 35218527 35218628 -109063861 - L2 LINE L2 -482 2832 2726 1195 237 88 10 chr12 35218638 35218946 -109063543 - LTR40b LTR ERVL -7 455 124 880 119 45 0 chr12 35218965 35219099 -109063390 + Tigger1 DNA MER2_type 2272 2411 -7 2196 159 22 39 chr12 35219101 35219517 -109062972 - L1MA6 LINE L1 -259 6041 5633 438 211 41 34 chr12 35222202 35222349 -109060140 + L1MC/D LINE L1 1349 1496 -5044 1772 196 29 40 chr12 35222350 35223022 -109059467 + L1MC/D LINE L1 5358 6023 -730 239 351 26 9 chr12 35223576 35223690 -109058799 - MER5A DNA MER1_type -20 169 54 27 29 0 0 chr12 35224004 35224038 -109058451 + AT_rich Low_complexity Low_complexity 1 34 0 21 82 0 0 chr12 35224233 35224282 -109058207 + AT_rich Low_complexity Low_complexity 1 49 0 277 258 82 21 chr12 35225157 35225254 -109057235 + MIR SINE MIR 42 144 -64 348 336 168 38 chr12 35225573 35226186 -109056303 - L2 LINE L2 -1904 1410 718 200 184 0 0 chr12 35226456 35226494 -109055995 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 187 247 24 82 chr12 35226738 35226823 -109055666 + L2 LINE L2 1153 1232 -2082 22 35 0 0 chr12 35226945 35226974 -109055515 + AT_rich Low_complexity Low_complexity 1 29 0 1057 273 62 67 chr12 35227211 35227676 -109054813 - MLT1J LTR MaLR -42 469 7 22 35 0 0 chr12 35227807 35227836 -109054653 + AT_rich Low_complexity Low_complexity 1 29 0 398 300 21 7 chr12 35227836 35227976 -109054513 + HsTC2 DNA Tc2 4 145 -1753 2076 235 73 19 chr12 35227984 35228572 -109053917 + HsTC2 DNA Tc2 1274 1893 -5 336 242 0 0 chr12 35228735 35228801 -109053688 + L2 LINE L2 3243 3308 -5 265 268 82 21 chr12 35230180 35230277 -109052212 + MIR SINE MIR 42 144 -64 314 231 77 115 chr12 35230771 35230798 -109051691 - L2 LINE L2 0 3313 3286 2219 99 3 7 chr12 35230798 35231100 -109051389 + AluSp SINE Alu 1 301 -12 314 231 77 115 chr12 35231100 35231202 -109051287 - L2 LINE L2 -27 3286 3189 192 40 0 0 chr12 35236297 35236322 -109046167 + (GGGA)n Simple_repeat Simple_repeat 3 27 0 834 153 90 37 chr12 35236788 35236977 -109045512 - AluJo SINE Alu -113 199 1 2380 92 0 6 chr12 35239014 35239350 -109043139 - AluSq SINE Alu 0 334 1 999 281 102 52 chr12 35239351 35240167 -109042322 - HAL1 LINE L1 -1021 1486 630 357 263 77 94 chr12 35240190 35240712 -109041777 - HAL1 LINE L1 -1953 554 42 224 311 48 39 chr12 35240769 35240872 -109041617 + L2 LINE L2 2727 2830 -484 304 319 44 9 chr12 35240964 35241077 -109041412 + L2 LINE L2 3197 3313 0 2295 143 20 0 chr12 35241159 35241516 -109040973 - THE1B LTR MaLR 0 364 1 591 318 50 14 chr12 35241810 35242030 -109040459 - MIR SINE MIR -33 229 2 750 181 6 6 chr12 35242384 35242550 -109039939 - L1MA9 LINE L1 0 6312 6147 12890 107 40 122 chr12 35242573 35243532 -109038957 - Tigger1 DNA MER2_type 0 2418 1382 2166 134 6 0 chr12 35243532 35243868 -109038621 + L1PA16 LINE L1 5828 6165 -1 12890 107 40 122 chr12 35243868 35244907 -109037582 - Tigger1 DNA MER2_type -1036 1382 260 1987 144 0 0 chr12 35244907 35245199 -109037290 + AluSx SINE Alu 1 292 -20 12890 107 40 122 chr12 35245199 35245482 -109037007 - Tigger1 DNA MER2_type -2158 260 376 2195 171 35 26 chr12 35245482 35245904 -109036585 - MSTB LTR MaLR 0 426 1 12890 107 40 122 chr12 35245904 35246253 -109036236 - Tigger1 DNA MER2_type -2041 377 1 450 141 0 0 chr12 35246256 35246327 -109036162 - L1MA9 LINE L1 -184 6128 6058 256 237 48 29 chr12 35246347 35246479 -109036010 - L1ME LINE L1 -298 5823 5687 32 43 0 0 chr12 35246747 35246793 -109035696 + AT_rich Low_complexity Low_complexity 1 46 0 1011 211 0 0 chr12 35246834 35247014 -109035475 - MER5A DNA MER1_type -7 182 3 250 343 27 34 chr12 35247194 35247340 -109035149 + MIR SINE MIR 72 216 -46 267 341 81 16 chr12 35247695 35247818 -109034671 + L2 LINE L2 3111 3241 -31 4496 211 47 15 chr12 35248387 35250354 -109032135 + L1MB7 LINE L1 4151 6184 0 32 43 0 0 chr12 35250402 35250448 -109032041 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr12 35251983 35252011 -109030478 + AT_rich Low_complexity Low_complexity 1 28 0 334 301 27 22 chr12 35252375 35252558 -109029931 + L1ME LINE L1 5634 5817 -304 11835 161 85 13 chr12 35252559 35255075 -109027414 + L1MB7 LINE L1 4 2699 -3683 6964 228 55 22 chr12 35255045 35256606 -109025883 + L1MB7 LINE L1 3457 5097 -1285 * 2149 117 0 3 chr12 35256606 35256919 -109025570 + AluSx SINE Alu 5 312 0 6964 228 55 22 chr12 35256919 35257305 -109025184 + L1MB7 LINE L1 5097 5469 -913 838 210 70 11 chr12 35257512 35257821 -109024668 - MLT1A1 LTR MaLR -1 364 1 316 286 186 45 chr12 35257828 35258048 -109024441 + MIR SINE MIR 5 255 -7 31254 108 17 59 chr12 35258739 35265159 -109017330 + L1PA7 LINE L1 12 6154 0 345 212 94 0 chr12 35265537 35265622 -109016867 - L2 LINE L2 0 3313 3221 2640 199 38 19 chr12 35265622 35266250 -109016239 + L1MB7 LINE L1 5781 6420 0 233 313 45 36 chr12 35266250 35266362 -109016127 - L2 LINE L2 -8 3305 3193 1254 186 121 29 chr12 35267004 35267311 -109015178 + MLT2C1 LTR ERVL 6 340 -57 2114 178 43 0 chr12 35267349 35267806 -109014683 + HERVL LTR ERVL 1972 2443 -3321 240 184 0 0 chr12 35267806 35267855 -109014634 + (TG)n Simple_repeat Simple_repeat 2 50 0 298 319 37 44 chr12 35267862 35267997 -109014492 - MIR SINE MIR -104 158 25 22 35 0 0 chr12 35268500 35268529 -109013960 + AT_rich Low_complexity Low_complexity 1 29 0 522 0 0 0 chr12 35268648 35268706 -109013783 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 239 431 17 11 chr12 35268735 35268909 -109013580 + MER5B DNA MER1_type 1 175 -3 27 29 0 0 chr12 35269183 35269217 -109013272 + AT_rich Low_complexity Low_complexity 1 34 0 21 82 0 0 chr12 35269412 35269461 -109013028 + AT_rich Low_complexity Low_complexity 1 49 0 4388 220 134 21 chr12 35270446 35272175 -109010314 + L1M4 LINE L1 830 2751 -3895 320 104 21 0 chr12 35272175 35272223 -109010266 + MSTB2 LTR MaLR 408 456 -1 4194 249 82 52 chr12 35272223 35273907 -109008582 + MLT1A1-int LTR MaLR 2 1735 0 1278 207 50 94 chr12 35273907 35274288 -109008201 + MLT1A1 LTR MaLR 1 364 -1 8598 256 47 11 chr12 35274321 35277264 -109005225 + L1M4 LINE L1 2798 5845 -812 3984 176 47 25 chr12 35277272 35278102 -109004387 + L1MB5 LINE L1 5281 6134 -40 1819 170 7 7 chr12 35278102 35278396 -109004093 + AluJb SINE Alu 1 294 -18 3984 176 47 25 chr12 35278396 35278430 -109004059 + L1MB5 LINE L1 6134 6166 -8 723 266 42 55 chr12 35278513 35278802 -109003687 - LTR41 LTR ERVL -14 759 475 339 229 66 25 chr12 35278963 35279085 -109003404 - LTR41 LTR ERVL -646 127 1 543 302 57 77 chr12 35280517 35280987 -109001502 + L2 LINE L2 2853 3313 0 2349 93 0 10 chr12 35281565 35281875 -109000614 + AluSc SINE Alu 3 309 0 250 287 47 23 chr12 35282194 35282323 -109000166 - MER74B LTR ERVL -77 545 414 407 306 81 19 chr12 35283319 35283577 -108998912 + L1M4 LINE L1 2341 2614 -3532 455 245 87 21 chr12 35283778 35284064 -108998425 + L1M4 LINE L1 2860 3164 -2982 207 0 0 0 chr12 35284118 35284141 -108998348 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 1891 188 39 0 chr12 35284161 35284496 -108997993 + MER7A DNA MER2_type 1 346 0 311 299 51 32 chr12 35284496 35284644 -108997845 + L1MEc LINE L1 115 268 -6128 411 286 43 33 chr12 35284836 35285112 -108997377 + L1M4 LINE L1 3608 3886 -2260 13686 190 27 43 chr12 35285118 35288525 -108993964 + L1M1 LINE L1 13 3783 -3782 30380 104 10 32 chr12 35288533 35292692 -108989797 + L1PA7 LINE L1 1 4040 -2429 1878 149 24 0 chr12 35292692 35292981 -108989508 + AluSg SINE Alu 1 296 -14 30380 104 10 32 chr12 35292981 35295356 -108987133 + L1PA7 LINE L1 4040 6465 -4 1500 261 21 13 chr12 35295352 35295824 -108986665 + L1M1 LINE L1 3769 4244 -3321 * 2620 138 9 0 chr12 35295822 35296264 -108986225 - L1 LINE L1 -1191 4955 4510 1947 136 3 3 chr12 35296264 35296559 -108985930 - AluSx SINE Alu -12 300 6 9674 235 57 25 chr12 35296604 35296956 -108985533 - L1MB1 LINE L1 -1 6403 6064 186 43 0 0 chr12 35296956 35296979 -108985510 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 9674 235 57 25 chr12 35296979 35298222 -108984267 - L1MB1 LINE L1 -340 6064 4862 2090 113 10 0 chr12 35298222 35298513 -108983976 - AluSg SINE Alu -16 294 1 9674 235 57 25 chr12 35298513 35299872 -108982617 - L1MB1 LINE L1 -1542 4862 3548 2277 96 0 0 chr12 35299872 35300175 -108982314 - AluY SINE Alu -8 303 1 9674 235 57 25 chr12 35300175 35302146 -108980343 - L1MB1 LINE L1 -2856 3548 1272 12817 212 47 28 chr12 35302153 35302689 -108979800 + L1MA9 LINE L1 2871 3395 -4336 1151 207 4 0 chr12 35302689 35302921 -108979568 + MER46A DNA MER2_type 4 236 0 12817 212 47 28 chr12 35302921 35306130 -108976359 + L1MA9 LINE L1 3395 6757 -974 216 0 0 0 chr12 35306130 35306154 -108976335 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 12817 212 47 28 chr12 35306154 35307135 -108975354 + L1MA9 LINE L1 6757 7718 -13 23 0 0 0 chr12 35307905 35307928 -108974561 + AT_rich Low_complexity Low_complexity 1 23 0 6024 84 4 9 chr12 35308425 35309547 -108972942 - L1PA14 LINE L1 0 6161 5077 2114 133 19 32 chr12 35309547 35309916 -108972573 + THE1B LTR MaLR 1 364 0 6024 84 4 9 chr12 35309916 35310711 -108971778 - L1PA14 LINE L1 -1084 5077 4279 232 283 158 33 chr12 35311247 35311367 -108971122 + LTR50 LTR ERVL 18 152 -643 502 262 55 6 chr12 35311371 35311535 -108970954 - MER5B DNA MER1_type -2 176 5 418 318 126 35 chr12 35311667 35311928 -108970561 + LTR50 LTR ERVL 353 637 -158 260 250 24 0 chr12 35313305 35313389 -108969100 + (TA)n Simple_repeat Simple_repeat 1 86 0 267 140 35 18 chr12 35314644 35314701 -108967788 + HSMAR1 DNA Mariner 1230 1287 0 217 0 0 57 chr12 35316961 35316996 -108965493 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 37440 88 9 6 chr12 35317039 35323135 -108959354 + L1PA6 LINE L1 32 6148 -6 220 235 53 129 chr12 35324693 35324759 -108957730 + MIR SINE MIR 50 119 -143 180 0 0 0 chr12 35324759 35324779 -108957710 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 1951 149 0 0 chr12 35324784 35325065 -108957424 - AluSx SINE Alu -23 289 9 220 235 53 129 chr12 35325065 35325162 -108957327 + MIR SINE MIR 123 206 -56 200 320 0 0 chr12 35325302 35325352 -108957137 - L2 LINE L2 -6 3266 3217 347 333 27 20 chr12 35325397 35325544 -108956945 - MIR3 SINE MIR -3 205 58 2155 109 7 10 chr12 35326714 35327016 -108955473 + AluSx SINE Alu 1 301 -11 210 333 245 0 chr12 35327025 35327262 -108955227 - L2 LINE L2 -775 2539 2245 893 283 71 36 chr12 35327283 35327647 -108954842 + MLT1G LTR MaLR 13 389 -201 2042 128 40 0 chr12 35327909 35328206 -108954283 + AluSg SINE Alu 1 309 -1 321 26 0 0 chr12 35329988 35330026 -108952463 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1929 132 0 11 chr12 35330189 35330494 -108951995 + AluSx SINE Alu 5 306 0 256 148 0 0 chr12 35330805 35330821 -108951668 - LTR66 LTR ERVL -156 454 439 315 0 0 0 chr12 35330821 35330856 -108951633 + (TC)n Simple_repeat Simple_repeat 2 36 0 256 148 0 0 chr12 35330856 35330900 -108951589 - LTR66 LTR ERVL -170 440 394 264 122 0 0 chr12 35330914 35330955 -108951534 + (TA)n Simple_repeat Simple_repeat 1 41 0 287 304 30 101 chr12 35331068 35331236 -108951253 - L2 LINE L2 -1 3271 3116 361 224 0 0 chr12 35331742 35331818 -108950671 - MER34C LTR ERV1 -355 230 155 284 250 46 46 chr12 35331889 35331997 -108950492 - MER57A-int LTR ERV1 -4123 3414 3307 4799 153 33 16 chr12 35332059 35332883 -108949606 - MER57A-int LTR ERV1 -6695 842 5 645 169 0 25 chr12 35332886 35333004 -108949485 - MER57A LTR ERV1 0 403 289 34 24 0 0 chr12 35333880 35333921 -108948568 + AT_rich Low_complexity Low_complexity 1 41 0 1255 65 60 5 chr12 35333942 35334126 -108948363 - L1PA7 LINE L1 -17 6137 5944 1378 142 69 88 chr12 35335512 35335829 -108946660 - AluJo SINE Alu -1 311 1 1322 70 55 5 chr12 35336297 35336498 -108945991 + L1PA7 LINE L1 5944 6154 0 229 0 54 27 chr12 35336503 35336540 -108945949 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 348 288 78 39 chr12 35337310 35337463 -108945026 - MIR SINE MIR -89 173 15 4726 194 31 33 chr12 35337773 35339247 -108943242 + L1MB2 LINE L1 4143 5613 -558 1985 160 24 3 chr12 35339249 35339581 -108942908 + MER7A DNA MER2_type 3 339 -7 2545 180 75 0 chr12 35339582 35340104 -108942385 + L1MB2 LINE L1 5611 6171 0 2596 139 24 5 chr12 35340915 35341333 -108941156 - MSTB LTR MaLR 0 426 1 223 233 101 101 chr12 35341427 35341556 -108940933 - L2 LINE L2 -40 3273 3145 1586 280 102 43 chr12 35341850 35342760 -108939729 + L2 LINE L2 2310 3263 -50 2223 88 62 0 chr12 35342794 35343114 -108939375 + L1PA16 LINE L1 5818 6157 -9 228 269 0 0 chr12 35344525 35344577 -108937912 + MER94 DNA DNA 1 52 -82 22 35 0 0 chr12 35345824 35345853 -108936636 + AT_rich Low_complexity Low_complexity 1 29 0 4097 238 64 58 chr12 35345853 35346475 -108936014 - L1ME1 LINE L1 0 6291 5674 2143 120 47 33 chr12 35346475 35346834 -108935655 + THE1B LTR MaLR 1 364 0 11023 98 28 1 chr12 35346834 35348372 -108934117 + THE1B-int LTR MaLR 1 1580 0 2071 111 62 28 chr12 35348372 35348724 -108933765 + THE1B LTR MaLR 1 364 0 4097 238 64 58 chr12 35348724 35350638 -108931851 - L1ME1 LINE L1 -616 5675 3786 21 57 0 0 chr12 35351001 35351036 -108931453 + AT_rich Low_complexity Low_complexity 1 35 0 767 186 4 31 chr12 35351040 35351251 -108931238 - L1MC/D LINE L1 -710 5456 5257 1845 182 22 71 chr12 35352432 35352646 -108929843 - MER31A LTR ERV1 0 485 262 3328 87 11 4 chr12 35352646 35353096 -108929393 + MLT2A2 LTR ERVL 1 453 0 1845 182 22 71 chr12 35353096 35353391 -108929098 - MER31A LTR ERV1 -223 262 1 1621 204 39 75 chr12 35353442 35353858 -108928631 + LTR8 LTR ERV1 1 401 -290 320 356 49 0 chr12 35353919 35354082 -108928407 + MIR SINE MIR 82 252 -10 377 317 60 49 chr12 35354585 35354768 -108927721 + MER5A DNA MER1_type 5 189 0 318 283 22 16 chr12 35355930 35356036 -108926453 + MIR SINE MIR 13 118 -90 21 0 0 0 chr12 35356648 35356669 -108925820 + AT_rich Low_complexity Low_complexity 1 21 0 303 250 0 0 chr12 35356798 35356862 -108925627 - MIR SINE MIR -78 184 121 1415 146 35 17 chr12 35356915 35357423 -108925066 - LTR36 LTR ERV1 -30 581 9 1717 301 47 39 chr12 35357463 35358457 -108924032 + L1MA5 LINE L1 1 1910 -5299 1156 180 40 0 chr12 35358452 35358724 -108923765 + L1MA5 LINE L1 4016 4298 -2910 * 6350 142 15 26 chr12 35358731 35360210 -108922279 + L1MA5 LINE L1 5903 7357 -5 1846 142 45 54 chr12 35360539 35361191 -108921298 - Tigger3b DNA MER2_type -506 726 2 642 196 0 0 chr12 35361194 35361306 -108921183 - MLT1E3 LTR MaLR -504 120 9 24 32 0 0 chr12 35361391 35361422 -108921067 + AT_rich Low_complexity Low_complexity 1 31 0 198 224 41 20 chr12 35362368 35362417 -108920072 - L2 LINE L2 -13 3259 3210 575 289 63 20 chr12 35362647 35362997 -108919492 - L1M4 LINE L1 -2445 3701 3337 1743 149 54 69 chr12 35363191 35363599 -108918890 - L1MA9 LINE L1 0 6312 5911 6208 161 10 3 chr12 35363599 35365747 -108916742 + L1PB1 LINE L1 3985 6149 -2 262 113 19 19 chr12 35366173 35366226 -108916263 + (TA)n Simple_repeat Simple_repeat 2 54 0 550 157 0 29 chr12 35366327 35366429 -108916060 + Tigger5 DNA MER2_type 2225 2323 0 23 54 0 0 chr12 35366519 35366556 -108915933 + AT_rich Low_complexity Low_complexity 1 37 0 240 258 0 0 chr12 35367133 35367199 -108915290 - LTR37B LTR ERV1 -166 302 237 1484 251 84 25 chr12 35367234 35367709 -108914780 - LTR40a LTR ERVL -1 518 16 884 266 58 9 chr12 35367715 35368041 -108914448 - HERVL40 LTR ERVL -11 5519 2786 428 330 27 0 chr12 35368080 35368268 -108914221 - MER89-int LTR ERV1 -491 6310 6118 2040 286 58 30 chr12 35369018 35370006 -108912483 - HERVL40 LTR ERVL -882 4648 3603 706 224 25 151 chr12 35370012 35370522 -108911967 + L1M3 LINE L1 2884 3329 -2817 592 132 11 0 chr12 35370528 35370619 -108911870 + U6 snRNA snRNA 12 103 -4 14051 179 14 24 chr12 35370621 35374431 -108908058 + L1PA13 LINE L1 2397 6163 0 2219 228 18 21 chr12 35374434 35375049 -108907440 + L1M3 LINE L1 3332 3944 -2202 1538 196 9 22 chr12 35375052 35375587 -108906902 + L1M3 LINE L1 4992 5519 -661 25 75 0 0 chr12 35375653 35375706 -108906783 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr12 35375816 35375837 -108906652 + AT_rich Low_complexity Low_complexity 1 21 0 535 343 33 0 chr12 35378154 35378335 -108904154 - MIR SINE MIR -70 192 6 440 354 109 30 chr12 35378639 35379035 -108903454 + L2 LINE L2 2887 3313 0 2322 42 24 0 chr12 35379759 35380047 -108902442 - AluY SINE Alu -16 295 1 330 411 31 8 chr12 35382060 35382189 -108900300 - L2 LINE L2 -7 3265 3134 21 36 0 0 chr12 35382208 35382236 -108900253 + AT_rich Low_complexity Low_complexity 1 28 0 213 227 0 0 chr12 35382239 35382283 -108900206 - L2 LINE L2 0 3313 3270 2210 280 84 51 chr12 35383110 35384278 -108898211 - L2 LINE L2 -78 3235 2032 623 359 31 34 chr12 35385731 35386113 -108896376 - L2 LINE L2 -920 2394 2014 549 343 37 59 chr12 35386165 35386701 -108895788 - L2 LINE L2 -8 3264 2749 262 318 161 5 chr12 35386728 35386774 -108895715 - L2 LINE L2 -1226 2088 2051 342 45 0 0 chr12 35386774 35386818 -108895671 + (CA)n Simple_repeat Simple_repeat 2 45 0 262 318 161 5 chr12 35386818 35386963 -108895526 - L2 LINE L2 -1263 2051 1867 255 242 209 13 chr12 35387719 35387872 -108894617 - L2 LINE L2 -4 3309 3127 1419 314 66 36 chr12 35388176 35388774 -108893715 - L2 LINE L2 -40 3273 2694 441 254 73 49 chr12 35388774 35388979 -108893510 + MER63A DNA MER1_type 1 210 0 1419 314 66 36 chr12 35388979 35389177 -108893312 - L2 LINE L2 -619 2694 2503 2153 196 31 17 chr12 35389177 35389656 -108892833 + MER66B LTR ERV1 1 486 0 1419 314 66 36 chr12 35389656 35389866 -108892623 - L2 LINE L2 -810 2503 2222 412 335 55 15 chr12 35390652 35390852 -108891637 + Charlie8 DNA MER1_type 6 213 -2204 2268 176 21 32 chr12 35390911 35391377 -108891112 + MER65C LTR ERV1 1 461 0 296 197 0 56 chr12 35391450 35391521 -108890968 + Charlie8 DNA MER1_type 1356 1422 -995 403 237 98 127 chr12 35391837 35391989 -108890500 - LTR50 LTR ERVL -24 771 627 2033 128 0 4 chr12 35391989 35392270 -108890219 + AluSx SINE Alu 1 280 -32 403 237 98 127 chr12 35392270 35392362 -108890127 - LTR50 LTR ERVL -168 627 534 272 129 0 29 chr12 35392362 35392432 -108890057 + (GAAA)n Simple_repeat Simple_repeat 2 69 0 1144 208 216 31 chr12 35392437 35392923 -108889566 - LTR50 LTR ERVL -213 582 7 301 312 70 50 chr12 35393107 35393510 -108888979 - MLT1J LTR MaLR -58 453 9 359 289 22 0 chr12 35394204 35394294 -108888195 + L2 LINE L2 3181 3272 0 243 65 0 0 chr12 35395476 35395507 -108886982 + L1PBa LINE L1 2929 2959 -3904 371 322 159 56 chr12 35395713 35396395 -108886094 - L2 LINE L2 -213 3059 2300 2809 271 84 36 chr12 35397587 35398914 -108883575 + L1MEc LINE L1 37 1426 -4970 1145 261 73 0 chr12 35398921 35399345 -108883144 + L1MEc LINE L1 2178 2595 -3620 1203 241 26 9 chr12 35399355 35399704 -108882785 + L1MEc LINE L1 2639 2993 -3222 622 257 22 64 chr12 35399836 35400274 -108882215 + L1ME1 LINE L1 5760 6331 -3 335 341 24 0 chr12 35400774 35400897 -108881592 + L2 LINE L2 3188 3313 0 192 77 0 0 chr12 35400957 35400983 -108881506 + (CAG)n Simple_repeat Simple_repeat 1 26 0 252 405 28 37 chr12 35401205 35401420 -108881069 + L2 LINE L2 2745 2957 -357 2358 63 26 0 chr12 35401420 35401723 -108880766 - AluY SINE Alu 0 311 1 216 250 0 0 chr12 35401812 35401852 -108880637 + (CA)n Simple_repeat Simple_repeat 2 41 0 25 0 0 0 chr12 35402311 35402336 -108880153 + AT_rich Low_complexity Low_complexity 1 25 0 195 190 0 0 chr12 35402336 35402394 -108880095 + (TA)n Simple_repeat Simple_repeat 2 59 0 255 141 14 28 chr12 35402427 35402498 -108879991 + CT-rich Low_complexity Low_complexity 1 70 0 2218 104 36 28 chr12 35403390 35403746 -108878743 + THE1B LTR MaLR 3 361 -3 1574 86 0 5 chr12 35404660 35404880 -108877609 - L1PA7 LINE L1 -2 6152 5934 224 366 113 32 chr12 35405030 35405216 -108877273 - MIR3 SINE MIR -3 205 5 6782 68 6 1 chr12 35406929 35407873 -108874616 + L1PA7 LINE L1 5206 6153 -1 1173 147 32 0 chr12 35409731 35409949 -108872540 + L1MA8 LINE L1 6065 6289 -2 1845 249 83 25 chr12 35409962 35410609 -108871880 + L1MC4 LINE L1 7185 7869 -173 244 285 31 54 chr12 35411326 35411456 -108871033 + L2 LINE L2 2199 2325 -989 2528 102 11 6 chr12 35411627 35411989 -108870500 + THE1B LTR MaLR 1 364 0 9791 124 21 31 chr12 35411989 35412748 -108869741 + THE1B-int LTR MaLR 1 766 -814 2304 62 0 80 chr12 35412748 35413085 -108869404 + AluY SINE Alu 1 310 -1 9791 124 21 31 chr12 35413085 35413921 -108868568 + THE1B-int LTR MaLR 766 1580 0 2337 106 49 9 chr12 35413923 35414271 -108868218 + THE1B LTR MaLR 3 364 0 382 339 45 38 chr12 35415704 35415993 -108866496 + L1MEd LINE L1 670 960 -5159 843 129 0 43 chr12 35416120 35416259 -108866230 + FLAM_C SINE Alu 1 133 0 283 328 30 38 chr12 35416345 35416476 -108866013 - MIR SINE MIR -73 189 60 877 251 122 57 chr12 35417005 35417423 -108865066 - LTR16A1 LTR ERVL -5 452 8 1757 129 85 0 chr12 35418203 35418475 -108864014 + AluSx SINE Alu 1 295 -17 32 57 0 0 chr12 35418727 35418780 -108863709 + AT_rich Low_complexity Low_complexity 1 53 0 296 332 90 41 chr12 35419042 35419310 -108863179 + L3 LINE CR1 1011 1291 -286 369 62 0 0 chr12 35419408 35419456 -108863033 + (TG)n Simple_repeat Simple_repeat 1 48 0 334 299 46 0 chr12 35419550 35419637 -108862852 - L2 LINE L2 -15 3298 3208 27 81 0 0 chr12 35420522 35420584 -108861905 + AT_rich Low_complexity Low_complexity 1 62 0 430 36 0 0 chr12 35420752 35420808 -108861681 + L1PA6 LINE L1 6099 6154 0 770 100 15 8 chr12 35420817 35420947 -108861542 + L1PA13 LINE L1 6026 6156 -7 1753 158 22 4 chr12 35420983 35421256 -108861233 + AluJb SINE Alu 1 278 -34 2183 99 0 7 chr12 35421283 35421576 -108860913 - AluSp SINE Alu -22 291 1 421 283 158 0 chr12 35422317 35422494 -108859995 - MIR SINE MIR -48 214 10 257 329 88 60 chr12 35422604 35422820 -108859669 - L2 LINE L2 -37 3235 3014 1154 128 30 0 chr12 35422844 35423047 -108859442 - L1MA8 LINE L1 -7 6284 6076 335 106 76 15 chr12 35423047 35423113 -108859376 + L1M2 LINE L1 5747 5816 -484 536 365 63 34 chr12 35423113 35423783 -108858706 - L2 LINE L2 -254 3018 2254 885 256 84 12 chr12 35423840 35424161 -108858328 - MER2 DNA MER2_type 0 344 1 307 283 22 7 chr12 35424967 35425105 -108857384 + (TA)n Simple_repeat Simple_repeat 1 140 0 2092 50 7 28 chr12 35426754 35427036 -108855453 + AluY SINE Alu 35 310 -1 2260 101 3 0 chr12 35427663 35427970 -108854519 + AluSg SINE Alu 1 308 -2 378 346 21 16 chr12 35428775 35428963 -108853526 + MER89-int LTR ERV1 2017 2205 -2442 322 301 120 0 chr12 35429382 35429515 -108852974 + MER89-int LTR ERV1 4988 5136 -1665 2471 61 0 0 chr12 35429904 35430200 -108852289 + AluY SINE Alu 1 296 -15 1342 179 50 36 chr12 35430444 35430748 -108851741 + AluJb SINE Alu 1 308 0 2218 85 0 0 chr12 35431242 35431570 -108850919 + AluY SINE Alu 1 328 0 225 0 0 0 chr12 35431813 35431838 -108850651 + (T)n Simple_repeat Simple_repeat 1 25 0 781 95 0 0 chr12 35431838 35431954 -108850535 - LTR9B LTR ERV1 -84 560 445 873 262 103 59 chr12 35432348 35432866 -108849623 - L2 LINE L2 -1 3312 2776 22 70 0 0 chr12 35432993 35433036 -108849453 + AT_rich Low_complexity Low_complexity 1 43 0 527 267 64 32 chr12 35433300 35433383 -108849106 + MIR SINE MIR 70 149 -113 3093 156 135 5 chr12 35433383 35434005 -108848484 + MER39 LTR ERV1 1 703 -4 527 267 64 32 chr12 35434005 35434108 -108848381 + MIR SINE MIR 149 262 0 28 91 0 0 chr12 35435104 35435181 -108847308 + AT_rich Low_complexity Low_complexity 1 77 0 2120 238 79 4 chr12 35437258 35437963 -108844526 - L1M4 LINE L1 -2886 3260 2503 252 262 60 0 chr12 35438351 35438435 -108844054 + L1ME LINE L1 5738 5826 -295 21 0 0 0 chr12 35438517 35438538 -108843951 + AT_rich Low_complexity Low_complexity 1 21 0 471 320 39 28 chr12 35439001 35439179 -108843310 + MIR SINE MIR 12 191 -71 22 70 0 0 chr12 35439375 35439418 -108843071 + AT_rich Low_complexity Low_complexity 1 43 0 212 278 14 0 chr12 35439955 35440027 -108842462 + (TA)n Simple_repeat Simple_repeat 2 74 0 339 285 33 53 chr12 35440928 35441079 -108841410 + L1MEc LINE L1 1508 1655 -4741 302 279 47 0 chr12 35441132 35441261 -108841228 + L1MEc LINE L1 1669 1803 -4593 21 0 0 0 chr12 35441741 35441762 -108840727 + AT_rich Low_complexity Low_complexity 1 21 0 1807 83 34 19 chr12 35442033 35442299 -108840190 - L1PA7 LINE L1 -1 6153 5884 3395 131 22 16 chr12 35442934 35443483 -108839006 - L1PA15 LINE L1 -8 6157 5606 405 350 21 7 chr12 35443488 35443631 -108838858 - MIR3 SINE MIR -62 146 2 1554 225 40 0 chr12 35443700 35444051 -108838438 + MLT1A1 LTR MaLR 1 365 0 325 254 164 30 chr12 35444590 35444755 -108837734 + MER5A DNA MER1_type 1 187 -2 27 29 0 0 chr12 35444795 35444829 -108837660 + AT_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chr12 35444845 35444874 -108837615 + AT_rich Low_complexity Low_complexity 1 29 0 315 339 39 39 chr12 35445426 35445553 -108836936 + LTR67 LTR ERVL 98 224 -333 3139 201 10 63 chr12 35446343 35447069 -108835420 - LTR8 LTR ERV1 -3 688 2 3014 40 0 21 chr12 35447071 35447451 -108835038 - L1PA5 LINE L1 0 6154 5783 325 250 134 0 chr12 35447683 35447795 -108834694 + L2 LINE L2 3183 3309 -4 293 370 55 8 chr12 35447802 35447929 -108834560 + MER5A DNA MER1_type 56 188 -1 1866 160 35 0 chr12 35447974 35448262 -108834227 + AluSx SINE Alu 1 298 -14 757 279 50 46 chr12 35448296 35448619 -108833870 - MER93a LTR ERV1 -4 398 75 289 260 62 45 chr12 35448959 35449136 -108833353 - MER93b-int LTR ERV1 -667 7149 6970 1016 206 186 92 chr12 35449366 35449940 -108832549 - MER93b-int LTR ERV1 -203 4733 4106 2478 54 0 0 chr12 35449941 35450237 -108832252 + AluY SINE Alu 1 296 -15 1870 222 27 32 chr12 35450278 35450853 -108831636 - MER93b-int LTR ERV1 -1189 3747 3306 1900 209 124 107 chr12 35450879 35451912 -108830577 - MER93b-int LTR ERV1 -1786 3150 2100 2526 134 21 28 chr12 35451941 35452374 -108830115 + LTR10D LTR ERV1 84 513 0 633 219 5 37 chr12 35452498 35452685 -108829804 - MER93b-int LTR ERV1 -3072 1864 1684 381 171 92 53 chr12 35452780 35452932 -108829557 - MER93b-int LTR ERV1 -3140 3123 1476 21 57 0 0 chr12 35452966 35453001 -108829488 + AT_rich Low_complexity Low_complexity 1 35 0 285 107 92 0 chr12 35453001 35453132 -108829357 + (TA)n Simple_repeat Simple_repeat 1 143 0 382 220 99 42 chr12 35453136 35453361 -108829128 - MER93b-int LTR ERV1 -3771 1165 884 385 246 30 72 chr12 35454254 35454421 -108828068 - MER93b-int LTR ERV1 -7287 250 91 2645 42 0 0 chr12 35454422 35454733 -108827756 + AluY SINE Alu 1 311 0 525 287 65 19 chr12 35454852 35455068 -108827421 - MER93b LTR ERV1 -4 369 144 2308 81 13 0 chr12 35455070 35455377 -108827112 + AluSp SINE Alu 1 311 -2 312 288 81 0 chr12 35456248 35456359 -108826130 - L1ME LINE L1 -578 5584 5465 480 306 102 59 chr12 35456551 35456875 -108825614 - L1ME LINE L1 -2214 3932 3595 603 262 96 109 chr12 35457051 35457684 -108824805 - MLT2E LTR ERVL -3 625 1 445 299 76 82 chr12 35457708 35458364 -108824125 - L1M4 LINE L1 -2393 3753 3102 1938 253 50 30 chr12 35458760 35459162 -108823327 - L1ME3 LINE L1 -1 6161 5739 1909 174 50 31 chr12 35459162 35459582 -108822907 + MSTC LTR MaLR 1 428 0 1938 253 50 30 chr12 35459582 35459843 -108822646 - L1ME3 LINE L1 -423 5739 5485 225 304 0 43 chr12 35459859 35459928 -108822561 - MIR SINE MIR -1 261 196 1977 253 51 38 chr12 35460115 35460858 -108821631 - L1ME3A LINE L1 -111 6059 5307 1704 233 111 93 chr12 35460865 35461987 -108820502 - L1ME3A LINE L1 -913 5233 4092 372 237 126 35 chr12 35461987 35462185 -108820304 - L1ME3A LINE L1 -3449 2697 2482 245 224 30 0 chr12 35462185 35462252 -108820237 + L1MC4 LINE L1 6637 6705 -1337 299 363 34 7 chr12 35462542 35462688 -108819801 - L2 LINE L2 -678 2636 2487 387 292 225 10 chr12 35464014 35464223 -108818266 - MIR SINE MIR -2 260 7 1206 237 73 111 chr12 35465336 35465388 -108817101 + MLT1F1 LTR MaLR 3 55 -512 2394 82 0 0 chr12 35465388 35465681 -108816808 - AluSg SINE Alu -15 295 3 1206 237 73 111 chr12 35465681 35465892 -108816597 + MLT1F1 LTR MaLR 55 272 -295 1241 228 93 22 chr12 35465892 35466256 -108816233 - MLT1B LTR MaLR 0 390 1 1206 237 73 111 chr12 35466256 35466552 -108815937 + MLT1F1 LTR MaLR 272 567 0 246 275 35 106 chr12 35466642 35466685 -108815804 + LTR16A1 LTR ERVL 4 48 -409 1912 127 3 29 chr12 35466685 35467000 -108815489 - AluSx SINE Alu -5 307 1 246 275 35 106 chr12 35467000 35467098 -108815391 + LTR16A1 LTR ERVL 48 135 -322 326 61 20 0 chr12 35468347 35468396 -108814093 + (TG)n Simple_repeat Simple_repeat 2 51 0 1769 119 48 7 chr12 35469843 35470112 -108812377 + AluSx SINE Alu 28 307 -5 29 0 0 0 chr12 35470247 35470276 -108812213 + AT_rich Low_complexity Low_complexity 1 29 0 383 256 69 115 chr12 35470834 35471182 -108811307 - HAL1 LINE L1 -1233 1274 943 888 248 40 25 chr12 35472369 35472643 -108809846 + L1ME1 LINE L1 5614 5891 -275 224 304 38 25 chr12 35472833 35472912 -108809577 + L2 LINE L2 3185 3264 -8 1610 234 56 14 chr12 35472941 35473461 -108809028 + MLT1E LTR MaLR 13 585 -8 250 62 62 42 chr12 35473713 35473761 -108808728 + L1PA13 LINE L1 6114 6162 -1 184 333 64 0 chr12 35474243 35474321 -108808168 + MIR SINE MIR 102 184 -78 1811 132 53 4 chr12 35476534 35476815 -108805674 - AluJb SINE Alu -17 295 1 674 139 80 94 chr12 35477896 35477942 -108804547 + LTR37A LTR ERV1 1 46 -380 2474 47 0 3 chr12 35477942 35478243 -108804246 - AluY SINE Alu -11 300 1 674 139 80 94 chr12 35478243 35478397 -108804092 + LTR37A LTR ERV1 46 198 -228 1386 207 85 0 chr12 35478429 35478757 -108803732 + MER67C LTR ERV1 9 364 -346 213 290 0 32 chr12 35478895 35478957 -108803532 + CT-rich Low_complexity Low_complexity 5 64 0 4023 102 11 86 chr12 35479039 35479757 -108802732 + MER4A LTR ERV1 1 664 0 371 165 63 0 chr12 35480693 35480772 -108801717 - MER34 LTR ERV1 -1 541 458 299 196 0 0 chr12 35480766 35480817 -108801672 - MER39 LTR ERV1 -656 51 1 * 22 0 0 0 chr12 35480940 35480962 -108801527 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr12 35481306 35481345 -108801144 + AT_rich Low_complexity Low_complexity 1 39 0 253 265 75 35 chr12 35481996 35482196 -108800293 - L1ME4a LINE L1 -4 6117 5910 230 229 0 105 chr12 35482248 35482353 -108800136 - L1ME4a LINE L1 -213 5908 5815 2196 117 0 0 chr12 35482424 35482722 -108799767 - AluSq SINE Alu -15 298 1 395 253 0 0 chr12 35482728 35482819 -108799670 - L1ME4a LINE L1 -512 5609 5519 508 269 48 18 chr12 35483204 35483371 -108799118 + MLT1I LTR MaLR 3 174 -235 233 342 56 25 chr12 35483407 35483568 -108798921 + MLT1I LTR MaLR 244 409 0 3481 91 5 58 chr12 35484015 35484587 -108797902 + L1PA13 LINE L1 5620 6161 -2 311 250 93 73 chr12 35484591 35484764 -108797725 + MLT1G LTR MaLR 114 354 -236 1127 171 18 18 chr12 35484764 35484992 -108797497 - L1MB3 LINE L1 0 6183 5956 311 250 93 73 chr12 35484992 35485077 -108797412 + MLT1G LTR MaLR 354 436 -154 801 161 23 0 chr12 35485524 35485654 -108796835 + FLAM_C SINE Alu 1 133 -10 520 325 61 39 chr12 35485933 35486293 -108796196 + MLT1I LTR MaLR 42 409 0 1712 187 36 17 chr12 35487075 35487433 -108795056 - MLT1A1 LTR MaLR 0 365 1 206 277 0 31 chr12 35488346 35488411 -108794078 - L2 LINE L2 -1896 1418 1356 24 67 0 0 chr12 35488972 35489017 -108793472 + AT_rich Low_complexity Low_complexity 1 45 0 6705 135 7 16 chr12 35489022 35489197 -108793292 - L1MA2 LINE L1 0 6304 6129 2348 109 0 3 chr12 35489197 35489510 -108792979 - AluSp SINE Alu -1 312 1 6705 135 7 16 chr12 35489510 35491414 -108791075 - L1MA2 LINE L1 -175 6129 4243 1891 208 20 3 chr12 35491424 35491780 -108790709 - LTR3 LTR ERVK -70 362 1 371 167 0 15 chr12 35491794 35491860 -108790629 - HERVK14 LTR ERVK -61 5884 5820 1089 183 5 5 chr12 35491876 35492089 -108790400 - HERVK14 LTR ERVK -1758 5485 5273 586 114 0 0 chr12 35492090 35492178 -108790311 - AluY SINE Alu -222 88 1 481 244 25 8 chr12 35492179 35492298 -108790191 - L1MCa LINE L1 -4244 2182 2062 252 0 0 0 chr12 35493202 35493230 -108789259 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 273 262 130 63 chr12 35493770 35494063 -108788426 + Charlie8 DNA MER1_type 26 1428 -989 327 342 58 64 chr12 35494964 35495341 -108787148 + HAL1b LINE L1 538 912 -436 324 241 61 70 chr12 35496130 35496358 -108786131 + L1M4 LINE L1 2784 3009 -3137 21 57 0 0 chr12 35496378 35496413 -108786076 + AT_rich Low_complexity Low_complexity 1 35 0 439 268 31 31 chr12 35496413 35496540 -108785949 + L2 LINE L2 3187 3313 0 257 204 0 17 chr12 35496855 35496931 -108785558 + L1M4 LINE L1 5771 5845 -319 * 978 241 159 25 chr12 35496927 35497426 -108785063 + L1ME3 LINE L1 5270 5838 -324 383 320 125 0 chr12 35497441 35497641 -108784848 + L1ME3 LINE L1 5898 6122 -40 1844 245 26 32 chr12 35497756 35498294 -108784195 + L1ME1 LINE L1 5614 6148 -18 292 188 14 14 chr12 35498330 35498399 -108784090 + L1MA10 LINE L1 6236 6304 -30 * 1788 181 58 17 chr12 35498397 35499006 -108783483 - L1ME LINE L1 -626 5540 4902 261 155 17 17 chr12 35499010 35499068 -108783421 + L1ME3A LINE L1 6111 6168 -2 350 301 143 36 chr12 35499998 35500194 -108782295 + L1MC/D LINE L1 5509 5725 -2083 195 129 0 0 chr12 35500210 35500241 -108782248 + (GGAA)n Simple_repeat Simple_repeat 1 31 0 304 297 54 9 chr12 35501734 35501845 -108780644 + MIR3 SINE MIR 89 204 -4 395 236 27 0 chr12 35501951 35502061 -108780428 - L1MC5 LINE L1 -48 7913 7801 625 249 121 8 chr12 35502099 35502348 -108780141 - L1MB8 LINE L1 -8 6170 5894 30 45 0 0 chr12 35503218 35503262 -108779227 + AT_rich Low_complexity Low_complexity 1 44 0 258 324 61 56 chr12 35504426 35504639 -108777850 - MIR SINE MIR -48 214 1 22 0 0 0 chr12 35504747 35504769 -108777720 + AT_rich Low_complexity Low_complexity 1 22 0 295 327 53 68 chr12 35504928 35505267 -108777222 - L2 LINE L2 -498 2816 2483 2189 119 0 0 chr12 35507519 35507813 -108774676 - AluSg SINE Alu -16 294 1 825 301 56 25 chr12 35507906 35508351 -108774138 - L1MEc LINE L1 -4583 1813 1355 676 208 63 79 chr12 35508346 35508726 -108773763 - L1MEc LINE L1 -3933 2463 2090 * 442 321 127 9 chr12 35509136 35509719 -108772770 - L1M4 LINE L1 -1198 4948 4297 211 225 0 0 chr12 35509800 35509840 -108772649 + (CATA)n Simple_repeat Simple_repeat 3 42 0 27 0 0 0 chr12 35510809 35510836 -108771653 + AT_rich Low_complexity Low_complexity 1 27 0 1496 60 0 37 chr12 35513662 35513878 -108768611 + L1PA5 LINE L1 5943 6150 -4 2568 171 133 30 chr12 35514056 35514660 -108767829 + MER39 LTR ERV1 16 681 -26 394 261 92 46 chr12 35516234 35516387 -108766102 - MER5B DNA MER1_type 0 178 19 334 277 47 61 chr12 35516387 35516535 -108765954 - MER5B DNA MER1_type -26 152 7 27 0 0 0 chr12 35516767 35516794 -108765695 + AT_rich Low_complexity Low_complexity 1 27 0 1138 229 100 32 chr12 35516862 35517233 -108765256 - MSTD LTR MaLR 0 396 1 254 312 13 0 chr12 35517255 35517332 -108765157 - MIR SINE MIR -57 151 74 2260 116 0 0 chr12 35518304 35518607 -108763882 - AluSx SINE Alu -9 303 1 274 236 14 28 chr12 35519122 35519194 -108763295 - L2 LINE L2 0 3313 3243 288 130 0 0 chr12 35520229 35520275 -108762214 + (CA)n Simple_repeat Simple_repeat 1 46 0 17209 127 8 3 chr12 35520549 35524061 -108758428 - L1PA8A LINE L1 -3 6128 2604 606 179 0 0 chr12 35524061 35524156 -108758333 - LTR12 LTR ERV1 -261 453 359 275 240 80 0 chr12 35524156 35524231 -108758258 - LTR30 LTR ERV1 -98 624 544 661 124 14 197 chr12 35524231 35524449 -108758040 - LTR12 LTR ERV1 -437 277 100 234 269 0 0 chr12 35524472 35524524 -108757965 - LTR30 LTR ERV1 -670 52 1 8531 203 6 29 chr12 35524525 35526213 -108756276 - L1P LINE L1 -3506 2640 1003 216 67 0 0 chr12 35526213 35526243 -108756246 + (TTG)n Simple_repeat Simple_repeat 1 30 0 8531 203 6 29 chr12 35526243 35526543 -108755946 - L1P LINE L1 -5143 1003 698 193 425 116 20 chr12 35528602 35528955 -108753534 + L2 LINE L2 2871 3257 -15 225 0 0 0 chr12 35528955 35528980 -108753509 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 192 148 0 0 chr12 35529193 35529220 -108753269 - L2 LINE L2 -20 3293 3267 22 0 0 0 chr12 35529256 35529278 -108753211 + AT_rich Low_complexity Low_complexity 1 22 0 834 235 156 26 chr12 35530244 35530738 -108751751 - L1MCa LINE L1 -5056 1885 1328 1789 191 36 3 chr12 35530790 35531177 -108751312 - L1MB4 LINE L1 0 6180 5781 217 143 36 18 chr12 35531177 35531227 -108751262 + (TA)n Simple_repeat Simple_repeat 1 51 0 328 241 46 11 chr12 35531230 35531317 -108751172 + L1MC4 LINE L1 6613 6702 -1340 313 207 0 0 chr12 35531319 35531377 -108751112 - L1MB4 LINE L1 -384 5787 5730 629 271 98 11 chr12 35531386 35531652 -108750837 - L1MCa LINE L1 -5156 1267 979 11377 214 54 35 chr12 35531903 35532345 -108750144 + L1MA9 LINE L1 2983 3415 -4150 16238 25 1 0 chr12 35532345 35535024 -108747465 + L1PA2 LINE L1 3476 6155 0 11377 214 54 35 chr12 35535024 35535180 -108747309 + L1MA9 LINE L1 3415 3567 -3998 198 0 0 0 chr12 35535180 35535202 -108747287 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 11377 214 54 35 chr12 35535202 35537911 -108744578 + L1MA9 LINE L1 3567 6364 -1201 1824 161 0 7 chr12 35537911 35538223 -108744266 + AluSx SINE Alu 1 310 0 11377 214 54 35 chr12 35538223 35538638 -108743851 + L1MA9 LINE L1 6364 6770 -795 251 167 0 20 chr12 35538663 35538728 -108743761 + L1MA9 LINE L1 7315 7375 -335 243 128 0 0 chr12 35538745 35538784 -108743705 + L1MA9 LINE L1 7362 7400 -331 587 155 86 0 chr12 35538784 35538900 -108743589 + L1MA9 LINE L1 7362 7487 -244 1924 164 137 8 chr12 35539051 35539430 -108743059 + MSTA LTR MaLR 1 428 0 9123 146 23 24 chr12 35539432 35541012 -108741477 + MSTA-int LTR MaLR 3 1580 0 1296 187 83 37 chr12 35541012 35541360 -108741129 + THE1B LTR MaLR 1 364 0 326 325 69 75 chr12 35541705 35542081 -108740408 - L1MC4a LINE L1 -1908 5900 5527 204 261 0 15 chr12 35542374 35542439 -108740050 + CT-rich Low_complexity Low_complexity 2 65 0 1675 126 103 0 chr12 35544123 35544385 -108738104 + AluSc SINE Alu 1 289 -20 237 170 64 11 chr12 35546727 35546821 -108735668 + (TA)n Simple_repeat Simple_repeat 2 100 0 678 169 40 0 chr12 35546822 35546970 -108735519 + L1M LINE L1 5269 5422 -742 1634 183 0 0 chr12 35548080 35548369 -108734120 - L1PA15 LINE L1 -196 5969 5681 1077 217 18 0 chr12 35548364 35548590 -108733899 - L1PA15 LINE L1 -1166 4980 4751 * 774 316 120 40 chr12 35548587 35549430 -108733059 - L1PA13 LINE L1 -5360 1427 445 * 419 75 0 0 chr12 35549438 35549490 -108732999 - THE1B LTR MaLR 0 364 313 2501 78 11 242 chr12 35549490 35549937 -108732552 - LTR14B LTR ERVK 0 608 1 1832 145 45 10 chr12 35549937 35550247 -108732242 - THE1B LTR MaLR -43 321 1 2081 251 14 2 chr12 35550255 35550682 -108731807 - L1PA13 LINE L1 -6355 432 1 4900 211 23 11 chr12 35550696 35551893 -108730596 - L1 LINE L1 -2579 3567 2357 1384 206 99 14 chr12 35551895 35552260 -108730229 - MSTD LTR MaLR 0 396 1 4377 256 75 31 chr12 35552264 35553846 -108728643 - MSTD-int LTR MaLR -4 1731 83 589 172 152 0 chr12 35553842 35553987 -108728502 + L1MA9 LINE L1 6146 6312 0 * 495 176 0 0 chr12 35554144 35554229 -108728260 - MER67D LTR ERV1 -429 85 1 575 29 0 0 chr12 35554406 35554475 -108728014 + L1PA4 LINE L1 6079 6147 -8 819 281 0 5 chr12 35554677 35554873 -108727616 + L1ME1 LINE L1 5967 6161 -5 23 0 0 0 chr12 35555204 35555227 -108727262 + AT_rich Low_complexity Low_complexity 1 23 0 2198 89 7 10 chr12 35555238 35555529 -108726960 + AluSc SINE Alu 1 290 -19 774 242 45 10 chr12 35555604 35555802 -108726687 + MLT1E3 LTR MaLR 1 205 -419 306 326 98 16 chr12 35556304 35556488 -108726001 - MLT1L LTR MaLR -221 394 196 2573 232 31 70 chr12 35557579 35558852 -108723637 + L1ME1 LINE L1 4942 6160 -6 1527 208 170 0 chr12 35559254 35559643 -108722846 + MSTB2 LTR MaLR 3 457 0 3104 173 28 33 chr12 35560475 35561198 -108721291 + MER54B LTR ERVL 3 793 0 388 261 168 26 chr12 35561311 35561537 -108720952 + L1ME3 LINE L1 5859 6116 -46 21 36 0 0 chr12 35561630 35561658 -108720831 + AT_rich Low_complexity Low_complexity 1 28 0 713 132 0 0 chr12 35562582 35562688 -108719801 - L1PA16 LINE L1 -171 5995 5890 973 183 0 27 chr12 35562688 35562873 -108719616 + L1PA16 LINE L1 5986 6166 0 267 343 28 56 chr12 35565086 35565229 -108717260 + MIR SINE MIR 20 158 -104 279 323 15 0 chr12 35565236 35565301 -108717188 + MIR SINE MIR 3 68 -194 1116 221 29 4 chr12 35566318 35566599 -108715890 + L1ME1 LINE L1 4668 4955 -1191 2651 269 56 5 chr12 35566601 35567427 -108715062 + L1ME1 LINE L1 5294 6161 -5 210 323 77 8 chr12 35567535 35567665 -108714824 - MIR SINE MIR -56 206 68 846 262 137 4 chr12 35567797 35568068 -108714421 - MLT1J2 LTR MaLR -139 311 5 194 61 0 30 chr12 35568471 35568504 -108713985 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 1441 6 0 0 chr12 35568520 35568681 -108713808 - L1PA4 LINE L1 -300 5855 5695 1031 16 0 0 chr12 35568675 35568801 -108713688 + L1P1 LINE L1 5358 5483 -672 * 1272 81 5 0 chr12 35571217 35571402 -108711087 - L1P LINE L1 -3665 2481 2296 943 228 13 43 chr12 35571834 35572066 -108710423 + Charlie1a DNA MER1_type 2 226 -1229 394 297 42 80 chr12 35572190 35572453 -108710036 + L1MC4a LINE L1 5716 5968 -153 2061 154 9 0 chr12 35572552 35572889 -108709600 - L1PA15 LINE L1 -7 6158 5819 40095 69 34 2 chr12 35573737 35579712 -108702777 - L1PA13 LINE L1 -7 6156 5 366 198 58 0 chr12 35579714 35579835 -108702654 + L1 LINE L1 3396 3523 -2623 746 222 47 18 chr12 35579835 35580006 -108702483 + THE1B LTR MaLR 1 176 -188 11767 124 26 38 chr12 35580128 35583140 -108699349 - L1P3 LINE L1 -3444 3017 8 8705 182 19 8 chr12 35583263 35585801 -108696688 - L1PA13 LINE L1 -2 6161 3603 277 312 49 29 chr12 35585910 35586115 -108696374 - Tigger4(Zombi) DNA MER2_type -1332 1399 1191 390 306 92 30 chr12 35586341 35586677 -108695812 - Tigger4(Zombi) DNA MER2_type -1747 984 628 2858 66 129 2 chr12 35587195 35587589 -108694900 - MLT2A1 LTR ERVL 0 444 1 342 218 40 20 chr12 35587853 35587954 -108694535 - MER46C DNA MER2_type -229 109 7 315 341 69 6 chr12 35587969 35588142 -108694347 + L1M4 LINE L1 2441 2624 -3522 2639 98 42 2 chr12 35588209 35588615 -108693874 + L1MA2 LINE L1 5883 6304 0 22 35 0 0 chr12 35588789 35588818 -108693671 + AT_rich Low_complexity Low_complexity 1 29 0 1398 272 13 27 chr12 35588905 35589460 -108693029 + L1MC/D LINE L1 2325 2871 -3275 304 246 0 0 chr12 35589492 35589553 -108692936 + L1MC/D LINE L1 5671 5731 -628 1507 58 11 0 chr12 35589764 35589954 -108692535 - L1PA7 LINE L1 -15 6139 5948 719 278 70 26 chr12 35591757 35592027 -108690462 + LTR16A LTR ERVL 76 357 -93 627 110 0 10 chr12 35592817 35592917 -108689572 - L1PA10 LINE L1 -1 6167 6069 21 57 0 0 chr12 35593464 35593499 -108688990 + AT_rich Low_complexity Low_complexity 1 35 0 322 290 85 17 chr12 35593515 35593691 -108688798 - LTR67 LTR ERVL -16 541 354 202 383 35 30 chr12 35594003 35594233 -108688256 - L2 LINE L2 -1964 1350 1120 217 343 86 0 chr12 35594432 35594537 -108687952 - L2 LINE L2 -2486 828 715 2297 109 0 0 chr12 35594595 35594897 -108687592 + AluSg SINE Alu 1 302 -8 525 222 22 0 chr12 35596110 35596245 -108686244 + L1MA8 LINE L1 6144 6281 -10 2572 178 16 0 chr12 35596589 35597078 -108685411 + L1PA8 LINE L1 2599 3095 -3051 212 190 121 17 chr12 35597946 35598004 -108684485 + L2 LINE L2 2304 2367 -947 1516 262 77 14 chr12 35598179 35598687 -108683802 - L1MC4 LINE L1 -258 7784 7245 2354 231 34 12 chr12 35598703 35599284 -108683205 - L1MC4 LINE L1 -958 7084 6491 224 258 0 30 chr12 35600142 35600208 -108682281 + GA-rich Low_complexity Low_complexity 2 65 0 340 234 0 26 chr12 35601691 35601768 -108680721 + MER5A DNA MER1_type 16 90 -99 693 329 96 23 chr12 35602395 35602781 -108679708 + LTR16B LTR ERVL 37 450 -14 2426 145 14 3 chr12 35603934 35604483 -108678006 + L1PA8 LINE L1 3989 6172 0 * 5678 166 20 6 chr12 35604476 35606449 -108676040 + L1PB2 LINE L1 4151 6150 -1 270 0 0 0 chr12 35607182 35607212 -108675277 + (TG)n Simple_repeat Simple_repeat 2 31 0 982 224 41 4 chr12 35608735 35609033 -108673456 + L1ME1 LINE L1 5120 5424 -742 * 1229 244 85 46 chr12 35609029 35609546 -108672943 + L1ME1 LINE L1 5625 6161 -5 2532 222 6 5 chr12 35609621 35610287 -108672202 + L1PB1 LINE L1 4370 5036 -1110 5326 125 18 38 chr12 35610445 35611598 -108670891 + L1PB1 LINE L1 5021 6151 0 26 30 0 0 chr12 35611650 35611683 -108670806 + AT_rich Low_complexity Low_complexity 1 33 0 204 97 0 0 chr12 35611948 35611979 -108670510 + (CA)n Simple_repeat Simple_repeat 2 32 0 397 291 29 34 chr12 35613643 35613818 -108668671 - L1M4 LINE L1 -816 5330 5157 41490 48 2 1 chr12 35613847 35619324 -108663165 + L1P1 LINE L1 2 5483 -672 2307 177 11 11 chr12 35619488 35619946 -108662543 + L1MC1 LINE L1 5858 6315 -18 947 256 14 14 chr12 35620830 35621107 -108661382 + L1ME3A LINE L1 5887 6163 -7 2612 216 31 3 chr12 35622479 35623117 -108659372 - L1 LINE L1 -3198 2948 2293 3443 222 25 5 chr12 35623121 35623658 -108658831 + L1 LINE L1 2951 3515 -2631 189 0 0 0 chr12 35623658 35623679 -108658810 + (TAA)n Simple_repeat Simple_repeat 1 21 0 3443 222 25 5 chr12 35623679 35624081 -108658408 + L1 LINE L1 3515 3908 -2238 831 273 159 62 chr12 35625880 35626016 -108656473 - L2 LINE L2 -1345 1969 1848 378 0 0 0 chr12 35626016 35626058 -108656431 + (TA)n Simple_repeat Simple_repeat 2 43 0 831 273 159 62 chr12 35626058 35626488 -108656001 - L2 LINE L2 -1466 1848 1348 1817 225 126 14 chr12 35627409 35628141 -108654348 - L1ME3 LINE L1 -189 5973 5150 608 244 58 24 chr12 35628563 35628768 -108653721 + MLT1J LTR MaLR 293 504 -7 2089 68 4 0 chr12 35629791 35630057 -108652432 - AluY SINE Alu -44 267 1 1875 150 7 3 chr12 35630059 35630352 -108652137 - AluSx SINE Alu -17 295 2 406 234 9 9 chr12 35630862 35630969 -108651520 - MLT1J2 LTR MaLR -339 111 5 280 347 10 0 chr12 35631255 35631353 -108651136 + MIR SINE MIR 53 151 -111 7299 41 1 1 chr12 35631363 35632492 -108649997 + L1PA4 LINE L1 5025 6153 -2 331 321 123 48 chr12 35632585 35632918 -108649571 - L1ME3 LINE L1 -1161 4985 4628 502 241 43 0 chr12 35633019 35633135 -108649354 + L1MD2 LINE L1 6000 6120 -239 5380 158 11 5 chr12 35633378 35634358 -108648131 - L1MC1 LINE L1 -9 6324 5339 2621 150 62 0 chr12 35634577 35635016 -108647473 + LTR28 LTR ERV1 1 466 -554 529 198 10 0 chr12 35635014 35635115 -108647374 + LTR28 LTR ERV1 919 1020 0 * 234 189 24 55 chr12 35636315 35636442 -108646047 + (TATAA)n Simple_repeat Simple_repeat 5 127 0 27 29 0 0 chr12 35637537 35637571 -108644918 + AT_rich Low_complexity Low_complexity 1 34 0 2140 130 3 0 chr12 35637718 35638017 -108644472 - AluY SINE Alu -11 300 1 761 257 11 42 chr12 35638450 35638715 -108643774 + MER46C DNA MER2_type 66 322 -16 316 331 31 8 chr12 35638944 35639074 -108643415 + L2 LINE L2 2670 2802 -512 262 381 32 16 chr12 35639111 35639300 -108643189 + L2 LINE L2 2857 3048 -224 5355 146 31 18 chr12 35639584 35640825 -108641664 - L1MA6 LINE L1 0 6300 5046 2192 130 0 0 chr12 35640829 35641130 -108641359 - AluSq SINE Alu -12 301 1 2034 120 7 0 chr12 35642383 35642682 -108639807 - THE1B LTR MaLR -63 301 1 10132 116 25 41 chr12 35642682 35644288 -108638201 - THE1B-int LTR MaLR 0 1580 1 2265 146 6 0 chr12 35644288 35644650 -108637839 - THE1B LTR MaLR 0 364 1 1690 255 20 16 chr12 35644654 35645105 -108637384 + LTR40a LTR ERVL 67 519 0 2423 184 45 4 chr12 35645621 35646136 -108636353 - L1MB1 LINE L1 0 6168 5633 6446 12 0 0 chr12 35647090 35647815 -108634674 + L1PA2 LINE L1 5431 6155 0 278 297 47 27 chr12 35648679 35648827 -108633662 + L1M3c LINE L1 1 151 -5990 306 390 21 5 chr12 35648830 35649020 -108633469 + L1M3c LINE L1 223 415 -5726 658 105 137 8 chr12 35649395 35649519 -108632970 + L1MA9 LINE L1 5789 5928 -384 2424 140 0 11 chr12 35649519 35649898 -108632591 + THE1C LTR MaLR 1 375 0 2446 99 8 3 chr12 35649898 35650271 -108632218 + THE1C-int LTR MaLR 1 375 -1205 17059 110 16 8 chr12 35650280 35653719 -108628770 - L1PA7 LINE L1 -1 6153 2687 577 290 29 7 chr12 35653954 35654230 -108628259 - L1M1 LINE L1 -4383 3182 2901 1375 119 45 34 chr12 35654259 35654528 -108627961 - L1MA2 LINE L1 -8 6296 6025 9787 204 29 8 chr12 35654513 35656762 -108625727 - L1 LINE L1 -1214 6351 4054 1221 184 68 8 chr12 35656762 35657012 -108625477 + MSTA LTR MaLR 1 265 -163 9362 123 13 3 chr12 35657015 35658367 -108624122 - THE1C-int LTR MaLR -215 1365 1 1887 160 35 19 chr12 35658367 35658736 -108623753 - THE1C LTR MaLR 0 375 1 703 214 7 7 chr12 35658737 35658891 -108623598 + MSTA-int LTR MaLR 1427 1580 0 1798 169 102 8 chr12 35658891 35659282 -108623207 + MSTA LTR MaLR 1 428 0 12355 166 81 23 chr12 35659282 35662059 -108620430 - L1 LINE L1 -3507 4058 1103 480 148 41 41 chr12 35662053 35662175 -108620314 - L1 LINE L1 -7430 135 14 * 3830 230 30 27 chr12 35662177 35663179 -108619310 - L1M4c LINE L1 -4516 2137 1406 1985 134 3 3 chr12 35663179 35663507 -108618982 + AluSg SINE Alu 2 329 0 3830 230 30 27 chr12 35663507 35663721 -108618768 - L1M4c LINE L1 -5247 1406 1194 461 311 76 48 chr12 35663992 35664243 -108618246 + MIR SINE MIR 1 258 -4 256 313 48 0 chr12 35664946 35665029 -108617460 - MIR SINE MIR -175 87 1 357 273 87 43 chr12 35666092 35666253 -108616236 - MIR SINE MIR -46 216 49 27 49 0 0 chr12 35666321 35666362 -108616127 + AT_rich Low_complexity Low_complexity 1 41 0 363 293 24 32 chr12 35666577 35666700 -108615789 + L2 LINE L2 3192 3313 0 24 32 0 0 chr12 35666751 35666782 -108615707 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr12 35666949 35666986 -108615503 + AT_rich Low_complexity Low_complexity 1 37 0 457 238 0 0 chr12 35667621 35667726 -108614763 - L1MEc LINE L1 -5561 835 731 302 189 15 61 chr12 35667727 35667859 -108614630 + (CATATA)n Simple_repeat Simple_repeat 1 126 0 307 211 14 0 chr12 35668860 35668931 -108613558 - MIR SINE MIR -14 248 177 412 342 89 5 chr12 35668957 35669147 -108613342 + MIR SINE MIR 51 256 -6 2113 78 7 3 chr12 35669175 35669459 -108613030 - AluY SINE Alu -26 285 1 21 36 0 0 chr12 35670598 35670626 -108611863 + AT_rich Low_complexity Low_complexity 1 28 0 208 0 62 0 chr12 35670822 35670854 -108611635 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1863 18 5 0 chr12 35670854 35671075 -108611414 - L1PA4 LINE L1 -18 6137 5916 22 0 0 0 chr12 35671604 35671626 -108610863 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 35671883 35671904 -108610585 + AT_rich Low_complexity Low_complexity 1 21 0 928 133 9 81 chr12 35672085 35672296 -108610193 + L1M1 LINE L1 3021 3216 -4349 1171 269 5 33 chr12 35672297 35672691 -108609798 - L2 LINE L2 -2284 1030 648 1910 75 0 0 chr12 35673212 35673464 -108609025 - L1PA7 LINE L1 -3 6151 5900 556 76 0 0 chr12 35673722 35673801 -108608688 - L1MC/D LINE L1 -902 5431 5353 * 13697 213 29 25 chr12 35673793 35674248 -108608241 - L1PA7 LINE L1 -1 6153 5701 282 56 0 0 chr12 35674248 35674284 -108608205 + (CA)n Simple_repeat Simple_repeat 2 37 0 13697 213 29 25 chr12 35674284 35674469 -108608020 - L1PA7 LINE L1 -453 5701 5518 180 0 0 0 chr12 35674469 35674489 -108608000 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 13697 213 29 25 chr12 35674489 35677198 -108605291 - L1PA7 LINE L1 -636 5518 2773 1948 83 93 17 chr12 35677198 35677487 -108605002 - AluY SINE Alu 0 311 1 13697 213 29 25 chr12 35677487 35678000 -108604489 - L1PA7 LINE L1 -3381 2773 2264 6113 237 35 13 chr12 35678011 35679990 -108602499 - L1MC/D LINE L1 -743 5403 3580 22 0 0 0 chr12 35680751 35680773 -108601716 + AT_rich Low_complexity Low_complexity 1 22 0 3252 245 100 54 chr12 35681753 35683188 -108599301 - L1MC4 LINE L1 -13 8029 6528 2010 248 75 57 chr12 35683244 35684215 -108598274 - L1ME2 LINE L1 -14 6150 5197 2337 91 10 0 chr12 35684215 35684524 -108597965 - AluSp SINE Alu -1 312 1 2010 248 75 57 chr12 35684524 35684938 -108597551 - L1ME2 LINE L1 -967 5197 4792 2429 57 7 3 chr12 35684938 35685239 -108597250 - AluY SINE Alu -9 302 1 2010 248 75 57 chr12 35685239 35685680 -108596809 - L1ME2 LINE L1 -1372 4792 4253 6997 54 2 3 chr12 35686021 35687255 -108595234 + L1PA5 LINE L1 4915 6147 -7 2233 277 91 16 chr12 35687266 35688190 -108594299 + L2 LINE L2 2205 3215 -98 206 339 121 0 chr12 35688686 35688810 -108593679 + MIR SINE MIR 49 187 -75 714 261 28 0 chr12 35689488 35689668 -108592821 - MIR SINE MIR -48 214 30 254 319 0 33 chr12 35690509 35690600 -108591889 - L2 LINE L2 -1 3312 3225 194 61 0 30 chr12 35690780 35690813 -108591676 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 1439 6 0 0 chr12 35690829 35690990 -108591499 - L1PA3 LINE L1 -300 5855 5695 1031 16 0 0 chr12 35690984 35691110 -108591379 + L1P1 LINE L1 5358 5483 -672 * 1273 81 5 0 chr12 35693527 35693712 -108588777 - L1P LINE L1 -3665 2481 2296 307 211 14 0 chr12 35693904 35693975 -108588514 - MIR SINE MIR -14 248 177 412 342 89 5 chr12 35694001 35694191 -108588298 + MIR SINE MIR 51 256 -6 2249 74 0 0 chr12 35694219 35694504 -108587985 - AluY SINE Alu -26 285 1 241 277 128 11 chr12 35694511 35694605 -108587884 - MIR SINE MIR -106 156 52 2471 242 13 32 chr12 35696199 35696752 -108585737 + MLT2B3 LTR ERVL 5 546 -8 1972 91 4 0 chr12 35697698 35697951 -108584538 + AluSp SINE Alu 51 304 -9 752 278 4 18 chr12 35698192 35698419 -108584070 + MER58A DNA MER1_type 1 224 0 447 330 17 23 chr12 35698460 35698633 -108583856 - MIR SINE MIR -14 248 77 210 37 0 0 chr12 35698792 35698819 -108583670 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 301 328 56 22 chr12 35699703 35699883 -108582606 + L1ME4a LINE L1 5935 6120 -1 201 140 53 0 chr12 35699942 35699999 -108582490 + (TA)n Simple_repeat Simple_repeat 2 61 0 210 184 0 20 chr12 35700005 35700054 -108582435 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 427 266 50 69 chr12 35700404 35700765 -108581724 + L1MC4a LINE L1 542 895 -5175 7929 167 8 4 chr12 35700771 35702187 -108580302 - L1PA10 LINE L1 -3127 3019 1599 13109 150 16 7 chr12 35702187 35705286 -108577203 + L1PA10 LINE L1 3037 6156 -12 24 0 0 0 chr12 35705286 35705310 -108577179 + AT_rich Low_complexity Low_complexity 1 24 0 1023 336 53 30 chr12 35705310 35706306 -108576183 + L1MC4a LINE L1 920 1938 -4323 327 282 0 9 chr12 35706462 35706572 -108575917 + L1MC4a LINE L1 2080 2188 -4073 1193 270 30 44 chr12 35706612 35707182 -108575307 + L1MC4a LINE L1 3575 4136 -1944 243 128 0 0 chr12 35707245 35707292 -108575197 + L1MC4 LINE L1 6659 6705 -1337 * 719 83 0 19 chr12 35707288 35707396 -108575093 + L1P4 LINE L1 5597 5702 -466 606 48 37 75 chr12 35707404 35707591 -108574898 + (TA)n Simple_repeat Simple_repeat 1 180 0 615 114 54 0 chr12 35707651 35707817 -108574672 + (TA)n Simple_repeat Simple_repeat 2 176 0 664 232 21 7 chr12 35707817 35707959 -108574530 - MER58A DNA MER1_type 0 162 19 1600 273 52 32 chr12 35707983 35708423 -108574066 + L1MC4a LINE L1 4188 4655 -1425 2451 62 7 3 chr12 35708423 35708728 -108573761 + AluY SINE Alu 1 306 -5 1600 273 52 32 chr12 35708728 35709129 -108573360 + L1MC4a LINE L1 4655 5046 -1034 2182 89 17 3 chr12 35709138 35709430 -108573059 + AluSp SINE Alu 1 296 -17 183 80 0 0 chr12 35709476 35709501 -108572988 + (GAAA)n Simple_repeat Simple_repeat 3 27 0 1402 294 29 42 chr12 35710363 35711347 -108571142 + L1MEc LINE L1 1380 2311 -3904 256 266 0 0 chr12 35711350 35711414 -108571075 + L1MEc LINE L1 3699 3762 -2453 869 182 13 7 chr12 35711723 35711877 -108570612 - FRAM SINE Alu -11 155 1 943 228 13 43 chr12 35713039 35713271 -108569218 + Charlie1a DNA MER1_type 2 226 -1229 394 297 42 80 chr12 35713395 35713658 -108568831 + L1MC4a LINE L1 5650 5902 -153 2061 154 9 0 chr12 35713757 35714094 -108568395 - L1PA15 LINE L1 -7 6158 5819 9641 176 36 18 chr12 35714942 35716092 -108566397 - L1PA13 LINE L1 -7 7594 6467 4797 70 12 2 chr12 35716092 35716735 -108565754 - L1PA6 LINE L1 0 6154 5505 9641 176 36 18 chr12 35716735 35718490 -108563999 - L1PA13 LINE L1 -1134 6467 4649 * 35368 109 26 14 chr12 35718486 35724585 -108557904 - L1PA8 LINE L1 0 6172 11 7201 212 18 14 chr12 35724601 35726902 -108555587 - L1PA13 LINE L1 -2922 4662 2360 675 159 0 0 chr12 35726902 35727009 -108555480 - U6 snRNA snRNA 0 107 1 259 360 51 34 chr12 35727442 35727620 -108554869 - L3 LINE CR1 -85 1492 1312 431 242 36 24 chr12 35728069 35728234 -108554255 + L1ME4a LINE L1 5583 5749 -372 1592 125 14 108 chr12 35728270 35728621 -108553868 + L1MA10 LINE L1 5922 6239 -95 260 87 406 0 chr12 35728873 35728942 -108553547 + L1MA10 LINE L1 6235 6331 -3 320 259 126 21 chr12 35728954 35729097 -108553392 + L1ME4a LINE L1 5798 5955 -166 203 279 0 16 chr12 35729119 35729180 -108553309 + GA-rich Low_complexity Low_complexity 4 63 0 1487 136 129 22 chr12 35729551 35729823 -108552666 - AluSx SINE Alu -11 301 1 703 285 0 0 chr12 35729897 35730048 -108552441 - MER5A DNA MER1_type -14 175 25 15709 95 14 1 chr12 35731804 35733984 -108548505 + L1P LINE L1 1 2209 -3937 * 22180 68 5 8 chr12 35733981 35736926 -108545563 + L1P LINE L1 39 2974 -3172 2996 246 77 19 chr12 35737052 35738311 -108544178 + L1M4c LINE L1 2302 3629 -2753 41710 43 22 2 chr12 35738335 35744356 -108538133 - L1PA3 LINE L1 -4 6151 5 2916 214 36 58 chr12 35744358 35744480 -108538009 + L1M4c LINE L1 3632 3755 -2627 2058 147 22 30 chr12 35744480 35744847 -108537642 + THE1B LTR MaLR 1 364 0 11157 113 8 0 chr12 35744847 35746415 -108536074 + THE1B-int LTR MaLR 1 1580 0 2060 144 22 35 chr12 35746415 35746784 -108535705 + THE1B LTR MaLR 1 364 0 2916 214 36 58 chr12 35746784 35747107 -108535382 + L1M4c LINE L1 3753 4082 -2300 4820 101 22 5 chr12 35747107 35747849 -108534640 + L1MA1 LINE L1 5549 6302 0 2916 214 36 58 chr12 35747849 35748351 -108534138 + L1M4c LINE L1 4082 4561 -1821 5356 109 22 0 chr12 35748403 35748764 -108533725 - L1PA13 LINE L1 -8 6155 5804 2377 127 5 24 chr12 35748764 35749134 -108533355 + THE1B LTR MaLR 2 364 0 5356 109 22 0 chr12 35749134 35750050 -108532439 - L1PA13 LINE L1 -359 5804 4855 2415 201 19 11 chr12 35750051 35750584 -108531905 + L1MA9 LINE L1 5407 5943 -369 318 26 0 0 chr12 35751757 35751796 -108530693 + (GA)n Simple_repeat Simple_repeat 1 39 0 * 360 0 0 0 chr12 35751795 35751835 -108530654 + (TG)n Simple_repeat Simple_repeat 2 41 0 181 319 14 29 chr12 35752414 35752483 -108530006 - MER5B DNA MER1_type -74 104 37 257 173 40 40 chr12 35752522 35752597 -108529892 - MER116 DNA Mariner 0 80 6 219 338 14 14 chr12 35752638 35752712 -108529777 - MER5A DNA MER1_type -63 126 53 4817 69 12 0 chr12 35753503 35754142 -108528347 - L1PA6 LINE L1 -3 6151 5505 8197 193 23 13 chr12 35754171 35755896 -108526593 - L1PA12 LINE L1 -1193 6391 4649 * 35383 109 26 14 chr12 35755892 35761991 -108520498 - L1PA8 LINE L1 0 6172 11 7281 212 18 14 chr12 35762007 35764307 -108518182 - L1PA12 LINE L1 -2922 4662 2360 675 159 0 0 chr12 35764307 35764414 -108518075 - U6 snRNA snRNA 0 107 1 259 360 51 34 chr12 35764847 35765025 -108517464 - L3 LINE CR1 -85 1492 1312 431 242 36 24 chr12 35765474 35765639 -108516850 + L1ME4a LINE L1 5583 5749 -372 1592 125 14 108 chr12 35765675 35766026 -108516463 + L1MA10 LINE L1 5922 6239 -95 260 87 406 0 chr12 35766278 35766347 -108516142 + L1MA10 LINE L1 6235 6331 -3 320 259 126 21 chr12 35766359 35766502 -108515987 + L1ME4a LINE L1 5798 5955 -166 203 279 0 16 chr12 35766524 35766585 -108515904 + GA-rich Low_complexity Low_complexity 4 63 0 1487 136 129 22 chr12 35766956 35767228 -108515261 - AluSx SINE Alu -11 301 1 703 285 0 0 chr12 35767302 35767453 -108515036 - MER5A DNA MER1_type -14 175 25 15639 99 12 1 chr12 35769209 35771392 -108511097 + L1P LINE L1 1 2209 -3937 * 41395 59 5 4 chr12 35771389 35777503 -108504986 + L1PA5 LINE L1 39 6154 0 349 294 142 41 chr12 35777862 35778080 -108504409 + MIR SINE MIR 23 262 0 1305 205 42 72 chr12 35779716 35780102 -108502387 + MLT1A2 LTR MaLR 1 374 0 1469 174 69 98 chr12 35780329 35780737 -108501752 + MSTD LTR MaLR 1 396 0 1426 241 71 49 chr12 35782950 35783444 -108499045 + MLT1D LTR MaLR 1 505 0 857 298 149 8 chr12 35784878 35785247 -108497242 + MLT1J LTR MaLR 77 497 -14 493 214 55 167 chr12 35786447 35786821 -108495668 + LTR28 LTR ERV1 1 1147 -101 23 0 0 0 chr12 35786996 35787019 -108495470 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 35787179 35787200 -108495289 + AT_rich Low_complexity Low_complexity 1 21 0 263 301 154 0 chr12 35789017 35789140 -108493349 + MIR SINE MIR 121 262 0 212 373 89 27 chr12 35789494 35789719 -108492770 + L3 LINE CR1 211 449 -1128 2357 91 54 23 chr12 35789722 35790075 -108492414 + THE1B LTR MaLR 1 364 0 2037 70 4 4 chr12 35790075 35790347 -108492142 + THE1B-int LTR MaLR 1 272 -1308 2228 249 79 28 chr12 35790349 35792091 -108490398 - L1M2 LINE L1 -4221 2886 1028 1396 207 0 29 chr12 35792091 35792371 -108490118 - L1M2 LINE L1 -6758 272 1 282 370 104 45 chr12 35792388 35792467 -108490022 + L3 LINE CR1 910 983 -594 2176 169 51 5 chr12 35792467 35792876 -108489613 + MSTA LTR MaLR 1 428 0 282 370 104 45 chr12 35792876 35793239 -108489250 + L3 LINE CR1 983 1378 -199 502 283 36 7 chr12 35793359 35793497 -108488992 + MIR SINE MIR 1 142 -120 817 279 30 7 chr12 35793501 35793802 -108488687 + MER46C DNA MER2_type 12 319 -19 2122 144 33 30 chr12 35793895 35794257 -108488232 - THE1B LTR MaLR 0 364 2 1147 62 0 0 chr12 35794744 35794888 -108487601 - AluY SINE Alu 0 311 168 2046 185 60 25 chr12 35795053 35795490 -108486999 - MSTB2 LTR MaLR -5 452 1 397 306 197 12 chr12 35796517 35796837 -108485652 - L2 LINE L2 -998 2316 1938 21 71 0 0 chr12 35797294 35797336 -108485153 + AT_rich Low_complexity Low_complexity 1 42 0 2498 201 34 17 chr12 35797420 35797947 -108484542 + MER89 LTR ERV1 1 536 -23 3367 120 12 2 chr12 35798148 35798657 -108483832 + MER75 DNA T2_type 1 514 0 633 286 39 0 chr12 35800270 35800452 -108482037 - MIR SINE MIR -2 260 72 356 160 0 0 chr12 35800648 35800698 -108481791 + MER75 DNA T2_type 22 71 -443 485 105 11 0 chr12 35800713 35800808 -108481681 + (CA)n Simple_repeat Simple_repeat 1 96 0 2330 47 47 3 chr12 35801055 35801353 -108481136 - AluY SINE Alu 0 311 1 909 240 90 49 chr12 35802566 35802933 -108479556 - LTR50 LTR ERVL 0 795 414 948 278 87 10 chr12 35802976 35803275 -108479214 - LTR50 LTR ERVL -472 323 2 2074 221 22 35 chr12 35803374 35803909 -108478580 - L1P LINE L1 -1919 4227 3700 1747 61 13 0 chr12 35803985 35804214 -108478275 - MER75 DNA T2_type -2 512 281 1296 195 57 39 chr12 35804230 35804564 -108477925 - L1P LINE L1 -2486 3660 3321 246 266 25 13 chr12 35805010 35805089 -108477400 + LTR33A LTR ERVL 444 523 0 831 315 36 18 chr12 35806046 35806376 -108476113 + LTR16B LTR ERVL 125 460 -4 1824 329 65 37 chr12 35806416 35807160 -108475329 + HERV16 LTR ERVL 61 840 -4156 5712 76 53 2 chr12 35807160 35807946 -108474543 + LTR12 LTR ERV1 1 826 0 1824 329 65 37 chr12 35807946 35808171 -108474318 + HERV16 LTR ERVL 840 1057 -3939 5391 146 37 41 chr12 35808996 35810486 -108472003 + L1M1 LINE L1 4124 5618 -685 824 0 0 0 chr12 35810555 35810649 -108471840 - L1PA3 LINE L1 -250 5905 5812 1955 13 0 0 chr12 35810649 35810898 -108471591 + L1PA3 LINE L1 5914 6162 0 1125 249 24 45 chr12 35811288 35811670 -108470819 + MLT1A2 LTR MaLR 1 374 0 592 262 6 6 chr12 35812165 35812348 -108470141 + L1MC/D LINE L1 5189 5371 -775 * 6651 85 10 0 chr12 35812344 35813265 -108469224 - L1PA7 LINE L1 -1116 5030 4101 6530 73 14 6 chr12 35813267 35814361 -108468128 + L1PA7 LINE L1 5041 6141 -13 572 51 0 0 chr12 35814365 35814443 -108468046 + L1MC/D LINE L1 5354 5431 -902 947 274 66 51 chr12 35814655 35815125 -108467364 - LTR33 LTR ERVL -3 518 42 2285 77 0 3 chr12 35815250 35815558 -108466931 + AluY SINE Alu 1 307 0 530 183 0 8 chr12 35815780 35815911 -108466578 + GA-rich Low_complexity Low_complexity 1 130 0 221 219 0 0 chr12 35816192 35816233 -108466256 + (CCCA)n Simple_repeat Simple_repeat 2 42 0 11598 36 3 0 chr12 35816330 35817761 -108464728 - L1P LINE L1 -2096 4050 2615 3817 37 2 0 chr12 35817761 35818216 -108464273 + L1PA3 LINE L1 5696 6152 -3 27 0 0 0 chr12 35818892 35818919 -108463570 + AT_rich Low_complexity Low_complexity 1 27 0 305 379 29 14 chr12 35819664 35819804 -108462685 - MIR3 SINE MIR -51 157 16 348 24 0 0 chr12 35820250 35820291 -108462198 + (CA)n Simple_repeat Simple_repeat 2 42 0 1038 238 113 32 chr12 35820291 35820670 -108461819 - HERVL68 LTR ERVL -337 2700 2291 230 326 11 22 chr12 35821235 35821324 -108461165 - MIR SINE MIR -105 157 70 224 59 29 0 chr12 35821518 35821552 -108460937 + (TAGA)n Simple_repeat Simple_repeat 3 37 0 318 327 39 70 chr12 35822246 35822503 -108459986 - MIR SINE MIR -2 260 12 594 239 133 28 chr12 35822643 35822861 -108459628 + L1ME1 LINE L1 36 276 -6120 1371 257 70 4 chr12 35822897 35823399 -108459090 + L1ME1 LINE L1 4708 5242 -973 691 86 0 0 chr12 35823406 35823499 -108458990 - HY3 scRNA scRNA -3 98 6 2481 225 76 38 chr12 35823531 35824467 -108458022 + L1ME1 LINE L1 5284 6231 -4 1639 188 70 25 chr12 35826129 35826345 -108456144 - MLT1B LTR MaLR 0 390 150 1520 189 17 28 chr12 35826345 35826509 -108455980 - AluJb SINE Alu -24 288 127 186 43 0 0 chr12 35826509 35826532 -108455957 + (TG)n Simple_repeat Simple_repeat 2 24 0 1520 189 17 28 chr12 35826532 35826658 -108455831 - AluJb SINE Alu -185 127 1 1639 188 70 25 chr12 35826658 35826796 -108455693 - MLT1B LTR MaLR -240 150 20 437 36 18 0 chr12 35826796 35826852 -108455637 + THE1C LTR MaLR 1 57 -318 * 1283 141 5 19 chr12 35826841 35827054 -108455435 + THE1C LTR MaLR 162 371 -4 324 70 0 0 chr12 35827128 35827171 -108455318 + (CA)n Simple_repeat Simple_repeat 1 43 0 25 0 0 0 chr12 35827467 35827492 -108454997 + AT_rich Low_complexity Low_complexity 1 25 0 736 307 167 25 chr12 35827493 35827972 -108454517 + L2 LINE L2 2347 2893 -421 489 324 155 7 chr12 35828053 35828331 -108454158 + L2 LINE L2 2995 3313 0 278 287 99 10 chr12 35830573 35830674 -108451815 - MIR SINE MIR -133 129 20 26 0 0 0 chr12 35831986 35832012 -108450477 + AT_rich Low_complexity Low_complexity 1 26 0 32 67 0 0 chr12 35832790 35832850 -108449639 + AT_rich Low_complexity Low_complexity 1 60 0 1333 202 0 4 chr12 35833255 35833488 -108449001 - AluJb SINE Alu -27 285 54 565 248 0 0 chr12 35833491 35833600 -108448889 - AluJo/FLAM SINE Alu -201 111 3 446 242 189 8 chr12 35833603 35833735 -108448754 - MER5A DNA MER1_type -6 183 28 733 224 16 42 chr12 35833748 35833940 -108448549 - MER5A DNA MER1_type 0 189 3 378 369 66 21 chr12 35834885 35835264 -108447225 + L2 LINE L2 2249 2644 -670 226 97 0 97 chr12 35836790 35836966 -108445523 + (TA)n Simple_repeat Simple_repeat 2 160 0 269 161 34 101 chr12 35836968 35837117 -108445372 + (TATAG)n Simple_repeat Simple_repeat 3 141 0 249 14 68 54 chr12 35837117 35837191 -108445298 + (TA)n Simple_repeat Simple_repeat 2 76 0 214 375 83 73 chr12 35837587 35837984 -108444505 + L2 LINE L2 2826 3226 -46 350 351 26 13 chr12 35838070 35838224 -108444265 - MIR3 SINE MIR -21 187 32 183 100 0 0 chr12 35838235 35838265 -108444224 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1472 218 7 18 chr12 35838267 35838552 -108443937 - AluJo SINE Alu -30 282 1 354 395 36 0 chr12 35840101 35840268 -108442221 + MIR3 SINE MIR 8 180 -28 430 239 0 0 chr12 35840367 35840459 -108442030 - L2 LINE L2 0 3313 3222 1021 363 20 25 chr12 35840927 35841517 -108440972 + L1PA13 LINE L1 788 1374 -6200 325 257 21 71 chr12 35841629 35841769 -108440720 + L1PA13 LINE L1 2054 2186 -5395 808 324 6 9 chr12 35842013 35842331 -108440158 + L1PA13 LINE L1 2191 2507 -5074 2122 139 5 52 chr12 35842335 35842717 -108439772 - THE1B LTR MaLR 0 364 1 11088 101 10 38 chr12 35842719 35844342 -108438147 - THE1B-int LTR MaLR -2 1578 1 2082 158 5 30 chr12 35844342 35844715 -108437774 - THE1B LTR MaLR 0 364 1 6816 238 65 49 chr12 35844723 35847707 -108434782 + L1PA13 LINE L1 2529 5538 -2046 357 264 163 0 chr12 35847902 35848031 -108434458 + MIR SINE MIR 68 217 -45 279 294 35 56 chr12 35848401 35848544 -108433945 + MIR SINE MIR 49 188 -74 1519 218 112 3 chr12 35849461 35849820 -108432669 - MLT1D LTR MaLR -123 382 1 273 376 91 11 chr12 35849831 35850017 -108432472 + MIR SINE MIR 30 230 -32 33 0 0 0 chr12 35850105 35850138 -108432351 + AT_rich Low_complexity Low_complexity 1 33 0 369 0 0 0 chr12 35850301 35850342 -108432147 + (TG)n Simple_repeat Simple_repeat 2 42 0 1536 176 44 4 chr12 35850349 35850621 -108431868 - AluSx SINE Alu -29 283 1 36 23 0 0 chr12 35850869 35850912 -108431577 + AT_rich Low_complexity Low_complexity 1 43 0 1432 119 5 0 chr12 35850912 35851114 -108431375 + AluSg/x SINE Alu 82 284 -25 213 39 0 0 chr12 35851114 35851140 -108431349 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 269 265 84 0 chr12 35851148 35851231 -108431258 - MER3 DNA MER1_type -108 101 12 212 287 253 0 chr12 35851313 35851400 -108431089 + L2 LINE L2 3204 3312 -1 23 0 0 0 chr12 35853013 35853036 -108429453 + AT_rich Low_complexity Low_complexity 1 23 0 277 339 54 45 chr12 35854523 35854744 -108427745 - MLT1I LTR MaLR -55 354 132 53 17 0 0 chr12 35854785 35854845 -108427644 + AT_rich Low_complexity Low_complexity 1 60 0 338 129 18 13 chr12 35855229 35855303 -108427186 + L1ME1 LINE L1 6102 6184 0 186 191 0 0 chr12 35855479 35855521 -108426968 + A-rich Low_complexity Low_complexity 1 42 0 27 0 0 0 chr12 35855996 35856023 -108426466 + AT_rich Low_complexity Low_complexity 1 27 0 980 231 92 3 chr12 35856134 35856416 -108426073 - MER5C DNA MER1_type -6 318 12 495 114 0 0 chr12 35856622 35856701 -108425788 - L1PA14 LINE L1 -5 6156 6078 973 286 43 6 chr12 35856712 35857062 -108425427 + L1ME LINE L1 5310 5672 -498 324 0 0 0 chr12 35857074 35857110 -108425379 + (CA)n Simple_repeat Simple_repeat 2 37 0 859 289 28 73 chr12 35857110 35857618 -108424871 - L1MCc LINE L1 -5288 1135 651 514 231 97 30 chr12 35859240 35859374 -108423115 - MER5A DNA MER1_type -46 143 1 1863 129 42 58 chr12 35859438 35859819 -108422670 - THE1C LTR MaLR 0 375 1 270 309 31 0 chr12 35859819 35859916 -108422573 + MER81 DNA DNA 9 108 -6 2203 168 57 14 chr12 35859916 35860339 -108422150 + MER65A LTR ERV1 1 441 -4 24 67 0 0 chr12 35860423 35860468 -108422021 + AT_rich Low_complexity Low_complexity 1 45 0 322 255 41 10 chr12 35860794 35860892 -108421597 - MLT1I LTR MaLR -3 406 306 191 302 23 35 chr12 35861367 35861453 -108421036 - MER5A DNA MER1_type -80 109 25 * 206 189 170 19 chr12 35861423 35861476 -108421013 - MER5B DNA MER1_type -73 105 45 215 396 60 7 chr12 35861633 35861782 -108420707 + MIR3 SINE MIR 49 205 -3 270 0 0 0 chr12 35863184 35863214 -108419275 + (T)n Simple_repeat Simple_repeat 1 30 0 370 306 134 34 chr12 35864294 35864503 -108417986 + MIR SINE MIR 1 230 -32 295 330 170 9 chr12 35865332 35865444 -108417045 - L2 LINE L2 -9 3263 3134 863 276 22 13 chr12 35865466 35865698 -108416791 + MIR SINE MIR 19 252 -10 254 324 137 7 chr12 35866009 35866148 -108416341 - L2 LINE L2 -459 2855 2699 22 0 0 0 chr12 35867974 35867996 -108414493 + AT_rich Low_complexity Low_complexity 1 22 0 588 63 13 0 chr12 35868212 35868291 -108414198 - MADE1 DNA Mariner 0 80 1 992 208 75 106 chr12 35868587 35869061 -108413428 - MLT1C LTR MaLR 0 467 1 3369 166 23 12 chr12 35869138 35869788 -108412701 - L1MA7 LINE L1 -16 6275 5619 240 254 111 0 chr12 35869918 35869981 -108412508 - MIR3 SINE MIR -15 193 124 2438 86 0 3 chr12 35870670 35870983 -108411506 - AluSq SINE Alu -1 312 1 1428 109 19 9 chr12 35872713 35872924 -108409565 - MER30 DNA MER1_type -17 213 1 209 232 14 0 chr12 35873572 35873641 -108408848 + (TA)n Simple_repeat Simple_repeat 2 71 0 620 161 29 51 chr12 35873644 35873781 -108408708 - FLAM_C SINE Alu -4 139 6 563 315 91 26 chr12 35873917 35874149 -108408340 - MIR SINE MIR -8 254 8 24 0 0 0 chr12 35874167 35874191 -108408298 + AT_rich Low_complexity Low_complexity 1 24 0 390 360 167 22 chr12 35874191 35874699 -108407790 + L3 LINE CR1 993 1574 -3 619 258 163 5 chr12 35875368 35875558 -108406931 - MIR SINE MIR -32 230 11 356 316 83 18 chr12 35876663 35876831 -108405658 - L1ME LINE L1 -5618 452 274 286 275 84 23 chr12 35876845 35876976 -108405513 - L1ME LINE L1 -5843 227 89 2597 99 11 8 chr12 35877199 35877562 -108404927 - THE1B LTR MaLR 0 364 1 493 297 40 7 chr12 35877964 35878169 -108404320 - MIR SINE MIR -8 254 2 305 248 60 38 chr12 35878190 35878323 -108404166 - L2 LINE L2 -2763 551 416 351 44 0 0 chr12 35878697 35878742 -108403747 + (TG)n Simple_repeat Simple_repeat 2 46 0 2386 65 14 0 chr12 35879731 35880023 -108402466 + AluSp SINE Alu 1 296 -17 2371 54 3 3 chr12 35880031 35880326 -108402163 + AluY SINE Alu 1 295 -16 327 250 12 25 chr12 35881435 35881515 -108400974 + MIR SINE MIR 23 101 -107 298 345 143 0 chr12 35882788 35882907 -108399582 + L2 LINE L2 3137 3272 0 23 0 0 0 chr12 35882945 35882968 -108399521 + AT_rich Low_complexity Low_complexity 1 23 0 531 68 0 0 chr12 35883180 35883253 -108399236 - Alu SINE Alu -15 294 222 200 248 16 25 chr12 35883318 35883439 -108399050 + (TTA)n Simple_repeat Simple_repeat 3 122 0 33 66 0 0 chr12 35883452 35883513 -108398976 + AT_rich Low_complexity Low_complexity 1 61 0 21 0 0 0 chr12 35883728 35883749 -108398740 + AT_rich Low_complexity Low_complexity 1 21 0 355 235 59 24 chr12 35884624 35884709 -108397780 - MLT1H LTR MaLR -51 498 411 22 35 0 0 chr12 35885086 35885115 -108397374 + AT_rich Low_complexity Low_complexity 1 29 0 734 234 26 75 chr12 35886279 35886506 -108395983 - MIR SINE MIR -16 246 31 467 271 107 37 chr12 35887843 35887951 -108394538 - L2 LINE L2 -48 3265 3166 2009 143 39 3 chr12 35887951 35888287 -108394202 - MER7A DNA MER2_type 0 346 1 467 271 107 37 chr12 35888287 35888422 -108394067 - L2 LINE L2 -147 3166 3005 1606 271 45 11 chr12 35888447 35888975 -108393514 + L1PB1 LINE L1 6 551 -6312 3338 100 35 81 chr12 35888975 35889595 -108392894 + LTR14B LTR ERVK 17 608 0 6153 146 153 5 chr12 35889627 35891456 -108391033 + L1PB1 LINE L1 605 2832 -4031 2149 178 12 34 chr12 35891452 35894391 -108388098 + L1PB1 LINE L1 3842 6859 -8 * 294 313 67 56 chr12 35894483 35894678 -108387811 - MIR SINE MIR -58 204 8 674 292 75 4 chr12 35895693 35895933 -108386556 - L2 LINE L2 -486 2828 2572 283 304 11 0 chr12 35895971 35896063 -108386426 + L2 LINE L2 3180 3272 0 234 312 22 22 chr12 35896524 35896662 -108385827 + L1MC4a LINE L1 5884 6021 -1787 453 299 63 35 chr12 35897488 35897662 -108384827 - MIR3 SINE MIR -11 197 19 22 70 0 0 chr12 35897803 35897846 -108384643 + AT_rich Low_complexity Low_complexity 1 43 0 10305 207 56 22 chr12 35899328 35899358 -108383131 + L1MC3 LINE L1 4978 5006 -2779 1307 161 35 121 chr12 35899358 35899755 -108382734 + MLT1A1 LTR MaLR 1 363 -2 10305 207 56 22 chr12 35899755 35902097 -108380392 + L1MC3 LINE L1 5006 7455 -330 1658 221 28 6 chr12 35902097 35902454 -108380035 - MLT1A1 LTR MaLR 0 365 1 10305 207 56 22 chr12 35902454 35902797 -108379692 + L1MC3 LINE L1 7455 7785 0 345 269 23 47 chr12 35902840 35903045 -108379444 + HAL1 LINE L1 1962 2232 -275 391 315 54 0 chr12 35903297 35903427 -108379062 + MIR3 SINE MIR 61 197 -11 215 245 245 20 chr12 35904481 35904583 -108377906 + MIR SINE MIR 8 132 -130 231 312 71 105 chr12 35904780 35905046 -108377443 - L2 LINE L2 -788 2526 2270 306 346 73 11 chr12 35905174 35905353 -108377136 + L2 LINE L2 2293 2482 -832 552 279 0 0 chr12 35905507 35905672 -108376817 + L1ME3A LINE L1 5123 5287 -859 549 263 22 22 chr12 35905676 35905904 -108376585 + L1ME3A LINE L1 5352 5579 -591 14450 70 1 3 chr12 35905909 35907755 -108374734 + L1PA4 LINE L1 2 1842 -4304 35303 37 18 1 chr12 35907756 35913780 -108368709 - L1PA3 LINE L1 0 6155 2 29353 41 4 0 chr12 35913780 35918089 -108364400 + L1PA4 LINE L1 1832 6152 -3 1347 268 102 15 chr12 35918099 35918637 -108363852 + L1ME3A LINE L1 5571 6155 -15 24 0 0 0 chr12 35918856 35918880 -108363609 + AT_rich Low_complexity Low_complexity 1 24 0 5404 54 0 2 chr12 35919521 35920151 -108362338 + L1PA5 LINE L1 5525 6153 -1 215 30 0 30 chr12 35920303 35920336 -108362153 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 2289 107 0 0 chr12 35920792 35921092 -108361397 + AluSg SINE Alu 4 303 -7 186 321 36 0 chr12 35921246 35921302 -108361187 - MIR SINE MIR -160 102 45 246 32 0 0 chr12 35921457 35921488 -108361001 + (CA)n Simple_repeat Simple_repeat 2 32 0 190 305 0 84 chr12 35921589 35921684 -108360805 + MIR SINE MIR 65 151 -111 23 0 0 0 chr12 35921773 35921796 -108360693 + AT_rich Low_complexity Low_complexity 1 23 0 800 167 27 27 chr12 35923136 35923286 -108359203 + L1PB4 LINE L1 6005 6154 -2 22 0 0 0 chr12 35923403 35923425 -108359064 + AT_rich Low_complexity Low_complexity 1 22 0 1396 183 10 55 chr12 35923802 35924091 -108358398 - AluJo SINE Alu -36 276 1 43354 51 10 0 chr12 35924174 35930267 -108352222 + L1PA4 LINE L1 1 6150 -5 267 275 58 50 chr12 35930267 35930387 -108352102 + MLT1L LTR MaLR 129 249 -366 512 262 75 122 chr12 35930528 35931021 -108351468 - L2 LINE L2 0 3313 2844 506 289 44 6 chr12 35931156 35931315 -108351174 + MLT1L LTR MaLR 447 611 -4 201 265 118 0 chr12 35932293 35932361 -108350128 + MIR SINE MIR 55 130 -78 1305 218 37 17 chr12 35932399 35932755 -108349734 + L1MB7 LINE L1 5570 5932 -252 553 211 56 72 chr12 35932751 35932931 -108349558 + L1MA5A LINE L1 5762 5938 -359 * 1506 211 59 9 chr12 35932797 35933138 -108349351 + L1PA16 LINE L1 5795 6152 -14 1322 77 33 83 chr12 35933137 35933378 -108349111 - L1MA1 LINE L1 -265 5899 5776 * 1001 52 0 0 chr12 35934481 35934597 -108347892 + L1PA2 LINE L1 6038 6153 -2 2318 190 28 31 chr12 35934712 35935170 -108347319 - MLT2C2 LTR ERVL 0 464 8 402 331 68 25 chr12 35935248 35935411 -108347078 - MIR SINE MIR -72 190 21 1942 150 3 0 chr12 35935679 35935972 -108346517 + AluSq SINE Alu 1 294 -19 1768 100 62 8 chr12 35937026 35937285 -108345204 + L1P5 LINE L1 5519 5791 -360 303 203 0 0 chr12 35937295 35937359 -108345130 + (TA)n Simple_repeat Simple_repeat 1 64 0 847 145 0 0 chr12 35937359 35937483 -108345006 - AluSq SINE Alu -109 204 81 361 248 241 0 chr12 35937636 35937773 -108344716 - L1ME3A LINE L1 -58 6112 5943 1152 246 71 51 chr12 35940005 35940456 -108342033 - MLT1C LTR MaLR -2 465 6 18705 45 12 0 chr12 35940756 35942956 -108339533 + HERV17 LTR ERV1 3794 6019 -2607 322 26 0 0 chr12 35942949 35942988 -108339501 + HERV17 LTR ERV1 7510 7548 -1078 * 2444 58 0 0 chr12 35942978 35943270 -108339219 + HERV17 LTR ERV1 8335 8626 0 2377 56 43 31 chr12 35943270 35943592 -108338897 + LTR17 LTR ERV1 1 326 -454 246 32 0 0 chr12 35943593 35943624 -108338865 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 237 87 48 63 chr12 35944777 35944903 -108337586 + (TATAA)n Simple_repeat Simple_repeat 5 128 0 290 167 61 18 chr12 35944921 35945035 -108337454 + (TA)n Simple_repeat Simple_repeat 2 120 0 243 0 0 0 chr12 35948179 35948206 -108334283 + (A)n Simple_repeat Simple_repeat 1 27 0 441 306 105 36 chr12 35948389 35948763 -108333726 + L1M2 LINE L1 674 1147 -5702 8078 38 0 11 chr12 35950847 35951754 -108330735 + MER11D LTR ERVK 1 897 0 1586 69 0 25 chr12 35952116 35952355 -108330134 + AluY SINE Alu 83 316 0 1264 243 94 55 chr12 35953352 35953579 -108328910 - L1M4 LINE L1 -2130 4016 3799 952 213 0 0 chr12 35953579 35953734 -108328755 - FRAM SINE Alu -11 155 1 1264 243 94 55 chr12 35953734 35954104 -108328385 - L1M4 LINE L1 -2347 3799 3396 13225 58 4 1 chr12 35955517 35957196 -108325293 + L1P LINE L1 1262 2945 -3201 2964 33 12 0 chr12 35957196 35957650 -108324839 - L1P2 LINE L1 -540 5615 5156 618 266 0 0 chr12 35958436 35958564 -108323925 + FLAM_A SINE Alu 10 137 -5 721 168 110 7 chr12 35958731 35958886 -108323603 - MER6 DNA MER2_type 0 865 695 10118 45 3 2 chr12 35958987 35960232 -108322257 + L1P LINE L1 3946 5192 -954 2147 230 34 8 chr12 38960232 38960766 -105321723 - HERVL74 LTR ERVL -2426 3259 2712 2162 233 34 19 chr12 38960799 38961326 -105321163 - HERVL74 LTR ERVL -3043 2642 2108 1720 179 3 10 chr12 38961327 38961623 -105320866 + AluJo SINE Alu 1 294 -18 1328 206 79 0 chr12 38961810 38962077 -105320412 - HERVL74 LTR ERVL -3583 2102 1815 1848 214 106 14 chr12 38962077 38962511 -105319978 - MLT2B1 LTR ERVL -46 474 1 247 105 0 0 chr12 38962511 38962548 -105319941 - U5 snRNA snRNA -76 40 4 5844 160 18 65 chr12 38962548 38965057 -105317432 + L1PB1 LINE L1 3817 6151 0 2218 225 71 56 chr12 38965107 38965356 -105317133 - HERVL74 LTR ERVL -3898 1787 1543 1542 207 20 20 chr12 38965356 38965661 -105316828 + AluJo SINE Alu 1 305 -7 2218 225 71 56 chr12 38965661 38966105 -105316384 - HERVL74 LTR ERVL -4142 1543 1084 1026 103 0 22 chr12 38966147 38966331 -105316158 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 845 155 0 6 chr12 38966336 38966504 -105315985 + CT-rich Low_complexity Low_complexity 1 167 0 1034 139 0 6 chr12 38966509 38966689 -105315800 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 586 215 108 6 chr12 38966709 38966867 -105315622 - HERVL74 LTR ERVL -2590 966 793 265 261 92 0 chr12 38966948 38967013 -105315476 + tRNA-Met-i tRNA tRNA 3 73 -2 1365 143 74 0 chr12 38967070 38967287 -105315202 + HUERS-P1 LTR ERV1 6348 6580 -957 * 1899 64 8 4 chr12 38967286 38967551 -105314938 + HUERS-P1 LTR ERV1 4557 4822 -1441 402 205 13 0 chr12 38967551 38967629 -105314860 + MSTB LTR MaLR 29 107 -319 1390 172 115 23 chr12 38967631 38967969 -105314520 + MSTA LTR MaLR 47 357 -71 4773 101 12 12 chr12 38967995 38968686 -105313803 - L1PA10 LINE L1 -2 6166 5476 * 19539 41 3 0 chr12 38968681 38971870 -105310619 - L1PA4 LINE L1 -1 6154 2951 2221 108 0 0 chr12 38971871 38972166 -105310323 - AluSx SINE Alu -17 295 1 185 224 52 149 chr12 38972534 38972668 -105309821 - L2 LINE L2 0 3272 3152 192 77 0 0 chr12 38972714 38972740 -105309749 + (T)n Simple_repeat Simple_repeat 1 26 0 469 189 0 10 chr12 38972740 38972879 -105309610 - LTR40a LTR ERVL -103 416 237 351 0 0 0 chr12 38972879 38972918 -105309571 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 4621 32 152 2 chr12 38972934 38973501 -105308988 - SVA Other Other -10 1376 725 180 0 0 0 chr12 38973938 38973958 -105308531 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1090 193 68 49 chr12 38974184 38974449 -105308040 + AluJo SINE Alu 9 278 -34 851 126 20 7 chr12 38974546 38974697 -105307792 - MER53 DNA DNA -1 188 36 23 0 0 0 chr12 38975525 38975548 -105306941 + AT_rich Low_complexity Low_complexity 1 23 0 716 191 0 0 chr12 38975802 38975928 -105306561 - FLAM_C SINE Alu -17 126 1 618 233 124 48 chr12 38976096 38976452 -105306037 + L1ME LINE L1 606 988 -5082 448 289 54 20 chr12 38976518 38976667 -105305822 + L3 LINE CR1 377 530 -1047 367 313 39 34 chr12 38977034 38977213 -105305276 + MER5A DNA MER1_type 1 180 -9 359 160 330 0 chr12 38977331 38977431 -105305058 - MER20 DNA MER1_type -81 138 6 2186 117 0 0 chr12 38979987 38980285 -105302204 + AluSx SINE Alu 1 298 -14 1039 149 12 0 chr12 38980614 38980775 -105301714 - FRAM SINE Alu -18 158 1 21 36 0 0 chr12 38982037 38982065 -105300424 + AT_rich Low_complexity Low_complexity 1 28 0 277 191 0 0 chr12 38983006 38983053 -105299436 + tRNA-Arg-CGC tRNA tRNA 2 48 -28 24 0 0 0 chr12 38983098 38983122 -105299367 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr12 38983170 38983194 -105299295 + AT_rich Low_complexity Low_complexity 1 24 0 854 236 57 94 chr12 38983281 38983683 -105298806 + L1MC4a LINE L1 5597 5983 -1825 234 253 33 22 chr12 38984391 38984482 -105298007 - L1ME4a LINE L1 -51 6070 5979 227 273 0 0 chr12 38985346 38985401 -105297088 - MER112 DNA MER1_type -25 235 181 562 199 58 19 chr12 38985450 38985606 -105296883 - MER112 DNA MER1_type -98 162 1 21 0 0 0 chr12 38986078 38986099 -105296390 + AT_rich Low_complexity Low_complexity 1 21 0 280 160 0 202 chr12 38986702 38986761 -105295728 - MER33 DNA MER1_type -2505 80 45 1643 173 21 14 chr12 38986761 38987045 -105295444 + AluJo SINE Alu 9 294 -18 280 160 0 202 chr12 38987045 38987079 -105295410 - MER33 DNA MER1_type -2540 45 6 24 53 0 0 chr12 38988319 38988357 -105294132 + AT_rich Low_complexity Low_complexity 1 38 0 915 202 149 0 chr12 38989441 38989649 -105292840 - L1MD2 LINE L1 -46 6313 6075 1016 181 6 0 chr12 38989680 38989851 -105292638 + FRAM SINE Alu 1 171 -5 2218 98 3 10 chr12 38990001 38990297 -105292192 - AluSg SINE Alu -16 294 1 310 255 27 122 chr12 38990502 38990796 -105291693 + L1MC5 LINE L1 7620 7885 -76 22 0 0 0 chr12 38990905 38990927 -105291562 + AT_rich Low_complexity Low_complexity 1 22 0 1840 156 59 36 chr12 38990932 38991540 -105290949 + L1M3 LINE L1 4945 5556 -624 317 203 0 13 chr12 38991540 38991619 -105290870 + L1MB3 LINE L1 6093 6170 -13 21 71 0 0 chr12 38991810 38991852 -105290637 + AT_rich Low_complexity Low_complexity 1 42 0 26 30 0 0 chr12 38991883 38991916 -105290573 + AT_rich Low_complexity Low_complexity 1 33 0 1689 165 7 10 chr12 38992517 38992808 -105289681 + AluJo SINE Alu 18 307 -5 473 319 95 37 chr12 38993409 38993735 -105288754 + L1ME LINE L1 36 380 -6016 4005 247 137 43 chr12 38994078 38994338 -105288151 + L1ME LINE L1 2435 2669 -3546 2117 100 7 23 chr12 38994338 38994639 -105287850 + AluSq SINE Alu 3 298 -15 4005 247 137 43 chr12 38994639 38995051 -105287438 + L1ME LINE L1 2669 3041 -3174 1355 117 75 0 chr12 38995051 38995265 -105287224 - MER30 DNA MER1_type 0 230 1 4005 247 137 43 chr12 38995265 38997087 -105285402 + L1ME LINE L1 3041 5237 -978 1787 81 0 0 chr12 38997087 38997309 -105285180 + AluY SINE Alu 81 302 -9 4005 247 137 43 chr12 38997309 38997347 -105285142 + L1ME LINE L1 5237 5270 -945 570 189 9 0 chr12 38997346 38997457 -105285032 + L1ME LINE L1 5613 5724 -509 * 213 167 42 0 chr12 38998173 38998221 -105284268 + CT-rich Low_complexity Low_complexity 2 51 0 603 255 47 7 chr12 38998416 38998565 -105283924 + MIR SINE MIR 17 171 -91 2916 164 77 19 chr12 38998566 38999201 -105283288 + L1MB7 LINE L1 5497 6168 -16 224 282 28 14 chr12 38999231 38999302 -105283187 + MIR SINE MIR 191 262 0 294 333 40 32 chr12 38999818 38999944 -105282545 - MIR SINE MIR -130 132 6 315 281 102 8 chr12 39001822 39001950 -105280539 + MIR SINE MIR 119 258 -4 347 288 48 34 chr12 39002770 39002916 -105279573 - MER5A DNA MER1_type -6 183 36 317 293 40 47 chr12 39002786 39002936 -105279553 + MER5A DNA MER1_type 37 185 -4 * 4617 125 13 25 chr12 39003681 39004085 -105278404 + L1PA16 LINE L1 5393 5800 -366 2217 160 59 10 chr12 39004085 39004491 -105277998 - MSTA LTR MaLR -2 426 1 4617 125 13 25 chr12 39004491 39004749 -105277740 + L1PA16 LINE L1 5800 6047 -119 1931 147 133 13 chr12 39004749 39005131 -105277358 - MSTA LTR MaLR 0 428 1 4617 125 13 25 chr12 39005131 39005241 -105277248 + L1PA16 LINE L1 6047 6157 -9 37 69 0 0 chr12 39005241 39005313 -105277176 + AT_rich Low_complexity Low_complexity 1 72 0 180 0 0 0 chr12 39005942 39005962 -105276527 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 692 170 150 14 chr12 39006420 39006567 -105275922 + MER58A DNA MER1_type 34 200 -24 1847 82 4 4 chr12 39006900 39007193 -105275296 + AluY SINE Alu 39 331 0 454 326 8 8 chr12 39007712 39007841 -105274648 - MER5A DNA MER1_type -1 188 60 1275 194 39 46 chr12 39007845 39008257 -105274232 - LTR37A LTR ERV1 0 426 18 297 207 13 3 chr12 39008780 39008858 -105273631 - L1MA6 LINE L1 0 7716 7642 988 188 41 5 chr12 39008863 39009060 -105273429 - L1MA6 LINE L1 -293 7426 7223 785 161 121 0 chr12 39009067 39009216 -105273273 + MSTA LTR MaLR 1 167 -261 702 212 18 42 chr12 39009195 39009360 -105273129 + MSTA LTR MaLR 268 428 0 * 8809 188 35 9 chr12 39009360 39011581 -105270908 - L1MA6 LINE L1 -510 7209 4851 1459 200 48 14 chr12 39011581 39011871 -105270618 - AluJo SINE Alu -5 307 8 8809 188 35 9 chr12 39011871 39013418 -105269071 - L1MA6 LINE L1 -2868 4851 3345 940 216 74 50 chr12 39013674 39014019 -105268470 - MER67C LTR ERV1 -3 511 173 355 241 18 62 chr12 39014020 39014132 -105268357 - MLT1I LTR MaLR -240 169 63 231 79 158 0 chr12 39014248 39014286 -105268203 - L1M2 LINE L1 -549 5751 5708 307 329 36 14 chr12 39014602 39014742 -105267747 + MIR SINE MIR 30 172 -90 731 202 0 0 chr12 39016606 39016735 -105265754 - FLAM_C SINE Alu -4 129 1 215 353 26 17 chr12 39017151 39017267 -105265222 + MIR SINE MIR 24 140 -122 192 324 67 0 chr12 39017442 39017547 -105264942 - MIR SINE MIR -71 191 80 234 89 36 18 chr12 39018034 39018090 -105264399 + (TA)n Simple_repeat Simple_repeat 1 57 0 1616 197 79 37 chr12 39018321 39018803 -105263686 - MLT1D LTR MaLR -3 502 1 1028 214 52 108 chr12 39019124 39019511 -105262978 - MLT1A1 LTR MaLR 0 365 1 286 301 0 11 chr12 39020043 39020136 -105262353 + LTR67 LTR ERVL 434 525 -32 907 300 74 38 chr12 39020977 39021394 -105261095 - MLT1K LTR MaLR -10 578 147 538 310 29 12 chr12 39021396 39021567 -105260922 - MER91A DNA MER1_type 0 196 23 233 292 102 66 chr12 39021579 39021716 -105260773 - MLT1K LTR MaLR -430 158 17 7953 232 45 36 chr12 39022133 39024431 -105258058 + L1MA9 LINE L1 2295 4571 -2135 408 204 32 11 chr12 39024431 39024524 -105257965 + MER2 DNA MER2_type 1 95 -250 343 203 16 0 chr12 39024524 39024588 -105257901 - MER2 DNA MER2_type 0 345 281 7953 232 45 36 chr12 39024588 39025951 -105256538 + L1MA9 LINE L1 4571 6033 -673 1621 178 45 0 chr12 39025951 39026238 -105256251 + AluJo SINE Alu 1 300 -12 7953 232 45 36 chr12 39026238 39026912 -105255577 + L1MA9 LINE L1 6033 6700 -6 1407 200 90 1 chr12 39027090 39027554 -105254935 - Charlie1b DNA MER1_type 0 523 22 1006 189 40 78 chr12 39027967 39028263 -105254226 - AluJo SINE Alu -21 291 7 1494 191 14 10 chr12 39028331 39028619 -105253870 - AluJb SINE Alu -23 289 1 33 0 0 0 chr12 39028888 39028921 -105253568 + AT_rich Low_complexity Low_complexity 1 33 0 867 237 98 40 chr12 39029994 39030268 -105252221 - MLT1A2 LTR MaLR 0 374 85 255 271 113 18 chr12 39030632 39030812 -105251677 - MIR SINE MIR -49 213 1 2153 159 78 8 chr12 39031715 39032099 -105250390 - Tigger1 DNA MER2_type -942 1476 1066 1239 233 46 0 chr12 39032101 39032265 -105250224 - AluJb SINE Alu -16 296 112 207 0 0 0 chr12 39032265 39032288 -105250201 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1239 233 46 0 chr12 39032288 39032406 -105250083 - AluJb SINE Alu -200 112 1 816 199 27 0 chr12 39032864 39033010 -105249479 + AluJo SINE Alu 1 150 -162 1944 140 3 3 chr12 39033206 39033491 -105248998 + AluSq SINE Alu 3 287 -26 2025 142 0 0 chr12 39033733 39034035 -105248454 + AluSq SINE Alu 1 302 0 21 36 0 0 chr12 39034211 39034239 -105248250 + AT_rich Low_complexity Low_complexity 1 28 0 1597 171 0 38 chr12 39034998 39035290 -105247199 + AluJo SINE Alu 1 281 -31 297 0 0 0 chr12 39035291 39035324 -105247165 + (TC)n Simple_repeat Simple_repeat 2 34 0 352 123 27 0 chr12 39035324 39035397 -105247092 + (TA)n Simple_repeat Simple_repeat 1 75 0 950 254 112 40 chr12 39035399 39035880 -105246609 + L1P4 LINE L1 4650 5095 -1073 1641 137 105 14 chr12 39035880 39036165 -105246324 + AluSx SINE Alu 1 311 -1 950 254 112 40 chr12 39036165 39036449 -105246040 + L1P4 LINE L1 5095 5357 -811 2241 141 0 22 chr12 39036449 39036812 -105245677 - THE1A LTR MaLR 0 355 1 11200 114 4 1 chr12 39036812 39038387 -105244102 - THE1A-int LTR MaLR 0 1580 1 2469 108 3 43 chr12 39038387 39038757 -105243732 - THE1A LTR MaLR 0 355 1 950 254 112 40 chr12 39038757 39039075 -105243414 + L1P4 LINE L1 5356 5804 -364 1204 186 63 107 chr12 39039452 39039834 -105242655 + MLT1A1 LTR MaLR 1 365 0 297 0 0 0 chr12 39040038 39040071 -105242418 + (TG)n Simple_repeat Simple_repeat 2 34 0 250 182 18 0 chr12 39040076 39040131 -105242358 + CT-rich Low_complexity Low_complexity 1 56 0 279 93 0 0 chr12 39040135 39040178 -105242311 + (TG)n Simple_repeat Simple_repeat 2 44 0 2112 288 36 44 chr12 39040878 39041916 -105240573 + SST1 Satellite centromeric 1 1029 -534 700 207 29 33 chr12 39044466 39044671 -105237818 + MIR SINE MIR 64 262 0 * 1015 243 28 0 chr12 39044670 39044921 -105237568 + MIR SINE MIR 5 262 0 218 344 11 11 chr12 39045349 39045442 -105237047 - MIR SINE MIR -76 132 40 358 256 160 0 chr12 39045773 39045929 -105236560 - MIR SINE MIR -12 250 70 345 290 132 87 chr12 39046351 39046754 -105235735 + MLT1J2 LTR MaLR 9 429 -21 2002 153 0 3 chr12 39046818 39047112 -105235377 + AluSx SINE Alu 1 293 -19 393 349 40 0 chr12 39047153 39047328 -105235161 - MIR SINE MIR -32 230 49 289 227 133 0 chr12 39047575 39047650 -105234839 - MIR3 SINE MIR -48 160 76 2536 156 13 9 chr12 39048350 39048817 -105233672 - L1MB7 LINE L1 0 6184 5716 233 178 0 68 chr12 39049353 39049426 -105233063 - L2 LINE L2 -83 3230 3163 252 238 131 49 chr12 39049690 39049812 -105232677 - MIR SINE MIR -67 195 64 2039 140 6 10 chr12 39049881 39050195 -105232294 - AluSq SINE Alu 0 313 1 2001 117 34 24 chr12 39050843 39051134 -105231355 + AluSq SINE Alu 1 294 -19 700 176 0 0 chr12 39051143 39051251 -105231238 - FLAM_A SINE Alu -34 108 1 604 231 87 12 chr12 39051264 39051437 -105231052 - MIR SINE MIR -64 198 13 270 225 180 18 chr12 39052014 39052125 -105230364 - L2 LINE L2 -2 3270 3142 353 236 198 62 chr12 39052476 39052718 -105229771 + LTR33 LTR ERVL 12 286 -235 342 288 32 16 chr12 39052770 39052895 -105229594 + LTR33 LTR ERVL 390 516 -5 285 114 0 0 chr12 39053234 39053278 -105229211 - MIR SINE MIR -62 146 103 493 233 124 45 chr12 39053395 39053597 -105228892 + MIR SINE MIR 23 240 -22 283 235 62 0 chr12 39054498 39054579 -105227910 + MIR3 SINE MIR 108 193 -15 498 333 7 0 chr12 39055774 39055918 -105226571 + L2 LINE L2 3127 3271 -1 2179 127 7 0 chr12 39056256 39056563 -105225926 - AluSx SINE Alu -3 309 1 506 348 63 21 chr12 39056564 39056796 -105225693 - L2 LINE L2 -8 3305 3052 2277 105 0 0 chr12 39056796 39057125 -105225364 + AluSp SINE Alu 1 329 0 506 348 63 21 chr12 39057125 39057224 -105225265 - L2 LINE L2 -261 3052 2959 365 273 182 0 chr12 39057365 39057508 -105224981 + MER5A DNA MER1_type 21 189 0 425 225 95 35 chr12 39058246 39058415 -105224074 + MIR SINE MIR 13 191 -71 1690 153 73 0 chr12 39058415 39058676 -105223813 + AluJb SINE Alu 1 280 -32 266 229 0 0 chr12 39058748 39058796 -105223693 + MIR SINE MIR 37 84 -124 2090 134 3 3 chr12 39058833 39059138 -105223351 - AluSx SINE Alu -7 305 1 264 325 56 0 chr12 39059139 39059265 -105223224 + MIR3 SINE MIR 70 202 -6 227 54 27 0 chr12 39059613 39059650 -105222839 + (TG)n Simple_repeat Simple_repeat 2 39 0 343 317 48 0 chr12 39059944 39060089 -105222400 - L2 LINE L2 -20 3252 3101 1881 166 3 16 chr12 39062460 39062768 -105219721 - AluJb SINE Alu -8 304 1 474 263 53 38 chr12 39063180 39063313 -105219176 - L2 LINE L2 -1 3271 3137 573 226 83 33 chr12 39063330 39063511 -105218978 - L2 LINE L2 -2 3311 3122 2002 129 0 3 chr12 39064424 39064711 -105217778 - AluSx SINE Alu -5 307 22 1383 137 99 99 chr12 39064717 39065010 -105217479 - AluJo SINE Alu -11 301 9 364 228 109 0 chr12 39065501 39065593 -105216896 + L2 LINE L2 3202 3303 -10 198 331 83 24 chr12 39065565 39065734 -105216755 - L2 LINE L2 -783 2531 2353 * 22 88 0 0 chr12 39067287 39067344 -105215145 + AT_rich Low_complexity Low_complexity 1 57 0 334 217 19 29 chr12 39068401 39068562 -105213927 - MIR SINE MIR -2 260 29 770 99 9 0 chr12 39068671 39068782 -105213707 + HY1 scRNA scRNA 1 112 0 204 292 21 0 chr12 39068821 39068869 -105213620 + MIR SINE MIR 37 85 -123 661 279 60 0 chr12 39068974 39069157 -105213332 + MIR SINE MIR 59 252 -10 2199 124 0 3 chr12 39069338 39069644 -105212845 + AluSx SINE Alu 1 305 -7 210 158 18 105 chr12 39069839 39069896 -105212593 + MIR3 SINE MIR 157 208 0 1342 250 113 26 chr12 39072234 39072411 -105210078 + L2 LINE L2 2537 2697 -616 2076 139 0 0 chr12 39072411 39072699 -105209790 + AluSg SINE Alu 1 288 -22 1342 250 113 26 chr12 39072699 39073241 -105209248 + L2 LINE L2 2697 3290 -23 209 276 16 123 chr12 39073600 39073843 -105208646 + L3b LINE CR1 1178 1394 -189 242 294 64 37 chr12 39074561 39074670 -105207819 - MIR3 SINE MIR -86 122 11 414 253 11 0 chr12 39074925 39075016 -105207473 + MIR SINE MIR 56 147 -115 317 230 180 0 chr12 39076646 39076746 -105205743 + L2 LINE L2 3153 3270 -2 396 310 19 0 chr12 39076747 39076905 -105205584 + MIR3 SINE MIR 48 208 0 23 0 0 0 chr12 39077369 39077392 -105205097 + GC_rich Low_complexity Low_complexity 1 23 0 208 337 41 20 chr12 39077635 39077733 -105204756 + MIR SINE MIR 44 143 -119 998 229 24 43 chr12 39078592 39078775 -105203714 - MIR SINE MIR -2 260 82 2059 123 2 121 chr12 39078775 39079189 -105203300 + MER47A DNA MER2_type 1 365 -1 998 229 24 43 chr12 39079189 39079258 -105203231 - MIR SINE MIR -180 82 13 415 267 68 78 chr12 39079196 39079387 -105203102 + MIR SINE MIR 13 201 -61 * 479 269 48 41 chr12 39079545 39079690 -105202799 - MIR SINE MIR -90 172 27 929 128 23 41 chr12 39080508 39080637 -105201852 + MER5B DNA MER1_type 9 136 -42 2281 110 3 3 chr12 39080637 39080947 -105201542 + AluSq SINE Alu 1 310 -3 929 128 23 41 chr12 39080947 39080989 -105201500 + MER5B DNA MER1_type 136 177 -1 595 276 198 0 chr12 39081146 39081363 -105201126 - MIR SINE MIR -1 261 2 339 78 0 0 chr12 39084079 39084130 -105198359 + (TC)n Simple_repeat Simple_repeat 2 52 0 910 211 0 0 chr12 39084482 39084648 -105197841 + FRAM SINE Alu 1 166 0 186 43 0 0 chr12 39085072 39085095 -105197394 + (TCTCCC)n Simple_repeat Simple_repeat 1 23 0 10080 29 0 198 chr12 39085096 39086837 -105195652 + SVA Other Other 3 1407 0 373 191 0 0 chr12 39086844 39086912 -105195577 - MER53 DNA DNA 0 189 122 186 127 32 48 chr12 39087153 39087216 -105195273 + C-rich Low_complexity Low_complexity 1 62 0 183 80 0 0 chr12 39088715 39088740 -105193749 + (TG)n Simple_repeat Simple_repeat 1 25 0 202 91 0 45 chr12 39088823 39088867 -105193622 + (TAA)n Simple_repeat Simple_repeat 1 42 0 468 35 0 0 chr12 39089891 39089949 -105192540 + (CA)n Simple_repeat Simple_repeat 1 58 0 554 198 0 78 chr12 39091437 39091654 -105190835 + SST1 Satellite centromeric 1363 1562 -1 215 233 17 0 chr12 39091678 39091738 -105190751 + CT-rich Low_complexity Low_complexity 2 62 0 2506 266 51 54 chr12 39092568 39094476 -105188013 - SST1 Satellite centromeric -13 2190 251 260 51 0 26 chr12 39094476 39094515 -105187974 + (CCCCAG)n Simple_repeat Simple_repeat 2 39 0 2506 266 51 54 chr12 39094515 39094766 -105187723 - SST1 Satellite centromeric -1952 251 1 222 220 17 0 chr12 39095506 39095565 -105186924 + GA-rich Low_complexity Low_complexity 2 61 0 324 119 0 0 chr12 39095565 39095624 -105186865 + (CA)n Simple_repeat Simple_repeat 2 60 0 2389 266 69 54 chr12 39095645 39096917 -105185572 - SST1 Satellite centromeric -11 1552 252 213 65 0 0 chr12 39096917 39096948 -105185541 + (CCCCAG)n Simple_repeat Simple_repeat 3 33 0 2389 266 69 54 chr12 39096948 39097204 -105185285 - SST1 Satellite centromeric -1311 252 1 967 199 5 5 chr12 39097495 39101346 -105181143 + ALR/Alpha Satellite centromeric 1 3850 -29 263 184 11 0 chr12 39102001 39102088 -105180401 + (CA)n Simple_repeat Simple_repeat 1 88 0 370 291 62 64 chr12 39102094 39102483 -105180006 - SST1 Satellite centromeric -28 1535 1148 413 297 67 61 chr12 39102909 39103447 -105179042 - SST1 Satellite centromeric -891 672 132 240 59 0 0 chr12 39104535 39104569 -105177920 + (CA)n Simple_repeat Simple_repeat 1 34 0 405 284 126 39 chr12 39104957 39105450 -105177039 - SST1 Satellite centromeric -805 758 223 944 196 7 10 chr12 39105650 39112245 -105170244 + ALR/Alpha Satellite centromeric 1 6575 -7 878 214 8 7 chr12 39112258 39112653 -105169836 + ALR/Alpha Satellite centromeric 1 394 -1227 2171 84 56 0 chr12 39112653 39112939 -105169550 + AluY SINE Alu 1 302 -9 878 214 8 7 chr12 39112939 39113873 -105168616 + ALR/Alpha Satellite centromeric 394 1617 -4 2795 30 0 0 chr12 39113874 39114205 -105168284 - L1PA3 LINE L1 0 6155 5825 1494 23 0 0 chr12 39114205 39114380 -105168109 + L1PA3 LINE L1 5640 5814 -341 1025 210 10 2 chr12 39114380 39116159 -105166330 + ALR/Alpha Satellite centromeric 1 1791 -18 872 210 0 0 chr12 39116202 39116359 -105166130 + AluJb SINE Alu 137 293 -19 1830 172 0 0 chr12 39116364 39116649 -105165840 + AluY SINE Alu 3 287 -24 21 57 0 0 chr12 39116649 39116684 -105165805 + AT_rich Low_complexity Low_complexity 1 35 0 4943 169 29 10 chr12 39116689 39117630 -105164859 - L1MC2 LINE L1 -25 6319 5361 265 354 63 19 chr12 39118154 39118312 -105164177 - MIR SINE MIR -97 165 1 261 0 0 0 chr12 39118939 39118968 -105163521 + (TC)n Simple_repeat Simple_repeat 2 30 0 225 0 0 0 chr12 39118967 39118992 -105163497 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 1901 141 29 16 chr12 39118994 39119300 -105163189 - AluSg SINE Alu 0 310 1 888 265 48 7 chr12 39119326 39119635 -105162854 - L1MA9 LINE L1 -38 6274 5953 311 156 0 0 chr12 39119662 39119707 -105162782 - Alu SINE Alu -255 46 2 1510 147 4 28 chr12 39120060 39120312 -105162177 - AluSg/x SINE Alu -2 310 65 290 208 52 21 chr12 39120356 39120452 -105162037 - L1ME3A LINE L1 -220 5950 5852 959 131 0 0 chr12 39120491 39120628 -105161861 + AluSq/x SINE Alu 1 137 -175 1938 126 3 17 chr12 39120633 39120935 -105161554 + AluSc SINE Alu 9 306 -3 * 1984 145 3 0 chr12 39120934 39121244 -105161245 + AluSx SINE Alu 1 311 -1 420 299 52 26 chr12 39121260 39121615 -105160874 - L1ME3A LINE L1 -401 5769 5421 1893 134 17 3 chr12 39121746 39122037 -105160452 - AluSq SINE Alu -10 303 9 993 195 0 0 chr12 39122172 39122341 -105160148 + AluSg/x SINE Alu 130 298 -12 1247 85 28 11 chr12 39122491 39122667 -105159822 + AluY SINE Alu 113 291 -20 1363 189 5 2 chr12 39122682 39122961 -105159528 + L1P4 LINE L1 5546 5822 -352 2177 113 3 0 chr12 39122973 39123274 -105159215 - AluSp SINE Alu -8 305 4 1871 164 0 0 chr12 39123290 39123588 -105158901 - AluSq SINE Alu -15 298 1 2097 105 0 0 chr12 39124152 39124437 -105158052 + AluY SINE Alu 1 285 -26 36 23 0 0 chr12 39124437 39124480 -105158009 + AT_rich Low_complexity Low_complexity 1 43 0 2914 173 11 60 chr12 39124480 39124739 -105157750 - MER57B-int LTR ERV1 -6998 539 322 1967 142 3 0 chr12 39124739 39125035 -105157454 + AluSx SINE Alu 6 302 -10 2914 173 11 60 chr12 39125035 39125342 -105157147 - MER57B-int LTR ERV1 -7215 322 1 2644 149 12 2 chr12 39125342 39125772 -105156717 - MER57B LTR ERV1 0 434 1 1030 108 0 19 chr12 39125772 39125929 -105156560 + MER4E LTR ERV1 613 766 0 1038 239 58 12 chr12 39125929 39126235 -105156254 + L1ME2 LINE L1 5802 6117 -45 291 290 0 0 chr12 39126763 39126825 -105155664 - LTR33 LTR ERVL -153 368 307 368 314 64 0 chr12 39127072 39127212 -105155277 - LTR16C LTR ERVL -109 382 234 656 318 132 41 chr12 39127479 39128115 -105154374 - L2 LINE L2 -68 3245 2544 184 290 87 43 chr12 39128267 39128405 -105154084 + MIR SINE MIR 65 208 -54 32 0 0 0 chr12 39129708 39129740 -105152749 + AT_rich Low_complexity Low_complexity 1 32 0 2604 246 69 16 chr12 39129740 39130533 -105151956 + L1ME1 LINE L1 5316 6150 -16 452 288 54 48 chr12 39130622 39131122 -105151367 + L1ME3A LINE L1 3345 3847 -2299 * 455 204 72 98 chr12 39131117 39131211 -105151278 + L1MC4 LINE L1 7759 7854 -188 1981 145 76 17 chr12 39131211 39131555 -105150934 - THE1B LTR MaLR 0 364 1 455 204 72 98 chr12 39131555 39131724 -105150765 + L1MC4 LINE L1 7854 8015 -27 316 340 145 35 chr12 39131761 39132161 -105150328 + L1ME3A LINE L1 3832 4275 -1871 882 265 98 15 chr12 39132182 39132662 -105149827 + L1ME3A LINE L1 4298 4817 -1329 232 309 123 0 chr12 39132668 39132830 -105149659 + L1ME3A LINE L1 4931 5112 -1034 1532 294 93 22 chr12 39132851 39133798 -105148691 + L1ME3A LINE L1 5152 6166 -4 22 0 0 0 chr12 39134767 39134789 -105147700 + AT_rich Low_complexity Low_complexity 1 22 0 399 311 179 36 chr12 39134924 39135455 -105147034 - L1 LINE L1 -3325 2821 2215 410 333 98 35 chr12 39135521 39135920 -105146569 - LTR33 LTR ERVL -67 454 31 1883 317 21 11 chr12 39136803 39137422 -105145067 - ERVL LTR ERVL -1084 4680 4056 547 346 119 11 chr12 39137476 39138072 -105144417 - ERVL LTR ERVL -2171 3593 2882 711 162 7 37 chr12 39138129 39138265 -105144224 + FLAM_C SINE Alu 1 132 -1 561 317 39 30 chr12 39138302 39138731 -105143758 - LTR33 LTR ERVL -57 464 1 5710 13 0 0 chr12 39138922 39139807 -105142682 - L1HS LINE L1 -249 5906 5022 2181 12 0 0 chr12 39139805 39140054 -105142435 + L1HS LINE L1 5905 6153 -2 * 22 35 0 0 chr12 39140469 39140498 -105141991 + AT_rich Low_complexity Low_complexity 1 29 0 509 338 101 31 chr12 39142354 39142742 -105139747 + L3 LINE CR1 1162 1576 -1 297 332 83 36 chr12 39142831 39143024 -105139465 + MIR SINE MIR 3 204 -58 180 0 0 0 chr12 39143390 39143410 -105139079 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 454 343 72 46 chr12 39143520 39144482 -105138007 + L1MEc LINE L1 22 1008 -5388 459 329 25 16 chr12 39144519 39144835 -105137654 + L1MEc LINE L1 1466 1784 -4612 11563 43 2 5 chr12 39145568 39147782 -105134707 + L1PA4 LINE L1 3928 6146 -9 234 260 29 48 chr12 39147897 39148001 -105134488 + L1ME2 LINE L1 5713 5814 -356 735 247 89 23 chr12 39148011 39148270 -105134219 + L1ME2 LINE L1 5888 6163 -1 1792 260 36 46 chr12 39148509 39149140 -105133349 + MLT1E2 LTR MaLR 1 625 -1 1257 157 143 50 chr12 39149271 39149614 -105132875 - THE1C LTR MaLR 0 375 1 400 340 153 0 chr12 39151060 39151263 -105131226 - MIR SINE MIR -4 258 25 994 207 36 44 chr12 39151508 39151759 -105130730 + MER96B DNA MER1_type? 1 249 -168 22 35 0 0 chr12 39152019 39152048 -105130441 + AT_rich Low_complexity Low_complexity 1 29 0 394 363 62 14 chr12 39152622 39152911 -105129578 + HAL1b LINE L1 631 933 -415 1676 149 53 53 chr12 39153495 39153674 -105128815 + THE1C LTR MaLR 1 179 -196 1877 154 3 10 chr12 39153674 39153966 -105128523 + AluSx SINE Alu 7 296 -16 1676 149 53 53 chr12 39153966 39154161 -105128328 + THE1C LTR MaLR 178 375 0 1496 147 4 0 chr12 39154247 39154485 -105128004 - Tigger5 DNA MER2_type 0 2323 2085 320 222 0 16 chr12 39154506 39154569 -105127920 - Tigger5 DNA MER2_type -2261 62 1 229 291 0 0 chr12 39154588 39154674 -105127815 + (CAGA)n Simple_repeat Simple_repeat 4 89 0 272 269 78 47 chr12 39154766 39154959 -105127530 + L1ME3A LINE L1 4132 4330 -1816 263 226 0 0 chr12 39155036 39155089 -105127400 - MER96B DNA MER1_type? -120 55 3 514 309 6 0 chr12 39155102 39155267 -105127222 + L1ME3A LINE L1 5401 5566 -604 230 259 0 0 chr12 39155272 39155326 -105127163 + L1ME3A LINE L1 5664 5717 -453 379 237 0 11 chr12 39155356 39155449 -105127040 + L1ME3A LINE L1 5794 5885 -285 1248 217 120 57 chr12 39155463 39155833 -105126656 - MLT1D LTR MaLR 0 505 97 1982 130 0 16 chr12 39155833 39156149 -105126340 - AluSx SINE Alu -1 311 1 1248 217 120 57 chr12 39156149 39156253 -105126236 - MLT1D LTR MaLR -408 97 1 30 83 0 0 chr12 39156474 39156546 -105125943 + AT_rich Low_complexity Low_complexity 1 72 0 24 0 0 0 chr12 39156620 39156644 -105125845 + AT_rich Low_complexity Low_complexity 1 24 0 236 128 209 47 chr12 39156785 39156871 -105125618 - L1ME4a LINE L1 -41 6080 5981 * 272 198 103 52 chr12 39156843 39156959 -105125530 + HAL1b LINE L1 1225 1346 -2 303 290 91 91 chr12 39157031 39157252 -105125237 - MIR SINE MIR -12 250 30 21 57 0 0 chr12 39158696 39158731 -105123758 + AT_rich Low_complexity Low_complexity 1 35 0 1876 49 16 8 chr12 39159031 39159276 -105123213 + AluY SINE Alu 64 310 -1 295 137 27 0 chr12 39159930 39160003 -105122486 + (TA)n Simple_repeat Simple_repeat 2 76 0 222 343 52 30 chr12 39160205 39160339 -105122150 - MIR SINE MIR -45 217 81 420 185 12 0 chr12 39160385 39160466 -105122023 + MER94 DNA DNA 4 85 -49 382 313 107 25 chr12 39160632 39160913 -105121576 - L1ME4a LINE L1 -174 5947 5644 1293 211 45 23 chr12 39161073 39161381 -105121108 - MLT1A2 LTR MaLR 0 374 60 231 278 37 0 chr12 39163242 39163296 -105119193 + L2 LINE L2 3217 3272 0 761 22 0 0 chr12 39163431 39163520 -105118969 - L1PA3 LINE L1 -4 6151 6063 521 42 0 0 chr12 39163522 39163594 -105118895 + L1PA3 LINE L1 5986 6057 -98 21 36 0 0 chr12 39164056 39164084 -105118405 + AT_rich Low_complexity Low_complexity 1 28 0 3007 154 84 24 chr12 39164841 39165611 -105116878 + MER21A LTR ERV1 1 931 0 21 57 0 0 chr12 39166252 39166287 -105116202 + AT_rich Low_complexity Low_complexity 1 35 0 1295 190 0 13 chr12 39166907 39167133 -105115356 + MER41D LTR ERV1 335 557 0 514 311 142 18 chr12 39167138 39167746 -105114743 - HAL1 LINE L1 -364 2143 1612 210 37 0 0 chr12 39167746 39167773 -105114716 + (TG)n Simple_repeat Simple_repeat 2 28 0 514 311 142 18 chr12 39167773 39168901 -105113588 - HAL1 LINE L1 -895 1612 133 1911 153 0 28 chr12 39169627 39169948 -105112541 + AluSx SINE Alu 1 312 0 1824 135 54 43 chr12 39171387 39171758 -105110731 + THE1C LTR MaLR 1 375 0 39 68 0 0 chr12 39172193 39172267 -105110222 + AT_rich Low_complexity Low_complexity 1 74 0 2113 95 3 14 chr12 39172954 39173250 -105109239 - AluY SINE Alu -18 293 1 1773 161 3 10 chr12 39173511 39173809 -105108680 + AluSx SINE Alu 1 296 -16 512 208 61 80 chr12 39174381 39174593 -105107896 - L1MC5 LINE L1 -763 7198 6991 28 61 0 0 chr12 39174624 39174673 -105107816 + AT_rich Low_complexity Low_complexity 1 49 0 516 310 63 34 chr12 39174758 39175026 -105107463 + L1MB1 LINE L1 5 280 -5611 431 340 45 54 chr12 39175170 39175553 -105106936 + L1MB1 LINE L1 186 513 -5378 619 325 13 4 chr12 39175736 39175970 -105106519 + L1MB1 LINE L1 694 929 -4962 9501 210 35 23 chr12 39175984 39178045 -105104444 + L1MB1 LINE L1 2531 4566 -1426 1653 147 0 4 chr12 39178045 39178319 -105104170 + AluSx SINE Alu 33 305 0 9501 210 35 23 chr12 39178319 39179294 -105103195 + L1MB1 LINE L1 4566 5616 -376 826 82 0 34 chr12 39179294 39179441 -105103048 + (TA)n Simple_repeat Simple_repeat 1 142 0 9501 210 35 23 chr12 39179441 39179810 -105102679 + L1MB1 LINE L1 5616 5979 -13 1023 326 74 24 chr12 39179818 39180427 -105102062 - L2 LINE L2 -90 3223 2574 1271 245 33 12 chr12 39181958 39182289 -105100200 + MLT1A1 LTR MaLR 26 363 -2 450 111 0 28 chr12 39182848 39182920 -105099569 - AluJo SINE Alu -8 304 235 301 222 28 0 chr12 39182920 39182992 -105099497 - MER52A LTR ERV1 0 1755 1682 * 3471 194 113 83 chr12 39182982 39184120 -105098369 - MER52A LTR ERV1 -559 1196 25 1257 210 0 12 chr12 39184125 39184368 -105098121 - AluJo SINE Alu -72 240 1 1309 199 51 67 chr12 39185418 39185503 -105096986 + MLT1A1 LTR MaLR 1 86 -279 2083 131 0 0 chr12 39185503 39185833 -105096656 + AluSg SINE Alu 1 330 0 1309 199 51 67 chr12 39185833 39186117 -105096372 + MLT1A1 LTR MaLR 86 365 0 228 262 85 71 chr12 39187944 39188085 -105094404 - L1ME4a LINE L1 -4 6117 5975 1452 201 0 34 chr12 39189584 39189877 -105092612 - AluJo SINE Alu -21 291 9 301 302 113 19 chr12 39190428 39190534 -105091955 - L2 LINE L2 -16 3297 3182 1946 144 14 14 chr12 39190977 39191324 -105091165 - MER7A DNA MER2_type -1 345 1 4073 93 2 7 chr12 39192326 39192904 -105089585 - L1PA8 LINE L1 -2 6170 5596 299 320 5 25 chr12 39242910 39243102 -105039387 - SST1 Satellite centromeric -1098 465 277 219 36 0 0 chr12 39243102 39243130 -105039359 + (CCCCAG)n Simple_repeat Simple_repeat 2 29 0 246 231 0 0 chr12 39243146 39243198 -105039291 - SST1 Satellite centromeric -1511 52 1 214 272 25 0 chr12 39243899 39243980 -105038509 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 * 221 180 20 0 chr12 39243937 39243987 -105038502 + GA-rich Low_complexity Low_complexity 2 52 0 396 55 0 0 chr12 39243996 39244051 -105038438 + (CA)n Simple_repeat Simple_repeat 2 56 0 2941 279 52 56 chr12 39244072 39245630 -105036859 - SST1 Satellite centromeric -11 1552 1 216 163 0 0 chr12 39246329 39246372 -105036117 + (CA)n Simple_repeat Simple_repeat 2 44 0 267 206 16 0 chr12 39246376 39246439 -105036050 + GA-rich Low_complexity Low_complexity 1 64 0 270 0 0 0 chr12 39247808 39247838 -105034651 + (TA)n Simple_repeat Simple_repeat 2 31 0 225 94 0 0 chr12 39249215 39249247 -105033242 + (GA)n Simple_repeat Simple_repeat 2 33 0 903 291 71 2 chr12 39250580 39251044 -105031445 - L1M4 LINE L1 -3404 2742 2247 26 30 0 0 chr12 39251045 39251078 -105031411 + AT_rich Low_complexity Low_complexity 1 33 0 783 182 176 6 chr12 39251247 39251417 -105031072 - AluSg/x SINE Alu -27 282 84 330 229 84 0 chr12 39251417 39251500 -105030989 + MER119 DNA MER1_type 75 164 -419 2041 132 0 28 chr12 39252170 39252489 -105030000 - AluSg SINE Alu 0 310 1 279 322 42 8 chr12 39252823 39252941 -105029548 - MER94 DNA DNA -2 132 11 1870 223 85 8 chr12 39253039 39253523 -105028966 - MER90 LTR ERV1 0 614 94 198 0 0 0 chr12 39253621 39253643 -105028846 + (T)n Simple_repeat Simple_repeat 1 22 0 547 256 126 14 chr12 39254306 39254513 -105027976 + MIR SINE MIR 30 259 -3 181 250 135 0 chr12 39254929 39254981 -105027508 - MIR SINE MIR -133 75 17 344 243 29 48 chr12 39255038 39255141 -105027348 - MIR SINE MIR -70 192 92 218 369 18 9 chr12 39255355 39255466 -105027023 + L2 LINE L2 2748 2859 -455 438 20 0 0 chr12 39255662 39255713 -105026776 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1715 148 0 24 chr12 39255735 39256026 -105026463 - AluSq SINE Alu -19 294 11 1934 118 17 10 chr12 39256140 39256437 -105026052 - AluSq SINE Alu -14 299 1 908 136 7 0 chr12 39256440 39256580 -105025909 - AluY SINE Alu -170 141 1 204 40 0 0 chr12 39257500 39257525 -105024964 + (CA)n Simple_repeat Simple_repeat 2 26 0 1250 173 120 33 chr12 39257602 39257903 -105024586 - SST1 Satellite centromeric 0 1563 1237 844 164 13 13 chr12 39257908 39258060 -105024429 + AluSg/x SINE Alu 157 308 -4 7404 149 23 17 chr12 39258150 39259534 -105022955 - SST1 Satellite centromeric -170 1393 1 1916 314 59 38 chr12 39260084 39261045 -105021444 - SST1 Satellite centromeric -324 1239 245 324 94 0 0 chr12 39261045 39261098 -105021391 + (CCCCAG)n Simple_repeat Simple_repeat 5 57 0 1916 314 59 38 chr12 39261098 39261349 -105021140 - SST1 Satellite centromeric -1318 245 1 222 200 30 50 chr12 39261509 39261609 -105020880 + GA-rich Low_complexity Low_complexity 5 102 0 247 203 17 0 chr12 39262156 39262215 -105020274 + GA-rich Low_complexity Low_complexity 1 60 0 462 18 0 0 chr12 39262216 39262271 -105020218 + (CA)n Simple_repeat Simple_repeat 2 56 0 2458 272 45 61 chr12 39262309 39263709 -105018780 - SST1 Satellite centromeric -27 1536 159 203 203 34 0 chr12 39263792 39263851 -105018638 + GA-rich Low_complexity Low_complexity 1 61 0 456 72 0 0 chr12 39263851 39263920 -105018569 + (CA)n Simple_repeat Simple_repeat 2 70 0 2188 258 75 60 chr12 39263941 39265214 -105017275 - SST1 Satellite centromeric -11 1552 255 258 56 0 0 chr12 39265214 39265250 -105017239 + (CCCCAG)n Simple_repeat Simple_repeat 3 38 0 2188 258 75 60 chr12 39265250 39265349 -105017140 - SST1 Satellite centromeric -1308 255 159 651 65 0 0 chr12 39265490 39265583 -105016906 + (CA)n Simple_repeat Simple_repeat 2 94 0 2387 250 63 56 chr12 39265604 39266889 -105015600 - SST1 Satellite centromeric -11 1552 256 267 54 0 0 chr12 39266889 39266926 -105015563 + (CCCCAG)n Simple_repeat Simple_repeat 2 38 0 2387 250 63 56 chr12 39266926 39267025 -105015464 - SST1 Satellite centromeric -1307 256 159 504 68 0 0 chr12 39267167 39267240 -105015249 + (CA)n Simple_repeat Simple_repeat 2 74 0 2499 278 57 46 chr12 39267261 39268544 -105013945 - SST1 Satellite centromeric -11 1552 247 345 75 0 0 chr12 39268544 39268597 -105013892 + (CCCCAG)n Simple_repeat Simple_repeat 5 57 0 2499 278 57 46 chr12 39268597 39268847 -105013642 - SST1 Satellite centromeric -1316 247 1 211 222 81 30 chr12 39269007 39269106 -105013383 + (CAGGG)n Simple_repeat Simple_repeat 2 105 0 222 220 17 0 chr12 39269654 39269713 -105012776 + GA-rich Low_complexity Low_complexity 2 61 0 465 62 0 0 chr12 39269713 39269778 -105012711 + (CA)n Simple_repeat Simple_repeat 2 66 0 2971 267 70 43 chr12 39269782 39271051 -105011438 - SST1 Satellite centromeric -1 1562 244 216 0 0 0 chr12 39271051 39271075 -105011414 + (CCCCAG)n Simple_repeat Simple_repeat 4 27 0 2971 267 70 43 chr12 39271075 39271326 -105011163 - SST1 Satellite centromeric -1319 244 1 215 192 27 41 chr12 39272063 39272136 -105010353 + (CAGAGA)n Simple_repeat Simple_repeat 6 77 0 2723 269 57 61 chr12 39272137 39273705 -105008784 - SST1 Satellite centromeric -1 1562 1 233 293 0 0 chr12 39274402 39274501 -105007988 + (CAGA)n Simple_repeat Simple_repeat 2 100 0 * 271 217 14 0 chr12 39274448 39274517 -105007972 + GA-rich Low_complexity Low_complexity 2 71 0 279 0 0 0 chr12 39274517 39274548 -105007941 + (CA)n Simple_repeat Simple_repeat 2 32 0 1036 204 60 107 chr12 39274752 39275135 -105007354 - MLT1A1 LTR MaLR 0 365 1 256 45 0 45 chr12 39275537 39275581 -105006908 + (GAAAA)n Simple_repeat Simple_repeat 3 44 0 743 227 245 9 chr12 39275591 39275917 -105006572 + L1MC3 LINE L1 5965 6367 -1418 2073 122 0 3 chr12 39275934 39276237 -105006252 + AluSx SINE Alu 1 302 -10 713 192 35 20 chr12 39276246 39276414 -105006075 + L1M4 LINE L1 2912 3076 -3070 2599 23 0 0 chr12 39276414 39276715 -105005774 + AluY SINE Alu 1 301 -10 713 192 35 20 chr12 39276715 39276726 -105005763 + L1M4 LINE L1 3076 3085 -3061 1919 113 0 30 chr12 39276726 39277026 -105005463 + AluSx SINE Alu 1 291 -21 713 192 35 20 chr12 39277026 39277052 -105005437 + L1M4 LINE L1 3085 3112 -3034 850 199 6 0 chr12 39277170 39277331 -105005158 - AluJo/FRAM SINE Alu -4 298 137 1251 112 11 0 chr12 39277334 39277521 -105004968 - AluSc SINE Alu -3 306 118 2557 33 0 3 chr12 39277560 39277860 -105004629 - AluY SINE Alu -12 299 1 246 32 0 0 chr12 39277876 39277907 -105004582 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 585 204 9 0 chr12 39277911 39278024 -105004465 - FLAM_C SINE Alu -19 114 1 832 248 63 54 chr12 39278164 39278649 -105003840 - L1ME LINE L1 -678 5488 4997 787 133 0 33 chr12 39278934 39279054 -105003435 - AluY SINE Alu -194 117 2 1007 136 58 10 chr12 39280076 39280282 -105002207 + MER33 DNA MER1_type 1 216 -108 1139 245 160 43 chr12 39280304 39280774 -105001715 + L1MC4 LINE L1 7278 7802 -240 883 289 92 24 chr12 39280777 39281244 -105001245 + ERVL LTR ERVL 4116 4614 -1150 338 202 0 19 chr12 39281386 39281490 -105000999 + (ATG)n Simple_repeat Simple_repeat 3 104 0 315 217 94 109 chr12 39281904 39282008 -105000481 - MIR SINE MIR -21 241 138 2477 190 16 4 chr12 39282008 39282497 -104999992 - L1MB2 LINE L1 -7 6164 5670 315 217 94 109 chr12 39282497 39282530 -104999959 - MIR SINE MIR -124 138 106 227 274 32 0 chr12 39282807 39282869 -104999620 - L2 LINE L2 -1 3312 3249 588 282 56 55 chr12 39283012 39283277 -104999212 - MIR SINE MIR -1 261 5 183 189 27 0 chr12 39283714 39283751 -104998738 + MIR SINE MIR 108 145 -63 311 238 69 20 chr12 39284217 39284318 -104998171 - L1ME3A LINE L1 -221 5949 5844 23 0 0 0 chr12 39284374 39284397 -104998092 + AT_rich Low_complexity Low_complexity 1 23 0 346 315 181 8 chr12 39284411 39284720 -104997769 - L1ME3A LINE L1 -479 5642 5322 942 128 0 0 chr12 39284858 39284999 -104997490 - AluSg/x SINE Alu -18 294 154 3841 187 54 7 chr12 39285000 39286075 -104996414 - L1MB7 LINE L1 -69 6115 4997 663 281 126 29 chr12 39286234 39286972 -104995517 - L1MEd LINE L1 -4576 1734 896 271 321 36 58 chr12 39287090 39287227 -104995262 + MIR SINE MIR 110 243 -19 2036 120 7 0 chr12 39287493 39287801 -104994688 + AluY SINE Alu 1 310 -1 504 261 52 33 chr12 39288420 39288573 -104993916 - MIR SINE MIR -99 163 8 681 236 94 43 chr12 39288576 39288809 -104993680 + MIR SINE MIR 17 261 -1 444 226 0 0 chr12 39289684 39289808 -104992681 + (TCCA)n Simple_repeat Simple_repeat 3 126 0 191 288 225 0 chr12 39290005 39290085 -104992404 - MIR SINE MIR -64 144 47 313 314 118 13 chr12 39290241 39290412 -104992077 + MIR SINE MIR 26 204 -58 328 203 0 0 chr12 39290511 39290570 -104991919 - MIR SINE MIR -89 119 61 321 242 52 92 chr12 39290578 39290731 -104991758 + MIR3 SINE MIR 35 181 -27 186 305 264 19 chr12 39292005 39292323 -104990166 - L2 LINE L2 -340 2974 2579 369 229 0 0 chr12 39292992 39293097 -104989392 + (ATG)n Simple_repeat Simple_repeat 3 107 0 566 210 0 11 chr12 39293123 39293304 -104989185 + (ATG)n Simple_repeat Simple_repeat 2 180 0 307 256 18 85 chr12 39293510 39293642 -104988847 - L1ME LINE L1 -544 5620 5481 2386 106 11 44 chr12 39293642 39294009 -104988480 + THE1A LTR MaLR 1 355 0 10886 124 7 1 chr12 39294009 39295579 -104986910 + THE1A-int LTR MaLR 1 1580 0 2110 143 14 22 chr12 39295579 39295937 -104986552 + THE1A LTR MaLR 1 355 0 307 256 18 85 chr12 39295937 39295966 -104986523 - L1ME LINE L1 -680 5484 5468 22 0 0 0 chr12 39296108 39296130 -104986359 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr12 39297042 39297067 -104985422 + AT_rich Low_complexity Low_complexity 1 25 0 39 38 0 0 chr12 39297735 39297788 -104984701 + AT_rich Low_complexity Low_complexity 1 53 0 227 297 29 80 chr12 39299052 39299227 -104983262 + MLT1E2 LTR MaLR 8 173 -453 623 150 52 146 chr12 39301159 39301426 -104981063 - L1MA9 LINE L1 -1 6311 6070 1408 196 39 4 chr12 39301443 39301723 -104980766 - AluJo SINE Alu -11 301 12 1887 207 49 30 chr12 39301734 39302890 -104979599 - L1MA9 LINE L1 -527 5785 4560 2087 104 0 36 chr12 39302890 39303199 -104979290 - AluSx SINE Alu -12 300 3 1887 207 49 30 chr12 39303199 39303511 -104978978 - L1MA9 LINE L1 -1752 4560 4255 243 0 0 0 chr12 39303902 39303929 -104978560 + (TG)n Simple_repeat Simple_repeat 2 28 0 1024 282 52 36 chr12 39304348 39305146 -104977343 + L1M4 LINE L1 3396 4266 -1880 1271 186 49 85 chr12 39305146 39305534 -104976955 - LTR47B LTR ERVL -69 374 1 2108 349 58 15 chr12 39305728 39306873 -104975616 - PABL_B-int LTR ERV1 -321 6801 5607 511 356 33 22 chr12 39307512 39307865 -104974624 - HERVL18 LTR ERVL -1249 4206 3762 255 382 0 6 chr12 39308545 39308702 -104973787 - HERVL18 LTR ERVL -2295 3048 2893 250 386 15 10 chr12 39309097 39309294 -104973195 - HERVL18 LTR ERVL -4326 1721 1524 198 277 0 84 chr12 39310968 39311051 -104971438 + MIR SINE MIR 117 192 -70 189 333 0 42 chr12 39312355 39312427 -104970062 + MIR3 SINE MIR 102 170 -38 1190 168 47 33 chr12 39313697 39313971 -104968518 + L1MB3 LINE L1 5904 6181 -2 411 275 8 8 chr12 39313980 39314111 -104968378 + L1ME3A LINE L1 5821 5951 -219 634 277 146 29 chr12 39314303 39314783 -104967706 + L1ME LINE L1 511 1046 -5024 303 258 55 115 chr12 39314784 39314966 -104967523 + HAL1 LINE L1 1236 1406 -1101 3116 230 51 92 chr12 39315381 39316199 -104966290 - LTR1 LTR ERV1 0 785 1 207 300 0 0 chr12 39316737 39316797 -104965692 + G-rich Low_complexity Low_complexity 1 60 0 464 214 11 0 chr12 39317769 39317858 -104964631 + MER33 DNA MER1_type 9 98 -226 309 51 0 0 chr12 39317879 39317918 -104964571 + (TG)n Simple_repeat Simple_repeat 2 40 0 626 193 104 83 chr12 39318491 39318683 -104963806 - MLT1A1 LTR MaLR -169 196 1 827 261 113 43 chr12 39319098 39319380 -104963109 - L1ME LINE L1 -393 5771 5510 2443 108 3 43 chr12 39319380 39319750 -104962739 + THE1A LTR MaLR 1 355 0 11092 120 2 1 chr12 39319750 39321328 -104961161 + THE1A-int LTR MaLR 1 1580 0 2182 139 11 22 chr12 39321328 39321687 -104960802 + THE1A LTR MaLR 1 355 0 827 261 113 43 chr12 39321687 39321971 -104960518 - L1ME LINE L1 -654 5510 5247 1409 147 105 18 chr12 39321971 39322257 -104960232 - AluSx SINE Alu -1 311 1 827 261 113 43 chr12 39322257 39322742 -104959747 - L1ME LINE L1 -917 5247 4647 198 0 0 0 chr12 39322748 39322770 -104959719 + (GA)n Simple_repeat Simple_repeat 2 23 0 1346 189 0 42 chr12 39322770 39323056 -104959433 - AluJo SINE Alu -38 274 1 21 36 0 0 chr12 39323821 39323849 -104958640 + AT_rich Low_complexity Low_complexity 1 28 0 2011 142 0 0 chr12 39324025 39324328 -104958161 - AluSq SINE Alu -10 303 1 327 287 30 10 chr12 39324381 39324482 -104958007 - HAL1b LINE L1 -10 1338 1236 1752 147 3 3 chr12 39324574 39324860 -104957629 - AluSq SINE Alu -25 288 3 184 120 260 0 chr12 39324981 39325031 -104957458 + MIR3 SINE MIR 129 191 -17 806 189 0 0 chr12 39325083 39325215 -104957274 - FLAM_C SINE Alu -1 132 1 1353 204 32 3 chr12 39325670 39325793 -104956696 + AluJb SINE Alu 1 119 -193 294 29 0 0 chr12 39325793 39325828 -104956661 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1353 204 32 3 chr12 39325828 39325989 -104956500 + AluJb SINE Alu 119 293 -19 322 122 354 37 chr12 39325992 39326074 -104956415 + Tigger1 DNA MER2_type 1066 1173 -1245 587 117 0 10 chr12 39326074 39326177 -104956312 + L1P LINE L1 3856 3957 -2189 740 269 72 15 chr12 39326350 39326684 -104955805 - L1M4 LINE L1 -1147 4999 4647 1094 74 0 9 chr12 39326695 39326926 -104955563 + (TA)n Simple_repeat Simple_repeat 1 228 0 1410 192 0 34 chr12 39326936 39327228 -104955261 - AluJo SINE Alu -30 282 1 2047 110 0 0 chr12 39328194 39328496 -104953993 - AluSq SINE Alu 0 302 1 310 301 18 26 chr12 39328536 39328649 -104953840 - HAL1b LINE L1 -1 1347 1236 1773 164 0 3 chr12 39328741 39329028 -104953461 - AluSq SINE Alu -25 288 3 210 136 212 30 chr12 39329149 39329215 -104953274 + MIR3 SINE MIR 129 206 -2 728 199 0 8 chr12 39329259 39329390 -104953099 - FLAM_C SINE Alu -3 130 1 1527 177 3 36 chr12 39329849 39330154 -104952335 + AluJb SINE Alu 1 295 -17 582 111 248 26 chr12 39330156 39330273 -104952216 + Tigger1 DNA MER2_type 1066 1208 -1210 * 5219 141 0 45 chr12 39330261 39330501 -104951988 + Tigger1 DNA MER2_type 1545 1794 -624 1975 128 3 0 chr12 39330501 39330789 -104951700 - AluSp SINE Alu -24 289 1 5219 141 0 45 chr12 39330789 39331324 -104951165 + Tigger1 DNA MER2_type 1794 2275 -143 1692 136 66 0 chr12 39331324 39331596 -104950893 - AluSx SINE Alu -21 291 2 5219 141 0 45 chr12 39331596 39331734 -104950755 + Tigger1 DNA MER2_type 2275 2418 0 391 277 17 8 chr12 39331734 39331852 -104950637 - LTR16C LTR ERVL -14 477 359 903 292 117 29 chr12 39332220 39332707 -104949782 + MER115 DNA AcHobo 15 643 -50 1647 136 3 17 chr12 39333113 39333400 -104949089 - L1MA4 LINE L1 0 6300 6018 420 218 73 150 chr12 39333685 39333919 -104948570 - MIR SINE MIR 0 262 47 1819 122 0 42 chr12 39334027 39334338 -104948151 + AluSx SINE Alu 7 305 0 314 320 50 0 chr12 39334432 39334532 -104947957 - L2 LINE L2 -15 3298 3194 454 325 62 21 chr12 39335086 39335280 -104947209 - MIR SINE MIR -12 250 49 2194 60 4 0 chr12 39335291 39335572 -104946917 + L1PA3 LINE L1 5874 6155 0 311 283 41 14 chr12 39336019 39336164 -104946325 + L1M4 LINE L1 3717 3865 -2281 581 111 0 11 chr12 39336260 39336350 -104946139 - L1PA16 LINE L1 -9 6157 6069 681 193 9 0 chr12 39336588 39336702 -104945787 + FLAM_A SINE Alu 1 115 -18 1755 144 3 0 chr12 39337122 39337464 -104945025 - AluSq SINE Alu 0 343 1 2012 114 3 0 chr12 39337466 39337756 -104944733 - AluSx SINE Alu -21 291 1 1108 128 0 6 chr12 39337759 39337938 -104944551 - AluSq SINE Alu -5 308 131 23 0 0 0 chr12 39337940 39337963 -104944526 + AT_rich Low_complexity Low_complexity 1 23 0 497 148 0 0 chr12 39338182 39338263 -104944226 + AluY SINE Alu 217 297 -14 1810 158 3 0 chr12 39338554 39338857 -104943632 + AluSx SINE Alu 1 304 -8 389 136 0 12 chr12 39339128 39339145 -104943344 + (GAAA)n Simple_repeat Simple_repeat 3 19 -63 1957 155 7 0 chr12 39339145 39339455 -104943034 + AluSx SINE Alu 1 312 0 389 136 0 12 chr12 39339455 39339518 -104942971 + (GAAA)n Simple_repeat Simple_repeat 19 82 0 1651 179 10 13 chr12 39340323 39340630 -104941859 - AluJb SINE Alu -6 306 1 1956 113 10 14 chr12 39340698 39341010 -104941479 + AluSp SINE Alu 1 311 0 1802 168 0 26 chr12 39341085 39341395 -104941094 + AluJb SINE Alu 1 302 -10 2005 128 0 0 chr12 39341395 39341691 -104940798 + AluSc SINE Alu 1 296 -13 1601 150 30 4 chr12 39341691 39341958 -104940531 - MER54A LTR ERVL -627 274 1 1518 143 140 0 chr12 39342135 39342400 -104940089 - AluSx SINE Alu 0 302 1 2003 127 3 0 chr12 39343000 39343299 -104939190 - AluSp SINE Alu -13 300 1 875 198 5 27 chr12 39343304 39343491 -104938998 - AluSg/x SINE Alu -17 293 111 1222 160 0 0 chr12 39343594 39343813 -104938676 + AluSg/x SINE Alu 94 312 0 2000 139 3 0 chr12 39343813 39344122 -104938367 + AluSp SINE Alu 1 310 -3 718 224 12 48 chr12 39344125 39344290 -104938199 + AluJo/FRAM SINE Alu 137 295 -7 711 192 0 0 chr12 39344501 39344621 -104937868 + FLAM_C SINE Alu 2 121 -22 717 19 29 10 chr12 39344621 39344724 -104937765 + (TAAAA)n Simple_repeat Simple_repeat 2 106 0 369 157 0 57 chr12 39344747 39344817 -104937672 + AluJ/FRAM SINE Alu 225 290 -12 1247 193 4 0 chr12 39345277 39345521 -104936968 + AluJb SINE Alu 1 245 -67 1761 140 7 7 chr12 39345521 39345822 -104936667 + AluSx SINE Alu 34 334 0 1181 212 26 29 chr12 39345838 39346145 -104936344 + AluJo SINE Alu 6 311 -1 3779 188 64 28 chr12 39346201 39346934 -104935555 - MER21B LTR ERV1 -1 862 94 2175 89 16 32 chr12 39346934 39347249 -104935240 + AluSx SINE Alu 3 312 0 3779 188 64 28 chr12 39347249 39347347 -104935142 - MER21B LTR ERV1 -769 94 1 1832 162 20 45 chr12 39347648 39348044 -104934445 - LTR25 LTR ERV1 -47 747 362 695 158 9 0 chr12 39348044 39348158 -104934331 + LTR46 LTR ERV1 1 115 -345 604 299 53 10 chr12 39348285 39348492 -104933997 - MIR SINE MIR -15 247 32 183 189 27 0 chr12 39348968 39349005 -104933484 + MIR SINE MIR 108 145 -63 370 299 19 0 chr12 39350049 39350156 -104932333 - L2 LINE L2 -18 3254 3146 2122 130 0 0 chr12 39350850 39351157 -104931332 - AluSg SINE Alu -3 307 1 290 297 42 8 chr12 39351493 39351611 -104930878 - MER94 DNA DNA -2 132 11 1826 224 82 10 chr12 39351709 39352195 -104930294 - MER90 LTR ERV1 0 614 94 554 241 133 20 chr12 39352966 39353169 -104929320 + MIR SINE MIR 30 255 -7 187 238 143 0 chr12 39353599 39353641 -104928848 - MIR SINE MIR -144 64 17 383 214 48 68 chr12 39353698 39353801 -104928688 - MIR SINE MIR -70 192 92 312 70 0 0 chr12 39354322 39354365 -104928124 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1703 136 0 25 chr12 39354392 39354678 -104927811 - AluSq SINE Alu -24 289 11 1914 108 20 10 chr12 39354792 39355089 -104927400 - AluSq SINE Alu -13 300 1 877 128 14 0 chr12 39355090 39355231 -104927258 - AluY SINE Alu -168 143 1 1312 169 120 33 chr12 39356251 39356552 -104925937 - SST1 Satellite centromeric 0 1563 1237 808 161 13 7 chr12 39356557 39356712 -104925777 + AluSg/x SINE Alu 157 312 0 7530 153 20 26 chr12 39356804 39358206 -104924283 - SST1 Satellite centromeric -170 1393 1 2190 270 63 44 chr12 39358900 39359717 -104922772 - SST1 Satellite centromeric -474 1089 246 243 61 0 0 chr12 39359717 39359750 -104922739 + (CCCCAG)n Simple_repeat Simple_repeat 1 33 0 2190 270 63 44 chr12 39359750 39360001 -104922488 - SST1 Satellite centromeric -1317 246 1 363 98 0 0 chr12 39360793 39360854 -104921635 + (CA)n Simple_repeat Simple_repeat 2 62 0 2224 272 45 51 chr12 39360875 39362121 -104920368 - SST1 Satellite centromeric -11 1552 315 16016 89 8 17 chr12 39362268 39365818 -104916671 - L1P LINE L1 -1546 4600 1072 826 241 229 4 chr12 39365921 39366187 -104916302 - MER93a LTR ERV1 -73 329 4 2459 182 43 63 chr12 39366661 39367150 -104915339 + L1MB4 LINE L1 5099 5596 -584 1453 166 0 0 chr12 39367150 39367379 -104915110 + AluSg SINE Alu 1 229 -81 2459 182 43 63 chr12 39367379 39367402 -104915087 + L1MB4 LINE L1 5596 5618 -562 312 27 0 0 chr12 39367402 39367439 -104915050 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2459 182 43 63 chr12 39367439 39367665 -104914824 + L1MB4 LINE L1 5618 5831 -349 22 35 0 0 chr12 39367739 39367768 -104914721 + AT_rich Low_complexity Low_complexity 1 29 0 8087 112 5 18 chr12 39368760 39370048 -104912441 + L1PA8 LINE L1 4047 5343 -829 2092 108 7 17 chr12 39370048 39370345 -104912144 + AluSq SINE Alu 1 294 -19 8087 112 5 18 chr12 39370345 39371165 -104911324 + L1PA8 LINE L1 5343 6172 0 2002 150 11 11 chr12 39372162 39372509 -104909980 + MER7A DNA MER2_type 1 345 -1 235 331 7 47 chr12 39372881 39373029 -104909460 + L2 LINE L2 3117 3258 -55 1383 219 0 34 chr12 39373588 39373885 -104908604 + AluJo SINE Alu 3 289 -23 27 29 0 0 chr12 39374160 39374194 -104908295 + AT_rich Low_complexity Low_complexity 1 34 0 21 82 0 0 chr12 39374398 39374447 -104908042 + AT_rich Low_complexity Low_complexity 1 49 0 1366 197 51 67 chr12 39377356 39377640 -104904849 - MLT1A1 LTR MaLR 0 365 86 2140 118 0 0 chr12 39377640 39377970 -104904519 - AluSg SINE Alu 0 330 1 1366 197 51 67 chr12 39377970 39378055 -104904434 - MLT1A1 LTR MaLR -279 86 1 1229 204 0 17 chr12 39379107 39379347 -104903142 + AluJo SINE Alu 1 236 -76 3503 199 111 81 chr12 39379356 39380494 -104901995 + MER52A LTR ERV1 25 1196 -559 300 250 28 0 chr12 39380484 39380556 -104901933 + MER52A LTR ERV1 1682 1755 0 * 408 121 0 30 chr12 39380556 39380622 -104901867 + AluJo SINE Alu 235 298 -14 1178 245 49 12 chr12 39381185 39381511 -104900978 - MLT1A1 LTR MaLR -2 363 26 1080 334 66 19 chr12 39383047 39383654 -104898835 + L2 LINE L2 2574 3223 -90 1636 216 22 0 chr12 39383662 39384028 -104898461 - L1MB1 LINE L1 -13 5979 5606 403 117 10 39 chr12 39384028 39384131 -104898358 + (TA)n Simple_repeat Simple_repeat 1 100 0 9023 206 51 27 chr12 39384131 39385121 -104897368 - L1MB1 LINE L1 -375 5617 4652 1877 128 0 4 chr12 39385121 39385395 -104897094 - AluSx SINE Alu -7 305 33 9023 206 51 27 chr12 39385395 39387418 -104895071 - L1MB1 LINE L1 -1340 4652 2531 645 316 12 8 chr12 39387433 39387677 -104894812 - L1MB1 LINE L1 -4991 910 666 422 352 37 68 chr12 39387847 39388232 -104894257 - L1MB1 LINE L1 -5278 613 203 546 324 55 42 chr12 39388332 39388644 -104893845 - L1MB1 LINE L1 -5571 320 5 35 41 0 0 chr12 39388729 39388778 -104893711 + AT_rich Low_complexity Low_complexity 1 49 0 535 222 61 51 chr12 39388809 39389074 -104893415 + L1MC5 LINE L1 6991 7250 -733 1908 147 0 10 chr12 39389598 39389897 -104892592 - AluSx SINE Alu -16 296 1 2148 85 3 33 chr12 39390158 39390465 -104892024 + AluY SINE Alu 1 298 -13 1850 132 51 43 chr12 39391643 39392015 -104890474 - THE1C LTR MaLR 0 375 1 242 239 61 117 chr12 39393153 39393316 -104889173 + MER20B DNA MER1_type 20 173 -610 1915 142 0 30 chr12 39393468 39393803 -104888686 - AluSx SINE Alu 0 326 1 832 314 144 15 chr12 39394530 39395651 -104886838 + HAL1 LINE L1 133 1108 -1399 372 22 0 0 chr12 39395651 39395696 -104886793 + (CA)n Simple_repeat Simple_repeat 2 46 0 832 314 144 15 chr12 39395696 39396304 -104886185 + HAL1 LINE L1 1108 2143 -364 1261 199 0 13 chr12 39396309 39396535 -104885954 - MER41D LTR ERV1 0 557 335 21 57 0 0 chr12 39397153 39397188 -104885301 + AT_rich Low_complexity Low_complexity 1 35 0 2908 161 91 24 chr12 39397829 39398593 -104883896 - MER21A LTR ERV1 0 931 1 536 28 0 0 chr12 39399843 39399915 -104882574 - L1PA3 LINE L1 -98 6057 5986 725 12 0 0 chr12 39399917 39400022 -104882467 + L1PA3 LINE L1 6063 6167 0 225 278 37 0 chr12 39400145 39400199 -104882290 - L2 LINE L2 0 3313 3258 192 97 0 0 chr12 39400679 39400710 -104881779 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1267 211 45 23 chr12 39402074 39402382 -104880107 + MLT1A2 LTR MaLR 60 374 0 409 321 108 11 chr12 39402542 39402819 -104879670 + L1ME4a LINE L1 5644 5947 -174 421 185 12 0 chr12 39402985 39403066 -104879423 - MER94 DNA DNA -49 85 4 378 0 0 0 chr12 39403436 39403478 -104879011 + (TA)n Simple_repeat Simple_repeat 2 43 0 25 31 0 0 chr12 39403495 39403527 -104878962 + AT_rich Low_complexity Low_complexity 1 32 0 1862 61 16 4 chr12 39404172 39404417 -104878072 - AluY SINE Alu 0 311 64 291 290 95 95 chr12 39406175 39406396 -104876093 + MIR SINE MIR 30 250 -12 278 190 103 52 chr12 39406468 39406584 -104875905 - HAL1b LINE L1 -2 1346 1225 255 125 182 45 chr12 39406556 39406644 -104875845 + L1ME4a LINE L1 5981 6080 -41 * 306 224 65 37 chr12 39406739 39406846 -104875643 - HAL1b LINE L1 -145 1203 1094 22 0 0 0 chr12 39406879 39406901 -104875588 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr12 39406918 39406950 -104875539 + AT_rich Low_complexity Low_complexity 1 32 0 1258 224 123 35 chr12 39407172 39407276 -104875213 + MLT1D LTR MaLR 1 94 -411 2120 114 0 16 chr12 39407276 39407593 -104874896 + AluSx SINE Alu 1 312 0 1258 224 123 35 chr12 39407593 39407952 -104874537 + MLT1D LTR MaLR 94 505 0 394 212 0 12 chr12 39407974 39408059 -104874430 - L1ME3A LINE L1 -293 5877 5794 230 259 0 0 chr12 39408089 39408143 -104874346 - L1ME3A LINE L1 -453 5717 5664 564 297 6 0 chr12 39408148 39408313 -104874176 - L1ME3A LINE L1 -604 5566 5401 292 294 0 0 chr12 39408324 39408392 -104874097 + MER96B DNA MER1_type? 1 68 -107 312 266 75 45 chr12 39408450 39408649 -104873840 - L1ME3A LINE L1 -1810 4336 4132 220 259 0 0 chr12 39408742 39408796 -104873693 + CT-rich Low_complexity Low_complexity 1 54 0 213 94 0 0 chr12 39408797 39408829 -104873660 + (TG)n Simple_repeat Simple_repeat 2 33 0 343 204 45 34 chr12 39408848 39408936 -104873553 + Tigger5 DNA MER2_type 1 89 -2234 * 1474 147 4 0 chr12 39408932 39409170 -104873319 + Tigger5 DNA MER2_type 2085 2323 0 1561 153 65 57 chr12 39409254 39409449 -104873040 - THE1C LTR MaLR 0 375 174 1854 149 14 7 chr12 39409449 39409737 -104872752 - AluSx SINE Alu -16 296 7 1561 153 65 57 chr12 39409737 39409913 -104872576 - THE1C LTR MaLR -201 174 1 22 35 0 0 chr12 39411365 39411394 -104871095 + AT_rich Low_complexity Low_complexity 1 29 0 1111 200 20 43 chr12 39411654 39411909 -104870580 - MER96B DNA MER1_type? -168 249 1 383 340 160 0 chr12 39412154 39412348 -104870141 + MIR SINE MIR 25 249 -13 1250 166 125 35 chr12 39413914 39414258 -104868231 + THE1C LTR MaLR 1 375 0 1866 254 40 49 chr12 39414389 39415020 -104867469 - MLT1E2 LTR MaLR -1 625 1 729 229 98 29 chr12 39415260 39415635 -104866854 - L1ME2 LINE L1 -1 6163 5710 11806 45 6 4 chr12 39415753 39417951 -104864538 - L1PA5 LINE L1 -20 6134 3928 462 313 29 19 chr12 39418678 39418994 -104863495 - L1MEc LINE L1 -4612 1784 1466 437 328 89 53 chr12 39419035 39419980 -104862509 - L1MEc LINE L1 -5382 1014 36 225 0 0 0 chr12 39420104 39420129 -104862360 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 299 337 53 37 chr12 39420501 39420691 -104861798 - MIR SINE MIR -67 195 3 515 335 100 25 chr12 39420780 39421180 -104861309 - L3 LINE CR1 -1 1576 1147 22 35 0 0 chr12 39423025 39423054 -104859435 + AT_rich Low_complexity Low_complexity 1 29 0 614 301 39 27 chr12 39423640 39424068 -104858421 + LTR33 LTR ERVL 1 464 -57 818 134 7 35 chr12 39424094 39424236 -104858253 - FLAM_C SINE Alu 0 143 6 470 334 43 11 chr12 39424298 39424894 -104857595 + ERVL LTR ERVL 2882 3593 -2171 1819 327 25 12 chr12 39424928 39425677 -104856812 + ERVL LTR ERVL 3995 4763 -891 436 322 101 35 chr12 39426450 39426848 -104855641 + LTR33 LTR ERVL 31 454 -67 365 268 85 64 chr12 39426914 39427149 -104855340 + L1M4 LINE L1 2215 2454 -3692 305 382 0 0 chr12 39427314 39427445 -104855044 + L1M4 LINE L1 2691 2821 -3325 21 36 0 0 chr12 39427485 39427513 -104854976 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 39427578 39427600 -104854889 + AT_rich Low_complexity Low_complexity 1 22 0 1474 299 90 18 chr12 39428565 39429446 -104853043 - L1ME3A LINE L1 -4 6166 5225 853 296 94 16 chr12 39429706 39430454 -104852035 - L1ME3A LINE L1 -1329 4817 4012 386 212 64 91 chr12 39430642 39430811 -104851678 - L1MC4 LINE L1 -27 8015 7854 2054 137 76 17 chr12 39430811 39431155 -104851334 + THE1B LTR MaLR 1 364 0 386 212 64 91 chr12 39431155 39431249 -104851240 - L1MC4 LINE L1 -188 7854 7759 300 298 48 52 chr12 39431244 39431765 -104850724 - L1ME3A LINE L1 -2299 3847 3329 * 231 254 0 0 chr12 39431774 39431833 -104850656 - L1ME1 LINE L1 -7 6159 6101 2476 241 83 19 chr12 39431833 39432627 -104849862 - L1ME1 LINE L1 -6 6160 5316 25 31 0 0 chr12 39432627 39432659 -104849830 + AT_rich Low_complexity Low_complexity 1 32 0 215 268 87 47 chr12 39433958 39434085 -104848404 - MIR SINE MIR -54 208 77 704 335 122 17 chr12 39434248 39434744 -104847745 + L2 LINE L2 2544 3107 -206 422 293 64 0 chr12 39435136 39435276 -104847213 + LTR16C LTR ERVL 234 382 -109 336 317 101 25 chr12 39435523 39435722 -104846767 + LTR33 LTR ERVL 307 520 -1 234 0 0 0 chr12 39436094 39436120 -104846369 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 1120 238 22 12 chr12 39436126 39436442 -104846047 - L1ME2 LINE L1 -45 6117 5802 1061 102 0 19 chr12 39436442 39436599 -104845890 - MER4E LTR ERV1 0 766 613 2677 140 14 2 chr12 39436599 39437028 -104845461 + MER57B LTR ERV1 1 434 0 2937 168 11 58 chr12 39437028 39437335 -104845154 + MER57B-int LTR ERV1 1 270 -7267 2014 145 0 0 chr12 39437335 39437632 -104844857 - AluSx SINE Alu -12 300 4 2937 168 11 58 chr12 39437632 39437890 -104844599 + MER57B-int LTR ERV1 270 539 -6998 30 27 0 0 chr12 39437890 39437927 -104844562 + AT_rich Low_complexity Low_complexity 1 37 0 2039 126 0 0 chr12 39437927 39438212 -104844277 - AluY SINE Alu -26 285 1 2064 141 0 0 chr12 39438808 39439106 -104843383 + AluSq SINE Alu 1 298 -15 2060 111 4 0 chr12 39439122 39439424 -104843065 + AluSp SINE Alu 4 306 0 183 80 0 0 chr12 39439444 39439469 -104843020 + (TG)n Simple_repeat Simple_repeat 2 26 0 232 133 0 80 chr12 39439471 39439546 -104842943 + LTR66 LTR ERVL 394 462 -148 1086 184 5 0 chr12 39439557 39439753 -104842736 - L1M2 LINE L1 -549 5742 5546 1376 87 5 11 chr12 39439767 39439951 -104842538 - AluY SINE Alu -16 295 113 1110 168 0 6 chr12 39440117 39440296 -104842193 - AluSg/x SINE Alu -13 299 122 2121 127 7 3 chr12 39440409 39440717 -104841772 + AluSq SINE Alu 1 309 -4 401 315 108 30 chr12 39440848 39441206 -104841283 + L1ME3A LINE L1 5421 5750 -420 1848 161 3 0 chr12 39441206 39441510 -104840979 - AluSx SINE Alu -7 305 1 2019 125 3 35 chr12 39441510 39441678 -104840811 - AluSx SINE Alu -11 301 146 1983 122 24 0 chr12 39441678 39441965 -104840524 - AluY SINE Alu -9 302 9 2019 125 3 35 chr12 39441965 39442107 -104840382 - AluSx SINE Alu -166 146 1 401 315 108 30 chr12 39442107 39442239 -104840250 + L1ME3A LINE L1 5749 5950 -220 1663 115 4 28 chr12 39442283 39442535 -104839954 + AluSg/x SINE Alu 65 310 -2 316 109 0 22 chr12 39442890 39442936 -104839553 + Alu SINE Alu 2 46 -257 742 257 74 19 chr12 39442955 39443278 -104839211 + L1MA9 LINE L1 5934 6274 -38 1714 155 35 18 chr12 39443304 39443588 -104838901 + AluSg SINE Alu 1 289 -21 315 0 0 0 chr12 39443607 39443642 -104838847 + (GA)n Simple_repeat Simple_repeat 2 36 0 277 342 71 19 chr12 39444280 39444435 -104838054 + MIR SINE MIR 12 174 -88 4709 178 30 12 chr12 39444955 39445919 -104836570 + L1MC2 LINE L1 5361 6341 -3 1995 149 0 0 chr12 39445933 39446222 -104836267 - AluY SINE Alu -20 291 3 930 204 0 0 chr12 39446227 39446384 -104836105 - AluJb SINE Alu -19 293 137 978 206 9 6 chr12 39446427 39449142 -104833347 - ALR/Alpha Satellite centromeric 0 3412 708 221 0 35 0 chr12 39449142 39449171 -104833318 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1982 95 61 0 chr12 39449171 39449434 -104833055 - AluY SINE Alu -32 279 1 978 206 9 6 chr12 39449434 39449828 -104832661 - ALR/Alpha Satellite centromeric -2703 709 1 918 196 11 6 chr12 39449841 39451975 -104830514 - ALR/Alpha Satellite centromeric -4 2143 1 207 0 0 0 chr12 39451981 39452004 -104830485 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 952 200 7 12 chr12 39452005 39456442 -104826047 - ALR/Alpha Satellite centromeric 0 4415 1 546 284 78 55 chr12 39456609 39457081 -104825408 + SST1 Satellite centromeric 190 672 -891 328 284 65 19 chr12 39457321 39457476 -104825013 + SST1 Satellite centromeric 1391 1552 -11 219 88 0 0 chr12 39457522 39457556 -104824933 + (TG)n Simple_repeat Simple_repeat 1 34 0 604 314 60 52 chr12 39458559 39459187 -104823302 + SST1 Satellite centromeric 40 672 -891 408 303 59 64 chr12 39459594 39460003 -104822486 + SST1 Satellite centromeric 1130 1536 -27 353 165 10 0 chr12 39460008 39460105 -104822384 + (TG)n Simple_repeat Simple_repeat 1 98 0 1024 199 8 6 chr12 39460749 39464624 -104817865 - ALR/Alpha Satellite centromeric -8 3880 1 3062 271 60 46 chr12 39464915 39465171 -104817318 + SST1 Satellite centromeric 1 252 -1311 279 93 0 0 chr12 39465171 39465214 -104817275 + (CTGGGG)n Simple_repeat Simple_repeat 3 45 0 3062 271 60 46 chr12 39465214 39466498 -104815991 + SST1 Satellite centromeric 252 1562 -1 225 0 0 0 chr12 39466502 39466527 -104815962 + (TG)n Simple_repeat Simple_repeat 2 26 0 249 210 16 0 chr12 39466527 39466589 -104815900 + CT-rich Low_complexity Low_complexity 1 63 0 577 257 58 18 chr12 39467318 39467544 -104814945 + SST1 Satellite centromeric 1 235 -1328 2134 265 60 52 chr12 39467556 39468688 -104813801 + SST1 Satellite centromeric 416 1556 -7 249 33 0 0 chr12 39468703 39468733 -104813756 + (TG)n Simple_repeat Simple_repeat 2 31 0 245 196 18 0 chr12 39468733 39468789 -104813700 + CT-rich Low_complexity Low_complexity 1 57 0 262 78 20 20 chr12 39468793 39468844 -104813645 + (TG)n Simple_repeat Simple_repeat 2 52 0 536 272 75 24 chr12 39469549 39469762 -104812727 + SST1 Satellite centromeric 9 232 -1331 1470 289 58 50 chr12 39469773 39470593 -104811896 + SST1 Satellite centromeric 413 1239 -324 7524 157 29 19 chr12 39471157 39472550 -104809939 + SST1 Satellite centromeric 1 1406 -157 813 154 0 13 chr12 39472623 39472772 -104809717 - AluSg/x SINE Alu -9 303 157 1261 191 127 11 chr12 39472778 39473061 -104809428 + SST1 Satellite centromeric 1238 1553 -10 803 164 7 0 chr12 39474128 39474268 -104808221 + AluYb8 SINE Alu 1 141 -177 2071 122 10 3 chr12 39474271 39474582 -104807907 + AluSq SINE Alu 1 313 0 1899 149 0 0 chr12 39474710 39474998 -104807491 + AluSx SINE Alu 11 298 -14 428 204 0 39 chr12 39475339 39475442 -104807047 + MER33 DNA MER1_type 37 135 -189 869 143 13 26 chr12 39475442 39475576 -104806913 + AluJo SINE Alu 1 134 -178 1801 142 0 52 chr12 39475576 39475885 -104806604 + AluJb SINE Alu 1 293 -19 869 143 13 26 chr12 39475885 39475904 -104806585 + AluJo SINE Alu 134 152 -160 1247 164 9 0 chr12 39475905 39476124 -104806365 + AluSg/x SINE Alu 79 299 -13 369 0 0 0 chr12 39476125 39476166 -104806323 + (CA)n Simple_repeat Simple_repeat 2 42 0 1435 186 59 10 chr12 39476254 39476561 -104805928 + L1MB8 LINE L1 5848 6169 -9 550 128 21 0 chr12 39476645 39476739 -104805750 - AluSx SINE Alu 0 312 217 822 162 7 7 chr12 39476739 39476881 -104805608 - AluSx SINE Alu -170 142 1 1138 208 4 38 chr12 39477008 39477272 -104805217 + AluJb SINE Alu 1 255 -57 582 144 0 29 chr12 39479220 39479354 -104803135 + AluSg/x SINE Alu 206 312 0 1715 132 32 7 chr12 39479459 39479740 -104802749 + AluSx SINE Alu 5 292 -20 657 170 38 0 chr12 39479769 39479875 -104802614 - AluSq/x SINE Alu -201 111 2 258 187 98 49 chr12 39480004 39480127 -104802362 - HAL1b LINE L1 -5 1343 1215 1624 179 10 17 chr12 39480183 39480459 -104802030 + AluSx SINE Alu 4 112 -200 198 0 0 0 chr12 39480459 39480481 -104802008 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1624 179 10 17 chr12 39480481 39480681 -104801808 + AluSx SINE Alu 112 312 0 1384 194 61 4 chr12 39480681 39480959 -104801530 + MER44D DNA MER2_type 439 604 -1 239 244 39 0 chr12 39481239 39481317 -104801172 + (TA)n Simple_repeat Simple_repeat 2 82 0 1752 165 3 0 chr12 39481331 39481628 -104800861 - AluSx SINE Alu -14 298 1 1625 179 3 0 chr12 39481665 39481950 -104800539 + AluJb SINE Alu 5 290 -22 236 289 24 0 chr12 39481991 39482074 -104800415 - L1ME LINE L1 -545 5576 5492 2657 196 101 4 chr12 39482076 39482602 -104799887 + MER77 LTR ERV1 1 577 -28 2265 87 0 7 chr12 39482849 39483158 -104799331 - AluY SINE Alu -4 307 1 2070 123 0 0 chr12 39483306 39483606 -104798883 - AluSg SINE Alu -1 309 10 2399 141 21 14 chr12 39483686 39484104 -104798385 - L1PA15 LINE L1 0 6165 5745 2056 231 12 19 chr12 39484114 39484550 -104797939 + L1P LINE L1 4730 5163 -983 1737 119 19 0 chr12 39484550 39484811 -104797678 + AluSg SINE Alu 42 307 -3 2056 231 12 19 chr12 39484811 39484937 -104797552 + L1P LINE L1 5163 5288 -858 267 224 0 40 chr12 39484941 39485017 -104797472 + MER89 LTR ERV1 487 559 0 1740 155 7 7 chr12 39485072 39485356 -104797133 + AluSg SINE Alu 3 286 -24 1988 130 0 3 chr12 39485364 39485663 -104796826 + AluSg SINE Alu 1 298 -12 1196 106 5 88 chr12 39485665 39485908 -104796581 + AluSp SINE Alu 98 313 0 1679 142 64 0 chr12 39486246 39486527 -104795962 + AluSq SINE Alu 1 299 -14 1042 201 20 111 chr12 39486527 39486745 -104795744 - L1MC4a LINE L1 -916 6892 6752 712 157 0 57 chr12 39486745 39486885 -104795604 + FLAM_C SINE Alu 1 132 -1 1042 201 20 111 chr12 39486885 39487027 -104795462 - L1MC4a LINE L1 -1056 6752 6599 1889 157 0 0 chr12 39487044 39487343 -104795146 - AluSx SINE Alu -13 299 1 1722 185 145 46 chr12 39487343 39487445 -104795044 + MER106B DNA MER1_type 2 92 -967 2052 130 0 0 chr12 39487445 39487745 -104794744 - AluSx SINE Alu -12 300 1 1722 185 145 46 chr12 39487745 39487842 -104794647 + MER106B DNA MER1_type 92 178 -881 1768 158 7 7 chr12 39487842 39488146 -104794343 + AluSx SINE Alu 1 304 -8 1722 185 145 46 chr12 39488146 39488427 -104794062 + MER106B DNA MER1_type 178 531 -528 1754 151 3 3 chr12 39488427 39488749 -104793740 - AluSx SINE Alu 0 322 1 1834 154 3 0 chr12 39488974 39489279 -104793210 + AluSx SINE Alu 2 307 -5 2168 113 3 0 chr12 39489332 39489642 -104792847 + AluSx SINE Alu 1 311 -1 287 105 0 0 chr12 39490025 39490063 -104792426 + Alu SINE Alu 1 38 -263 468 290 132 48 chr12 39490115 39490470 -104792019 + L2 LINE L2 2847 3231 -82 1260 87 17 0 chr12 39490472 39490644 -104791845 - AluSg/x SINE Alu -22 288 114 454 150 23 120 chr12 39491284 39491417 -104791072 + MER61E LTR ERV1 33 152 -417 * 672 168 48 8 chr12 39491401 39491514 -104790975 + LTR25 LTR ERV1 239 356 -438 845 155 216 28 chr12 39491514 39491838 -104790651 - LTR46 LTR ERV1 0 460 1 1832 162 20 45 chr12 39491838 39492234 -104790255 + LTR25 LTR ERV1 362 747 -47 3808 181 78 32 chr12 39492535 39492625 -104789864 + MER21B LTR ERV1 1 85 -778 2175 89 16 32 chr12 39492625 39492940 -104789549 - AluSx SINE Alu 0 312 3 3808 181 78 32 chr12 39492940 39493673 -104788816 + MER21B LTR ERV1 85 862 -1 1181 212 26 29 chr12 39493729 39494036 -104788453 - AluJo SINE Alu -1 311 6 1743 143 7 7 chr12 39494052 39494353 -104788136 - AluSx SINE Alu 0 334 34 248 211 0 0 chr12 39494353 39494405 -104788084 - AluJb SINE Alu -57 245 194 516 198 0 0 chr12 39494590 39494686 -104787803 - AluSx SINE Alu 0 312 217 836 169 0 0 chr12 39494686 39494828 -104787661 - AluSx SINE Alu -171 142 1 1507 185 7 7 chr12 39494953 39495245 -104787244 + AluJb SINE Alu 1 292 -20 324 0 0 0 chr12 39495584 39495620 -104786869 + (CA)n Simple_repeat Simple_repeat 1 36 0 189 0 0 0 chr12 39496100 39496121 -104786368 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 378 0 0 0 chr12 39497205 39497247 -104785242 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1758 144 7 0 chr12 39497248 39497526 -104784963 - AluSx SINE Alu -32 280 1 1631 179 11 0 chr12 39497616 39497895 -104784594 - AluSx SINE Alu -28 284 3 290 271 66 8 chr12 39498030 39498152 -104784337 - HAL1b LINE L1 -5 1343 1215 1663 173 3 22 chr12 39498205 39498523 -104783966 + AluSx SINE Alu 1 312 0 429 66 66 0 chr12 39498530 39498606 -104783883 + GA-rich Low_complexity Low_complexity 1 81 0 1633 184 13 22 chr12 39498607 39498922 -104783567 + MER44D DNA MER2_type 421 604 -1 1854 144 7 0 chr12 39499289 39499587 -104782902 - AluSx SINE Alu -12 300 1 1492 207 7 0 chr12 39499620 39499919 -104782570 + AluJb SINE Alu 1 301 -11 2427 211 113 4 chr12 39500031 39500551 -104781938 + MER77 LTR ERV1 1 577 -28 1822 149 0 0 chr12 39500928 39501210 -104781279 - AluSg SINE Alu 0 310 29 769 147 0 37 chr12 39501260 39501434 -104781055 + AluSp/q SINE Alu 172 313 0 1949 104 3 45 chr12 39501573 39501881 -104780608 - AluSx SINE Alu -17 295 1 1028 115 0 0 chr12 39501881 39502020 -104780469 - AluSq/x SINE Alu -172 141 3 532 236 42 21 chr12 39502041 39502185 -104780304 + L2 LINE L2 3167 3313 0 882 212 14 37 chr12 39502242 39502459 -104780030 - AluSx SINE Alu -100 212 1 23 0 0 0 chr12 39502713 39502736 -104779753 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr12 39502915 39502955 -104779534 + AT_rich Low_complexity Low_complexity 1 40 0 1219 222 60 4 chr12 39502955 39503260 -104779229 - L1MC/D LINE L1 -718 5626 5370 936 172 0 0 chr12 39503265 39503422 -104779067 + FRAM SINE Alu 1 157 -19 1934 128 0 0 chr12 39503425 39503745 -104778744 + AluY SINE Alu 1 320 0 3249 181 57 10 chr12 39503752 39504425 -104778064 - L1MC2 LINE L1 -25 6319 5616 235 180 197 0 chr12 39504686 39504747 -104777742 - AluSq SINE Alu -8 295 223 1242 137 6 0 chr12 39504748 39504930 -104777559 - AluSq SINE Alu -130 183 1 1433 133 4 29 chr12 39505289 39505529 -104776960 - AluSg/x SINE Alu -14 298 65 264 226 54 21 chr12 39505576 39505669 -104776820 - L1ME3A LINE L1 -223 5947 5852 1672 155 16 39 chr12 39505709 39505850 -104776639 + AluSx SINE Alu 1 144 -168 1708 161 7 0 chr12 39505850 39506136 -104776353 + AluY SINE Alu 8 295 -16 1672 155 16 39 chr12 39506136 39506303 -104776186 + AluSx SINE Alu 144 302 -10 1752 157 0 0 chr12 39506307 39506593 -104775896 + AluSx SINE Alu 3 288 -24 59 0 0 0 chr12 39506593 39506652 -104775837 + AT_rich Low_complexity Low_complexity 1 59 0 462 319 63 12 chr12 39506670 39507002 -104775487 - L1ME3A LINE L1 -401 5769 5421 2006 119 7 3 chr12 39507148 39507441 -104775048 - AluSq SINE Alu -15 298 5 1602 159 10 10 chr12 39508284 39508573 -104773916 - AluJb SINE Alu -23 289 1 589 152 0 11 chr12 39508686 39508778 -104773711 + AluSp SINE Alu 122 212 -101 1588 198 23 8 chr12 39509283 39509623 -104772866 + MER93a LTR ERV1 4 394 -8 754 187 0 43 chr12 39509625 39509764 -104772725 - FLAM_A SINE Alu 0 133 1 612 89 0 11 chr12 39510002 39510092 -104772397 + L1PA16 LINE L1 6069 6157 -9 317 280 24 8 chr12 39510188 39510313 -104772176 - L1M4 LINE L1 -2281 3865 3739 24 32 0 0 chr12 39510334 39510365 -104772124 + AT_rich Low_complexity Low_complexity 1 31 0 457 335 56 19 chr12 39510748 39510963 -104771526 + MIR SINE MIR 28 250 -12 345 297 50 0 chr12 39511512 39511613 -104770876 + L2 LINE L2 3193 3298 -15 1805 157 0 7 chr12 39511709 39512002 -104770487 - AluSx SINE Alu -15 297 7 414 230 132 113 chr12 39512108 39512312 -104770177 + MIR SINE MIR 44 251 -11 1648 125 14 7 chr12 39512635 39512916 -104769573 + L1MA4 LINE L1 6018 6300 0 1120 269 90 34 chr12 39513098 39513657 -104768832 - MER115 DNA AcHobo -50 643 15 419 281 15 15 chr12 39514004 39514139 -104768350 + LTR16C LTR ERVL 340 474 -17 2878 158 2 41 chr12 39514142 39514280 -104768209 - Tigger1 DNA MER2_type 0 2418 2276 1858 121 39 0 chr12 39514280 39514560 -104767929 + AluSx SINE Alu 2 292 -20 2878 158 2 41 chr12 39514560 39514969 -104767520 - Tigger1 DNA MER2_type -142 2276 1899 846 255 25 10 chr12 39515153 39515349 -104767140 - MER115 DNA AcHobo -50 643 445 2101 134 7 0 chr12 39515406 39515712 -104766777 + AluSp SINE Alu 1 308 -5 2269 139 0 0 chr12 39515712 39516064 -104766425 - Tigger1 DNA MER2_type -645 1773 1422 300 250 107 0 chr12 39518944 39519028 -104763461 + L1ME LINE L1 5737 5829 -333 209 262 24 60 chr12 39519339 39519423 -104763066 - MIR SINE MIR -58 150 70 276 286 174 0 chr12 39519619 39519717 -104762772 + L2 LINE L2 3122 3236 -36 367 283 145 0 chr12 39519728 39519873 -104762616 - L2 LINE L2 -9 3304 3139 607 282 42 8 chr12 39519957 39520198 -104762291 - L2 LINE L2 -1742 1572 1324 393 268 16 16 chr12 39520256 39520379 -104762110 + MIR SINE MIR 93 215 -47 968 310 141 2 chr12 39520395 39521020 -104761469 - L2 LINE L2 -1993 1321 610 2104 188 25 109 chr12 39521082 39521694 -104760795 - MER7C DNA MER2_type -42 560 1 356 278 164 27 chr12 39521697 39521960 -104760529 - L2 LINE L2 -2793 521 223 506 115 0 0 chr12 39522392 39522470 -104760019 - AluSc SINE Alu -11 298 221 453 270 8 8 chr12 39522954 39523080 -104759409 - L2 LINE L2 -55 3258 3133 721 180 8 0 chr12 39523080 39523208 -104759281 + FLAM_C SINE Alu 5 133 -10 248 294 124 79 chr12 39523384 39523561 -104758928 + MER5A DNA MER1_type 3 187 -2 334 273 27 18 chr12 39523637 39523747 -104758742 + L2 LINE L2 2927 3037 -235 285 246 31 19 chr12 39524113 39524232 -104758257 + MIR SINE MIR 33 152 -65 25 31 0 0 chr12 39525329 39525361 -104757128 + AT_rich Low_complexity Low_complexity 1 32 0 628 304 119 14 chr12 39575513 39576160 -104706329 + L1ME4a LINE L1 5269 6037 -84 555 284 43 26 chr12 39576199 39576431 -104706058 - MER106A DNA MER1_type 0 236 1 1120 147 6 0 chr12 39576493 39576656 -104705833 - AluSg/x SINE Alu -30 280 117 1217 147 7 1 chr12 39576792 39578186 -104704303 + ALR/Alpha Satellite centromeric 1 1401 -29 6731 45 29 0 chr12 39578186 39579388 -104703101 - L1PA3 LINE L1 0 6155 4935 10539 62 8 11 chr12 39579392 39580823 -104701666 - L1PA3 LINE L1 -1445 4701 3274 1302 149 4 2 chr12 39580925 39586164 -104696325 + ALR/Alpha Satellite centromeric 1 5253 -46 1089 168 3 2 chr12 39586266 39588419 -104694070 - ALR/Alpha Satellite centromeric 0 2153 1 1219 99 5 42 chr12 39588420 39588611 -104693878 + LTR5 LTR ERVK 1 184 -785 2683 125 3 0 chr12 39588621 39589013 -104693476 + LTR5 LTR ERVK 577 969 0 982 158 16 2 chr12 39589013 39589511 -104692978 - ALR/Alpha Satellite centromeric 0 504 1 1074 180 2 3 chr12 39589523 39591749 -104690740 - ALR/Alpha Satellite centromeric 0 2225 1 1143 173 5 4 chr12 39591761 39594823 -104687666 + ALR/Alpha Satellite centromeric 1 3063 -8 2245 83 0 0 chr12 39594926 39595204 -104687285 - AluY SINE Alu -29 282 5 1064 167 1 0 chr12 39595208 39595832 -104686657 + ALR/Alpha Satellite centromeric 1 624 -13 1201 153 3 2 chr12 39595844 39610611 -104671878 + ALR/Alpha Satellite centromeric 1 14786 0 1213 150 5 2 chr12 39610622 39624327 -104658162 + ALR/Alpha Satellite centromeric 1 13733 -20 1279 143 3 1 chr12 39624435 39647707 -104634782 + ALR/Alpha Satellite centromeric 1 23317 -27 40603 68 3 2 chr12 39647708 39653853 -104628636 - L1PA3 LINE L1 -3 6152 2 1176 159 4 0 chr12 39653853 39657628 -104624861 + ALR/Alpha Satellite centromeric 1 3786 -14 1185 155 5 2 chr12 39657642 39668715 -104613774 - ALR/Alpha Satellite centromeric 0 11107 1 37602 64 38 3 chr12 39668715 39673679 -104608810 + L1P LINE L1 1 5141 -1005 1191 164 4 1 chr12 39673785 39680779 -104601710 + ALR/Alpha Satellite centromeric 1 7013 0 1181 159 3 1 chr12 39680884 39690182 -104592307 - ALR/Alpha Satellite centromeric 0 9316 1 39564 63 37 2 chr12 39690182 39695400 -104587089 + L1P LINE L1 1 5397 -749 1279 151 2 2 chr12 39695515 39703075 -104579414 + ALR/Alpha Satellite centromeric 1 7687 -4849 985 56 0 0 chr12 39703075 39703200 -104579289 - L1PA3 LINE L1 -5 6150 6026 1279 151 2 2 chr12 39703200 39707986 -104574503 + ALR/Alpha Satellite centromeric 7687 12471 -65 15767 85 1 4 chr12 39707987 39710102 -104572387 + L1P LINE L1 1 2108 -4038 1255 162 3 2 chr12 39710206 39719629 -104562860 + ALR/Alpha Satellite centromeric 1 9415 -12270 2390 88 0 0 chr12 39719629 39719934 -104562555 - AluY SINE Alu -2 309 5 1255 162 3 2 chr12 39719934 39731864 -104550625 + ALR/Alpha Satellite centromeric 9415 21674 -11 1167 163 5 3 chr12 39731879 39745329 -104537160 + ALR/Alpha Satellite centromeric 1 13480 -48 1144 168 5 4 chr12 39745358 39749476 -104533013 + ALR/Alpha Satellite centromeric 1 4114 -4528 2706 23 7 0 chr12 39749476 39749785 -104532704 - AluYb8 SINE Alu -7 311 1 1144 168 5 4 chr12 39749785 39753982 -104528507 + ALR/Alpha Satellite centromeric 4114 8631 -11 1182 154 4 2 chr12 39753997 39762966 -104519523 + ALR/Alpha Satellite centromeric 1 8983 0 967 171 4 3 chr12 39762977 39764590 -104517899 + ALR/Alpha Satellite centromeric 1 1615 0 1201 169 4 2 chr12 39764700 39770613 -104511876 + ALR/Alpha Satellite centromeric 1 5927 -53 2451 58 3 3 chr12 39770754 39771079 -104511410 + L1PA3 LINE L1 3870 4194 -1952 7953 53 1 2 chr12 39771081 39772848 -104509641 + L1PA3 LINE L1 4386 6152 -3 1185 153 3 1 chr12 39772856 39781832 -104500657 - ALR/Alpha Satellite centromeric 0 8991 1 1702 189 0 29 chr12 39782009 39782315 -104500174 + AluJb SINE Alu 1 297 -15 2019 124 35 0 chr12 39782324 39782614 -104499875 + AluSc SINE Alu 1 300 -9 1485 152 45 8 chr12 39782614 39782878 -104499611 - MER54A LTR ERVL -627 274 1 1535 132 143 0 chr12 39783062 39783320 -104499169 - AluSx SINE Alu -7 295 1 2265 110 3 0 chr12 39783921 39784221 -104498268 - AluSp SINE Alu -12 301 1 825 196 7 0 chr12 39784235 39784383 -104498106 - AluSg/x SINE Alu -19 291 143 898 149 95 0 chr12 39784486 39784654 -104497835 + AluSg/x SINE Alu 127 310 0 2184 125 3 0 chr12 39784654 39784965 -104497524 + AluSq SINE Alu 1 312 -1 950 180 0 45 chr12 39784969 39785147 -104497342 + AluSg/x SINE Alu 129 298 -14 707 188 0 0 chr12 39785356 39785473 -104497016 + FLAM_C SINE Alu 1 117 -16 619 52 10 10 chr12 39785476 39785573 -104496916 + (TAAAA)n Simple_repeat Simple_repeat 2 98 0 435 157 0 0 chr12 39785597 39785667 -104496822 + AluJ/FRAM SINE Alu 223 292 -20 1354 193 4 0 chr12 39786117 39786361 -104496128 + AluJb SINE Alu 1 245 -67 1851 129 7 11 chr12 39786361 39786672 -104495817 + AluSq SINE Alu 34 313 0 1408 188 20 24 chr12 39786681 39786974 -104495515 + AluJo SINE Alu 6 297 -15 3912 170 79 32 chr12 39787042 39787778 -104494711 - MER21B LTR ERV1 0 863 82 2175 103 16 32 chr12 39787778 39788089 -104494400 + AluSx SINE Alu 3 308 -4 3912 170 79 32 chr12 39788089 39788176 -104494313 - MER21B LTR ERV1 -781 82 1 1755 156 20 48 chr12 39788484 39788881 -104493608 - LTR25 LTR ERV1 -47 747 362 745 168 81 32 chr12 39788881 39789210 -104493279 + LTR46 LTR ERV1 1 460 0 498 181 57 9 chr12 39789212 39789317 -104493172 - LTR25 LTR ERV1 -455 339 230 393 179 15 119 chr12 39789292 39789426 -104493063 - MER61E LTR ERV1 -417 152 33 * 1414 77 17 0 chr12 39790088 39790269 -104492220 + AluSg/x SINE Alu 114 297 -15 505 299 130 42 chr12 39790272 39790626 -104491863 - L2 LINE L2 -82 3231 2847 278 132 0 0 chr12 39790678 39790716 -104491773 - Alu SINE Alu -263 38 1 2286 107 10 0 chr12 39791091 39791400 -104491089 - AluSx SINE Alu 0 312 1 1815 170 3 0 chr12 39791450 39791750 -104490739 - AluSx SINE Alu -7 305 5 1279 138 3 1 chr12 39791878 39800509 -104481980 - ALR/Alpha Satellite centromeric 0 8643 1 400 322 93 58 chr12 39800987 39801933 -104480556 + L1MEc LINE L1 36 1014 -5382 522 312 27 15 chr12 39801960 39802290 -104480199 + L1MEc LINE L1 1451 1784 -4612 11808 43 2 11 chr12 39803023 39805240 -104477249 + L1PA5 LINE L1 3928 6134 -20 306 232 10 32 chr12 39805349 39805462 -104477027 + L1ME2 LINE L1 5701 5808 -356 697 225 92 38 chr12 39805479 39805741 -104476748 + L1ME2 LINE L1 5888 6163 -1 1937 241 43 51 chr12 39805981 39806611 -104475878 + MLT1E2 LTR MaLR 1 625 -1 1393 156 135 32 chr12 39806742 39807082 -104475407 - THE1C LTR MaLR 0 375 1 405 340 153 0 chr12 39808633 39808836 -104473653 - MIR SINE MIR -4 258 25 1006 220 20 43 chr12 39809081 39809336 -104473153 + MER96B DNA MER1_type? 1 249 -168 400 341 76 31 chr12 39810198 39810488 -104472001 + HAL1b LINE L1 631 933 -415 1709 154 48 50 chr12 39811075 39811256 -104471233 + THE1C LTR MaLR 1 181 -194 1841 150 7 24 chr12 39811256 39811550 -104470939 + AluSx SINE Alu 7 295 -17 1709 154 48 50 chr12 39811550 39811744 -104470745 + THE1C LTR MaLR 181 375 0 1635 155 140 3 chr12 39811830 39812152 -104470337 - MER47A DNA MER2_type 0 366 1 204 97 0 0 chr12 39812171 39812202 -104470287 + (CA)n Simple_repeat Simple_repeat 2 32 0 234 241 0 0 chr12 39812202 39812256 -104470233 + GA-rich Low_complexity Low_complexity 1 54 0 274 266 80 50 chr12 39812349 39812548 -104469941 + L1ME3A LINE L1 4132 4336 -1810 333 265 0 0 chr12 39812606 39812674 -104469815 - MER96B DNA MER1_type? -107 68 1 455 321 6 0 chr12 39812685 39812850 -104469639 + L1ME3A LINE L1 5401 5566 -604 240 259 0 0 chr12 39812855 39812909 -104469580 + L1ME3A LINE L1 5664 5717 -453 387 214 0 11 chr12 39812942 39813031 -104469458 + L1ME3A LINE L1 5797 5884 -286 1242 223 130 37 chr12 39813046 39813403 -104469086 - MLT1D LTR MaLR 0 505 94 2187 107 0 16 chr12 39813403 39813720 -104468769 - AluSx SINE Alu 0 312 1 1242 223 130 37 chr12 39813720 39813824 -104468665 - MLT1D LTR MaLR -411 94 1 22 94 0 0 chr12 39814011 39814075 -104468414 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr12 39814096 39814117 -104468372 + AT_rich Low_complexity Low_complexity 1 21 0 315 216 36 45 chr12 39814150 39814261 -104468228 + HAL1b LINE L1 1094 1203 -145 231 148 182 45 chr12 39814356 39814444 -104468045 - L1ME4a LINE L1 -41 6080 5981 * 279 186 106 53 chr12 39814419 39814532 -104467957 + HAL1b LINE L1 1228 1346 -2 272 294 95 95 chr12 39814604 39814825 -104467664 - MIR SINE MIR -12 250 30 1811 61 17 4 chr12 39816575 39816805 -104465684 + AluY SINE Alu 65 297 -14 202 182 36 0 chr12 39817458 39817513 -104464976 + (TA)n Simple_repeat Simple_repeat 1 57 0 405 198 12 0 chr12 39817890 39817971 -104464518 + MER94 DNA DNA 4 85 -49 415 314 93 11 chr12 39818139 39818419 -104464070 - L1ME4a LINE L1 -175 5946 5644 1254 218 45 23 chr12 39818579 39818887 -104463602 - MLT1A2 LTR MaLR 0 374 60 24 32 0 0 chr12 39820721 39820752 -104461737 + AT_rich Low_complexity Low_complexity 1 31 0 2970 158 84 24 chr12 39821510 39822280 -104460209 + MER21A LTR ERV1 1 931 0 21 57 0 0 chr12 39822922 39822957 -104459532 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr12 39823197 39823226 -104459263 + AT_rich Low_complexity Low_complexity 1 29 0 1301 196 13 4 chr12 39823589 39823824 -104458665 + MER41D LTR ERV1 320 556 -1 882 277 174 22 chr12 39823830 39824331 -104458158 - HAL1 LINE L1 -364 2143 1567 1310 323 131 16 chr12 39824365 39824434 -104458055 - HAL1 LINE L1 -1037 1470 1410 369 0 0 0 chr12 39824434 39824475 -104458014 + (TG)n Simple_repeat Simple_repeat 2 42 0 1310 323 131 16 chr12 39824475 39825608 -104456881 - HAL1 LINE L1 -1097 1410 129 1754 160 3 31 chr12 39826331 39826653 -104455836 + AluSx SINE Alu 1 314 0 1874 129 48 40 chr12 39828123 39828495 -104453994 + THE1C LTR MaLR 1 375 0 2039 99 3 26 chr12 39829664 39829967 -104452522 - AluY SINE Alu -15 296 1 2024 141 0 3 chr12 39830228 39830533 -104451956 + AluSx SINE Alu 1 304 -8 569 247 39 56 chr12 39831109 39831340 -104451149 - L1MC5 LINE L1 -763 7198 6972 507 336 55 42 chr12 39831487 39831799 -104450690 + L1M3 LINE L1 5 320 -5571 378 350 35 65 chr12 39831900 39832285 -104450204 + L1M3 LINE L1 203 613 -5278 664 317 8 8 chr12 39832457 39832700 -104449789 + L1M3 LINE L1 668 910 -4991 9340 207 40 31 chr12 39832715 39834784 -104447705 + L1M3 LINE L1 2531 4639 -1353 1670 144 0 4 chr12 39834784 39835215 -104447274 + AluSx SINE Alu 40 312 0 9340 207 40 31 chr12 39835215 39836197 -104446292 + L1M3 LINE L1 4639 5610 -382 303 259 47 0 chr12 39836202 39836287 -104446202 + L1MC4 LINE L1 6615 6703 -1339 281 148 49 37 chr12 39836288 39836369 -104446120 + (TATG)n Simple_repeat Simple_repeat 1 82 0 518 351 98 13 chr12 39836941 39837320 -104445169 - L3 LINE CR1 -17 1560 1150 21 0 0 0 chr12 39837597 39837618 -104444871 + AT_rich Low_complexity Low_complexity 1 21 0 610 321 38 19 chr12 39839790 39840202 -104442287 + LTR33 LTR ERVL 14 464 -57 778 127 15 37 chr12 39840240 39840374 -104442115 - FLAM_C SINE Alu -2 131 1 335 333 56 14 chr12 39840431 39840790 -104441699 + ERVL LTR ERVL 2882 3271 -2383 335 345 25 15 chr12 39840827 39841027 -104441462 + ERVL LTR ERVL 3352 3553 -2101 1836 331 22 10 chr12 39841063 39841810 -104440679 + ERVL LTR ERVL 3999 4763 -891 390 328 71 35 chr12 39842583 39842894 -104439595 + LTR33 LTR ERVL 31 352 -169 326 272 91 56 chr12 39843047 39843279 -104439210 + L1M3d LINE L1 2039 2278 -3692 24 32 0 0 chr12 39843615 39843646 -104438843 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr12 39843709 39843731 -104438758 + AT_rich Low_complexity Low_complexity 1 22 0 334 338 66 81 chr12 39844174 39844582 -104437907 - L1MC4 LINE L1 -294 7748 7347 1520 296 104 20 chr12 39844709 39845839 -104436650 - L1ME3A LINE L1 -9 6161 4931 809 275 94 13 chr12 39845845 39846321 -104436168 - L1ME3A LINE L1 -1329 4817 4303 308 319 125 41 chr12 39846426 39846746 -104435743 - L1ME3A LINE L1 -1968 4178 3832 448 236 60 76 chr12 39846783 39846952 -104435537 - L1MC4 LINE L1 -27 8015 7850 1796 166 76 17 chr12 39846952 39847296 -104435193 + THE1B LTR MaLR 1 364 0 448 236 60 76 chr12 39847296 39847376 -104435113 - L1MC4 LINE L1 -192 7850 7770 365 294 56 50 chr12 39847388 39847888 -104434601 - L1ME3A LINE L1 -2299 3847 3345 279 250 38 0 chr12 39847913 39847993 -104434496 - L1ME1 LINE L1 -7 6159 6077 * 1093 249 84 14 chr12 39847972 39848764 -104433725 - L1ME1 LINE L1 -6 6160 5319 25 31 0 0 chr12 39848764 39848796 -104433693 + AT_rich Low_complexity Low_complexity 1 32 0 232 222 103 56 chr12 39850092 39850218 -104432271 - MIR SINE MIR -54 208 77 711 326 122 19 chr12 39850381 39850878 -104431611 + L2 LINE L2 2544 3107 -206 332 322 101 25 chr12 39851657 39851856 -104430633 + LTR33 LTR ERVL 307 520 -1 1110 251 14 11 chr12 39852276 39852563 -104429926 - L1ME2 LINE L1 -75 6089 5802 1065 102 0 19 chr12 39852563 39852720 -104429769 - MER4E LTR ERV1 0 766 613 2625 149 12 2 chr12 39852720 39853150 -104429339 + MER57B LTR ERV1 1 434 0 3043 162 11 60 chr12 39853150 39853457 -104429032 + MER57B-int LTR ERV1 1 269 -7268 2102 131 0 0 chr12 39853457 39853762 -104428727 - AluSx SINE Alu -2 310 6 3043 162 11 60 chr12 39853762 39854021 -104428468 + MER57B-int LTR ERV1 269 539 -6998 29 47 0 0 chr12 39854021 39854064 -104428425 + AT_rich Low_complexity Low_complexity 1 43 0 2067 112 0 0 chr12 39854064 39854349 -104428140 - AluY SINE Alu -26 285 1 2004 144 0 0 chr12 39854913 39855212 -104427277 + AluSq SINE Alu 1 299 -14 2061 109 4 0 chr12 39855231 39855534 -104426955 + AluSp SINE Alu 7 310 0 1187 172 15 37 chr12 39855538 39855552 -104426937 - L1M2 LINE L1 -484 5807 5794 321 26 0 0 chr12 39855552 39855590 -104426899 + (TG)n Simple_repeat Simple_repeat 1 38 0 1187 172 15 37 chr12 39855590 39855843 -104426646 - L1M2 LINE L1 -497 5794 5546 1302 98 6 11 chr12 39855858 39856041 -104426448 - AluYa5 SINE Alu -17 294 113 1038 159 0 0 chr12 39856199 39856356 -104426133 - AluSg/x SINE Alu -14 298 142 1989 151 6 3 chr12 39856490 39856801 -104425688 + AluSq SINE Alu 1 312 -1 450 303 119 33 chr12 39856934 39857279 -104425210 + L1ME3 LINE L1 5423 5737 -425 1847 157 3 3 chr12 39857279 39857584 -104424905 - AluSx SINE Alu -7 305 1 2042 121 3 38 chr12 39857584 39857758 -104424731 - AluSx SINE Alu -6 306 146 1797 151 11 0 chr12 39857758 39858042 -104424447 - AluY SINE Alu -16 295 9 2042 121 3 38 chr12 39858042 39858181 -104424308 - AluSx SINE Alu -166 146 4 450 303 119 33 chr12 39858181 39858320 -104424169 + L1ME3 LINE L1 5736 5950 -212 1629 127 4 28 chr12 39858364 39858617 -104423872 + AluSg/x SINE Alu 65 311 -1 831 272 62 6 chr12 39859036 39859359 -104423130 + L1MA9 LINE L1 5934 6274 -38 1667 144 36 18 chr12 39859385 39859663 -104422826 + AluSg SINE Alu 1 283 -27 1077 172 4 3 chr12 39859778 39864171 -104418318 + ALR/Alpha Satellite centromeric 1 4396 -8 6451 125 4 3 chr12 39864171 39865139 -104417350 - LTR5 LTR ERVK 0 969 1 1227 171 4 2 chr12 39865151 39882655 -104399834 + ALR/Alpha Satellite centromeric 1 17533 -48 1047 173 4 3 chr12 39882684 39887782 -104394707 + ALR/Alpha Satellite centromeric 1 5100 -65 35760 68 3 5 chr12 39887783 39892493 -104389996 + L1PA3 LINE L1 1 4701 -1445 7208 33 22 1 chr12 39892497 39893697 -104388792 + L1PA3 LINE L1 4935 6152 -3 1083 171 5 2 chr12 39893697 39901569 -104380920 + ALR/Alpha Satellite centromeric 1 7895 -8 1066 182 3 2 chr12 39901580 39903290 -104379199 + ALR/Alpha Satellite centromeric 1 1712 0 372 22 0 0 chr12 39903296 39903341 -104379148 + (TTA)n Simple_repeat Simple_repeat 1 45 0 7281 38 7 0 chr12 39903344 39904677 -104377812 - L1PA3 LINE L1 -20 6135 4797 5069 47 0 0 chr12 39904677 39905315 -104377174 + L1PA3 LINE L1 4142 4779 -1367 1059 167 8 5 chr12 39905315 39911030 -104371459 + ALR/Alpha Satellite centromeric 1 6052 -1646 2883 13 0 0 chr12 39911030 39911345 -104371144 - AluYb8 SINE Alu -3 315 1 1059 167 8 5 chr12 39911345 39912990 -104369499 + ALR/Alpha Satellite centromeric 6052 7692 -6 41587 58 6 5 chr12 39912994 39919138 -104363351 + L1PA4 LINE L1 1 6152 -3 974 170 7 1 chr12 39919140 39920827 -104361662 + ALR/Alpha Satellite centromeric 1 1696 -32 1069 172 4 2 chr12 39920870 39932024 -104350465 - ALR/Alpha Satellite centromeric 0 11176 1 221 197 33 0 chr12 39932198 39932259 -104350230 + GA-rich Low_complexity Low_complexity 1 63 0 282 87 0 0 chr12 39932259 39932305 -104350184 + (CA)n Simple_repeat Simple_repeat 2 47 0 1433 235 73 60 chr12 39932312 39933197 -104349292 - SST1 Satellite centromeric -1 1562 666 424 119 0 30 chr12 39933799 39933866 -104348623 - Alu SINE Alu -13 299 235 2581 185 142 56 chr12 39933866 39935075 -104347414 - MER52C LTR ERV1 0 1278 1 1969 143 0 3 chr12 39935555 39935842 -104346647 + AluSq SINE Alu 3 288 -25 2187 126 0 0 chr12 39936090 39936392 -104346097 + AluSq SINE Alu 1 302 -11 1458 188 7 41 chr12 39937357 39937649 -104344840 + AluJo SINE Alu 1 282 -30 328 294 17 8 chr12 39937843 39937961 -104344528 + LTR16C LTR ERVL 359 477 -14 4785 154 1 34 chr12 39937961 39938099 -104344390 - Tigger1 DNA MER2_type 0 2418 2277 1837 129 65 0 chr12 39938099 39938378 -104344111 + AluSx SINE Alu 2 298 -14 4785 154 1 34 chr12 39938378 39938912 -104343577 - Tigger1 DNA MER2_type -141 2277 1781 2134 130 3 0 chr12 39938912 39939211 -104343278 + AluSp SINE Alu 1 300 -13 4785 154 1 34 chr12 39939211 39939441 -104343048 - Tigger1 DNA MER2_type -637 1781 1545 526 134 244 25 chr12 39939429 39939548 -104342941 - Tigger1 DNA MER2_type -1210 1208 1064 * 1592 187 3 36 chr12 39939548 39939853 -104342636 - AluJb SINE Alu -17 295 1 745 168 18 18 chr12 39940411 39940578 -104341911 + ALR/Alpha Satellite centromeric 3 169 0 * 1197 150 4 2 chr12 39940428 39967341 -104315148 + ALR/Alpha Satellite centromeric 1 27099 -5212 980 56 0 0 chr12 39967341 39967466 -104315023 - L1PA3 LINE L1 -5 6150 6026 1197 150 4 2 chr12 39967466 39972652 -104309837 + ALR/Alpha Satellite centromeric 27099 32275 -36 2553 198 15 11 chr12 39972754 39973274 -104309215 - L1MC2 LINE L1 -207 6137 5616 207 288 25 0 chr12 39973275 39973355 -104309134 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 * 223 284 11 11 chr12 39973299 39973387 -104309102 + (TA)n Simple_repeat Simple_repeat 2 89 0 1435 132 207 0 chr12 39973547 39973789 -104308700 - AluSq SINE Alu -21 292 1 1453 161 4 28 chr12 39974134 39974388 -104308101 - AluSg/x SINE Alu 0 312 65 233 247 54 21 chr12 39974435 39974528 -104307961 - L1ME3A LINE L1 -223 5947 5852 1809 156 9 38 chr12 39974568 39974709 -104307780 + AluSx SINE Alu 1 145 -167 1747 160 11 0 chr12 39974709 39974991 -104307498 + AluY SINE Alu 8 292 -19 1809 156 9 38 chr12 39974991 39975164 -104307325 + AluSx SINE Alu 145 306 -6 1860 150 0 3 chr12 39975166 39975453 -104307036 + AluSx SINE Alu 3 288 -24 53 17 0 0 chr12 39975453 39975513 -104306976 + AT_rich Low_complexity Low_complexity 1 60 0 329 323 66 38 chr12 39975528 39975875 -104306614 - L1ME3A LINE L1 -405 5757 5413 1993 132 7 20 chr12 39975991 39976295 -104306194 - AluSq SINE Alu -9 304 5 1758 176 0 7 chr12 39977146 39977436 -104305053 - AluJb SINE Alu -24 288 1 508 122 0 0 chr12 39977566 39977640 -104304849 + AluSg/x SINE Alu 137 210 -100 201 74 0 0 chr12 39977992 39978019 -104304470 + (ATAAG)n Simple_repeat Simple_repeat 5 31 0 1260 236 28 10 chr12 39978150 39978462 -104304027 + MER93a LTR ERV1 4 366 -36 1214 152 4 1 chr12 39978570 39980402 -104302087 + ALR/Alpha Satellite centromeric 1 1837 -41 261 0 0 0 chr12 39981181 39981210 -104301279 + (T)n Simple_repeat Simple_repeat 1 29 0 971 202 11 5 chr12 39981210 39982366 -104300123 - ALR/Alpha Satellite centromeric 0 1162 1 630 280 126 43 chr12 39982476 39983055 -104299434 + SST1 Satellite centromeric 132 758 -805 226 303 65 19 chr12 39983243 39983398 -104299091 + SST1 Satellite centromeric 1391 1552 -11 231 258 0 0 chr12 39983416 39983482 -104299007 + (TG)n Simple_repeat Simple_repeat 1 66 0 753 290 50 52 chr12 39984562 39985103 -104297386 + SST1 Satellite centromeric 132 671 -892 406 277 66 69 chr12 39985506 39985914 -104296575 + SST1 Satellite centromeric 1130 1536 -27 341 165 10 0 chr12 39985919 39986016 -104296473 + (TG)n Simple_repeat Simple_repeat 1 98 0 1006 193 16 2 chr12 39986640 39986965 -104295524 - ALR/Alpha Satellite centromeric 0 329 1 1050 193 9 5 chr12 39986980 39990533 -104291956 - ALR/Alpha Satellite centromeric -1 3565 1 2946 259 65 51 chr12 39990825 39991080 -104291409 + SST1 Satellite centromeric 1 251 -1312 225 0 0 0 chr12 39991080 39991105 -104291384 + (CTGGGG)n Simple_repeat Simple_repeat 3 27 0 2946 259 65 51 chr12 39991105 39992390 -104290099 + SST1 Satellite centromeric 251 1562 -1 222 91 0 0 chr12 39992394 39992427 -104290062 + (TG)n Simple_repeat Simple_repeat 2 34 0 249 210 16 0 chr12 39992427 39992489 -104290000 + CT-rich Low_complexity Low_complexity 1 63 0 2066 268 63 43 chr12 39993211 39994571 -104287918 + SST1 Satellite centromeric 1 1387 -7 249 33 0 0 chr12 39994586 39994616 -104287873 + (TG)n Simple_repeat Simple_repeat 2 31 0 245 196 18 0 chr12 39994616 39994672 -104287817 + CT-rich Low_complexity Low_complexity 1 57 0 265 115 16 16 chr12 39994675 39994736 -104287753 + (TG)n Simple_repeat Simple_repeat 1 61 0 516 278 69 19 chr12 39995425 39995641 -104286848 + SST1 Satellite centromeric 6 232 -1331 1297 297 61 53 chr12 39995652 39996484 -104286005 + SST1 Satellite centromeric 413 1251 -312 7325 162 27 17 chr12 39997036 39998429 -104284060 + SST1 Satellite centromeric 1 1406 -157 830 142 0 15 chr12 39998512 39998646 -104283843 - AluSg/x SINE Alu -24 286 155 1252 173 127 11 chr12 39998652 39998935 -104283554 + SST1 Satellite centromeric 1238 1553 -10 220 133 22 22 chr12 39998979 39999024 -104283465 + CT-rich Low_complexity Low_complexity 2 46 0 807 193 7 0 chr12 40000004 40000144 -104282345 + AluY SINE Alu 1 141 -170 1984 133 11 3 chr12 40000147 40000432 -104282057 + AluSq SINE Alu 1 287 -26 456 51 0 0 chr12 40000442 40000501 -104281988 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 2079 136 0 0 chr12 40000621 40000907 -104281582 + AluSx SINE Alu 11 296 -16 375 223 0 39 chr12 40001259 40001362 -104281127 + MER33 DNA MER1_type 37 135 -189 868 119 22 15 chr12 40001362 40001496 -104280993 + FLAM_C SINE Alu 1 135 -8 1634 169 10 65 chr12 40001503 40001810 -104280679 + AluJb SINE Alu 3 292 -20 1382 149 9 0 chr12 40001830 40002045 -104280444 + AluSg/x SINE Alu 77 293 -17 333 0 0 0 chr12 40002053 40002090 -104280399 + (CA)n Simple_repeat Simple_repeat 2 38 0 1518 177 77 3 chr12 40002181 40002481 -104280008 + L1MB8 LINE L1 5848 6169 -9 507 149 21 0 chr12 40002559 40002653 -104279836 - AluSx SINE Alu 0 310 215 975 134 7 7 chr12 40002653 40002795 -104279694 - AluSx SINE Alu -170 142 1 1232 213 4 34 chr12 40002922 40003185 -104279304 + AluJb SINE Alu 1 255 -57 221 130 0 43 chr12 40003266 40003312 -104279177 + (CAAAAA)n Simple_repeat Simple_repeat 6 49 0 192 77 0 0 chr12 40003554 40003580 -104278909 + (CA)n Simple_repeat Simple_repeat 1 26 0 590 80 0 45 chr12 40005160 40005281 -104277208 + AluSg/x SINE Alu 206 312 0 1799 131 8 8 chr12 40005403 40005670 -104276819 + AluSx SINE Alu 24 290 -22 659 160 38 0 chr12 40005698 40005804 -104276685 - AluSq/x SINE Alu -202 111 2 266 276 57 8 chr12 40005928 40006051 -104276438 - HAL1b LINE L1 -5 1343 1215 1707 193 7 0 chr12 40006107 40006412 -104276077 + AluSx SINE Alu 4 310 -2 382 174 18 0 chr12 40006415 40006524 -104275965 + GA-rich Low_complexity Low_complexity 2 112 0 1520 207 19 10 chr12 40006529 40006838 -104275651 + MER44D DNA MER2_type 421 604 -1 262 218 39 0 chr12 40007114 40007196 -104275293 + (TA)n Simple_repeat Simple_repeat 1 85 0 1826 168 3 0 chr12 40007209 40007507 -104274982 - AluSx SINE Alu -13 299 1 1702 191 10 0 chr12 40007540 40007828 -104274661 + AluJb SINE Alu 1 291 -21 264 277 24 0 chr12 40007868 40007951 -104274538 - L1ME LINE L1 -545 5576 5492 2560 201 101 4 chr12 40007953 40008479 -104274010 + MER77 LTR ERV1 1 577 -28 2079 133 0 3 chr12 40008724 40009024 -104273465 - AluY SINE Alu -12 299 1 2298 120 3 0 chr12 40009156 40009464 -104273025 - AluSg SINE Alu -1 309 1 2324 152 19 17 chr12 40009530 40009950 -104272539 - L1PA15 LINE L1 0 6165 5745 2055 239 11 12 chr12 40009960 40010396 -104272093 + L1P LINE L1 4730 5166 -980 1781 124 19 8 chr12 40010396 40010661 -104271828 + AluSg SINE Alu 40 307 -3 2055 239 11 12 chr12 40010661 40010784 -104271705 + L1P LINE L1 5166 5288 -858 250 237 0 40 chr12 40010788 40010864 -104271625 + MER89 LTR ERV1 487 559 0 1907 144 7 7 chr12 40010919 40011203 -104271286 + AluSg SINE Alu 3 286 -24 548 130 0 0 chr12 40011212 40011289 -104271200 + AluS SINE Alu 2 78 -232 1008 163 0 0 chr12 40011403 40011649 -104270840 + (TA)n Simple_repeat Simple_repeat 1 246 0 4889 177 29 14 chr12 40012957 40013923 -104268566 + L1MC2 LINE L1 5361 6341 -3 1954 148 3 0 chr12 40013937 40014227 -104268262 - AluY SINE Alu -20 291 1 945 184 0 6 chr12 40014230 40014388 -104268101 - AluJb SINE Alu -19 293 137 226 37 0 0 chr12 40014404 40014431 -104268058 + L1M LINE L1 5384 5410 -2632 1057 199 12 4 chr12 40014434 40017126 -104265363 - ALR/Alpha Satellite centromeric 0 3406 392 2200 86 55 0 chr12 40017126 40017416 -104265073 - AluY SINE Alu -3 308 3 1057 199 12 4 chr12 40017416 40017812 -104264677 - ALR/Alpha Satellite centromeric -3014 392 1 815 218 10 0 chr12 40017828 40018328 -104264161 - ALR/Alpha Satellite centromeric -1 504 1 943 201 7 9 chr12 40018344 40022243 -104260246 - ALR/Alpha Satellite centromeric -4 3890 1 875 198 8 8 chr12 40022270 40023244 -104259245 - ALR/Alpha Satellite centromeric 0 973 1 297 0 0 0 chr12 40023250 40023283 -104259206 + (T)n Simple_repeat Simple_repeat 1 33 0 935 304 104 19 chr12 40023612 40024145 -104258344 + MER115 DNA AcHobo 15 631 -62 1421 147 11 18 chr12 40024565 40024850 -104257639 - L1MA4 LINE L1 0 6300 6018 354 236 66 158 chr12 40025135 40025376 -104257113 - MIR SINE MIR 0 262 44 1979 141 0 7 chr12 40025476 40025783 -104256706 + AluSx SINE Alu 1 305 0 303 320 50 0 chr12 40025877 40025977 -104256512 - L2 LINE L2 -15 3298 3194 423 322 76 19 chr12 40026530 40026741 -104255748 - MIR SINE MIR -12 250 28 23 68 0 0 chr12 40027112 40027156 -104255333 + AT_rich Low_complexity Low_complexity 1 44 0 297 303 35 7 chr12 40027157 40027302 -104255187 + L1M4 LINE L1 3717 3865 -2281 557 132 0 11 chr12 40027397 40027488 -104255001 - L1PA16 LINE L1 -8 6158 6069 720 190 0 44 chr12 40027726 40027863 -104254626 + FLAM_A SINE Alu 1 131 -2 1228 232 25 9 chr12 40027864 40028205 -104254284 - MER93a LTR ERV1 -7 395 4 575 218 132 10 chr12 40028680 40028877 -104253612 + L1M4 LINE L1 5097 5317 -829 1601 177 3 34 chr12 40028977 40029271 -104253218 + AluJb SINE Alu 21 305 -7 2002 169 7 0 chr12 40030094 40030402 -104252087 - AluSx SINE Alu -2 310 1 1958 144 3 13 chr12 40030690 40030995 -104251494 - AluSx SINE Alu -10 302 1 21 0 0 0 chr12 40031167 40031188 -104251301 + AT_rich Low_complexity Low_complexity 1 21 0 569 96 11 0 chr12 40031280 40031374 -104251115 - AluY SINE Alu 0 311 217 1167 130 0 11 chr12 40031601 40031785 -104250704 + AluSq SINE Alu 122 303 -10 1948 132 7 0 chr12 40031793 40032082 -104250407 + AluSx SINE Alu 1 291 -21 1940 143 16 0 chr12 40032088 40032395 -104250094 + AluSq SINE Alu 1 312 -1 713 217 62 76 chr12 40032842 40033118 -104249371 + PABL_B LTR ERV1 354 625 -42 1424 183 40 12 chr12 40033562 40033884 -104248605 + L1MB8 LINE L1 5848 6178 0 559 151 0 0 chr12 40033968 40034061 -104248428 - AluSx SINE Alu -3 306 214 943 162 0 0 chr12 40034061 40034203 -104248286 - AluSx SINE Alu -171 142 1 1620 182 14 14 chr12 40034333 40034624 -104247865 + AluJb SINE Alu 5 295 -17 189 74 0 0 chr12 40034707 40034734 -104247755 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 189 0 0 0 chr12 40035466 40035487 -104247002 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 1850 160 10 0 chr12 40036578 40036872 -104245617 - AluSx SINE Alu -15 297 1 1819 161 11 0 chr12 40036961 40037240 -104245249 - AluSx SINE Alu -28 284 3 232 271 57 8 chr12 40037375 40037497 -104244992 - HAL1b LINE L1 -6 1342 1215 1969 154 3 22 chr12 40037550 40037868 -104244621 + AluSx SINE Alu 1 312 0 327 88 59 15 chr12 40037875 40037943 -104244546 + GA-rich Low_complexity Low_complexity 1 71 0 1476 202 13 3 chr12 40037943 40038245 -104244244 + MER44D DNA MER2_type 428 604 -1 273 200 57 19 chr12 40038545 40038616 -104243873 + (TA)n Simple_repeat Simple_repeat 2 80 -30 1922 154 7 0 chr12 40038616 40038915 -104243574 - AluSx SINE Alu -11 301 1 273 200 57 19 chr12 40038915 40038948 -104243541 + (TA)n Simple_repeat Simple_repeat 80 110 0 1856 180 3 0 chr12 40038948 40039248 -104243241 + AluJb SINE Alu 1 301 -11 2070 222 118 6 chr12 40039358 40039875 -104242614 + MER77 LTR ERV1 1 575 -30 1925 142 0 0 chr12 40040249 40040530 -104241959 - AluSg SINE Alu -1 309 29 765 132 0 37 chr12 40040580 40040747 -104241742 + AluSp/q SINE Alu 172 313 0 494 82 14 0 chr12 40040952 40041025 -104241464 - AluSq/x SINE Alu -179 133 60 1224 136 0 31 chr12 40041033 40041224 -104241265 - AluSx SINE Alu -125 187 3 583 214 43 21 chr12 40041245 40041385 -104241104 + L2 LINE L2 3167 3309 -4 227 182 0 0 chr12 40041393 40041437 -104241052 - Charlie1 DNA MER1_type 0 2761 2718 920 220 9 37 chr12 40041446 40041664 -104240825 - AluSx SINE Alu -100 212 1 39 38 0 0 chr12 40042132 40042185 -104240304 + AT_rich Low_complexity Low_complexity 1 53 0 1161 208 27 7 chr12 40042185 40042484 -104240005 - L1MC/D LINE L1 -717 5627 5370 1000 178 0 0 chr12 40042489 40042646 -104239843 + FRAM SINE Alu 1 157 -19 1826 157 0 0 chr12 40042649 40042930 -104239559 + AluY SINE Alu 1 281 -30 2060 179 27 74 chr12 40043056 40043335 -104239154 + L1MB3 LINE L1 5334 5625 -558 1652 142 0 0 chr12 40043335 40043568 -104238921 + AluSg SINE Alu 1 233 -77 2060 179 27 74 chr12 40043568 40043587 -104238902 + L1MB3 LINE L1 5625 5643 -540 387 0 0 0 chr12 40043587 40043630 -104238859 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2060 179 27 74 chr12 40043630 40043854 -104238635 + L1MB3 LINE L1 5643 5832 -351 22 35 0 0 chr12 40043928 40043957 -104238532 + AT_rich Low_complexity Low_complexity 1 29 0 6909 121 2 10 chr12 40044637 40045704 -104236785 - THE1A-int LTR MaLR -522 1058 1 2344 113 3 43 chr12 40045704 40046074 -104236415 - THE1A LTR MaLR 0 355 1 499 263 46 46 chr12 40046074 40046359 -104236130 + L1ME LINE L1 5492 5776 -386 965 188 65 115 chr12 40046766 40047150 -104235339 + MLT1A1 LTR MaLR 1 365 0 1138 214 8 28 chr12 40048404 40048652 -104233837 + AluJo SINE Alu 16 258 -54 736 279 92 44 chr12 40048653 40049337 -104233152 + SST1 Satellite centromeric 847 1563 0 242 138 17 0 chr12 40049357 40049415 -104233074 + CT-rich Low_complexity Low_complexity 2 60 0 207 167 0 0 chr12 40049414 40049456 -104233033 + (TG)n Simple_repeat Simple_repeat 1 42 0 * 388 259 62 12 chr12 40049970 40050132 -104232357 + SST1 Satellite centromeric 256 425 -1138 6539 82 5 18 chr12 40050246 40050623 -104231866 + L1PA8 LINE L1 4972 5352 -820 2061 132 0 10 chr12 40050623 40050918 -104231571 + AluSq SINE Alu 1 292 -21 6539 82 5 18 chr12 40050918 40051735 -104230754 + L1PA8 LINE L1 5352 6169 -3 1864 167 11 11 chr12 40052736 40053083 -104229406 + MER7A DNA MER2_type 1 345 -1 308 316 23 30 chr12 40053519 40053652 -104228837 + L2 LINE L2 3178 3309 -4 24 85 0 0 chr12 40053958 40054017 -104228472 + AT_rich Low_complexity Low_complexity 1 59 0 1555 197 0 33 chr12 40054167 40054467 -104228022 + AluJo SINE Alu 1 290 -22 22 0 0 0 chr12 40054752 40054774 -104227715 + AT_rich Low_complexity Low_complexity 1 22 0 4584 34 0 0 chr12 40055436 40056017 -104226472 - L1PA2 LINE L1 -1282 4864 4284 7511 29 1 2 chr12 40056017 40057295 -104225194 + L1PA2 LINE L1 4875 6151 -4 21 0 0 0 chr12 40057513 40057534 -104224955 + AT_rich Low_complexity Low_complexity 1 21 0 1231 187 49 113 chr12 40059795 40060099 -104222390 - MLT1A1 LTR MaLR 0 365 90 2265 112 0 0 chr12 40060099 40060385 -104222104 - AluSg SINE Alu -24 286 1 1231 187 49 113 chr12 40060385 40060470 -104222019 - MLT1A1 LTR MaLR -275 90 1 1062 231 52 4 chr12 40061517 40061638 -104220851 + AluJo SINE Alu 1 115 -197 243 0 0 0 chr12 40061638 40061665 -104220824 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1062 231 52 4 chr12 40061665 40061772 -104220717 + AluJo SINE Alu 115 240 -72 595 89 0 11 chr12 40062191 40062281 -104220208 + L1PA16 LINE L1 6069 6157 -9 21 71 0 0 chr12 40062525 40062567 -104219922 + AT_rich Low_complexity Low_complexity 1 42 0 275 398 0 0 chr12 40062939 40063042 -104219447 + MIR SINE MIR 28 130 -132 1189 153 5 1 chr12 40063042 40071425 -104211064 + ALR/Alpha Satellite centromeric 1 8423 -31 1056 251 29 14 chr12 40071543 40071822 -104210667 - MLT1A1 LTR MaLR -57 308 26 1052 309 74 28 chr12 40073352 40073963 -104208526 + L2 LINE L2 2574 3223 -90 883 236 5 5 chr12 40073971 40074191 -104208298 - L1MB1 LINE L1 -13 6155 5936 1046 182 4 4 chr12 40074345 40077487 -104205002 + ALR/Alpha Satellite centromeric 1 3141 -35 1096 162 3 3 chr12 40077498 40081270 -104201219 + ALR/Alpha Satellite centromeric 1 3771 -10 1158 147 4 3 chr12 40081370 40087026 -104195463 - ALR/Alpha Satellite centromeric 0 5662 1 1170 164 10 3 chr12 40087054 40097867 -104184622 + ALR/Alpha Satellite centromeric 1 10893 -18 1164 159 5 1 chr12 40098012 40099006 -104183483 + ALR/Alpha Satellite centromeric 1 997 0 1222 172 6 0 chr12 40099018 40106018 -104176471 + ALR/Alpha Satellite centromeric 1 7037 0 1163 177 10 3 chr12 40106029 40111018 -104171471 + ALR/Alpha Satellite centromeric 1 5024 0 11397 51 9 1 chr12 40111028 40113743 -104168746 - L1PA3 LINE L1 -1 6154 3308 6314 44 0 0 chr12 40113740 40114551 -104167938 + L1PA3 LINE L1 2483 3293 -2853 * 1045 162 13 12 chr12 40114553 40118026 -104164463 + ALR/Alpha Satellite centromeric 1 3475 0 2860 27 0 0 chr12 40118035 40118372 -104164117 + L1PA2 LINE L1 5814 6150 -5 2191 144 11 11 chr12 40118392 40118767 -104163722 + L1PB1 LINE L1 5769 6143 -8 27 49 0 0 chr12 40118767 40118808 -104163681 + AT_rich Low_complexity Low_complexity 1 41 0 1023 179 2 1 chr12 40118833 40120101 -104162388 + ALR/Alpha Satellite centromeric 1 1269 -13 1088 172 4 3 chr12 40120114 40122505 -104159984 + ALR/Alpha Satellite centromeric 1 2393 -13 1017 172 3 1 chr12 40122517 40124393 -104158096 + ALR/Alpha Satellite centromeric 1 1880 -8 6631 125 5 3 chr12 40124393 40125360 -104157129 - LTR5 LTR ERVK 0 969 1 1000 171 3 5 chr12 40125372 40128628 -104153861 + ALR/Alpha Satellite centromeric 1 3249 -10 929 159 18 3 chr12 40128640 40129138 -104153351 + ALR/Alpha Satellite centromeric 1 505 -8 2742 125 3 0 chr12 40129138 40129530 -104152959 - LTR5 LTR ERVK 0 969 577 1258 99 5 42 chr12 40129540 40129731 -104152758 - LTR5 LTR ERVK -785 184 1 1127 153 8 4 chr12 40129732 40130746 -104151743 + ALR/Alpha Satellite centromeric 1 1017 -22 1058 162 5 2 chr12 40130874 40146536 -104135953 - ALR/Alpha Satellite centromeric -3 15698 1 4984 35 0 0 chr12 40146536 40147160 -104135329 - L1PA3 LINE L1 -1493 4653 4030 7515 29 0 1 chr12 40147160 40148666 -104133823 + L1PA3 LINE L1 4666 6171 0 972 172 2 3 chr12 40148701 40150674 -104131815 - ALR/Alpha Satellite centromeric 0 1969 1 1051 171 6 3 chr12 40150689 40156072 -104126417 - ALR/Alpha Satellite centromeric 0 5403 1 5372 90 39 25 chr12 40156073 40157061 -104125428 + SVA Other Other 2 863 -597 3130 83 31 74 chr12 40157670 40158370 -104124119 + SVA Other Other 336 868 -592 242 272 15 22 chr12 40158466 40158602 -104123887 + ALR/Alpha Satellite centromeric 9 143 -29 27968 75 3 3 chr12 40159102 40163032 -104119457 - L1P LINE L1 -2216 3930 1 1060 164 3 1 chr12 40163032 40165422 -104117067 + ALR/Alpha Satellite centromeric 1 2395 -36 1005 166 10 1 chr12 40165537 40169058 -104113431 + ALR/Alpha Satellite centromeric 1 3552 -7 1164 178 8 4 chr12 40169073 40170357 -104112132 + ALR/Alpha Satellite centromeric 1 1277 -4694 2111 141 0 0 chr12 40170357 40170656 -104111833 - AluY SINE Alu -12 299 1 1164 178 8 4 chr12 40170656 40175016 -104107473 + ALR/Alpha Satellite centromeric 1277 5970 -1 6423 67 31 45 chr12 40175026 40175993 -104106496 - SVA Other Other -1 1385 433 919 109 15 30 chr12 40176006 40176208 -104106281 - SVA Other Other -592 794 596 1874 55 0 4 chr12 40176361 40176598 -104105891 + L1PA4 LINE L1 4466 4701 -1445 1049 158 14 14 chr12 40176602 40176811 -104105678 + L1PA4 LINE L1 4935 5143 -1003 29 0 0 0 chr12 40176853 40176882 -104105607 + AT_rich Low_complexity Low_complexity 1 29 0 35 83 0 0 chr12 40177157 40177241 -104105248 + AT_rich Low_complexity Low_complexity 1 84 0 180 0 0 0 chr12 40177358 40177378 -104105111 + (G)n Simple_repeat Simple_repeat 1 20 0 21 80 0 0 chr12 40177485 40177510 -104104979 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr12 40177520 40177544 -104104945 + (C)n Simple_repeat Simple_repeat 1 24 0 7788 34 6 0 chr12 40227681 40228560 -104053929 + L1PA4 LINE L1 5271 6154 -1 1902 133 0 61 chr12 40228581 40228911 -104053578 - AluSg SINE Alu 0 310 1 1120 119 6 0 chr12 40228913 40229090 -104053399 + L1P LINE L1 4999 5176 -970 1093 167 8 3 chr12 40229190 40230172 -104052317 - ALR/Alpha Satellite centromeric -1 986 1 40834 59 2 0 chr12 40230272 40235351 -104047138 - L1P LINE L1 -1056 5090 4 1959 148 6 0 chr12 40235362 40235687 -104046802 - L1P LINE L1 -1141 5005 4679 443 207 0 0 chr12 40236420 40236507 -104045982 - AluJ/FRAM SINE Alu 0 312 226 1332 238 0 4 chr12 40236543 40236812 -104045677 + AluJo SINE Alu 1 268 -44 263 111 0 19 chr12 40236847 40236901 -104045588 + (TA)n Simple_repeat Simple_repeat 2 54 0 228 196 71 18 chr12 40241842 40241898 -104040591 - L1MCc LINE L1 -5507 916 858 2214 136 0 0 chr12 40242288 40242597 -104039892 - AluSg SINE Alu 0 310 2 33123 55 4 2 chr12 40245237 40250201 -104032288 + L1PA4 LINE L1 1177 6149 -6 1159 164 0 0 chr12 40250203 40250745 -104031744 + ALR/Alpha Satellite centromeric 1 542 -11 1195 163 8 5 chr12 40250757 40255109 -104027380 + ALR/Alpha Satellite centromeric 1 4364 -22 1225 166 7 3 chr12 40255122 40264558 -104017931 + ALR/Alpha Satellite centromeric 1 9397 -2555 252 0 0 0 chr12 40264558 40264586 -104017903 + (CA)n Simple_repeat Simple_repeat 1 28 0 1225 166 7 3 chr12 40264586 40266628 -104015861 + ALR/Alpha Satellite centromeric 9397 11880 -72 2211 111 0 46 chr12 40266628 40266952 -104015537 + AluY SINE Alu 1 309 -2 1225 166 7 3 chr12 40266952 40267025 -104015464 + ALR/Alpha Satellite centromeric 11880 11951 -1 180 111 0 0 chr12 40267026 40267053 -104015436 + (T)n Simple_repeat Simple_repeat 1 27 0 2455 104 0 0 chr12 40267053 40267379 -104015110 - LTR17 LTR ERV1 -454 326 1 9726 75 7 4 chr12 40267379 40268606 -104013883 - HERV17 LTR ERV1 0 8626 7397 9500 103 6 4 chr12 40268589 40269965 -104012524 - HERV17 LTR ERV1 -2947 5679 3799 * 833 207 5 8 chr12 40269965 40270215 -104012274 + ALR/Alpha Satellite centromeric 1 249 -22 35382 58 4 1 chr12 40270218 40276353 -104006136 + L1PA4 LINE L1 1 6149 -6 1159 164 0 0 chr12 40276355 40276897 -104005592 + ALR/Alpha Satellite centromeric 1 542 -11 1195 177 9 4 chr12 40276909 40282947 -103999542 + ALR/Alpha Satellite centromeric 1 6377 -401 1811 141 3 49 chr12 40282947 40283252 -103999237 + AluY SINE Alu 1 291 -20 1195 177 9 4 chr12 40283252 40283655 -103998834 + ALR/Alpha Satellite centromeric 6377 6777 -1 1628 195 7 3 chr12 40283655 40283947 -103998542 + AluSp SINE Alu 1 293 -20 1055 175 2 1 chr12 40283963 40284978 -103997511 + ALR/Alpha Satellite centromeric 1 1015 -15 3108 168 23 51 chr12 40284978 40285375 -103997114 - L1P LINE L1 -4369 1777 1406 1975 102 4 4 chr12 40285375 40285641 -103996848 - AluY SINE Alu -45 266 1 3108 168 23 51 chr12 40285641 40285933 -103996556 - L1P LINE L1 -4740 1406 1107 1766 178 0 3 chr12 40285939 40286226 -103996263 - AluSg SINE Alu -14 296 11 732 181 7 7 chr12 40286994 40287132 -103995357 + AluJb SINE Alu 4 141 -171 1001 178 8 58 chr12 40287778 40287863 -103994626 - L1MB4 LINE L1 -274 5906 5818 1388 220 0 30 chr12 40287863 40288163 -103994326 - AluJb SINE Alu -20 292 2 1001 178 8 58 chr12 40288163 40288319 -103994170 - L1MB4 LINE L1 -362 5818 5677 1445 173 0 0 chr12 40288386 40288611 -103993878 + AluJb SINE Alu 1 225 -87 1291 218 74 67 chr12 40288612 40289127 -103993362 - L1MB4 LINE L1 -504 5676 5174 420 300 7 0 chr12 40289212 40289362 -103993127 - L1MB4 LINE L1 -979 5167 5017 2528 148 19 7 chr12 40289366 40289784 -103992705 - L1PA14 LINE L1 -9 6152 5730 7579 198 49 23 chr12 40289824 40290142 -103992347 - L1PA14 LINE L1 -417 5744 5436 2298 122 0 0 chr12 40290142 40290445 -103992044 - AluSc SINE Alu -6 303 1 7579 198 49 23 chr12 40290445 40292464 -103990025 - L1PA14 LINE L1 -725 5436 3347 1662 271 43 32 chr12 40292503 40293219 -103989270 - L1MB4 LINE L1 -1115 5031 4308 1919 132 45 0 chr12 40293432 40293719 -103988770 + AluSq SINE Alu 1 300 -13 1197 309 30 23 chr12 40293967 40294404 -103988085 + LTR40a LTR ERVL 72 511 -8 322 292 117 0 chr12 40294681 40294801 -103987688 + HERVL40 LTR ERVL 1031 1164 -4366 1309 212 63 0 chr12 40295319 40295588 -103986901 - AluJb SINE Alu -25 287 2 21 36 0 0 chr12 40295638 40295666 -103986823 + AT_rich Low_complexity Low_complexity 1 28 0 288 267 23 118 chr12 40296029 40296250 -103986239 - MIR SINE MIR -18 244 45 29 70 0 0 chr12 40296610 40296667 -103985822 + AT_rich Low_complexity Low_complexity 1 57 0 326 347 17 11 chr12 40296699 40296875 -103985614 + C-rich Low_complexity Low_complexity 1 177 0 188 93 93 0 chr12 40297244 40297319 -103985170 + (TA)n Simple_repeat Simple_repeat 1 82 0 2031 112 0 17 chr12 40297320 40297614 -103984875 - AluSg SINE Alu -21 289 1 1739 166 0 17 chr12 40297768 40298080 -103984409 + AluSx SINE Alu 1 307 0 21 0 0 0 chr12 40298092 40298113 -103984376 + AT_rich Low_complexity Low_complexity 1 21 0 3689 228 48 15 chr12 40298211 40298511 -103983978 + L1M1 LINE L1 1453 1742 -5823 255 61 0 0 chr12 40298511 40298544 -103983945 + (CA)n Simple_repeat Simple_repeat 2 34 0 3689 228 48 15 chr12 40298544 40299053 -103983436 + L1M1 LINE L1 1742 2289 -5276 1395 136 120 12 chr12 40299071 40299329 -103983160 - AluSg SINE Alu -24 286 1 559 182 0 10 chr12 40299401 40299500 -103982989 + MER4A LTR ERV1 1 98 -566 1473 175 8 77 chr12 40299500 40299871 -103982618 + MER4A LTR ERV1 261 664 0 1771 151 58 0 chr12 40300245 40300536 -103981953 - AluSx SINE Alu -4 308 1 826 279 40 5 chr12 40301138 40301360 -103981129 + MIR SINE MIR 18 247 -15 1832 163 27 10 chr12 40301432 40301732 -103980757 + AluJb SINE Alu 1 305 -7 278 221 54 188 chr12 40301733 40301856 -103980633 + MIR SINE MIR 47 124 -138 2027 149 0 0 chr12 40301856 40302144 -103980345 + AluSx SINE Alu 1 288 -24 278 221 54 188 chr12 40302144 40302260 -103980229 + MIR SINE MIR 124 254 -8 526 264 113 59 chr12 40302282 40302457 -103980032 - MIR SINE MIR 0 262 69 1609 179 4 11 chr12 40302457 40302731 -103979758 - AluJo SINE Alu -23 289 18 526 264 113 59 chr12 40302731 40302794 -103979695 - MIR SINE MIR -193 69 11 206 61 0 30 chr12 40304051 40304084 -103978405 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 217 64 85 0 chr12 40304367 40304414 -103978075 + (TA)n Simple_repeat Simple_repeat 2 52 0 1984 143 0 0 chr12 40304414 40304700 -103977789 - AluSx SINE Alu -26 286 1 1702 182 7 3 chr12 40305050 40305341 -103977148 + AluSx SINE Alu 1 292 -20 1864 161 13 0 chr12 40306202 40306500 -103975989 + AluSx SINE Alu 1 302 -10 1607 157 0 116 chr12 40306512 40306849 -103975640 + AluJo SINE Alu 5 302 0 2083 132 3 0 chr12 40306856 40307152 -103975337 + AluSq SINE Alu 1 297 -16 1582 136 31 8 chr12 40307272 40307530 -103974959 + AluSx SINE Alu 1 264 -48 835 132 8 0 chr12 40307530 40307651 -103974838 - AluSq SINE Alu -128 185 64 993 203 67 17 chr12 40307790 40307853 -103974636 - L1MB7 LINE L1 0 6180 6122 569 233 16 8 chr12 40307853 40307982 -103974507 + FLAM_C SINE Alu 3 132 -1 993 203 67 17 chr12 40307982 40308192 -103974297 - L1MB7 LINE L1 -58 6122 5904 1916 130 0 7 chr12 40308603 40308921 -103973568 + AluSg SINE Alu 1 316 0 27 29 0 0 chr12 40308939 40308973 -103973516 + AT_rich Low_complexity Low_complexity 1 34 0 2348 105 3 3 chr12 40309203 40309516 -103972973 + AluSp SINE Alu 1 313 0 23 36 0 54 chr12 40309607 40309663 -103972826 + AT_rich Low_complexity Low_complexity 1 53 0 13429 40 3 1 chr12 40309664 40311971 -103970518 - L1PA2 LINE L1 0 6155 3840 25285 49 5 2 chr12 40311971 40315843 -103966646 + L1PA4 LINE L1 2183 6067 -88 304 259 172 43 chr12 40317483 40317599 -103964890 - AluJb SINE Alu 0 302 172 689 165 0 9 chr12 40317599 40317708 -103964781 + AluJb SINE Alu 180 287 -25 220 143 0 24 chr12 40317799 40317841 -103964648 + (TTA)n Simple_repeat Simple_repeat 2 42 0 566 219 0 0 chr12 40317849 40317963 -103964526 - AluSg/x SINE Alu 0 310 197 299 201 59 46 chr12 40317963 40318115 -103964374 + AluJb SINE Alu 78 218 -84 1290 188 0 39 chr12 40318115 40318371 -103964118 - AluJb SINE Alu -54 258 13 348 145 35 48 chr12 40318404 40318549 -103963940 + CT-rich Low_complexity Low_complexity 2 144 0 1700 154 32 4 chr12 40319187 40319466 -103963023 - AluSx SINE Alu -23 289 3 207 0 0 0 chr12 40319501 40319524 -103962965 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1316 206 29 4 chr12 40319718 40319990 -103962499 - AluSg SINE Alu -31 279 1 356 292 153 15 chr12 40320053 40320255 -103962234 - LTR54B LTR ERV1 -254 244 15 1255 180 137 23 chr12 40320569 40320825 -103961664 + AluJb SINE Alu 1 285 -17 31 58 0 0 chr12 40320891 40320943 -103961546 + AT_rich Low_complexity Low_complexity 1 52 0 779 186 7 7 chr12 40320960 40321100 -103961389 - AluJb SINE Alu -171 141 2 227 54 27 0 chr12 40321104 40321141 -103961348 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2111 128 0 3 chr12 40321833 40322131 -103960358 + AluSg SINE Alu 2 298 -12 1920 139 11 0 chr12 40322148 40322428 -103960061 + AluSp SINE Alu 1 283 -30 23 0 0 0 chr12 40322443 40322466 -103960023 + AT_rich Low_complexity Low_complexity 1 23 0 456 152 0 0 chr12 40322556 40322622 -103959867 - AluJ/FLAM SINE Alu -246 66 1 1606 174 0 21 chr12 40322643 40322924 -103959565 - AluSx SINE Alu -3 309 35 4487 83 2 3 chr12 40322925 40323505 -103958984 + LTR14C LTR ERVK 6 584 -3 266 150 0 0 chr12 40323507 40323547 -103958942 - AluSx SINE Alu -258 41 2 1428 204 75 13 chr12 40323579 40323887 -103958602 - ERVL LTR ERVL -2176 3588 3262 848 124 0 22 chr12 40324015 40324152 -103958337 - FRAM SINE Alu -23 153 20 304 224 0 0 chr12 40324214 40324272 -103958217 - AluJ/monomer SINE Alu -2 300 243 1370 164 4 13 chr12 40324272 40324503 -103957986 - PABL_B LTR ERV1 0 667 439 1730 166 20 0 chr12 40324503 40324799 -103957690 - AluSx SINE Alu -10 302 1 3586 119 0 4 chr12 40324842 40325355 -103957134 + MER9 LTR ERVK 1 511 0 2388 58 0 42 chr12 40326807 40327115 -103955374 + AluY SINE Alu 5 299 -12 187 291 152 0 chr12 40327185 40327264 -103955225 - L2 LINE L2 -498 2816 2726 1948 158 7 7 chr12 40327986 40328339 -103954150 - AluSx SINE Alu 0 354 2 708 274 53 55 chr12 40328373 40328949 -103953540 + L1M4c LINE L1 1185 1761 -4552 464 265 25 50 chr12 40328950 40329229 -103953260 + L1M4c LINE L1 1585 1856 -4528 2226 136 0 0 chr12 40331732 40332041 -103950448 + AluSg SINE Alu 2 310 0 231 196 71 18 chr12 40332431 40332487 -103950002 + L1MCc LINE L1 858 916 -5507 263 111 0 19 chr12 40337426 40337480 -103945009 + (TA)n Simple_repeat Simple_repeat 2 54 0 1304 237 0 7 chr12 40337515 40337785 -103944704 - AluJo SINE Alu -44 268 1 256 297 0 0 chr12 40337821 40337895 -103944594 + AluSp/q SINE Alu 226 299 -4 1947 148 6 0 chr12 40338643 40338968 -103943521 + L1P LINE L1 4679 5005 -1141 30477 63 2 0 chr12 40338979 40342810 -103939679 + L1P LINE L1 4 3840 -2306 24 0 0 0 chr12 40343221 40343245 -103939244 + AT_rich Low_complexity Low_complexity 1 24 0 1749 154 68 0 chr12 40343566 40343845 -103938644 - AluSx SINE Alu -14 298 1 1509 260 18 14 chr12 40343863 40344356 -103938133 - L1MB2 LINE L1 -3 6404 5910 484 256 47 24 chr12 40344343 40344554 -103937935 - L1MB2 LINE L1 -1285 5097 4882 * 7991 87 6 9 chr12 40344603 40345664 -103936825 - MER11C LTR ERVK -14 1057 1 180 0 0 0 chr12 40345680 40345700 -103936789 + (A)n Simple_repeat Simple_repeat 1 20 0 451 191 22 0 chr12 40345700 40345789 -103936700 - L1MB2 LINE L1 -1539 4843 4753 1013 265 36 70 chr12 40345796 40346216 -103936273 - L1MB2 LINE L1 -3265 3117 2684 225 0 0 0 chr12 40346216 40346241 -103936248 + (CA)n Simple_repeat Simple_repeat 2 26 0 1013 265 36 70 chr12 40346241 40346332 -103936157 - L1MB2 LINE L1 -3698 2684 2591 245 27 54 0 chr12 40346332 40346369 -103936120 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1979 79 79 0 chr12 40346375 40346629 -103935860 - AluY SINE Alu -36 275 2 1013 265 36 70 chr12 40346629 40346912 -103935577 - L1MB2 LINE L1 -3796 2586 2347 1617 62 14 0 chr12 40346912 40347121 -103935368 - L1PA4 LINE L1 -7 6148 5937 1176 153 5 3 chr12 40347274 40354727 -103927762 + ALR/Alpha Satellite centromeric 1 7467 -55 779 194 44 5 chr12 40354872 40355078 -103927411 - L1P LINE L1 -934 5212 4999 1880 136 0 61 chr12 40355080 40355410 -103927079 + AluSg SINE Alu 1 310 0 961 294 83 62 chr12 40355417 40355431 -103927058 - L1M1 LINE L1 -4036 2346 2334 1612 56 24 0 chr12 40355431 40355644 -103926845 - L1PA4 LINE L1 -1 6154 5937 961 294 83 62 chr12 40355644 40355802 -103926687 - L1M1 LINE L1 -4048 2334 2181 1954 146 0 20 chr12 40355802 40356104 -103926385 - AluSg SINE Alu -14 296 1 961 294 83 62 chr12 40356104 40356155 -103926334 - L1M1 LINE L1 -4201 2181 2133 2049 122 17 3 chr12 40356155 40356449 -103926040 - AluSx SINE Alu -14 298 1 961 294 83 62 chr12 40356449 40357168 -103925321 - L1M1 LINE L1 -4249 2133 1304 384 244 105 108 chr12 40357136 40357545 -103924944 - L1M1 LINE L1 -4808 1495 1088 * 2083 149 3 0 chr12 40357723 40358025 -103924464 - AluSp SINE Alu -10 303 1 988 261 47 41 chr12 40359038 40359402 -103923087 + MLT1B LTR MaLR 25 390 0 199 22 0 130 chr12 40360149 40360195 -103922294 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1021 237 12 67 chr12 40360195 40360541 -103921948 - L1MA9 LINE L1 -41 6271 5945 6641 23 0 0 chr12 40360807 40361560 -103920929 - L1PA3 LINE L1 0 6155 5403 * 9095 28 0 0 chr12 40361557 40362629 -103919860 + L1PA3 LINE L1 4326 5397 -749 626 159 0 15 chr12 40363691 40363961 -103918528 + AluSx SINE Alu 6 334 0 417 244 78 35 chr12 40363973 40364088 -103918401 + FRAM SINE Alu 5 124 -52 862 42 17 8 chr12 40364098 40364217 -103918272 + (GAAA)n Simple_repeat Simple_repeat 4 123 0 1551 146 50 0 chr12 40364221 40364461 -103918028 + AluSc SINE Alu 50 301 -8 961 191 17 47 chr12 40364576 40364594 -103917895 - AluSg/x SINE Alu 0 310 293 2165 140 0 0 chr12 40364594 40364902 -103917587 - AluSg SINE Alu -2 308 1 961 191 17 47 chr12 40364902 40365118 -103917371 - AluSg/x SINE Alu -17 293 83 1979 119 0 31 chr12 40365128 40365448 -103917041 - AluSg SINE Alu 0 310 1 410 119 0 0 chr12 40365610 40365669 -103916820 - AluJ/FLAM SINE Alu -239 63 5 914 198 140 27 chr12 40365738 40365995 -103916494 - AluJo SINE Alu -16 286 1 219 69 0 0 chr12 40366031 40366060 -103916429 + (T)n Simple_repeat Simple_repeat 1 29 0 203 164 18 55 chr12 40366425 40366480 -103916009 + G-rich Low_complexity Low_complexity 2 54 0 1029 233 22 11 chr12 40366537 40366808 -103915681 + L1PA13 LINE L1 5889 6162 -1 1913 126 7 7 chr12 40367007 40367300 -103915189 - AluSx SINE Alu -9 303 11 686 236 16 16 chr12 40367621 40367812 -103914677 - MER39B LTR ERV1 -1 652 462 689 210 0 7 chr12 40367813 40367951 -103914538 + MER39B LTR ERV1 275 411 -242 1840 156 4 0 chr12 40368169 40368444 -103914045 + AluSp SINE Alu 5 280 -33 201 180 33 33 chr12 40369982 40370043 -103912446 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 436 212 6 11 chr12 40370350 40370529 -103911960 + CT-rich Low_complexity Low_complexity 2 179 0 567 185 0 22 chr12 40370546 40370730 -103911759 + CT-rich Low_complexity Low_complexity 1 180 0 237 301 0 26 chr12 40371136 40371249 -103911240 - L1MC/D LINE L1 -585 5774 5665 1715 140 85 4 chr12 40372112 40372383 -103910106 - AluSg SINE Alu -17 293 1 273 291 31 16 chr12 40372516 40372643 -103909846 - LTR54B LTR ERV1 -352 146 18 829 255 139 24 chr12 40372952 40373203 -103909286 + AluJb SINE Alu 1 280 -32 180 111 0 0 chr12 40373203 40373230 -103909259 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 30 27 0 0 chr12 40373294 40373331 -103909158 + AT_rich Low_complexity Low_complexity 1 37 0 674 181 7 7 chr12 40373348 40373486 -103909003 - AluJb SINE Alu -171 141 4 1793 178 0 3 chr12 40374244 40374531 -103907958 + AluSg SINE Alu 1 286 -24 278 158 37 85 chr12 40374565 40374647 -103907842 + MIR SINE MIR 177 254 -8 581 283 124 9 chr12 40374669 40374844 -103907645 - MIR SINE MIR 0 262 54 1635 192 3 11 chr12 40374844 40375131 -103907358 - AluJo SINE Alu -23 289 5 581 283 124 9 chr12 40375131 40375181 -103907308 - MIR SINE MIR -208 54 11 281 301 116 46 chr12 40376463 40376679 -103905810 + L3 LINE CR1 609 839 -738 517 292 104 0 chr12 40376713 40376867 -103905622 + MIR SINE MIR 44 213 -49 216 158 0 0 chr12 40376874 40376912 -103905577 + (ATGGTG)n Simple_repeat Simple_repeat 1 38 0 1146 156 8 2 chr12 40377044 40387689 -103894800 + ALR/Alpha Satellite centromeric 1 10702 -23 1104 145 4 1 chr12 40387794 40390856 -103891633 + ALR/Alpha Satellite centromeric 1 3069 -12 1128 148 7 3 chr12 40390871 40395897 -103886592 + ALR/Alpha Satellite centromeric 1 5044 -32 1143 137 9 3 chr12 40395997 40404423 -103878066 + ALR/Alpha Satellite centromeric 1 8473 -1 3069 230 22 75 chr12 40404427 40405445 -103877044 + LTR5 LTR ERVK 6 969 0 1135 155 4 2 chr12 40405452 40410030 -103872459 + ALR/Alpha Satellite centromeric 1 4588 -50 652 158 20 40 chr12 40410361 40410658 -103871831 + (ATGGTG)n Simple_repeat Simple_repeat 1 291 0 241 265 0 0 chr12 40410694 40410743 -103871746 - MIR SINE MIR -211 51 3 183 346 13 13 chr12 40410789 40410867 -103871622 + L3 LINE CR1 869 946 -631 2087 135 0 0 chr12 40410982 40411307 -103871182 + AluSq SINE Alu 1 313 0 729 201 7 14 chr12 40411351 40411490 -103870999 + AluJ SINE Alu 4 141 -171 295 267 224 12 chr12 40411490 40411651 -103870838 + L3 LINE CR1 1192 1386 -191 326 253 167 37 chr12 40411774 40411936 -103870553 + MER5A DNA MER1_type 7 189 0 1226 148 18 18 chr12 40413408 40413625 -103868864 - AluJo SINE Alu 0 312 96 1276 196 50 18 chr12 40413771 40414051 -103868438 - AluJo SINE Alu -23 289 1 990 190 0 16 chr12 40414067 40414251 -103868238 + AluJ SINE Alu 132 312 0 230 0 33 0 chr12 40414359 40414389 -103868100 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6693 70 33 0 chr12 40414401 40415269 -103867220 + MER11D LTR ERVK 1 897 0 6163 79 0 3 chr12 40415278 40416134 -103866355 + HERVK11D LTR ERVK 10 862 -6890 36631 46 1 2 chr12 40416134 40420819 -103861670 + HERVK11D LTR ERVK 3073 7752 0 6147 87 27 0 chr12 40420841 40421691 -103860798 + MER11D LTR ERVK 25 897 0 1736 160 7 18 chr12 40421691 40421973 -103860516 - AluSx SINE Alu -33 279 1 278 304 106 50 chr12 40422088 40422249 -103860240 - MIR3 SINE MIR -9 199 30 217 254 17 0 chr12 40423012 40423071 -103859418 - L2 LINE L2 0 3313 3254 180 321 54 0 chr12 40423057 40423113 -103859376 - L2 LINE L2 -696 2618 2560 * 2002 160 26 11 chr12 40424113 40424596 -103857893 + L1M2 LINE L1 2536 3029 -3819 5782 89 15 28 chr12 40424699 40424852 -103857637 + L1PA8 LINE L1 5205 5358 -814 1552 151 52 4 chr12 40424852 40425124 -103857365 + AluSg SINE Alu 1 285 -25 198 0 0 0 chr12 40425127 40425149 -103857340 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 5782 89 15 28 chr12 40425149 40425867 -103856622 + L1PA8 LINE L1 5360 6082 -90 571 110 0 0 chr12 40425867 40425949 -103856540 + AluS SINE Alu 1 82 -231 678 48 0 0 chr12 40425949 40426033 -103856456 + L1PA8 LINE L1 6071 6154 -18 548 212 67 44 chr12 40426686 40426862 -103855627 - MER93a LTR ERV1 0 402 191 2236 81 7 0 chr12 40426862 40427160 -103855329 + AluSp SINE Alu 1 300 -13 1874 124 0 20 chr12 40427247 40427546 -103854943 + AluY SINE Alu 6 298 -13 883 314 44 19 chr12 40427582 40428059 -103854430 - L1 LINE L1 -1816 4330 3842 319 182 47 48 chr12 40428057 40428162 -103854327 - L1 LINE L1 -2546 3600 3496 * 996 155 62 0 chr12 40428403 40428870 -103853619 - GSATX Satellite centromeric -8 495 1 1296 158 51 2 chr12 40428889 40431868 -103850621 - GSATX Satellite centromeric -10 3124 1 1280 172 44 5 chr12 40431886 40437477 -103845012 - GSATX Satellite centromeric -22 5810 1 373 186 0 20 chr12 40439917 40440019 -103842470 + GA-rich Low_complexity Low_complexity 3 102 0 362 283 125 87 chr12 40440033 40440298 -103842191 + HAL1 LINE L1 861 1114 -1393 1259 235 3 40 chr12 40440298 40440596 -103841893 + AluJo SINE Alu 1 287 -15 362 283 125 87 chr12 40440596 40440700 -103841789 + HAL1 LINE L1 1114 1213 -1294 1667 140 0 67 chr12 40440700 40441028 -103841461 + AluSg SINE Alu 5 310 0 362 283 125 87 chr12 40441028 40441225 -103841264 + HAL1 LINE L1 1213 1377 -1130 283 283 13 50 chr12 40441425 40441658 -103840831 + CT-rich Low_complexity Low_complexity 1 224 0 612 186 154 32 chr12 40441885 40442152 -103840337 - GSATX Satellite centromeric -21 299 1 674 143 25 8 chr12 40442660 40442779 -103839710 - 5S rRNA rRNA 0 121 1 255 79 0 0 chr12 40443571 40443609 -103838880 + (CA)n Simple_repeat Simple_repeat 1 38 0 269 255 7 0 chr12 40443639 40443780 -103838709 + GA-rich Low_complexity Low_complexity 2 143 0 723 104 61 9 chr12 40444596 40444711 -103837778 - 5S rRNA rRNA 0 121 1 15060 186 65 28 chr12 40445094 40448213 -103834276 - L1M1 LINE L1 -4311 3254 19 2762 169 76 6 chr12 40448224 40448764 -103833725 - LTR23-int LTR ERV1 -1975 5562 4985 25 31 0 0 chr12 40448797 40448829 -103833660 + AT_rich Low_complexity Low_complexity 1 32 0 1974 118 0 0 chr12 40449019 40449306 -103833183 + AluSx SINE Alu 18 304 -8 398 213 24 30 chr12 40449364 40449533 -103832956 - LTR23-int LTR ERV1 -3030 2093 1926 1036 190 6 2 chr12 40449701 40453397 -103829092 - ALR/Alpha Satellite centromeric 0 3712 1 1006 165 5 4 chr12 40453410 40454423 -103828066 - ALR/Alpha Satellite centromeric 0 1013 1 1238 166 7 3 chr12 40454523 40467491 -103814998 + ALR/Alpha Satellite centromeric 1 13020 -32 250 118 98 0 chr12 40467644 40467695 -103814794 - LTR49-int LTR ERV1 -3870 2888 2833 312 244 0 39 chr12 40467797 40467875 -103814614 - LTR49-int LTR ERV1 -2885 3446 3372 436 255 0 9 chr12 40467953 40468059 -103814430 - LTR49-int LTR ERV1 -2991 3340 3236 1706 100 0 16 chr12 40468193 40468442 -103814047 - L1PA14 LINE L1 -5 6156 5912 245 94 0 0 chr12 40468443 40468475 -103814014 - L1PA14 LINE L1 -342 5813 5782 2267 101 6 173 chr12 40468475 40468979 -103813510 - LTR66 LTR ERVL 0 610 191 965 118 0 0 chr12 40468996 40469132 -103813357 + AluSx SINE Alu 18 153 -159 945 72 149 111 chr12 40469134 40469254 -103813235 - LTR66 LTR ERVL -422 188 57 389 21 0 0 chr12 40469254 40469302 -103813187 - L1PA3 LINE L1 -3 6152 6105 945 72 149 111 chr12 40469302 40469362 -103813127 - LTR66 LTR ERVL -553 57 1 2960 129 25 4 chr12 40469362 40469842 -103812647 - L1PA14 LINE L1 -375 5786 5297 * 5395 114 11 5 chr12 40469831 40470638 -103811851 - L1PB1 LINE L1 -1 6150 5339 3351 226 4 0 chr12 40470636 40471432 -103811057 + L1PB1 LINE L1 4552 5350 -796 * 9681 196 20 46 chr12 40471427 40472290 -103810199 - L1PB1 LINE L1 -812 5334 4450 254 25 0 0 chr12 40472290 40472330 -103810159 - AluY SINE Alu 0 300 261 9681 196 20 46 chr12 40472330 40473817 -103808672 - L1PB1 LINE L1 -1696 4450 3016 21 0 0 0 chr12 40474128 40474149 -103808340 + AT_rich Low_complexity Low_complexity 1 21 0 222 192 0 0 chr12 40474793 40474845 -103807644 + (CA)n Simple_repeat Simple_repeat 2 53 0 208 273 0 23 chr12 40474994 40475082 -103807407 + L2 LINE L2 1996 2081 -1233 1829 108 78 34 chr12 40476091 40476386 -103806103 - AluY SINE Alu -3 308 1 1398 176 14 0 chr12 40477784 40478063 -103804426 - L1PB4 LINE L1 -260 5896 5614 286 192 68 14 chr12 40478322 40478395 -103804094 + L2 LINE L2 3191 3267 -5 187 289 0 0 chr12 40479150 40479195 -103803294 + L2 LINE L2 3261 3305 -8 222 296 169 0 chr12 40479317 40479388 -103803101 + L2 LINE L2 3190 3272 0 38 39 0 0 chr12 40480404 40480456 -103802033 + AT_rich Low_complexity Low_complexity 1 52 0 536 287 73 20 chr12 40480498 40480926 -103801563 - MLT1H1 LTR MaLR -120 447 1 359 176 0 0 chr12 40481607 40481675 -103800814 - L1PA16 LINE L1 -795 5371 5304 1336 173 32 7 chr12 40481679 40481956 -103800533 + L1PA16 LINE L1 5390 5673 -493 243 233 33 0 chr12 40482125 40482185 -103800304 + GA-rich Low_complexity Low_complexity 4 65 0 24 53 0 0 chr12 40483041 40483079 -103799410 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 40483268 40483289 -103799200 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr12 40483415 40483449 -103799040 + AT_rich Low_complexity Low_complexity 1 34 0 1937 158 38 97 chr12 40483449 40483974 -103798515 + L1PA16 LINE L1 5652 6145 -21 10201 210 103 14 chr12 40483985 40486488 -103796001 + L1M1 LINE L1 17 2741 -4824 691 376 19 24 chr12 40486838 40487428 -103795061 + L1PA13 LINE L1 788 1374 -6200 286 260 21 21 chr12 40487578 40487674 -103794815 + L1PA13 LINE L1 2085 2180 -5401 461 248 0 0 chr12 40487936 40488049 -103794440 + FRAM SINE Alu 63 175 -1 332 331 36 26 chr12 40488062 40488217 -103794272 + MIR3 SINE MIR 31 187 -21 333 371 66 65 chr12 40488306 40488733 -103793756 - L2 LINE L2 -49 3223 2796 2205 83 33 3 chr12 40488753 40489053 -103793436 - AluY SINE Alu -2 309 1 8432 38 27 0 chr12 40489310 40490403 -103792086 + L1P LINE L1 3589 4711 -1435 23 68 0 0 chr12 40490878 40490922 -103791567 + AT_rich Low_complexity Low_complexity 1 44 0 2035 167 96 15 chr12 40491007 40491415 -103791074 - MER65A LTR ERV1 -4 441 1 241 309 31 0 chr12 40491415 40491512 -103790977 - MER81 DNA DNA -6 108 9 1787 150 34 50 chr12 40491512 40491893 -103790596 + THE1C LTR MaLR 1 375 0 682 241 7 28 chr12 40491960 40492105 -103790384 + MER5A DNA MER1_type 1 142 -47 2230 25 2 0 chr12 40492709 40493135 -103789354 - L1P1 LINE L1 -630 5525 5099 10231 43 12 3 chr12 40493135 40495171 -103787318 + L1PA5 LINE L1 4106 6154 0 349 303 147 52 chr12 40495495 40495726 -103786763 + MIR SINE MIR 10 262 0 785 272 7 22 chr12 40496344 40496620 -103785869 - L1PBa LINE L1 -6586 277 6 532 257 106 41 chr12 40496645 40496780 -103785709 + L2 LINE L2 3005 3130 -183 2063 134 39 3 chr12 40496780 40497115 -103785374 + MER7A DNA MER2_type 1 345 -1 532 257 106 41 chr12 40497115 40497224 -103785265 + L2 LINE L2 3130 3265 -48 326 104 42 0 chr12 40498583 40498631 -103783858 + MIR SINE MIR 56 105 -157 364 314 124 29 chr12 40499788 40499998 -103782491 + MIR SINE MIR 1 230 -32 324 313 170 9 chr12 40500824 40500936 -103781553 - L2 LINE L2 -9 3263 3134 860 280 25 13 chr12 40500954 40501190 -103781299 + MIR SINE MIR 14 252 -10 208 336 97 0 chr12 40501341 40501454 -103781035 - L2 LINE L2 -225 3047 2924 301 307 136 7 chr12 40501500 40501640 -103780849 - L2 LINE L2 -458 2856 2699 22 35 0 0 chr12 40502155 40502184 -103780305 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr12 40503464 40503486 -103779003 + AT_rich Low_complexity Low_complexity 1 22 0 633 133 8 23 chr12 40503817 40503945 -103778544 + LTR14B LTR ERVK 483 608 0 2274 165 110 12 chr12 40503977 40504486 -103778003 + L1PBa LINE L1 605 1163 -5700 7659 129 31 8 chr12 40504503 40505921 -103776568 + L1PBa LINE L1 1332 2782 -4081 4706 209 16 3 chr12 40505929 40507074 -103775415 + L1 LINE L1 3842 5000 -1862 10392 61 21 2 chr12 40507174 40508625 -103773864 - L1P LINE L1 -1575 4571 3094 * 16979 89 4 1 chr12 40508605 40511044 -103771445 - L1P LINE L1 -3655 2491 45 4400 245 51 15 chr12 40511144 40511442 -103771047 + L1M1 LINE L1 2819 3105 -4460 1717 29 0 5 chr12 40511442 40511652 -103770837 + L1PA3 LINE L1 5944 6152 -3 4400 245 51 15 chr12 40511652 40513700 -103768789 + L1M1 LINE L1 3105 5310 -2255 2100 140 7 3 chr12 40513700 40514000 -103768489 + AluSx SINE Alu 1 304 -8 228 35 0 0 chr12 40514000 40514029 -103768460 + (CACAA)n Simple_repeat Simple_repeat 4 32 0 4400 245 51 15 chr12 40514036 40514397 -103768092 + L1M1 LINE L1 5310 5657 -1908 1984 196 38 17 chr12 40514412 40514831 -103767658 + MSTA LTR MaLR 1 428 0 5674 213 110 58 chr12 40514833 40516333 -103766156 + MSTA-int LTR MaLR 3 1651 0 1537 239 62 10 chr12 40516335 40516740 -103765749 + MSTA LTR MaLR 3 428 0 3117 217 24 20 chr12 40516740 40517631 -103764858 + L1M1 LINE L1 5668 6561 -1004 708 330 171 31 chr12 40518015 40518534 -103763955 + L2 LINE L2 2347 2938 -376 476 292 152 8 chr12 40518602 40518866 -103763623 + L2 LINE L2 3012 3313 0 271 355 73 8 chr12 40521062 40521186 -103761303 - MIR SINE MIR -57 151 20 24 0 0 0 chr12 40522497 40522521 -103759968 + AT_rich Low_complexity Low_complexity 1 24 0 1676 211 0 3 chr12 40523744 40524028 -103758461 - AluJb SINE Alu -29 283 1 465 235 189 8 chr12 40524029 40524161 -103758328 - MER5A DNA MER1_type -6 183 28 676 247 16 52 chr12 40524174 40524368 -103758121 - MER5A DNA MER1_type 0 189 3 419 250 0 0 chr12 40524814 40524890 -103757599 - AluJ/FLAM SINE Alu -234 78 3 444 242 189 8 chr12 40524893 40525025 -103757464 - MER5A DNA MER1_type -6 183 28 658 258 16 52 chr12 40525038 40525232 -103757257 - MER5A DNA MER1_type 0 189 3 236 256 267 0 chr12 40525548 40525638 -103756851 - MIR SINE MIR -67 141 28 374 367 67 24 chr12 40526177 40526548 -103755941 + L2 LINE L2 2249 2635 -679 23 0 0 0 chr12 40526839 40526862 -103755627 + AT_rich Low_complexity Low_complexity 1 23 0 2384 53 33 3 chr12 40528434 40528734 -103753755 + AluY SINE Alu 1 309 -2 306 374 42 60 chr12 40528754 40529184 -103753305 + L2 LINE L2 2796 3226 -46 399 355 14 0 chr12 40529270 40529411 -103753078 - MIR3 SINE MIR -21 187 45 1556 220 7 0 chr12 40529438 40529747 -103752742 - AluJo SINE Alu -1 311 1 329 363 51 25 chr12 40532275 40532432 -103750057 + MIR3 SINE MIR 20 180 -28 442 228 0 0 chr12 40532530 40532622 -103749867 - L2 LINE L2 0 3313 3222 1025 368 17 20 chr12 40533091 40533680 -103748809 + L1PA13 LINE L1 788 1374 -6200 363 238 30 20 chr12 40533830 40533931 -103748558 + L1PA13 LINE L1 2085 2186 -5395 818 311 6 22 chr12 40534175 40534497 -103747992 + L1PA13 LINE L1 2191 2507 -5074 2134 134 8 52 chr12 40534501 40534882 -103747607 - THE1B LTR MaLR 0 364 1 10960 99 12 38 chr12 40534884 40536504 -103745985 - THE1B-int LTR MaLR -2 1578 1 1346 193 14 41 chr12 40536504 40536794 -103745695 - THE1B LTR MaLR 0 364 83 656 113 28 0 chr12 40536894 40537000 -103745489 - THE1B-int LTR MaLR -1471 109 1 2096 151 8 30 chr12 40537000 40537372 -103745117 - THE1B LTR MaLR 0 364 1 4106 259 58 40 chr12 40537380 40539901 -103742588 + L1PA13 LINE L1 2529 5072 -2512 1112 217 91 78 chr12 40540178 40540639 -103741850 - MLT1C LTR MaLR 0 467 1 23 0 0 0 chr12 40540691 40540714 -103741775 + AT_rich Low_complexity Low_complexity 1 23 0 3339 163 18 20 chr12 40540714 40541372 -103741117 - L1MA7 LINE L1 -16 6275 5619 2193 108 3 3 chr12 40542253 40542559 -103739930 - AluSq SINE Alu -7 306 1 1217 93 137 10 chr12 40544292 40544396 -103738093 - MER30 DNA MER1_type 0 230 141 395 0 0 39 chr12 40544396 40544448 -103738041 + (TTTTA)n Simple_repeat Simple_repeat 2 51 0 1217 93 137 10 chr12 40544448 40544547 -103737942 - MER30 DNA MER1_type -89 141 1 24 67 0 0 chr12 40544748 40544793 -103737696 + AT_rich Low_complexity Low_complexity 1 45 0 329 206 11 0 chr12 40545249 40545341 -103737148 + (TA)n Simple_repeat Simple_repeat 1 93 0 619 153 29 58 chr12 40545342 40545479 -103737010 - FLAM_C SINE Alu -5 138 6 534 319 91 26 chr12 40545617 40545849 -103736640 - MIR SINE MIR -8 254 8 270 364 120 26 chr12 40545888 40546196 -103736293 + L3 LINE CR1 993 1329 -248 651 250 158 10 chr12 40547088 40547284 -103735205 - MIR SINE MIR -32 230 6 3437 73 5 2 chr12 40547969 40548410 -103734079 - SVA Other Other -4 1382 941 1048 231 4 8 chr12 40548510 40548765 -103733724 + L1 LINE L1 3847 4100 -2046 280 269 173 0 chr12 40548967 40549071 -103733418 + MIR SINE MIR 68 189 -73 259 308 67 29 chr12 40549499 40549603 -103732886 + MIR SINE MIR 49 144 -64 1722 229 56 0 chr12 40550556 40550932 -103731557 - MLT1D LTR MaLR -122 383 1 320 366 91 11 chr12 40550943 40551129 -103731360 + MIR SINE MIR 30 230 -32 21 0 0 0 chr12 40551217 40551238 -103731251 + AT_rich Low_complexity Low_complexity 1 21 0 258 81 0 0 chr12 40551408 40551445 -103731044 + (TG)n Simple_repeat Simple_repeat 2 38 0 1566 179 36 4 chr12 40551452 40551726 -103730763 - AluJb SINE Alu -29 283 1 286 258 61 61 chr12 40551932 40552017 -103730472 - MER3 DNA MER1_type 0 209 125 1478 121 5 0 chr12 40552017 40552224 -103730265 + AluSg/x SINE Alu 84 291 -21 286 258 61 61 chr12 40552224 40552336 -103730153 - MER3 DNA MER1_type -83 126 12 227 267 256 0 chr12 40552419 40552505 -103729984 + L2 LINE L2 3205 3312 -1 1273 39 0 0 chr12 40553702 40553858 -103728631 + L1PA4 LINE L1 5996 6151 -4 26 0 0 0 chr12 40554273 40554299 -103728190 + AT_rich Low_complexity Low_complexity 1 26 0 293 335 50 41 chr12 40555783 40556004 -103726485 - MLT1I LTR MaLR -55 354 132 48 53 0 0 chr12 40556030 40556106 -103726383 + AT_rich Low_complexity Low_complexity 1 76 0 307 145 16 16 chr12 40556492 40556554 -103725935 + L1ME1 LINE L1 6102 6163 -3 183 204 0 0 chr12 40556737 40556781 -103725708 + A-rich Low_complexity Low_complexity 1 44 0 28 0 0 0 chr12 40557249 40557277 -103725212 + AT_rich Low_complexity Low_complexity 1 28 0 1037 225 84 3 chr12 40557388 40557672 -103724817 - MER5C DNA MER1_type -6 318 12 490 114 0 0 chr12 40557878 40557957 -103724532 - L1PA14 LINE L1 -5 6156 6078 918 280 47 9 chr12 40557973 40558316 -103724173 + L1ME LINE L1 5317 5672 -498 342 0 0 0 chr12 40558328 40558366 -103724123 + (CA)n Simple_repeat Simple_repeat 2 39 0 963 282 32 66 chr12 40558367 40558870 -103723619 - L1MCc LINE L1 -5287 1136 651 22 56 0 0 chr12 40559460 40559496 -103722993 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr12 40559951 40559979 -103722510 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr12 40560274 40560302 -103722187 + AT_rich Low_complexity Low_complexity 1 28 0 255 273 40 20 chr12 40560627 40560726 -103721763 - MLT1I LTR MaLR -3 406 306 208 242 94 30 chr12 40561213 40561314 -103721175 - MER5B DNA MER1_type -73 105 12 210 342 59 53 chr12 40561468 40561620 -103720869 + MIR3 SINE MIR 53 205 -3 204 40 0 0 chr12 40562700 40562725 -103719764 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 236 336 9 0 chr12 40566555 40566668 -103715821 + (CA)n Simple_repeat Simple_repeat 2 115 0 40824 54 6 3 chr12 40567425 40573426 -103709063 + L1PA4 LINE L1 121 6141 -14 285 281 117 0 chr12 40574006 40574134 -103708355 - MIR SINE MIR 0 262 120 189 0 0 0 chr12 40575356 40575377 -103707112 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 28 71 0 0 chr12 40576160 40576216 -103706273 + AT_rich Low_complexity Low_complexity 1 56 0 560 189 76 185 chr12 40576408 40576760 -103705729 - LTR28 LTR ERV1 -101 906 1 726 308 161 9 chr12 40577991 40578332 -103704157 - MLT1J LTR MaLR -30 481 89 22 0 0 0 chr12 40578449 40578471 -103704018 + AT_rich Low_complexity Low_complexity 1 22 0 1335 249 71 51 chr12 40579207 40579697 -103702792 - MLT1D LTR MaLR 0 505 6 1410 195 104 36 chr12 40581909 40582318 -103700171 - MSTD LTR MaLR 0 396 1 1275 223 42 72 chr12 40582545 40582931 -103699558 - MLT1A2 LTR MaLR 0 374 1 424 260 75 55 chr12 40584402 40584602 -103697887 + L2 LINE L2 3109 3312 -1 1873 247 67 49 chr12 40584843 40585458 -103697031 - MLT1E2 LTR MaLR 0 626 1 23 33 0 0 chr12 40585541 40585571 -103696918 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr12 40585930 40585966 -103696523 + AT_rich Low_complexity Low_complexity 1 36 0 1871 270 107 9 chr12 40586971 40587731 -103694758 - L1ME3A LINE L1 -31 6139 5306 1992 211 43 64 chr12 40588398 40588912 -103693577 + MLT2B3 LTR ERVL 1 413 -40 223 191 29 0 chr12 40588912 40588980 -103693509 + (TA)n Simple_repeat Simple_repeat 2 71 0 358 89 0 78 chr12 40588993 40589086 -103693403 + MLT2B3 LTR ERVL 441 554 0 932 263 93 17 chr12 40589263 40589563 -103692926 + LTR50 LTR ERVL 1 323 -472 851 259 99 14 chr12 40589605 40589957 -103692532 + LTR50 LTR ERVL 414 795 0 335 113 14 0 chr12 40591355 40591426 -103691063 + (TG)n Simple_repeat Simple_repeat 1 72 0 316 220 0 0 chr12 40591439 40591489 -103691000 - MER75 DNA T2_type -443 71 22 550 268 64 0 chr12 40591625 40591782 -103690707 + MIR SINE MIR 94 260 -2 21 0 0 0 chr12 40593160 40593181 -103689308 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr12 40593360 40593396 -103689093 + AT_rich Low_complexity Low_complexity 1 36 0 3255 118 12 16 chr12 40593396 40593912 -103688577 - MER75 DNA T2_type 0 514 1 2475 194 38 19 chr12 40594117 40594643 -103687846 - MER89 LTR ERV1 -23 536 1 391 270 171 25 chr12 40595254 40595528 -103686961 + L2 LINE L2 1938 2251 -1063 2079 189 50 23 chr12 40596599 40597039 -103685450 + MSTB2 LTR MaLR 1 452 -5 1094 67 0 0 chr12 40597207 40597341 -103685148 + AluY SINE Alu 168 301 -10 2035 141 30 49 chr12 40597869 40598239 -103684250 + THE1B LTR MaLR 2 364 0 840 269 58 10 chr12 40598316 40598628 -103683861 - MER46C DNA MER2_type 0 338 12 523 275 36 7 chr12 40598632 40598770 -103683719 - MIR SINE MIR -120 142 1 271 352 116 37 chr12 40598890 40599245 -103683244 - L3 LINE CR1 -199 1378 996 2132 185 42 5 chr12 40599257 40599663 -103682826 - MSTA LTR MaLR -7 421 1 201 394 0 0 chr12 40599671 40599742 -103682747 - L3 LINE CR1 -597 980 910 1367 204 0 29 chr12 40599759 40600039 -103682450 + L1M3e LINE L1 1 272 -6758 2259 242 82 49 chr12 40600039 40601822 -103680667 + L1M3e LINE L1 1028 2894 -4213 1857 110 4 4 chr12 40601816 40602088 -103680401 - THE1B-int LTR MaLR -1308 272 1 * 2406 79 54 23 chr12 40602088 40602441 -103680048 - THE1B LTR MaLR 0 364 1 557 156 11 6 chr12 40602607 40602707 -103679782 + MER5A DNA MER1_type 82 189 0 4623 142 3 0 chr12 40602815 40603520 -103678969 + L1P LINE L1 3 709 -5437 3443 119 2 6 chr12 40604037 40604551 -103677938 - MER75 DNA T2_type -2 512 1 327 266 180 30 chr12 40604672 40604807 -103677682 - MIR3 SINE MIR -14 194 45 6098 194 26 27 chr12 40604931 40604981 -103677508 - L1PA16 LINE L1 -9 6157 6108 1468 224 0 19 chr12 40604981 40605289 -103677200 - AluJb SINE Alu -8 304 3 6098 194 26 27 chr12 40605289 40607059 -103675430 - L1PA16 LINE L1 -58 6108 4338 1246 230 10 32 chr12 40607059 40607368 -103675121 + AluJb SINE Alu 1 302 -10 6098 194 26 27 chr12 40607368 40608010 -103674479 - L1PA16 LINE L1 -1828 4338 3697 1809 61 4 0 chr12 40608083 40608314 -103674175 - MER75 DNA T2_type -2 512 281 1268 204 54 36 chr12 40608330 40608664 -103673825 - L1PA16 LINE L1 -2486 3660 3321 232 279 25 13 chr12 40609110 40609189 -103673300 + LTR33A LTR ERVL 444 523 0 838 303 39 21 chr12 40610156 40610486 -103672003 + LTR16B LTR ERVL 125 460 -4 894 338 43 36 chr12 40610526 40611268 -103671221 + HERV16 LTR ERVL 61 834 -4162 5052 75 11 40 chr12 40611268 40611976 -103670513 + LTR12 LTR ERV1 1 688 0 894 338 43 36 chr12 40611976 40612202 -103670287 + HERV16 LTR ERVL 834 1057 -3939 272 67 0 0 chr12 40612494 40612539 -103669950 + AluSc SINE Alu 255 299 0 3170 214 124 34 chr12 40612751 40613727 -103668762 + L1M1 LINE L1 1 1064 -6145 * 7770 160 34 36 chr12 40613720 40615719 -103666770 + L1M1 LINE L1 4678 6680 -685 1038 224 28 86 chr12 40616153 40616550 -103665939 + MLT1A2 LTR MaLR 1 374 0 782 214 7 87 chr12 40616881 40617178 -103665311 + MLT1B LTR MaLR 104 386 0 551 272 5 5 chr12 40617668 40617852 -103664637 + L1MC/D LINE L1 5188 5371 -775 * 6658 91 8 0 chr12 40617848 40618771 -103663718 - L1PA7 LINE L1 -1116 5030 4101 6407 74 17 6 chr12 40618773 40619862 -103662627 + L1PA7 LINE L1 5041 6141 -13 534 77 0 0 chr12 40619866 40619944 -103662545 + L1MC/D LINE L1 5354 5431 -902 835 288 64 47 chr12 40620155 40620624 -103661865 - LTR33 LTR ERVL -3 518 42 2224 111 0 3 chr12 40620746 40621043 -103661446 + AluY SINE Alu 1 296 -15 619 190 0 11 chr12 40621269 40621448 -103661041 + GA-rich Low_complexity Low_complexity 1 177 0 27 0 0 0 chr12 40622511 40622538 -103659951 + AT_rich Low_complexity Low_complexity 1 27 0 274 344 38 75 chr12 40623147 40623333 -103659156 - MIR3 SINE MIR -14 194 16 339 25 0 0 chr12 40623780 40623820 -103658669 + (CA)n Simple_repeat Simple_repeat 2 41 0 291 210 48 0 chr12 40623820 40623882 -103658607 - HERVL68 LTR ERVL -338 2699 2635 620 226 170 26 chr12 40623955 40624185 -103658304 - HERVL68 LTR ERVL -484 2553 2291 284 285 139 32 chr12 40624700 40624858 -103657631 - MIR SINE MIR -40 222 48 229 332 35 73 chr12 40625749 40626008 -103656481 - MIR SINE MIR 0 262 14 663 244 99 23 chr12 40626147 40626368 -103656121 + L1ME1 LINE L1 36 273 -6123 1335 257 82 6 chr12 40626407 40626905 -103655584 + L1ME1 LINE L1 4707 5242 -973 595 116 0 0 chr12 40626917 40627003 -103655486 - HY3 scRNA scRNA -3 98 13 2630 231 67 38 chr12 40627042 40627981 -103654508 + L1ME1 LINE L1 5284 6231 -4 7606 23 5 0 chr12 40628006 40628875 -103653614 - L1P LINE L1 -1168 4978 4106 * 7615 32 1 0 chr12 40628874 40629958 -103652531 + L1PA3 LINE L1 5098 6182 0 21 57 0 0 chr12 40630411 40630446 -103652043 + AT_rich Low_complexity Low_complexity 1 35 0 1655 209 69 3 chr12 40631590 40631799 -103650690 - MLT1B LTR MaLR 0 390 147 1341 173 85 35 chr12 40631799 40631974 -103650515 - AluJo SINE Alu -15 297 101 441 0 0 0 chr12 40631974 40632023 -103650466 + (TG)n Simple_repeat Simple_repeat 2 50 0 1341 173 85 35 chr12 40632023 40632130 -103650359 - AluJo SINE Alu -211 101 1 1655 209 69 3 chr12 40632130 40632268 -103650221 - MLT1B LTR MaLR -243 147 20 1148 137 19 16 chr12 40632268 40632513 -103649976 + THE1C LTR MaLR 1 361 -14 372 183 15 131 chr12 40632613 40632750 -103649739 + MIR SINE MIR 126 246 -16 495 169 11 22 chr12 40634322 40634411 -103648078 + MLT1H LTR MaLR 411 498 -51 21 0 0 0 chr12 40635179 40635200 -103647289 + AT_rich Low_complexity Low_complexity 1 21 0 50 95 0 0 chr12 40635411 40635559 -103646930 + AT_rich Low_complexity Low_complexity 1 148 0 612 82 0 0 chr12 40635665 40635750 -103646739 + Alu SINE Alu 225 309 -3 233 243 95 0 chr12 40635755 40635829 -103646660 - L1MC5 LINE L1 -404 7557 7477 23 0 0 0 chr12 40635974 40635997 -103646492 + AT_rich Low_complexity Low_complexity 1 23 0 294 336 143 0 chr12 40636035 40636154 -103646335 - L2 LINE L2 0 3272 3137 360 225 12 25 chr12 40637413 40637493 -103644996 - MIR SINE MIR -107 101 23 2417 57 0 27 chr12 40638606 40638907 -103643582 - AluY SINE Alu -18 293 1 2277 89 7 0 chr12 40638921 40639213 -103643276 - AluSp SINE Alu -19 294 1 366 23 0 0 chr12 40640206 40640249 -103642240 + (CA)n Simple_repeat Simple_repeat 2 44 0 310 283 22 43 chr12 40640623 40640761 -103641728 + L2 LINE L2 417 551 -2763 486 297 40 7 chr12 40640782 40640987 -103641502 + MIR SINE MIR 2 254 -8 2632 126 3 8 chr12 40641361 40641727 -103640762 + THE1B LTR MaLR 1 364 0 362 322 89 20 chr12 40641892 40642281 -103640208 + L1ME LINE L1 16 468 -5602 10258 44 2 128 chr12 40642690 40644262 -103638227 + SVA Other Other 9 1382 -4 985 292 19 39 chr12 40644624 40645035 -103637454 + L1 LINE L1 4857 5259 -887 1656 157 87 31 chr12 40645041 40645361 -103637128 + THE1C LTR MaLR 1 365 -63 2126 97 7 4 chr12 40645361 40645640 -103636849 + AluSg1 SINE Alu 2 281 -28 1656 157 87 31 chr12 40645640 40645708 -103636781 + THE1C LTR MaLR 365 428 0 663 100 118 9 chr12 40645736 40645846 -103636643 + L1MA2 LINE L1 6178 6299 -5 22 0 0 0 chr12 40645846 40645868 -103636621 + AT_rich Low_complexity Low_complexity 1 22 0 499 174 207 0 chr12 40645872 40645993 -103636496 - MER4B LTR ERV1 -462 148 3 1870 149 3 0 chr12 40646323 40646605 -103635884 + AluSx SINE Alu 3 285 -27 30 27 0 0 chr12 40646606 40646643 -103635846 + AT_rich Low_complexity Low_complexity 1 37 0 686 316 0 0 chr12 40647249 40647423 -103635066 + MER41D LTR ERV1 384 557 0 11798 303 50 31 chr12 40648368 40650324 -103632165 + PRIMA41-int LTR ERV1 1269 3187 -4569 2375 76 0 35 chr12 40650324 40650640 -103631849 - AluY SINE Alu -6 305 1 11798 303 50 31 chr12 40650640 40651897 -103630592 + PRIMA41-int LTR ERV1 3187 4419 -3337 2713 107 5 35 chr12 40651897 40652106 -103630383 - THE1B LTR MaLR 0 364 168 1925 115 4 0 chr12 40652106 40652390 -103630099 + AluSx SINE Alu 23 307 0 2713 107 5 35 chr12 40652390 40652554 -103629935 - THE1B LTR MaLR -196 168 1 11798 303 50 31 chr12 40652554 40654119 -103628370 + PRIMA41-int LTR ERV1 4419 6138 -1618 213 196 0 0 chr12 40654427 40654483 -103628006 + G-rich Low_complexity Low_complexity 4 59 0 352 297 22 22 chr12 40757483 40757621 -103524868 + L1ME1 LINE L1 138 275 -6121 952 154 0 0 chr12 40757624 40757767 -103524722 + HERVL LTR ERVL 1501 1643 -4121 837 243 24 67 chr12 40757770 40758143 -103524346 - MER57A LTR ERV1 -1 402 67 1138 196 100 0 chr12 40758213 40758433 -103524056 + HERVL LTR ERVL 3671 3912 -1742 2947 223 44 52 chr12 40758433 40758928 -103523561 + L1ME1 LINE L1 4249 4747 -1488 2216 102 0 3 chr12 40758928 40759222 -103523267 - AluSg1 SINE Alu -16 293 1 2947 223 44 52 chr12 40759222 40760548 -103521941 + L1ME1 LINE L1 4747 6043 -192 1791 302 46 43 chr12 40760647 40761515 -103520974 + HAL1 LINE L1 14 884 -1623 278 295 64 85 chr12 40761666 40761947 -103520542 - HAL1 LINE L1 -2125 382 108 727 277 34 10 chr12 40762266 40762472 -103520017 - MIR SINE MIR -9 253 43 253 282 5 146 chr12 40762505 40762711 -103519778 - MER5B DNA MER1_type 0 178 2 219 365 156 12 chr12 40762943 40763110 -103519379 + MIR SINE MIR 28 218 -44 870 239 109 10 chr12 40763226 40763519 -103518970 - HsTC2 DNA Tc2 -30 1868 1547 210 125 14 83 chr12 40763521 40763593 -103518896 + (TTAA)n Simple_repeat Simple_repeat 2 68 0 318 313 18 0 chr12 40763703 40763815 -103518674 - HsTC2 DNA Tc2 -1781 117 4 2670 153 2 2 chr12 40765350 40765776 -103516713 - MSTC LTR MaLR -2 426 1 208 327 0 0 chr12 40765928 40765983 -103516506 - MIR SINE MIR -138 70 16 2106 105 7 7 chr12 40766035 40766351 -103516138 - AluSp SINE Alu 0 316 1 817 168 0 29 chr12 40766979 40767116 -103515373 - FLAM_C SINE Alu 0 133 1 4270 16 2 0 chr12 40767307 40767798 -103514691 - L1PA2 LINE L1 -1 6154 5663 745 238 0 18 chr12 40769298 40769466 -103513023 + MER31B LTR ERV1 1 165 -301 21425 121 11 10 chr12 40769466 40773380 -103509109 + L1PA8A LINE L1 1889 5802 -329 24 0 0 0 chr12 40773559 40773583 -103508906 + AT_rich Low_complexity Low_complexity 1 24 0 1181 298 177 33 chr12 40773999 40774673 -103507816 - L3 LINE CR1 -4 1573 803 737 271 157 34 chr12 40774693 40775106 -103507383 + LTR16B LTR ERVL 1 464 0 293 352 41 25 chr12 40775110 40775306 -103507183 + HERV16 LTR ERVL 5 203 -4793 2772 319 78 31 chr12 40775378 40776488 -103506001 + HERV16 LTR ERVL 506 1562 -3535 207 0 0 0 chr12 40776488 40776511 -103505978 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2772 319 78 31 chr12 40776511 40777893 -103504596 + HERV16 LTR ERVL 1562 3197 -1900 259 298 35 48 chr12 40777947 40778175 -103504314 + HERV16 LTR ERVL 3569 3793 -1203 1244 220 51 71 chr12 40778177 40778531 -103503958 + MLT1A1 LTR MaLR 7 353 -12 238 222 14 42 chr12 40778818 40778890 -103503599 - HAL1b LINE L1 -925 423 354 2705 26 0 0 chr12 40778899 40779205 -103503284 + AluYa5 SINE Alu 1 306 -5 21 36 0 0 chr12 40779376 40779404 -103503085 + AT_rich Low_complexity Low_complexity 1 28 0 492 341 40 14 chr12 40779948 40780171 -103502318 - MLT1J LTR MaLR -262 249 21 200 194 48 0 chr12 40781114 40781176 -103501313 + (CTATT)n Simple_repeat Simple_repeat 4 68 0 519 299 66 49 chr12 40782817 40783061 -103499428 + MIR SINE MIR 15 262 0 23 0 0 0 chr12 40784157 40784180 -103498309 + AT_rich Low_complexity Low_complexity 1 23 0 2171 91 30 10 chr12 40784354 40784652 -103497837 - AluSg SINE Alu -6 304 1 28 0 0 0 chr12 40785739 40785767 -103496722 + AT_rich Low_complexity Low_complexity 1 28 0 377 339 61 6 chr12 40786735 40786915 -103495574 - L2 LINE L2 0 3313 3124 1650 286 80 10 chr12 40786920 40787519 -103494970 + L2 LINE L2 1430 2070 -1244 1156 294 51 40 chr12 40788143 40788596 -103493893 - MLT1J LTR MaLR -35 476 19 261 221 0 39 chr12 40788707 40788784 -103493705 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 267 225 50 0 chr12 40789849 40789969 -103492520 + (TA)n Simple_repeat Simple_repeat 1 126 0 3886 189 139 22 chr12 40790900 40791886 -103490603 + L1MB1 LINE L1 4134 5234 -912 1265 171 60 12 chr12 40791987 40792239 -103490250 + L1MB1 LINE L1 5748 6011 -157 2297 109 12 9 chr12 40792241 40792580 -103489909 + THE1A LTR MaLR 1 340 -15 814 133 67 0 chr12 40792583 40792733 -103489756 + L1MB1 LINE L1 6008 6167 -1 21 36 0 0 chr12 40792733 40792761 -103489728 + AT_rich Low_complexity Low_complexity 1 28 0 351 0 0 0 chr12 40793989 40794028 -103488461 + (TG)n Simple_repeat Simple_repeat 2 40 0 802 153 107 0 chr12 40794887 40795037 -103487452 + L1M4c LINE L1 1599 1764 -4620 378 0 0 0 chr12 40795133 40795175 -103487314 + (TG)n Simple_repeat Simple_repeat 2 43 0 232 268 0 28 chr12 40795176 40795247 -103487242 + GA-rich Low_complexity Low_complexity 1 69 0 518 132 0 11 chr12 40795523 40795614 -103486875 + L1M4c LINE L1 1748 1837 -4547 225 0 0 0 chr12 40795616 40795641 -103486848 + (TTA)n Simple_repeat Simple_repeat 1 25 0 846 283 178 2 chr12 40795750 40796189 -103486300 + HAL1 LINE L1 1402 1917 -590 366 282 126 16 chr12 40796632 40796887 -103485602 + HAL1 LINE L1 2109 2391 -116 1938 163 28 93 chr12 40796986 40797382 -103485107 + L1MB7 LINE L1 5706 6126 -52 1975 133 59 31 chr12 40797382 40797736 -103484753 + THE1B LTR MaLR 1 364 0 11374 107 2 4 chr12 40797736 40799320 -103483169 + THE1B-int LTR MaLR 1 1580 0 2054 125 62 28 chr12 40799320 40799672 -103482817 + THE1B LTR MaLR 1 364 0 1938 163 28 93 chr12 40799672 40799769 -103482720 + L1MB7 LINE L1 6123 6169 -9 205 214 101 45 chr12 40800367 40800456 -103482033 - L2 LINE L2 -917 2397 2304 208 354 0 25 chr12 40800753 40800832 -103481657 - MIR SINE MIR -67 141 65 262 301 97 19 chr12 40800990 40801093 -103481396 + MIR3 SINE MIR 83 193 -15 287 279 115 71 chr12 40802592 40802775 -103479714 - L2 LINE L2 0 3272 3082 341 322 147 23 chr12 40802811 40802988 -103479501 + MIR SINE MIR 39 237 -25 216 97 0 0 chr12 40803031 40803062 -103479427 + (TC)n Simple_repeat Simple_repeat 1 31 0 236 342 60 0 chr12 40803757 40803874 -103478615 + L2 LINE L2 3169 3292 -21 202 351 0 0 chr12 40804033 40804090 -103478399 + L2 LINE L2 3253 3309 -4 285 298 274 33 chr12 40804724 40805053 -103477436 - L2 LINE L2 0 3313 2906 224 211 55 9 chr12 40805539 40805648 -103476841 + (TA)n Simple_repeat Simple_repeat 2 115 0 333 47 0 0 chr12 40805698 40805741 -103476748 + (CA)n Simple_repeat Simple_repeat 2 44 0 298 310 116 103 chr12 40805821 40806150 -103476339 + L2 LINE L2 2936 3268 -4 225 345 103 14 chr12 40807557 40807702 -103474787 - MIR SINE MIR 0 262 105 194 240 0 40 chr12 40807707 40807757 -103474732 + MIR SINE MIR 197 244 -18 681 231 46 136 chr12 40808072 40808461 -103474028 + L2 LINE L2 2440 2793 -521 707 246 52 129 chr12 40808461 40808966 -103473523 - MLT1H LTR MaLR 0 549 84 376 299 138 51 chr12 40808998 40809353 -103473136 + L2 LINE L2 2804 3189 -124 1668 130 0 0 chr12 40809374 40809621 -103472868 - L1PA8A LINE L1 -4 6127 5881 57 28 0 0 chr12 40809793 40809864 -103472625 + AT_rich Low_complexity Low_complexity 1 71 0 335 306 48 93 chr12 40809875 40810248 -103472241 + L2 LINE L2 2698 3050 -263 25 51 0 0 chr12 40810278 40810317 -103472172 + AT_rich Low_complexity Low_complexity 1 39 0 211 296 136 0 chr12 40811234 40811315 -103471174 + L2 LINE L2 3168 3259 -13 2111 97 0 24 chr12 40812349 40812661 -103469828 + AluSg SINE Alu 1 305 0 440 324 74 0 chr12 40813841 40814017 -103468472 + MIR SINE MIR 66 254 -8 551 264 75 51 chr12 40814459 40814754 -103467735 - L1ME LINE L1 -335 5786 5485 249 342 158 43 chr12 40814761 40815039 -103467450 - L2 LINE L2 -2 3311 3002 286 247 12 0 chr12 40815642 40815723 -103466766 - HAL1 LINE L1 -867 1640 1559 185 314 121 48 chr12 40815766 40815973 -103466516 - MIR SINE MIR -1 261 40 226 304 80 24 chr12 40816170 40816459 -103466030 - L1MEd LINE L1 -4894 1225 921 1177 149 62 12 chr12 40816501 40816742 -103465747 - L1MD3 LINE L1 0 7995 7743 399 21 0 0 chr12 40817576 40817624 -103464865 + (TG)n Simple_repeat Simple_repeat 2 49 0 219 290 0 0 chr12 40818113 40818175 -103464314 - L2 LINE L2 0 3313 3252 257 140 80 0 chr12 40818478 40818528 -103463961 - MADE1 DNA Mariner -26 54 1 21 0 0 0 chr12 40818627 40818648 -103463841 + AT_rich Low_complexity Low_complexity 1 21 0 777 163 31 0 chr12 40819526 40819655 -103462834 + FRAM SINE Alu 28 160 -16 4643 153 9 18 chr12 40819784 40821192 -103461297 - L1PA16 LINE L1 -1 6165 4779 229 250 19 0 chr12 40821213 40821265 -103461224 - MER66A LTR ERV1 -140 338 286 320 114 0 0 chr12 40821265 40821309 -103461180 - L1PA16 LINE L1 -1373 4773 4730 300 265 20 41 chr12 40822224 40822322 -103460167 + HERV16 LTR ERVL 4296 4391 -605 1136 282 81 18 chr12 40823004 40823387 -103459102 + LTR16B LTR ERVL 15 421 -43 377 182 0 0 chr12 40823420 40823486 -103459003 - MADE1 DNA Mariner -14 66 1 290 350 95 20 chr12 40823620 40823820 -103458669 - L3 LINE CR1 -1023 554 340 279 0 0 0 chr12 40823882 40823913 -103458576 + (TA)n Simple_repeat Simple_repeat 2 32 0 29 0 0 0 chr12 40824144 40824173 -103458316 + AT_rich Low_complexity Low_complexity 1 29 0 1398 301 42 4 chr12 40824174 40824746 -103457743 - L1MC4a LINE L1 -545 5638 5269 324 364 98 16 chr12 40824810 40825186 -103457303 - L1MC4a LINE L1 -982 5164 4758 17227 164 37 29 chr12 40825209 40829146 -103453343 + L1MA1 LINE L1 16 3994 -3571 2266 115 0 0 chr12 40829146 40829451 -103453038 + AluSg SINE Alu 4 308 -2 17227 164 37 29 chr12 40829451 40829632 -103452857 + L1MA1 LINE L1 3994 4172 -3393 2457 18 0 3 chr12 40829635 40829920 -103452569 - L1PA3 LINE L1 0 6155 5872 5609 16 5 0 chr12 40829943 40830710 -103451779 + L1PA3 LINE L1 5123 5898 -257 12308 156 32 9 chr12 40830718 40834189 -103448300 + L1MA1 LINE L1 4177 7721 0 366 291 106 57 chr12 40834237 40834749 -103447740 - L1M4 LINE L1 -1438 4708 4172 21 0 0 0 chr12 40834909 40834930 -103447559 + AT_rich Low_complexity Low_complexity 1 21 0 2082 102 0 11 chr12 40835029 40835360 -103447129 - AluSc SINE Alu 0 328 1 471 244 116 86 chr12 40835803 40836339 -103446150 - L1M4 LINE L1 -2919 3227 2676 314 331 105 6 chr12 40836574 40836755 -103445734 - L1M4 LINE L1 -3613 2533 2335 6214 88 8 4 chr12 40836803 40837792 -103444697 - L1PA10 LINE L1 -2 6166 5169 529 140 0 0 chr12 40837965 40838058 -103444431 - L1MB5 LINE L1 -1 6173 6081 907 20 0 0 chr12 40838263 40838365 -103444124 - AluY SINE Alu -208 102 1 4926 234 98 19 chr12 40838366 40840178 -103442311 + L1M4c LINE L1 1925 3593 -2789 1655 186 99 14 chr12 40840178 40840543 -103441946 - MSTD LTR MaLR 0 396 1 4926 234 98 19 chr12 40840543 40841100 -103441389 + L1M4c LINE L1 3593 4510 -1872 2117 136 0 13 chr12 40841100 40841416 -103441073 + AluSx SINE Alu 1 312 0 4926 234 98 19 chr12 40841416 40841498 -103440991 + L1M4c LINE L1 4510 4584 -1798 426 194 70 23 chr12 40841484 40841613 -103440876 + L1M4c LINE L1 2759 2893 -3489 * 416 198 9 0 chr12 40841614 40841720 -103440769 + L1M4c LINE L1 4581 4687 -1695 2714 204 42 4 chr12 40841720 40841800 -103440689 - MER44D DNA MER2_type -1882 605 529 288 0 0 0 chr12 40841800 40841832 -103440657 + (CA)n Simple_repeat Simple_repeat 2 33 0 2714 204 42 4 chr12 40841832 40842279 -103440210 - MER44D DNA MER2_type -1958 529 3 738 169 12 36 chr12 40842280 40842446 -103440043 + L1M4c LINE L1 4685 4846 -1536 2012 181 5 10 chr12 40842610 40843018 -103439471 - L1PA13 LINE L1 -1316 4830 4425 6060 102 13 11 chr12 40843022 40844356 -103438133 + L1PA13 LINE L1 4827 6163 0 2223 116 6 0 chr12 40844364 40844675 -103437814 + AluSq SINE Alu 1 313 0 471 293 39 31 chr12 40844675 40845013 -103437476 + L1ME LINE L1 1012 1391 -4981 543 275 77 91 chr12 40845074 40845503 -103436986 - L1MEd LINE L1 -1133 1357 922 266 143 0 0 chr12 40846532 40846574 -103435915 - MADE1 DNA Mariner -34 46 5 1929 166 7 0 chr12 40846709 40847004 -103435485 + AluSx SINE Alu 1 297 -15 201 39 0 0 chr12 40847006 40847032 -103435457 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2362 179 34 2 chr12 40847657 40848070 -103434419 + MSTB LTR MaLR 1 426 0 1887 131 40 37 chr12 40848785 40849159 -103433330 + THE1C LTR MaLR 1 375 0 1972 180 30 93 chr12 40849323 40849575 -103432914 - MLT1D LTR MaLR 0 505 303 1738 180 0 44 chr12 40849575 40849712 -103432777 + AluJb SINE Alu 1 143 -169 2004 142 7 3 chr12 40849712 40850022 -103432467 + AluSx SINE Alu 1 311 -1 1738 180 0 44 chr12 40850022 40850201 -103432288 + AluJb SINE Alu 143 303 -9 1972 180 30 93 chr12 40850201 40850487 -103432002 - MLT1D LTR MaLR -202 303 1 460 26 0 117 chr12 40850867 40850944 -103431545 - L1PA4 LINE L1 -3 6152 6085 746 93 9 0 chr12 40850944 40851052 -103431437 + L1PA4 LINE L1 5979 6087 -68 969 227 86 36 chr12 40851395 40851744 -103430745 + MSTD LTR MaLR 1 396 0 248 280 120 16 chr12 40852171 40852296 -103430193 - MLT1J LTR MaLR -44 467 330 554 299 6 19 chr12 40852366 40852523 -103429966 - MLT1J LTR MaLR -325 186 32 246 303 56 107 chr12 40852534 40852712 -103429777 - MER5B DNA MER1_type -9 169 1 410 202 168 42 chr12 40852973 40853092 -103429397 - MSTD LTR MaLR -86 310 177 1772 159 63 29 chr12 40854566 40854944 -103427545 + L1MA10 LINE L1 5938 6328 -6 23 33 0 0 chr12 40855411 40855441 -103427048 + AT_rich Low_complexity Low_complexity 1 30 0 383 253 123 7 chr12 40855676 40855822 -103426667 + L1MC/D LINE L1 5625 5787 -2021 7570 26 6 1 chr12 40856013 40857659 -103424830 + L1PA4 LINE L1 4504 6153 -2 23 0 0 0 chr12 40857973 40857996 -103424493 + AT_rich Low_complexity Low_complexity 1 23 0 269 375 0 0 chr12 40858196 40858284 -103424205 - MIR3 SINE MIR -7 201 114 903 280 40 20 chr12 40858564 40858814 -103423675 + MIR SINE MIR 8 262 0 257 367 56 10 chr12 40858884 40859080 -103423409 + L2 LINE L2 2600 2804 -510 28 29 0 0 chr12 40859304 40859339 -103423150 + AT_rich Low_complexity Low_complexity 1 35 0 225 313 40 30 chr12 40859491 40859590 -103422899 + L2 LINE L2 2244 2343 -971 337 342 77 78 chr12 40859618 40860383 -103422106 + L2 LINE L2 2420 3191 -81 3151 21 0 11 chr12 40860898 40861263 -103421226 - L1PA3 LINE L1 -1489 4657 4295 7770 20 0 1 chr12 40861263 40862778 -103419711 + L1PA3 LINE L1 4639 6155 0 3151 21 0 11 chr12 40862778 40862793 -103419696 - L1P LINE L1 -1851 4295 4281 413 288 7 41 chr12 40863519 40863665 -103418824 + L2 LINE L2 3172 3312 -1 2290 156 22 0 chr12 40864031 40864396 -103418093 - MER57A LTR ERV1 -30 373 1 985 109 0 0 chr12 40864396 40864533 -103417956 - MER57A-int LTR ERV1 0 7537 7401 2857 144 20 7 chr12 40864538 40864995 -103417494 + MER57-int LTR ERV1 6684 7146 -391 697 87 39 39 chr12 40864997 40865124 -103417365 + LTR54B LTR ERV1 5 131 -367 566 144 0 0 chr12 40865125 40865215 -103417274 + MER57-int LTR ERV1 7284 7373 -164 23 33 0 0 chr12 40865401 40865431 -103417058 + AT_rich Low_complexity Low_complexity 1 30 0 309 68 0 0 chr12 40866088 40866132 -103416357 + (TG)n Simple_repeat Simple_repeat 2 45 0 243 341 88 43 chr12 40866218 40866546 -103415943 - L2 LINE L2 -537 2777 2435 207 356 34 41 chr12 40867714 40867860 -103414629 - L2 LINE L2 -455 2859 2715 192 152 0 0 chr12 40868066 40868099 -103414390 + GA-rich Low_complexity Low_complexity 4 36 0 195 167 0 0 chr12 40868670 40868712 -103413777 + T-rich Low_complexity Low_complexity 3 44 0 511 170 9 18 chr12 40869340 40869452 -103413037 - L1MB8 LINE L1 -13 6165 6055 24 53 0 0 chr12 40869824 40869862 -103412627 + AT_rich Low_complexity Low_complexity 1 38 0 327 349 42 11 chr12 40870187 40870376 -103412113 + L2 LINE L2 2827 3021 -292 1428 169 51 79 chr12 40870414 40870629 -103411860 - THE1C LTR MaLR 0 375 172 2341 88 0 10 chr12 40870629 40870925 -103411564 - AluY SINE Alu -17 294 2 1428 169 51 79 chr12 40870925 40871064 -103411425 - THE1C LTR MaLR -203 172 31 3313 134 43 8 chr12 40871064 40871571 -103410918 + LTR17 LTR ERV1 256 780 0 14456 87 21 11 chr12 40871573 40873560 -103408929 + HERV17 LTR ERV1 1 2007 -6619 8032 61 1 3 chr12 40873552 40874561 -103407928 + HERV17 LTR ERV1 2430 3436 -5190 * 5784 87 4 3 chr12 40874662 40875434 -103407055 + HERV17 LTR ERV1 2982 3754 -4872 5052 44 8 0 chr12 40875413 40876026 -103406463 + HERV17 LTR ERV1 5405 6022 -2604 * 276 77 0 0 chr12 40876016 40876055 -103406434 + HERV17 LTR ERV1 7510 7548 -1078 * 2339 58 0 10 chr12 40876045 40876340 -103406149 + HERV17 LTR ERV1 8335 8626 0 2350 91 0 12 chr12 40876340 40876670 -103405819 + LTR17 LTR ERV1 1 326 -454 247 118 0 0 chr12 40876685 40876719 -103405770 - THE1C LTR MaLR -321 34 1 2540 111 3 22 chr12 40876878 40877249 -103405240 + THE1B LTR MaLR 1 364 0 249 310 39 70 chr12 40877269 40877398 -103405091 - L3 LINE CR1 -79 1498 1374 428 63 0 4 chr12 40877400 40877623 -103404866 + AluY SINE Alu 1 295 -16 198 0 0 0 chr12 40877623 40877645 -103404844 + (TA)n Simple_repeat Simple_repeat 2 23 0 206 313 100 12 chr12 40877645 40877725 -103404764 - L3 LINE CR1 -203 1374 1288 1247 119 10 15 chr12 40877861 40878062 -103404427 - L1PA16 LINE L1 -3 6163 5964 1475 185 45 31 chr12 40878551 40878843 -103403646 + AluJb SINE Alu 1 296 -16 355 303 76 15 chr12 40878906 40879038 -103403451 - L2 LINE L2 0 3272 3133 359 119 0 0 chr12 40879089 40879148 -103403341 + MER53 DNA DNA 128 186 -3 1420 273 57 8 chr12 40879451 40879960 -103402529 + L1ME3A LINE L1 5633 6166 -4 427 271 107 62 chr12 40880419 40880710 -103401779 + LTR16C LTR ERVL 187 490 -1 201 39 0 0 chr12 40881965 40881991 -103400498 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 356 320 48 84 chr12 40882378 40882712 -103399777 - L2 LINE L2 0 3272 2951 235 182 30 61 chr12 40886205 40886271 -103396218 + MER5B DNA MER1_type 1 64 -114 186 260 0 20 chr12 40888755 40888805 -103393684 + L3 LINE CR1 1216 1264 -313 2297 99 3 0 chr12 40889361 40889663 -103392826 + AluSx SINE Alu 1 303 -9 204 207 121 0 chr12 40889856 40889914 -103392575 + MIR SINE MIR 102 166 -96 436 92 0 103 chr12 40890234 40890321 -103392168 + MADE1 DNA Mariner 1 78 -2 229 211 0 0 chr12 40891208 40891260 -103391229 + A-rich Low_complexity Low_complexity 1 52 0 464 284 17 9 chr12 40891676 40891792 -103390697 + MIR SINE MIR 25 141 -121 391 214 45 0 chr12 40891796 40891885 -103390604 + L1 LINE L1 3525 3617 -2529 322 298 69 0 chr12 40891885 40892016 -103390473 + BaEV-int LTR ERV1 150 289 -6360 21197 159 152 18 chr12 40892037 40894912 -103387577 + L1MA5 LINE L1 11 2501 -3799 8183 56 18 0 chr12 40894912 40896731 -103385758 + L1PA6 LINE L1 4307 6146 -8 21197 159 152 18 chr12 40896731 40899393 -103383096 + L1MA5 LINE L1 2501 6300 0 218 145 145 29 chr12 40899394 40899463 -103383026 + MIR SINE MIR 144 220 -42 418 284 128 25 chr12 40901111 40901315 -103381174 - MIR SINE MIR -1 261 37 323 306 42 76 chr12 40901392 40901536 -103380953 + MIR SINE MIR 1 139 -123 514 281 127 5 chr12 40901897 40902118 -103380371 + MIR SINE MIR 1 248 -14 2235 102 0 3 chr12 40902918 40903222 -103379267 - AluSq SINE Alu -8 305 3 2221 83 7 17 chr12 40903895 40904197 -103378292 + AluY SINE Alu 3 301 -10 23 0 0 0 chr12 40904374 40904397 -103378092 + AT_rich Low_complexity Low_complexity 1 23 0 3538 112 54 4 chr12 40904675 40905227 -103377262 + LTR19B LTR ERV1 1 580 0 231 114 0 0 chr12 40906395 40906430 -103376059 + (CA)n Simple_repeat Simple_repeat 1 35 0 1906 105 60 78 chr12 40908072 40908454 -103374035 + THE1C LTR MaLR 1 375 0 1829 156 16 10 chr12 40910963 40911270 -103371219 + AluJo SINE Alu 1 309 -3 195 323 46 0 chr12 40911995 40912060 -103370429 - L2 LINE L2 0 3313 3246 24 32 0 0 chr12 40912359 40912390 -103370099 + AT_rich Low_complexity Low_complexity 1 31 0 245 380 40 0 chr12 40912988 40913138 -103369351 + MIR SINE MIR 58 213 -49 512 176 37 0 chr12 40913183 40913291 -103369198 + L1MB5 LINE L1 6055 6166 -8 33 25 0 0 chr12 40914925 40914965 -103367524 + AT_rich Low_complexity Low_complexity 1 40 0 371 290 213 7 chr12 40915685 40915840 -103366649 + MIR SINE MIR 32 218 -44 1351 168 91 64 chr12 40916693 40916991 -103365498 + MLT2C1 LTR ERVL 92 397 0 1917 144 3 0 chr12 40917065 40917357 -103365132 + AluSx SINE Alu 1 293 -19 2042 111 0 0 chr12 40917402 40917673 -103364816 + AluSx SINE Alu 1 271 -41 23 33 0 0 chr12 40918455 40918485 -103364004 + AT_rich Low_complexity Low_complexity 1 30 0 237 363 109 15 chr12 40919014 40919281 -103363208 + L3 LINE CR1 160 451 -1126 357 295 39 26 chr12 40919361 40919517 -103362972 - MER112 DNA MER1_type -9 251 94 23 33 0 0 chr12 40919541 40919571 -103362918 + AT_rich Low_complexity Low_complexity 1 30 0 437 268 58 0 chr12 40921099 40921237 -103361252 + L1ME4a LINE L1 5974 6119 -2 2412 195 92 31 chr12 40921627 40922150 -103360339 - MLT1F1 LTR MaLR 0 567 13 624 268 108 17 chr12 40922244 40922475 -103360014 - MIR SINE MIR -4 258 7 2078 138 0 3 chr12 40922497 40922809 -103359680 - AluSx SINE Alu -1 311 1 2782 104 65 5 chr12 40923629 40923726 -103358763 + L1PB1 LINE L1 5682 5772 -379 216 0 0 0 chr12 40923726 40923750 -103358739 + (TG)n Simple_repeat Simple_repeat 2 25 0 2782 104 65 5 chr12 40923750 40924095 -103358394 + L1PB1 LINE L1 5772 6151 0 191 371 0 0 chr12 40924653 40924715 -103357774 - L2 LINE L2 -1 3271 3210 316 266 47 148 chr12 40926316 40926572 -103355917 + MIR SINE MIR 14 243 -19 1092 212 180 6 chr12 40926780 40927091 -103355398 - MLT1A1 LTR MaLR 0 365 1 1984 151 10 0 chr12 40927138 40927443 -103355046 + AluSx SINE Alu 2 309 -3 827 181 107 23 chr12 40927483 40927699 -103354790 - MER46A DNA MER2_type 0 236 3 936 290 22 74 chr12 40927883 40928248 -103354241 + MLT1H1 LTR MaLR 3 348 -207 661 306 29 15 chr12 40928350 40928556 -103353933 + MLT1H1 LTR MaLR 382 590 0 2521 205 12 2 chr12 40930193 40930700 -103351789 + MER67D LTR ERV1 3 514 0 1693 148 4 11 chr12 40930800 40931100 -103351389 + AluJb SINE Alu 16 313 0 3740 193 44 53 chr12 40931826 40931891 -103350598 - L1MB8 LINE L1 -1 6177 6113 1857 139 0 14 chr12 40931891 40932202 -103350287 + AluJb SINE Alu 1 307 0 3740 193 44 53 chr12 40932202 40932747 -103349742 - L1MB8 LINE L1 -65 6113 5564 2253 167 65 2 chr12 40932747 40933148 -103349341 + MSTB LTR MaLR 1 426 0 3740 193 44 53 chr12 40933148 40934274 -103348215 - L1MB8 LINE L1 -614 5564 4465 312 258 11 0 chr12 40934582 40934671 -103347818 - L1MC4a LINE L1 -1907 5901 5812 278 315 90 40 chr12 40934716 40934916 -103347573 - L1MC4a LINE L1 -1979 5829 5620 * 2582 243 135 30 chr12 40934915 40935362 -103347127 - L1MB8 LINE L1 -1716 4430 4032 2002 104 45 3 chr12 40935362 40935650 -103346839 - AluSg SINE Alu -10 300 1 2582 243 135 30 chr12 40935650 40935782 -103346707 - L1MB8 LINE L1 -2114 4032 3915 2726 99 0 3 chr12 40935782 40936147 -103346342 + THE1B LTR MaLR 1 364 0 2582 243 135 30 chr12 40936147 40936475 -103346014 - L1MB8 LINE L1 -2231 3915 3426 2052 130 7 7 chr12 40936597 40936919 -103345570 - AluSx SINE Alu 0 312 1 341 354 66 22 chr12 40937013 40937194 -103345295 + MIR3 SINE MIR 17 205 -3 22 0 0 0 chr12 40937515 40937537 -103344952 + AT_rich Low_complexity Low_complexity 1 22 0 2076 213 32 4 chr12 40938525 40939028 -103343461 + L1 LINE L1 3932 4448 -1698 2050 159 19 8 chr12 40939029 40939399 -103343090 + L1PA16 LINE L1 5791 6164 -2 288 111 0 0 chr12 40939478 40939523 -103342966 + (TG)n Simple_repeat Simple_repeat 2 46 0 1565 181 36 0 chr12 40939576 40939853 -103342636 - MER47B DNA MER2_type -1 417 131 336 48 0 0 chr12 40939947 40939989 -103342500 + (TA)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr12 40940229 40940250 -103342239 + AT_rich Low_complexity Low_complexity 1 21 0 222 293 123 19 chr12 40940836 40940942 -103341547 + MIR3 SINE MIR 2 118 -90 227 163 47 47 chr12 40941002 40941088 -103341401 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 258 347 90 0 chr12 40941096 40941240 -103341249 - MIR SINE MIR -57 205 49 22 80 0 0 chr12 40941665 40941715 -103340774 + AT_rich Low_complexity Low_complexity 1 50 0 1512 208 3 7 chr12 40942161 40942459 -103340030 + AluJo SINE Alu 4 300 -12 236 137 20 0 chr12 40942584 40942635 -103339854 + GA-rich Low_complexity Low_complexity 4 55 0 298 277 40 20 chr12 40942992 40943093 -103339396 - L2 LINE L2 -9 3304 3202 190 283 192 10 chr12 40944596 40944695 -103337794 + MIR SINE MIR 67 183 -79 293 311 142 23 chr12 40945492 40945711 -103336778 + MIR SINE MIR 9 253 -9 595 272 31 0 chr12 40945848 40946010 -103336479 + MER97c DNA MER1_type? 2 168 -922 2337 86 0 0 chr12 40946587 40946889 -103335600 - AluSq SINE Alu -11 302 1 1477 187 10 33 chr12 40947326 40947631 -103334858 - AluJo SINE Alu -12 300 3 358 270 251 18 chr12 40948121 40948284 -103334205 - MIR SINE MIR -58 204 4 22 0 0 0 chr12 40948825 40948847 -103333642 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 40949504 40949535 -103332954 + AT_rich Low_complexity Low_complexity 1 31 0 6771 174 12 7 chr12 40950592 40952550 -103329939 + L1PB2 LINE L1 3816 5788 -363 270 0 0 0 chr12 40952550 40952580 -103329909 + (TA)n Simple_repeat Simple_repeat 1 30 0 6771 174 12 7 chr12 40952580 40952941 -103329548 + L1PB2 LINE L1 5788 6146 -5 288 308 0 19 chr12 40953746 40953853 -103328636 + L1ME2 LINE L1 5574 5678 -2130 335 269 75 55 chr12 40953866 40954067 -103328422 + L1ME2 LINE L1 5674 5878 -286 1770 128 80 3 chr12 40954442 40954730 -103327759 + AluSx SINE Alu 1 310 -2 617 71 24 0 chr12 40955115 40955199 -103327290 - AluY SINE Alu -19 292 207 1354 213 23 46 chr12 40955793 40956183 -103326306 + MER52A LTR ERV1 1 381 -1374 4260 227 62 8 chr12 40956208 40957264 -103325225 + MER52A LTR ERV1 644 1755 0 2048 124 26 59 chr12 40957868 40958256 -103324233 + THE1C LTR MaLR 1 375 0 21 57 0 0 chr12 40959924 40959959 -103322530 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 40960793 40960814 -103321675 + AT_rich Low_complexity Low_complexity 1 21 0 1015 151 4 3 chr12 40961005 40961266 -103321223 - MER1B DNA MER1_type 0 339 1 4617 234 78 58 chr12 40962170 40962483 -103320006 + L1M4 LINE L1 14 319 -6223 785 127 0 0 chr12 40962483 40962609 -103319880 + L1MA6 LINE L1 6175 6300 0 4617 234 78 58 chr12 40962609 40963848 -103318641 + L1M4 LINE L1 319 1597 -4945 318 277 0 12 chr12 40964575 40964658 -103317831 + L2 LINE L2 3191 3272 0 204 224 20 0 chr12 40964844 40964893 -103317596 + L2 LINE L2 3261 3310 -3 30 45 0 0 chr12 40965580 40965624 -103316865 + AT_rich Low_complexity Low_complexity 1 44 0 29 0 0 0 chr12 40965855 40965884 -103316605 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr12 40968666 40968695 -103313794 + AT_rich Low_complexity Low_complexity 1 29 0 182 288 55 14 chr12 40969721 40969794 -103312695 + MIR SINE MIR 75 150 -112 21 36 0 0 chr12 40970996 40971024 -103311465 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr12 40971269 40971314 -103311175 + AT_rich Low_complexity Low_complexity 1 45 0 194 91 30 0 chr12 40971332 40971365 -103311124 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr12 40971424 40971446 -103311043 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr12 40971633 40971673 -103310816 + AT_rich Low_complexity Low_complexity 1 40 0 1917 158 7 0 chr12 40973923 40974233 -103308256 - AluJb SINE Alu 0 312 1 7173 33 10 0 chr12 40975229 40976101 -103306388 - L1PA5 LINE L1 -1703 4443 3563 7588 40 0 7 chr12 40976101 40977795 -103304694 + L1PA5 LINE L1 4439 6136 -18 6582 42 0 6 chr12 40976992 40977795 -103304694 + L1PA5 LINE L1 5339 6175 0 352 0 0 0 chr12 40977795 40977834 -103304655 + (TAAA)n Simple_repeat Simple_repeat 4 72 0 188 382 0 0 chr12 40980596 40980651 -103301838 + L2 LINE L2 3209 3263 -9 1734 151 11 7 chr12 40980675 40980959 -103301530 - AluJo SINE Alu -23 289 5 281 279 124 56 chr12 40981002 40981163 -103301326 + MER5A DNA MER1_type 18 189 0 834 184 159 18 chr12 40982748 40983031 -103299458 + MER33 DNA MER1_type 1 323 -1 2198 106 7 0 chr12 40983128 40983429 -103299060 - AluSx SINE Alu -6 306 4 637 252 122 40 chr12 40983441 40983619 -103298870 - L1ME LINE L1 -305 5816 5654 1999 60 0 12 chr12 40983619 40983870 -103298619 - AluY SINE Alu -9 302 55 637 252 122 40 chr12 40983870 40984020 -103298469 - L1ME LINE L1 -467 5654 5461 2259 109 19 30 chr12 40984122 40984490 -103297999 + THE1B LTR MaLR 1 364 0 10639 100 40 2 chr12 40984491 40986012 -103296477 + THE1B-int LTR MaLR 2 1580 0 2131 113 51 25 chr12 40986012 40986367 -103296122 + THE1B LTR MaLR 1 364 0 329 95 0 0 chr12 40986373 40986415 -103296074 + THE1A LTR MaLR 312 353 -2 25 0 0 0 chr12 40986815 40986840 -103295649 + AT_rich Low_complexity Low_complexity 1 25 0 27 0 0 0 chr12 40987950 40987977 -103294512 + AT_rich Low_complexity Low_complexity 1 27 0 1986 138 0 13 chr12 40988291 40988589 -103293900 + AluSx SINE Alu 1 294 -18 1836 144 44 9 chr12 40988773 40989093 -103293396 + MER44D DNA MER2_type 9 609 0 26 50 0 0 chr12 40989540 40989580 -103292909 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr12 40989663 40989684 -103292805 + AT_rich Low_complexity Low_complexity 1 21 0 2677 17 0 0 chr12 40990880 40991180 -103291309 + AluYa5 SINE Alu 1 300 -11 1187 179 0 14 chr12 40991474 40991692 -103290797 - AluJo SINE Alu -12 300 86 1362 188 46 10 chr12 40991924 40992227 -103290262 + MER33 DNA MER1_type 10 323 -1 29 78 0 0 chr12 40992574 40992638 -103289851 + AT_rich Low_complexity Low_complexity 1 64 0 198 0 0 0 chr12 40993269 40993291 -103289198 + (TC)n Simple_repeat Simple_repeat 2 23 0 776 276 79 9 chr12 40993633 40993861 -103288628 + MIR SINE MIR 6 249 -13 1584 90 34 0 chr12 40994140 40994374 -103288115 + MER75B DNA T2_type 2 243 0 195 129 0 0 chr12 40995555 40995586 -103286903 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 783 242 11 22 chr12 40996325 40996507 -103285982 - MER5A DNA MER1_type 0 189 10 21 0 0 0 chr12 40997058 40997079 -103285410 + AT_rich Low_complexity Low_complexity 1 21 0 1281 269 120 62 chr12 40997616 40997974 -103284515 - L2 LINE L2 -1373 1941 1605 1993 128 13 0 chr12 40997974 40998278 -103284211 - AluSg SINE Alu -2 308 1 1281 269 120 62 chr12 40998278 40998644 -103283845 - L2 LINE L2 -1709 1605 1175 2727 23 0 0 chr12 40999457 40999767 -103282722 + AluYa5 SINE Alu 1 310 -1 294 73 0 0 chr12 40999984 41000025 -103282464 + (GA)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr12 41000413 41000436 -103282053 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr12 41000681 41000706 -103281783 + AT_rich Low_complexity Low_complexity 1 25 0 2048 130 3 0 chr12 41000977 41001277 -103281212 - AluSq SINE Alu -10 303 3 933 147 7 0 chr12 41001521 41001664 -103280825 + AluSq/x SINE Alu 3 146 -167 202 353 32 39 chr12 41002908 41003064 -103279425 + L2 LINE L2 2614 2768 -546 351 234 113 4 chr12 41003444 41003591 -103278898 + MIR SINE MIR 3 170 -62 235 316 77 39 chr12 41003951 41004031 -103278458 + MIR SINE MIR 32 107 -155 225 0 0 0 chr12 41004031 41004056 -103278433 + (TTAAA)n Simple_repeat Simple_repeat 1 25 0 649 56 0 11 chr12 41004056 41004140 -103278349 - L1MA1 LINE L1 -5 6297 6215 235 316 77 39 chr12 41004140 41004218 -103278271 + MIR SINE MIR 106 192 -70 510 225 182 0 chr12 41004262 41004449 -103278040 - MIR SINE MIR -5 257 37 5447 119 2 1 chr12 41006358 41007155 -103275334 - L1PA15 LINE L1 -3 6162 5365 1968 80 50 47 chr12 41007161 41007460 -103275029 - AluSg SINE Alu -10 300 1 21 36 0 0 chr12 41007555 41007583 -103274906 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr12 41007615 41007645 -103274844 + AT_rich Low_complexity Low_complexity 1 30 0 4834 82 4 30 chr12 41010268 41011002 -103271487 + L1P LINE L1 62 776 -5370 246 56 0 0 chr12 41011402 41011438 -103271051 - L1M LINE L1 -879 5289 5254 * 1077 165 85 0 chr12 41011411 41011454 -103271035 - L1 LINE L1 -866 5280 5242 2025 195 62 14 chr12 41011454 41011890 -103270599 - MSTB2 LTR MaLR 0 457 1 1077 165 85 0 chr12 41011890 41012070 -103270419 - L1 LINE L1 -904 5242 5038 21 0 0 0 chr12 41012230 41012251 -103270238 + AT_rich Low_complexity Low_complexity 1 21 0 1470 200 0 23 chr12 41012310 41012610 -103269879 - AluJo SINE Alu -19 293 1 943 304 110 42 chr12 41012903 41013710 -103268779 - L2 LINE L2 -191 3081 2220 204 40 0 0 chr12 41013717 41013742 -103268747 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 208 282 103 68 chr12 41014603 41014720 -103267769 + L2 LINE L2 3152 3272 0 1940 92 3 31 chr12 41014977 41015271 -103267218 + AluY SINE Alu 18 303 -8 294 73 0 0 chr12 41015494 41015535 -103266954 + (GA)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr12 41015923 41015946 -103266543 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr12 41016191 41016216 -103266273 + AT_rich Low_complexity Low_complexity 1 25 0 303 331 16 8 chr12 41016338 41016462 -103266027 + HAL1b LINE L1 1174 1298 -50 2279 86 7 3 chr12 41016487 41016789 -103265700 - AluSq SINE Alu -10 303 1 585 314 54 16 chr12 41017431 41017673 -103264816 - MIR SINE MIR 0 262 12 1962 89 3 31 chr12 41019148 41019441 -103263048 - AluY SINE Alu -9 302 18 208 282 103 68 chr12 41019698 41019815 -103262674 - L2 LINE L2 0 3272 3152 204 40 0 0 chr12 41020676 41020701 -103261788 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 931 304 110 42 chr12 41020708 41021515 -103260974 + L2 LINE L2 2220 3081 -191 1464 199 0 27 chr12 41021808 41022109 -103260380 + AluJo SINE Alu 1 293 -19 21 0 0 0 chr12 41022168 41022189 -103260300 + AT_rich Low_complexity Low_complexity 1 21 0 4849 159 31 76 chr12 41022349 41022529 -103259960 + L1MA10 LINE L1 5038 5225 -1109 2025 195 62 14 chr12 41022529 41022965 -103259524 + MSTB2 LTR MaLR 1 457 0 4849 159 31 76 chr12 41022965 41023561 -103258928 + L1MA10 LINE L1 5225 5751 -583 189 0 0 0 chr12 41023561 41023582 -103258907 + (CA)n Simple_repeat Simple_repeat 2 22 0 4849 159 31 76 chr12 41023582 41024141 -103258348 + L1MA10 LINE L1 5751 6334 0 221 57 29 0 chr12 41025715 41025750 -103256739 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 882 162 28 0 chr12 41025777 41025919 -103256570 - FRAM SINE Alu -27 149 4 203 187 27 27 chr12 41026953 41027028 -103255461 + (TA)n Simple_repeat Simple_repeat 1 75 0 1046 103 85 24 chr12 41027082 41027247 -103255242 - AluSx SINE Alu -137 175 1 4061 236 127 16 chr12 41027357 41028371 -103254118 + Tigger3b DNA MER2_type 2 1128 -103 3021 116 31 11 chr12 41028387 41028843 -103253646 + MER1A DNA MER1_type 59 523 -6 593 223 0 0 chr12 41028850 41028962 -103253527 + Tigger3b DNA MER2_type 1120 1231 -1 266 319 31 6 chr12 41029699 41029862 -103252627 + L1MEd LINE L1 13 179 -5940 330 287 116 63 chr12 41030097 41030477 -103252012 + L1MEd LINE L1 440 839 -5280 1202 226 0 0 chr12 41030575 41030832 -103251657 - L1 LINE L1 -1059 5087 4831 910 282 39 41 chr12 41030828 41031548 -103250941 + L1MEd LINE L1 975 1726 -4584 * 373 283 81 29 chr12 41031908 41032290 -103250199 + L1MEd LINE L1 2130 2531 -3598 2154 189 57 30 chr12 41032290 41032830 -103249659 + L1MD3 LINE L1 7439 7993 -2 1041 208 69 86 chr12 41032828 41033265 -103249224 + L1MC4 LINE L1 7560 7991 -51 * 1582 191 11 7 chr12 41033265 41033572 -103248917 - AluJo SINE Alu 0 313 6 1041 208 69 86 chr12 41033572 41033624 -103248865 + L1MC4 LINE L1 7991 8042 0 8161 159 32 24 chr12 41033783 41035511 -103246978 + L1MA2 LINE L1 8 3014 -4551 2195 110 24 0 chr12 41035511 41035803 -103246686 + AluSx SINE Alu 2 300 -12 8161 159 32 24 chr12 41035803 41035968 -103246521 + L1MA2 LINE L1 3014 3176 -4389 2393 120 29 0 chr12 41035969 41036310 -103246179 + THE1B LTR MaLR 1 351 -13 13751 169 21 41 chr12 41036312 41036821 -103245668 + L1MA2 LINE L1 3204 3722 -4001 3020 90 50 0 chr12 41036821 41037244 -103245245 + MLT2A1 LTR ERVL 1 444 0 13751 169 21 41 chr12 41037244 41041349 -103241140 + L1MA2 LINE L1 3722 7723 0 4785 236 27 22 chr12 41042235 41043769 -103238720 + L1 LINE L1 3951 5492 -2073 254 313 12 24 chr12 41045219 41045302 -103237187 + MIR SINE MIR 16 97 -111 238 316 108 22 chr12 41045392 41045542 -103236947 + MIR SINE MIR 16 181 -66 270 348 43 0 chr12 41046744 41046836 -103235653 - L2 LINE L2 -8 3264 3169 2241 126 0 0 chr12 41047659 41047969 -103234520 - AluSg SINE Alu 0 310 1 2589 56 0 0 chr12 41048304 41048608 -103233881 - AluY SINE Alu -7 304 1 2221 98 3 3 chr12 41048733 41049060 -103233429 + L1PA8 LINE L1 4927 5253 -893 6630 71 23 1 chr12 41049189 41050127 -103232362 + L1PA8 LINE L1 5213 6170 -2 426 244 0 43 chr12 41050128 41050243 -103232246 - MIR SINE MIR -37 225 116 2444 73 0 16 chr12 41050341 41050656 -103231833 + AluY SINE Alu 1 310 -1 22 35 0 0 chr12 41051565 41051594 -103230895 + AT_rich Low_complexity Low_complexity 1 29 0 214 191 0 21 chr12 41051950 41051997 -103230492 + L2 LINE L2 3264 3309 -4 23 33 0 0 chr12 41053315 41053345 -103229144 + AT_rich Low_complexity Low_complexity 1 30 0 1707 124 4 24 chr12 41053703 41053953 -103228536 + AluSg/x SINE Alu 65 309 -3 1304 211 83 62 chr12 41055294 41055610 -103226879 - MSTD LTR MaLR -2 394 67 2570 92 30 14 chr12 41055610 41055979 -103226510 + THE1C LTR MaLR 1 375 0 1304 211 83 62 chr12 41055979 41056046 -103226443 - MSTD LTR MaLR -329 67 3 181 359 120 26 chr12 41056258 41056375 -103226114 + L2 LINE L2 3118 3245 -27 1652 155 0 59 chr12 41056400 41056690 -103225799 - AluJo SINE Alu -39 273 1 380 198 63 61 chr12 41056723 41056888 -103225601 - L1ME3A LINE L1 -215 5951 5785 954 259 47 20 chr12 41057179 41057638 -103224851 + MLT1E2 LTR MaLR 60 607 -19 1124 291 62 67 chr12 41057920 41058534 -103223955 + MLT1E2-int LTR MaLR 661 1271 -100 570 237 116 82 chr12 41058723 41058955 -103223534 + MLT1E2 LTR MaLR 60 299 -327 804 232 62 0 chr12 41058993 41059170 -103223319 + MLT1E2 LTR MaLR 439 626 0 230 235 44 15 chr12 41059194 41059262 -103223227 - L1ME3A LINE L1 -579 5583 5514 329 243 81 47 chr12 41059321 41059469 -103223020 - L1ME3A LINE L1 -731 5431 5279 344 81 3 46 chr12 41059470 41059485 -103223004 - L1PA3 LINE L1 -6 6149 6135 212 57 0 29 chr12 41059485 41059520 -103222969 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 344 81 3 46 chr12 41059520 41059579 -103222910 - L1PA3 LINE L1 -20 6135 6076 377 242 73 48 chr12 41059748 41059913 -103222576 - L1ME LINE L1 -733 5431 5263 19009 32 2 0 chr12 41059926 41063002 -103219487 - L1PA3 LINE L1 -3 6152 3072 42760 32 21 1 chr12 41063016 41069044 -103213445 - L1HS LINE L1 -1 6154 4 24667 50 1 3 chr12 41069045 41072134 -103210355 - L1PA3 LINE L1 -3059 3087 3 260 234 48 54 chr12 41072134 41072301 -103210188 - L1ME LINE L1 -869 5277 5112 1798 130 3 85 chr12 41072380 41072711 -103209778 - AluSx SINE Alu -8 304 1 428 51 17 0 chr12 41072780 41072839 -103209650 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 3115 157 26 2 chr12 41072839 41073379 -103209110 - L1MB2 LINE L1 -39 6132 5580 1702 227 78 73 chr12 41073379 41073930 -103208559 - MLT2B3 LTR ERVL 0 554 1 1169 195 14 65 chr12 41073930 41074222 -103208267 - L1MB2 LINE L1 -587 5584 5308 3750 234 73 10 chr12 41074272 41075337 -103207152 - L1 LINE L1 -762 5384 4247 234 0 0 0 chr12 41075337 41075363 -103207126 + (TG)n Simple_repeat Simple_repeat 2 27 0 3750 234 73 10 chr12 41075363 41075385 -103207104 - L1 LINE L1 -1899 4247 4228 841 189 89 66 chr12 41076329 41076631 -103205858 + MLT1C LTR MaLR 6 314 -153 337 153 24 52 chr12 41076741 41076818 -103205671 - AluS SINE Alu -230 72 1 737 286 150 4 chr12 41076845 41077192 -103205297 - L2 LINE L2 -240 3073 2681 * 1000 306 88 66 chr12 41077190 41077911 -103204578 + L2 LINE L2 2149 2899 -414 2173 95 3 36 chr12 41077911 41078215 -103204274 - AluSc SINE Alu -15 294 1 1000 306 88 66 chr12 41078215 41078603 -103203886 + L2 LINE L2 2899 3277 -36 21 0 0 0 chr12 41078761 41078782 -103203707 + AT_rich Low_complexity Low_complexity 1 21 0 202 278 25 130 chr12 41079052 41079214 -103203275 + L3 LINE CR1 626 770 -807 224 396 97 22 chr12 41080047 41080728 -103201761 - L2 LINE L2 -605 2709 1978 388 339 26 0 chr12 41082437 41082552 -103199937 + L2 LINE L2 3154 3271 -1 986 123 80 71 chr12 41083379 41083591 -103198898 + L1MD1 LINE L1 6029 6242 0 360 269 95 108 chr12 41084386 41084795 -103197694 + L1MC5 LINE L1 7452 7855 -106 2156 111 0 9 chr12 41085594 41085909 -103196580 - AluSx SINE Alu 0 312 1 207 167 0 0 chr12 41087715 41087751 -103194738 + CT-rich Low_complexity Low_complexity 1 36 0 1064 246 82 77 chr12 41087997 41088437 -103194052 + MER65B LTR ERV1 2 513 -18 303 213 74 57 chr12 41088462 41088584 -103193905 + L1ME4a LINE L1 5983 6106 -15 192 77 0 0 chr12 41088711 41088737 -103193752 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1912 180 63 27 chr12 41089265 41089710 -103192779 - MER65C LTR ERV1 0 461 1 436 285 23 32 chr12 41089818 41090039 -103192450 + L1ME4a LINE L1 5664 5882 -239 209 196 43 0 chr12 41090249 41090295 -103192194 + GA-rich Low_complexity Low_complexity 4 51 0 22 35 0 0 chr12 41092271 41092300 -103190189 + AT_rich Low_complexity Low_complexity 1 29 0 340 297 172 0 chr12 41093120 41093248 -103189241 - MIR SINE MIR 0 262 113 1794 301 96 36 chr12 41093868 41094179 -103188310 + L2 LINE L2 1834 2125 -1188 1086 193 157 54 chr12 41094179 41094510 -103187979 + MLT1A1 LTR MaLR 1 365 0 1794 301 96 36 chr12 41094510 41095455 -103187034 + L2 LINE L2 2125 3171 -142 2276 85 3 10 chr12 41095458 41095765 -103186724 + AluY SINE Alu 1 305 -6 1358 92 0 0 chr12 41095765 41095938 -103186551 + AluSp SINE Alu 134 306 -7 221 167 30 121 chr12 41095944 41096010 -103186479 + L2 LINE L2 3139 3198 -74 246 229 0 0 chr12 41096247 41096308 -103186181 + L1ME4a LINE L1 6061 6121 0 421 80 35 6 chr12 41097673 41097749 -103184740 + MLT2A2 LTR ERVL 388 453 0 5510 177 48 1 chr12 41097749 41098883 -103183606 + L1 LINE L1 3653 4840 -1306 1431 129 45 24 chr12 41098896 41099183 -103183306 + L1MA7 LINE L1 5999 6291 0 2304 206 24 24 chr12 41099240 41099817 -103182672 + L1MB1 LINE L1 3211 3787 -2359 392 161 86 37 chr12 41100697 41100778 -103181711 + L1MDa LINE L1 16 100 -6440 652 164 9 0 chr12 41100784 41100900 -103181589 + L1MD1 LINE L1 6074 6190 -52 1824 105 56 4 chr12 41100954 41101221 -103181268 + AluSg SINE Alu 12 292 -18 1773 186 53 11 chr12 41101221 41101582 -103180907 + MER67C LTR ERV1 26 401 -309 2820 176 8 4 chr12 41101585 41102069 -103180420 - MER66B LTR ERV1 0 486 1 2096 200 41 15 chr12 41102073 41104327 -103178162 + L1MB1 LINE L1 3787 6166 -23 1998 132 89 8 chr12 41104327 41104694 -103177795 + L1MB1 LINE L1 5769 6168 0 2096 200 41 15 chr12 41104694 41104715 -103177774 + L1MB1 LINE L1 6166 6185 -4 418 246 93 65 chr12 41105303 41105551 -103176938 + L1MC5 LINE L1 7198 7452 -509 27 29 0 0 chr12 41105564 41105598 -103176891 + AT_rich Low_complexity Low_complexity 1 34 0 390 265 119 7 chr12 41105611 41105762 -103176727 + L1MC4 LINE L1 7735 7902 -140 1158 294 93 13 chr12 41105815 41105978 -103176511 + L1ME3A LINE L1 2918 3067 -3079 1806 172 0 0 chr12 41105978 41106275 -103176214 + AluSx SINE Alu 1 297 -15 1158 294 93 13 chr12 41106275 41107034 -103175455 + L1ME3A LINE L1 3067 3914 -2232 2358 70 3 10 chr12 41107082 41107395 -103175094 + AluY SINE Alu 1 311 0 232 283 0 0 chr12 41107395 41107455 -103175034 + L1ME3A LINE L1 4090 4149 -1997 750 214 80 85 chr12 41107532 41107756 -103174733 + MER58A DNA MER1_type 2 224 0 1722 271 99 37 chr12 41107838 41109081 -103173408 + L1ME3A LINE L1 4808 6170 0 1950 126 0 10 chr12 41110187 41110480 -103172009 - AluSx SINE Alu -22 290 1 315 0 0 0 chr12 41110627 41110662 -103171827 + (TG)n Simple_repeat Simple_repeat 1 35 0 * 399 21 0 0 chr12 41110661 41110709 -103171780 + (GA)n Simple_repeat Simple_repeat 1 48 0 29 0 0 0 chr12 41111281 41111310 -103171179 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr12 41112118 41112147 -103170342 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 41112411 41112432 -103170057 + AT_rich Low_complexity Low_complexity 1 21 0 893 325 97 50 chr12 41112716 41113143 -103169346 - L3 LINE CR1 -89 1488 1026 460 130 0 13 chr12 41113143 41113220 -103169269 + MER116 DNA Mariner 5 80 0 893 325 97 50 chr12 41113220 41113367 -103169122 - L3 LINE CR1 -551 1026 887 507 230 93 22 chr12 41113492 41113631 -103168858 - MIR SINE MIR -21 241 93 5536 55 0 7 chr12 41114257 41114963 -103167526 + L1PA7 LINE L1 5454 6154 0 204 67 0 0 chr12 41114968 41114998 -103167491 + (TAAAAA)n Simple_repeat Simple_repeat 4 33 0 696 274 18 0 chr12 41115018 41115186 -103167303 + MIR SINE MIR 57 227 -35 23 54 0 0 chr12 41115190 41115227 -103167262 + AT_rich Low_complexity Low_complexity 1 37 0 2333 91 3 0 chr12 41116012 41116308 -103166181 + AluSp SINE Alu 1 297 -16 820 121 0 64 chr12 41118117 41118258 -103164231 - FLAM_C SINE Alu -1 132 1 204 182 0 0 chr12 41118763 41118807 -103163682 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 491 257 33 26 chr12 41120381 41120533 -103161956 - MIR SINE MIR -26 236 84 356 311 34 51 chr12 41120700 41120877 -103161612 + L1ME LINE L1 4152 4325 -1821 3606 153 38 19 chr12 41121339 41122059 -103160430 - L1MB7 LINE L1 -8 6176 5444 351 326 27 16 chr12 41122570 41122757 -103159732 + L1ME LINE L1 5265 5453 -717 1991 126 136 16 chr12 41123015 41123397 -103159092 + MSTA LTR MaLR 1 428 0 702 204 121 11 chr12 41123529 41123708 -103158781 + MIR SINE MIR 38 236 -26 264 176 29 73 chr12 41123846 41123914 -103158575 - L2 LINE L2 -5 3308 3244 205 327 204 6 chr12 41124964 41125126 -103157363 - MIR SINE MIR -46 216 23 322 359 34 26 chr12 41126279 41126396 -103156093 - L2 LINE L2 -8 3264 3147 267 79 0 0 chr12 41128206 41128244 -103154245 + (TA)n Simple_repeat Simple_repeat 1 38 0 1625 189 0 14 chr12 41128265 41128551 -103153938 - AluSx SINE Alu -30 282 1 2313 88 3 3 chr12 41128770 41129067 -103153422 - AluSp SINE Alu -16 297 1 3807 107 5 0 chr12 41130486 41131037 -103151452 + MER41A LTR ERV1 1 554 0 236 333 58 25 chr12 41131357 41131477 -103151012 - MIR3 SINE MIR -9 199 76 27 29 0 0 chr12 41131658 41131692 -103150797 + AT_rich Low_complexity Low_complexity 1 34 0 480 18 0 0 chr12 41131975 41132032 -103150457 + (TC)n Simple_repeat Simple_repeat 1 57 0 313 267 61 0 chr12 41133678 41133809 -103148680 + L1ME4a LINE L1 5766 5904 -217 225 198 62 10 chr12 41133811 41133907 -103148582 + (TA)n Simple_repeat Simple_repeat 1 101 0 662 196 0 14 chr12 41134012 41134150 -103148339 - MIR SINE MIR -15 247 112 1638 220 3 21 chr12 41135366 41135738 -103146751 + MLT1A1 LTR MaLR 1 365 0 467 205 79 53 chr12 41135792 41135982 -103146507 + MER63 DNA MER1_type 1 195 -866 * 1127 216 75 23 chr12 41135979 41136326 -103146163 + MER63 DNA MER1_type 641 1005 -56 448 237 42 34 chr12 41136461 41136579 -103145910 - MER5A DNA MER1_type -16 173 55 212 310 161 11 chr12 41136625 41136712 -103145777 - L2 LINE L2 -11 3261 3162 2100 119 3 7 chr12 41137147 41137441 -103145048 + AluSx SINE Alu 1 293 -19 1209 95 18 24 chr12 41138350 41138686 -103143803 + (GAAA)n Simple_repeat Simple_repeat 1 335 0 493 294 95 17 chr12 41139026 41139257 -103143232 - MIR SINE MIR 0 262 14 24 67 0 0 chr12 41139287 41139332 -103143157 + AT_rich Low_complexity Low_complexity 1 45 0 2391 75 0 38 chr12 41140670 41140988 -103141501 - AluSg SINE Alu -4 306 1 2571 217 61 69 chr12 41143545 41144194 -103138295 - L1ME1 LINE L1 -5 6161 5508 2207 97 0 13 chr12 41144194 41144492 -103137997 + AluSc SINE Alu 1 294 -15 2571 217 61 69 chr12 41144492 41145545 -103136944 - L1ME1 LINE L1 -658 5508 4469 900 261 40 10 chr12 41145545 41145848 -103136641 + MLT1C LTR MaLR 156 467 0 51 83 0 0 chr12 41145992 41146113 -103136376 + AT_rich Low_complexity Low_complexity 1 121 0 274 268 0 0 chr12 41146190 41146246 -103136243 - L2 LINE L2 -2 3270 3215 2262 176 52 2 chr12 41146361 41146786 -103135703 - L1PA16 LINE L1 -9 6157 5712 203 262 0 0 chr12 41146924 41146985 -103135504 + A-rich Low_complexity Low_complexity 1 61 0 * 205 77 77 0 chr12 41146948 41146987 -103135502 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 673 273 88 73 chr12 41148140 41148551 -103133938 - MLT1H1 LTR MaLR -3 552 130 610 182 63 0 chr12 41149354 41149447 -103133042 - MER3 DNA MER1_type 0 209 102 590 75 0 0 chr12 41149447 41149527 -103132962 - MADE1 DNA Mariner 0 80 1 610 182 63 0 chr12 41149527 41149576 -103132913 - MER3 DNA MER1_type -107 102 58 2220 117 3 0 chr12 41149603 41149910 -103132579 - AluSx SINE Alu -4 308 1 366 329 14 56 chr12 41149949 41150162 -103132327 + L2 LINE L2 2521 2724 -590 210 331 54 31 chr12 41150176 41150306 -103132183 + L2 LINE L2 2936 3068 -204 262 347 126 12 chr12 41150575 41150742 -103131747 + L2 LINE L2 2863 3048 -224 21 71 0 0 chr12 41152417 41152459 -103130030 + AT_rich Low_complexity Low_complexity 1 42 0 1384 144 0 0 chr12 41152652 41152846 -103129643 + AluSq SINE Alu 1 194 -119 395 189 81 34 chr12 41152857 41153005 -103129484 + L1M4 LINE L1 5121 5275 -871 627 194 107 20 chr12 41153315 41153511 -103128978 - MLT1A1 LTR MaLR -127 238 26 476 287 0 0 chr12 41154596 41154725 -103127764 - MER94 DNA DNA -5 129 1 270 253 144 41 chr12 41154760 41154906 -103127583 - L2 LINE L2 -560 2754 2594 2518 55 0 10 chr12 41155185 41155497 -103126992 - AluY SINE Alu -2 309 1 380 355 121 23 chr12 41155500 41155958 -103126531 + L2 LINE L2 2690 3219 -94 23 0 0 0 chr12 41156042 41156065 -103126424 + AT_rich Low_complexity Low_complexity 1 23 0 733 178 15 22 chr12 41156164 41156299 -103126190 - AluJb SINE Alu -178 134 1 1219 149 56 63 chr12 41156773 41157075 -103125414 - MER44D DNA MER2_type -38 571 2 2143 148 57 31 chr12 41157966 41158482 -103124007 - MLT2A2 LTR ERVL -2 552 1 419 333 72 46 chr12 41158518 41158975 -103123514 - L1 LINE L1 -1531 4615 4147 1742 237 84 22 chr12 41159069 41159558 -103122931 + LTR40a LTR ERVL 1 519 0 2319 93 0 3 chr12 41159818 41160120 -103122369 + AluSg SINE Alu 1 301 -9 2212 114 0 3 chr12 41160121 41160418 -103122071 + AluSx SINE Alu 1 296 -16 323 321 70 58 chr12 41160469 41160883 -103121606 - ERVL LTR ERVL -335 5429 5011 519 313 35 46 chr12 41160953 41161298 -103121191 - ERVL LTR ERVL -956 4808 4468 858 322 44 0 chr12 41161411 41161753 -103120736 - ERVL LTR ERVL -3496 2197 1802 785 255 49 36 chr12 41164289 41164547 -103117942 - L1MEc LINE L1 -6022 374 110 198 118 0 0 chr12 41164547 41164581 -103117908 + (TTG)n Simple_repeat Simple_repeat 2 35 0 785 255 49 36 chr12 41164581 41164651 -103117838 - L1MEc LINE L1 -6286 110 42 41539 44 1 3 chr12 41165548 41171700 -103110789 - L1PA3 LINE L1 -3 6152 13 798 246 5 0 chr12 41171864 41172071 -103110418 + L1 LINE L1 2728 2935 -3211 2489 249 81 20 chr12 41172073 41174109 -103108380 - L1 LINE L1 -3365 3017 971 794 128 0 0 chr12 41174109 41174226 -103108263 - MSTB LTR MaLR -309 117 1 601 237 40 109 chr12 41174952 41175273 -103107216 + AluJo SINE Alu 1 299 -3 2827 99 30 180 chr12 41175641 41176368 -103106121 + MER51A LTR ERV1 1 618 -16 2125 135 0 0 chr12 41176785 41177089 -103105400 - AluSx SINE Alu -8 304 1 31 0 0 0 chr12 41177123 41177154 -103105335 + AT_rich Low_complexity Low_complexity 1 31 0 2137 105 10 7 chr12 41177459 41177753 -103104736 - AluSp SINE Alu -18 295 1 220 286 10 61 chr12 41178202 41178300 -103104189 - MIR SINE MIR -95 167 75 3449 101 28 1 chr12 41179030 41179569 -103102920 + MER41A LTR ERV1 1 554 0 1881 172 27 12 chr12 41180351 41180689 -103101800 + MER61A LTR ERV1 1 343 0 25 75 0 0 chr12 41181042 41181095 -103101394 + AT_rich Low_complexity Low_complexity 1 53 0 21 36 0 0 chr12 41181454 41181482 -103101007 + AT_rich Low_complexity Low_complexity 1 28 0 206 292 42 0 chr12 41181506 41181578 -103100911 + MER5C DNA MER1_type 14 88 -236 2468 66 0 0 chr12 41182169 41182470 -103100019 + AluY SINE Alu 1 301 -10 206 296 45 45 chr12 41183188 41183276 -103099213 + L2 LINE L2 2334 2421 -893 1605 240 20 24 chr12 41183286 41183781 -103098708 + MLT1D LTR MaLR 13 505 0 468 153 36 207 chr12 41184200 41184422 -103098067 + L1ME LINE L1 5543 5726 -440 550 207 7 7 chr12 41184431 41184576 -103097913 + L1MA10 LINE L1 6190 6334 0 452 311 53 0 chr12 41184576 41184785 -103097704 + L1MC/D LINE L1 5602 5821 -1987 948 118 0 0 chr12 41184788 41184915 -103097574 - AluSq/x SINE Alu -186 127 1 26 0 0 0 chr12 41185019 41185045 -103097444 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr12 41185689 41185711 -103096778 + AT_rich Low_complexity Low_complexity 1 22 0 518 160 4 6 chr12 41185714 41185958 -103096531 + AluSx SINE Alu 1 299 -13 185 280 20 0 chr12 41186533 41186583 -103095906 + L2 LINE L2 3221 3271 -1 287 292 73 21 chr12 41186885 41186981 -103095508 - MIR SINE MIR -96 166 66 434 274 96 17 chr12 41187134 41187354 -103095135 - L1M4 LINE L1 -2969 3177 2976 1539 175 88 12 chr12 41187354 41187674 -103094815 + MER2 DNA MER2_type 1 344 0 434 274 96 17 chr12 41187674 41187861 -103094628 - L1M4 LINE L1 -3170 2976 2738 546 37 37 0 chr12 41188216 41188297 -103094192 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 675 201 36 22 chr12 41188727 41188866 -103093623 - FLAM_C SINE Alu -2 141 1 524 209 76 13 chr12 41188981 41189139 -103093350 - L1MD3 LINE L1 0 7995 7828 2332 102 0 0 chr12 41189819 41190122 -103092367 - AluSq SINE Alu -10 303 1 243 0 0 0 chr12 41190618 41190645 -103091844 + (TG)n Simple_repeat Simple_repeat 1 27 0 399 317 79 45 chr12 41190687 41191129 -103091360 - ERVL LTR ERVL -397 5367 4911 274 259 78 26 chr12 41191186 41191302 -103091187 - ERVL LTR ERVL -994 4770 4649 2337 110 0 0 chr12 41191466 41191766 -103090723 + AluSq SINE Alu 1 300 -13 27 65 0 0 chr12 41191997 41192028 -103090461 + AT_rich Low_complexity Low_complexity 1 31 0 227 257 27 14 chr12 41192652 41192726 -103089763 - MLT1I LTR MaLR -24 385 311 359 174 67 15 chr12 41192786 41192890 -103089599 - MLT1J2 LTR MaLR -237 172 67 437 308 73 30 chr12 41193015 41193249 -103089240 - MIR SINE MIR -1 261 18 378 61 0 0 chr12 41193562 41193611 -103088878 + (TG)n Simple_repeat Simple_repeat 2 50 0 285 204 139 109 chr12 41194000 41194042 -103088447 - L1MC5 LINE L1 -268 7693 7654 1841 160 35 0 chr12 41194042 41194329 -103088160 + AluSx SINE Alu 1 297 -15 285 204 139 109 chr12 41194329 41194752 -103087737 - L1MC5 LINE L1 -307 7654 7214 735 221 31 81 chr12 41194936 41195294 -103087195 - L1MC5 LINE L1 -861 7100 6761 2219 138 161 4 chr12 41195803 41196274 -103086215 - LTR10A LTR ERV1 -63 546 2 9665 235 14 28 chr12 41196351 41198805 -103083684 - LTR10A-int LTR ERV1 -2 6647 4229 254 179 0 18 chr12 41198805 41198861 -103083628 - HERVI LTR ERV1 -2478 5307 5253 * 4866 262 18 33 chr12 41198858 41200737 -103081752 - HERVI LTR ERV1 -2712 4114 3169 2173 89 7 14 chr12 41200737 41201029 -103081460 - AluY SINE Alu -21 290 1 4866 262 18 33 chr12 41201029 41201608 -103080881 - HERVI LTR ERV1 -3657 3169 2583 2415 246 81 80 chr12 41201586 41202987 -103079502 - HERVI LTR ERV1 -5244 1405 3 * 2354 116 156 8 chr12 41203002 41203476 -103079013 - LTR10A LTR ERV1 -64 545 2 333 304 62 17 chr12 41203898 41204191 -103078298 + L1ME LINE L1 5353 5658 -463 2315 89 0 22 chr12 41204191 41204504 -103077985 + AluY SINE Alu 1 306 -5 251 273 91 28 chr12 41204505 41204648 -103077841 + L1ME LINE L1 5641 5792 -378 408 228 64 29 chr12 41205489 41205660 -103076829 - L1MC5 LINE L1 -50 7911 7735 19166 139 40 18 chr12 41205695 41209110 -103073379 + L1M1 LINE L1 19 3509 -4056 216 241 0 89 chr12 41209265 41209344 -103073145 + MIR SINE MIR 124 195 -67 22 0 0 0 chr12 41209506 41209528 -103072961 + AT_rich Low_complexity Low_complexity 1 22 0 239 295 45 36 chr12 41209865 41209977 -103072512 + MIR3 SINE MIR 85 197 -11 25 31 0 0 chr12 41210732 41210764 -103071725 + AT_rich Low_complexity Low_complexity 1 32 0 518 309 34 11 chr12 41212581 41212759 -103069730 + MIR SINE MIR 56 237 -25 391 384 50 0 chr12 41213610 41213852 -103068637 - MIR SINE MIR -7 255 2 3243 223 70 8 chr12 41214385 41215443 -103067046 + L1MA3 LINE L1 2253 3375 -2771 6874 138 13 2 chr12 41215587 41217653 -103064836 + L1MA3 LINE L1 4019 6107 -198 500 75 12 0 chr12 41217871 41217951 -103064538 + L1MA1 LINE L1 6222 6302 0 1915 167 10 0 chr12 41218101 41218406 -103064083 - AluJb SINE Alu -4 308 1 247 179 0 36 chr12 41219337 41219393 -103063096 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 1215 340 43 28 chr12 41219466 41220422 -103062067 - ERVL LTR ERVL -3173 2591 1622 1081 189 76 76 chr12 41220836 41220971 -103061518 + MER2 DNA MER2_type 1 135 -209 1948 155 3 7 chr12 41220971 41221280 -103061209 - AluJo SINE Alu -4 308 1 1081 189 76 76 chr12 41221280 41221488 -103061001 + MER2 DNA MER2_type 134 344 0 300 161 18 0 chr12 41222182 41222238 -103060251 - LTR67 LTR ERVL -17 540 484 230 256 51 0 chr12 41222238 41222256 -103060233 - MLT1K LTR MaLR -15 569 492 226 346 90 0 chr12 41223019 41223097 -103059392 - MER5B DNA MER1_type 0 178 94 260 239 130 22 chr12 41223112 41223204 -103059285 - MER91C DNA MER1_type -22 118 17 354 294 152 68 chr12 41225440 41225680 -103056809 + L3 LINE CR1 293 564 -1013 3188 122 32 14 chr12 41225680 41226182 -103056307 + MER9 LTR ERVK 1 511 0 354 294 152 68 chr12 41226182 41226237 -103056252 + L3 LINE CR1 564 613 -964 346 377 181 4 chr12 41226293 41226574 -103055915 - L2 LINE L2 -9 3263 2933 38 51 0 0 chr12 41226622 41226681 -103055808 + AT_rich Low_complexity Low_complexity 1 59 0 287 227 45 0 chr12 41227224 41227378 -103055111 + (CA)n Simple_repeat Simple_repeat 2 162 0 361 222 34 106 chr12 41227586 41227714 -103054775 + MLT1E1 LTR MaLR 98 234 -359 746 201 29 17 chr12 41227714 41227799 -103054690 - L1PB4 LINE L1 0 6156 6073 2184 118 27 18 chr12 41227799 41228130 -103054359 + MER1B DNA MER1_type 1 334 -3 746 201 29 17 chr12 41228130 41228218 -103054271 - L1PB4 LINE L1 -83 6073 5981 361 222 34 106 chr12 41228218 41228323 -103054166 + MLT1E1 LTR MaLR 234 408 -185 721 167 14 0 chr12 41228324 41228462 -103054027 - MER41B LTR ERV1 0 635 496 3041 148 8 4 chr12 41228630 41229151 -103053338 - MER41B LTR ERV1 -109 526 4 718 194 31 31 chr12 41229182 41229342 -103053147 + MLT1E1 LTR MaLR 495 654 0 1232 140 0 0 chr12 41229626 41229826 -103052663 + L1PB1 LINE L1 1 200 -6663 9256 98 28 8 chr12 41229828 41231755 -103050734 + L1PB1 LINE L1 636 2760 -4103 6243 153 46 4 chr12 41231738 41233411 -103049078 + L1PB1 LINE L1 5111 6865 -2 * 24 0 0 0 chr12 41233411 41233435 -103049054 + AT_rich Low_complexity Low_complexity 1 24 0 216 333 40 0 chr12 41233613 41233688 -103048801 - L2 LINE L2 -558 2756 2679 256 164 55 0 chr12 41233706 41233761 -103048728 - L1MA7 LINE L1 -8 6283 6226 440 198 123 130 chr12 41233996 41234320 -103048169 - LTR37A LTR ERV1 -21 405 84 1985 97 86 0 chr12 41234391 41234670 -103047819 - AluSg SINE Alu -7 303 1 3775 166 24 24 chr12 41234741 41235463 -103047026 - MER50 LTR ERV1 -12 722 1 362 328 57 16 chr12 41236317 41236439 -103046050 - L2 LINE L2 -8 3264 3138 22 0 0 0 chr12 41236974 41236996 -103045493 + AT_rich Low_complexity Low_complexity 1 22 0 395 301 51 32 chr12 41237247 41237463 -103045026 - LTR33 LTR ERVL 0 521 302 749 243 192 5 chr12 41237593 41237807 -103044682 + MIR SINE MIR 6 259 -3 329 271 127 25 chr12 41238103 41238221 -103044268 + MLT1K LTR MaLR 293 422 -166 2549 165 31 0 chr12 41238283 41238696 -103043793 - MSTB LTR MaLR 0 426 1 182 212 167 15 chr12 41239006 41239072 -103043417 - MIR SINE MIR -89 173 98 2232 123 0 0 chr12 41239072 41239373 -103043116 + AluSg1 SINE Alu 1 301 -8 2159 108 24 0 chr12 41239495 41239792 -103042697 + AluSp SINE Alu 1 304 -9 237 306 12 17 chr12 41239926 41240099 -103042390 + (TA)n Simple_repeat Simple_repeat 1 172 0 221 364 125 0 chr12 41240440 41240528 -103041961 - L2 LINE L2 0 3272 3174 2243 122 0 51 chr12 41241535 41241889 -103040600 - MER1B DNA MER1_type -1 336 1 223 141 16 141 chr12 41242091 41242155 -103040334 + MIR3 SINE MIR 144 199 -9 871 131 22 7 chr12 41243175 41243312 -103039177 - AluJo SINE Alu -173 139 1 22 35 0 0 chr12 41244583 41244612 -103037877 + AT_rich Low_complexity Low_complexity 1 29 0 676 181 68 17 chr12 41245339 41245516 -103036973 - MER53 DNA DNA -1 188 3 896 101 0 8 chr12 41246217 41246383 -103036106 + AluYa5 SINE Alu 155 319 0 2294 117 114 5 chr12 41246535 41246921 -103035568 + MSTA LTR MaLR 1 428 0 30 27 0 0 chr12 41247086 41247123 -103035366 + AT_rich Low_complexity Low_complexity 1 37 0 1417 149 64 73 chr12 41247984 41248312 -103034177 - MER2 DNA MER2_type -12 333 9 481 255 69 7 chr12 41248314 41248459 -103034030 - MIR SINE MIR -6 256 103 452 317 48 43 chr12 41250159 41250345 -103032144 - MIR3 SINE MIR -12 196 10 14978 179 21 11 chr12 41250800 41251717 -103030772 - L1PB1 LINE L1 -1 6866 5960 2194 121 3 3 chr12 41251717 41252022 -103030467 - AluSc SINE Alu -4 305 1 14978 179 21 11 chr12 41252022 41254991 -103027498 - L1PB1 LINE L1 -907 5960 2657 2048 138 7 0 chr12 41254991 41255288 -103027201 - AluY SINE Alu -12 299 1 14978 179 21 11 chr12 41255288 41257329 -103025160 - L1PB1 LINE L1 -4210 2657 639 1134 157 0 0 chr12 41257327 41257524 -103024965 - L1PB1 LINE L1 -6666 197 1 * 2085 137 0 0 chr12 41257613 41257913 -103024576 + AluSc SINE Alu 1 300 -9 287 221 13 26 chr12 41258121 41258198 -103024291 + MLT1J2 LTR MaLR 345 420 -30 21 0 0 0 chr12 41258835 41258856 -103023633 + AT_rich Low_complexity Low_complexity 1 21 0 391 384 54 17 chr12 41259533 41259996 -103022493 - L2 LINE L2 -404 2910 2431 522 289 91 45 chr12 41260042 41260395 -103022094 + MLT1A2 LTR MaLR 6 374 0 345 280 67 36 chr12 41260406 41260599 -103021890 - L2 LINE L2 -931 2383 2185 2730 248 80 70 chr12 41260624 41261974 -103020515 - L2 LINE L2 -1 3312 1956 2293 86 3 7 chr12 41261995 41262297 -103020192 + AluY SINE Alu 1 301 -10 2307 228 42 19 chr12 41262306 41262876 -103019613 - MER119 DNA MER1_type 0 583 1 312 263 10 30 chr12 41263047 41263146 -103019343 - L2 LINE L2 -1431 1883 1787 485 238 59 123 chr12 41263871 41263957 -103018532 + L2 LINE L2 2995 3085 -228 2149 163 75 5 chr12 41263957 41264355 -103018134 + MSTB LTR MaLR 1 426 0 485 238 59 123 chr12 41264355 41264609 -103017880 + L2 LINE L2 3085 3313 0 335 226 54 54 chr12 41265763 41265856 -103016633 - L1MC2 LINE L1 -28 6316 6224 1365 143 0 0 chr12 41265887 41266111 -103016378 + L1 LINE L1 3348 3571 -2575 2122 147 16 0 chr12 41266114 41266488 -103016001 + L1 LINE L1 3454 3833 -2313 289 79 5 5 chr12 41266502 41266705 -103015784 + AluSp SINE Alu 1 298 -5 251 266 0 0 chr12 41266708 41266772 -103015717 + L1 LINE L1 3841 3904 -2242 * 5121 174 29 18 chr12 41266769 41267751 -103014738 + L1 LINE L1 4315 5312 -834 2112 112 7 0 chr12 41267751 41268038 -103014451 + AluSg SINE Alu 1 289 -21 5121 174 29 18 chr12 41268038 41268132 -103014357 + L1 LINE L1 5312 5403 -743 230 130 65 0 chr12 41268139 41268185 -103014304 - L1MC2 LINE L1 -2517 5525 5477 349 243 19 19 chr12 41268246 41268353 -103014136 + GA-rich Low_complexity Low_complexity 1 107 0 1765 151 55 27 chr12 41268406 41268771 -103013718 + THE1C LTR MaLR 1 375 0 321 26 0 0 chr12 41269057 41269095 -103013394 + (TA)n Simple_repeat Simple_repeat 1 38 0 395 253 68 39 chr12 41270181 41270462 -103012027 + L1M4 LINE L1 4423 4711 -1435 255 152 0 0 chr12 41270493 41270539 -103011950 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 24 0 0 0 chr12 41270539 41270563 -103011926 + AT_rich Low_complexity Low_complexity 1 24 0 1265 224 59 11 chr12 41271407 41271693 -103010796 + AluJo SINE Alu 1 300 -12 732 157 20 169 chr12 41271794 41272042 -103010447 + AluJb SINE Alu 1 211 -101 2226 117 0 0 chr12 41272146 41272453 -103010036 + AluSg SINE Alu 1 307 -3 1384 205 85 20 chr12 41273080 41273421 -103009068 + MLT1A1 LTR MaLR 2 364 -1 247 127 64 9 chr12 41273445 41273555 -103008934 + (TA)n Simple_repeat Simple_repeat 2 117 0 2663 149 0 48 chr12 41273881 41274377 -103008112 - L1MA7 LINE L1 -386 5905 5434 272 118 59 0 chr12 41274379 41274430 -103008059 + L1MA7 LINE L1 6237 6290 -1 222 171 0 0 chr12 41274598 41274639 -103007850 + CT-rich Low_complexity Low_complexity 3 43 0 407 318 110 12 chr12 41275483 41275656 -103006833 + L2 LINE L2 3083 3272 0 312 91 0 0 chr12 41275784 41275828 -103006661 + (TG)n Simple_repeat Simple_repeat 1 44 0 28 0 0 0 chr12 41276592 41276620 -103005869 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr12 41276934 41276959 -103005530 + AT_rich Low_complexity Low_complexity 1 25 0 232 347 54 12 chr12 41278621 41278786 -103003703 - MIR SINE MIR -65 143 20 2244 113 0 0 chr12 41279082 41279383 -103003106 + AluSg SINE Alu 1 301 -9 393 309 41 0 chr12 41279455 41279578 -103002911 - MIR SINE MIR -88 174 47 232 281 0 0 chr12 41279955 41280012 -103002477 + Charlie2 DNA MER1_type 25 81 -2701 377 247 10 41 chr12 41280045 41280142 -103002347 - L1MC/D LINE L1 -2205 5603 5510 270 153 0 0 chr12 41281296 41281355 -103001134 + T-rich Low_complexity Low_complexity 1 59 0 1010 25 0 0 chr12 41281358 41281478 -103001011 - L1PA4 LINE L1 -3 6152 6033 21 82 0 0 chr12 41283057 41283106 -102999383 + AT_rich Low_complexity Low_complexity 1 49 0 226 214 0 0 chr12 41283503 41283545 -102998944 + (TGG)n Simple_repeat Simple_repeat 2 43 0 2348 108 0 0 chr12 41284523 41284830 -102997659 + AluSc SINE Alu 1 307 -2 270 0 0 0 chr12 41285254 41285284 -102997205 + (TA)n Simple_repeat Simple_repeat 1 30 0 846 260 154 9 chr12 41285535 41285873 -102996616 + MLT1H1 LTR MaLR 1 387 -168 44 56 0 0 chr12 41286924 41286996 -102995493 + AT_rich Low_complexity Low_complexity 1 72 0 227 235 265 10 chr12 41287238 41287336 -102995153 - MIR SINE MIR -56 206 84 2350 50 7 0 chr12 41287422 41287704 -102994785 + AluY SINE Alu 24 307 -4 608 275 44 6 chr12 41287858 41288018 -102994471 - MER5B DNA MER1_type -12 166 1 2108 107 0 4 chr12 41288488 41288797 -102993692 - AluY SINE Alu 0 308 1 2178 111 0 29 chr12 41291275 41291582 -102990907 - AluSg SINE Alu -12 298 1 38942 48 1 10 chr12 41292618 41297519 -102984970 - L1P LINE L1 -1274 4872 13 849 231 58 0 chr12 41297648 41297891 -102984598 + L1 LINE L1 2680 2936 -3210 2515 249 117 25 chr12 41297892 41299893 -102982596 - L1 LINE L1 -3365 3017 971 829 157 0 39 chr12 41299893 41300046 -102982443 - MSTB LTR MaLR -279 147 1 599 237 40 109 chr12 41300772 41301093 -102981396 + AluJo SINE Alu 1 299 -3 3047 99 31 179 chr12 41301461 41302196 -102980293 + MER51A LTR ERV1 1 642 -15 2101 135 0 0 chr12 41302605 41302909 -102979580 - AluSx SINE Alu -8 304 1 31 0 0 0 chr12 41302943 41302974 -102979515 + AT_rich Low_complexity Low_complexity 1 31 0 1847 105 54 37 chr12 41303330 41303625 -102978864 - AluSg SINE Alu 0 310 11 319 172 81 0 chr12 41304329 41304416 -102978073 + AluJb SINE Alu 85 178 -124 2054 106 7 17 chr12 41305206 41305508 -102976981 - AluY SINE Alu -12 299 1 315 314 35 0 chr12 41306031 41306117 -102976372 + L3 LINE CR1 1393 1481 -96 1688 195 0 10 chr12 41306976 41307268 -102975221 + AluJo SINE Alu 1 289 -23 23 0 0 0 chr12 41308193 41308216 -102974273 + AT_rich Low_complexity Low_complexity 1 23 0 386 316 62 34 chr12 41308969 41309146 -102973343 - MIR3 SINE MIR -11 197 16 22 0 0 0 chr12 41309430 41309452 -102973037 + AT_rich Low_complexity Low_complexity 1 22 0 217 241 0 89 chr12 41309613 41309692 -102972797 - MIR SINE MIR -67 195 124 270 56 0 0 chr12 41310030 41310066 -102972423 + (TG)n Simple_repeat Simple_repeat 1 36 0 2595 272 109 28 chr12 41310932 41312095 -102970394 - L2 LINE L2 -1223 2091 835 1331 129 214 15 chr12 41312247 41312518 -102969971 + L1MC3 LINE L1 5445 5769 -2226 4414 179 111 30 chr12 41312519 41313535 -102968954 + L1MC3 LINE L1 6678 7776 -9 280 288 54 9 chr12 41313977 41314088 -102968401 - L2 LINE L2 -5 3308 3193 698 203 0 30 chr12 41314772 41314905 -102967584 + FLAM_C SINE Alu 3 131 -12 38893 47 5 8 chr12 41316068 41320954 -102961535 + L1P LINE L1 2 4872 -1274 2178 111 0 29 chr12 41321990 41322297 -102960192 + AluSg SINE Alu 1 298 -12 2109 107 0 4 chr12 41324775 41325084 -102957405 + AluY SINE Alu 1 308 0 608 275 44 6 chr12 41325553 41325713 -102956776 + MER5B DNA MER1_type 1 166 -12 2350 50 7 0 chr12 41325867 41326149 -102956340 - AluY SINE Alu -4 307 24 242 246 305 8 chr12 41326235 41326353 -102956136 + MIR SINE MIR 84 236 -26 190 403 0 0 chr12 41328445 41328507 -102953982 + L2 LINE L2 3125 3186 -86 548 296 61 38 chr12 41328605 41328860 -102953629 + L1MC/D LINE L1 3804 4052 -2094 823 212 12 18 chr12 41328860 41329025 -102953464 + FRAM SINE Alu 1 164 -2 548 296 61 38 chr12 41329025 41329912 -102952577 + L1MC/D LINE L1 4052 5051 -1095 329 281 31 23 chr12 41329952 41330080 -102952409 + L1MC/D LINE L1 5122 5250 -896 307 288 65 6 chr12 41330101 41330271 -102952218 + L1MC/D LINE L1 5309 5488 -2320 2465 31 0 0 chr12 41330341 41330635 -102951854 - L1PA4 LINE L1 -2 6153 5860 292 263 26 174 chr12 41330944 41331134 -102951355 + L2 LINE L2 3109 3270 -2 291 326 37 37 chr12 41331142 41331277 -102951212 + L3b LINE CR1 1253 1387 -196 587 261 114 0 chr12 41332343 41332527 -102949962 + MIR SINE MIR 2 206 -56 42 89 0 0 chr12 41332527 41332639 -102949850 + AT_rich Low_complexity Low_complexity 1 112 0 1750 204 53 71 chr12 41333813 41333930 -102948559 + MLT1D LTR MaLR 1 119 -386 2486 122 2 17 chr12 41333930 41334332 -102948157 + L1MA5A LINE L1 5901 6296 -1 1750 204 53 71 chr12 41334332 41334724 -102947765 + MLT1D LTR MaLR 119 501 -4 2050 165 44 0 chr12 41334932 41335337 -102947152 + L1MA8 LINE L1 5853 6275 -16 2273 93 28 0 chr12 41335378 41335669 -102946820 - AluSc SINE Alu -10 299 1 14923 122 27 10 chr12 41335745 41338120 -102944369 + Tigger1 DNA MER2_type 1 2417 -1 1620 173 13 51 chr12 41338455 41338583 -102943906 + AluJo SINE Alu 1 132 -180 225 0 0 0 chr12 41338583 41338608 -102943881 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1620 173 13 51 chr12 41338608 41338792 -102943697 + AluJo SINE Alu 132 301 -11 21 36 0 0 chr12 41340092 41340120 -102942369 + AT_rich Low_complexity Low_complexity 1 28 0 533 330 101 68 chr12 41341277 41341780 -102940709 + L2 LINE L2 1802 2321 -993 221 348 43 26 chr12 41342688 41342803 -102939686 - L2 LINE L2 -2 3311 3195 1643 260 109 47 chr12 41342861 41343114 -102939375 + L2 LINE L2 2400 2636 -677 476 272 59 24 chr12 41343114 41343283 -102939206 + MER69A DNA AcHobo 3 177 0 1643 260 109 47 chr12 41343283 41343869 -102938620 + L2 LINE L2 2636 3301 -12 187 250 155 103 chr12 41344284 41344400 -102938089 - MIR SINE MIR -70 138 17 319 306 145 7 chr12 41344652 41344956 -102937533 + L1MC4a LINE L1 4525 4870 -1276 1372 217 51 51 chr12 41345048 41345421 -102937068 + MLT1A2 LTR MaLR 2 374 0 338 296 106 37 chr12 41345653 41346166 -102936323 + L1MC4a LINE L1 5282 5849 -297 21910 146 38 10 chr12 41347236 41351083 -102931406 + L1MA2 LINE L1 17 3971 -3594 6370 146 19 7 chr12 41351260 41353368 -102929121 + L1MA2 LINE L1 5596 7719 -4 23 0 0 0 chr12 41353655 41353678 -102928811 + AT_rich Low_complexity Low_complexity 1 23 0 34 65 0 0 chr12 41353716 41353778 -102928711 + AT_rich Low_complexity Low_complexity 1 62 0 335 323 30 23 chr12 41354740 41354873 -102927616 + MIR SINE MIR 26 159 -103 394 284 269 47 chr12 41354874 41355023 -102927466 - L2 LINE L2 0 3313 3198 2453 55 0 16 chr12 41355023 41355335 -102927154 + AluY SINE Alu 1 307 -4 394 284 269 47 chr12 41355335 41355611 -102926878 - L2 LINE L2 -115 3198 2798 2032 298 135 47 chr12 41355815 41357293 -102925196 - L2 LINE L2 -560 2754 1147 435 282 34 27 chr12 41357615 41357764 -102924725 + MER5B DNA MER1_type 28 177 -1 2539 119 22 44 chr12 41358369 41358823 -102923666 + MER65A LTR ERV1 2 445 0 24 0 0 0 chr12 41358865 41358889 -102923600 + AT_rich Low_complexity Low_complexity 1 24 0 237 344 64 38 chr12 41359143 41359300 -102923189 - MIR SINE MIR -73 189 29 22 0 0 0 chr12 41360154 41360176 -102922313 + AT_rich Low_complexity Low_complexity 1 22 0 313 205 46 133 chr12 41360191 41360342 -102922147 - MIR SINE MIR 0 262 125 774 209 6 6 chr12 41360433 41360591 -102921898 + Tigger1 DNA MER2_type 1 158 -2260 * 1169 130 48 5 chr12 41360580 41360787 -102921702 + Tigger1 DNA MER2_type 2203 2418 0 6739 137 35 22 chr12 41361024 41361979 -102920510 + Tigger3b DNA MER2_type 1 976 -2052 2243 95 3 0 chr12 41361979 41362273 -102920216 - AluSc SINE Alu -14 295 1 6739 137 35 22 chr12 41362273 41362533 -102919956 + Tigger3b DNA MER2_type 976 1231 0 348 155 17 0 chr12 41362553 41362611 -102919878 + MLT2F LTR ERVL 1 59 -604 413 128 139 23 chr12 41362658 41362744 -102919745 + MLT2F LTR ERVL 565 660 -3 22 0 0 0 chr12 41363727 41363749 -102918740 + AT_rich Low_complexity Low_complexity 1 22 0 3267 149 68 102 chr12 41366065 41366265 -102916224 + LTR39 LTR ERV1 1 206 -577 2140 131 7 0 chr12 41366265 41366563 -102915926 + AluSq SINE Alu 1 300 -13 3267 149 68 102 chr12 41366563 41367083 -102915406 + LTR39 LTR ERV1 206 692 -91 2069 93 65 0 chr12 41367083 41367361 -102915128 - AluSq SINE Alu -17 296 1 3267 149 68 102 chr12 41367361 41367449 -102915040 + LTR39 LTR ERV1 692 782 -1 269 311 114 23 chr12 41367485 41367617 -102914872 + L2 LINE L2 2918 3061 -211 23 33 0 0 chr12 41367791 41367821 -102914668 + AT_rich Low_complexity Low_complexity 1 30 0 1784 176 0 3 chr12 41367887 41368176 -102914313 + AluJo SINE Alu 1 288 -24 198 0 0 0 chr12 41368182 41368204 -102914285 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 208 305 125 23 chr12 41368214 41368342 -102914147 - MIR3 SINE MIR -64 144 4 198 305 32 42 chr12 41369176 41369271 -102913218 + MIR SINE MIR 20 113 -95 245 335 31 56 chr12 41370283 41370444 -102912045 - MIR SINE MIR -78 184 28 2122 138 0 0 chr12 41370687 41370983 -102911506 + AluSx SINE Alu 3 298 -14 2400 95 0 0 chr12 41371115 41371411 -102911078 + AluSx SINE Alu 3 298 -14 599 205 18 0 chr12 41372913 41373025 -102909464 + MER94 DNA DNA 1 114 -20 398 321 58 22 chr12 41373587 41373811 -102908678 + L2 LINE L2 3075 3306 -7 342 296 222 24 chr12 41374191 41374411 -102908078 + MIR SINE MIR 1 259 -3 22 0 0 0 chr12 41374808 41374830 -102907659 + AT_rich Low_complexity Low_complexity 1 22 0 2231 53 11 25 chr12 41374911 41375193 -102907296 + AluY SINE Alu 21 298 -13 36 0 0 0 chr12 41375487 41375523 -102906966 + AT_rich Low_complexity Low_complexity 1 36 0 307 268 37 0 chr12 41375982 41376064 -102906425 + MER102b DNA MER1_type 246 330 -11 2350 108 0 3 chr12 41376444 41376758 -102905731 + AluSq SINE Alu 1 313 0 2282 85 0 3 chr12 41377246 41377539 -102904950 - AluSx SINE Alu -20 292 1 539 156 0 115 chr12 41377862 41377984 -102904505 + MER2 DNA MER2_type 1 108 -237 372 100 100 0 chr12 41377985 41378045 -102904444 + MER4A LTR ERV1 33 98 -566 1712 132 5 77 chr12 41378045 41378417 -102904072 + MER4A LTR ERV1 261 664 0 546 133 64 92 chr12 41378581 41378754 -102903735 - MER33 DNA MER1_type -1 323 156 427 199 248 7 chr12 41378844 41378985 -102903504 - MER33 DNA MER1_type -149 175 1 347 306 26 52 chr12 41380089 41380282 -102902207 + L1ME LINE L1 5562 5749 -372 2399 71 0 0 chr12 41380488 41380783 -102901706 + AluY SINE Alu 1 295 -16 192 362 131 39 chr12 41381669 41381771 -102900718 - L2 LINE L2 -456 2858 2767 1401 166 38 25 chr12 41381771 41382091 -102900398 + MER33 DNA MER1_type 1 324 0 192 362 131 39 chr12 41382091 41382619 -102899870 - L2 LINE L2 -547 2767 2289 8045 86 6 1 chr12 41382619 41383685 -102898804 + MER11C LTR ERVK 1 1071 0 192 362 131 39 chr12 41383685 41383877 -102898612 - L2 LINE L2 -1025 2289 2116 2068 134 7 0 chr12 41383877 41384184 -102898305 + AluSp SINE Alu 1 309 -4 192 362 131 39 chr12 41384184 41384202 -102898287 - L2 LINE L2 -1198 2116 1939 794 273 32 5 chr12 41384250 41384437 -102898052 - MIR SINE MIR -52 210 19 1898 132 36 3 chr12 41385112 41385415 -102897074 - AluSq SINE Alu 0 313 1 2013 205 89 0 chr12 41386677 41387150 -102895339 + MER34 LTR ERV1 27 541 -1 321 26 0 0 chr12 41387151 41387189 -102895300 + (CA)n Simple_repeat Simple_repeat 2 39 0 365 249 76 103 chr12 41388441 41388579 -102893910 - MIR SINE MIR -17 245 112 2242 147 39 18 chr12 41388579 41389020 -102893469 + LTR7 LTR ERV1 1 450 0 365 249 76 103 chr12 41389020 41389066 -102893423 - MIR SINE MIR -150 112 66 2247 72 0 44 chr12 41389216 41389534 -102892955 - AluY SINE Alu -7 304 1 1551 194 14 28 chr12 41390550 41390839 -102891650 - AluJo SINE Alu -27 285 1 192 341 133 7 chr12 41393326 41393461 -102889028 + MIR3 SINE MIR 42 193 -15 884 265 215 19 chr12 41393526 41394001 -102888488 + L2 LINE L2 1447 2014 -1300 2478 58 10 10 chr12 41394582 41394892 -102887597 + AluY SINE Alu 1 310 -1 2113 106 0 0 chr12 41394910 41395193 -102887296 + AluSx SINE Alu 20 302 -10 2234 70 40 7 chr12 41395509 41395810 -102886679 - AluY SINE Alu 0 311 1 465 235 80 31 chr12 41396065 41396107 -102886382 - MER102b DNA MER1_type -2152 265 227 340 101 101 114 chr12 41396107 41396186 -102886303 + MADE1 DNA Mariner 3 80 0 465 235 80 31 chr12 41396186 41396305 -102886184 - MER102b DNA MER1_type -2190 227 96 729 271 0 0 chr12 41396823 41396993 -102885496 + MER41D LTR ERV1 387 556 -1 24 0 0 0 chr12 41397178 41397202 -102885287 + AT_rich Low_complexity Low_complexity 1 24 0 1923 92 136 27 chr12 41397679 41398017 -102884472 - MER51B LTR ERV1 -2 375 1 5204 246 61 39 chr12 41398058 41399349 -102883140 + L1M4b LINE L1 102 1445 -5514 369 0 0 0 chr12 41399349 41399390 -102883099 + (CA)n Simple_repeat Simple_repeat 2 42 0 5204 246 61 39 chr12 41399390 41400340 -102882149 + L1M4b LINE L1 1445 2373 -4586 608 285 5 15 chr12 41400430 41400630 -102881859 + L2 LINE L2 1489 1686 -1628 27 29 0 0 chr12 41400967 41401001 -102881488 + AT_rich Low_complexity Low_complexity 1 34 0 520 293 163 30 chr12 41401162 41401432 -102881057 - L2 LINE L2 0 3313 3008 426 228 11 11 chr12 41401446 41401538 -102880951 - MIR SINE MIR -115 147 56 1018 190 22 0 chr12 41401986 41402170 -102880319 - MER5A DNA MER1_type 0 189 2 2346 106 3 0 chr12 41502505 41502816 -102779673 - AluSx SINE Alu 0 312 1 7538 34 0 0 chr12 41504651 41506310 -102776179 + L1PA4 LINE L1 4495 6155 0 2199 111 0 3 chr12 41507134 41507431 -102775058 + AluSx SINE Alu 1 296 -16 4574 121 25 1 chr12 41508055 41508829 -102773660 + Tigger1 DNA MER2_type 1421 2212 -206 2184 151 23 25 chr12 41509984 41510381 -102772108 + MSTD LTR MaLR 1 396 0 34 55 0 0 chr12 41511006 41511061 -102771428 + AT_rich Low_complexity Low_complexity 1 55 0 372 301 108 15 chr12 41511301 41511504 -102770985 - L1ME4a LINE L1 -53 6068 5847 1969 152 7 0 chr12 41511514 41511804 -102770685 + AluSx SINE Alu 7 298 -14 565 189 106 53 chr12 41513372 41513709 -102768780 - MLT1A2 LTR MaLR 0 457 4 1655 244 30 8 chr12 41513810 41514211 -102768278 - L1M3c LINE L1 -5721 420 11 350 296 80 46 chr12 41514894 41515330 -102767159 + HAL1 LINE L1 803 1253 -1254 305 343 130 11 chr12 41515776 41516239 -102766250 + HAL1 LINE L1 1405 1922 -585 2362 121 19 22 chr12 41516329 41516694 -102765795 - THE1B LTR MaLR 0 364 1 27 0 0 0 chr12 41516711 41516738 -102765751 + AT_rich Low_complexity Low_complexity 1 27 0 1223 232 121 49 chr12 41516816 41517264 -102765225 + MLT2B1 LTR ERVL 1 480 -40 260 223 45 0 chr12 41517267 41517379 -102765110 + (TATATG)n Simple_repeat Simple_repeat 3 119 0 246 62 0 0 chr12 41517442 41517474 -102765015 + (TA)n Simple_repeat Simple_repeat 1 32 0 256 104 21 21 chr12 41517477 41517525 -102764964 + MLT2D LTR ERVL 367 414 0 23510 58 194 0 chr12 41518484 41522016 -102760473 + L1P LINE L1 4 4220 -1926 1335 235 82 22 chr12 41522504 41522955 -102759534 - L1ME1 LINE L1 -4 6162 5685 395 297 27 0 chr12 41522998 41523109 -102759380 + MIR3 SINE MIR 85 198 -10 1242 251 74 20 chr12 41523354 41523800 -102758689 - LTR38 LTR ERV1 0 556 87 2221 106 3 0 chr12 41523837 41524148 -102758341 - AluSq SINE Alu -1 312 1 221 306 148 79 chr12 41524443 41524835 -102757654 - L2 LINE L2 -545 2769 2351 227 286 0 0 chr12 41525193 41525256 -102757233 + MIR SINE MIR 200 262 0 300 101 14 29 chr12 41526749 41526818 -102755671 + (TTTTA)n Simple_repeat Simple_repeat 4 71 0 2174 100 0 4 chr12 41527670 41527974 -102754515 + AluSg1 SINE Alu 1 303 0 842 159 0 0 chr12 41528119 41528251 -102754238 - FLAM_C SINE Alu 0 133 2 21 0 0 0 chr12 41528390 41528411 -102754078 + AT_rich Low_complexity Low_complexity 1 21 0 331 277 245 16 chr12 41528755 41528939 -102753550 + MIR SINE MIR 25 250 -12 22 35 0 0 chr12 41529192 41529221 -102753268 + AT_rich Low_complexity Low_complexity 1 29 0 354 98 0 0 chr12 41530483 41530534 -102751955 + (TG)n Simple_repeat Simple_repeat 2 52 0 300 222 62 0 chr12 41531096 41531177 -102751312 - MLT1J LTR MaLR -108 403 318 2181 147 61 20 chr12 41531242 41531651 -102750838 - MSTB1 LTR MaLR 0 432 7 438 285 186 10 chr12 41531658 41531851 -102750638 - MLT1J LTR MaLR -282 229 3 387 0 0 0 chr12 41532502 41532545 -102749944 + (TG)n Simple_repeat Simple_repeat 2 44 0 844 273 194 15 chr12 41533235 41533642 -102748847 - MLT1J LTR MaLR -31 480 1 184 329 41 27 chr12 41534500 41534573 -102747916 + L2 LINE L2 2982 3055 -258 1815 258 102 15 chr12 41534573 41535111 -102747378 + MLT1E LTR MaLR 1 585 -8 308 264 146 35 chr12 41535730 41535874 -102746615 + MER5A DNA MER1_type 30 189 0 25 0 0 0 chr12 41535894 41535919 -102746570 + AT_rich Low_complexity Low_complexity 1 25 0 986 148 16 44 chr12 41535925 41536108 -102746381 - AluJo SINE Alu -12 300 123 21 0 0 0 chr12 41537125 41537146 -102745343 + AT_rich Low_complexity Low_complexity 1 21 0 214 223 124 83 chr12 41537325 41537446 -102745043 - L3 LINE CR1 -1 1576 1451 452 243 150 65 chr12 41537694 41538052 -102744437 - MLT1E1 LTR MaLR -218 436 1 2369 70 3 10 chr12 41538413 41538715 -102743774 - AluY SINE Alu -11 300 1 212 68 0 68 chr12 41538982 41539026 -102743463 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 706 211 0 8 chr12 41539030 41539163 -102743326 - FLAM_A SINE Alu 0 133 2 2062 102 7 10 chr12 41539471 41539774 -102742715 + AluSx SINE Alu 1 302 -10 902 310 46 3 chr12 41539956 41540240 -102742249 - LTR33 LTR ERVL -223 298 3 2066 129 7 0 chr12 41540394 41540688 -102741801 - AluSg SINE Alu -14 296 1 24 32 0 0 chr12 41543321 41543352 -102739137 + AT_rich Low_complexity Low_complexity 1 31 0 213 200 40 0 chr12 41543509 41543559 -102738930 + (TATG)n Simple_repeat Simple_repeat 4 55 0 22 0 0 0 chr12 41543854 41543876 -102738613 + AT_rich Low_complexity Low_complexity 1 22 0 270 203 159 0 chr12 41543878 41543947 -102738542 - MIR SINE MIR -120 142 63 1300 249 70 38 chr12 41543954 41544400 -102738089 - LTR40c LTR ERVL -5 460 1 578 304 100 7 chr12 41546565 41546835 -102735654 - L2 LINE L2 -553 2761 2467 205 275 225 35 chr12 41547190 41547332 -102735157 - MIR3 SINE MIR -17 191 23 1789 134 44 13 chr12 41547780 41548078 -102734411 - AluSx SINE Alu -5 307 1 321 232 31 88 chr12 41548458 41548508 -102733981 + Charlie7 DNA MER1_type 2430 2481 -131 1998 159 6 37 chr12 41548508 41548861 -102733628 - MER2 DNA MER2_type 0 344 3 321 232 31 88 chr12 41548861 41549004 -102733485 + Charlie7 DNA MER1_type 2481 2612 0 1782 158 0 7 chr12 41550269 41550548 -102731941 - AluSx SINE Alu -22 290 14 1827 163 23 10 chr12 41553704 41554010 -102728479 - AluJb SINE Alu -2 310 1 2516 189 49 79 chr12 41554378 41555087 -102727402 - LTR8 LTR ERV1 0 691 4 2062 144 0 0 chr12 41555705 41556003 -102726486 - AluSx SINE Alu -14 298 1 440 221 87 16 chr12 41556797 41556924 -102725565 - MIR SINE MIR -56 206 71 2221 146 100 3 chr12 41557459 41557849 -102724640 - MSTA LTR MaLR 0 428 1 2300 55 55 3 chr12 41557933 41558224 -102724265 + AluY SINE Alu 1 306 -5 275 233 42 100 chr12 41558981 41559048 -102723441 - L1ME4a LINE L1 -29 6092 6033 2102 118 7 10 chr12 41559048 41559345 -102723144 + AluSx SINE Alu 1 296 -16 275 233 42 100 chr12 41559345 41559397 -102723092 - L1ME4a LINE L1 -88 6033 5980 25 31 0 0 chr12 41559426 41559458 -102723031 + AT_rich Low_complexity Low_complexity 1 32 0 217 214 18 18 chr12 41559861 41559917 -102722572 - MER5C DNA MER1_type -201 123 68 224 273 18 0 chr12 41560025 41560080 -102722409 - MER5C DNA MER1_type -267 57 2 23 33 0 0 chr12 41560336 41560366 -102722123 + AT_rich Low_complexity Low_complexity 1 30 0 191 274 96 0 chr12 41560523 41560596 -102721893 - L2 LINE L2 -614 2700 2621 1650 190 3 0 chr12 41561794 41562105 -102720384 - AluSx SINE Alu 0 312 1 1358 169 0 5 chr12 41562863 41563076 -102719413 + AluJo SINE Alu 1 212 -100 196 179 0 71 chr12 41563134 41563190 -102719299 - L2 LINE L2 -332 2981 2930 427 203 0 0 chr12 41563355 41563429 -102719060 - MER2 DNA MER2_type 0 345 272 22 56 0 0 chr12 41563442 41563478 -102719011 + AT_rich Low_complexity Low_complexity 1 36 0 1363 172 26 4 chr12 41563489 41563721 -102718768 + AluJb SINE Alu 3 239 -73 1163 124 9 52 chr12 41563742 41563952 -102718537 - MER2 DNA MER2_type -139 206 6 2224 98 9 0 chr12 41564817 41565133 -102717356 - L1PA11 LINE L1 -1 6173 5855 516 83 6 10 chr12 41565134 41565231 -102717258 + L1PA11 LINE L1 5754 5849 -302 216 361 74 25 chr12 41565554 41565676 -102716813 - L2 LINE L2 -12 3260 3133 545 181 0 38 chr12 41566970 41567075 -102715414 + FLAM_A SINE Alu 10 110 -32 33 0 0 0 chr12 41567095 41567128 -102715361 + AT_rich Low_complexity Low_complexity 1 33 0 1599 107 27 0 chr12 41567186 41567410 -102715079 - MER30 DNA MER1_type 0 230 1 405 283 48 48 chr12 41567713 41567858 -102714631 - L2 LINE L2 0 3272 3128 534 222 70 65 chr12 41568040 41568225 -102714264 + MIR SINE MIR 20 205 -57 245 252 252 10 chr12 41568510 41568613 -102713876 - MER5A DNA MER1_type -22 167 40 660 234 0 72 chr12 41568639 41568806 -102713683 - FAM SINE Alu -19 156 2 187 268 0 0 chr12 41568807 41568848 -102713641 + MER5A DNA MER1_type 149 189 0 2100 121 13 0 chr12 41569616 41569914 -102712575 + AluSq SINE Alu 1 302 -11 26 0 0 0 chr12 41569914 41569940 -102712549 + AT_rich Low_complexity Low_complexity 1 26 0 1092 246 100 126 chr12 41571310 41572063 -102710426 + L2 LINE L2 1212 1944 -1370 557 237 9 0 chr12 41572102 41572216 -102710273 - MIR SINE MIR -69 193 79 334 313 62 22 chr12 41572454 41572633 -102709856 + L1M4b LINE L1 923 1108 -5334 1966 139 12 40 chr12 41572667 41572990 -102709499 - MER1B DNA MER1_type 0 339 26 299 204 0 19 chr12 41572990 41573044 -102709445 - MER1B DNA MER1_type -284 53 1 500 248 78 105 chr12 41573044 41573361 -102709128 + L1M4b LINE L1 1258 1561 -4979 1820 141 0 50 chr12 41573361 41573680 -102708809 - AluJo SINE Alu -9 303 1 500 248 78 105 chr12 41573680 41573772 -102708717 + L1M4b LINE L1 1561 1654 -4886 1361 220 20 30 chr12 41573782 41574086 -102708403 + AluJb SINE Alu 1 301 -11 245 159 0 0 chr12 41574094 41574138 -102708351 + L1M4b LINE L1 2764 2807 -3733 1929 185 98 20 chr12 41574172 41574380 -102708109 + MLT1D LTR MaLR 23 213 -292 2196 111 3 0 chr12 41574380 41574669 -102707820 - AluSx SINE Alu -16 296 7 1929 185 98 20 chr12 41574669 41574908 -102707581 + MLT1D LTR MaLR 213 505 0 1143 264 28 5 chr12 41574943 41575330 -102707159 + L1M4b LINE L1 2844 3239 -3301 207 156 0 0 chr12 41575445 41575477 -102707012 + GA-rich Low_complexity Low_complexity 2 33 0 402 271 181 8 chr12 41575831 41575964 -102706525 + MER5A DNA MER1_type 27 182 -7 1817 164 0 32 chr12 41576070 41576381 -102706108 - AluJo SINE Alu -11 301 1 1872 121 7 34 chr12 41576390 41576688 -102705801 - AluSx SINE Alu -21 291 2 1859 171 3 7 chr12 41576981 41577280 -102705209 + AluJb SINE Alu 3 300 -12 679 198 96 40 chr12 41578164 41578341 -102704148 + AluJo SINE Alu 119 305 -7 241 308 31 0 chr12 41579323 41579388 -102703101 - L2 LINE L2 -6 3307 3241 2395 49 0 55 chr12 41579775 41580101 -102702388 - AluY SINE Alu -3 308 1 450 264 40 85 chr12 41580273 41580474 -102702015 + L2 LINE L2 2823 3014 -299 2194 95 3 0 chr12 41580858 41581141 -102701348 + AluSx SINE Alu 1 284 -28 1035 152 0 0 chr12 41581141 41581319 -102701170 + (TA)n Simple_repeat Simple_repeat 2 179 0 270 176 0 0 chr12 41581319 41581370 -102701119 + (TATATG)n Simple_repeat Simple_repeat 5 55 0 269 219 0 62 chr12 41581371 41581467 -102701022 + L1MC4 LINE L1 6614 6703 -1339 21 0 0 0 chr12 41581467 41581488 -102701001 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr12 41582319 41582349 -102700140 + AT_rich Low_complexity Low_complexity 1 30 0 1631 177 50 0 chr12 41582470 41582752 -102699737 + AluJb SINE Alu 1 296 -16 245 275 14 0 chr12 41583402 41583471 -102699018 - MIR SINE MIR -6 256 187 439 321 60 24 chr12 41583777 41583945 -102698544 - MIR3 SINE MIR -5 203 30 225 0 0 0 chr12 41584619 41584644 -102697845 + (A)n Simple_repeat Simple_repeat 1 25 0 253 205 39 126 chr12 41585420 41585547 -102696942 + L1ME4a LINE L1 5802 5917 -204 1956 150 8 42 chr12 41585560 41585919 -102696570 + MER7A DNA MER2_type 2 346 0 2012 149 0 0 chr12 41585955 41586257 -102696232 + AluSx SINE Alu 1 302 -10 465 166 35 0 chr12 41586257 41586426 -102696063 + (TA)n Simple_repeat Simple_repeat 1 175 0 1546 178 7 18 chr12 41586529 41586805 -102695684 - AluJb SINE Alu -39 273 1 311 367 35 6 chr12 41587258 41587425 -102695064 + L2 LINE L2 124 295 -3019 828 216 113 30 chr12 41587425 41587656 -102694833 + MIR SINE MIR 2 251 -11 565 326 97 28 chr12 41587712 41588074 -102694415 + L2 LINE L2 359 745 -2569 1012 76 8 0 chr12 41588112 41588243 -102694246 + AluSp SINE Alu 1 132 -181 2323 90 0 10 chr12 41588246 41588557 -102693932 + AluSc SINE Alu 1 308 -1 1783 327 169 18 chr12 41588572 41589930 -102692559 + L2 LINE L2 1741 3313 0 190 324 99 9 chr12 41589998 41590109 -102692380 - L2 LINE L2 -28 3285 3165 394 336 75 0 chr12 41590247 41590393 -102692096 - MIR SINE MIR -86 176 20 189 0 0 0 chr12 41590477 41590498 -102691991 + (A)n Simple_repeat Simple_repeat 1 21 0 1966 131 6 34 chr12 41591135 41591456 -102691033 + AluSx SINE Alu 1 312 0 2042 127 7 3 chr12 41592204 41592503 -102689986 - AluSx SINE Alu -12 300 1 21 0 0 0 chr12 41593094 41593115 -102689374 + AT_rich Low_complexity Low_complexity 1 21 0 2237 88 0 0 chr12 41593232 41593516 -102688973 + AluSc SINE Alu 12 295 -14 517 207 107 0 chr12 41594103 41594224 -102688265 - MIR SINE MIR -6 256 123 215 295 0 39 chr12 41594361 41594439 -102688050 + GA-rich Low_complexity Low_complexity 1 75 0 363 250 243 29 chr12 41594477 41594611 -102687878 - MIR SINE MIR -77 185 21 761 173 0 15 chr12 41594611 41594744 -102687745 + FLAM_C SINE Alu 1 131 -2 2251 117 0 0 chr12 41594827 41595135 -102687354 + AluSq SINE Alu 1 308 -5 276 155 42 0 chr12 41595320 41595391 -102687098 + (TA)n Simple_repeat Simple_repeat 1 74 0 568 294 20 56 chr12 41596089 41596286 -102686203 + MIR SINE MIR 26 215 -47 352 268 165 19 chr12 41596605 41596926 -102685563 - L1ME4a LINE L1 -34 6087 5720 244 321 97 36 chr12 41596927 41597123 -102685366 - MIR SINE MIR -20 242 35 180 152 0 0 chr12 41597221 41597254 -102685235 + GA-rich Low_complexity Low_complexity 2 34 0 21 57 0 0 chr12 41597543 41597578 -102684911 + AT_rich Low_complexity Low_complexity 1 35 0 710 165 0 0 chr12 41597774 41597889 -102684600 + FLAM_C SINE Alu 1 115 -18 182 300 29 43 chr12 41598168 41598238 -102684251 + MIR3 SINE MIR 139 207 -1 1223 150 12 12 chr12 41598837 41599077 -102683412 + L1MB3 LINE L1 5934 6173 -10 21 0 0 0 chr12 41599092 41599113 -102683376 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr12 41599552 41599588 -102682901 + AT_rich Low_complexity Low_complexity 1 36 0 347 313 72 53 chr12 41601373 41601638 -102680851 + MARNA DNA Mariner 260 529 -57 29 0 0 0 chr12 41605578 41605607 -102676882 + AT_rich Low_complexity Low_complexity 1 29 0 537 242 157 7 chr12 41605964 41606117 -102676372 - MER5A DNA MER1_type -6 183 8 294 197 318 23 chr12 41606121 41606253 -102676236 + MIR3 SINE MIR 33 203 -5 486 347 40 0 chr12 41607230 41607380 -102675109 - L2 LINE L2 0 3272 3117 35 33 0 17 chr12 41607689 41607730 -102674759 + AT_rich Low_complexity Low_complexity 1 42 -17 1799 122 8 0 chr12 41607730 41607985 -102674504 - AluSg SINE Alu -21 289 33 35 33 0 17 chr12 41607985 41608003 -102674486 + AT_rich Low_complexity Low_complexity 42 59 0 219 114 0 0 chr12 41609503 41609538 -102672951 + (GGA)n Simple_repeat Simple_repeat 2 36 0 2048 105 10 7 chr12 41611553 41611849 -102670640 - Tigger3b DNA MER2_type -1 1230 934 248 51 0 0 chr12 41611847 41611886 -102670603 - AluSx SINE Alu -4 297 259 * 1519 139 0 0 chr12 41611886 41612102 -102670387 - AluSx SINE Alu -96 216 1 933 143 0 0 chr12 41612120 41612267 -102670222 + Tigger1 DNA MER2_type 1 147 -2271 * 1295 118 14 27 chr12 41612265 41612485 -102670004 + Tigger1 DNA MER2_type 2202 2418 0 * 5023 153 39 8 chr12 41612485 41613388 -102669101 - Tigger3b DNA MER2_type -299 932 1 653 239 33 0 chr12 41613471 41613634 -102668855 - MIR SINE MIR -33 229 61 556 266 53 26 chr12 41614391 41614617 -102667872 + L1ME LINE L1 5557 5790 -331 653 173 0 60 chr12 41614875 41615008 -102667481 + FLAM_C SINE Alu 2 126 -7 2092 146 98 26 chr12 41615410 41615664 -102666825 - L1MB7 LINE L1 -20 6164 5867 2045 103 52 3 chr12 41615664 41615955 -102666534 - AluSx SINE Alu -7 305 1 2092 146 98 26 chr12 41615955 41616117 -102666372 - L1MB7 LINE L1 -317 5867 5718 266 304 88 14 chr12 41616537 41616685 -102665804 - L2 LINE L2 0 3313 3155 210 321 0 19 chr12 41616783 41616836 -102665653 - MIR SINE MIR -164 98 47 2139 126 3 0 chr12 41616836 41617178 -102665311 - AluSx SINE Alu 0 343 1 22 0 0 0 chr12 41617197 41617219 -102665270 + AT_rich Low_complexity Low_complexity 1 22 0 284 231 15 0 chr12 41617501 41617566 -102664923 + MIR SINE MIR 180 245 -17 421 273 36 72 chr12 41619924 41620118 -102662371 - MIR SINE MIR -70 192 6 202 247 21 0 chr12 41621449 41621542 -102660947 + CT-rich Low_complexity Low_complexity 4 98 0 275 244 0 11 chr12 41621574 41621664 -102660825 + CT-rich Low_complexity Low_complexity 2 90 0 478 330 30 97 chr12 41621995 41622459 -102660030 - L2 LINE L2 -3 3269 2837 1561 249 86 25 chr12 41622532 41623054 -102659435 - MER68 LTR ERV1 0 562 9 25 0 0 0 chr12 41623883 41623908 -102658581 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr12 41623979 41624009 -102658480 + AT_rich Low_complexity Low_complexity 1 30 0 23 92 0 0 chr12 41625002 41625067 -102657422 + AT_rich Low_complexity Low_complexity 1 65 0 23 0 0 0 chr12 41625430 41625453 -102657036 + AT_rich Low_complexity Low_complexity 1 23 0 2073 91 7 39 chr12 41625457 41625764 -102656725 + AluY SINE Alu 1 297 -14 562 276 13 13 chr12 41626353 41626509 -102655980 - Charlie8 DNA MER1_type -2159 258 103 2338 81 0 0 chr12 41626973 41627269 -102655220 - AluY SINE Alu -15 296 1 248 224 106 35 chr12 41627334 41627419 -102655070 - L2 LINE L2 -36 3277 3187 203 88 29 0 chr12 41627742 41627776 -102654713 + (TTC)n Simple_repeat Simple_repeat 2 36 0 836 186 157 30 chr12 41627795 41628026 -102654463 + MIR SINE MIR 1 262 0 25 0 0 0 chr12 41628510 41628535 -102653954 + AT_rich Low_complexity Low_complexity 1 25 0 254 203 0 16 chr12 41629122 41629186 -102653303 + (TG)n Simple_repeat Simple_repeat 2 64 0 2222 121 7 0 chr12 41630137 41630444 -102652045 - AluSx SINE Alu -3 309 1 795 277 163 27 chr12 41631450 41631967 -102650522 - Charlie7 DNA MER1_type -1940 672 86 2430 44 3 3 chr12 41632101 41632397 -102650092 - AluY SINE Alu -15 296 1 224 66 58 0 chr12 41632556 41632594 -102649895 + MIR SINE MIR 105 145 -63 605 309 57 68 chr12 41636976 41637345 -102645144 - L3 LINE CR1 -219 1358 994 412 340 94 19 chr12 41637491 41637703 -102644786 - L3 LINE CR1 -975 602 375 3542 84 34 4 chr12 41638427 41638962 -102643527 - L1MA2 LINE L1 0 6304 5754 22 35 0 0 chr12 41639715 41639744 -102642745 + AT_rich Low_complexity Low_complexity 1 29 0 607 329 32 20 chr12 41640015 41640261 -102642228 - MIR SINE MIR -1 261 13 21 0 0 0 chr12 41640881 41640902 -102641587 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 41641244 41641267 -102641222 + AT_rich Low_complexity Low_complexity 1 23 0 2089 96 3 64 chr12 41642695 41643008 -102639481 - AluSx SINE Alu -16 296 3 283 288 99 27 chr12 41643178 41643289 -102639200 - L2 LINE L2 -5 3267 3149 26 0 0 0 chr12 41643907 41643933 -102638556 + AT_rich Low_complexity Low_complexity 1 26 0 208 242 30 91 chr12 41644166 41644265 -102638224 - L2 LINE L2 0 3313 3221 525 180 0 0 chr12 41644269 41644358 -102638131 - AluJ/FLAM SINE Alu -223 89 1 233 322 11 0 chr12 41645117 41645204 -102637285 + L1MC4 LINE L1 6618 6705 -1337 906 174 7 7 chr12 41645557 41645706 -102636783 + FAM SINE Alu 10 158 -27 2245 111 0 0 chr12 41645707 41646013 -102636476 - AluSx SINE Alu -6 306 1 227 263 0 0 chr12 41646355 41646412 -102636077 + T-rich Low_complexity Low_complexity 4 60 0 285 301 110 72 chr12 41646605 41646841 -102635648 - L2 LINE L2 -943 2371 2127 200 160 10 90 chr12 41647590 41647638 -102634851 + A-rich Low_complexity Low_complexity 2 40 -53 866 198 24 0 chr12 41647638 41647805 -102634684 + FAM SINE Alu 5 175 0 200 160 10 90 chr12 41647805 41647856 -102634633 + A-rich Low_complexity Low_complexity 39 93 0 684 236 157 21 chr12 41650069 41650349 -102632140 - L2 LINE L2 0 3313 2996 5899 102 13 4 chr12 41650977 41651962 -102630527 - L1PA14 LINE L1 -1 6160 5165 732 212 0 20 chr12 41652097 41652243 -102630246 - MIR SINE MIR -5 257 115 1415 306 65 28 chr12 41652260 41653107 -102629382 - L1MEc LINE L1 -5484 912 35 302 149 0 0 chr12 41653110 41653157 -102629332 + L2 LINE L2 2328 2374 -940 29 47 0 0 chr12 41653192 41653235 -102629254 + AT_rich Low_complexity Low_complexity 1 43 0 4483 16 2 0 chr12 41653363 41653877 -102628612 - L1PA3 LINE L1 -17 6138 5624 1603 302 89 23 chr12 41653877 41654683 -102627806 + L2 LINE L2 2358 3224 -89 23 33 0 0 chr12 41654686 41654716 -102627773 + AT_rich Low_complexity Low_complexity 1 30 0 2322 81 0 3 chr12 41654727 41655024 -102627465 + AluY SINE Alu 1 296 -15 198 0 0 0 chr12 41655048 41655070 -102627419 + (T)n Simple_repeat Simple_repeat 1 22 0 2061 96 27 23 chr12 41655102 41655403 -102627086 + AluSc SINE Alu 5 306 -3 285 189 57 0 chr12 41655409 41655462 -102627027 + L2 LINE L2 3214 3269 -3 205 299 279 7 chr12 41655537 41655691 -102626798 + MIR3 SINE MIR 1 196 -12 624 243 133 26 chr12 41656190 41656416 -102626073 + MIR SINE MIR 13 262 0 185 279 261 9 chr12 41658696 41658807 -102623682 - L2 LINE L2 0 3313 3175 * 186 279 27 45 chr12 41658801 41658912 -102623577 - MIR SINE MIR 0 262 154 204 129 0 0 chr12 41659726 41659757 -102622732 - MIR SINE MIR 0 262 232 292 171 0 79 chr12 41659800 41659876 -102622613 - HsTC2 DNA Tc2 -1828 70 1 245 265 71 0 chr12 41660354 41660452 -102622037 + LTR67 LTR ERVL 434 538 -19 8842 108 22 2 chr12 41661491 41662742 -102619747 - HSMAR1 DNA Mariner -2 1285 10 826 287 51 69 chr12 41662996 41663408 -102619081 + MLT1J LTR MaLR 1 347 -103 694 238 114 21 chr12 41663408 41663601 -102618888 - MER58C DNA MER1_type -4 211 1 826 287 51 69 chr12 41663601 41663681 -102618808 + MLT1J LTR MaLR 347 427 -23 365 273 50 0 chr12 41663821 41663920 -102618569 + MER91B DNA MER1_type 27 130 -60 31 0 0 0 chr12 41664253 41664284 -102618205 + AT_rich Low_complexity Low_complexity 1 31 0 2341 35 42 3 chr12 41664603 41664887 -102617602 + AluY SINE Alu 1 295 -16 1078 306 87 16 chr12 41664936 41665440 -102617049 + LTR67 LTR ERVL 2 541 -16 612 210 119 45 chr12 41666308 41666484 -102616005 - MER5A DNA MER1_type 0 189 1 258 320 25 0 chr12 41666785 41666907 -102615582 + MLT1L LTR MaLR 491 615 0 531 264 23 8 chr12 41668037 41668166 -102614323 + L2 LINE L2 3136 3266 -6 7103 201 63 14 chr12 41669010 41670754 -102611735 - L1MCa LINE L1 -2579 3847 2190 1629 177 50 3 chr12 41670754 41671037 -102611452 - AluSx SINE Alu -16 296 1 7103 201 63 14 chr12 41671037 41671114 -102611375 - L1MCa LINE L1 -4236 2190 2118 1972 116 0 79 chr12 41671114 41671432 -102611057 - AluSc SINE Alu -14 295 3 7103 201 63 14 chr12 41671432 41673090 -102609399 - L1MCa LINE L1 -4308 2118 104 345 199 53 93 chr12 41673157 41673308 -102609181 - MER112 DNA MER1_type -97 163 19 1620 185 37 16 chr12 41674538 41674917 -102607572 - Charlie5 DNA MER1_type 0 2624 2238 718 167 0 0 chr12 41674929 41675049 -102607440 - MER3 DNA MER1_type -42 167 48 24 32 0 0 chr12 41675822 41675853 -102606636 + AT_rich Low_complexity Low_complexity 1 31 0 319 347 71 34 chr12 41676712 41676951 -102605538 - L2 LINE L2 -514 2800 2553 198 0 0 0 chr12 41677400 41677422 -102605067 + (A)n Simple_repeat Simple_repeat 1 22 0 427 321 22 0 chr12 41678526 41678660 -102603829 + MIR3 SINE MIR 67 203 -5 237 224 105 13 chr12 41678832 41678908 -102603581 - MIR3 SINE MIR -8 200 118 514 282 186 30 chr12 41678939 41679240 -102603249 - L2 LINE L2 -42 3271 2924 248 160 0 40 chr12 41679289 41679339 -102603150 - L2 LINE L2 0 3313 3266 25 51 0 0 chr12 41679510 41679549 -102602940 + AT_rich Low_complexity Low_complexity 1 39 0 3613 166 39 79 chr12 41680279 41681105 -102601384 - MER54B LTR ERVL 0 793 1 181 291 43 92 chr12 41681215 41681356 -102601133 - L2 LINE L2 -303 2969 2836 570 282 39 6 chr12 41681554 41681735 -102600754 - Charlie8 DNA MER1_type -2195 222 36 317 379 115 14 chr12 41681762 41682266 -102600223 - L2 LINE L2 -553 2761 2207 214 310 14 0 chr12 41682261 41682332 -102600157 - L2 LINE L2 0 3272 3201 * 801 144 0 16 chr12 41682441 41682566 -102599923 - Tigger1 DNA MER2_type 0 2418 2296 271 30 0 0 chr12 41682643 41682676 -102599813 - Tigger1 DNA MER2_type -125 2293 2261 657 122 73 0 chr12 41682715 41682838 -102599651 - Tigger1 DNA MER2_type -121 2297 2166 1797 166 3 3 chr12 41883520 41883822 -102398667 + AluJo SINE Alu 1 302 -10 236 210 16 0 chr12 41884090 41884152 -102398337 - L1MCa LINE L1 -4358 2068 2006 227 304 47 0 chr12 41884176 41884347 -102398142 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 226 322 23 0 chr12 41884384 41884471 -102398018 + L1MC4 LINE L1 6615 6703 -1339 * 318 256 0 0 chr12 41884441 41884531 -102397958 + L1MC4 LINE L1 6614 6703 -1339 2177 61 0 0 chr12 41884547 41884809 -102397680 - AluY SINE Alu -6 305 44 742 191 0 0 chr12 41884893 41885019 -102397470 + FLAM_A SINE Alu 1 126 -7 205 182 15 30 chr12 41885183 41885249 -102397240 + CT-rich Low_complexity Low_complexity 3 67 0 2262 101 0 3 chr12 41886460 41886757 -102395732 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr12 41887069 41887092 -102395397 + AT_rich Low_complexity Low_complexity 1 23 0 305 235 88 28 chr12 41888281 41888420 -102394069 + MIR SINE MIR 25 175 -66 268 221 124 0 chr12 41889170 41889283 -102393206 - L1ME LINE L1 -239 5882 5756 636 212 14 94 chr12 41889552 41889764 -102392725 - MLT1D LTR MaLR -310 195 1 21 0 0 0 chr12 41889937 41889958 -102392531 + AT_rich Low_complexity Low_complexity 1 21 0 2257 103 3 0 chr12 41890270 41890570 -102391919 + AluSc SINE Alu 1 301 -8 22 88 0 0 chr12 41891165 41891222 -102391267 + AT_rich Low_complexity Low_complexity 1 57 0 26 0 0 0 chr12 41891288 41891314 -102391175 + AT_rich Low_complexity Low_complexity 1 26 0 2071 131 0 0 chr12 41891575 41891887 -102390602 + AluSx SINE Alu 1 312 0 306 278 10 21 chr12 41893141 41893238 -102389251 + MIR SINE MIR 164 259 -3 185 208 151 19 chr12 41894295 41894348 -102388141 - MER5B DNA MER1_type -115 63 4 274 268 0 0 chr12 41895359 41895415 -102387074 + AluS SINE Alu 233 288 -12 300 269 90 8 chr12 41895421 41895555 -102386934 + L1 LINE L1 4173 4317 -1829 1309 108 37 23 chr12 41895774 41895988 -102386501 + L1PA10 LINE L1 5948 6164 -4 21 36 0 0 chr12 41895988 41896016 -102386473 + AT_rich Low_complexity Low_complexity 1 28 0 205 329 0 38 chr12 41896776 41896855 -102385634 - L2 LINE L2 -4 3268 3193 407 276 33 53 chr12 41898504 41898656 -102383833 + MIR SINE MIR 36 184 -78 566 260 94 10 chr12 41899342 41899534 -102382955 - L1ME1 LINE L1 -7 6159 5952 * 695 243 82 22 chr12 41899531 41899798 -102382691 - L1MEc LINE L1 -2607 3608 3326 1023 254 122 18 chr12 41899808 41900247 -102382242 - MLT1D LTR MaLR 0 467 1 2247 260 96 31 chr12 41900256 41901793 -102380696 - L1MEc LINE L1 -2908 3307 36 246 257 14 0 chr12 41903577 41903647 -102378842 + MER94 DNA DNA 28 98 -36 252 86 0 0 chr12 41903809 41903844 -102378645 + (CA)n Simple_repeat Simple_repeat 2 36 0 357 301 29 29 chr12 41905187 41905323 -102377166 - L2 LINE L2 -58 3255 3120 22 35 0 0 chr12 41907960 41907989 -102374500 + AT_rich Low_complexity Low_complexity 1 29 0 1700 162 23 13 chr12 41908874 41909176 -102373313 + AluJb SINE Alu 1 305 -7 21 57 0 0 chr12 41910112 41910147 -102372342 + AT_rich Low_complexity Low_complexity 1 35 0 2653 164 15 8 chr12 41910460 41910482 -102372007 - L1MB4 LINE L1 0 6180 6160 264 59 0 0 chr12 41910482 41910516 -102371973 + (TG)n Simple_repeat Simple_repeat 1 34 0 204 40 0 0 chr12 41910519 41910544 -102371945 + (TA)n Simple_repeat Simple_repeat 1 25 0 2653 164 15 8 chr12 41910544 41911040 -102371449 - L1MB4 LINE L1 -21 6159 5654 309 223 134 76 chr12 41911499 41911656 -102370833 - MLT1K LTR MaLR -12 576 411 294 287 24 85 chr12 41911758 41911922 -102370567 - MLT1K LTR MaLR -343 245 92 449 369 65 0 chr12 41913400 41913614 -102368875 - MIR SINE MIR -30 232 5 204 125 0 0 chr12 41914000 41914032 -102368457 + (CATA)n Simple_repeat Simple_repeat 2 33 0 940 163 224 37 chr12 41914978 41915224 -102367265 + AluJo SINE Alu 1 292 -10 192 77 0 0 chr12 41915249 41915275 -102367214 + (TG)n Simple_repeat Simple_repeat 2 27 0 543 95 107 0 chr12 41915340 41915424 -102367065 - AluSc SINE Alu -15 294 202 334 82 20 20 chr12 41915424 41915473 -102367016 - AluJb SINE Alu -131 171 123 181 219 0 0 chr12 41916135 41916167 -102366322 + L2 LINE L2 3226 3257 -15 1255 244 159 0 chr12 41916370 41916805 -102365684 - MLT2B1 LTR ERVL 0 520 17 397 298 157 54 chr12 41916827 41917196 -102365293 + L2 LINE L2 2862 3268 -4 391 254 7 56 chr12 41918132 41918274 -102364215 - MARNA DNA Mariner -182 404 270 347 324 100 28 chr12 41919257 41919542 -102362947 - L1M4 LINE L1 -993 5153 4841 640 62 0 0 chr12 41919542 41919622 -102362867 + MADE1 DNA Mariner 1 80 0 347 324 100 28 chr12 41919622 41919657 -102362832 - L1M4 LINE L1 -1305 4841 4810 525 229 84 12 chr12 41919744 41919910 -102362579 - L1MEc LINE L1 -6179 217 40 568 307 112 45 chr12 41919912 41920473 -102362016 - L1MDa LINE L1 -3056 3484 2886 310 293 130 55 chr12 41920549 41920853 -102361636 - L1MDa LINE L1 -3904 2636 2446 182 36 0 36 chr12 41921888 41921916 -102360573 + (TTA)n Simple_repeat Simple_repeat 3 29 0 7326 36 1 1 chr12 41922911 41924420 -102358069 - L1PA5 LINE L1 -34 6120 4612 28 71 0 0 chr12 41925161 41925217 -102357272 + AT_rich Low_complexity Low_complexity 1 56 0 21 57 0 0 chr12 41925413 41925448 -102357041 + AT_rich Low_complexity Low_complexity 1 35 0 2112 111 7 26 chr12 41925771 41926077 -102356412 + AluSx SINE Alu 1 300 -12 536 95 51 0 chr12 41926077 41926214 -102356275 + (TA)n Simple_repeat Simple_repeat 1 144 0 2134 286 100 28 chr12 41926486 41926899 -102355590 + L2 LINE L2 1354 1736 -1578 2223 93 4 0 chr12 41926899 41927179 -102355310 + AluSp SINE Alu 1 281 -32 189 0 0 0 chr12 41927179 41927200 -102355289 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 2134 286 100 28 chr12 41927200 41927844 -102354645 + L2 LINE L2 1735 2488 -826 180 256 44 33 chr12 41927861 41927951 -102354538 + L2 LINE L2 3119 3209 -104 330 293 85 0 chr12 41928212 41928318 -102354171 - MIR SINE MIR -21 241 127 668 191 0 38 chr12 41930684 41930815 -102351674 - FLAM_A SINE Alu -7 126 1 21 0 0 0 chr12 41930875 41930896 -102351593 + AT_rich Low_complexity Low_complexity 1 21 0 384 255 28 0 chr12 41931298 41931404 -102351085 - MIR SINE MIR -91 171 63 699 288 98 14 chr12 41931652 41931947 -102350542 - MARNA DNA Mariner -48 538 219 434 298 53 18 chr12 41932021 41932246 -102350243 + L2 LINE L2 3081 3313 0 302 192 68 55 chr12 41932255 41932328 -102350161 - MARNA DNA Mariner -381 205 132 32223 31 12 1 chr12 41932434 41938457 -102344032 + L1PA2 LINE L1 8 6152 -3 1412 189 52 11 chr12 41939994 41940280 -102342209 - MLT1A1 LTR MaLR 0 365 68 278 86 14 129 chr12 41940343 41940413 -102342076 - MLT1A1 LTR MaLR -303 62 1 809 156 170 0 chr12 41940549 41940761 -102341728 - MER5C DNA MER1_type -4 320 73 770 259 30 55 chr12 41941439 41941675 -102340814 + L2 LINE L2 2214 2443 -871 215 260 0 0 chr12 41941675 41941725 -102340764 - L2 LINE L2 -1067 2247 2198 642 330 33 31 chr12 41942138 41942587 -102339902 - L1MC/D LINE L1 -2046 5762 5313 480 158 17 8 chr12 41942589 41942709 -102339780 + GA-rich Low_complexity Low_complexity 2 122 0 230 240 0 0 chr12 41942794 41942844 -102339645 + GA-rich Low_complexity Low_complexity 3 52 0 1183 258 104 38 chr12 41942915 41943653 -102338836 + L2 LINE L2 2440 3313 0 381 260 58 45 chr12 41944295 41944449 -102338040 + L2 LINE L2 3158 3313 0 22 0 0 0 chr12 41948032 41948054 -102334435 + AT_rich Low_complexity Low_complexity 1 22 0 2359 67 20 0 chr12 41948193 41948491 -102333998 + AluY SINE Alu 2 305 -6 351 253 111 16 chr12 41948757 41948928 -102333561 + MIR3 SINE MIR 14 208 -32 1580 174 111 3 chr12 41949233 41949584 -102332905 - L1MA5 LINE L1 -4 6296 5908 2153 111 60 28 chr12 41949747 41950100 -102332389 + THE1B LTR MaLR 1 364 0 5339 109 1 0 chr12 41950136 41950861 -102331628 + THE1B-int LTR MaLR 136 861 -719 4482 143 2 23 chr12 41950861 41951634 -102330855 + L1PB1 LINE L1 4381 5169 -982 2305 92 0 3 chr12 41951634 41951928 -102330561 + AluY SINE Alu 1 293 -18 4482 143 2 23 chr12 41951928 41952499 -102329990 + L1PB1 LINE L1 5169 6021 -130 3205 84 0 2 chr12 41952505 41952919 -102329570 + THE1B-int LTR MaLR 1168 1580 0 836 129 114 0 chr12 41952919 41953050 -102329439 + THE1B LTR MaLR 1 146 -218 4479 49 17 57 chr12 41953050 41954140 -102328349 + MER11A LTR ERVK 1 1266 0 1378 134 25 25 chr12 41954140 41954364 -102328125 + THE1B LTR MaLR 139 362 -2 1964 168 24 24 chr12 41954578 41954958 -102327531 - MLT1B LTR MaLR 0 390 11 345 349 48 7 chr12 41955549 41955745 -102326744 - MIR3 SINE MIR -41 221 13 709 287 77 5 chr12 41956261 41956470 -102326019 - MIR SINE MIR -16 246 23 346 323 46 0 chr12 41956681 41956811 -102325678 - L2 LINE L2 0 3272 3137 297 256 47 35 chr12 41957841 41957927 -102324562 - MIR SINE MIR -70 192 106 941 96 0 0 chr12 41957927 41958052 -102324437 + AluSq SINE Alu 131 255 -58 1568 162 4 0 chr12 41958152 41958405 -102324084 - AluSq SINE Alu -59 254 1 2242 114 3 3 chr12 41958428 41958735 -102323754 - AluSx SINE Alu -3 309 3 1628 176 24 30 chr12 41958864 41959159 -102323330 - AluJo SINE Alu -19 293 1 735 192 0 8 chr12 41959159 41959289 -102323200 - FRAM SINE Alu -14 162 34 262 77 0 0 chr12 41959307 41959346 -102323143 + L1MA4A LINE L1 6234 6272 -31 247 125 0 0 chr12 41959372 41959412 -102323077 - L1 LINE L1 -2211 3935 3896 1967 114 4 0 chr12 41959487 41959749 -102322740 - AluSq SINE Alu -50 263 1 229 350 10 21 chr12 41960141 41960238 -102322251 + MIR SINE MIR 38 133 -75 2526 35 0 3 chr12 41960375 41960664 -102321825 + AluY SINE Alu 13 300 -11 319 200 11 11 chr12 41963380 41963475 -102319014 + (TA)n Simple_repeat Simple_repeat 1 95 0 2549 109 2 48 chr12 41965395 41965788 -102316701 - THE1C LTR MaLR 0 375 1 201 147 0 0 chr12 41966069 41966103 -102316386 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 477 0 0 0 chr12 41966106 41966159 -102316330 + (TA)n Simple_repeat Simple_repeat 1 53 0 4138 50 0 2 chr12 41966163 41966683 -102315806 - L1PA5 LINE L1 -13 6141 5623 3653 254 91 54 chr12 41966783 41967338 -102315151 + L1ME2 LINE L1 2021 2554 -3661 412 176 66 0 chr12 41967338 41967429 -102315060 + L1MB3 LINE L1 6086 6182 -1 3653 254 91 54 chr12 41967429 41967646 -102314843 + L1ME2 LINE L1 2554 2762 -3453 1961 133 40 7 chr12 41967646 41967947 -102314542 - AluJb SINE Alu -1 311 1 3653 254 91 54 chr12 41967947 41968755 -102313734 + L1ME2 LINE L1 2762 3669 -2546 1626 181 0 38 chr12 41968755 41969069 -102313420 - AluJb SINE Alu -10 302 1 3653 254 91 54 chr12 41969069 41969604 -102312885 + L1ME2 LINE L1 3669 4183 -2032 587 233 97 0 chr12 41969612 41969788 -102312701 + L1ME2 LINE L1 4699 4891 -1324 * 1141 232 53 10 chr12 41969783 41970085 -102312404 + L1ME2 LINE L1 5909 6223 -10 188 299 65 26 chr12 41970281 41970358 -102312131 + L2 LINE L2 3149 3228 -44 225 333 0 15 chr12 41971460 41971526 -102310963 + L2 LINE L2 3204 3268 -4 626 276 116 0 chr12 41973200 41973381 -102309108 + MIR SINE MIR 35 236 -26 582 207 39 62 chr12 41974210 41974389 -102308100 + MER5B DNA MER1_type 4 178 0 180 309 0 0 chr12 41974816 41974858 -102307631 - MIR SINE MIR -71 191 150 2124 112 0 0 chr12 41974885 41975163 -102307326 + AluSg SINE Alu 1 278 -32 183 42 0 0 chr12 41975163 41975187 -102307302 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 240 200 0 0 chr12 41975626 41975681 -102306808 + CT-rich Low_complexity Low_complexity 2 56 0 189 362 64 11 chr12 41977019 41977113 -102305376 - MIR3 SINE MIR -2 206 108 293 247 21 0 chr12 41978176 41978273 -102304216 + (TA)n Simple_repeat Simple_repeat 2 100 0 2354 94 0 0 chr12 41979310 41979608 -102302881 - AluSx SINE Alu -14 298 1 24 67 0 0 chr12 41979723 41979768 -102302721 + AT_rich Low_complexity Low_complexity 1 45 0 688 273 154 24 chr12 41981658 41981988 -102300501 - L2 LINE L2 -5 3308 2936 2041 132 7 3 chr12 41983556 41983851 -102298638 - AluSx SINE Alu -16 296 1 1652 144 93 34 chr12 41985829 41986183 -102296306 - THE1C LTR MaLR 0 375 1 595 202 53 140 chr12 41988060 41988303 -102294186 - MER58A DNA MER1_type -1 223 2 249 159 0 0 chr12 41988383 41988427 -102294062 + T-rich Low_complexity Low_complexity 1 44 0 409 141 0 0 chr12 41988874 41988938 -102293551 - MER92C LTR ERV1 0 554 491 222 282 13 64 chr12 41989147 41989225 -102293264 + L2 LINE L2 3187 3260 -12 398 277 39 68 chr12 41990429 41990635 -102291854 - MIR SINE MIR -14 248 49 229 304 154 10 chr12 41990658 41990859 -102291630 - L2 LINE L2 -83 3230 3001 2134 121 3 7 chr12 41991616 41991913 -102290576 + AluSp SINE Alu 6 301 -12 217 319 75 38 chr12 41992512 41992672 -102289817 + MIR SINE MIR 91 256 -6 747 229 104 10 chr12 41992869 41993061 -102289428 + MIR SINE MIR 32 241 -21 215 260 0 0 chr12 41993032 41993082 -102289407 + L2 LINE L2 3258 3307 -6 * 828 216 24 0 chr12 41994449 41994616 -102287873 + MER45A DNA AcHobo 1 171 -7 1378 126 0 86 chr12 41994675 41994930 -102287559 + L1PA16 LINE L1 5930 6162 -4 846 192 67 39 chr12 41995033 41995241 -102287248 + MER20 DNA MER1_type 6 219 0 1739 184 0 19 chr12 41996670 41996985 -102285504 + AluJo SINE Alu 2 310 -2 540 295 68 0 chr12 41997405 41997595 -102284894 - L1ME3A LINE L1 -341 5829 5627 2119 114 0 20 chr12 41997772 41998078 -102284411 - AluY SINE Alu -11 300 1 400 268 137 32 chr12 41998578 41998768 -102283721 - MIR SINE MIR -7 255 46 498 349 16 23 chr12 41999885 42000143 -102282346 - MIR SINE MIR -2 260 5 286 187 415 0 chr12 42000417 42000540 -102281949 - MER5B DNA MER1_type -2 176 3 506 234 0 0 chr12 42000553 42000647 -102281842 + MER2 DNA MER2_type 8 101 -244 747 234 38 16 chr12 42000680 42000864 -102281625 - MER5A DNA MER1_type 0 189 2 1968 132 51 31 chr12 42001350 42001705 -102280784 + Tigger2a DNA MER2_type 5 366 -68 342 271 0 21 chr12 42001726 42001822 -102280667 + MSTD LTR MaLR 270 363 -33 1185 168 0 45 chr12 42001822 42001919 -102280570 + MER2 DNA MER2_type 1 101 -244 2090 137 3 0 chr12 42001919 42002219 -102280270 + AluSq SINE Alu 1 301 -12 1185 168 0 45 chr12 42002219 42002341 -102280148 + MER2 DNA MER2_type 101 210 -135 232 264 23 23 chr12 42004309 42004396 -102278093 + CT-rich Low_complexity Low_complexity 2 88 0 1825 193 112 30 chr12 42008441 42008871 -102273618 + MER68 LTR ERV1 1 465 -97 258 146 0 0 chr12 42008875 42008916 -102273573 + MER77 LTR ERV1 565 605 0 318 216 198 18 chr12 42009099 42009210 -102273279 - MLT1K LTR MaLR -19 569 439 21 0 0 0 chr12 42010151 42010172 -102272317 + AT_rich Low_complexity Low_complexity 1 21 0 13768 29 2 1 chr12 42010577 42012991 -102269498 - L1PA3 LINE L1 -3 6152 3736 8253 35 1 0 chr12 42012991 42014008 -102268481 + L1PA3 LINE L1 2693 3713 -2433 316 292 142 9 chr12 42014672 42014905 -102267584 + L1ME LINE L1 5560 5823 -298 259 176 59 44 chr12 42014915 42014983 -102267506 - MIR SINE MIR 0 262 194 677 223 6 40 chr12 42015236 42015411 -102267078 - MER3 DNA MER1_type -87 122 1 303 333 0 0 chr12 42016318 42016408 -102266081 - L1MC4 LINE L1 -1339 6703 6614 446 172 21 0 chr12 42016408 42016501 -102265988 + (CATATA)n Simple_repeat Simple_repeat 2 96 0 2467 82 0 0 chr12 42016672 42016977 -102265512 + AluY SINE Alu 1 305 -6 8372 204 53 63 chr12 42017545 42022913 -102259576 + L1PB1 LINE L1 306 5860 -1002 5746 100 9 41 chr12 42022916 42023487 -102259002 + L1PB1 LINE L1 5922 6452 -415 216 0 0 0 chr12 42023487 42023511 -102258978 + (TA)n Simple_repeat Simple_repeat 2 25 0 5746 100 9 41 chr12 42023511 42023907 -102258582 + L1PB1 LINE L1 6452 6859 -8 32 26 0 0 chr12 42023911 42023950 -102258539 + AT_rich Low_complexity Low_complexity 1 39 0 233 338 132 29 chr12 42024594 42024730 -102257759 + MIR3 SINE MIR 7 156 -52 186 348 0 0 chr12 42024906 42024952 -102257537 - L2 LINE L2 -16 3297 3252 712 304 112 10 chr12 42025354 42025657 -102256832 - LTR16C LTR ERVL 0 491 158 268 307 71 31 chr12 42026283 42026410 -102256079 + MIR SINE MIR 23 154 -108 383 292 64 43 chr12 42027644 42027877 -102254612 + L2 LINE L2 2173 2410 -904 846 153 15 0 chr12 42029387 42029524 -102252965 - BC200 scRNA scRNA -61 139 1 249 349 37 9 chr12 42030667 42030776 -102251713 + MIR SINE MIR 32 143 -119 345 267 27 67 chr12 42030796 42030946 -102251543 + L2 LINE L2 2381 2524 -790 226 227 45 45 chr12 42030963 42031029 -102251460 + MER119 DNA MER1_type 28 93 -490 525 170 28 19 chr12 42031064 42031170 -102251319 + MER119 DNA MER1_type 477 583 0 596 344 120 20 chr12 42031199 42031404 -102251085 + L2 LINE L2 2552 2735 -578 1856 118 4 11 chr12 42031404 42031667 -102250822 - AluSx SINE Alu -31 281 21 596 344 120 20 chr12 42031667 42032148 -102250341 + L2 LINE L2 2735 3307 -6 28 79 0 0 chr12 42032712 42032775 -102249714 + AT_rich Low_complexity Low_complexity 1 63 0 886 249 101 42 chr12 42033906 42034311 -102248178 - HAL1 LINE L1 0 2507 2079 2389 96 0 0 chr12 42034471 42034783 -102247706 - AluSx SINE Alu 0 312 1 320 276 125 73 chr12 42034797 42035064 -102247425 - HAL1 LINE L1 -476 2031 1735 2268 98 0 0 chr12 42035064 42035361 -102247128 - AluSg SINE Alu -13 297 1 320 276 125 73 chr12 42035361 42035492 -102246997 - HAL1 LINE L1 -772 1735 1612 479 285 164 29 chr12 42035556 42036001 -102246488 - HAL1 LINE L1 -1991 516 12 1983 137 7 3 chr12 42037595 42037879 -102244610 - AluSx SINE Alu -26 286 2 1537 90 5 0 chr12 42038138 42038359 -102244130 - AluSg/x SINE Alu 0 301 80 268 362 149 30 chr12 42038494 42038856 -102243633 + L2 LINE L2 2866 3270 -2 183 357 71 40 chr12 42040275 42040401 -102242088 - L2 LINE L2 -509 2805 2676 958 133 0 0 chr12 42040539 42040667 -102241822 + AluSq/x SINE Alu 4 131 -182 234 314 0 35 chr12 42040688 42040774 -102241715 + MIR SINE MIR 108 190 -72 2675 150 70 2 chr12 42040941 42041442 -102241047 + L1MB8 LINE L1 5399 5933 -245 990 121 0 7 chr12 42041544 42041693 -102240796 + AluSc SINE Alu 155 302 -7 224 287 84 49 chr12 42041702 42041845 -102240644 - MIR3 SINE MIR -22 186 39 25 31 0 0 chr12 42042656 42042688 -102239801 + AT_rich Low_complexity Low_complexity 1 32 0 333 225 108 8 chr12 42044070 42044190 -102238299 - L1ME4a LINE L1 -27 6094 5963 207 133 0 0 chr12 42044366 42044411 -102238078 + (A)n Simple_repeat Simple_repeat 1 45 0 725 108 0 0 chr12 42045287 42045398 -102237091 + AluY SINE Alu 201 311 0 23 33 0 0 chr12 42045758 42045788 -102236701 + AT_rich Low_complexity Low_complexity 1 30 0 435 19 0 0 chr12 42046431 42046483 -102236006 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 225 169 17 34 chr12 42047707 42047766 -102234723 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 263 68 114 0 chr12 42047778 42047822 -102234667 - MER21A LTR ERV1 -7 924 876 745 190 35 0 chr12 42047824 42047966 -102234523 - MER21A LTR ERV1 -257 674 528 430 284 7 61 chr12 42048378 42048526 -102233963 + MIR SINE MIR 51 190 -72 268 391 28 34 chr12 42049174 42049353 -102233136 + L2 LINE L2 1159 1336 -1978 518 316 114 5 chr12 42049508 42049701 -102232788 - MIR SINE MIR -12 250 37 24 32 0 0 chr12 42049920 42049951 -102232538 + AT_rich Low_complexity Low_complexity 1 31 0 2346 111 0 0 chr12 42050340 42050647 -102231842 - AluSx SINE Alu -3 309 3 205 305 126 21 chr12 42050691 42050786 -102231703 + L2 LINE L2 3197 3301 -12 194 319 44 69 chr12 42052274 42052434 -102230055 - MER5A DNA MER1_type 0 189 34 * 283 317 29 19 chr12 42052349 42052453 -102230036 + MER5A DNA MER1_type 81 185 -4 215 315 280 28 chr12 42054028 42054171 -102228318 - MIR SINE MIR -56 206 28 960 253 68 0 chr12 42054202 42054439 -102228050 + MIR SINE MIR 10 262 0 381 329 94 51 chr12 42054836 42055393 -102227096 - L2 LINE L2 0 3272 2653 2041 171 110 78 chr12 42056351 42056861 -102225628 - MER21A LTR ERV1 -387 544 19 465 62 0 0 chr12 42056863 42056928 -102225561 + (TGGA)n Simple_repeat Simple_repeat 4 68 0 253 260 126 31 chr12 42057398 42057525 -102224964 + L1MEc LINE L1 1505 1643 -4753 535 316 103 42 chr12 42057704 42058306 -102224183 + L1MEc LINE L1 1914 2516 -3699 1000 221 0 19 chr12 42058308 42058516 -102223973 - MER2 DNA MER2_type -141 204 1 685 292 63 60 chr12 42058516 42058947 -102223542 + L1M4 LINE L1 4559 4990 -1156 264 230 46 0 chr12 42060738 42060751 -102221738 + (TA)n Simple_repeat Simple_repeat 2 13 -79 1603 192 0 17 chr12 42060751 42061043 -102221446 + AluJo SINE Alu 1 287 -25 264 230 46 0 chr12 42061043 42061116 -102221373 + (TA)n Simple_repeat Simple_repeat 13 92 0 1831 150 7 28 chr12 42062086 42062392 -102220097 + AluJb SINE Alu 2 301 0 335 314 131 11 chr12 42062570 42062745 -102219744 - MIR SINE MIR -5 257 62 21 0 0 0 chr12 42062915 42062936 -102219553 + AT_rich Low_complexity Low_complexity 1 21 0 199 323 52 21 chr12 42063818 42063914 -102218575 + MIR SINE MIR 53 151 -111 1143 163 5 37 chr12 42063990 42064205 -102218284 - AluJo SINE Alu -11 301 94 1438 175 0 25 chr12 42064695 42064975 -102217514 - AluJo SINE Alu -14 298 26 329 189 0 0 chr12 42067509 42067562 -102214927 + MER20 DNA MER1_type 93 145 -74 298 157 133 24 chr12 42067563 42067646 -102214843 - L1M4 LINE L1 -1313 5113 5022 271 167 46 0 chr12 42067653 42067714 -102214775 - FLAM_A SINE Alu -11 122 72 7867 226 87 37 chr12 42067732 42070589 -102211900 - L1MCa LINE L1 -2268 4158 1047 1630 207 0 3 chr12 42070589 42070889 -102211600 - AluJo SINE Alu -13 299 1 7867 226 87 37 chr12 42070889 42071955 -102210534 - L1MCa LINE L1 -5379 1047 35 782 248 105 66 chr12 42071966 42072591 -102209898 - L1MDb LINE L1 -4836 1704 1039 15280 220 34 15 chr12 42072612 42076290 -102206199 - L1PA15 LINE L1 -41 6775 3170 1993 123 14 10 chr12 42076290 42076582 -102205907 - AluSx SINE Alu -17 295 3 15280 220 34 15 chr12 42076582 42076816 -102205673 - L1PA15 LINE L1 -3646 3170 2942 2072 134 0 3 chr12 42076816 42077114 -102205375 - AluSx SINE Alu -15 297 1 15280 220 34 15 chr12 42077114 42078614 -102203875 - L1PA15 LINE L1 -3874 2942 1263 300 292 53 7 chr12 42078690 42078828 -102203661 - L1MDb LINE L1 -6236 307 70 2343 272 65 26 chr12 42078836 42079486 -102203003 - L1PA15 LINE L1 -6112 675 1 296 278 19 19 chr12 42079585 42079693 -102202796 - L1ME LINE L1 -5616 914 807 363 302 56 43 chr12 42080059 42080373 -102202116 - L1ME LINE L1 -5907 623 57 3115 178 77 90 chr12 42081171 42082042 -102200447 + MER21B LTR ERV1 1 860 -3 310 358 123 12 chr12 42082130 42082292 -102200197 - MIR3 SINE MIR -13 195 16 1729 108 139 0 chr12 42082301 42082559 -102199930 - AluSg SINE Alu -6 294 1 21 0 0 0 chr12 42082771 42082792 -102199697 + AT_rich Low_complexity Low_complexity 1 21 0 315 306 93 37 chr12 42083989 42084097 -102198392 - L2 LINE L2 0 3272 3159 261 216 20 0 chr12 42084435 42084486 -102198003 - MIR SINE MIR -10 252 201 277 341 52 7 chr12 42086186 42086321 -102196168 - L3 LINE CR1 -755 822 682 478 340 70 53 chr12 42086530 42086886 -102195603 - L3 LINE CR1 -1142 435 74 1895 137 81 0 chr12 42087351 42087673 -102194816 - MER7A DNA MER2_type 0 346 1 222 330 0 54 chr12 42088274 42088386 -102194103 - MIR SINE MIR 0 262 157 267 280 180 0 chr12 42089656 42089756 -102192733 - L3 LINE CR1 -5 1572 1455 2813 274 165 16 chr12 42089800 42091441 -102191048 - L2 LINE L2 -15 3298 1422 2177 70 50 33 chr12 42092349 42092651 -102189838 - AluY SINE Alu -4 307 1 2621 169 31 38 chr12 42093788 42094440 -102188049 + L1MB2 LINE L1 5133 5787 -384 186 133 0 0 chr12 42094440 42094470 -102188019 + (TATG)n Simple_repeat Simple_repeat 1 30 0 323 290 0 43 chr12 42094470 42094563 -102187926 - L1MC4 LINE L1 -1340 6702 6614 1732 160 75 8 chr12 42094571 42094933 -102187556 + L1MB2 LINE L1 5785 6170 -1 189 0 0 0 chr12 42095012 42095033 -102187456 + (TGAG)n Simple_repeat Simple_repeat 2 22 0 690 288 50 5 chr12 42095036 42095234 -102187255 + MIR SINE MIR 10 216 -46 2391 94 0 3 chr12 42097104 42097413 -102185076 + AluSq SINE Alu 1 308 -5 245 232 14 14 chr12 42098341 42098410 -102184079 + MIR SINE MIR 179 247 -15 249 316 115 14 chr12 42098586 42098725 -102183764 + L2 LINE L2 3159 3311 -2 266 191 319 21 chr12 42098880 42098974 -102183515 - L2 LINE L2 0 3313 3192 1307 109 16 0 chr12 42100023 42100207 -102182282 - AluJb SINE Alu -18 294 108 348 298 142 74 chr12 42102845 42103819 -102178670 + L1M2 LINE L1 468 1359 -5490 936 75 0 0 chr12 42104620 42104763 -102177726 - AluSg/x SINE Alu 0 306 164 2369 71 3 0 chr12 42105563 42105857 -102176632 + AluSg SINE Alu 1 295 -15 464 301 98 80 chr12 42106482 42106742 -102175747 - MLT1K LTR MaLR -11 577 323 1897 161 148 3 chr12 42106742 42107114 -102175375 + MSTB LTR MaLR 1 426 0 464 301 98 80 chr12 42107114 42107394 -102175095 - MLT1K LTR MaLR -265 323 27 190 336 55 31 chr12 42107443 42107571 -102174918 - L2 LINE L2 -1286 2028 1898 2219 130 7 0 chr12 42107576 42107883 -102174606 + AluSx SINE Alu 3 311 -1 361 234 83 2 chr12 42108882 42108993 -102173496 + MIR SINE MIR 38 154 -69 401 314 76 22 chr12 42109023 42109246 -102173243 - MLT1L LTR MaLR -31 584 350 731 186 5 108 chr12 42109700 42109894 -102172595 - AluJb SINE Alu -1 311 138 1666 140 63 71 chr12 42110463 42110841 -102171648 + THE1C LTR MaLR 1 375 0 298 228 54 43 chr12 42111094 42111186 -102171303 + L2 LINE L2 3168 3260 -12 22 0 0 0 chr12 42111645 42111667 -102170822 + AT_rich Low_complexity Low_complexity 1 22 0 911 322 53 42 chr12 42112844 42113300 -102169189 + LTR67 LTR ERVL 2 462 -95 23 68 0 0 chr12 42113313 42113357 -102169132 + AT_rich Low_complexity Low_complexity 1 44 0 483 226 10 106 chr12 42113357 42113856 -102168633 + L1ME1 LINE L1 1884 2391 -3824 1375 189 29 29 chr12 42113876 42114157 -102168332 + AluJo SINE Alu 3 283 -29 2306 153 44 0 chr12 42114176 42114542 -102167947 - MSTA LTR MaLR -46 382 1 395 208 111 14 chr12 42114581 42114725 -102167764 + L1ME1 LINE L1 2385 2542 -3673 1328 146 0 15 chr12 42114725 42114930 -102167559 + AluJb SINE Alu 86 287 -25 3112 255 81 25 chr12 42114996 42116208 -102166281 + L1ME1 LINE L1 2582 3861 -2354 944 231 0 5 chr12 42116276 42116492 -102165997 + L1ME1 LINE L1 4954 5168 -1047 1347 174 18 28 chr12 42116496 42116778 -102165711 + AluSx SINE Alu 6 284 -28 229 276 0 11 chr12 42116794 42116881 -102165608 + L1ME1 LINE L1 5163 5248 -967 4553 209 37 31 chr12 42116894 42118847 -102163642 - L1MD1 LINE L1 -28 6214 4252 1853 248 23 60 chr12 42118846 42119622 -102162867 + L1ME1 LINE L1 5242 5990 -245 * 1689 166 14 7 chr12 42119629 42119907 -102162582 - AluJb SINE Alu -26 286 7 646 171 0 0 chr12 42120072 42120189 -102162300 + L1MA10 LINE L1 6211 6327 -7 207 0 0 0 chr12 42120189 42120212 -102162277 + (TTG)n Simple_repeat Simple_repeat 1 23 0 2039 120 13 7 chr12 42120218 42120518 -102161971 - AluSx SINE Alu -10 302 1 290 304 38 33 chr12 42120662 42120846 -102161643 + MLT1J LTR MaLR 327 511 0 1723 163 3 7 chr12 42121746 42122028 -102160461 + AluJo SINE Alu 7 287 -25 2030 112 7 33 chr12 42122036 42122340 -102160149 + AluSx SINE Alu 1 296 -16 237 261 45 0 chr12 42123100 42123188 -102159301 + (TTTA)n Simple_repeat Simple_repeat 1 92 0 1609 173 0 24 chr12 42123192 42123481 -102159008 - AluJo SINE Alu -30 282 1 376 321 0 0 chr12 42123482 42123594 -102158895 - L2 LINE L2 -12 3301 3190 875 128 0 54 chr12 42123628 42123776 -102158713 + AluJo SINE Alu 1 140 -172 23 33 0 0 chr12 42124021 42124051 -102158438 + AT_rich Low_complexity Low_complexity 1 30 0 288 268 0 0 chr12 42126078 42126149 -102156340 + MER69A DNA AcHobo 2 72 -105 465 217 33 51 chr12 42126164 42126334 -102156155 - MER69A DNA AcHobo 0 177 14 4143 98 3 88 chr12 42126556 42127280 -102155209 + MER4A LTR ERV1 3 664 0 2550 56 0 0 chr12 42130002 42130304 -102152185 - AluY SINE Alu -9 302 1 318 315 25 53 chr12 42130373 42130732 -102151757 + MERVL LTR ERVL 5007 5308 -177 278 262 161 52 chr12 42131116 42131364 -102151125 + LTR16C LTR ERVL 174 448 -43 2093 124 0 0 chr12 42131433 42131723 -102150766 + AluSx SINE Alu 1 290 -22 628 180 110 40 chr12 42131837 42132137 -102150352 - L1MC5 LINE L1 -179 7782 7462 25 0 0 0 chr12 42132167 42132192 -102150297 + AT_rich Low_complexity Low_complexity 1 25 0 290 198 66 28 chr12 42132256 42132362 -102150127 - L1MC5 LINE L1 -469 7492 7383 32 43 0 0 chr12 42132363 42132409 -102150080 + AT_rich Low_complexity Low_complexity 1 46 0 204 290 29 0 chr12 42132867 42132936 -102149553 + L2 LINE L2 3233 3303 -10 22 0 0 0 chr12 42133222 42133244 -102149245 + AT_rich Low_complexity Low_complexity 1 22 0 1642 168 3 18 chr12 42133442 42133749 -102148740 + AluJb SINE Alu 1 303 0 273 127 0 109 chr12 42133827 42133882 -102148607 + FLAM SINE Alu 81 129 -4 4379 82 49 14 chr12 42133977 42134635 -102147854 - L1MA1 LINE L1 0 6302 5622 332 286 103 24 chr12 42135395 42135521 -102146968 - L2 LINE L2 0 3272 3137 233 312 144 8 chr12 42135887 42136012 -102146477 - L2 LINE L2 -566 2748 2607 21 57 0 0 chr12 42136715 42136750 -102145739 + AT_rich Low_complexity Low_complexity 1 35 0 494 160 28 0 chr12 42136926 42137032 -102145457 + L1MB3 LINE L1 6075 6183 0 260 162 0 118 chr12 42137537 42137605 -102144884 - L1MB8 LINE L1 -116 6062 6003 211 349 28 19 chr12 42137619 42137725 -102144764 + MER5A DNA MER1_type 38 144 -45 3790 202 42 10 chr12 42137884 42138811 -102143678 + Charlie1 DNA MER1_type 1564 2620 -141 318 257 62 0 chr12 42138861 42138974 -102143515 + MIR SINE MIR 86 205 -57 570 326 41 102 chr12 42139334 42139822 -102142667 - L2 LINE L2 0 3272 2815 204 158 0 0 chr12 42140820 42140858 -102141631 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 568 302 113 24 chr12 42140986 42141483 -102141006 + L1ME LINE L1 4404 4944 -1202 2020 229 23 32 chr12 42141538 42142063 -102140426 - MLT1F LTR MaLR -22 520 1 372 341 63 14 chr12 42142064 42142287 -102140202 + L1ME LINE L1 4994 5227 -919 660 259 141 73 chr12 42142303 42142515 -102139974 + L1ME LINE L1 5258 5454 -708 207 0 0 0 chr12 42142515 42142538 -102139951 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 660 259 141 73 chr12 42142538 42142843 -102139646 + L1ME LINE L1 5454 5810 -352 201 352 14 0 chr12 42143070 42143141 -102139348 - L2 LINE L2 0 3272 3201 2380 84 0 0 chr12 42143162 42143518 -102138971 + AluY SINE Alu 3 358 0 205 306 14 14 chr12 42143521 42143593 -102138896 - L2 LINE L2 -1863 1451 1380 571 122 304 0 chr12 42144475 42144590 -102137899 + FRAM SINE Alu 7 156 -20 431 319 150 9 chr12 42146620 42146833 -102135656 + MIR SINE MIR 20 262 0 485 284 94 69 chr12 42147370 42147818 -102134671 - MLT1J LTR MaLR -52 459 1 3003 189 127 108 chr12 42148124 42148682 -102133807 + L1MC3 LINE L1 6595 7141 -644 283 170 0 19 chr12 42148682 42148735 -102133754 + MLT1F1 LTR MaLR 67 118 -449 3003 189 127 108 chr12 42148735 42149294 -102133195 + L1MC3 LINE L1 7141 7785 0 1656 114 49 0 chr12 42150639 42150902 -102131587 - L1MB3 LINE L1 -2 6181 5906 909 186 0 19 chr12 42151257 42151418 -102131071 - AluJb SINE Alu -19 293 136 782 168 0 14 chr12 42151598 42151741 -102130748 - FLAM_C SINE Alu -2 141 1 207 0 0 0 chr12 42152844 42152867 -102129622 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 180 340 140 0 chr12 42153298 42153398 -102129091 - MIR SINE MIR -131 131 18 356 341 54 36 chr12 42154444 42154611 -102127878 - MIR SINE MIR -85 177 8 185 347 40 40 chr12 42155748 42155872 -102126617 - L2 LINE L2 -8 3264 3141 344 265 98 0 chr12 42156488 42156590 -102125899 - MLT1H LTR MaLR -227 322 211 180 179 0 0 chr12 42157027 42157066 -102125423 + T-rich Low_complexity Low_complexity 2 40 0 247 189 102 55 chr12 42157878 42157944 -102124545 - L1ME4a LINE L1 -30 6091 6030 631 174 0 30 chr12 42157944 42158076 -102124413 + FLAM_C SINE Alu 1 128 -5 247 189 102 55 chr12 42158076 42158136 -102124353 - L1ME4a LINE L1 -91 6030 5959 1614 148 8 77 chr12 42158137 42158508 -102123981 - MER4A LTR ERV1 0 664 261 596 124 21 10 chr12 42158508 42158605 -102123884 - MER4A LTR ERV1 -566 98 1 14822 103 57 22 chr12 42158613 42159648 -102122841 - MER4A-int LTR ERV1 -2 6596 5598 769 208 0 0 chr12 42159648 42159778 -102122711 - AluJ SINE Alu -172 130 1 14822 103 57 22 chr12 42159778 42161186 -102121303 - MER4A-int LTR ERV1 -1000 5598 4070 596 98 0 0 chr12 42161186 42161268 -102121221 + AluSg/x SINE Alu 218 299 -13 1120 121 12 6 chr12 42161363 42161529 -102120960 + AluSx SINE Alu 1 167 -145 723 119 7 53 chr12 42161529 42161680 -102120809 - MER4-int LTR ERV1 -2536 4062 3919 2684 118 68 32 chr12 42161686 42162243 -102120246 - MER4-int LTR ERV1 -3280 3318 2742 1025 196 147 0 chr12 42162247 42162471 -102120018 + LTR8 LTR ERV1 1 257 -434 761 150 0 0 chr12 42162472 42162605 -102119884 - MER4-int LTR ERV1 -4104 2494 2362 310 310 241 7 chr12 42162841 42162986 -102119503 + MER5A DNA MER1_type 11 189 0 376 21 0 0 chr12 42163311 42163358 -102119131 + MADE1 DNA Mariner 34 80 0 617 228 16 0 chr12 42163758 42163885 -102118604 - FLAM_C SINE Alu -14 129 1 25 51 0 0 chr12 42164678 42164717 -102117772 + AT_rich Low_complexity Low_complexity 1 39 0 24 67 0 0 chr12 42165530 42165575 -102116914 + AT_rich Low_complexity Low_complexity 1 45 0 1935 149 3 0 chr12 42165943 42166238 -102116251 + AluSx SINE Alu 1 296 -16 280 212 76 61 chr12 42166768 42166900 -102115589 - HAL1b LINE L1 -465 883 750 29 0 0 0 chr12 42167090 42167119 -102115370 + AT_rich Low_complexity Low_complexity 1 29 0 230 319 26 0 chr12 42167241 42167354 -102115135 - HAL1 LINE L1 -827 1680 1565 448 248 128 0 chr12 42167387 42167520 -102114969 + L2 LINE L2 720 869 -2445 237 346 13 0 chr12 42167689 42167767 -102114722 - L2 LINE L2 -1 3271 3193 2302 208 49 18 chr12 42168069 42168617 -102113872 + MLT1F1 LTR MaLR 3 567 0 2501 65 0 3 chr12 42169471 42169779 -102112710 + AluY SINE Alu 3 309 -2 2261 107 7 0 chr12 42169878 42170188 -102112301 + AluSx SINE Alu 1 312 0 649 286 121 0 chr12 42170584 42170790 -102111699 + MIR SINE MIR 2 232 -30 201 254 0 0 chr12 42170806 42170865 -102111624 + (TAA)n Simple_repeat Simple_repeat 2 60 0 1703 190 31 68 chr12 42171724 42172082 -102110407 - MLT1C LTR MaLR 0 467 129 2045 109 4 4 chr12 42172082 42172387 -102110102 - AluSc SINE Alu 0 311 7 1703 190 31 68 chr12 42172387 42172512 -102109977 - MLT1C LTR MaLR -338 129 1 606 327 54 21 chr12 42173005 42173427 -102109062 - L2 LINE L2 -261 3052 2623 954 218 24 14 chr12 42173567 42173778 -102108711 + MLT1C LTR MaLR 59 271 -196 1852 191 3 27 chr12 42173779 42174150 -102108339 - MER57A LTR ERV1 0 403 42 570 155 54 143 chr12 42174153 42174321 -102108168 - LTR8A LTR ERV1 -6 721 569 2379 72 7 0 chr12 42174330 42174636 -102107853 - AluY SINE Alu -3 308 1 332 104 0 0 chr12 42174681 42174729 -102107760 - MER57A LTR ERV1 -353 50 3 259 301 53 26 chr12 42174729 42174837 -102107652 + MLT1C LTR MaLR 273 382 -85 1462 132 0 0 chr12 42174837 42175042 -102107447 + AluSg/x SINE Alu 83 287 -23 263 258 0 0 chr12 42176056 42176122 -102106367 + LTR37B LTR ERV1 7 72 -396 1748 148 3 35 chr12 42176172 42176482 -102106007 - AluSx SINE Alu -12 300 1 948 177 41 34 chr12 42176591 42176857 -102105632 + LTR37B LTR ERV1 201 468 0 22 56 0 0 chr12 42176990 42177026 -102105463 + AT_rich Low_complexity Low_complexity 1 36 0 1555 144 45 27 chr12 42177029 42177321 -102105168 - AluJo SINE Alu -6 306 10 4605 100 33 5 chr12 42177321 42177991 -102104498 + LTR8 LTR ERV1 3 691 0 3431 175 26 53 chr12 42178055 42178573 -102103916 - MER72 LTR ERV1 0 722 228 2409 72 0 3 chr12 42178573 42178880 -102103609 + AluY SINE Alu 4 309 -2 3431 175 26 53 chr12 42178880 42179103 -102103386 - MER72 LTR ERV1 -494 228 1 463 314 39 19 chr12 42179318 42179474 -102103015 - MIR SINE MIR -88 174 16 242 282 37 25 chr12 42179523 42179617 -102102872 - MIR SINE MIR -72 136 57 1691 168 7 7 chr12 42179827 42180140 -102102349 + AluJb SINE Alu 9 321 0 376 205 31 177 chr12 42180678 42180932 -102101557 + L1MC4 LINE L1 7808 8024 -18 4778 125 88 26 chr12 42180966 42181816 -102100673 + MER4D LTR ERV1 1 903 0 26 0 0 0 chr12 42181944 42181970 -102100519 + AT_rich Low_complexity Low_complexity 1 26 0 371 280 188 19 chr12 42181971 42182178 -102100311 - MIR SINE MIR -1 261 20 253 146 0 0 chr12 42182582 42182623 -102099866 - L2 LINE L2 -2 3311 3271 1629 164 33 4 chr12 42182893 42183167 -102099322 + AluJb SINE Alu 22 303 -9 396 284 37 9 chr12 42184554 42184663 -102097826 + MIR3 SINE MIR 56 167 -41 1661 128 151 120 chr12 42184680 42185072 -102097417 - MER4A LTR ERV1 0 664 261 565 134 21 10 chr12 42185072 42185169 -102097320 - MER4A LTR ERV1 -566 98 1 15435 124 48 37 chr12 42185170 42185866 -102096623 - MER4A-int LTR ERV1 0 6598 5911 1892 179 0 0 chr12 42185866 42186173 -102096316 - AluSx SINE Alu -5 307 1 15435 124 48 37 chr12 42186173 42188403 -102094086 - MER4A-int LTR ERV1 -687 5911 2152 2405 56 0 7 chr12 42188403 42188691 -102093798 - AluY SINE Alu -25 286 1 15435 124 48 37 chr12 42188691 42188986 -102093503 - MER4A-int LTR ERV1 -4446 2152 1862 1031 174 179 0 chr12 42188986 42189204 -102093285 + LTR8 LTR ERV1 1 257 -434 3730 97 103 13 chr12 42189204 42189883 -102092606 - MER4A-int LTR ERV1 -4103 2495 1756 4160 117 32 45 chr12 42189894 42190855 -102091634 - MER4A-int LTR ERV1 -5566 1192 189 1058 252 33 33 chr12 42190897 42191171 -102091318 - MER4A-int LTR ERV1 -4164 2167 1894 302 0 0 26 chr12 42191347 42191386 -102091103 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2182 92 74 34 chr12 42191396 42191835 -102090654 - MER4A-int LTR ERV1 -6035 563 43 1580 159 161 75 chr12 42191835 42192207 -102090282 - MER4A LTR ERV1 0 664 261 615 113 21 10 chr12 42192207 42192304 -102090185 - MER4A LTR ERV1 -566 98 1 228 306 122 20 chr12 42193548 42193695 -102088794 - L2 LINE L2 -1 3312 3151 220 186 47 0 chr12 42193777 42193820 -102088669 - MIR SINE MIR -48 214 170 1091 173 35 5 chr12 42193821 42194018 -102088471 - MLT1B LTR MaLR 0 390 188 315 0 0 0 chr12 42194021 42194056 -102088433 + (CA)n Simple_repeat Simple_repeat 2 36 0 219 167 0 0 chr12 42194056 42194098 -102088391 + GA-rich Low_complexity Low_complexity 1 42 0 328 364 48 15 chr12 42194707 42194913 -102087576 - L2 LINE L2 -1154 2160 1948 204 244 378 0 chr12 42194944 42195034 -102087455 - MIR SINE MIR -44 218 95 201 288 17 0 chr12 42195094 42195153 -102087336 - L2 LINE L2 -1407 1907 1848 192 341 49 0 chr12 42195363 42195445 -102087044 + MIR SINE MIR 2 87 -175 433 191 0 0 chr12 42195514 42195598 -102086891 - AluJ/FRAM SINE Alu -4 308 225 2013 161 9 75 chr12 42195742 42196040 -102086449 + Tigger2a DNA MER2_type 12 275 -2433 1816 157 3 24 chr12 42196040 42196334 -102086155 - AluJo SINE Alu -22 290 3 2013 161 9 75 chr12 42196334 42196464 -102086025 + Tigger2a DNA MER2_type 275 412 -22 230 215 0 31 chr12 42196450 42196515 -102085974 + AluJ/monomer SINE Alu 238 300 -2 * 1682 189 23 13 chr12 42197328 42197635 -102084854 + AluJo SINE Alu 1 310 -2 430 213 27 0 chr12 42197896 42197971 -102084518 + AluJ/FLAM SINE Alu 1 77 -225 4237 176 28 47 chr12 42197987 42199006 -102083483 + L1 LINE L1 3091 4089 -2057 30 69 0 0 chr12 42199171 42199229 -102083260 + AT_rich Low_complexity Low_complexity 1 58 0 1062 185 173 26 chr12 42200325 42200638 -102081851 - L1MB8 LINE L1 -1 6177 5819 284 224 0 15 chr12 42200638 42200689 -102081800 - AluS SINE Alu -14 287 238 970 141 13 56 chr12 42200689 42200897 -102081592 + THE1C LTR MaLR 1 209 -146 1991 108 3 46 chr12 42200897 42201258 -102081231 - AluSg SINE Alu 0 347 1 1248 132 14 18 chr12 42201260 42201479 -102081010 + THE1C LTR MaLR 155 372 -3 477 209 0 52 chr12 42201479 42201594 -102080895 - FAM SINE Alu -76 109 1 436 209 126 9 chr12 42201595 42201809 -102080680 - L1MB8 LINE L1 -298 5823 5575 203 318 141 0 chr12 42202364 42202449 -102080040 + L2 LINE L2 3175 3271 -1 26 74 0 0 chr12 42202528 42202582 -102079907 + AT_rich Low_complexity Low_complexity 1 54 0 242 235 39 0 chr12 42202584 42202635 -102079854 - MER57A LTR ERV1 -60 343 291 2166 116 7 0 chr12 42203332 42203624 -102078865 - AluJb SINE Alu -17 295 2 289 349 46 9 chr12 42203962 42204071 -102078418 + L2 LINE L2 3158 3270 -2 584 188 60 8 chr12 42204650 42204767 -102077722 + FLAM_C SINE Alu 1 123 -20 413 277 88 127 chr12 42206813 42207120 -102075369 + L2 LINE L2 2971 3265 -7 185 94 31 0 chr12 42208175 42208207 -102074282 + (CATA)n Simple_repeat Simple_repeat 3 35 0 278 179 34 51 chr12 42208221 42208338 -102074151 + (TTATA)n Simple_repeat Simple_repeat 5 119 0 561 134 21 10 chr12 42208347 42208444 -102074045 + MER4A LTR ERV1 1 98 -566 482 129 421 50 chr12 42208444 42208584 -102073905 + MER4A LTR ERV1 261 452 -212 13720 107 62 15 chr12 42208601 42209430 -102073059 + MER4-int LTR ERV1 3948 4737 -1861 2108 110 7 0 chr12 42209430 42209729 -102072760 - AluSg SINE Alu -9 301 1 13720 107 62 15 chr12 42209729 42211182 -102071307 + MER4-int LTR ERV1 4737 6337 -261 874 149 6 54 chr12 42211182 42211400 -102071089 + MER4B LTR ERV1 386 574 -90 1052 227 115 38 chr12 42211403 42211742 -102070747 - MLT1A1 LTR MaLR 0 365 1 1180 173 36 161 chr12 42211941 42212358 -102070131 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr12 42212435 42212457 -102070032 + AT_rich Low_complexity Low_complexity 1 22 0 455 330 80 70 chr12 42212487 42213103 -102069386 + L2 LINE L2 2260 2881 -433 1111 235 41 26 chr12 42213103 42213469 -102069020 + LTR16A LTR ERVL 26 450 0 244 282 233 0 chr12 42213684 42213787 -102068702 + L2 LINE L2 3138 3264 -8 267 296 232 0 chr12 42214904 42215029 -102067460 + L2 LINE L2 3119 3272 0 220 248 143 57 chr12 42215993 42216098 -102066391 + MIR SINE MIR 20 133 -75 244 289 135 10 chr12 42216104 42216208 -102066281 - L2 LINE L2 0 3313 3197 299 184 0 0 chr12 42216223 42216272 -102066217 - MER8 DNA MER2_type 0 239 191 1514 139 49 21 chr12 42216281 42216569 -102065920 + Tigger2 DNA MER2_type 2296 2591 -127 851 291 56 39 chr12 42217190 42217654 -102064835 - L1ME3A LINE L1 -329 5841 5370 416 128 43 0 chr12 42217675 42217764 -102064725 + (TA)n Simple_repeat Simple_repeat 2 95 0 1978 134 7 0 chr12 42217764 42218048 -102064441 - AluSx SINE Alu -26 286 1 289 275 125 45 chr12 42218074 42218272 -102064217 - L1ME3A LINE L1 -830 5316 5135 1651 199 3 3 chr12 42218272 42218579 -102063910 - AluJo SINE Alu -5 307 1 289 275 125 45 chr12 42218579 42218635 -102063854 - L1ME3A LINE L1 -1011 5135 5085 2119 114 7 13 chr12 42218635 42218941 -102063548 - AluSx SINE Alu -8 304 1 289 275 125 45 chr12 42218941 42219212 -102063277 - L1ME3A LINE L1 -1061 5085 4748 369 329 203 7 chr12 42219237 42219380 -102063109 + MER91A DNA MER1_type 20 190 -6 368 295 162 15 chr12 42219496 42219767 -102062722 - L1ME3A LINE L1 -1423 4723 4413 337 309 140 57 chr12 42219876 42220313 -102062176 - L1M4 LINE L1 -765 5381 4909 457 167 122 86 chr12 42220834 42221055 -102061434 - L1MC5 LINE L1 -32 7929 7701 434 245 39 106 chr12 42221152 42221360 -102061129 + MIR SINE MIR 13 206 -56 5427 174 15 32 chr12 42224700 42225230 -102057259 - L1MA4 LINE L1 -7 6293 5756 1506 165 0 39 chr12 42225230 42225485 -102057004 - AluJo SINE Alu -26 286 42 5427 174 15 32 chr12 42225485 42226289 -102056200 - L1MA4 LINE L1 -544 5756 4983 1862 221 13 33 chr12 42226473 42227279 -102055210 - L1M1 LINE L1 -565 5735 4939 261 0 0 0 chr12 42228421 42228450 -102054039 + (T)n Simple_repeat Simple_repeat 1 29 0 1975 133 0 37 chr12 42229738 42230062 -102052427 + AluJo SINE Alu 1 312 0 298 98 61 0 chr12 42230210 42230292 -102052197 + (TA)n Simple_repeat Simple_repeat 2 88 0 4076 154 7 45 chr12 42230412 42230679 -102051810 - L1MA4 LINE L1 -280 6020 5745 1506 165 0 39 chr12 42230679 42230934 -102051555 - AluJo SINE Alu -26 286 42 4076 154 7 45 chr12 42230934 42231783 -102050706 - L1MA4 LINE L1 -555 5745 4939 252 0 0 0 chr12 42232925 42232953 -102049536 + (T)n Simple_repeat Simple_repeat 1 28 0 2174 114 0 0 chr12 42233893 42234200 -102048289 - AluSc SINE Alu -2 307 1 610 142 25 0 chr12 42234537 42234657 -102047832 - L1MA9 LINE L1 0 6312 6190 1816 138 10 24 chr12 42234713 42235004 -102047485 + AluJo SINE Alu 1 287 -25 190 378 52 15 chr12 42235468 42235603 -102046886 + L2 LINE L2 2148 2287 -1027 325 317 42 28 chr12 42235738 42235880 -102046609 - MIR SINE MIR -13 249 106 225 0 0 0 chr12 42237347 42237372 -102045117 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 21 36 0 0 chr12 42240206 42240234 -102042255 + AT_rich Low_complexity Low_complexity 1 28 0 415 348 68 49 chr12 42240264 42240649 -102041840 - L2 LINE L2 0 3272 2881 217 231 48 77 chr12 42240747 42240851 -102041638 - L2 LINE L2 -450 2864 2764 204 40 0 0 chr12 42241513 42241538 -102040951 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 589 73 20 3 chr12 42242243 42242335 -102040154 - L1MC/D LINE L1 -580 5574 5507 201 178 0 0 chr12 42242413 42242458 -102040031 + (ATG)n Simple_repeat Simple_repeat 2 46 0 421 307 49 6 chr12 42242461 42242624 -102039865 - MIR SINE MIR -30 232 63 452 266 140 14 chr12 42243776 42243990 -102038499 - L1ME3A LINE L1 -224 5929 5689 25 0 0 0 chr12 42244065 42244090 -102038399 + AT_rich Low_complexity Low_complexity 1 25 0 1606 16 0 16 chr12 42244238 42244430 -102038059 + L1PA3 LINE L1 5967 6155 0 322 286 135 51 chr12 42244549 42244727 -102037762 - L1ME3A LINE L1 -917 5212 5020 774 286 159 45 chr12 42244905 42245610 -102036879 - L1ME3A LINE L1 -1333 4796 4012 24 53 0 0 chr12 42245630 42245668 -102036821 + AT_rich Low_complexity Low_complexity 1 38 0 30 45 0 0 chr12 42245733 42245777 -102036712 + AT_rich Low_complexity Low_complexity 1 44 0 264 268 63 28 chr12 42246003 42246145 -102036344 - L1ME3A LINE L1 -5264 855 709 225 260 0 0 chr12 42246427 42246477 -102036012 - L1ME3A LINE L1 -5973 146 97 303 247 0 41 chr12 42246944 42247041 -102035448 + L1MC4 LINE L1 6611 6703 -1339 690 192 0 0 chr12 42247041 42247299 -102035190 + (TA)n Simple_repeat Simple_repeat 1 258 0 277 371 14 14 chr12 42247301 42247441 -102035048 - MIR SINE MIR -74 188 49 2106 115 7 0 chr12 42249680 42249967 -102032522 + AluSq SINE Alu 3 291 -22 3388 89 2 0 chr12 42249973 42250435 -102032054 - L1PA10 LINE L1 -9 6159 5697 23 33 0 0 chr12 42250542 42250572 -102031917 + AT_rich Low_complexity Low_complexity 1 30 0 26 50 0 0 chr12 42250656 42250696 -102031793 + AT_rich Low_complexity Low_complexity 1 40 0 27 49 0 0 chr12 42251978 42252019 -102030470 + AT_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr12 42252836 42252862 -102029627 + AT_rich Low_complexity Low_complexity 1 26 0 1686 180 32 0 chr12 42252862 42253145 -102029344 - AluJo SINE Alu -20 292 1 350 289 47 82 chr12 42253155 42253411 -102029078 - L1MC/D LINE L1 -1991 5817 5571 402 303 157 18 chr12 42254538 42254812 -102027677 - L2 LINE L2 0 3313 3002 1002 175 27 6 chr12 42255015 42255198 -102027291 + MER5A DNA MER1_type 2 188 -1 1888 141 10 13 chr12 42255633 42255945 -102026544 + AluJo SINE Alu 1 311 -1 213 164 0 55 chr12 42257376 42257431 -102025058 + (GGGTG)n Simple_repeat Simple_repeat 4 55 0 445 323 77 31 chr12 42257492 42257687 -102024802 + MIR SINE MIR 59 262 0 22 0 0 0 chr12 42258459 42258481 -102024008 + AT_rich Low_complexity Low_complexity 1 22 0 462 268 73 7 chr12 42258532 42258685 -102023804 + MIR SINE MIR 17 178 -62 207 324 156 69 chr12 42259613 42260018 -102022471 - L2 LINE L2 -4 3268 2829 233 318 34 0 chr12 42261019 42261107 -102021382 + (CCGTA)n Simple_repeat Simple_repeat 4 94 0 234 244 64 0 chr12 42261144 42261222 -102021267 - L2 LINE L2 -930 2384 2302 257 261 29 0 chr12 42261296 42261365 -102021124 - L1MD3 LINE L1 -233 7762 7692 363 299 95 7 chr12 42261518 42261665 -102020824 + L3 LINE CR1 1098 1257 -320 599 307 43 35 chr12 42261690 42261921 -102020568 - MIR SINE MIR 0 262 30 260 358 8 33 chr12 42262065 42262185 -102020304 + L3 LINE CR1 1261 1377 -200 219 221 15 44 chr12 42262303 42262371 -102020118 - MIR SINE MIR -134 128 63 222 404 11 0 chr12 42262394 42262488 -102020001 + L2 LINE L2 3152 3246 -26 415 265 12 6 chr12 42262591 42262761 -102019728 + AluJo SINE Alu 127 297 -15 294 128 51 0 chr12 42262926 42263004 -102019485 + (TA)n Simple_repeat Simple_repeat 1 82 0 1520 128 0 0 chr12 42263004 42263215 -102019274 - AluSg/x SINE Alu -26 284 74 29 28 0 0 chr12 42263787 42263823 -102018666 + AT_rich Low_complexity Low_complexity 1 36 0 745 75 0 120 chr12 42264272 42264425 -102018064 + AluSg/x SINE Alu 168 304 0 234 91 0 0 chr12 42265001 42265034 -102017455 + (CTCA)n Simple_repeat Simple_repeat 3 35 0 418 222 0 12 chr12 42315950 42316031 -101966458 - MER94 DNA DNA -53 81 2 375 344 96 23 chr12 42316282 42316710 -101965779 - MARNA DNA Mariner -13 573 115 24 0 0 0 chr12 42317628 42317652 -101964837 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr12 42317955 42317977 -101964512 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 42318225 42318256 -101964233 + AT_rich Low_complexity Low_complexity 1 31 0 225 337 11 22 chr12 42318796 42318885 -101963604 + MIR SINE MIR 16 103 -105 361 206 325 0 chr12 42319461 42319587 -101962902 + MIR3 SINE MIR 42 208 0 800 207 121 20 chr12 42320312 42320510 -101961979 - MER20 DNA MER1_type 0 219 2 22 0 0 0 chr12 42320569 42320591 -101961898 + AT_rich Low_complexity Low_complexity 1 22 0 222 371 91 8 chr12 42320898 42321030 -101961459 + MIR SINE MIR 14 156 -106 651 339 134 13 chr12 42322201 42322649 -101959840 - MLT1H1 LTR MaLR 0 555 54 739 282 11 5 chr12 42322835 42323023 -101959466 - MIR SINE MIR -49 213 25 254 299 94 17 chr12 42323023 42323140 -101959349 - L2 LINE L2 -92 3221 3096 579 270 94 0 chr12 42323601 42323760 -101958729 - MIR SINE MIR -52 210 37 376 288 90 0 chr12 42323790 42323901 -101958588 + MER5A DNA MER1_type 9 129 -60 21 36 0 0 chr12 42324175 42324203 -101958286 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 42324665 42324688 -101957801 + AT_rich Low_complexity Low_complexity 1 23 0 228 86 0 0 chr12 42324850 42324885 -101957604 + (TG)n Simple_repeat Simple_repeat 2 36 0 323 267 15 61 chr12 42327143 42327274 -101955215 + MIR SINE MIR 127 251 -11 293 241 24 24 chr12 42328522 42328605 -101953884 + L2 LINE L2 2747 2829 -485 1114 123 46 0 chr12 42328635 42328830 -101953659 - L1MA8 LINE L1 -3 6288 6085 1981 108 0 7 chr12 42329406 42329675 -101952814 + AluSg1 SINE Alu 1 267 -42 186 118 0 0 chr12 42329678 42329712 -101952777 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 873 197 17 34 chr12 42329824 42330002 -101952487 - MER20 DNA MER1_type -2 217 43 21 0 0 0 chr12 42330267 42330288 -101952201 + AT_rich Low_complexity Low_complexity 1 21 0 2534 61 0 6 chr12 42330584 42330896 -101951593 + AluY SINE Alu 2 311 0 339 288 71 71 chr12 42331714 42331884 -101950605 + MER5B DNA MER1_type 1 170 -8 22 0 0 0 chr12 42332872 42332894 -101949595 + AT_rich Low_complexity Low_complexity 1 22 0 324 188 29 14 chr12 42333151 42333220 -101949269 + MER5A DNA MER1_type 10 79 -110 580 228 43 25 chr12 42333716 42333878 -101948611 - HAL1b LINE L1 -438 910 746 552 176 0 0 chr12 42334148 42334239 -101948250 - FLAM_A SINE Alu -17 125 35 783 295 75 45 chr12 42334393 42334929 -101947560 - HAL1 LINE L1 -590 1917 1366 272 211 98 114 chr12 42335001 42335124 -101947365 - L2 LINE L2 -3 3310 3190 1572 96 36 0 chr12 42335889 42336108 -101946381 + MER30 DNA MER1_type 4 230 0 204 163 0 0 chr12 42337361 42337404 -101945085 + A-rich Low_complexity Low_complexity 1 43 0 331 306 52 20 chr12 42337937 42338189 -101944300 - L2 LINE L2 -337 2977 2718 333 343 9 0 chr12 42338241 42338349 -101944140 + MER117 DNA MER1_type 1 109 -88 2528 151 5 29 chr12 42338467 42338912 -101943577 - Tigger2a DNA MER2_type 0 434 1 184 328 75 0 chr12 42339485 42339552 -101942937 - MIR SINE MIR -183 79 8 579 312 104 11 chr12 42339991 42340270 -101942219 + L2 LINE L2 2449 2753 -561 373 247 27 67 chr12 42340484 42340634 -101941855 + L2 LINE L2 3126 3269 -44 209 366 59 10 chr12 42342166 42342267 -101940222 - L2 LINE L2 -35 3237 3132 185 300 20 0 chr12 42342432 42342482 -101940007 + L2 LINE L2 3263 3313 0 866 250 36 0 chr12 42344943 42345163 -101937326 + MER46C DNA MER2_type 1 228 -110 478 297 79 15 chr12 42345685 42345887 -101936602 - MIR SINE MIR 0 262 48 202 233 0 0 chr12 42346732 42346775 -101935714 + (CTA)n Simple_repeat Simple_repeat 1 43 0 443 356 58 4 chr12 42347035 42347260 -101935229 - MIR SINE MIR -19 243 7 327 250 11 65 chr12 42348295 42348387 -101934102 + L3 LINE CR1 1489 1575 -2 232 333 62 31 chr12 42348610 42348739 -101933750 + MIR SINE MIR 59 191 -71 23 33 0 0 chr12 42348995 42349025 -101933464 + AT_rich Low_complexity Low_complexity 1 30 0 616 244 65 72 chr12 42349423 42349474 -101933015 - L1MC4 LINE L1 0 8042 7992 2363 106 0 0 chr12 42349474 42349786 -101932703 + AluSx SINE Alu 1 312 0 616 244 65 72 chr12 42349786 42350013 -101932476 - L1MC4 LINE L1 -50 7992 7766 219 125 0 0 chr12 42350321 42350361 -101932128 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 192 227 23 0 chr12 42351629 42351673 -101930816 - L2 LINE L2 -5 3308 3264 2047 122 21 0 chr12 42351815 42352101 -101930388 + AluSx SINE Alu 2 293 -19 217 242 16 0 chr12 42352688 42352750 -101929739 + (CATATA)n Simple_repeat Simple_repeat 6 68 0 657 291 90 57 chr12 42352858 42353649 -101928840 - L1M4 LINE L1 -786 5360 4534 1302 148 79 55 chr12 42353649 42353940 -101928549 - AluJo SINE Alu -4 298 1 657 291 90 57 chr12 42353940 42354057 -101928432 - L1M4 LINE L1 -1612 4534 4422 312 275 69 94 chr12 42354255 42354659 -101927830 - L1MEd LINE L1 -5723 396 3 1308 254 50 41 chr12 42356039 42356476 -101926013 - LTR16A1 LTR ERVL 0 457 17 10212 39 7 124 chr12 42356606 42358166 -101924323 - SVA Other Other -9 1377 1 180 0 0 0 chr12 42358980 42359000 -101923489 + (TA)n Simple_repeat Simple_repeat 2 21 0 24 53 0 0 chr12 42359047 42359085 -101923404 + AT_rich Low_complexity Low_complexity 1 38 0 1145 172 58 108 chr12 42359360 42359678 -101922811 - MER67D LTR ERV1 -1 513 237 2121 133 7 3 chr12 42359678 42359980 -101922509 - AluSq SINE Alu -10 303 1 1145 172 58 108 chr12 42359980 42360206 -101922283 - MER67D LTR ERV1 -277 237 1 205 417 92 0 chr12 42360390 42360510 -101921979 + L2 LINE L2 3142 3272 0 5949 140 35 27 chr12 42360949 42361912 -101920577 - L1MA4A LINE L1 -4 6299 5345 1694 195 17 0 chr12 42361912 42362204 -101920285 - AluJo SINE Alu -15 297 1 5949 140 35 27 chr12 42362204 42363269 -101919220 - L1MA4A LINE L1 -958 5345 4235 24 0 0 0 chr12 42364084 42364108 -101918381 + AT_rich Low_complexity Low_complexity 1 24 0 430 253 143 42 chr12 42364193 42364430 -101918059 + MIR SINE MIR 2 262 0 677 325 100 25 chr12 42364488 42364919 -101917570 + L2 LINE L2 2424 2886 -428 539 291 29 29 chr12 42365151 42365326 -101917163 + MER5B DNA MER1_type 4 178 0 864 193 6 0 chr12 42365480 42365641 -101916848 - L1PA16 LINE L1 -1 6165 6004 336 369 28 75 chr12 42366641 42366855 -101915634 - L2 LINE L2 -88 3184 2981 21 36 0 0 chr12 42369680 42369708 -101912781 + AT_rich Low_complexity Low_complexity 1 28 0 550 341 74 39 chr12 42370201 42370690 -101911799 + L2 LINE L2 2764 3268 -4 21 0 0 0 chr12 42371626 42371647 -101910842 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr12 42372028 42372061 -101910428 + AT_rich Low_complexity Low_complexity 1 33 0 216 67 0 0 chr12 42375913 42375943 -101906546 + (A)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr12 42376070 42376091 -101906398 + AT_rich Low_complexity Low_complexity 1 21 0 281 289 225 0 chr12 42377924 42378066 -101904423 + MIR SINE MIR 10 183 -79 21 0 0 0 chr12 42378826 42378847 -101903642 + AT_rich Low_complexity Low_complexity 1 21 0 390 283 83 7 chr12 42378942 42379087 -101903402 - LTR16A LTR ERVL -239 211 56 4849 156 47 77 chr12 42379320 42379613 -101902876 + Tigger3b DNA MER2_type 1 301 -2727 2065 138 3 16 chr12 42379613 42379918 -101902571 - AluSx SINE Alu -11 301 1 4849 156 47 77 chr12 42379918 42380433 -101902056 + Tigger3b DNA MER2_type 301 758 -2270 1451 193 26 35 chr12 42380433 42380744 -101901745 + AluJb SINE Alu 5 312 0 4849 156 47 77 chr12 42380744 42381204 -101901285 + Tigger3b DNA MER2_type 758 1231 0 465 303 81 31 chr12 42381725 42382144 -101900345 + L1MEc LINE L1 895 1209 -4910 313 235 69 0 chr12 42382146 42382248 -101900241 + L1ME3 LINE L1 5846 5954 -216 266 245 32 32 chr12 42382348 42382442 -101900047 + L1ME3 LINE L1 5988 6081 -81 21 57 0 0 chr12 42382460 42382495 -101899994 + AT_rich Low_complexity Low_complexity 1 35 0 290 328 115 44 chr12 42382816 42383003 -101899486 - L2 LINE L2 -904 2410 2238 1844 139 61 76 chr12 42383003 42383399 -101899090 - MLT1B LTR MaLR 0 390 1 290 328 115 44 chr12 42383399 42383549 -101898940 - L2 LINE L2 -1076 2238 2049 39 80 0 0 chr12 42384175 42384263 -101898226 + AT_rich Low_complexity Low_complexity 1 88 0 1178 77 137 0 chr12 42384461 42384644 -101897845 + L1PA10 LINE L1 5957 6164 -4 2093 102 0 14 chr12 42385613 42385906 -101896583 - AluSg SINE Alu -21 289 1 757 287 82 40 chr12 42385949 42386277 -101896212 - L2 LINE L2 -2 3311 2970 4429 93 19 34 chr12 42386539 42386962 -101895527 + PABL_A LTR ERV1 1 412 -248 2253 106 0 3 chr12 42386962 42387263 -101895226 + AluY SINE Alu 1 300 -11 4429 93 19 34 chr12 42387263 42387508 -101894981 + PABL_A LTR ERV1 412 659 -1 218 300 43 0 chr12 42387561 42387631 -101894858 - L2 LINE L2 -307 3006 2934 993 98 0 0 chr12 42387639 42387772 -101894717 - THE1C LTR MaLR 0 375 243 5219 127 10 8 chr12 42387772 42388550 -101893939 + LTR17 LTR ERV1 1 780 0 4903 76 36 22 chr12 42388562 42389249 -101893240 + HERV17 LTR ERV1 11 707 -7919 5785 98 13 6 chr12 42389439 42390267 -101892222 + HERV17 LTR ERV1 703 1536 -7090 3779 71 2 0 chr12 42390447 42390924 -101891565 + HERV17 LTR ERV1 1537 2014 -6612 * 14150 60 4 1 chr12 42390909 42392656 -101889833 + HERV17 LTR ERV1 2430 4182 -4444 2369 68 0 0 chr12 42392649 42392941 -101889548 + HERV17 LTR ERV1 8335 8626 0 * 4586 121 71 8 chr12 42392941 42393675 -101888814 + LTR17 LTR ERV1 1 780 0 1685 115 4 0 chr12 42393676 42393920 -101888569 - THE1C LTR MaLR -130 245 1 4051 271 95 52 chr12 42393932 42395706 -101886783 - L2 LINE L2 -378 2936 1087 13720 145 36 5 chr12 42397842 42400187 -101882302 - Tigger1 DNA MER2_type 0 2418 2 23 68 0 0 chr12 42400966 42401010 -101881479 + AT_rich Low_complexity Low_complexity 1 44 0 379 321 15 15 chr12 42402178 42402309 -101880180 + L2 LINE L2 3141 3271 -1 2085 99 0 3 chr12 42405334 42405644 -101876845 + AluSc SINE Alu 1 309 0 359 281 59 37 chr12 42406158 42406293 -101876196 + MIR SINE MIR 74 211 -51 220 311 0 0 chr12 42406787 42406848 -101875641 - MIR SINE MIR -116 146 86 538 259 79 5 chr12 42406868 42407057 -101875432 - MER115 DNA AcHobo -25 668 466 631 306 99 45 chr12 42407114 42407467 -101875022 - MER115 DNA AcHobo -321 372 1 2148 178 106 52 chr12 42407827 42408301 -101874188 - MER67C LTR ERV1 -81 629 115 2320 104 3 0 chr12 42408301 42408608 -101873881 - AluSg SINE Alu 0 310 3 2148 178 106 52 chr12 42408608 42408729 -101873760 - MER67C LTR ERV1 -595 115 2 564 308 34 68 chr12 42408956 42409278 -101873211 - L2 LINE L2 0 3313 3003 1569 202 68 15 chr12 42409426 42409836 -101872653 - MSTB1 LTR MaLR 0 432 1 26 50 0 0 chr12 42410552 42410592 -101871897 + AT_rich Low_complexity Low_complexity 1 40 0 2299 134 11 26 chr12 42410853 42411234 -101871255 - THE1C LTR MaLR 0 375 1 751 342 125 10 chr12 42411603 42412018 -101870471 - MER115 DNA AcHobo -20 673 211 516 292 102 26 chr12 42413374 42413638 -101868851 - MER115 DNA AcHobo -23 670 387 1768 212 87 18 chr12 42414528 42415128 -101867361 - MER67C LTR ERV1 0 710 1 243 285 40 139 chr12 42415366 42415689 -101866800 - L2 LINE L2 -3 3310 3020 238 238 178 30 chr12 42417827 42417928 -101864561 + MIR SINE MIR 24 139 -69 222 37 0 0 chr12 42418568 42418595 -101863894 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 180 0 0 0 chr12 42423470 42423490 -101858999 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1275 228 26 4 chr12 42423490 42423762 -101858727 - AluJo SINE Alu -34 278 1 233 172 35 0 chr12 42423855 42423913 -101858576 + (CATA)n Simple_repeat Simple_repeat 4 63 0 291 269 157 22 chr12 42425544 42425678 -101856811 - MIR SINE MIR 0 262 111 504 105 0 13 chr12 42425689 42425765 -101856724 + MADE1 DNA Mariner 1 75 -5 183 338 149 0 chr12 42425766 42425840 -101856649 - MIR SINE MIR -160 102 18 4020 173 53 57 chr12 42426416 42427090 -101855399 - L1MA9 LINE L1 -38 6274 5599 2181 118 0 0 chr12 42427090 42427394 -101855095 - AluSx SINE Alu -7 305 2 4020 173 53 57 chr12 42427394 42428257 -101854232 - L1MA9 LINE L1 -713 5599 4743 1939 104 0 14 chr12 42429458 42429747 -101852742 + AluSg SINE Alu 1 285 -25 497 65 0 39 chr12 42430817 42430894 -101851595 - L1PA6 LINE L1 0 6154 6081 199 323 31 21 chr12 42430945 42431041 -101851448 - MIR3 SINE MIR -27 181 85 41 66 0 0 chr12 42432941 42433017 -101849472 + AT_rich Low_complexity Low_complexity 1 76 0 988 204 7 58 chr12 42433046 42433340 -101849149 - MER33 DNA MER1_type -1 323 45 2313 72 10 0 chr12 42434184 42434475 -101848014 - AluY SINE Alu -15 296 3 29 28 0 0 chr12 42434529 42434565 -101847924 + AT_rich Low_complexity Low_complexity 1 36 0 2378 89 0 6 chr12 42434869 42435182 -101847307 - AluSq SINE Alu -2 311 1 214 291 39 87 chr12 42436233 42436360 -101846129 + MIR SINE MIR 63 183 -79 23 33 0 0 chr12 42437119 42437149 -101845340 + AT_rich Low_complexity Low_complexity 1 30 0 253 307 48 84 chr12 42438319 42438485 -101844004 - MIR3 SINE MIR -10 198 39 262 320 99 39 chr12 42438562 42438743 -101843746 - MIR SINE MIR -50 212 21 27 0 0 0 chr12 42439144 42439171 -101843318 + AT_rich Low_complexity Low_complexity 1 27 0 2055 109 24 3 chr12 42439894 42440187 -101842302 + AluSg SINE Alu 1 299 -11 302 0 26 0 chr12 42440943 42440981 -101841508 + (TG)n Simple_repeat Simple_repeat 1 39 0 734 317 41 53 chr12 42441442 42441761 -101840728 + L2 LINE L2 2481 2795 -519 225 315 83 28 chr12 42441993 42442101 -101840388 + L2 LINE L2 3178 3291 -22 21 0 0 0 chr12 42442110 42442131 -101840358 + AT_rich Low_complexity Low_complexity 1 21 0 333 322 93 29 chr12 42442819 42443024 -101839465 - L2 LINE L2 -6 3266 3049 1942 156 0 9 chr12 42443296 42443611 -101838878 - AluJb SINE Alu 0 312 1 492 45 0 15 chr12 42444152 42444212 -101838277 + L1PA8 LINE L1 6095 6167 -5 415 0 0 0 chr12 42444212 42444258 -101838231 + (TAA)n Simple_repeat Simple_repeat 3 180 0 2163 92 0 0 chr12 42445639 42445967 -101836522 - AluY SINE Alu 0 328 1 422 321 22 8 chr12 42446449 42446583 -101835906 + MIR SINE MIR 29 164 -98 495 282 170 5 chr12 42446675 42446881 -101835608 - MIR SINE MIR 0 262 23 21 0 0 0 chr12 42447336 42447357 -101835132 + AT_rich Low_complexity Low_complexity 1 21 0 209 159 23 0 chr12 42448264 42448308 -101834181 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 241 177 48 0 chr12 42450980 42451042 -101831447 + (TA)n Simple_repeat Simple_repeat 1 65 0 1655 116 0 17 chr12 42452032 42452265 -101830224 - AluSq SINE Alu -84 229 1 21 0 0 0 chr12 42452590 42452611 -101829878 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr12 42452693 42452739 -101829750 + AT_rich Low_complexity Low_complexity 1 46 0 1167 49 18 0 chr12 42452895 42453058 -101829431 + (TTCC)n Simple_repeat Simple_repeat 3 168 0 1052 213 9 0 chr12 42453084 42453295 -101829194 - AluJo SINE Alu -15 297 85 250 214 14 86 chr12 42453295 42453365 -101829124 - FRAM SINE Alu -52 114 50 21 0 0 0 chr12 42453821 42453842 -101828647 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr12 42453921 42453956 -101828533 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr12 42455951 42455983 -101826506 + AT_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr12 42456587 42456608 -101825881 + (TA)n Simple_repeat Simple_repeat 2 22 0 261 313 72 60 chr12 42457052 42457218 -101825271 - MIR SINE MIR -11 251 84 442 296 57 40 chr12 42459210 42459434 -101823055 - MIR SINE MIR -20 242 16 301 283 147 23 chr12 42459832 42460009 -101822480 + MIR SINE MIR 50 248 -14 412 320 14 41 chr12 42461642 42461789 -101820700 + MIR3 SINE MIR 3 145 -63 623 301 148 37 chr12 42461810 42462216 -101820273 - L2 LINE L2 0 3313 2863 288 305 116 0 chr12 42462434 42462529 -101819960 - L2 LINE L2 -10 3262 3157 26 0 0 0 chr12 42462595 42462621 -101819868 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr12 42462860 42462893 -101819596 + AT_rich Low_complexity Low_complexity 1 33 0 37 0 0 0 chr12 42463504 42463541 -101818948 + AT_rich Low_complexity Low_complexity 1 37 0 4735 99 40 3 chr12 42463547 42464256 -101818233 - L1MA1 LINE L1 -10 6292 5558 633 220 73 6 chr12 42465647 42465824 -101816665 + MER5A DNA MER1_type 1 189 0 576 251 217 0 chr12 42466373 42466636 -101815853 + MER5C DNA MER1_type 1 320 -4 26 0 0 0 chr12 42466962 42466988 -101815501 + AT_rich Low_complexity Low_complexity 1 26 0 808 225 46 8 chr12 42467169 42467409 -101815080 + L1MA6 LINE L1 6052 6300 0 530 283 25 40 chr12 42468913 42469111 -101813378 + L2 LINE L2 3118 3312 -1 28 61 0 0 chr12 42469962 42470011 -101812478 + AT_rich Low_complexity Low_complexity 1 49 0 818 163 29 38 chr12 42471608 42471817 -101810672 - L1M4 LINE L1 -955 5191 4985 2007 114 0 13 chr12 42471817 42472115 -101810374 - AluSg SINE Alu -16 294 1 728 286 82 43 chr12 42472158 42472487 -101810002 - L2 LINE L2 -2 3311 2970 4434 91 19 34 chr12 42472749 42473172 -101809317 + PABL_A LTR ERV1 1 412 -248 2259 107 0 0 chr12 42473172 42473472 -101809017 + AluY SINE Alu 1 300 -11 4434 91 19 34 chr12 42473472 42473717 -101808772 + PABL_A LTR ERV1 412 659 -1 212 300 43 0 chr12 42473770 42473840 -101808649 - L2 LINE L2 -307 3006 2934 952 97 0 8 chr12 42473848 42473982 -101808507 - THE1C LTR MaLR 0 375 243 1150 147 23 68 chr12 42473982 42474289 -101808200 + LTR17 LTR ERV1 1 293 -487 1768 212 87 18 chr12 42474770 42475370 -101807119 + MER67C LTR ERV1 1 710 0 201 275 11 33 chr12 42475673 42475764 -101806725 + CT-rich Low_complexity Low_complexity 4 92 0 23 0 0 0 chr12 42475792 42475815 -101806674 + AT_rich Low_complexity Low_complexity 1 23 0 390 342 79 31 chr12 42475911 42476265 -101806224 + MER115 DNA AcHobo 2 372 -321 538 259 79 5 chr12 42476322 42476511 -101805978 + MER115 DNA AcHobo 466 668 -25 220 311 0 0 chr12 42476531 42476592 -101805897 + MIR SINE MIR 86 146 -116 359 281 59 37 chr12 42477085 42477220 -101805269 - MIR SINE MIR -51 211 74 1946 113 3 3 chr12 42477734 42478043 -101804446 - AluSc SINE Alu 0 309 1 375 302 8 48 chr12 42479249 42479375 -101803114 - MIR3 SINE MIR -85 123 3 24 67 0 0 chr12 42480644 42480689 -101801800 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr12 42480776 42480797 -101801692 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr12 42481059 42481090 -101801399 + AT_rich Low_complexity Low_complexity 1 31 0 221 266 142 18 chr12 42481199 42481312 -101801177 - MIR SINE MIR -14 248 122 962 75 100 6 chr12 42481698 42481858 -101800631 + L1MA4A LINE L1 6125 6299 -4 210 417 92 0 chr12 42482297 42482417 -101800072 - L2 LINE L2 0 3272 3142 1108 157 37 46 chr12 42482601 42482817 -101799672 + MER67D LTR ERV1 1 214 -300 2111 108 24 3 chr12 42482827 42483122 -101799367 + AluSx SINE Alu 1 301 -11 379 321 15 15 chr12 42484126 42484257 -101798232 + L2 LINE L2 3141 3271 -1 497 65 0 39 chr12 42485730 42485807 -101796682 - L1PA6 LINE L1 0 6154 6081 199 323 31 21 chr12 42485858 42485954 -101796535 - MIR3 SINE MIR -27 181 85 1205 261 15 9 chr12 42487598 42487927 -101794562 - LTR43 LTR ERV1 -144 458 128 771 233 192 4 chr12 42488426 42488697 -101793792 + MER5C DNA MER1_type 1 322 -2 373 324 153 0 chr12 42488697 42488862 -101793627 + MIR SINE MIR 13 203 -59 2158 96 34 0 chr12 42488869 42489162 -101793327 - AluSq SINE Alu -10 303 1 30 0 0 0 chr12 42489166 42489196 -101793293 + AT_rich Low_complexity Low_complexity 1 30 0 392 276 59 35 chr12 42491060 42491230 -101791259 + MER5B DNA MER1_type 4 177 -1 636 224 92 6 chr12 42492098 42492272 -101790217 - MER53 DNA DNA 0 189 1 25 31 0 0 chr12 42492418 42492450 -101790039 + AT_rich Low_complexity Low_complexity 1 32 0 1526 172 10 20 chr12 42492937 42493233 -101789256 - MER67C LTR ERV1 -2 708 416 294 29 0 0 chr12 42494117 42494152 -101788337 + (TAA)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr12 42494651 42494673 -101787816 + AT_rich Low_complexity Low_complexity 1 22 0 342 231 59 83 chr12 42494956 42495125 -101787364 + L1MC4a LINE L1 3829 3993 -2153 2016 110 28 14 chr12 42495129 42495419 -101787070 + AluSx SINE Alu 1 294 -18 747 172 83 12 chr12 42495421 42495540 -101786949 - L1MDa LINE L1 -6339 201 65 1978 152 64 31 chr12 42495540 42495960 -101786529 + Tigger2a DNA MER2_type 1 434 0 747 172 83 12 chr12 42495960 42496009 -101786480 - L1MDa LINE L1 -6475 65 21 360 320 73 21 chr12 42496316 42496763 -101785726 + L1MC4a LINE L1 4054 4521 -1625 758 209 14 0 chr12 42496767 42496906 -101785583 - MER68 LTR ERV1 -10 552 412 1931 268 103 64 chr12 42496907 42498072 -101784417 + L1MC4a LINE L1 5303 6522 -1286 1270 209 12 40 chr12 42498072 42498393 -101784096 + AluJo SINE Alu 1 312 0 1931 268 103 64 chr12 42498393 42498494 -101783995 + L1MC4a LINE L1 6522 6618 -1190 279 240 33 8 chr12 42498495 42498616 -101783873 + (TA)n Simple_repeat Simple_repeat 2 125 0 922 261 67 69 chr12 42498637 42499540 -101782949 + L1MC4 LINE L1 6637 7495 -547 245 261 65 76 chr12 42499693 42499785 -101782704 + MER5A DNA MER1_type 98 188 -1 261 83 0 0 chr12 42499975 42500011 -101782478 + (TCC)n Simple_repeat Simple_repeat 1 36 0 1275 239 27 24 chr12 42500996 42501326 -101781163 - LTR43 LTR ERV1 -144 458 128 359 118 15 15 chr12 42501460 42501528 -101780961 - LTR60 LTR ERV1 -518 68 1 242 341 34 0 chr12 42502465 42502553 -101779936 + MIR SINE MIR 93 183 -79 26 30 0 0 chr12 42504117 42504150 -101778339 + AT_rich Low_complexity Low_complexity 1 33 0 185 281 0 73 chr12 42504263 42504359 -101778130 - MIR SINE MIR -50 212 124 250 289 60 12 chr12 42504506 42504589 -101777900 + L2 LINE L2 3219 3305 -8 809 340 53 20 chr12 42504909 42505607 -101776882 + L2 LINE L2 2352 3079 -234 315 340 59 0 chr12 42505759 42505912 -101776577 + MIR SINE MIR 89 250 -12 479 236 132 0 chr12 42505956 42506062 -101776427 + FLAM_A SINE Alu 5 124 -9 1871 110 7 55 chr12 42519230 42519522 -101762967 - AluSx SINE Alu 0 312 35 360 23 0 0 chr12 42519618 42519661 -101762828 - MADE1 DNA Mariner -37 43 1 355 234 117 41 chr12 42519788 42519933 -101762556 - MIR SINE MIR -17 245 90 342 326 86 0 chr12 42520195 42520370 -101762119 - L2 LINE L2 -17 3296 3107 843 333 81 26 chr12 42520499 42521079 -101761410 - L2 LINE L2 -406 2908 2297 2318 87 0 3 chr12 42521680 42521979 -101760510 + AluSc SINE Alu 1 298 -11 23 68 0 0 chr12 42523241 42523285 -101759204 + AT_rich Low_complexity Low_complexity 1 44 0 2215 121 3 6 chr12 42523752 42524065 -101758424 - AluSx SINE Alu 0 312 1 218 211 19 19 chr12 42524138 42524190 -101758299 + L2 LINE L2 3189 3240 -73 289 277 72 0 chr12 42524385 42524468 -101758021 - MIR SINE MIR -95 167 79 228 336 88 8 chr12 42524923 42525048 -101757441 + L2 LINE L2 2926 3060 -212 1757 155 99 0 chr12 42526242 42526526 -101755963 - AluJb SINE Alu 0 312 1 1798 168 147 21 chr12 42529435 42529815 -101752674 - MSTA LTR MaLR 0 428 1 258 277 19 71 chr12 42529918 42530073 -101752416 + L2 LINE L2 3094 3240 -73 198 246 23 92 chr12 42532625 42532755 -101749734 + L2 LINE L2 3120 3240 -73 248 196 20 0 chr12 42534565 42534616 -101747873 - MADE1 DNA Mariner 0 80 29 262 176 20 0 chr12 42537519 42537570 -101744919 - MADE1 DNA Mariner 0 80 29 212 210 32 113 chr12 42538480 42538604 -101743885 + L2 LINE L2 3121 3234 -79 26 0 0 0 chr12 42539506 42539532 -101742957 + AT_rich Low_complexity Low_complexity 1 26 0 1159 198 37 30 chr12 42539747 42539883 -101742606 + L1MA6 LINE L1 5999 6133 -167 2685 106 28 8 chr12 42539883 42540240 -101742249 - THE1B LTR MaLR 0 364 1 1159 198 37 30 chr12 42540240 42540390 -101742099 + L1MA6 LINE L1 6133 6296 -4 468 278 26 42 chr12 42541896 42542087 -101740402 + L2 LINE L2 3117 3304 -9 1053 100 7 0 chr12 42544420 42544570 -101737919 - L1PA8A LINE L1 -169 5962 5812 186 43 0 0 chr12 42545380 42545403 -101737086 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 242 219 27 0 chr12 42547196 42547269 -101735220 - L1MD3 LINE L1 0 7995 7921 210 130 74 37 chr12 42547526 42547580 -101734909 + CT-rich Low_complexity Low_complexity 5 60 0 194 218 0 18 chr12 42548514 42548569 -101733920 + CT-rich Low_complexity Low_complexity 2 55 0 189 0 0 0 chr12 42548651 42548672 -101733817 + (A)n Simple_repeat Simple_repeat 1 21 0 21 82 0 0 chr12 42550028 42550077 -101732412 + AT_rich Low_complexity Low_complexity 1 49 0 318 87 0 0 chr12 42550553 42550599 -101731890 + (T)n Simple_repeat Simple_repeat 1 46 0 209 293 0 9 chr12 42553162 42553278 -101729211 + CT-rich Low_complexity Low_complexity 3 117 0 536 204 0 33 chr12 42553305 42553486 -101729003 + CT-rich Low_complexity Low_complexity 3 177 0 180 0 0 0 chr12 42553727 42553747 -101728742 + (T)n Simple_repeat Simple_repeat 1 20 0 243 220 17 17 chr12 42555490 42555549 -101726940 + CT-rich Low_complexity Low_complexity 3 61 0 21 0 0 0 chr12 42558436 42558457 -101724032 + AT_rich Low_complexity Low_complexity 1 21 0 209 293 0 9 chr12 42560161 42560277 -101722212 + CT-rich Low_complexity Low_complexity 3 117 0 515 210 0 33 chr12 42560304 42560485 -101722004 + CT-rich Low_complexity Low_complexity 3 177 0 252 59 0 0 chr12 42563018 42563052 -101719437 + (TG)n Simple_repeat Simple_repeat 1 34 0 1418 39 0 11 chr12 42568497 42568543 -101713946 + (TTTC)n Simple_repeat Simple_repeat 1 225 0 1418 39 0 11 chr12 42568543 42568725 -101713764 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 8815 55 1 0 chr12 42568810 42570630 -101711859 - L1PA5 LINE L1 -3 6151 4334 189 0 0 0 chr12 42572564 42572585 -101709904 + (T)n Simple_repeat Simple_repeat 1 21 0 255 209 15 0 chr12 42573135 42573202 -101709287 - L1MD3 LINE L1 0 7995 7928 273 57 0 0 chr12 42573528 42573563 -101708926 + (TCC)n Simple_repeat Simple_repeat 2 36 0 207 182 0 0 chr12 42576031 42576064 -101706425 + (TG)n Simple_repeat Simple_repeat 1 33 0 1914 130 22 0 chr12 42576669 42576938 -101705551 + AluSx SINE Alu 1 275 -37 665 294 48 16 chr12 42577237 42577485 -101705004 - MIR SINE MIR 0 262 7 309 155 0 0 chr12 42578177 42578235 -101704254 + (TA)n Simple_repeat Simple_repeat 2 59 0 22 35 0 0 chr12 42578265 42578294 -101704195 + AT_rich Low_complexity Low_complexity 1 29 0 1891 140 7 33 chr12 42578294 42578594 -101703895 - AluSx SINE Alu -20 292 1 25 51 0 0 chr12 42580266 42580305 -101702184 + AT_rich Low_complexity Low_complexity 1 39 0 11114 186 15 20 chr12 42580425 42583614 -101698875 - L1PA16 LINE L1 -49 6117 2947 780 140 0 0 chr12 42583615 42583722 -101698767 - U6 snRNA snRNA 0 107 1 709 275 48 54 chr12 42583727 42584165 -101698324 - L1PA15-16 LINE L1 -3544 3305 2865 210 229 0 0 chr12 42584645 42584693 -101697796 + CT-rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr12 42585538 42585566 -101696923 + AT_rich Low_complexity Low_complexity 1 28 0 1805 129 0 0 chr12 42585866 42586114 -101696375 - AluSx SINE Alu -64 248 1 211 320 188 6 chr12 42586134 42586315 -101696174 - MIR SINE MIR -11 251 38 180 111 0 0 chr12 42586315 42586342 -101696147 + (TAA)n Simple_repeat Simple_repeat 2 28 0 806 282 60 5 chr12 42586363 42586579 -101695910 - MIR SINE MIR -26 236 9 946 201 70 4 chr12 42588933 42589162 -101693327 + MER58B DNA MER1_type 74 317 -24 188 289 216 31 chr12 42589244 42589438 -101693051 + L3 LINE CR1 1301 1530 -47 1222 198 8 38 chr12 42589459 42589722 -101692767 - MLT1B LTR MaLR -4 386 132 343 230 44 89 chr12 42590103 42590238 -101692251 + MLT1H LTR MaLR 421 549 0 197 122 49 0 chr12 42590600 42590641 -101691848 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 201 119 48 0 chr12 42590785 42590827 -101691662 + (TA)n Simple_repeat Simple_repeat 1 44 0 432 348 59 31 chr12 42592704 42593026 -101689463 + L2 LINE L2 2914 3244 -28 326 195 12 0 chr12 42593071 42593153 -101689336 + (TGGA)n Simple_repeat Simple_repeat 2 84 0 546 79 0 0 chr12 42593174 42593250 -101689239 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 459 189 24 0 chr12 42593277 42593404 -101689085 + (TGGA)n Simple_repeat Simple_repeat 3 132 0 186 236 0 0 chr12 42593684 42593739 -101688750 + (TCCA)n Simple_repeat Simple_repeat 3 57 0 247 258 151 43 chr12 42594480 42594573 -101687916 - MIR SINE MIR -86 122 20 24 39 0 0 chr12 42595051 42595077 -101687412 + AT_rich Low_complexity Low_complexity 1 26 0 1230 206 12 4 chr12 42595077 42595334 -101687155 - L1PA3 LINE L1 -3 6152 5894 484 206 118 29 chr12 42596125 42596295 -101686194 + MIR SINE MIR 6 190 -72 521 285 5 55 chr12 42596672 42596769 -101685720 - L2 LINE L2 0 3313 3230 2426 178 77 23 chr12 42596769 42597248 -101685241 - MLT1D LTR MaLR 0 505 1 521 285 5 55 chr12 42597248 42597350 -101685139 - L2 LINE L2 -83 3230 3124 310 251 96 54 chr12 42597527 42597694 -101684795 - L2 LINE L2 -491 2823 2650 419 301 42 34 chr12 42598144 42598349 -101684140 - MIR SINE MIR -27 235 30 280 277 147 23 chr12 42598761 42598938 -101683551 + MIR SINE MIR 50 248 -14 529 231 37 0 chr12 42599420 42599528 -101682961 - AluJb SINE Alu -193 119 8 1039 159 0 22 chr12 42599541 42599723 -101682766 - AluJb SINE Alu -1 311 134 955 233 46 21 chr12 42603033 42603273 -101679216 - MIR SINE MIR 0 262 17 1666 170 0 17 chr12 42603651 42604027 -101678462 - AluSq SINE Alu 0 371 1 667 241 58 126 chr12 42604096 42604459 -101678030 + MLT1F1 LTR MaLR 4 359 -208 319 229 12 60 chr12 42604828 42604911 -101677578 - MER81 DNA DNA -12 102 24 407 234 80 7 chr12 42605274 42605411 -101677078 + MIR SINE MIR 81 227 -35 335 267 26 26 chr12 42605405 42605521 -101676968 + MER5A DNA MER1_type 24 139 -50 * 272 269 0 43 chr12 42606481 42606574 -101675915 + MIR3 SINE MIR 118 206 -2 769 162 172 59 chr12 42606840 42607014 -101675475 - MER20 DNA MER1_type 0 219 27 272 250 218 32 chr12 42607629 42607785 -101674704 + L2 LINE L2 2915 3099 -173 1115 209 87 9 chr12 42607876 42608338 -101674151 + MLT1F LTR MaLR 3 529 -13 232 78 255 0 chr12 42608815 42608866 -101673623 + AluJ/FRAM SINE Alu 217 280 -22 267 54 0 0 chr12 42608872 42608909 -101673580 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 207 184 0 0 chr12 42608961 42608999 -101673490 - L2 LINE L2 -10 3303 3266 1759 201 65 40 chr12 42609032 42609480 -101673009 - MLT1C LTR MaLR -4 463 5 811 215 51 0 chr12 42609537 42609751 -101672738 + AluSp SINE Alu 2 226 -87 556 76 0 0 chr12 42612647 42612713 -101669776 - AluSc SINE Alu -90 219 154 319 159 63 32 chr12 42612715 42612778 -101669711 + MLT1F1 LTR MaLR 325 389 -1 1044 237 83 66 chr12 42612779 42613201 -101669288 + L1ME3A LINE L1 5737 6165 -5 1219 172 0 27 chr12 42613213 42613434 -101669055 + AluJb SINE Alu 87 301 -11 477 234 17 57 chr12 42613782 42613957 -101668532 + L1MD1 LINE L1 4599 4766 -1380 * 3131 160 22 46 chr12 42613955 42614588 -101667901 + L1MD1 LINE L1 5350 5967 -275 413 240 21 42 chr12 42614589 42614685 -101667804 + FLAM_A SINE Alu 2 95 -47 1856 115 0 0 chr12 42615120 42615380 -101667109 - AluSq SINE Alu -53 260 1 341 272 89 95 chr12 42615712 42616215 -101666274 + L1M2 LINE L1 760 1259 -5590 352 291 34 115 chr12 42616448 42616891 -101665598 - L2 LINE L2 -831 2483 2077 970 102 109 0 chr12 42617596 42617743 -101664746 + L1MA1 LINE L1 6140 6302 0 21 0 0 0 chr12 42617743 42617764 -101664725 + AT_rich Low_complexity Low_complexity 1 21 0 2321 185 27 59 chr12 42619459 42619983 -101662506 - MER67D LTR ERV1 0 514 8 558 239 72 17 chr12 42620345 42620525 -101661964 + L1MA10 LINE L1 6145 6334 0 890 115 49 83 chr12 42620695 42620911 -101661578 + L1MA8 LINE L1 5948 6167 -138 21 0 0 0 chr12 42620957 42620978 -101661511 + AT_rich Low_complexity Low_complexity 1 21 0 225 178 0 0 chr12 42622604 42622649 -101659840 - LTR66 LTR ERVL -171 439 395 * 242 170 0 0 chr12 42622614 42622661 -101659828 + LTR66 LTR ERVL 394 440 -170 1977 135 0 3 chr12 42622704 42622986 -101659503 - AluSx SINE Alu -31 281 1 1098 31 0 0 chr12 42624236 42624363 -101658126 - L1PA4 LINE L1 -3 6152 6026 413 332 58 17 chr12 42624717 42625009 -101657480 - L2 LINE L2 -784 2530 2227 283 128 58 0 chr12 42626287 42626373 -101656116 + (TA)n Simple_repeat Simple_repeat 2 92 0 2312 109 0 0 chr12 42627801 42628114 -101654375 + AluSq SINE Alu 1 313 0 22 0 0 0 chr12 42628759 42628781 -101653708 + AT_rich Low_complexity Low_complexity 1 22 0 282 298 142 51 chr12 42631101 42631511 -101650978 + L2 LINE L2 1936 2382 -932 1733 107 4 12 chr12 42631559 42631811 -101650678 + AluSc SINE Alu 44 293 -16 448 359 20 34 chr12 42633403 42633701 -101648788 - ERVL LTR ERVL -2075 3689 3396 573 279 164 28 chr12 42634158 42634445 -101648044 - MLT1J LTR MaLR -33 478 153 186 321 24 36 chr12 42634500 42634584 -101647905 - MER5B DNA MER1_type -17 161 79 262 331 50 8 chr12 42634584 42634705 -101647784 - ERVL LTR ERVL -3175 2589 2464 1092 279 97 19 chr12 42634705 42635118 -101647371 + LTR16A LTR ERVL 1 445 -5 315 339 8 16 chr12 42635123 42635247 -101647242 - ERVL LTR ERVL -3225 2429 2307 436 297 40 20 chr12 42635604 42635752 -101646737 + L2 LINE L2 3162 3312 -1 25 31 0 0 chr12 42635851 42635883 -101646606 + AT_rich Low_complexity Low_complexity 1 32 0 401 295 26 51 chr12 42636031 42636127 -101646362 + MIR SINE MIR 9 101 -161 3931 168 46 1 chr12 42636127 42636822 -101645667 - L1MB7 LINE L1 -5 6179 5454 401 295 26 51 chr12 42636822 42636881 -101645608 + MIR SINE MIR 101 160 -102 24 77 0 0 chr12 42637244 42637296 -101645193 + AT_rich Low_complexity Low_complexity 1 52 0 203 250 10 96 chr12 42637564 42637668 -101644821 + MIR SINE MIR 143 237 -25 1789 188 3 3 chr12 42639389 42639687 -101642802 + AluJo SINE Alu 1 298 -14 364 220 76 50 chr12 42639709 42639883 -101642606 - MLT1I LTR MaLR 0 409 278 240 319 121 0 chr12 42639912 42640003 -101642486 - MLT1I LTR MaLR -196 213 112 690 233 7 31 chr12 42640081 42640272 -101642217 + LTR28 LTR ERV1 1 174 -462 630 266 47 22 chr12 42640293 42640537 -101641952 + MER52A LTR ERV1 286 1229 -29 1975 150 55 33 chr12 42640882 42641249 -101641240 - THE1C LTR MaLR 0 375 1 10479 127 39 7 chr12 42641249 42642781 -101639708 - THE1C-int LTR MaLR 0 1580 1 2002 155 52 30 chr12 42642781 42643148 -101639341 - THE1C LTR MaLR 0 375 1 356 331 159 21 chr12 42643165 42643455 -101639034 - L2 LINE L2 -412 2902 2573 395 235 173 39 chr12 42643503 42643682 -101638807 + MER93a LTR ERV1 200 402 0 606 223 88 31 chr12 42643716 42643927 -101638562 + L1MC5 LINE L1 7028 7248 -728 262 242 48 48 chr12 42643992 42644116 -101638373 + L1MC5 LINE L1 7235 7358 -603 261 310 100 26 chr12 42644170 42644480 -101638009 + L1MC5 LINE L1 7453 7785 -176 1471 210 52 35 chr12 42645461 42645662 -101636827 - MLT1A1 LTR MaLR 0 365 154 2108 124 0 17 chr12 42645662 42645961 -101636528 - AluSq SINE Alu -19 294 1 1471 210 52 35 chr12 42645961 42646106 -101636383 - MLT1A1 LTR MaLR -211 154 13 274 300 30 10 chr12 42647081 42647181 -101635308 - L2 LINE L2 -265 3048 2947 191 36 36 0 chr12 42647203 42647231 -101635258 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 209 291 38 0 chr12 42647276 42647355 -101635134 - L2 LINE L2 -469 2845 2764 187 269 96 0 chr12 42647390 42647442 -101635047 - L2 LINE L2 -625 2689 2633 2169 171 45 88 chr12 42649193 42649725 -101632764 + LTR22 LTR ERVK 1 509 0 937 154 23 11 chr12 42650368 42650543 -101631946 + MER73 LTR ERVL 1 177 -467 490 165 12 12 chr12 42650553 42650638 -101631851 + MLT1D LTR MaLR 324 408 -97 2807 152 31 6 chr12 42650641 42651122 -101631367 + MER73 LTR ERVL 152 644 0 450 319 22 7 chr12 42651339 42651477 -101631012 - MIR3 SINE MIR -49 159 20 1336 254 39 16 chr12 42651564 42651946 -101630543 + L1ME3A LINE L1 5567 5957 -213 1113 164 122 77 chr12 42652095 42652381 -101630108 + MER46C DNA MER2_type 17 315 -23 1678 212 49 47 chr12 42652401 42652861 -101629628 + MLT1D LTR MaLR 1 467 0 248 216 9 27 chr12 42652863 42652974 -101629515 + (TA)n Simple_repeat Simple_repeat 1 109 0 2019 122 31 3 chr12 42653045 42653339 -101629150 + AluSg SINE Alu 1 302 -8 251 53 0 26 chr12 42653342 42653380 -101629109 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 299 181 184 11 chr12 42653411 42653512 -101628977 - MLT1H LTR MaLR 0 549 439 454 291 215 16 chr12 42653524 42653775 -101628714 - MLT1H LTR MaLR -226 323 23 1459 108 24 5 chr12 42654017 42654189 -101628300 - AluY SINE Alu -10 301 123 393 39 0 0 chr12 42654189 42654240 -101628249 + (TG)n Simple_repeat Simple_repeat 2 52 0 1459 108 24 5 chr12 42654240 42654280 -101628209 - AluY SINE Alu -188 123 85 3447 127 63 14 chr12 42654422 42655058 -101627431 - L1MA6 LINE L1 0 6300 5634 5695 155 12 15 chr12 42655060 42656428 -101626061 + L1M2 LINE L1 4332 5697 -603 1214 322 132 20 chr12 42657637 42658729 -101623760 - L2 LINE L2 -4 3309 2104 4062 138 25 24 chr12 42659571 42660293 -101622196 - L1MA9 LINE L1 -5 6307 5585 986 236 42 21 chr12 42660836 42661077 -101621412 - MIR SINE MIR 0 262 17 339 25 0 0 chr12 42662038 42662078 -101620411 + (TA)n Simple_repeat Simple_repeat 2 41 0 191 170 21 0 chr12 42662613 42662660 -101619829 + (TA)n Simple_repeat Simple_repeat 1 48 0 2911 210 92 14 chr12 42664285 42665407 -101617082 + L1M4 LINE L1 4459 5664 -520 2009 191 79 85 chr12 42665385 42665887 -101616602 + L1MB7 LINE L1 5531 6030 -154 * 2298 162 65 69 chr12 42665887 42666394 -101616095 + MLT1D LTR MaLR 1 505 0 2009 191 79 85 chr12 42666394 42666539 -101615950 + L1MB7 LINE L1 6030 6174 -10 254 331 22 66 chr12 42667217 42667353 -101615136 - MLT1J LTR MaLR -68 443 314 21734 171 54 18 chr12 42667524 42671355 -101611134 - L1PA11 LINE L1 0 7612 3920 433 143 39 0 chr12 42671355 42671432 -101611057 - MADE1 DNA Mariner 0 80 1 21734 171 54 18 chr12 42671432 42673898 -101608591 - L1PA11 LINE L1 -3692 3920 7 493 206 155 0 chr12 42674138 42674235 -101608254 + MER44D DNA MER2_type 1 382 -227 367 187 0 49 chr12 42674246 42674332 -101608157 + L1P3 LINE L1 212 1410 -5588 945 181 50 36 chr12 42674332 42674553 -101607936 + MER44D DNA MER2_type 382 605 0 239 186 0 0 chr12 42674719 42674762 -101607727 - MLT1J2 LTR MaLR -326 124 82 199 342 13 0 chr12 42675245 42675324 -101607165 - L3 LINE CR1 -151 1426 1347 220 309 98 0 chr12 42676149 42676272 -101606217 - MIR SINE MIR -48 214 80 2014 105 0 41 chr12 42677047 42677365 -101605124 - AluSx SINE Alu 0 306 1 225 0 0 0 chr12 42677426 42677451 -101605038 + (CA)n Simple_repeat Simple_repeat 2 26 0 378 147 14 28 chr12 42677582 42677725 -101604764 + (TA)n Simple_repeat Simple_repeat 1 141 0 1945 207 109 15 chr12 42678129 42678718 -101603771 + LTR48B LTR ERV1 1 644 0 1011 333 123 27 chr12 42678870 42679602 -101602887 + L2 LINE L2 2150 2951 -363 2878 122 125 119 chr12 42679602 42680888 -101601601 + pTR5 LTR ERV1 744 2417 -21 258 333 9 18 chr12 42680888 42681002 -101601487 + L2 LINE L2 2946 3058 -255 1875 141 10 17 chr12 42681787 42682085 -101600404 + AluJo SINE Alu 1 296 -16 238 338 103 24 chr12 42682394 42682607 -101599882 + L2 LINE L2 2829 3058 -214 694 354 59 29 chr12 42682869 42683440 -101599049 - L2 LINE L2 -257 3015 2431 2296 54 6 54 chr12 42683658 42683972 -101598517 + AluY SINE Alu 1 299 -12 217 132 0 0 chr12 42684511 42684549 -101597940 + (A)n Simple_repeat Simple_repeat 1 38 0 2090 128 138 8 chr12 42684965 42685341 -101597148 - MSTB1 LTR MaLR -4 428 4 1600 190 31 3 chr12 42685508 42685798 -101596691 + AluJb SINE Alu 1 298 -14 2236 91 37 0 chr12 42686034 42686331 -101596158 + AluSq SINE Alu 1 308 -5 2085 243 109 12 chr12 42686917 42687571 -101594918 - MER50 LTR ERV1 -1 733 17 3152 149 12 43 chr12 42687699 42688277 -101594212 - MER34B LTR ERV1 -5 560 1 331 191 36 0 chr12 42689104 42689188 -101593301 + L1MB7 LINE L1 6091 6177 -7 204 222 0 0 chr12 42689442 42689487 -101593002 + A-rich Low_complexity Low_complexity 5 49 0 885 32 32 0 chr12 42689581 42689705 -101592784 + (TTTC)n Simple_repeat Simple_repeat 2 129 0 1904 143 4 0 chr12 42689705 42689984 -101592505 - AluSx SINE Alu -32 280 1 1001 321 81 25 chr12 42690930 42691525 -101590964 + MERVL LTR ERVL 4069 4696 -789 494 213 8 8 chr12 42691539 42691666 -101590823 - MER104 DNA Tc2 -7 173 47 288 0 0 0 chr12 42691861 42691893 -101590596 + (TTA)n Simple_repeat Simple_repeat 2 33 0 253 208 21 0 chr12 42692259 42692307 -101590182 + MERVL LTR ERVL 4903 4951 -813 440 301 46 32 chr12 42692382 42692598 -101589891 + MERVL LTR ERVL 5043 5261 -503 384 22 0 0 chr12 42692772 42692817 -101589672 + (TG)n Simple_repeat Simple_repeat 2 46 0 1209 168 0 38 chr12 42692818 42693027 -101589462 - AluJo SINE Alu -31 281 81 408 243 107 45 chr12 42693106 42693283 -101589206 - MLT1J LTR MaLR -35 476 289 454 213 35 78 chr12 42693836 42693977 -101588512 - MER58B DNA MER1_type -16 325 191 1435 254 79 29 chr12 42695234 42695883 -101586606 - L1M4 LINE L1 -919 5227 4547 1922 137 56 31 chr12 42696265 42696624 -101585865 - THE1C LTR MaLR 0 375 8 4121 101 5 3 chr12 42696624 42697201 -101585288 + MER41B LTR ERV1 1 578 -57 12658 53 1 1 chr12 42697221 42699585 -101582904 - L1PA5 LINE L1 -2 6152 3791 20342 100 10 9 chr12 42699586 42702492 -101579997 - L1PA5 LINE L1 -3223 2923 14 307 192 0 51 chr12 42702492 42702570 -101579919 + MER41A LTR ERV1 474 547 -7 536 218 40 98 chr12 42704453 42704678 -101577811 + MER58C DNA MER1_type 2 213 -2 441 58 159 0 chr12 42705069 42705138 -101577351 + MADE1 DNA Mariner 1 80 0 23 68 0 0 chr12 42707541 42707585 -101574904 + AT_rich Low_complexity Low_complexity 1 44 0 30 0 0 0 chr12 42707738 42707768 -101574721 + AT_rich Low_complexity Low_complexity 1 30 0 279 222 11 56 chr12 42708537 42708627 -101573862 + GA-rich Low_complexity Low_complexity 3 88 0 375 307 43 21 chr12 42708642 42708782 -101573707 - MIR SINE MIR -20 242 100 3394 185 36 18 chr12 42709170 42709884 -101572605 - LTR8A LTR ERV1 0 727 1 2476 207 14 21 chr12 42710346 42711053 -101571436 - LTR27 LTR ERV1 -2 634 3 4019 292 112 30 chr12 42711123 42713083 -101569406 + L2 LINE L2 1214 3313 0 2361 85 0 3 chr12 42713275 42713570 -101568919 - AluSq SINE Alu -14 299 6 1573 180 19 12 chr12 42713909 42714231 -101568258 - MER33 DNA MER1_type 0 324 1 34 42 0 0 chr12 42714255 42714303 -101568186 + AT_rich Low_complexity Low_complexity 1 48 0 2377 96 0 0 chr12 42714303 42714604 -101567885 - AluY SINE Alu -10 301 1 447 256 46 95 chr12 42714712 42714997 -101567492 + LTR37B LTR ERV1 198 468 0 212 234 0 0 chr12 42715591 42715638 -101566851 + GA-rich Low_complexity Low_complexity 2 48 0 254 307 132 9 chr12 42716509 42716623 -101565866 - MIR SINE MIR -43 219 92 490 277 86 22 chr12 42716796 42717063 -101565426 + LTR33A LTR ERVL 227 510 -13 1291 180 99 37 chr12 42717166 42717460 -101565029 - AluJb SINE Alu 0 312 1 209 323 40 20 chr12 42717609 42717708 -101564781 - MIR SINE MIR -72 190 90 1068 195 0 5 chr12 42718325 42718515 -101563974 + AluJo SINE Alu 11 199 -113 954 311 119 48 chr12 42718912 42719458 -101563031 - MLT1K LTR MaLR -2 586 2 635 167 0 0 chr12 42720381 42720495 -101561994 + L1M4 LINE L1 5681 5794 -380 415 141 0 0 chr12 42720507 42720578 -101561911 - L1PA16 LINE L1 -9 6157 6087 2394 141 5 8 chr12 42720610 42720986 -101561503 + THE1C LTR MaLR 1 375 0 10168 111 20 29 chr12 42720986 42722580 -101559909 + THE1C-int LTR MaLR 1 1580 0 2547 122 3 8 chr12 42722580 42722957 -101559532 + THE1C LTR MaLR 1 375 0 14029 139 32 7 chr12 42723522 42725881 -101556608 + Tigger1 DNA MER2_type 1 2418 0 21 0 0 0 chr12 42726678 42726699 -101555790 + AT_rich Low_complexity Low_complexity 1 21 0 205 342 26 0 chr12 42727058 42727134 -101555355 - L2 LINE L2 -556 2758 2681 319 313 73 50 chr12 42727996 42728175 -101554314 - L2 LINE L2 -217 3055 2873 355 243 54 0 chr12 42728558 42728632 -101553857 + MIR SINE MIR 185 262 0 25 31 0 0 chr12 42728632 42728664 -101553825 + AT_rich Low_complexity Low_complexity 1 32 0 291 298 0 39 chr12 42728740 42728844 -101553645 - L2 LINE L2 -4 3309 3210 749 342 199 29 chr12 42729887 42730957 -101551532 + L3 LINE CR1 275 1526 -51 243 157 0 0 chr12 42731835 42731886 -101550603 + T-rich Low_complexity Low_complexity 1 51 0 507 278 41 30 chr12 42732202 42732371 -101550118 + MIR SINE MIR 13 183 -79 21 71 0 0 chr12 42732889 42732931 -101549558 + AT_rich Low_complexity Low_complexity 1 42 0 344 303 48 48 chr12 42733398 42733563 -101548926 - HAL1 LINE L1 -25 2482 2318 988 238 92 61 chr12 42733741 42734069 -101548420 + MLT2B1 LTR ERVL 1 338 -182 301 268 10 31 chr12 42734055 42734152 -101548337 + MLT1C LTR MaLR 373 467 0 * 1506 130 19 31 chr12 42734155 42734416 -101548073 - L1M3 LINE L1 -466 5705 5448 206 123 70 18 chr12 42734606 42734720 -101547769 + (TA)n Simple_repeat Simple_repeat 2 121 0 394 311 98 37 chr12 42734736 42734984 -101547505 - L1M4 LINE L1 -2863 3283 3051 655 233 87 64 chr12 42734984 42735203 -101547286 - MER58A DNA MER1_type 0 224 1 394 311 98 37 chr12 42735203 42736029 -101546460 - L1M4 LINE L1 -3095 3051 2144 525 303 104 37 chr12 42736319 42737056 -101545433 - HAL1b LINE L1 -490 858 72 745 187 90 0 chr12 42738239 42738373 -101544116 + FRAM SINE Alu 1 146 -30 198 0 0 0 chr12 42738377 42738399 -101544090 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr12 42738971 42738993 -101543496 + AT_rich Low_complexity Low_complexity 1 22 0 2169 123 0 0 chr12 42739039 42739331 -101543158 + AluSx SINE Alu 1 292 -20 25 0 0 0 chr12 42739331 42739356 -101543133 + AT_rich Low_complexity Low_complexity 1 25 0 952 303 117 30 chr12 42739369 42740084 -101542405 - L2 LINE L2 -91 3222 2432 599 299 108 21 chr12 42740336 42740661 -101541828 - L2 LINE L2 -233 3080 2721 228 302 19 107 chr12 42742001 42742160 -101540329 - L2 LINE L2 -221 3051 2907 447 354 118 23 chr12 42742216 42742606 -101539883 - L2 LINE L2 -11 3302 2876 25 31 0 0 chr12 42742682 42742714 -101539775 + AT_rich Low_complexity Low_complexity 1 32 0 288 320 49 8 chr12 42742881 42743003 -101539486 - L2 LINE L2 -949 2365 2239 238 214 107 0 chr12 42743628 42743684 -101538805 - LTR16A LTR ERVL -8 442 381 240 287 11 0 chr12 42743689 42743783 -101538706 - L1ME LINE L1 -5270 800 706 381 165 10 68 chr12 42743940 42744043 -101538446 - L1ME LINE L1 -5510 560 464 1101 215 59 104 chr12 42744124 42744565 -101537924 - MLT1D LTR MaLR -44 461 41 1133 283 35 42 chr12 42744603 42745056 -101537433 - L1ME LINE L1 -5611 459 10 1122 249 63 34 chr12 42745065 42745768 -101536721 + L1M4 LINE L1 2683 3405 -2741 2726 140 7 14 chr12 42745863 42746292 -101536197 - MSTB LTR MaLR 0 426 1 1704 165 117 3 chr12 42746429 42746763 -101535726 + MSTD LTR MaLR 25 396 0 189 0 0 0 chr12 42747379 42747400 -101535089 + (TG)n Simple_repeat Simple_repeat 1 21 0 310 323 31 0 chr12 42748352 42748448 -101534041 + MIR SINE MIR 17 115 -93 2062 98 3 20 chr12 42748482 42748777 -101533712 - AluSp SINE Alu -2 311 22 186 310 69 0 chr12 42749651 42749709 -101532780 + L2 LINE L2 3205 3266 -6 756 0 22 0 chr12 42749924 42750014 -101532475 + (TTTTA)n Simple_repeat Simple_repeat 2 180 0 2085 61 3 90 chr12 42750014 42750324 -101532165 - AluY SINE Alu -1 372 1 251 273 15 30 chr12 42753920 42753986 -101528503 - MIR SINE MIR -56 152 88 227 320 30 0 chr12 42754155 42754255 -101528234 - L3 LINE CR1 -756 821 719 242 351 82 16 chr12 42754257 42754457 -101528032 + MIR SINE MIR 38 248 -14 337 280 15 61 chr12 42755550 42755682 -101526807 + MIR SINE MIR 135 260 -2 227 320 13 13 chr12 42756113 42756188 -101526301 + MIR SINE MIR 21 95 -113 498 297 169 16 chr12 42756386 42756941 -101525548 - L1ME4a LINE L1 -135 5986 5347 200 230 172 23 chr12 42757673 42757760 -101524729 + MIR SINE MIR 8 107 -155 2469 68 10 3 chr12 42757760 42758067 -101524422 - AluY SINE Alu -2 309 1 188 384 22 36 chr12 42758138 42758362 -101524127 + L2 LINE L2 2627 2847 -467 385 381 93 16 chr12 42758539 42758786 -101523703 + L2 LINE L2 3007 3272 0 408 266 56 42 chr12 42759210 42759353 -101523136 - MIR SINE MIR -57 205 61 195 42 0 0 chr12 42759637 42759661 -101522828 + (CA)n Simple_repeat Simple_repeat 2 25 0 23 54 0 0 chr12 42759739 42759776 -101522713 + AT_rich Low_complexity Low_complexity 1 37 0 2366 104 0 0 chr12 42759777 42760084 -101522405 + AluSg SINE Alu 1 307 -3 394 290 164 61 chr12 42760353 42760584 -101521905 - MIR SINE MIR -2 260 6 27 0 0 0 chr12 42761029 42761056 -101521433 + AT_rich Low_complexity Low_complexity 1 27 0 988 276 80 38 chr12 42761373 42761634 -101520855 - L1ME3A LINE L1 -8 6162 5873 814 158 0 0 chr12 42761634 42761767 -101520722 - FLAM_C SINE Alu 0 133 1 988 276 80 38 chr12 42761767 42761957 -101520532 - L1ME3A LINE L1 -297 5873 5692 2000 125 34 3 chr12 42761972 42762267 -101520222 - AluSq SINE Alu -9 304 1 431 255 121 64 chr12 42762267 42762687 -101519802 - L1ME4a LINE L1 -196 5925 5482 194 276 0 103 chr12 42762952 42763039 -101519450 + MIR SINE MIR 51 128 -134 219 379 29 19 chr12 42763359 42763462 -101519027 - L2 LINE L2 -32 3240 3137 1153 8 0 0 chr12 42765065 42765196 -101517293 - L1PA2 LINE L1 -3 6152 6022 2607 134 26 5 chr12 42765199 42765618 -101516871 - MSTA LTR MaLR 0 428 1 195 69 0 0 chr12 42765628 42765657 -101516832 + (TA)n Simple_repeat Simple_repeat 1 29 0 1257 20 0 0 chr12 42765657 42765803 -101516686 - L1PA5 LINE L1 -9 6145 6000 211 330 47 105 chr12 42765851 42766109 -101516380 + L2 LINE L2 2986 3228 -44 479 303 21 7 chr12 42766333 42766478 -101516011 - MER5A DNA MER1_type -5 184 38 387 0 0 0 chr12 42766578 42766621 -101515868 + (CA)n Simple_repeat Simple_repeat 1 43 0 2434 48 0 14 chr12 42766698 42767063 -101515426 - AluY SINE Alu 0 381 21 12946 132 48 43 chr12 42767749 42770151 -101512338 - Tigger1 DNA MER2_type -3 2415 1 215 340 65 20 chr12 42770936 42771089 -101511400 + L2 LINE L2 1547 1706 -1608 216 328 63 28 chr12 42771153 42771244 -101511245 + L2 LINE L2 1680 1766 -1548 1388 202 10 42 chr12 42771244 42771551 -101510938 - AluJo SINE Alu -15 297 1 216 328 63 28 chr12 42771551 42771776 -101510713 + L2 LINE L2 1766 2007 -1307 234 0 0 0 chr12 42771942 42771968 -101510521 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1011 186 41 23 chr12 42772321 42772542 -101509947 + MSTB1 LTR MaLR 1 225 -207 751 165 0 0 chr12 42772540 42772661 -101509828 - MSTB1 LTR MaLR -14 418 298 * 28 48 0 0 chr12 42772961 42773003 -101509486 + AT_rich Low_complexity Low_complexity 1 42 0 649 273 22 6 chr12 42774632 42774815 -101507674 - MER5A DNA MER1_type -3 186 1 429 260 16 47 chr12 42775350 42775477 -101507012 - MER5B DNA MER1_type -1 177 55 190 316 41 31 chr12 42775524 42775622 -101506867 - MIR SINE MIR -4 258 160 208 125 0 0 chr12 42775743 42775775 -101506714 + (TC)n Simple_repeat Simple_repeat 1 32 0 398 222 42 12 chr12 42775778 42775945 -101506544 + CT-rich Low_complexity Low_complexity 3 174 0 282 338 119 7 chr12 42776548 42776699 -101505790 - MIR SINE MIR -44 218 51 2041 94 3 45 chr12 42777697 42778005 -101504484 - AluSc SINE Alu 0 298 3 369 234 171 0 chr12 42778194 42778305 -101504184 - MIR SINE MIR -77 185 56 2174 89 3 51 chr12 42779364 42779679 -101502810 - AluSg SINE Alu -10 300 1 374 283 7 40 chr12 42780029 42780181 -101502308 + GA-rich Low_complexity Low_complexity 1 147 0 3052 28 0 6 chr12 42780186 42780549 -101501940 - L1PA3 LINE L1 -145 6010 5650 676 236 93 37 chr12 42780716 42780962 -101501527 + MER46C DNA MER2_type 72 331 -7 247 243 14 27 chr12 42781084 42781158 -101501331 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 434 262 87 7 chr12 42781486 42781635 -101500854 + MIR SINE MIR 73 233 -29 2158 97 7 13 chr12 42831848 42832156 -101450333 - AluSq SINE Alu -7 306 1 679 253 0 7 chr12 42832619 42832769 -101449720 + MER69 DNA AcHobo 1 149 -1077 358 214 29 29 chr12 42832785 42832888 -101449601 + MER69 DNA AcHobo 2424 2526 0 25 51 0 0 chr12 42832960 42832999 -101449490 + AT_rich Low_complexity Low_complexity 1 39 0 210 191 0 0 chr12 42833454 42833496 -101448993 + C-rich Low_complexity Low_complexity 4 45 0 1377 231 95 5 chr12 42833870 42834269 -101448220 + MER63B DNA MER1_type 2 436 0 23 0 0 0 chr12 42834744 42834767 -101447722 + AT_rich Low_complexity Low_complexity 1 23 0 27 62 0 0 chr12 42834914 42834962 -101447527 + AT_rich Low_complexity Low_complexity 1 48 0 25 31 0 0 chr12 42834993 42835025 -101447464 + AT_rich Low_complexity Low_complexity 1 32 0 527 284 135 44 chr12 42835778 42836007 -101446482 + MIR SINE MIR 2 251 -11 1561 75 0 80 chr12 42836120 42836254 -101446235 - THE1A LTR MaLR 0 355 246 2365 57 0 0 chr12 42836254 42836557 -101445932 - AluY SINE Alu 0 303 1 1561 75 0 80 chr12 42836557 42836660 -101445829 - THE1A LTR MaLR -109 246 136 456 301 51 6 chr12 42836670 42836846 -101445643 + L2 LINE L2 1784 1967 -1347 253 281 50 66 chr12 42836847 42836968 -101445521 - MLT1L LTR MaLR -244 371 253 22 35 0 0 chr12 42839236 42839265 -101443224 + AT_rich Low_complexity Low_complexity 1 29 0 319 298 8 23 chr12 42840844 42840975 -101441514 - L1M4 LINE L1 -951 5195 5067 22 0 0 0 chr12 42842196 42842218 -101440271 + AT_rich Low_complexity Low_complexity 1 22 0 534 291 51 10 chr12 42842464 42842660 -101439829 - MIR SINE MIR -6 256 53 252 357 44 32 chr12 42843381 42843630 -101438859 - L2 LINE L2 -182 3090 2839 21 0 0 0 chr12 42845000 42845021 -101437468 + AT_rich Low_complexity Low_complexity 1 21 0 404 346 74 0 chr12 42845096 42845258 -101437231 - MIR3 SINE MIR -3 205 32 274 317 50 37 chr12 42846129 42846290 -101436199 + L3 LINE CR1 1364 1526 -51 2329 97 0 0 chr12 42847868 42848167 -101434322 + AluSc SINE Alu 1 299 -10 664 215 20 27 chr12 42848189 42848338 -101434151 + MER106B DNA MER1_type 1 148 -911 39 22 0 0 chr12 42848347 42848393 -101434096 + AT_rich Low_complexity Low_complexity 1 46 0 273 381 111 14 chr12 42848874 42849163 -101433326 - L2 LINE L2 -989 2325 2009 236 318 0 0 chr12 42850715 42850803 -101431686 - L1MC4 LINE L1 -1340 6702 6615 540 111 0 0 chr12 42850978 42851059 -101431430 + (TA)n Simple_repeat Simple_repeat 1 81 0 1576 278 118 73 chr12 42851163 42851349 -101431140 - L2 LINE L2 0 3313 3137 468 0 0 0 chr12 42851349 42851401 -101431088 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 1576 278 118 73 chr12 42851401 42852290 -101430199 - L2 LINE L2 -176 3137 2178 326 292 40 0 chr12 42852634 42852758 -101429731 + MIR SINE MIR 51 143 -65 269 360 108 10 chr12 42854589 42854792 -101427697 + MIR SINE MIR 2 224 -38 193 370 62 39 chr12 42856047 42856352 -101426137 + L2 LINE L2 1358 1669 -1645 235 280 168 21 chr12 42856384 42856527 -101425962 + L2 LINE L2 1900 2063 -1251 389 287 132 12 chr12 42856888 42857055 -101425434 - MER5A DNA MER1_type -2 187 1 308 329 32 60 chr12 42857068 42857320 -101425169 + L2 LINE L2 2511 2755 -559 2234 148 19 6 chr12 42857320 42857679 -101424810 + THE1B LTR MaLR 1 364 0 425 255 0 51 chr12 42858156 42858313 -101424176 + CT-rich Low_complexity Low_complexity 4 152 0 1031 184 22 0 chr12 42859410 42859595 -101422894 - MER5A DNA MER1_type 0 189 1 1080 283 137 4 chr12 42859891 42860350 -101422139 + L2 LINE L2 1776 2295 -1019 328 248 53 35 chr12 42863065 42863178 -101419311 + MER5A DNA MER1_type 12 126 -63 180 322 0 0 chr12 42863153 42863212 -101419277 - MER5B DNA MER1_type -117 61 3 * 373 311 23 30 chr12 42863653 42863785 -101418704 + MIR SINE MIR 20 150 -112 1537 186 10 10 chr12 42863960 42864250 -101418239 - AluJb SINE Alu -20 292 3 198 91 61 0 chr12 42864922 42864955 -101417534 - MIR SINE MIR -154 108 74 277 308 111 65 chr12 42865395 42865674 -101416815 - L2 LINE L2 -358 2956 2665 23 33 0 0 chr12 42867085 42867115 -101415374 + AT_rich Low_complexity Low_complexity 1 30 0 977 313 35 18 chr12 42867394 42867848 -101414641 - LTR16B LTR ERVL 0 464 3 282 328 120 46 chr12 42868160 42868401 -101414088 + L3b LINE CR1 1228 1486 -97 204 309 0 0 chr12 42868524 42868579 -101413910 - L2 LINE L2 -673 2641 2587 21 36 0 0 chr12 42869551 42869579 -101412910 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 42871267 42871288 -101411201 + AT_rich Low_complexity Low_complexity 1 21 0 216 270 30 60 chr12 42871603 42871703 -101410786 - L2 LINE L2 0 3272 3176 1995 133 27 27 chr12 42872881 42873218 -101409271 - MER1B DNA MER1_type 0 337 1 305 292 89 3 chr12 42874150 42874269 -101408220 + MIR SINE MIR 25 164 -55 3739 151 10 5 chr12 42876709 42877325 -101405164 - LTR31 LTR ERV1 0 619 1 213 192 55 110 chr12 42877374 42877447 -101405042 - MIR SINE MIR -88 174 106 257 337 11 0 chr12 42878644 42878736 -101403753 - L2 LINE L2 0 3272 3180 306 365 0 61 chr12 42879173 42879288 -101403201 - L2 LINE L2 -31 3241 3134 190 358 63 39 chr12 42879794 42880001 -101402488 - L2 LINE L2 -189 3083 2872 387 363 23 6 chr12 42880083 42880254 -101402235 - L2 LINE L2 -556 2758 2585 1476 261 87 14 chr12 42880257 42880924 -101401565 - Charlie2 DNA MER1_type -1 2861 2146 358 171 360 9 chr12 42880931 42881042 -101401447 - Charlie2 DNA MER1_type -858 2004 1855 641 310 131 0 chr12 42881055 42881345 -101401144 - Charlie2 DNA MER1_type -2453 329 2 267 323 164 15 chr12 42881468 42881663 -101400826 - L2 LINE L2 -1959 1355 1132 407 254 92 7 chr12 42882074 42882216 -101400273 + Charlie2 DNA MER1_type 2709 2862 0 1561 194 104 72 chr12 42882996 42883466 -101399023 - MLT1E1 LTR MaLR -2 652 168 1619 60 82 9 chr12 42883471 42883703 -101398786 + L1P4 LINE L1 5374 5622 -546 3741 128 30 30 chr12 42883803 42884514 -101397975 + L1PA10 LINE L1 5455 6165 -3 316 233 8 124 chr12 42884522 42884651 -101397838 + L1MEd LINE L1 1048 1161 -4958 921 112 31 87 chr12 42884662 42884858 -101397631 + L1MC2 LINE L1 6136 6320 -24 517 176 115 54 chr12 42884948 42885096 -101397393 - MLT1E1 LTR MaLR -497 157 1 21 36 0 0 chr12 42885295 42885323 -101397166 + AT_rich Low_complexity Low_complexity 1 28 0 2602 224 97 22 chr12 42885727 42886407 -101396082 - MER21B LTR ERV1 -123 740 10 788 220 62 21 chr12 42887090 42887331 -101395158 - L1MEc LINE L1 -4320 2802 2552 904 172 71 92 chr12 42887331 42887569 -101394920 + AluJo SINE Alu 50 282 -30 252 0 0 0 chr12 42887574 42887602 -101394887 + (CA)n Simple_repeat Simple_repeat 2 29 0 308 259 37 0 chr12 42887605 42887686 -101394803 - L1MEc LINE L1 -4573 2549 2466 363 193 0 0 chr12 42887689 42887746 -101394743 - Charlie3 DNA MER1_type -2634 76 20 653 311 49 0 chr12 42887752 42888016 -101394473 - L1MEc LINE L1 -6128 295 19 24 0 0 0 chr12 42888299 42888323 -101394166 + AT_rich Low_complexity Low_complexity 1 24 0 1931 176 37 0 chr12 42888904 42889228 -101393261 + MER1B DNA MER1_type 2 337 0 322 171 13 13 chr12 42889276 42889352 -101393137 + CT-rich Low_complexity Low_complexity 3 78 0 2198 86 20 10 chr12 42889380 42889683 -101392806 - AluSq SINE Alu -5 308 3 6563 204 34 15 chr12 42889703 42892109 -101390380 - L1MB7 LINE L1 -9 6986 4531 487 240 27 66 chr12 42892105 42892288 -101390201 - L1MB7 LINE L1 -5438 1421 1246 * 629 197 0 8 chr12 42892297 42892419 -101390070 - MLT1J2 LTR MaLR -269 181 61 1278 154 85 0 chr12 42892742 42893001 -101389488 + L1MA8 LINE L1 6007 6287 -4 261 0 0 0 chr12 42893246 42893275 -101389214 + (TTA)n Simple_repeat Simple_repeat 2 30 0 23 68 0 0 chr12 42894410 42894454 -101388035 + AT_rich Low_complexity Low_complexity 1 44 0 1703 160 14 10 chr12 42894640 42894933 -101387556 - AluJo SINE Alu -16 296 3 2241 129 36 14 chr12 42895247 42895603 -101386886 + THE1B LTR MaLR 1 364 0 224 216 0 0 chr12 42896103 42896154 -101386335 + (CA)n Simple_repeat Simple_repeat 2 52 0 252 0 0 0 chr12 42896552 42896580 -101385909 + (A)n Simple_repeat Simple_repeat 1 28 0 443 304 69 17 chr12 42896707 42896986 -101385503 - L2 LINE L2 -565 2749 2402 444 19 0 0 chr12 42897574 42897627 -101384862 + (TG)n Simple_repeat Simple_repeat 2 54 0 496 310 26 18 chr12 42897914 42897926 -101384563 - MIR SINE MIR -31 231 221 2131 110 37 0 chr12 42897926 42898225 -101384264 - AluSg SINE Alu 0 310 1 496 310 26 18 chr12 42898225 42898438 -101384051 - MIR SINE MIR -41 221 4 222 240 0 20 chr12 42899525 42899575 -101382914 - L2 LINE L2 -18 3295 3247 * 756 263 42 24 chr12 42899568 42899781 -101382708 + MIR SINE MIR 46 262 0 286 263 0 20 chr12 42900170 42900269 -101382220 - L1MC/D LINE L1 -2012 5796 5700 385 268 202 9 chr12 42900288 42900501 -101381988 - MIR SINE MIR 0 262 9 449 285 23 31 chr12 42900537 42900667 -101381822 + MER5B DNA MER1_type 4 132 -46 1494 162 74 0 chr12 42900672 42900968 -101381521 - L1MD1 LINE L1 -1 6241 5924 239 127 18 91 chr12 42900985 42901040 -101381449 + L1MD1 LINE L1 5882 5932 -427 1443 171 14 17 chr12 42901094 42901138 -101381351 - L1MD1 LINE L1 -336 5906 5863 422 314 25 36 chr12 42901138 42901418 -101381071 - L1PB1 LINE L1 -288 5863 5587 2332 91 7 0 chr12 42903471 42903778 -101378711 - AluSp SINE Alu -4 309 1 24 32 0 0 chr12 42904466 42904497 -101377992 + AT_rich Low_complexity Low_complexity 1 31 0 30 27 0 0 chr12 42904656 42904693 -101377796 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr12 42905591 42905621 -101376868 + AT_rich Low_complexity Low_complexity 1 30 0 522 319 135 30 chr12 42906104 42906474 -101376015 - MLT1K LTR MaLR 0 588 180 392 299 0 0 chr12 42906939 42907046 -101375443 - MER119 DNA MER1_type 0 583 477 326 293 102 48 chr12 42908540 42908687 -101373802 + MER5B DNA MER1_type 18 172 -6 301 237 137 22 chr12 42909416 42909555 -101372934 - L1ME4a LINE L1 -13 6108 5954 342 290 45 40 chr12 42909573 42909749 -101372740 - L1MEc LINE L1 -4076 2320 2144 427 361 14 9 chr12 42909905 42910121 -101372368 - L1MC/D LINE L1 -444 5677 5461 301 323 43 30 chr12 42910387 42910551 -101371938 - L1MC/D LINE L1 -1077 5069 4904 577 256 108 44 chr12 42910617 42910820 -101371669 + MIR SINE MIR 46 261 -1 776 245 94 25 chr12 42910916 42911161 -101371328 + MIR SINE MIR 1 262 0 380 346 101 29 chr12 42911166 42911710 -101370779 - L1MC/D LINE L1 -1454 4692 4110 7253 32 0 3 chr12 42911923 42912787 -101369702 - L1PA4 LINE L1 -869 5277 4415 7283 33 0 0 chr12 42912787 42913656 -101368833 + L1PA4 LINE L1 5286 6154 -1 7253 32 0 3 chr12 42913656 42913670 -101368819 - L1P LINE L1 -1731 4415 4402 206 339 0 0 chr12 42914987 42915046 -101367443 - L2 LINE L2 -8 3264 3206 317 295 193 6 chr12 42915292 42915458 -101367031 + MIR SINE MIR 63 259 -3 5548 185 31 42 chr12 42915662 42917488 -101365001 - L1MC1 LINE L1 0 6333 4531 23 0 0 0 chr12 42917950 42917973 -101364516 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr12 42918475 42918512 -101363977 + AT_rich Low_complexity Low_complexity 1 37 0 654 283 54 39 chr12 42919252 42919531 -101362958 + L2 LINE L2 2202 2484 -830 1127 190 50 0 chr12 42919808 42920029 -101362460 + L1MC2 LINE L1 6088 6319 -25 1831 162 117 43 chr12 42920800 42921195 -101361294 - MSTC LTR MaLR -4 424 1 2513 32 0 29 chr12 42921235 42921545 -101360944 - AluY SINE Alu -10 301 1 345 208 94 10 chr12 42922395 42922491 -101359998 + MIR SINE MIR 124 227 -35 314 273 15 0 chr12 42922553 42922619 -101359870 + L2 LINE L2 3245 3311 -2 185 222 0 0 chr12 42922905 42922941 -101359548 + L2 LINE L2 3231 3266 -6 186 375 54 27 chr12 42923593 42923705 -101358784 - L2 LINE L2 -8 3264 3150 27 0 0 0 chr12 42923801 42923828 -101358661 + AT_rich Low_complexity Low_complexity 1 27 0 258 359 157 6 chr12 42925166 42925325 -101357164 - MER5A DNA MER1_type -6 183 1 215 314 71 0 chr12 42926612 42926682 -101355807 - MIR SINE MIR -138 124 50 394 354 66 22 chr12 42926816 42926997 -101355492 + MER5A DNA MER1_type 1 189 0 21 0 0 0 chr12 42927963 42927984 -101354505 + AT_rich Low_complexity Low_complexity 1 21 0 211 258 45 0 chr12 42928402 42928468 -101354021 + GA-rich Low_complexity Low_complexity 5 73 0 413 155 26 35 chr12 42929477 42929488 -101353001 + CT-rich Low_complexity Low_complexity 2 12 -104 2389 75 3 0 chr12 42929488 42929796 -101352693 - AluY SINE Alu -2 309 1 413 155 26 35 chr12 42929796 42929900 -101352589 + CT-rich Low_complexity Low_complexity 12 116 0 2065 137 13 3 chr12 42929900 42930207 -101352282 - AluSx SINE Alu 0 312 3 334 271 161 0 chr12 42930282 42930400 -101352089 - L2 LINE L2 -2 3311 3175 389 336 60 7 chr12 42930422 42930571 -101351918 - MIR SINE MIR -51 211 55 237 200 0 0 chr12 42931033 42931068 -101351421 - Alu SINE Alu -25 277 243 207 88 0 0 chr12 42931095 42931129 -101351360 + (TAAAAA)n Simple_repeat Simple_repeat 5 38 0 2403 48 14 0 chr12 42931473 42931764 -101350725 + AluY SINE Alu 1 295 -16 28 0 0 0 chr12 42931827 42931855 -101350634 + AT_rich Low_complexity Low_complexity 1 28 0 423 0 0 0 chr12 42932869 42932916 -101349573 + (CA)n Simple_repeat Simple_repeat 2 48 0 253 310 37 53 chr12 42933035 42933222 -101349267 + MIR SINE MIR 47 230 -32 270 81 0 0 chr12 42933331 42933368 -101349121 + (T)n Simple_repeat Simple_repeat 1 37 0 634 292 23 50 chr12 42933489 42933749 -101348740 - MIR SINE MIR 0 262 10 217 164 36 18 chr12 42934281 42934336 -101348153 + T-rich Low_complexity Low_complexity 3 58 0 1729 18 23 9 chr12 42934366 42934584 -101347905 - L1PA2 LINE L1 -2 6153 5933 2276 93 13 3 chr12 42934652 42934962 -101347527 - AluSq SINE Alu 0 313 1 523 224 109 14 chr12 42935141 42935184 -101347305 + MER20 DNA MER1_type 55 93 -126 414 0 0 0 chr12 42935184 42935230 -101347259 + (TG)n Simple_repeat Simple_repeat 2 47 0 523 224 109 14 chr12 42935230 42935333 -101347156 + MER20 DNA MER1_type 93 215 -4 27 0 0 0 chr12 42936044 42936071 -101346418 + AT_rich Low_complexity Low_complexity 1 27 0 1308 115 0 16 chr12 42936637 42936828 -101345661 + AluSg/x SINE Alu 125 312 0 298 288 104 24 chr12 42937239 42937364 -101345125 + MIR SINE MIR 23 157 -105 191 343 0 0 chr12 42937461 42937528 -101344961 + MIR SINE MIR 183 249 -13 263 288 0 0 chr12 42937605 42937678 -101344811 + (TAG)n Simple_repeat Simple_repeat 1 73 0 425 301 38 0 chr12 42937681 42937814 -101344675 + MIR SINE MIR 123 260 -2 30 0 0 0 chr12 42938792 42938822 -101343667 + AT_rich Low_complexity Low_complexity 1 30 0 33 25 0 0 chr12 42939426 42939466 -101343023 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr12 42939573 42939604 -101342885 + AT_rich Low_complexity Low_complexity 1 31 0 1181 274 74 21 chr12 42939720 42940150 -101342339 - MER77 LTR ERV1 -7 598 146 272 428 125 19 chr12 42940700 42941020 -101341469 - L2 LINE L2 0 3272 2919 205 299 30 0 chr12 42941265 42941332 -101341157 - L2 LINE L2 -5 3308 3240 213 363 115 34 chr12 42941650 42942127 -101340362 - L2 LINE L2 -356 2958 2443 201 83 28 28 chr12 42942352 42942388 -101340101 + (GAGAA)n Simple_repeat Simple_repeat 4 39 0 306 0 0 0 chr12 42942682 42942716 -101339773 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 289 255 21 113 chr12 42943235 42943376 -101339113 + MIR SINE MIR 64 191 -71 645 139 0 0 chr12 42943378 42943486 -101339003 + (TG)n Simple_repeat Simple_repeat 2 109 0 182 320 0 0 chr12 42943498 42943548 -101338941 + MIR SINE MIR 213 262 0 257 374 44 0 chr12 42943608 42943699 -101338790 - L2 LINE L2 -36 3277 3183 231 275 66 11 chr12 42943968 42944059 -101338430 - MIR3 SINE MIR -1 207 112 183 296 56 28 chr12 42945130 42945201 -101337288 + L2 LINE L2 2987 3059 -213 21 0 0 0 chr12 42946513 42946534 -101335955 + AT_rich Low_complexity Low_complexity 1 21 0 248 255 0 0 chr12 42946620 42946671 -101335818 + Charlie4 DNA MER1_type 1 51 -1910 21 36 0 0 chr12 42947160 42947188 -101335301 + AT_rich Low_complexity Low_complexity 1 28 0 189 107 0 0 chr12 42947337 42947365 -101335124 + (TG)n Simple_repeat Simple_repeat 1 28 0 769 144 93 7 chr12 42948229 42948368 -101334121 + AluSp SINE Alu 1 151 -162 46 45 0 0 chr12 42948627 42948694 -101333795 + AT_rich Low_complexity Low_complexity 1 67 0 318 26 0 0 chr12 42949611 42949650 -101332839 + (TG)n Simple_repeat Simple_repeat 1 39 0 395 38 19 0 chr12 42951083 42951136 -101331353 + (CA)n Simple_repeat Simple_repeat 1 54 0 746 120 0 0 chr12 42952148 42952256 -101330233 + AluSg/x SINE Alu 176 283 -29 210 37 0 0 chr12 42952261 42952288 -101330201 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2107 121 10 0 chr12 42952289 42952595 -101329894 + AluSg SINE Alu 1 309 -1 273 216 14 68 chr12 42952937 42953085 -101329404 + (TATAA)n Simple_repeat Simple_repeat 5 144 0 492 259 23 15 chr12 42953131 42953262 -101329227 - MIR SINE MIR -98 164 33 226 331 58 29 chr12 42955822 42955961 -101326528 + MIR SINE MIR 14 156 -106 22 0 0 0 chr12 42956760 42956782 -101325707 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr12 42957646 42957681 -101324808 + AT_rich Low_complexity Low_complexity 1 35 0 965 56 0 16 chr12 42957959 42958084 -101324405 - L1PA3 LINE L1 -3 6152 6030 529 192 117 0 chr12 42959420 42959540 -101322949 + AluJb SINE Alu 1 134 -178 21 0 0 0 chr12 42959540 42959561 -101322928 + AT_rich Low_complexity Low_complexity 1 21 0 686 277 23 6 chr12 42959717 42959894 -101322595 + MIR SINE MIR 7 186 -76 224 287 89 69 chr12 42960163 42960264 -101322225 + MIR SINE MIR 41 143 -65 405 0 0 0 chr12 42960267 42960312 -101322177 + (TA)n Simple_repeat Simple_repeat 1 45 0 195 129 0 0 chr12 42961624 42961655 -101320834 + (A)n Simple_repeat Simple_repeat 1 31 0 3529 123 55 17 chr12 42962028 42962615 -101319874 - MER4B LTR ERV1 0 610 2 382 311 58 58 chr12 42962766 42962853 -101319636 - MIR SINE MIR -2 260 174 513 0 0 0 chr12 42962853 42962910 -101319579 + (TTTTG)n Simple_repeat Simple_repeat 1 57 0 1843 141 7 4 chr12 42962914 42963190 -101319299 - AluSx SINE Alu -35 277 1 382 311 58 58 chr12 42963190 42963338 -101319151 - MIR SINE MIR -90 172 20 195 265 0 0 chr12 42963624 42963673 -101318816 - L2 LINE L2 0 3313 3265 33 0 0 0 chr12 42964607 42964640 -101317849 + AT_rich Low_complexity Low_complexity 1 33 0 1662 140 7 58 chr12 42965245 42965553 -101316936 + AluJb SINE Alu 7 298 -14 22 35 0 0 chr12 42967014 42967043 -101315446 + AT_rich Low_complexity Low_complexity 1 29 0 416 246 100 18 chr12 42967613 42967723 -101314766 + L2 LINE L2 3187 3305 -8 * 688 233 86 45 chr12 42967697 42967942 -101314547 - L2 LINE L2 -2 3311 3057 1915 53 4 0 chr12 42967948 42968191 -101314298 + L1PA5 LINE L1 5910 6153 -1 756 252 46 8 chr12 42968208 42968548 -101313941 - L1MEc LINE L1 -3798 2417 2107 351 96 0 0 chr12 42968557 42968609 -101313880 + (TG)n Simple_repeat Simple_repeat 2 53 0 302 321 65 33 chr12 42968672 42968856 -101313633 - L1MEc LINE L1 -4321 2075 1886 306 179 0 24 chr12 42968899 42969022 -101313467 + (TTATA)n Simple_repeat Simple_repeat 5 124 0 34 42 0 0 chr12 42969062 42969110 -101313379 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr12 42969195 42969219 -101313270 + AT_rich Low_complexity Low_complexity 1 24 0 2219 191 47 0 chr12 42969394 42969803 -101312686 - MSTB1 LTR MaLR 0 432 5 209 222 16 0 chr12 42969913 42969976 -101312513 + (TA)n Simple_repeat Simple_repeat 1 64 0 500 263 56 56 chr12 42970040 42970306 -101312183 - L1MEc LINE L1 -4576 1820 1555 846 285 107 53 chr12 42970372 42970937 -101311552 - L1MCc LINE L1 -4577 2545 2012 228 35 0 0 chr12 42970937 42970966 -101311523 + (TG)n Simple_repeat Simple_repeat 1 29 0 846 285 107 53 chr12 42970966 42971666 -101310823 - L1MCc LINE L1 -5110 2012 974 618 316 7 29 chr12 42971829 42972101 -101310388 - L1MCc LINE L1 -5959 464 199 318 205 98 27 chr12 42972107 42972219 -101310270 - L1MCc LINE L1 -6285 138 19 493 323 59 5 chr12 42972765 42972985 -101309504 - L1ME LINE L1 -414 5707 5476 859 210 113 107 chr12 42976113 42976571 -101305918 - MLT1C LTR MaLR -1 466 6 2152 85 4 0 chr12 42976636 42976944 -101305545 + AluY SINE Alu 1 309 0 255 277 84 24 chr12 42977901 42977984 -101304505 + MER5A DNA MER1_type 10 97 -92 270 103 0 0 chr12 42978987 42979026 -101303463 - tRNA-Gln-CAG tRNA tRNA -36 39 1 21 36 0 0 chr12 42979114 42979142 -101303347 + AT_rich Low_complexity Low_complexity 1 28 0 328 335 97 7 chr12 42980010 42980165 -101302324 + MIR SINE MIR 38 206 -56 317 281 329 12 chr12 42980949 42981113 -101301376 - MIR SINE MIR -34 228 13 379 268 103 62 chr12 42981138 42981230 -101301259 + MIR SINE MIR 29 116 -146 1559 152 28 10 chr12 42981230 42981520 -101300969 - AluJb SINE Alu -17 295 1 379 268 103 62 chr12 42981520 42981651 -101300838 + MIR SINE MIR 116 261 -1 248 346 7 44 chr12 42982682 42982818 -101299671 + MIR SINE MIR 20 150 -112 231 288 25 25 chr12 42983012 42983092 -101299397 + L2 LINE L2 3225 3304 -9 24 0 0 0 chr12 42983701 42983725 -101298764 + AT_rich Low_complexity Low_complexity 1 24 0 2297 88 3 13 chr12 42984786 42985093 -101297396 - AluY SINE Alu -7 304 1 20272 174 24 15 chr12 42985716 42987639 -101294850 - L1PA13 LINE L1 -1 6813 4909 2276 101 0 0 chr12 42987639 42987945 -101294544 - AluY SINE Alu -5 306 1 20272 174 24 15 chr12 42987945 42991395 -101291094 - L1PA13 LINE L1 -1905 4909 1396 686 272 16 26 chr12 42991398 42991589 -101290900 - L1PA13 LINE L1 -5529 1258 1070 2804 6 0 3 chr12 42992136 42992448 -101290041 - AluYa5 SINE Alu 0 311 1 3928 135 15 7 chr12 42992498 42993104 -101289385 - LTR9 LTR ERV1 0 612 2 1466 134 0 5 chr12 42993105 42993321 -101289168 - HUERS-P3 LTR ERV1 -1 8918 8704 575 198 8 0 chr12 42993649 42993775 -101288714 - LTR9-int LTR ERV1 -2443 2572 2446 894 162 22 11 chr12 42993781 42993960 -101288529 - LTR9-int LTR ERV1 -3693 4123 3943 * 5080 135 4 4 chr12 42993933 42994665 -101287824 - LTR9-int LTR ERV1 -3801 5118 4387 * 9935 143 19 15 chr12 42994651 42996276 -101286213 - LTR9-int LTR ERV1 -5219 3700 2069 584 78 0 0 chr12 42996299 42996376 -101286113 - LTR9-int LTR ERV1 -7012 1907 1831 9378 128 67 15 chr12 42996390 42997947 -101284542 - LTR9-int LTR ERV1 -7267 1652 15 4435 102 2 10 chr12 42997962 42998577 -101283912 - LTR9 LTR ERV1 0 612 3 185 397 34 20 chr12 43000429 43000575 -101281914 + MER5A DNA MER1_type 39 186 -3 695 293 104 40 chr12 43001203 43001579 -101280910 - L2 LINE L2 -24 3289 2890 405 102 430 2 chr12 43002361 43002489 -101280000 + AluSg/x SINE Alu 133 299 -1 21 0 0 0 chr12 43002500 43002521 -101279968 + AT_rich Low_complexity Low_complexity 1 21 0 2073 106 7 0 chr12 43002898 43003191 -101279298 + AluSp SINE Alu 1 295 -18 216 185 0 0 chr12 43003681 43003735 -101278754 + (TA)n Simple_repeat Simple_repeat 1 54 0 237 65 0 0 chr12 43003785 43003816 -101278673 + (TG)n Simple_repeat Simple_repeat 2 32 0 2314 94 3 0 chr12 43003963 43004260 -101278229 + AluSp SINE Alu 1 298 -15 22 0 0 0 chr12 43005016 43005038 -101277451 + AT_rich Low_complexity Low_complexity 1 22 0 253 288 0 0 chr12 43005147 43005220 -101277269 + (TATATG)n Simple_repeat Simple_repeat 4 76 0 355 294 34 17 chr12 43006246 43006365 -101276124 - MIR SINE MIR -123 139 19 324 211 165 37 chr12 43006486 43006595 -101275894 + L2 LINE L2 3183 3305 -8 291 285 146 46 chr12 43007494 43007624 -101274865 + MIR SINE MIR 49 191 -71 279 177 0 0 chr12 43007669 43007731 -101274758 + (ATG)n Simple_repeat Simple_repeat 3 64 0 433 239 131 0 chr12 43007741 43007871 -101274618 - MIR SINE MIR -10 252 106 304 230 47 54 chr12 43008961 43009109 -101273380 - LTR16C LTR ERVL -58 433 287 32 0 0 0 chr12 43009963 43009995 -101272494 + AT_rich Low_complexity Low_complexity 1 32 0 378 309 79 0 chr12 43011128 43011254 -101271235 + MIR SINE MIR 12 147 -115 1752 317 84 54 chr12 43011285 43012735 -101269754 - L2 LINE L2 0 3313 1820 441 254 0 27 chr12 43012724 43012834 -101269655 + MIR SINE MIR 142 248 -14 * 2040 148 0 0 chr12 43013122 43013420 -101269069 - AluSx SINE Alu -14 298 1 463 225 0 8 chr12 43014589 43014709 -101267780 + L1MA9 LINE L1 6184 6302 -10 629 47 12 0 chr12 43015180 43015265 -101267224 + L1PA13 LINE L1 6070 6155 -8 256 289 41 25 chr12 43015519 43015640 -101266849 - L1ME4a LINE L1 -48 6073 5951 23 0 0 0 chr12 43015666 43015689 -101266800 + AT_rich Low_complexity Low_complexity 1 23 0 228 255 112 20 chr12 43015836 43015934 -101266555 - L1P5 LINE L1 -595 5559 5453 1471 246 47 2 chr12 43016283 43016689 -101265800 + MER63B DNA MER1_type 11 434 -2 210 273 0 0 chr12 43017125 43017180 -101265309 - L2 LINE L2 0 3313 3259 376 293 64 14 chr12 43017213 43017353 -101265136 + L2 LINE L2 2593 2739 -575 952 57 8 0 chr12 43017362 43017486 -101265003 + AluY SINE Alu 187 311 0 785 312 47 45 chr12 43017500 43018021 -101264468 + L2 LINE L2 2763 3309 -4 208 353 66 45 chr12 43018627 43018845 -101263644 - L2 LINE L2 -501 2813 2586 2275 76 0 38 chr12 43018845 43019159 -101263330 + AluY SINE Alu 1 302 -9 208 353 66 45 chr12 43019159 43019229 -101263260 - L2 LINE L2 -728 2586 2519 612 301 155 43 chr12 43020508 43021119 -101261370 - L2 LINE L2 0 3313 2641 507 272 40 12 chr12 43021785 43021958 -101260531 - L1ME LINE L1 -383 5738 5561 1403 178 103 25 chr12 43022363 43022683 -101259806 + MER7A DNA MER2_type 3 345 -1 351 0 0 0 chr12 43022752 43022791 -101259698 + (CA)n Simple_repeat Simple_repeat 2 40 0 1851 156 7 0 chr12 43022964 43023273 -101259216 + AluSx SINE Alu 1 311 0 22 56 0 0 chr12 43023274 43023310 -101259179 + AT_rich Low_complexity Low_complexity 1 36 0 1429 127 165 38 chr12 43023379 43023725 -101258764 - MLT1B LTR MaLR 0 390 1 191 328 16 0 chr12 43023725 43023786 -101258703 - L2 LINE L2 -1407 1907 1846 1009 274 106 77 chr12 43023798 43024687 -101257802 - L2 LINE L2 -101 3212 2305 368 259 154 62 chr12 43025193 43025452 -101257037 - MLT1L LTR MaLR -295 320 38 17325 32 0 1 chr12 43025579 43027684 -101254805 - L1PA3 LINE L1 -1570 4576 2473 7598 26 2 0 chr12 43027684 43029248 -101253241 + L1PA3 LINE L1 4587 6152 -3 26 0 0 0 chr12 43029248 43029274 -101253215 + AT_rich Low_complexity Low_complexity 1 26 0 546 295 14 0 chr12 43031173 43031312 -101251177 + L2 LINE L2 669 809 -2505 1034 205 167 29 chr12 43031340 43031760 -101250729 + Charlie4a DNA MER1_type 31 508 0 663 306 40 82 chr12 43031760 43032139 -101250350 + L2 LINE L2 805 1167 -2147 5171 266 114 77 chr12 43032189 43034815 -101247674 + L2 LINE L2 37 2760 -554 2129 119 0 7 chr12 43034992 43035286 -101247203 - AluSx SINE Alu -18 294 3 29 47 0 0 chr12 43035296 43035339 -101247150 + AT_rich Low_complexity Low_complexity 1 43 0 2184 114 146 13 chr12 43035341 43035719 -101246770 - MSTA LTR MaLR 0 428 1 994 216 30 13 chr12 43035891 43036123 -101246366 - MER106A DNA MER1_type 0 236 1 2392 72 0 13 chr12 43036234 43036539 -101245950 - AluY SINE Alu -10 301 1 33 56 0 0 chr12 43036801 43036855 -101245634 + AT_rich Low_complexity Low_complexity 1 54 0 453 19 0 0 chr12 43036975 43037029 -101245460 + (CA)n Simple_repeat Simple_repeat 1 54 0 360 0 0 0 chr12 43038517 43038557 -101243932 + (TA)n Simple_repeat Simple_repeat 2 41 0 558 273 35 17 chr12 43041334 43041506 -101240983 - MIR SINE MIR -82 180 6 386 183 15 23 chr12 43041947 43042078 -101240411 + (TA)n Simple_repeat Simple_repeat 1 130 0 57 39 0 0 chr12 43042078 43042156 -101240333 + AT_rich Low_complexity Low_complexity 1 78 0 254 152 5 98 chr12 43042156 43042340 -101240149 + (TTTA)n Simple_repeat Simple_repeat 4 170 0 22 0 0 0 chr12 43042852 43042874 -101239615 + AT_rich Low_complexity Low_complexity 1 22 0 1331 242 14 3 chr12 43044831 43045120 -101237369 + AluJb SINE Alu 1 292 -20 361 286 68 20 chr12 43046050 43046197 -101236292 - MIR SINE MIR -89 173 20 293 313 100 27 chr12 43046781 43046931 -101235558 - MIR3 SINE MIR -6 202 42 2421 51 7 0 chr12 43048983 43049279 -101233210 + AluY SINE Alu 1 298 -13 297 0 0 0 chr12 43049858 43049891 -101232598 + (TAGA)n Simple_repeat Simple_repeat 1 33 0 268 228 51 193 chr12 43049892 43050089 -101232400 - MIR SINE MIR -93 169 1 2451 59 0 0 chr12 43050138 43050443 -101232046 - AluY SINE Alu -6 305 1 317 264 72 36 chr12 43050499 43050714 -101231775 - LTR65 LTR ERV1 -14 654 342 334 242 81 0 chr12 43050848 43050947 -101231542 - LTR65 LTR ERV1 -532 137 31 21 36 0 0 chr12 43051271 43051299 -101231190 + AT_rich Low_complexity Low_complexity 1 28 0 2389 4 4 0 chr12 43052594 43052866 -101229623 + L1PA2 LINE L1 5881 6153 -2 390 290 74 25 chr12 43053191 43053353 -101229136 + MIR SINE MIR 9 178 -84 924 174 0 13 chr12 43053932 43054087 -101228402 + FRAM SINE Alu 1 152 -24 22 0 0 0 chr12 43054087 43054109 -101228380 + AT_rich Low_complexity Low_complexity 1 22 0 1376 30 0 0 chr12 43054527 43054692 -101227797 - L1PA4 LINE L1 -3 6152 5988 225 65 0 0 chr12 43056162 43056193 -101226296 + (TAA)n Simple_repeat Simple_repeat 1 31 0 331 288 18 45 chr12 43058172 43058283 -101224206 + MER5B DNA MER1_type 2 109 -69 1642 212 58 10 chr12 43059032 43059428 -101223061 - MLT1C LTR MaLR 0 467 53 863 213 169 15 chr12 43059564 43059837 -101222652 + L1ME1 LINE L1 5835 6149 -17 380 302 48 0 chr12 43059867 43059993 -101222496 + MIR SINE MIR 20 151 -111 411 268 199 54 chr12 43060005 43060266 -101222223 - MLT1K LTR MaLR -8 580 282 2018 136 3 16 chr12 43060414 43060730 -101221759 + AluSx SINE Alu 1 312 0 704 61 0 10 chr12 43060746 43060845 -101221644 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 620 301 151 23 chr12 43061182 43061620 -101220869 - MLT1H LTR MaLR -33 516 23 999 239 158 10 chr12 43061649 43062055 -101220434 - HsTC2 DNA Tc2 -17 1881 1240 2123 224 89 29 chr12 43062071 43062590 -101219899 + MLT1F1 LTR MaLR 13 562 -5 835 270 108 3 chr12 43062692 43062988 -101219501 - HsTC2 DNA Tc2 -1571 327 1 199 123 53 0 chr12 43063714 43063771 -101218718 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 24 0 0 0 chr12 43063896 43063920 -101218569 + AT_rich Low_complexity Low_complexity 1 24 0 279 207 165 33 chr12 43064347 43064468 -101218021 - L1ME LINE L1 -690 5472 5336 2478 129 3 3 chr12 43064515 43064879 -101217610 + THE1B LTR MaLR 1 364 0 10199 122 16 26 chr12 43064880 43066476 -101216013 + THE1B-int LTR MaLR 2 1580 0 229 121 0 0 chr12 43066476 43066509 -101215980 + THE1B LTR MaLR 1 33 -331 414 0 0 0 chr12 43066511 43066557 -101215932 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 41994 39 24 2 chr12 43066557 43072560 -101209929 - L1PA3 LINE L1 -10 6145 15 2165 153 11 3 chr12 43072560 43072912 -101209577 + THE1B LTR MaLR 10 364 0 1446 240 78 57 chr12 43072912 43073079 -101209410 + L1ME3A LINE L1 5610 5772 -398 2159 159 127 38 chr12 43073079 43073552 -101208937 - MLT2B2 LTR ERVL 0 515 1 1446 240 78 57 chr12 43073552 43073710 -101208779 + L1ME3A LINE L1 5772 5925 -245 558 108 11 0 chr12 43073710 43073803 -101208686 + L1MA4 LINE L1 6201 6294 -6 1446 240 78 57 chr12 43073803 43074025 -101208464 + L1ME3A LINE L1 5925 6170 0 218 360 40 45 chr12 43074262 43074484 -101208005 - L2 LINE L2 -207 3065 2845 35 0 0 0 chr12 43074519 43074554 -101207935 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr12 43075109 43075143 -101207346 + AT_rich Low_complexity Low_complexity 1 34 0 920 176 6 6 chr12 43077003 43077162 -101205327 - FRAM SINE Alu -17 159 1 225 204 0 0 chr12 43077180 43077224 -101205265 + T-rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr12 43077864 43077887 -101204602 + AT_rich Low_complexity Low_complexity 1 23 0 6654 30 0 2 chr12 43077887 43078673 -101203816 - L1PA3 LINE L1 -3 6152 5369 1315 262 97 24 chr12 43079007 43079472 -101203017 - MLT1D LTR MaLR 0 505 7 257 253 110 14 chr12 43081706 43081852 -101200637 + L1MC4 LINE L1 6518 6677 -1365 1330 226 110 30 chr12 43081900 43082337 -101200152 + L1MC4 LINE L1 6657 7128 -914 723 210 217 29 chr12 43082350 43082622 -101199867 - L1M4 LINE L1 -2245 3901 3579 4897 111 14 25 chr12 43082728 43082763 -101199726 + L1PA11 LINE L1 5411 5445 -729 2294 103 0 0 chr12 43082763 43083065 -101199424 + AluSg SINE Alu 4 305 -5 4897 111 14 25 chr12 43083065 43083796 -101198693 + L1PA11 LINE L1 5445 6169 -5 22 56 0 0 chr12 43083800 43083836 -101198653 + AT_rich Low_complexity Low_complexity 1 36 0 357 240 110 14 chr12 43083839 43083985 -101198504 - L1M4 LINE L1 -3141 3005 2846 410 100 17 0 chr12 43083987 43084047 -101198442 - L1PA10 LINE L1 -223 5945 5885 268 150 0 0 chr12 43084061 43084101 -101198388 - tRNA-Thr-ACT tRNA tRNA -37 40 1 1568 231 62 45 chr12 43084119 43084449 -101198040 - L1M4 LINE L1 -3323 2823 2477 405 0 0 0 chr12 43084449 43084494 -101197995 + (TG)n Simple_repeat Simple_repeat 2 46 0 1568 231 62 45 chr12 43084494 43084760 -101197729 - L1M4 LINE L1 -3669 2477 2217 306 313 8 39 chr12 43085205 43085333 -101197156 - MLT1J LTR MaLR -45 466 343 230 242 48 32 chr12 43085487 43085549 -101196940 - MLT1J LTR MaLR -387 124 62 180 0 0 0 chr12 43085624 43085644 -101196845 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 439 284 54 29 chr12 43085680 43085884 -101196605 + MER102a DNA MER1_type 107 315 -15 1309 168 148 16 chr12 43086152 43086456 -101196033 - MER2 DNA MER2_type 0 344 1 282 233 35 23 chr12 43086484 43086570 -101195919 + MIR SINE MIR 155 241 -21 745 295 48 46 chr12 43086647 43087020 -101195469 + HsTC2 DNA Tc2 3 376 -1522 691 198 143 56 chr12 43087016 43087408 -101195081 + HsTC2 DNA Tc2 1278 1891 -7 * 216 0 0 0 chr12 43087714 43087738 -101194751 + (A)n Simple_repeat Simple_repeat 1 24 0 882 145 0 0 chr12 43089584 43089715 -101192774 - AluSg/x SINE Alu -12 298 168 687 204 99 0 chr12 43089997 43090169 -101192320 + MER3 DNA MER1_type 1 189 -20 593 262 81 44 chr12 43090663 43091144 -101191345 - HAL1b LINE L1 -28 1320 822 294 169 0 0 chr12 43091168 43091233 -101191256 + T-rich Low_complexity Low_complexity 1 65 0 1343 270 128 54 chr12 43091276 43091968 -101190521 + L2 LINE L2 2310 3078 -235 4141 125 14 33 chr12 43091968 43092705 -101189784 - L1MA4A LINE L1 -7 6296 5574 1343 270 128 54 chr12 43092705 43092948 -101189541 + L2 LINE L2 3078 3301 -12 1970 214 112 45 chr12 43093094 43093673 -101188816 - MLT1E3 LTR MaLR -6 618 1 438 313 117 13 chr12 43093921 43094151 -101188338 - HAL1b LINE L1 -738 610 357 1353 273 66 22 chr12 43094966 43095544 -101186945 - L1ME3A LINE L1 -183 5987 5385 257 257 9 57 chr12 43095847 43095952 -101186537 + LTR33A LTR ERVL 416 515 -8 326 248 76 0 chr12 43095962 43096067 -101186422 - L1ME3A LINE L1 -770 5392 5280 1285 216 114 23 chr12 43096067 43096418 -101186071 - MLT1B LTR MaLR 0 390 8 688 267 122 39 chr12 43096421 43097035 -101185454 - L1ME3A LINE L1 -858 5288 4624 34 42 0 0 chr12 43097170 43097218 -101185271 + AT_rich Low_complexity Low_complexity 1 48 0 248 343 10 30 chr12 43097385 43097484 -101185005 + L2 LINE L2 2992 3088 -184 712 305 104 59 chr12 43097821 43098313 -101184176 + REP3 LTR ERV 2 515 -47 640 279 28 126 chr12 43098671 43099069 -101183420 + L2 LINE L2 2909 3267 -5 622 213 8 8 chr12 43099451 43099578 -101182911 + FLAM_C SINE Alu 2 128 -5 372 22 0 0 chr12 43100719 43100764 -101181725 + (CA)n Simple_repeat Simple_repeat 2 46 0 1928 177 5 45 chr12 43101455 43101833 -101180656 + MLT1A1 LTR MaLR 3 365 0 200 206 15 29 chr12 43102029 43102097 -101180392 + T-rich Low_complexity Low_complexity 4 70 0 5207 25 2 0 chr12 43102282 43103206 -101179283 - L1PA3 LINE L1 -466 5689 4765 4184 32 0 0 chr12 43103206 43103697 -101178792 + L1PA3 LINE L1 5658 6152 -3 1635 147 29 0 chr12 43103741 43104014 -101178475 + L1PA16 LINE L1 5877 6157 -9 21 0 0 0 chr12 43104863 43104884 -101177605 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr12 43105019 43105061 -101177428 + (CA)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chr12 43105701 43105730 -101176759 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr12 43107703 43107752 -101174737 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr12 43108715 43108740 -101173749 + AT_rich Low_complexity Low_complexity 1 25 0 586 308 72 36 chr12 43109443 43109748 -101172741 + L2 LINE L2 2996 3311 -2 190 250 0 21 chr12 43109764 43109812 -101172677 + MIR SINE MIR 16 62 -200 733 246 34 34 chr12 43109821 43109907 -101172582 + MIR SINE MIR 3 88 -174 2464 122 6 0 chr12 43109907 43110269 -101172220 + THE1B LTR MaLR 1 364 0 733 246 34 34 chr12 43110269 43110361 -101172128 + MIR SINE MIR 87 181 -81 265 297 0 0 chr12 43110488 43110552 -101171937 - MIR3 SINE MIR -45 163 100 24 0 0 0 chr12 43110679 43110703 -101171786 + AT_rich Low_complexity Low_complexity 1 24 0 2175 192 86 22 chr12 43111422 43111911 -101170578 - MLT2B1 LTR ERVL 0 520 1 21 36 0 0 chr12 43113736 43113764 -101168725 + AT_rich Low_complexity Low_complexity 1 28 0 255 333 95 16 chr12 43113826 43113952 -101168537 - MIR SINE MIR -114 148 13 184 317 32 49 chr12 43114223 43114346 -101168143 - L2 LINE L2 -241 3031 2911 1472 211 28 46 chr12 43115405 43115798 -101166691 + MLT1B LTR MaLR 1 386 -4 2195 123 123 3 chr12 43115944 43116326 -101166163 + MSTA LTR MaLR 1 428 0 255 173 0 0 chr12 43116855 43116907 -101165582 + (TA)n Simple_repeat Simple_repeat 2 53 0 186 43 0 0 chr12 43117190 43117213 -101165276 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 387 274 147 18 chr12 43117871 43118073 -101164416 - MIR SINE MIR -44 218 1 1479 184 17 47 chr12 43118330 43118629 -101163860 + AluJo SINE Alu 1 290 -22 206 372 101 44 chr12 43118994 43119429 -101163060 + L2 LINE L2 2813 3272 0 248 260 73 57 chr12 43119880 43120003 -101162486 - MIR SINE MIR -50 212 88 241 313 131 12 chr12 43120016 43120176 -101162313 - MIR3 SINE MIR -19 189 11 296 212 172 80 chr12 43122017 43122168 -101160321 + MLT1K LTR MaLR 424 588 0 342 220 121 0 chr12 43122207 43122298 -101160191 - MIR SINE MIR -117 145 44 25 90 0 0 chr12 43122378 43122445 -101160044 + AT_rich Low_complexity Low_complexity 1 67 0 336 73 0 36 chr12 43122623 43122678 -101159811 - MADE1 DNA Mariner -27 53 1 6605 70 7 1 chr12 43123392 43124471 -101158018 + L1PA7 LINE L1 5056 6143 -11 30 0 0 0 chr12 43124536 43124566 -101157923 + AT_rich Low_complexity Low_complexity 1 30 0 1492 163 0 73 chr12 43124566 43124879 -101157610 - AluJb SINE Alu -22 290 1 3820 321 100 44 chr12 43125081 43125934 -101156555 - L2 LINE L2 -34 3279 2475 1966 151 0 0 chr12 43125934 43126244 -101156245 + AluSx SINE Alu 1 310 0 3820 321 100 44 chr12 43126244 43127370 -101155119 - L2 LINE L2 -838 2475 1414 2639 114 50 19 chr12 43127370 43127791 -101154698 - MER61C LTR ERV1 0 434 1 3820 321 100 44 chr12 43127791 43128565 -101153924 - L2 LINE L2 -1899 1414 347 2248 50 47 27 chr12 43128565 43128866 -101153623 - AluY SINE Alu -4 307 1 3820 321 100 44 chr12 43128866 43129000 -101153489 - L2 LINE L2 -2966 347 222 320 322 128 16 chr12 43129253 43129511 -101152978 + L2 LINE L2 3027 3313 0 590 266 132 21 chr12 43129778 43130079 -101152410 + LTR33 LTR ERVL 144 521 0 364 259 45 36 chr12 43130271 43130383 -101152106 - L2 LINE L2 -2 3270 3158 25 65 0 0 chr12 43130538 43130584 -101151905 + AT_rich Low_complexity Low_complexity 1 46 0 210 208 0 0 chr12 43130644 43130692 -101151797 + (TA)n Simple_repeat Simple_repeat 2 49 0 1459 207 97 21 chr12 43131426 43131592 -101150897 + MLT1C LTR MaLR 1 153 -314 327 78 0 0 chr12 43131592 43131643 -101150846 + (CA)n Simple_repeat Simple_repeat 2 52 0 1459 207 97 21 chr12 43131643 43131910 -101150579 + MLT1C LTR MaLR 153 467 0 2110 127 50 14 chr12 43132270 43132632 -101149857 - THE1C LTR MaLR 0 375 1 9126 127 65 32 chr12 43132632 43133751 -101148738 - THE1C-int LTR MaLR 0 1580 500 305 27 0 0 chr12 43133751 43133788 -101148701 + AluSq/x SINE Alu 100 136 -167 731 205 87 0 chr12 43133788 43133949 -101148540 + FAM SINE Alu 1 175 0 9126 127 65 32 chr12 43133949 43134321 -101148168 - THE1C-int LTR MaLR -1079 501 1 2014 136 55 17 chr12 43134321 43134682 -101147807 - THE1C LTR MaLR 0 375 1 304 252 56 103 chr12 43134707 43134814 -101147675 - MIR SINE MIR -114 148 47 374 151 269 25 chr12 43134819 43134938 -101147551 - MER69A DNA AcHobo -4 173 26 1930 132 0 21 chr12 43135048 43135363 -101147126 - AluSx SINE Alu 0 311 3 24 0 0 0 chr12 43135598 43135622 -101146867 + AT_rich Low_complexity Low_complexity 1 24 0 1126 301 96 34 chr12 43135852 43136740 -101145749 - HAL1 LINE L1 -334 2173 1231 29 101 0 0 chr12 43136746 43136845 -101145644 + AT_rich Low_complexity Low_complexity 1 99 0 200 317 119 30 chr12 43138024 43138125 -101144364 + L2 LINE L2 3154 3263 -9 368 240 0 0 chr12 43140471 43140546 -101141943 - L2 LINE L2 -1372 1942 1868 1490 190 21 31 chr12 43140587 43140740 -101141749 - AluJb SINE Alu -25 287 137 225 0 0 0 chr12 43140740 43140765 -101141724 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1490 190 21 31 chr12 43140765 43140901 -101141588 - AluJb SINE Alu -175 137 1 23 68 0 0 chr12 43140958 43141002 -101141487 + AT_rich Low_complexity Low_complexity 1 44 0 6067 109 19 2 chr12 43141639 43143304 -101139185 - L1PA10 LINE L1 -4 6164 4482 * 17143 36 3 0 chr12 43143294 43146157 -101136332 - L1PA4 LINE L1 0 6155 3286 6013 40 5 0 chr12 43146166 43146923 -101135566 + L1PA4 LINE L1 2520 3280 -2866 2126 127 48 0 chr12 43146922 43147276 -101135213 - L1PA10 LINE L1 -1634 4512 4142 * 21 36 0 0 chr12 43147326 43147354 -101135135 + AT_rich Low_complexity Low_complexity 1 28 0 716 255 94 16 chr12 43147737 43147929 -101134560 - MER58A DNA MER1_type -16 208 2 24 32 0 0 chr12 43148384 43148415 -101134074 + AT_rich Low_complexity Low_complexity 1 31 0 27 49 0 0 chr12 43148619 43148660 -101133829 + AT_rich Low_complexity Low_complexity 1 41 0 2565 115 3 6 chr12 43149835 43150200 -101132289 + THE1B LTR MaLR 1 364 0 452 274 0 26 chr12 43150244 43150357 -101132132 - L2 LINE L2 -1 3312 3203 213 338 27 0 chr12 43151027 43151101 -101131388 + MIR SINE MIR 78 153 -55 4084 23 0 6 chr12 43151276 43151757 -101130732 + L1PA2 LINE L1 5674 6151 -4 501 252 9 0 chr12 43152832 43152943 -101129546 + MIR SINE MIR 130 241 -21 368 319 15 15 chr12 43153159 43153294 -101129195 + MIR SINE MIR 20 154 -108 1494 286 63 29 chr12 43153323 43153953 -101128536 - MLT2F LTR ERVL -11 652 1 315 312 28 28 chr12 43154378 43154487 -101128002 - MER81 DNA DNA 0 114 6 371 301 153 28 chr12 43155654 43155830 -101126659 - MIR SINE MIR -13 249 52 1115 243 143 7 chr12 43155861 43156273 -101126216 + MLT1D LTR MaLR 30 497 -8 185 326 0 0 chr12 43156279 43156328 -101126161 - MIR SINE MIR -213 49 1 477 339 121 18 chr12 43156348 43156666 -101125823 + L2 LINE L2 1247 1627 -1687 1598 266 107 15 chr12 43156666 43157208 -101125281 - MLT1E LTR MaLR -1 592 1 477 339 121 18 chr12 43157208 43157343 -101125146 + L2 LINE L2 1627 1747 -1567 2347 84 6 28 chr12 43157345 43157665 -101124824 - AluSq SINE Alu 0 313 1 359 276 41 89 chr12 43157665 43157958 -101124531 - L1M4 LINE L1 -1008 5138 4860 207 328 0 0 chr12 43159327 43159394 -101123095 + CT-rich Low_complexity Low_complexity 2 68 0 352 313 112 45 chr12 43160332 43160556 -101121933 - MIR SINE MIR -12 250 12 558 303 34 52 chr12 43160591 43160858 -101121631 + MIR SINE MIR 1 262 0 431 317 147 21 chr12 43160922 43161297 -101121192 + MLT1L LTR MaLR 101 522 -93 213 293 0 0 chr12 43162222 43162263 -101120226 - MIR SINE MIR -196 66 26 285 303 87 29 chr12 43162363 43162710 -101119779 + L1ME4a LINE L1 5663 6029 -92 1832 148 7 23 chr12 43162980 43163283 -101119206 - AluJb SINE Alu -14 298 1 20842 35 3 1 chr12 43164035 43167362 -101115127 - L1PA4 LINE L1 -4 6151 2819 1861 44 0 0 chr12 43167362 43167590 -101114899 + L1PA4 LINE L1 2575 2802 -3344 44 35 0 0 chr12 43167788 43167846 -101114643 + AT_rich Low_complexity Low_complexity 1 58 0 382 340 187 5 chr12 43168541 43168744 -101113745 + MIR SINE MIR 2 241 -21 1961 115 0 21 chr12 43170344 43170630 -101111859 - AluSq SINE Alu -2 311 32 246 264 0 28 chr12 43173063 43173135 -101109354 - L2 LINE L2 -57 3256 3187 426 259 132 109 chr12 43173595 43174252 -101108237 - L1M2 LINE L1 -5444 1405 658 2015 114 11 4 chr12 43176833 43177169 -101105320 - AluSx SINE Alu 0 338 1 30 0 0 0 chr12 43177172 43177202 -101105287 + AT_rich Low_complexity Low_complexity 1 30 0 1787 154 21 0 chr12 43177202 43177488 -101105001 - AluSx SINE Alu -20 292 1 21 36 0 0 chr12 43178431 43178459 -101104030 + AT_rich Low_complexity Low_complexity 1 28 0 1528 192 0 39 chr12 43179443 43179750 -101102739 + AluJb SINE Alu 3 297 -15 27 29 0 0 chr12 43179965 43179999 -101102490 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr12 43182252 43182275 -101100214 + AT_rich Low_complexity Low_complexity 1 23 0 1923 156 0 19 chr12 43182989 43183304 -101099185 - AluJb SINE Alu -1 311 3 1609 27 0 0 chr12 43183672 43183857 -101098632 + L1PA3 LINE L1 5966 6150 -5 4472 150 8 12 chr12 43184346 43185112 -101097377 + L1PB4 LINE L1 5393 6155 -1 182 321 0 0 chr12 43186617 43186673 -101095816 + L2 LINE L2 3211 3266 -6 767 193 37 43 chr12 43188595 43188782 -101093707 - MIR SINE MIR 0 262 77 185 271 66 57 chr12 43188714 43188836 -101093653 + L2 LINE L2 1392 1514 -1800 * 185 402 0 0 chr12 43188905 43188992 -101093497 - L2 LINE L2 -508 2806 2720 1455 129 56 43 chr12 43189560 43189883 -101092606 - THE1C LTR MaLR 0 355 1 906 207 89 57 chr12 43190065 43190379 -101092110 - MER5C DNA MER1_type 0 324 1 498 292 77 37 chr12 43190386 43190745 -101091744 + L2 LINE L2 2680 3059 -213 1799 242 121 32 chr12 43190841 43191552 -101090937 - L1ME3A LINE L1 -31 6139 5366 271 64 39 51 chr12 43191578 43191656 -101090833 + (TTAA)n Simple_repeat Simple_repeat 1 77 0 23 92 0 0 chr12 43192456 43192521 -101089968 + AT_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr12 43192552 43192580 -101089909 + AT_rich Low_complexity Low_complexity 1 28 0 192 324 28 0 chr12 43192739 43192810 -101089679 - MIR SINE MIR -3 259 187 211 152 0 43 chr12 43193903 43193949 -101088540 + T-rich Low_complexity Low_complexity 4 47 0 192 179 0 0 chr12 43194099 43194138 -101088351 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr12 43194187 43194209 -101088280 + AT_rich Low_complexity Low_complexity 1 22 0 7593 27 0 0 chr12 43194406 43195472 -101087017 - L1PA4 LINE L1 0 6155 5117 22 0 0 0 chr12 43197623 43197645 -101084844 + AT_rich Low_complexity Low_complexity 1 22 0 349 330 45 45 chr12 43197843 43198067 -101084422 - L2 LINE L2 -211 3061 2838 580 343 47 0 chr12 43198228 43198461 -101084028 - L2 LINE L2 -540 2774 2531 1341 75 6 0 chr12 43198590 43198764 -101083725 + MER107 DNA MER1_type 23 197 0 618 278 83 28 chr12 43198878 43199094 -101083395 + MIR SINE MIR 6 233 -29 1685 169 3 36 chr12 43199236 43199538 -101082951 + AluJo SINE Alu 13 304 -8 212 333 70 53 chr12 43199745 43199859 -101082630 - MIR3 SINE MIR -11 197 82 308 309 45 9 chr12 43200378 43200488 -101082001 + MER5A DNA MER1_type 2 115 -74 22 35 0 0 chr12 43201177 43201206 -101081283 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr12 43201632 43201661 -101080828 + AT_rich Low_complexity Low_complexity 1 29 0 633 216 81 0 chr12 43202349 43202497 -101079992 + MER45A DNA AcHobo 1 160 -18 24 53 0 0 chr12 43204480 43204518 -101077971 + AT_rich Low_complexity Low_complexity 1 38 0 2113 159 29 21 chr12 43205209 43205592 -101076897 - MLT1B LTR MaLR -2 388 3 485 220 206 81 chr12 43206074 43206370 -101076119 + MLT1J2 LTR MaLR 94 426 -24 2206 109 0 20 chr12 43207608 43207912 -101074577 - AluSx SINE Alu -14 298 1 442 152 13 0 chr12 43208103 43208182 -101074307 + MADE1 DNA Mariner 1 80 0 209 229 21 0 chr12 43208441 43208489 -101074000 + CT-rich Low_complexity Low_complexity 1 49 0 21 71 0 0 chr12 43208663 43208705 -101073784 + AT_rich Low_complexity Low_complexity 1 42 0 712 217 151 27 chr12 43208738 43209244 -101073245 - MER76 LTR ERV -50 638 6 372 223 43 0 chr12 43209292 43209386 -101073103 - MIR SINE MIR -72 190 93 639 326 25 19 chr12 43211263 43211585 -101070904 + L2 LINE L2 2988 3311 -2 1833 167 0 0 chr12 43212470 43212775 -101069714 + AluJb SINE Alu 1 305 0 396 0 0 0 chr12 43212964 43213008 -101069481 + (CA)n Simple_repeat Simple_repeat 2 45 0 24 39 0 0 chr12 43214431 43214457 -101068032 + GC_rich Low_complexity Low_complexity 1 26 0 367 334 84 52 chr12 43214471 43214911 -101067578 - L1M2 LINE L1 -5907 942 489 180 68 45 23 chr12 43214988 43215032 -101067457 + (CGGGG)n Simple_repeat Simple_repeat 2 46 0 33 0 0 0 chr12 43215036 43215069 -101067420 + GC_rich Low_complexity Low_complexity 1 33 0 209 243 0 0 chr12 43216027 43216064 -101066425 - MIR SINE MIR -196 66 30 280 305 95 37 chr12 43216133 43216513 -101065976 + L1ME4a LINE L1 5628 6029 -92 1839 148 7 23 chr12 43216783 43217086 -101065403 - AluJb SINE Alu -14 298 1 42918 40 21 3 chr12 43217835 43223859 -101058630 - L1PA4 LINE L1 -2 6153 15 2199 153 11 3 chr12 43223859 43224211 -101058278 + THE1B LTR MaLR 10 364 0 1511 240 78 57 chr12 43224211 43224378 -101058111 + L1ME3A LINE L1 5610 5772 -398 2364 152 127 38 chr12 43224378 43224851 -101057638 - MLT2B2 LTR ERVL 0 515 1 1511 240 78 57 chr12 43224851 43225009 -101057480 + L1ME3A LINE L1 5772 5925 -245 616 106 11 0 chr12 43225009 43225103 -101057386 + L1MA4 LINE L1 6201 6295 -5 1511 240 78 57 chr12 43225103 43225325 -101057164 + L1ME3A LINE L1 5925 6170 0 185 355 19 32 chr12 43225543 43225698 -101056791 - L2 LINE L2 -275 2997 2845 36 0 0 0 chr12 43225733 43225769 -101056720 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr12 43226324 43226358 -101056131 + AT_rich Low_complexity Low_complexity 1 34 0 930 170 35 6 chr12 43228217 43228388 -101054101 - AluJo SINE Alu -17 295 120 225 204 0 0 chr12 43228394 43228438 -101054051 + T-rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr12 43229078 43229101 -101053388 + AT_rich Low_complexity Low_complexity 1 23 0 22029 37 5 2 chr12 43229101 43232426 -101050063 - L1PA3 LINE L1 -3 6152 2819 1858 52 0 4 chr12 43232426 43232655 -101049834 + L1PA3 LINE L1 2575 2802 -3344 44 35 0 0 chr12 43232853 43232911 -101049578 + AT_rich Low_complexity Low_complexity 1 58 0 301 390 0 0 chr12 43233522 43233663 -101048826 + G-rich Low_complexity Low_complexity 1 141 0 251 339 29 12 chr12 43233705 43233876 -101048613 + GA-rich Low_complexity Low_complexity 2 175 0 188 139 0 23 chr12 43233884 43233927 -101048562 + (GGGA)n Simple_repeat Simple_repeat 1 42 0 327 179 0 0 chr12 43234078 43234145 -101048344 + G-rich Low_complexity Low_complexity 1 67 0 291 309 45 9 chr12 43234587 43234697 -101047792 - MER5A DNA MER1_type -74 115 2 193 333 70 53 chr12 43235215 43235329 -101047160 + MIR3 SINE MIR 82 197 -11 1687 166 3 36 chr12 43235536 43235838 -101046651 - AluJo SINE Alu -8 304 13 610 278 83 28 chr12 43235980 43236196 -101046293 - MIR SINE MIR -29 233 6 1370 75 6 0 chr12 43236310 43236484 -101046005 - MER107 DNA MER1_type 0 197 23 579 343 47 0 chr12 43236613 43236846 -101045643 + L2 LINE L2 2531 2774 -540 341 330 45 45 chr12 43237007 43237231 -101045258 + L2 LINE L2 2838 3061 -211 22 0 0 0 chr12 43237429 43237451 -101045038 + AT_rich Low_complexity Low_complexity 1 22 0 48 43 0 0 chr12 43239638 43239707 -101042782 + GC_rich Low_complexity Low_complexity 1 69 0 1030 296 90 19 chr12 43241082 43241548 -101040941 + MLT1D LTR MaLR 7 505 0 6036 65 1 1 chr12 43241881 43242645 -101039844 + L1PA4 LINE L1 5369 6132 -23 248 203 14 40 chr12 43244186 43244260 -101038229 + C-rich Low_complexity Low_complexity 4 75 0 291 110 14 41 chr12 43244361 43244434 -101038055 + (TCCCC)n Simple_repeat Simple_repeat 3 73 0 4982 94 1 1 chr12 43244667 43245358 -101037131 + L1P LINE L1 2520 3210 -2936 215 233 23 23 chr12 43245610 43245696 -101036793 + C-rich Low_complexity Low_complexity 6 91 0 3298 92 2 2 chr12 43245830 43246264 -101036225 + L1PB2 LINE L1 5716 6149 -2 981 146 12 24 chr12 43246276 43246440 -101036049 + FRAM SINE Alu 1 162 -14 1921 146 7 3 chr12 43246444 43246738 -101035751 + AluJb SINE Alu 1 295 -17 191 211 0 0 chr12 43246765 43246803 -101035686 + MER5B DNA MER1_type 141 178 0 334 148 98 0 chr12 43247296 43247357 -101035132 - MLT1C LTR MaLR 0 467 401 2018 121 36 23 chr12 43247360 43247667 -101034822 + AluSx SINE Alu 1 311 -1 188 386 0 0 chr12 43247917 43247987 -101034502 + L2 LINE L2 3201 3270 -2 543 303 65 13 chr12 43248835 43249066 -101033423 + HsTC2 DNA Tc2 1 243 -1655 213 318 8 8 chr12 43249263 43249395 -101033094 + (CCCG)n Simple_repeat Simple_repeat 3 134 0 23 54 0 0 chr12 43249455 43249492 -101032997 + GC_rich Low_complexity Low_complexity 1 37 0 321 313 112 45 chr12 43249769 43249993 -101032496 - MIR SINE MIR -12 250 12 509 307 34 52 chr12 43250028 43250295 -101032194 + MIR SINE MIR 1 262 0 25 65 0 0 chr12 43250729 43250775 -101031714 + GC_rich Low_complexity Low_complexity 1 46 0 674 220 187 14 chr12 43251360 43251574 -101030915 - MIR SINE MIR -10 252 2 457 286 243 9 chr12 43251638 43251848 -101030641 + MER115 DNA AcHobo 12 270 -423 6887 151 8 22 chr12 43252249 43253349 -101029140 + L1P3 LINE L1 138 1274 -4835 189 74 0 0 chr12 43253349 43253376 -101029113 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6887 151 8 22 chr12 43253376 43253477 -101029012 + L1P3 LINE L1 1274 1375 -4734 348 299 28 7 chr12 43254326 43254470 -101028019 - L2 LINE L2 -270 3002 2856 201 181 60 129 chr12 43254699 43254815 -101027674 + L2 LINE L2 3206 3313 0 234 91 0 0 chr12 43256287 43256320 -101026169 + (A)n Simple_repeat Simple_repeat 1 33 0 201 147 0 0 chr12 43256459 43256493 -101025996 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 22 35 0 0 chr12 43257941 43257970 -101024519 + AT_rich Low_complexity Low_complexity 1 29 0 27 73 0 0 chr12 43259986 43260041 -101022448 + AT_rich Low_complexity Low_complexity 1 55 0 4432 31 7 0 chr12 43260605 43261146 -101021343 - L1PA4 LINE L1 -870 5276 4732 6967 43 2 1 chr12 43261146 43262004 -101020485 + L1PA4 LINE L1 5293 6151 -4 507 262 59 53 chr12 43263641 43263828 -101018661 - Charlie8 DNA MER1_type -2229 188 1 212 329 19 51 chr12 43264566 43264724 -101017765 - L2 LINE L2 -627 2687 2535 5118 146 0 6 chr12 43265568 43266417 -101016072 - L1PA11 LINE L1 -1038 5108 4265 1775 86 3 4 chr12 43266412 43266780 -101015709 + L1PA11 LINE L1 5125 5492 -669 * 27 0 0 0 chr12 43266801 43266828 -101015661 + AT_rich Low_complexity Low_complexity 1 27 0 4772 94 18 17 chr12 43266837 43267542 -101014947 + L1PA11 LINE L1 5467 6172 -2 2191 135 16 28 chr12 43268621 43268984 -101013505 - MLT1A1 LTR MaLR -5 360 2 847 223 112 14 chr12 43269125 43269340 -101013149 - MER46A DNA MER2_type 0 236 1 672 326 23 9 chr12 43269505 43269720 -101012769 + MIR SINE MIR 20 237 -25 963 261 76 36 chr12 43269904 43270234 -101012255 + MLT2F LTR ERVL 18 360 -303 225 0 0 0 chr12 43270684 43270709 -101011780 + (CA)n Simple_repeat Simple_repeat 2 26 0 251 162 0 0 chr12 43270726 43270763 -101011726 - AluJb SINE Alu -187 115 79 43 20 0 0 chr12 43271667 43271717 -101010772 + AT_rich Low_complexity Low_complexity 1 50 0 1615 285 136 17 chr12 43271952 43272723 -101009766 + L2 LINE L2 2090 3027 -286 2831 12 0 19 chr12 43272723 43273045 -101009444 - AluYb8 SINE Alu -2 316 1 1615 285 136 17 chr12 43273045 43273371 -101009118 + L2 LINE L2 3027 3313 0 205 333 122 0 chr12 43273390 43273480 -101009009 - L2 LINE L2 -10 3303 3203 358 259 91 0 chr12 43273555 43273698 -101008791 + L1MC5 LINE L1 7720 7875 -86 190 331 86 22 chr12 43275073 43275212 -101007277 - L2 LINE L2 -1 3312 3165 486 256 70 8 chr12 43275337 43275466 -101007023 + MER5A DNA MER1_type 10 146 -43 219 314 105 24 chr12 43275362 43275486 -101007003 - MER5A DNA MER1_type -28 161 28 * 34 42 0 0 chr12 43276801 43276849 -101005640 + AT_rich Low_complexity Low_complexity 1 48 0 212 250 0 36 chr12 43277139 43277195 -101005294 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 351 130 52 39 chr12 43277250 43277327 -101005162 + MADE1 DNA Mariner 3 80 0 7731 136 26 14 chr12 43278449 43279734 -101002755 - HSMAR2 DNA Mariner -1 1301 1 1593 203 0 0 chr12 43279889 43280193 -101002296 + AluJo SINE Alu 1 304 0 1322 208 200 31 chr12 43280225 43280521 -101001968 + L1ME1 LINE L1 5566 5811 -355 1964 130 21 0 chr12 43280521 43280806 -101001683 + AluSg SINE Alu 1 291 -19 1322 208 200 31 chr12 43280806 43281019 -101001470 + L1ME1 LINE L1 5811 6161 -5 1590 189 6 6 chr12 43281158 43281481 -101001008 - L1 LINE L1 -927 5219 4897 * 3348 155 17 3 chr12 43281480 43282067 -101000422 + L1MA4 LINE L1 5426 6020 -280 330 67 0 0 chr12 43282081 43282126 -101000363 + (TG)n Simple_repeat Simple_repeat 2 46 0 275 203 40 0 chr12 43282126 43282194 -101000295 + L1MB2 LINE L1 6091 6161 -10 366 293 177 7 chr12 43282317 43282464 -101000025 - MIR SINE MIR -38 224 53 213 366 42 0 chr12 43282628 43282699 -100999790 - L2 LINE L2 -2 3311 3238 1089 181 105 34 chr12 43282865 43283103 -100999386 + AluJo SINE Alu 1 255 -57 226 48 0 48 chr12 43283105 43283147 -100999342 + (GAAAA)n Simple_repeat Simple_repeat 3 42 0 307 0 47 0 chr12 43283463 43283506 -100998983 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 2516 158 14 7 chr12 43283673 43284091 -100998398 - MSTB LTR MaLR -4 422 2 430 176 41 29 chr12 43284622 43284723 -100997766 + MLT1A1 LTR MaLR 276 365 0 419 304 79 75 chr12 43284751 43285247 -100997242 + L2 LINE L2 2271 2768 -546 1193 184 19 60 chr12 43285257 43285515 -100996974 - MLT1A1 LTR MaLR -69 388 40 245 315 99 33 chr12 43285534 43285747 -100996742 - L2 LINE L2 -1078 2236 2010 422 284 159 0 chr12 43285960 43286136 -100996353 - MIR SINE MIR -10 252 49 241 250 17 0 chr12 43286391 43286451 -100996038 + GA-rich Low_complexity Low_complexity 2 62 0 770 266 54 14 chr12 43286688 43286910 -100995579 - L2 LINE L2 0 3313 3083 26 30 0 0 chr12 43287724 43287757 -100994732 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr12 43288565 43288588 -100993901 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 43288646 43288667 -100993822 + AT_rich Low_complexity Low_complexity 1 21 0 2419 77 0 0 chr12 43289533 43289844 -100992645 - AluY SINE Alu 0 311 1 21 36 0 0 chr12 43291009 43291037 -100991452 + AT_rich Low_complexity Low_complexity 1 28 0 1124 86 0 0 chr12 43291326 43291465 -100991024 + AluSq/x SINE Alu 1 139 -173 2046 138 0 0 chr12 43291466 43291757 -100990732 + AluSx SINE Alu 7 297 -15 1885 139 51 12 chr12 43292835 43293166 -100989323 + L1PA16 LINE L1 5819 6162 -4 27 81 0 0 chr12 43293411 43293473 -100989016 + AT_rich Low_complexity Low_complexity 1 62 0 336 208 104 0 chr12 43293800 43293906 -100988583 + MER113 DNA MER1_type? 110 226 -295 2840 3 0 0 chr12 43294085 43294391 -100988098 + AluYa5 SINE Alu 1 306 -5 437 250 200 0 chr12 43295286 43295446 -100987043 - MER117 DNA MER1_type -4 193 2 211 200 0 50 chr12 43295454 43295514 -100986975 + A-rich Low_complexity Low_complexity 4 60 0 1941 132 9 38 chr12 43295603 43295922 -100986567 + AluSq SINE Alu 1 310 -3 182 207 0 171 chr12 43296085 43296167 -100986322 - L2 LINE L2 -8 3305 3238 260 285 139 29 chr12 43296202 43296339 -100986150 - MIR SINE MIR -32 230 79 195 253 81 30 chr12 43298157 43298256 -100984233 + MIR SINE MIR 102 205 -57 604 35 23 0 chr12 43298316 43298403 -100984086 + (TG)n Simple_repeat Simple_repeat 2 90 0 22 56 0 0 chr12 43302369 43302405 -100980084 + AT_rich Low_complexity Low_complexity 1 36 0 251 340 196 21 chr12 43302674 43302868 -100979621 - L3 LINE CR1 -107 1470 1243 366 281 129 57 chr12 43302910 43303227 -100979262 + L3 LINE CR1 403 742 -835 * 556 297 95 9 chr12 43303214 43303446 -100979043 + L2 LINE L2 2956 3207 -106 830 186 23 40 chr12 43304146 43304323 -100978166 + MER106A DNA MER1_type 5 178 -58 217 184 0 58 chr12 43304516 43304603 -100977886 + (TA)n Simple_repeat Simple_repeat 2 83 0 199 200 25 0 chr12 43304695 43304735 -100977754 - MIR SINE MIR -161 101 61 210 348 68 25 chr12 43304736 43304854 -100977635 + MIR SINE MIR 106 228 -34 685 167 54 6 chr12 43304958 43305122 -100977367 + L1MC3 LINE L1 7612 7994 -1 203 318 102 11 chr12 43307233 43307321 -100975168 + MIR3 SINE MIR 89 184 -24 12812 98 4 5 chr12 43307975 43309863 -100972626 + L1PA7 LINE L1 8 1891 -4570 18465 98 9 2 chr12 43309876 43314071 -100968418 + L1PA7 LINE L1 2251 6469 0 240 170 0 0 chr12 43314377 43314430 -100968059 + T-rich Low_complexity Low_complexity 1 53 0 348 264 82 93 chr12 43315234 43315416 -100967073 + MIR3 SINE MIR 16 195 -13 25 31 0 0 chr12 43319203 43319235 -100963254 + AT_rich Low_complexity Low_complexity 1 32 0 226 348 62 0 chr12 43319432 43319544 -100962945 + MIR SINE MIR 34 152 -110 239 272 26 131 chr12 43320957 43321270 -100961219 - MLT1J2 LTR MaLR -93 357 78 283 205 150 50 chr12 43322235 43322361 -100960128 + MIR SINE MIR 2 142 -66 27 49 0 0 chr12 43322586 43322627 -100959862 + AT_rich Low_complexity Low_complexity 1 41 0 850 272 57 17 chr12 43322870 43323338 -100959151 + HAL1 LINE L1 1190 1770 -737 7966 138 5 21 chr12 43323638 43324733 -100957756 + HSMAR2 DNA Mariner 2 1074 -228 2013 142 7 0 chr12 43324733 43325036 -100957453 + AluJb SINE Alu 1 305 -7 7966 138 5 21 chr12 43325036 43325262 -100957227 + HSMAR2 DNA Mariner 1074 1302 0 28 0 0 0 chr12 43327699 43327727 -100954762 + AT_rich Low_complexity Low_complexity 1 28 0 241 379 8 32 chr12 43329841 43329965 -100952524 + MIR SINE MIR 20 140 -122 202 194 0 0 chr12 43330118 43330154 -100952335 + (TG)n Simple_repeat Simple_repeat 1 36 0 256 228 76 0 chr12 43330157 43330236 -100952253 + L1MC4 LINE L1 6614 6698 -1344 26 0 0 0 chr12 43330327 43330353 -100952136 + AT_rich Low_complexity Low_complexity 1 26 0 363 60 0 0 chr12 43330991 43331041 -100951448 + (CA)n Simple_repeat Simple_repeat 2 51 0 718 250 16 49 chr12 43332451 43332695 -100949794 - MER106A DNA MER1_type 0 236 1 198 268 134 21 chr12 43332859 43332956 -100949533 + L2 LINE L2 1381 1488 -1826 261 250 18 0 chr12 43333402 43333458 -100949031 + MIR SINE MIR 203 259 -3 1253 217 110 36 chr12 43333471 43333807 -100948682 - MLT1A2 LTR MaLR -13 361 1 3936 223 61 91 chr12 43333813 43335215 -100947274 - MLT1A2-int LTR MaLR -7 1364 5 1159 181 15 128 chr12 43335219 43335611 -100946878 - MLT1A1 LTR MaLR 0 365 18 1761 167 70 30 chr12 43337264 43337635 -100944854 - MSTD LTR MaLR -1 395 10 180 0 0 0 chr12 43337737 43337757 -100944732 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 23 0 0 0 chr12 43337824 43337847 -100944642 + AT_rich Low_complexity Low_complexity 1 23 0 2103 151 0 0 chr12 43337984 43338288 -100944201 - AluSx SINE Alu -8 304 1 216 67 0 0 chr12 43338308 43338338 -100944151 + (TG)n Simple_repeat Simple_repeat 1 30 0 272 256 163 12 chr12 43339490 43339576 -100942913 - MER5B DNA MER1_type -90 99 1 2477 113 17 11 chr12 43340520 43340882 -100941607 - THE1B LTR MaLR 0 364 1 276 370 115 42 chr12 43342382 43342739 -100939750 - L2 LINE L2 -18 3254 2872 21 0 0 0 chr12 43343532 43343553 -100938936 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr12 43344512 43344551 -100937938 + (TG)n Simple_repeat Simple_repeat 2 40 0 257 50 0 25 chr12 43345104 43345144 -100937345 + (TA)n Simple_repeat Simple_repeat 1 39 0 1983 166 25 6 chr12 43345261 43345617 -100936872 - MLT2D LTR ERVL -48 366 4 389 142 133 62 chr12 43346446 43346559 -100935930 - L1ME4a LINE L1 -15 6106 5986 222 349 85 0 chr12 43346817 43346923 -100935566 + MIR3 SINE MIR 14 128 -80 393 250 30 15 chr12 43348909 43349041 -100933448 + L1ME4a LINE L1 5977 6110 -11 1723 153 30 0 chr12 43350086 43350381 -100932108 - AluSx SINE Alu -8 304 1 2394 70 0 19 chr12 43350534 43350850 -100931639 - AluY SINE Alu 0 311 2 210 191 0 0 chr12 43350917 43350964 -100931525 + T-rich Low_complexity Low_complexity 3 49 0 22 0 0 0 chr12 43351366 43351388 -100931101 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 43351655 43351686 -100930803 + AT_rich Low_complexity Low_complexity 1 31 0 22 80 0 0 chr12 43351765 43351815 -100930674 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr12 43351892 43351914 -100930575 + AT_rich Low_complexity Low_complexity 1 22 0 232 111 0 0 chr12 43352703 43352739 -100929750 + MADE1 DNA Mariner 1 36 -44 851 187 137 70 chr12 43352753 43353052 -100929437 + MER33 DNA MER1_type 2 320 -4 1697 188 30 7 chr12 43354029 43354333 -100928156 - AluJb SINE Alu -1 311 1 276 130 0 0 chr12 43355849 43355895 -100926594 + (TG)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chr12 43355996 43356019 -100926470 + AT_rich Low_complexity Low_complexity 1 23 0 812 202 54 39 chr12 43356380 43356583 -100925906 + AluJo SINE Alu 86 291 -21 400 188 0 103 chr12 43358382 43358499 -100923990 + MIR SINE MIR 48 152 -110 263 266 62 62 chr12 43358585 43358698 -100923791 + MIR SINE MIR 150 262 0 1559 138 240 10 chr12 43359677 43359981 -100922508 - THE1C LTR MaLR 0 375 2 625 351 128 17 chr12 43360067 43360851 -100921638 - L2 LINE L2 -1977 1337 467 650 299 35 35 chr12 43360911 43361165 -100921324 - MIR SINE MIR 0 262 9 180 111 0 0 chr12 43362445 43362472 -100920017 + (A)n Simple_repeat Simple_repeat 1 27 0 980 48 0 0 chr12 43363321 43363445 -100919044 - L1PA5 LINE L1 -1 6153 6030 3477 139 22 74 chr12 43364594 43365321 -100917168 - LTR8 LTR ERV1 -2 689 1 750 211 0 0 chr12 43365980 43366113 -100916376 - FLAM_A SINE Alu 0 133 1 1504 181 22 27 chr12 43366500 43366903 -100915586 + L1MA6 LINE L1 3125 3525 -2621 * 6358 162 11 9 chr12 43366902 43368783 -100913706 + L1MA3 LINE L1 4408 6292 -13 9004 166 22 25 chr12 43368794 43371193 -100911296 + L1MA6 LINE L1 3507 5907 -393 1325 218 12 0 chr12 43371192 43371513 -100910976 - L1 LINE L1 -2685 3461 3137 * 399 114 14 0 chr12 43371513 43371577 -100910912 + L1PB2 LINE L1 6074 6144 -7 1783 172 16 11 chr12 43371577 43371940 -100910549 + L1MA6 LINE L1 5931 6298 -2 21 36 0 0 chr12 43372757 43372785 -100909704 + AT_rich Low_complexity Low_complexity 1 28 0 206 22 22 65 chr12 43372793 43372839 -100909650 + (TA)n Simple_repeat Simple_repeat 2 45 0 234 288 55 0 chr12 43374106 43374179 -100908310 - MIR SINE MIR -116 146 70 2455 71 0 0 chr12 43374236 43374545 -100907944 + AluY SINE Alu 1 309 -2 23 0 0 0 chr12 43374545 43374568 -100907921 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 43374638 43374659 -100907830 + AT_rich Low_complexity Low_complexity 1 21 0 3998 198 31 7 chr12 43374752 43375844 -100906645 - L1MB8 LINE L1 -51 6127 5009 2379 181 33 61 chr12 43376312 43376855 -100905634 + Charlie1a DNA MER1_type 1 528 -927 738 247 0 0 chr12 43376863 43377025 -100905464 + Charlie1a DNA MER1_type 926 1087 -368 507 236 69 37 chr12 43377033 43377279 -100905210 + Charlie1a DNA MER1_type 1202 1455 0 22 0 0 0 chr12 43377571 43377593 -100904896 + AT_rich Low_complexity Low_complexity 1 22 0 343 304 39 0 chr12 43378157 43378259 -100904230 - L2 LINE L2 0 3313 3208 184 299 102 54 chr12 43379097 43379244 -100903245 - L2 LINE L2 -950 2364 2211 2074 133 146 8 chr12 43379446 43379822 -100902667 - MSTA LTR MaLR 0 428 1 638 209 0 9 chr12 43379920 43380063 -100902426 + FLAM_A SINE Alu 2 143 0 332 329 175 15 chr12 43380112 43380455 -100902034 - L2 LINE L2 -1291 2023 1626 202 200 0 0 chr12 43381316 43381356 -100901133 + (CTCA)n Simple_repeat Simple_repeat 3 42 0 364 322 104 28 chr12 43381692 43381903 -100900586 + LTR67 LTR ERVL 324 550 -7 196 413 48 11 chr12 43381918 43382107 -100900382 - L2 LINE L2 -494 2820 2625 189 353 38 9 chr12 43383070 43383180 -100899309 + MIR SINE MIR 39 152 -56 291 146 0 0 chr12 43385189 43385244 -100897245 + (TC)n Simple_repeat Simple_repeat 1 55 0 294 297 83 7 chr12 43385305 43385450 -100897039 - MIR SINE MIR -7 255 100 328 302 43 35 chr12 43385502 43385618 -100896871 - L2 LINE L2 -1 3271 3155 341 268 117 40 chr12 43386540 43386683 -100895806 - MIR SINE MIR -48 160 5 32 0 0 0 chr12 43386993 43387025 -100895464 + AT_rich Low_complexity Low_complexity 1 32 0 2162 105 42 33 chr12 43387513 43387874 -100894615 + THE1B LTR MaLR 1 364 0 357 295 118 18 chr12 43388464 43388620 -100893869 - MER5B DNA MER1_type -21 168 1 342 0 0 0 chr12 43388995 43389033 -100893456 + (TG)n Simple_repeat Simple_repeat 2 39 0 259 232 14 29 chr12 43389043 43389112 -100893377 + (CATA)n Simple_repeat Simple_repeat 4 71 0 25 0 0 0 chr12 43390436 43390461 -100892028 + AT_rich Low_complexity Low_complexity 1 25 0 2191 132 3 0 chr12 43395294 43395605 -100886884 + AluSx SINE Alu 1 312 0 25 0 0 0 chr12 43395849 43395874 -100886615 + AT_rich Low_complexity Low_complexity 1 25 0 503 325 55 55 chr12 43397304 43397723 -100884766 - L1MEc LINE L1 -3551 2578 2160 235 296 98 15 chr12 43398420 43398623 -100883866 - L1MEc LINE L1 -4790 1520 1301 369 300 86 22 chr12 43398629 43398896 -100883593 - L1MEc LINE L1 -4865 1254 971 22 35 0 0 chr12 43398916 43398945 -100883544 + AT_rich Low_complexity Low_complexity 1 29 0 21 82 0 0 chr12 43399185 43399234 -100883255 + AT_rich Low_complexity Low_complexity 1 49 0 225 398 48 6 chr12 43399423 43399589 -100882900 - L1MEc LINE L1 -5666 453 281 263 240 54 47 chr12 43399757 43399886 -100882603 - L1MEc LINE L1 -5980 139 10 198 260 269 10 chr12 43400029 43400133 -100882356 + L2 LINE L2 3132 3262 -10 224 338 155 30 chr12 43400335 43400631 -100881858 - L2 LINE L2 0 3313 2981 7189 100 10 25 chr12 43400957 43402044 -100880445 - MER11C LTR ERVK 0 1071 1 565 245 96 55 chr12 43402044 43402372 -100880117 - LTR35 LTR ERV1 -7 672 349 212 270 32 0 chr12 43402760 43402823 -100879666 - L2 LINE L2 -1019 2295 2231 966 271 61 32 chr12 43402832 43403027 -100879462 + MLT1F1 LTR MaLR 1 189 -378 213 39 0 0 chr12 43403027 43403053 -100879436 + (TC)n Simple_repeat Simple_repeat 2 27 0 966 271 61 32 chr12 43403053 43403377 -100879112 + MLT1F1 LTR MaLR 189 567 0 571 252 50 0 chr12 43403498 43403637 -100878852 - MIR SINE MIR -13 249 104 8441 200 36 22 chr12 43403666 43403804 -100878685 - L1MA9 LINE L1 -1 6311 6176 183 100 0 0 chr12 43403804 43403834 -100878655 + (TG)n Simple_repeat Simple_repeat 1 30 0 8441 200 36 22 chr12 43403834 43405487 -100877002 - L1MA9 LINE L1 -136 6176 4547 1893 98 4 4 chr12 43405487 43405742 -100876747 + AluY SINE Alu 39 293 -18 8441 200 36 22 chr12 43405742 43406587 -100875902 - L1MA9 LINE L1 -1765 4547 3684 2243 119 0 0 chr12 43406587 43406889 -100875600 - AluSq SINE Alu -11 302 1 8441 200 36 22 chr12 43406889 43407508 -100874981 - L1MA9 LINE L1 -2628 3684 3075 232 385 0 12 chr12 43407801 43407884 -100874605 + MIR SINE MIR 21 102 -160 2647 186 30 35 chr12 43407891 43408434 -100874055 + MLT1F1 LTR MaLR 1 540 -27 873 208 49 6 chr12 43408507 43408690 -100873799 - MER3 DNA MER1_type -2 207 17 669 169 93 41 chr12 43408691 43408863 -100873626 - FRAM SINE Alu 0 176 1 738 123 25 0 chr12 43408979 43409101 -100873388 - AluYa8 SINE Alu -21 289 165 3023 82 2 0 chr12 43409101 43409525 -100872964 - L1P LINE L1 -4296 1850 1426 355 262 70 96 chr12 43409764 43409951 -100872538 - MIR3 SINE MIR -13 195 14 390 279 20 0 chr12 43410135 43410282 -100872207 - AluSq/x SINE Alu -152 150 1 3059 269 58 46 chr12 43410626 43413609 -100868880 - L1 LINE L1 -2807 3543 853 977 42 0 0 chr12 43415429 43415547 -100866942 - AluSg/x SINE Alu -3 306 189 228 154 0 26 chr12 43415569 43415608 -100866881 - Alu SINE Alu -13 289 252 262 287 127 84 chr12 43416120 43416357 -100866132 + MIR SINE MIR 4 250 -12 573 323 151 39 chr12 43416442 43416873 -100865616 - L2 LINE L2 0 3313 2835 5178 181 11 0 chr12 43416874 43417809 -100864680 + L1PA13 LINE L1 3255 4199 -1947 5449 78 65 39 chr12 43417813 43418737 -100863752 + L1PA13 LINE L1 4397 5373 -790 1670 158 0 28 chr12 43418737 43419022 -100863467 + AluSx SINE Alu 1 277 -35 5449 78 65 39 chr12 43419022 43419835 -100862654 + L1PA13 LINE L1 5373 6163 0 1184 277 108 13 chr12 43419839 43420236 -100862253 - L2 LINE L2 -475 2839 2405 24 0 0 0 chr12 43420713 43420737 -100861752 + AT_rich Low_complexity Low_complexity 1 24 0 284 307 19 26 chr12 43423668 43423950 -100858539 + MER112 DNA MER1_type 1 260 0 217 274 20 0 chr12 43424396 43424447 -100858042 - L2 LINE L2 -2 3270 3219 1086 241 24 130 chr12 43425018 43425402 -100857087 - MLT1H1 LTR MaLR 0 555 216 1267 249 25 17 chr12 43425402 43425764 -100856725 - MLT1A1 LTR MaLR 0 365 1 1086 241 24 130 chr12 43425764 43425793 -100856696 - MLT1H1 LTR MaLR -339 216 186 1809 195 65 111 chr12 43425876 43426444 -100856045 - MLT1F1 LTR MaLR 0 567 26 704 240 31 110 chr12 43426458 43426812 -100855677 - MLT1F1-int LTR MaLR 0 1371 1046 642 325 20 14 chr12 43427577 43427872 -100854617 - MLT1F1-int LTR MaLR -784 587 291 279 79 0 0 chr12 43427986 43428024 -100854465 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1011 191 37 19 chr12 43428057 43428272 -100854217 - MLT1F1 LTR MaLR -1 566 348 2196 94 0 33 chr12 43430103 43430410 -100852079 + AluY SINE Alu 13 309 -2 32 0 0 0 chr12 43430614 43430646 -100851843 + AT_rich Low_complexity Low_complexity 1 32 0 752 301 28 20 chr12 43430803 43431052 -100851437 - LTR16A LTR ERVL 0 450 200 954 223 19 5 chr12 43432779 43432985 -100849504 + MER3 DNA MER1_type 1 209 0 25 31 0 0 chr12 43433486 43433518 -100848971 + AT_rich Low_complexity Low_complexity 1 32 0 32 26 0 0 chr12 43433764 43433803 -100848686 + AT_rich Low_complexity Low_complexity 1 39 0 203 305 17 0 chr12 43434788 43434847 -100847642 + L2 LINE L2 3203 3262 -10 192 77 0 0 chr12 43434850 43434876 -100847613 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 229 256 0 70 chr12 43436050 43436136 -100846353 - L2 LINE L2 -8 3264 3185 2113 124 3 0 chr12 43436408 43436691 -100845798 - AluSq SINE Alu -29 284 1 219 319 92 34 chr12 43436955 43437247 -100845242 - L2 LINE L2 -660 2654 2346 1786 107 76 17 chr12 43439441 43439731 -100842758 - L1PA13 LINE L1 0 6163 5857 225 191 21 21 chr12 43440150 43440197 -100842292 + L2 LINE L2 3247 3293 -20 201 304 43 14 chr12 43441256 43441325 -100841164 + L2 LINE L2 2685 2755 -559 21 36 0 0 chr12 43441762 43441790 -100840699 + AT_rich Low_complexity Low_complexity 1 28 0 2242 123 0 0 chr12 43442953 43443254 -100839235 - AluSq SINE Alu -9 304 4 255 367 9 28 chr12 43444551 43444660 -100837829 + MIR SINE MIR 15 121 -141 226 297 0 16 chr12 43445420 43445484 -100837005 + L2 LINE L2 3249 3311 -2 25 51 0 0 chr12 43445778 43445817 -100836672 + AT_rich Low_complexity Low_complexity 1 39 0 2196 117 0 3 chr12 43446074 43446372 -100836117 + AluSq SINE Alu 1 297 -16 248 102 20 0 chr12 43450179 43450228 -100832261 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 270 301 74 44 chr12 43451393 43451622 -100830867 - L2 LINE L2 -3 3310 3075 1226 125 0 0 chr12 43452286 43452454 -100830035 + AluSg/x SINE Alu 129 296 -14 2517 59 3 0 chr12 43453080 43453387 -100829102 + AluY SINE Alu 2 309 -2 191 95 32 32 chr12 43453776 43453839 -100828650 + T-rich Low_complexity Low_complexity 3 65 0 239 236 111 0 chr12 43453843 43453915 -100828574 - MLT1J2 LTR MaLR -118 332 253 1837 31 0 0 chr12 43453936 43454158 -100828331 - L1PA4 LINE L1 -8 6147 5926 364 268 58 20 chr12 43454162 43454285 -100828204 - MLT1I LTR MaLR -236 173 47 54 40 0 0 chr12 43454937 43455012 -100827477 + AT_rich Low_complexity Low_complexity 1 75 0 23 33 0 0 chr12 43455135 43455165 -100827324 + AT_rich Low_complexity Low_complexity 1 30 0 2254 80 7 10 chr12 43455431 43455730 -100826759 - AluSp SINE Alu -15 298 1 310 158 66 0 chr12 43455943 43456019 -100826470 - L1MA7 LINE L1 -1 6290 6210 508 330 28 28 chr12 43456098 43456316 -100826173 - MIR SINE MIR -33 229 12 321 200 0 14 chr12 43456575 43456645 -100825844 - MER116 DNA Mariner -9 71 3 340 250 250 7 chr12 43457658 43457802 -100824687 - MIR SINE MIR 0 262 84 700 315 21 8 chr12 43457824 43458062 -100824427 - MIR SINE MIR -15 247 7 310 243 14 14 chr12 43458610 43458680 -100823809 + L2 LINE L2 3242 3311 -2 2318 112 0 0 chr12 43461585 43461890 -100820599 - AluSx SINE Alu -7 305 1 180 53 79 0 chr12 43462229 43462267 -100820222 + (CA)n Simple_repeat Simple_repeat 1 41 0 414 275 42 8 chr12 43462894 43463014 -100819475 + L3b LINE CR1 1225 1348 -235 192 411 53 20 chr12 43465224 43465375 -100817114 + L2 LINE L2 3107 3262 -10 410 296 56 0 chr12 43465609 43465717 -100816772 - MLT1L LTR MaLR -203 412 299 485 331 79 6 chr12 43465963 43466190 -100816299 - MIR SINE MIR -6 256 16 38 89 0 0 chr12 43466415 43466516 -100815973 + AT_rich Low_complexity Low_complexity 1 101 0 383 286 85 35 chr12 43467897 43468096 -100814393 + MIR SINE MIR 52 260 -2 198 327 20 59 chr12 43468150 43468251 -100814238 + MIR SINE MIR 36 132 -76 342 153 0 0 chr12 43468989 43469048 -100813441 + CT-rich Low_complexity Low_complexity 2 60 0 282 344 11 0 chr12 43469595 43469688 -100812801 + L3 LINE CR1 1434 1527 -50 219 333 144 35 chr12 43469813 43470014 -100812475 + MIR SINE MIR 34 256 -6 920 294 83 30 chr12 43470223 43470739 -100811750 + L2 LINE L2 2762 3301 -12 1038 190 4 66 chr12 43472406 43472439 -100810050 + MER20 DNA MER1_type 6 39 -180 1422 128 0 53 chr12 43472439 43472682 -100809807 - MER30 DNA MER1_type 0 230 1 1038 190 4 66 chr12 43472682 43472874 -100809615 + MER20 DNA MER1_type 39 217 -2 224 243 128 53 chr12 43473479 43473592 -100808897 + MIR SINE MIR 33 151 -111 194 379 24 40 chr12 43473725 43473849 -100808640 - MIR3 SINE MIR -83 125 4 24 53 0 0 chr12 43474046 43474084 -100808405 + AT_rich Low_complexity Low_complexity 1 38 0 249 158 0 0 chr12 43474221 43474259 -100808230 - Alu SINE Alu -15 151 114 2024 146 0 0 chr12 43474719 43475028 -100807461 + AluY SINE Alu 1 309 -2 21 57 0 0 chr12 43477727 43477762 -100804727 + AT_rich Low_complexity Low_complexity 1 35 0 235 255 262 21 chr12 43477798 43477943 -100804546 + MIR SINE MIR 83 262 0 204 97 0 0 chr12 43478597 43478628 -100803861 + (TG)n Simple_repeat Simple_repeat 1 31 0 217 319 166 19 chr12 43479002 43479159 -100803330 + L2 LINE L2 2559 2738 -576 338 300 36 7 chr12 43479562 43479702 -100802787 + MIR SINE MIR 119 262 0 192 77 0 0 chr12 43479778 43479804 -100802685 + (GGAA)n Simple_repeat Simple_repeat 4 29 0 459 272 68 6 chr12 43479853 43480015 -100802474 - MIR SINE MIR -71 191 20 244 286 52 0 chr12 43480261 43480338 -100802151 - L2 LINE L2 -4 3309 3229 278 179 9 104 chr12 43481511 43481617 -100800872 - L1MC4 LINE L1 -33 8009 7914 824 157 15 71 chr12 43481628 43481802 -100800687 + L1MC4 LINE L1 7361 7524 -518 1565 216 47 18 chr12 43481802 43482187 -100800302 - MSTD LTR MaLR 0 396 1 824 157 15 71 chr12 43482187 43482209 -100800280 + L1MC4 LINE L1 7524 7546 -496 422 316 58 10 chr12 43482426 43482632 -100799857 - LTR33 LTR ERVL -8 513 298 205 236 28 28 chr12 43483027 43483099 -100799390 + GA-rich Low_complexity Low_complexity 4 75 0 186 208 0 57 chr12 43483642 43483695 -100798794 + MIR SINE MIR 8 57 -205 561 178 0 35 chr12 43485597 43485771 -100796718 + (TA)n Simple_repeat Simple_repeat 1 168 0 304 221 0 87 chr12 43485785 43485889 -100796600 + L1MC4 LINE L1 6614 6708 -1334 200 326 67 34 chr12 43485997 43486086 -100796403 + L2 LINE L2 3158 3249 -23 1412 195 85 3 chr12 43487113 43487431 -100795058 + MER2 DNA MER2_type 1 344 0 5360 170 58 3 chr12 43487530 43489251 -100793238 + L1PA16 LINE L1 4333 6149 -17 1819 86 135 0 chr12 43489792 43490059 -100792430 + AluSp SINE Alu 1 303 0 501 167 9 0 chr12 43491939 43492053 -100790436 + CT-rich Low_complexity Low_complexity 1 115 0 224 329 40 54 chr12 43492449 43492598 -100789891 - L2 LINE L2 -1 3271 3125 1404 212 140 14 chr12 43492869 43493284 -100789205 - MLT1C LTR MaLR 0 467 1 205 189 0 0 chr12 43493502 43493539 -100788950 + (CATA)n Simple_repeat Simple_repeat 2 38 0 234 189 198 3 chr12 43493851 43493932 -100788557 + MIR SINE MIR 56 152 -56 1579 200 0 23 chr12 43494061 43494228 -100788261 - AluJb SINE Alu -19 293 135 180 0 0 0 chr12 43494228 43494248 -100788241 + (TA)n Simple_repeat Simple_repeat 2 21 0 1579 200 0 23 chr12 43494248 43494380 -100788109 - AluJb SINE Alu -177 135 1 265 364 37 25 chr12 43495087 43495249 -100787240 + MIR3 SINE MIR 6 169 -39 592 235 113 113 chr12 43495413 43495724 -100786765 - MLT1J LTR MaLR -200 311 1 556 239 39 17 chr12 43495734 43495914 -100786575 + HAL1 LINE L1 2001 2184 -323 2224 124 0 0 chr12 43495987 43496285 -100786204 + AluSx SINE Alu 1 298 -14 3172 138 11 27 chr12 43496294 43496854 -100785635 + L1MA5A LINE L1 5741 6291 -6 5410 127 6 11 chr12 43496872 43497728 -100784761 - L1PA15-16 LINE L1 -3876 2973 2122 22 0 0 0 chr12 43497810 43497832 -100784657 + AT_rich Low_complexity Low_complexity 1 22 0 318 381 84 44 chr12 43498043 43498494 -100783995 - L2 LINE L2 -341 2973 2505 284 133 78 11 chr12 43498494 43498584 -100783905 + (TA)n Simple_repeat Simple_repeat 2 97 0 2148 93 0 39 chr12 43499542 43499852 -100782637 + AluSq SINE Alu 1 298 -15 271 395 88 29 chr12 43500656 43500894 -100781595 - L2 LINE L2 0 3272 3021 2008 137 34 0 chr12 43504377 43504670 -100777819 - AluSx SINE Alu -9 303 1 22 0 0 0 chr12 43505143 43505165 -100777324 + AT_rich Low_complexity Low_complexity 1 22 0 1858 135 50 33 chr12 43505603 43505965 -100776524 - THE1C LTR MaLR -7 368 1 2654 81 0 0 chr12 43506325 43506673 -100775816 - L1PA7 LINE L1 -4 6150 5803 246 347 132 7 chr12 43507034 43507178 -100775311 - MIR SINE MIR -75 187 26 325 323 169 33 chr12 43507799 43508167 -100774322 - MLT1J2 LTR MaLR -1 449 32 21 0 0 0 chr12 43508306 43508327 -100774162 + AT_rich Low_complexity Low_complexity 1 21 0 284 351 26 13 chr12 43509669 43509820 -100772669 + MIR SINE MIR 3 155 -107 272 312 14 65 chr12 43510010 43510172 -100772317 + MER5A DNA MER1_type 17 170 -8 431 204 154 43 chr12 43510507 43510669 -100771820 - MIR SINE MIR -1 261 82 2023 138 7 0 chr12 43510995 43511292 -100771197 + AluSx SINE Alu 13 311 -1 212 335 77 32 chr12 43511448 43511603 -100770886 + L2 LINE L2 3084 3245 -68 217 261 0 0 chr12 43511780 43511826 -100770663 + (TATG)n Simple_repeat Simple_repeat 1 46 0 497 320 96 25 chr12 43511982 43512348 -100770141 - L2 LINE L2 -704 2610 2219 272 250 0 0 chr12 43512787 43512839 -100769650 + MIR SINE MIR 40 91 -171 2399 92 0 3 chr12 43513363 43513668 -100768821 + AluSc SINE Alu 1 304 -5 2193 133 75 2 chr12 43513927 43514326 -100768163 - MSTA LTR MaLR 0 428 1 517 279 57 88 chr12 43514382 43514644 -100767845 - MIR SINE MIR -2 260 7 202 372 12 12 chr12 43514743 43514829 -100767660 - MIR SINE MIR -104 104 19 189 321 0 0 chr12 43515249 43515302 -100767187 + L2 LINE L2 3261 3313 0 201 405 33 20 chr12 43515671 43515824 -100766665 - L2 LINE L2 0 3272 3118 443 266 32 0 chr12 43516088 43516182 -100766307 + MER81 DNA DNA 18 114 0 205 220 40 0 chr12 43516537 43516587 -100765902 + MIR SINE MIR 87 138 -70 1006 240 88 47 chr12 43517290 43517778 -100764711 - L1MC5 LINE L1 -436 7525 7018 2058 116 0 3 chr12 43518675 43518985 -100763504 + AluSg SINE Alu 1 309 0 258 192 27 55 chr12 43524681 43524754 -100757735 - MIR SINE MIR -37 225 155 921 227 163 57 chr12 43527326 43527713 -100754776 + LTR16A LTR ERVL 18 445 -5 34 24 0 0 chr12 43528101 43528142 -100754347 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr12 43528185 43528217 -100754272 + AT_rich Low_complexity Low_complexity 1 32 0 207 0 0 0 chr12 43529418 43529441 -100753048 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 218 257 235 7 chr12 43530650 43530786 -100751703 + MIR SINE MIR 95 261 -1 568 253 74 25 chr12 43530796 43530958 -100751531 - MIR SINE MIR -71 191 22 193 294 0 0 chr12 43531022 43531073 -100751416 + L2 LINE L2 3263 3313 0 193 353 29 73 chr12 43531447 43531651 -100750838 + L2 LINE L2 2916 3110 -162 260 281 0 34 chr12 43531986 43532075 -100750414 - HsTC2 DNA Tc2 -1807 91 6 216 363 39 49 chr12 43532652 43532754 -100749735 - L2 LINE L2 -63 3209 3109 25 31 0 0 chr12 43532845 43532877 -100749612 + AT_rich Low_complexity Low_complexity 1 32 0 1620 182 7 26 chr12 43533814 43534116 -100748373 + AluJb SINE Alu 3 298 -14 184 98 24 24 chr12 43534120 43534161 -100748328 + (TA)n Simple_repeat Simple_repeat 1 41 0 2208 118 3 0 chr12 43536861 43537167 -100745322 + AluSg SINE Alu 1 307 -3 531 202 0 0 chr12 43538721 43538815 -100743674 - MER5A DNA MER1_type -83 106 13 613 270 46 29 chr12 43540437 43540611 -100741878 + MER5B DNA MER1_type 1 177 -1 408 240 32 40 chr12 43540703 43540828 -100741661 - L2 LINE L2 -37 3276 3153 190 234 0 21 chr12 43540839 43540886 -100741603 + L2 LINE L2 3266 3311 -2 * 770 278 49 37 chr12 43540884 43541129 -100741360 - MIR SINE MIR 0 262 15 729 274 208 13 chr12 43545045 43545588 -100736901 - L2 LINE L2 0 3313 2651 288 293 152 0 chr12 43547428 43547527 -100734962 + L2 LINE L2 3200 3313 0 185 387 92 7 chr12 43547818 43547960 -100734529 - L3 LINE CR1 -1 1576 1423 264 317 85 105 chr12 43548879 43549242 -100733247 + L2 LINE L2 2917 3272 0 297 256 149 50 chr12 43549576 43549697 -100732792 - MER94 DNA DNA 0 134 2 23 78 0 0 chr12 43550859 43550910 -100731579 + AT_rich Low_complexity Low_complexity 1 51 0 438 285 11 39 chr12 43551345 43551524 -100730965 - L1ME LINE L1 -427 5694 5521 1248 184 18 0 chr12 43551595 43551813 -100730676 + AluJo SINE Alu 55 276 -36 180 314 40 63 chr12 43552797 43552972 -100729517 + L2 LINE L2 2818 2988 -284 408 20 0 0 chr12 43553487 43553536 -100728953 + (CA)n Simple_repeat Simple_repeat 2 50 0 254 261 125 11 chr12 43554494 43554582 -100727907 - MIR SINE MIR -77 131 34 353 241 103 0 chr12 43555960 43556076 -100726413 + MIR SINE MIR 105 232 -30 475 305 183 11 chr12 43556391 43556676 -100725813 - L2 LINE L2 -10 3303 2970 532 228 31 0 chr12 43556747 43556874 -100725615 - L1MA10 LINE L1 -2 6332 6202 * 1793 176 9 3 chr12 43556864 43557205 -100725284 + L1 LINE L1 4273 4615 -1531 651 251 60 6 chr12 43557205 43557372 -100725117 - MIR SINE MIR -65 197 22 889 310 99 65 chr12 43557380 43558068 -100724421 - L2 LINE L2 -357 2957 2247 345 314 195 6 chr12 43558183 43558352 -100724137 + MIR SINE MIR 32 232 -30 183 129 0 0 chr12 43558358 43558389 -100724100 + (TA)n Simple_repeat Simple_repeat 1 31 0 247 305 37 0 chr12 43559177 43559259 -100723230 - HAL1 LINE L1 -1978 529 445 260 0 0 54 chr12 43561054 43561091 -100721398 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 225 178 0 0 chr12 43562064 43562109 -100720380 + (TG)n Simple_repeat Simple_repeat 1 45 0 457 302 146 3 chr12 43563296 43563611 -100718878 - L1ME3A LINE L1 -316 5923 5564 3502 148 72 44 chr12 43563712 43564545 -100717944 - LTR1 LTR ERV1 0 785 1 787 291 89 25 chr12 43564652 43565504 -100716985 - L1ME3A LINE L1 -842 5373 4467 789 256 135 0 chr12 43565507 43565737 -100716752 + MIR SINE MIR 2 262 0 388 266 100 36 chr12 43565776 43566033 -100716456 - L1ME3A LINE L1 -3450 2765 2467 2355 99 0 0 chr12 43566033 43566337 -100716152 - AluSg SINE Alu -6 304 1 388 266 100 36 chr12 43566337 43566518 -100715971 - L1ME3A LINE L1 -3748 2467 2299 371 312 56 49 chr12 43566596 43566862 -100715627 - L1ME3A LINE L1 -4070 2326 2059 2326 75 9 6 chr12 43567150 43567471 -100715018 - L1PA10 LINE L1 -2 6166 5845 494 279 12 17 chr12 43567471 43567643 -100714846 - L1ME3A LINE L1 -4675 1721 1551 791 272 115 81 chr12 43567736 43568410 -100714079 - L1ME3A LINE L1 -5016 1189 480 1712 211 20 28 chr12 43568410 43568809 -100713680 + MSTD LTR MaLR 1 396 0 791 272 115 81 chr12 43568809 43568958 -100713531 - L1ME3A LINE L1 -5725 480 338 3453 151 30 7 chr12 43569023 43569625 -100712864 + L1MC1 LINE L1 5717 6332 -1 23 68 0 0 chr12 43570954 43570998 -100711491 + AT_rich Low_complexity Low_complexity 1 44 0 37 52 0 0 chr12 43571525 43571583 -100710906 + AT_rich Low_complexity Low_complexity 1 58 0 193 146 42 0 chr12 43571953 43572001 -100710488 + (TA)n Simple_repeat Simple_repeat 2 51 0 24 0 0 0 chr12 43572269 43572293 -100710196 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr12 43573272 43573295 -100709194 + AT_rich Low_complexity Low_complexity 1 23 0 324 0 0 0 chr12 43573730 43573766 -100708723 + (TTG)n Simple_repeat Simple_repeat 2 37 0 2106 104 0 21 chr12 43573769 43574056 -100708433 - AluY SINE Alu -30 281 1 2431 66 0 17 chr12 43574276 43574577 -100707912 - AluY SINE Alu -15 296 1 435 251 2 23 chr12 43575446 43575560 -100706929 + MIR SINE MIR 1 108 -100 327 327 26 9 chr12 43576184 43576297 -100706192 + MIR SINE MIR 48 162 -100 1061 342 49 24 chr12 43576320 43576867 -100705622 - MLT1K LTR MaLR -26 562 2 414 250 67 19 chr12 43577694 43577798 -100704691 + MIR SINE MIR 46 154 -108 216 304 6 88 chr12 43578022 43578193 -100704296 + L2 LINE L2 2807 2963 -309 324 0 0 0 chr12 43578334 43578370 -100704119 + (TG)n Simple_repeat Simple_repeat 1 36 0 483 401 30 19 chr12 43578373 43578742 -100703747 - L2 LINE L2 -1652 1662 1290 658 331 53 39 chr12 43578765 43579103 -100703386 - L2 LINE L2 -1910 1404 1062 252 356 119 10 chr12 43579488 43579690 -100702799 - L2 LINE L2 -2279 1035 812 2213 113 3 7 chr12 43580159 43580469 -100702020 + AluSx SINE Alu 1 309 -3 1393 183 29 76 chr12 43583847 43584230 -100698259 - MLT1A1 LTR MaLR 0 365 1 291 321 36 18 chr12 43584373 43584485 -100698004 - L2 LINE L2 -9 3304 3191 238 125 25 0 chr12 43586060 43586100 -100696389 - U2 snRNA snRNA -147 41 1 1216 194 92 49 chr12 43586249 43586533 -100695956 + AluJo SINE Alu 1 296 -6 273 57 0 0 chr12 43587619 43587654 -100694835 + (TG)n Simple_repeat Simple_repeat 2 36 0 2396 71 0 34 chr12 43587740 43588062 -100694427 + AluY SINE Alu 1 311 0 241 188 21 0 chr12 43588214 43588262 -100694227 + GA-rich Low_complexity Low_complexity 1 49 0 421 262 176 41 chr12 43588771 43588992 -100693497 + MIR SINE MIR 12 262 0 1791 166 63 12 chr12 43589098 43589429 -100693060 - MER7A DNA MER2_type 0 346 1 2318 91 7 3 chr12 43589680 43589989 -100692500 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr12 43590921 43590950 -100691539 + AT_rich Low_complexity Low_complexity 1 29 0 276 77 0 0 chr12 43591979 43592018 -100690471 + (CA)n Simple_repeat Simple_repeat 1 39 0 2444 107 39 8 chr12 43592517 43592880 -100689609 + THE1C LTR MaLR 1 374 -1 215 132 26 0 chr12 43593164 43593202 -100689287 + (CA)n Simple_repeat Simple_repeat 2 40 0 213 261 0 0 chr12 43594121 43594167 -100688322 + (TAA)n Simple_repeat Simple_repeat 2 47 0 520 215 25 0 chr12 43594176 43594297 -100688192 - MIR SINE MIR -17 245 122 216 129 29 14 chr12 43594371 43594441 -100688048 + (TA)n Simple_repeat Simple_repeat 1 71 0 30 69 0 0 chr12 43595641 43595699 -100686790 + AT_rich Low_complexity Low_complexity 1 58 0 234 353 67 8 chr12 43601323 43601442 -100681047 - L2 LINE L2 -4 3268 3143 25 31 0 0 chr12 43601604 43601636 -100680853 + AT_rich Low_complexity Low_complexity 1 32 0 2134 99 4 0 chr12 43601636 43601908 -100680581 - AluSg SINE Alu -33 277 5 1966 155 0 0 chr12 43601912 43602230 -100680259 - AluSx SINE Alu 0 318 1 1034 111 0 0 chr12 43602230 43602365 -100680124 - AluSq/x SINE Alu -178 135 1 201 158 0 0 chr12 43603932 43603970 -100678519 + (TA)n Simple_repeat Simple_repeat 1 38 0 360 0 0 0 chr12 43604146 43604186 -100678303 + (TC)n Simple_repeat Simple_repeat 1 40 0 299 64 0 21 chr12 43604185 43604232 -100678257 + (CA)n Simple_repeat Simple_repeat 1 46 0 * 344 167 93 148 chr12 43607767 43607831 -100674658 - MLT1A2 LTR MaLR -4 370 313 715 173 24 8 chr12 43607831 43607958 -100674531 - FLAM_C SINE Alu -3 130 2 344 167 93 148 chr12 43607958 43608001 -100674488 - MLT1A2 LTR MaLR -61 313 269 403 127 0 0 chr12 43608005 43608060 -100674429 - MLT1B LTR MaLR -332 58 4 34 0 0 0 chr12 43608080 43608114 -100674375 + AT_rich Low_complexity Low_complexity 1 34 0 249 297 59 10 chr12 43610077 43610178 -100672311 + LTR23 LTR ERV1 332 437 0 199 337 98 42 chr12 43610593 43610857 -100671632 + L2 LINE L2 2569 2847 -467 1401 200 0 36 chr12 43610948 43611223 -100671266 - AluJo SINE Alu -23 289 25 37 106 0 0 chr12 43611292 43611434 -100671055 + AT_rich Low_complexity Low_complexity 1 142 0 476 247 178 6 chr12 43612544 43612718 -100669771 + MIR SINE MIR 59 262 0 228 296 24 59 chr12 43614020 43614189 -100668300 - L2 LINE L2 -580 2734 2572 468 195 169 7 chr12 43614236 43614390 -100668099 + MER53 DNA DNA 9 187 -2 317 307 96 44 chr12 43614392 43614662 -100667827 - L2 LINE L2 -779 2535 2252 571 214 194 20 chr12 43614974 43615170 -100667319 - MER46C DNA MER2_type -107 231 2 310 255 22 32 chr12 43615218 43615368 -100667121 - L1MC/D LINE L1 -354 5826 5714 * 1045 192 65 0 chr12 43615366 43615580 -100666909 - L1PB4 LINE L1 -77 6079 5852 519 318 40 20 chr12 43615578 43615776 -100666713 - L1MC/D LINE L1 -2098 5710 5509 * 1322 220 92 19 chr12 43615957 43616426 -100666063 - MER69 DNA AcHobo -11 2515 2013 1209 279 130 43 chr12 43616440 43616851 -100665638 - MER69 DNA AcHobo -1971 555 90 2511 53 0 13 chr12 43616851 43617155 -100665334 + AluY SINE Alu 1 300 -11 1209 279 130 43 chr12 43617155 43617252 -100665237 - MER69 DNA AcHobo -2436 90 3 406 312 241 0 chr12 43617255 43617537 -100664952 + LTR33A LTR ERVL 173 522 -1 1161 141 47 13 chr12 43618141 43618375 -100664114 + L1MA8 LINE L1 6043 6284 -7 974 162 20 25 chr12 43618425 43618623 -100663866 - L1PB2 LINE L1 -14 6137 5941 630 298 56 25 chr12 43619078 43619434 -100663055 - L1ME4a LINE L1 -244 5877 5511 187 188 16 16 chr12 43619841 43619905 -100662584 + (TA)n Simple_repeat Simple_repeat 2 65 0 237 337 139 0 chr12 43619918 43620019 -100662470 + MIR3 SINE MIR 3 117 -91 228 182 23 0 chr12 43624017 43624061 -100658428 + L2 LINE L2 3226 3270 -2 1026 152 53 86 chr12 43624946 43625190 -100657299 + MER46A DNA MER2_type 1 236 0 3085 278 73 37 chr12 43625513 43628059 -100654430 - L1ME4a LINE L1 -289 5766 3135 969 212 42 10 chr12 43628066 43628362 -100654127 - MSTD LTR MaLR -12 384 1 2196 223 34 22 chr12 43628362 43628864 -100653625 - MSTD-int LTR MaLR 0 1735 1228 531 204 0 0 chr12 43628869 43628967 -100653522 - MSTC LTR MaLR -330 98 1 916 271 161 13 chr12 43629034 43629344 -100653145 - MLT1G3 LTR MaLR -34 496 141 1747 189 72 18 chr12 43629353 43629895 -100652594 - L1MB7 LINE L1 -3 6181 5550 522 222 24 0 chr12 43629891 43630017 -100652472 - L1MB7 LINE L1 -1314 4832 4704 * 1207 216 14 7 chr12 43630022 43630305 -100652184 - L1MB7 LINE L1 -3270 2876 2592 240 213 21 11 chr12 43630312 43630406 -100652083 - L1ME4a LINE L1 -2981 3099 3005 436 278 81 7 chr12 43630422 43630637 -100651852 - MER106B DNA MER1_type -1 1058 1 999 259 53 47 chr12 43630653 43630689 -100651800 - L1ME4a LINE L1 -3108 2972 2938 2012 140 0 3 chr12 43630689 43630982 -100651507 - AluSx SINE Alu -4 308 17 999 259 53 47 chr12 43630982 43631454 -100651035 - L1ME4a LINE L1 -3142 2938 2461 887 289 156 24 chr12 43631479 43632035 -100650454 + L1ME4a LINE L1 5255 5900 -221 467 304 70 0 chr12 43632239 43632469 -100650020 - L1ME4a LINE L1 -3631 2449 2204 256 315 84 0 chr12 43632915 43633093 -100649396 - L1ME4a LINE L1 -4576 1685 1493 * 531 200 39 45 chr12 43633089 43633140 -100649349 - L1MA10 LINE L1 -3 6331 6281 1564 253 85 36 chr12 43633140 43633836 -100648653 - L1ME1 LINE L1 -44 6191 5448 3015 115 52 52 chr12 43633836 43634331 -100648158 - MER1A DNA MER1_type 0 529 35 400 239 9 0 chr12 43634349 43634458 -100648031 - L1ME1 LINE L1 -2396 5458 5349 * 680 219 25 74 chr12 43634457 43634699 -100647790 - L1ME1 LINE L1 -6130 266 37 582 259 48 76 chr12 43634812 43635357 -100647132 - L1ME LINE L1 -4893 1368 805 3302 171 32 5 chr12 43635410 43635977 -100646512 - MER7C DNA MER2_type -20 582 1 21 36 0 0 chr12 43636272 43636300 -100646189 + AT_rich Low_complexity Low_complexity 1 28 0 265 277 0 0 chr12 43636304 43636369 -100646120 - LTR67 LTR ERVL -491 66 2 503 265 65 126 chr12 43637218 43637305 -100645184 + MER102a DNA MER1_type 41 132 -1285 1352 150 26 136 chr12 43637305 43637651 -100644838 - AluYb8 SINE Alu 0 308 1 503 265 65 126 chr12 43637651 43637872 -100644617 + MER102a DNA MER1_type 132 330 0 230 244 0 0 chr12 43639574 43639619 -100642870 + polypyrimidine Low_complexity Low_complexity 2 46 0 335 306 32 16 chr12 43640791 43640915 -100641574 - L2 LINE L2 0 3313 3188 489 335 28 24 chr12 43640956 43641204 -100641285 - MIR SINE MIR -12 250 2 1500 139 27 4 chr12 43641240 43641499 -100640990 + L1PB4 LINE L1 5874 6138 -18 328 301 99 58 chr12 43642048 43642493 -100639996 - L1M4 LINE L1 -2713 3433 2971 2352 146 55 5 chr12 43642737 43643141 -100639348 - MSTB LTR MaLR -2 424 1 401 333 45 0 chr12 43643389 43643455 -100639034 + L1MC4a LINE L1 5707 5769 -2039 207 0 0 0 chr12 43643455 43643478 -100639011 + (TA)n Simple_repeat Simple_repeat 2 24 0 401 333 45 0 chr12 43643478 43643612 -100638877 + L1MC4a LINE L1 5769 5916 -1892 592 299 91 17 chr12 43643636 43643877 -100638612 + MIR SINE MIR 2 260 -2 2071 129 114 33 chr12 43643961 43644356 -100638133 + MSTA LTR MaLR 2 428 0 1371 166 0 4 chr12 43644359 43644594 -100637895 + MSTA-int LTR MaLR 4 237 -1343 355 247 13 13 chr12 43644775 43644852 -100637637 + L2 LINE L2 3196 3272 0 496 245 168 7 chr12 43644969 43645124 -100637365 + MER5A DNA MER1_type 10 189 0 661 254 74 109 chr12 43645281 43645876 -100636613 + Charlie7 DNA MER1_type 5 578 -2034 * 1910 226 102 18 chr12 43645869 43646538 -100635951 + Charlie7 DNA MER1_type 1764 2488 -124 310 259 65 14 chr12 43646565 43646704 -100635785 - MER104 DNA Tc2 0 180 35 570 274 48 27 chr12 43646728 43646914 -100635575 - MLT1J LTR MaLR -6 505 316 406 271 19 9 chr12 43647002 43647109 -100635380 - MLT1J LTR MaLR -330 181 74 2387 114 16 25 chr12 43647196 43647563 -100634926 + THE1B LTR MaLR 1 364 0 11735 88 13 3 chr12 43647563 43649121 -100633368 + THE1B-int LTR MaLR 1 1574 -6 2291 120 28 19 chr12 43649135 43649494 -100632995 + THE1B LTR MaLR 1 362 -2 1133 241 73 21 chr12 43649611 43649993 -100632496 - LTR16A1 LTR ERVL 0 457 56 188 261 65 0 chr12 43650096 43650142 -100632347 - L2 LINE L2 -2 3270 3222 36 53 0 0 chr12 43650495 43650552 -100631937 + AT_rich Low_complexity Low_complexity 1 57 0 1734 178 18 0 chr12 43650552 43650833 -100631656 - AluJo SINE Alu -25 287 2 385 315 118 66 chr12 43650871 43651532 -100630957 + L2 LINE L2 2521 3232 -40 376 268 106 21 chr12 43651584 43651726 -100630763 - MIR SINE MIR -13 249 96 2274 96 7 0 chr12 43651758 43652061 -100630428 + AluSq SINE Alu 1 305 -8 245 211 138 37 chr12 43652061 43652161 -100630328 - L2 LINE L2 -7 3306 3193 181 314 12 58 chr12 43652422 43652508 -100629981 + L2 LINE L2 3230 3311 -2 200 178 0 44 chr12 43652787 43652832 -100629657 + GA-rich Low_complexity Low_complexity 1 43 0 2015 129 3 3 chr12 43654974 43655287 -100627202 + AluSx SINE Alu 1 312 0 6794 222 44 28 chr12 43655319 43657414 -100625075 + L1ME1 LINE L1 3037 5165 -981 878 180 39 3 chr12 43657420 43657673 -100624816 - MLT1A1 LTR MaLR -2 363 19 2948 227 75 14 chr12 43657686 43658611 -100623878 + L1ME1 LINE L1 5177 6166 0 2234 86 3 55 chr12 43658971 43659297 -100623192 + AluY SINE Alu 1 309 -2 800 264 53 9 chr12 43659461 43659688 -100622801 - MIR SINE MIR -14 248 12 188 131 0 197 chr12 43659945 43660006 -100622483 - L2 LINE L2 0 3313 3265 1612 190 27 35 chr12 43661280 43661648 -100620841 + MLT1A1 LTR MaLR 1 365 0 203 53 26 53 chr12 43662752 43662790 -100619699 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 234 286 0 0 chr12 43662806 43662869 -100619620 - MLT1L LTR MaLR 0 615 553 2494 175 35 2 chr12 43662872 43663323 -100619166 + MLT1C LTR MaLR 2 467 0 181 213 0 21 chr12 43663616 43663663 -100618826 + L2 LINE L2 3217 3262 -51 352 327 32 32 chr12 43663893 43664049 -100618440 - L2 LINE L2 -18 3295 3140 964 227 14 0 chr12 43664249 43664465 -100618024 + L1 LINE L1 4121 4339 -1807 24 0 0 0 chr12 43664583 43664607 -100617882 + AT_rich Low_complexity Low_complexity 1 24 0 5592 169 5 12 chr12 43664637 43666446 -100616043 + L1PA16 LINE L1 4364 6163 -3 324 233 89 133 chr12 43666812 43667246 -100615243 + MLT1H1 LTR MaLR 4 458 -91 27 0 0 0 chr12 43667304 43667331 -100615158 + AT_rich Low_complexity Low_complexity 1 27 0 278 315 27 0 chr12 43667331 43667404 -100615085 - MIR3 SINE MIR -53 155 81 21 0 0 0 chr12 43668190 43668211 -100614278 + AT_rich Low_complexity Low_complexity 1 21 0 281 277 84 12 chr12 43668515 43668598 -100613891 - L2 LINE L2 -31 3241 3153 316 282 115 13 chr12 43668632 43668788 -100613701 + MIR SINE MIR 82 253 -9 184 222 0 0 chr12 43669365 43669401 -100613088 - L2 LINE L2 -10 3303 3268 215 319 145 36 chr12 43669754 43670002 -100612487 + L2 LINE L2 2817 3091 -181 261 0 0 0 chr12 43670190 43670219 -100612270 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 40429 40 22 1 chr12 43670226 43676251 -100606238 - L1PA2 LINE L1 -2 6153 4 311 250 94 6 chr12 43676358 43676538 -100605951 - L1ME4a LINE L1 -3 6118 5923 25 65 0 0 chr12 43676722 43676768 -100605721 + AT_rich Low_complexity Low_complexity 1 46 0 1691 191 15 55 chr12 43676849 43677252 -100605237 + MLT1B LTR MaLR 2 388 -2 301 255 166 35 chr12 43677393 43677538 -100604951 - L1ME4a LINE L1 -4 6117 5954 2004 189 73 15 chr12 43677538 43677992 -100604497 + MLT2B1 LTR ERVL 1 480 -40 228 212 24 12 chr12 43677992 43678077 -100604412 + (TA)n Simple_repeat Simple_repeat 2 87 0 317 306 82 8 chr12 43678103 43678237 -100604252 - L1ME4a LINE L1 -178 5943 5800 695 173 17 22 chr12 43678361 43678540 -100603949 + GA-rich Low_complexity Low_complexity 2 179 0 341 143 0 0 chr12 43678540 43678589 -100603900 + (GGGA)n Simple_repeat Simple_repeat 3 51 0 860 126 25 10 chr12 43678589 43678787 -100603702 + GA-rich Low_complexity Low_complexity 1 201 0 286 292 18 13 chr12 43678916 43679064 -100603425 - MLT1J2 LTR MaLR -251 260 76 2296 85 3 0 chr12 43680546 43680840 -100601649 + AluSc SINE Alu 1 295 -14 608 251 31 58 chr12 43681681 43681872 -100600617 - MIR SINE MIR -13 249 64 791 217 50 0 chr12 43682839 43683037 -100599452 - MER58A DNA MER1_type -16 208 1 184 378 27 0 chr12 43683047 43683121 -100599368 + MIR SINE MIR 55 130 -132 206 319 43 11 chr12 43683282 43683376 -100599113 - MIR SINE MIR -13 249 153 27 29 0 0 chr12 43684295 43684329 -100598160 + AT_rich Low_complexity Low_complexity 1 34 0 282 116 0 0 chr12 43685641 43685684 -100596805 + (A)n Simple_repeat Simple_repeat 1 43 0 1974 144 21 39 chr12 43686173 43686555 -100595934 - THE1C LTR MaLR 0 375 1 402 263 32 55 chr12 43686691 43686993 -100595496 - MLT1I LTR MaLR -3 406 81 1093 209 13 8 chr12 43687274 43687513 -100594976 - MLT1D LTR MaLR -3 502 263 642 217 68 41 chr12 43687745 43687966 -100594523 - MLT1D LTR MaLR -273 232 6 26 30 0 0 chr12 43688243 43688276 -100594213 + AT_rich Low_complexity Low_complexity 1 33 0 1046 155 61 0 chr12 43688279 43688460 -100594029 - L1PA16 LINE L1 -11 6155 5964 342 0 0 0 chr12 43689023 43689061 -100593428 + (TA)n Simple_repeat Simple_repeat 2 39 0 438 69 0 0 chr12 43689114 43689172 -100593317 + (TA)n Simple_repeat Simple_repeat 2 59 0 1124 328 52 17 chr12 43691019 43691485 -100591004 - L2 LINE L2 0 3313 2832 496 198 0 0 chr12 43691490 43691576 -100590913 + 5S rRNA rRNA 5 90 -31 276 233 52 0 chr12 43691580 43691696 -100590793 + L1M4 LINE L1 4303 4424 -1722 382 239 45 0 chr12 43691696 43691784 -100590705 - L2 LINE L2 -475 2839 2748 2335 110 0 0 chr12 43692007 43692317 -100590172 - AluSg SINE Alu 0 310 1 3346 264 163 33 chr12 43692438 43693795 -100588694 - L2 LINE L2 -655 2659 1127 2165 78 3 0 chr12 43695557 43695860 -100586629 + AluY SINE Alu 1 304 0 819 264 19 9 chr12 43695934 43696146 -100586343 - MIR SINE MIR -17 245 32 250 388 12 38 chr12 43697034 43697194 -100585295 - MIR SINE MIR -71 191 36 180 308 134 12 chr12 43697390 43697562 -100584927 - MIR SINE MIR -1 261 69 6399 75 3 5 chr12 43697673 43698634 -100583855 + L1PA8A LINE L1 5154 6113 -18 29 0 0 0 chr12 43698635 43698664 -100583825 + AT_rich Low_complexity Low_complexity 1 29 0 40471 38 22 1 chr12 43699115 43705141 -100577348 - L1PA2 LINE L1 0 6155 1 40319 38 21 1 chr12 43705263 43711304 -100571185 + L1PA2 LINE L1 7 6155 0 382 219 252 0 chr12 43712519 43712638 -100569851 - MLT2B1 LTR ERVL 0 520 371 2152 149 27 65 chr12 43712638 43713081 -100569408 + MSTB LTR MaLR 1 426 0 777 215 14 108 chr12 43713154 43713442 -100569047 - MLT2B1 LTR ERVL -253 267 7 216 384 46 33 chr12 43713977 43714284 -100568205 + L2 LINE L2 1145 1455 -1859 237 344 22 50 chr12 43717179 43717359 -100565130 + MIR SINE MIR 20 194 -68 5690 120 23 8 chr12 43717461 43718576 -100563913 + L1PB2 LINE L1 5016 6148 -3 32 67 0 0 chr12 43718582 43718642 -100563847 + AT_rich Low_complexity Low_complexity 1 60 0 3415 182 106 46 chr12 43719255 43719642 -100562847 - MER21B LTR ERV1 -1 862 500 2056 126 0 7 chr12 43719642 43719954 -100562535 + AluSx SINE Alu 1 310 0 3415 182 106 46 chr12 43719954 43720377 -100562112 - MER21B LTR ERV1 -363 500 2 524 340 68 8 chr12 43720651 43720901 -100561588 - L3 LINE CR1 -3 1574 1310 36 77 0 0 chr12 43721339 43721417 -100561072 + AT_rich Low_complexity Low_complexity 1 78 0 191 250 19 0 chr12 43721493 43721545 -100560944 - MIR SINE MIR -120 142 90 1600 174 33 0 chr12 43722401 43722700 -100559789 + L1MCa LINE L1 20 328 -6098 3411 153 72 55 chr12 43722810 43722857 -100559632 + L1MCa LINE L1 656 701 -5725 989 155 17 17 chr12 43722857 43723038 -100559451 + L1PB3 LINE L1 5973 6153 -1 3411 153 72 55 chr12 43723038 43723783 -100558706 + L1MCa LINE L1 701 1461 -4965 1855 139 168 24 chr12 43724777 43725151 -100557338 + MSTA LTR MaLR 1 428 0 324 309 145 19 chr12 43726897 43727214 -100555275 + L1ME1 LINE L1 5530 5886 -280 1864 218 62 17 chr12 43727265 43727747 -100554742 + L1MB3 LINE L1 4747 5250 -896 2794 127 145 2 chr12 43727748 43728211 -100554278 + MER1A DNA MER1_type 1 529 0 4798 147 46 27 chr12 43728221 43728460 -100554029 + L1MB3 LINE L1 5254 5487 -696 2183 121 0 16 chr12 43728460 43728765 -100553724 + AluSx SINE Alu 1 300 -12 4798 147 46 27 chr12 43728765 43729438 -100553051 + L1MB3 LINE L1 5487 6183 0 394 215 13 0 chr12 43729565 43729644 -100552845 + L2 LINE L2 3234 3313 0 462 366 6 6 chr12 43730109 43730284 -100552205 + MIR3 SINE MIR 31 205 -3 2261 147 12 31 chr12 43730284 43730451 -100552038 + HSMAR2 DNA Mariner 5 174 -1128 2144 103 0 0 chr12 43730451 43730791 -100551698 + AluY SINE Alu 1 340 0 2261 147 12 31 chr12 43730791 43731043 -100551446 + HSMAR2 DNA Mariner 174 417 -885 1670 124 4 0 chr12 43731052 43731301 -100551188 + HSMAR2 DNA Mariner 991 1240 -62 24 77 0 0 chr12 43733047 43733099 -100549390 + AT_rich Low_complexity Low_complexity 1 52 0 363 73 0 0 chr12 43735137 43735192 -100547297 + (TG)n Simple_repeat Simple_repeat 2 56 0 789 213 7 9 chr12 43736251 43736417 -100546072 + L1P4 LINE L1 5511 5675 -486 2808 157 73 58 chr12 43736622 43737280 -100545209 - L1MB1 LINE L1 -44 6124 5457 1604 235 31 49 chr12 43737302 43737665 -100544824 - L1ME1 LINE L1 -5 6161 5809 1996 106 3 18 chr12 43737665 43737980 -100544509 - AluSx SINE Alu 0 313 3 1604 235 31 49 chr12 43737980 43738164 -100544325 - L1ME1 LINE L1 -357 5809 5623 1275 268 70 39 chr12 43738160 43738593 -100543896 - L1MEc LINE L1 -4756 1640 1222 * 426 39 0 0 chr12 43738593 43738645 -100543844 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 2227 87 0 0 chr12 43738647 43738923 -100543566 - AluSc SINE Alu -31 278 3 1275 268 70 39 chr12 43738923 43739325 -100543164 - L1MEc LINE L1 -5174 1222 776 239 323 118 0 chr12 43739332 43739425 -100543064 + L2 LINE L2 3163 3266 -6 5586 128 16 0 chr12 43739510 43740176 -100542313 - L1PA16 LINE L1 -9 6157 5488 2137 117 3 3 chr12 43740176 43740467 -100542022 - AluSx SINE Alu -21 291 1 5586 128 16 0 chr12 43740467 43740806 -100541683 - L1PA16 LINE L1 -678 5488 5156 1503 197 10 33 chr12 43740838 43741143 -100541346 - AluJo SINE Alu -14 298 1 397 394 0 18 chr12 43742468 43742638 -100539851 - L2 LINE L2 -219 3053 2887 306 0 0 0 chr12 43743045 43743079 -100539410 + (CA)n Simple_repeat Simple_repeat 2 35 0 37 86 0 0 chr12 43744715 43744808 -100537681 + AT_rich Low_complexity Low_complexity 1 93 0 251 303 0 0 chr12 43745418 43745494 -100536995 - L1MC4 LINE L1 -554 7488 7413 749 261 135 80 chr12 43745558 43745818 -100536671 - L1MC4 LINE L1 -733 7228 6984 2389 53 20 0 chr12 43745818 43745993 -100536496 - AluY SINE Alu -1 310 125 180 0 0 0 chr12 43745993 43746013 -100536476 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2389 53 20 0 chr12 43746013 43746141 -100536348 - AluY SINE Alu -186 125 1 749 261 135 80 chr12 43746141 43746857 -100535632 - L1MC4 LINE L1 -977 6984 6204 305 314 9 0 chr12 43746878 43746983 -100535506 - L1MC4 LINE L1 -1996 5812 5707 328 277 99 0 chr12 43746992 43747093 -100535396 - MIR SINE MIR -73 189 79 23 0 0 0 chr12 43748052 43748075 -100534414 + AT_rich Low_complexity Low_complexity 1 23 0 252 0 0 0 chr12 43748615 43748643 -100533846 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 2118 100 3 48 chr12 43748732 43749043 -100533446 + AluSq SINE Alu 1 297 -16 259 325 44 18 chr12 43749153 43749267 -100533222 - MER5A DNA MER1_type -1 188 72 355 148 33 5 chr12 43749738 43749859 -100532630 - MER53 DNA DNA -3 186 1 1022 213 41 0 chr12 43750381 43750578 -100531911 - MER20 DNA MER1_type -13 206 2 1414 143 112 56 chr12 43750665 43750952 -100531537 - AluJo SINE Alu -9 303 1 31 44 0 0 chr12 43750970 43751015 -100531474 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr12 43751284 43751306 -100531183 + AT_rich Low_complexity Low_complexity 1 22 0 2106 113 75 42 chr12 43751964 43752113 -100530376 + MER51A LTR ERV1 1 144 -490 219 36 0 0 chr12 43752113 43752141 -100530348 + (CA)n Simple_repeat Simple_repeat 1 28 0 2106 113 75 42 chr12 43752141 43752546 -100529943 + MER51A LTR ERV1 144 634 0 610 261 0 0 chr12 43752561 43752722 -100529767 - L1M4 LINE L1 -1015 5131 4971 271 175 70 0 chr12 43752737 43752794 -100529695 + L1M4 LINE L1 5154 5214 -932 805 219 93 36 chr12 43752798 43753077 -100529412 - L1ME3A LINE L1 -273 5880 5586 489 228 105 19 chr12 43753078 43753240 -100529249 + MER63A DNA MER1_type 27 202 -8 879 245 48 14 chr12 43753282 43753576 -100528913 - L1ME3A LINE L1 -560 5585 5282 662 303 73 36 chr12 43753582 43753785 -100528704 - L1ME3A LINE L1 -872 5257 5063 1463 199 0 15 chr12 43753785 43754052 -100528437 + AluJb SINE Alu 1 263 -49 662 303 73 36 chr12 43754052 43754406 -100528083 - L1ME3A LINE L1 -1066 5063 4679 1105 201 55 26 chr12 43754422 43754886 -100527603 + MER39 LTR ERV1 1 516 -26 2734 257 86 54 chr12 43754909 43754962 -100527527 - L1ME3A LINE L1 -1479 4650 4600 253 61 20 20 chr12 43754962 43755011 -100527478 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2734 257 86 54 chr12 43755011 43757004 -100525485 - L1ME3A LINE L1 -1529 4600 2540 3193 137 14 39 chr12 43757016 43757580 -100524909 + MER44D DNA MER2_type 1 605 0 472 313 50 71 chr12 43757580 43757951 -100524538 - L1ME3A LINE L1 -4594 1716 1352 579 292 30 23 chr12 43757958 43758259 -100524230 - L1ME3A LINE L1 -4922 1197 895 317 310 71 82 chr12 43758317 43758598 -100523891 - L1ME3A LINE L1 -5290 829 552 231 304 64 24 chr12 43760134 43760259 -100522230 + L1ME LINE L1 5712 5841 -280 323 323 0 10 chr12 43760578 43760677 -100521812 - L2 LINE L2 0 3313 3216 4681 126 50 70 chr12 43760813 43761696 -100520793 - THE1C-int LTR MaLR -712 868 4 1976 127 67 28 chr12 43761699 43762060 -100520429 - THE1C LTR MaLR 0 375 1 606 258 45 64 chr12 43762074 43762767 -100519722 - L1MC4 LINE L1 -1200 6608 5958 8417 19 1 1 chr12 43763036 43764033 -100518456 + L1P LINE L1 4330 5326 -820 791 185 26 31 chr12 43764040 43764267 -100518222 + Charlie1 DNA MER1_type 2536 2761 0 548 284 27 31 chr12 43764296 43764518 -100517971 + MARNA DNA Mariner 357 577 -9 29 28 0 0 chr12 43765550 43765586 -100516903 + AT_rich Low_complexity Low_complexity 1 36 0 495 87 0 0 chr12 43765688 43765757 -100516732 + (TTCC)n Simple_repeat Simple_repeat 2 70 0 421 280 37 0 chr12 43765757 43765864 -100516625 - L2 LINE L2 -5 3267 3157 298 326 28 14 chr12 43766002 43766146 -100516343 - HAL1 LINE L1 -144 2363 2218 195 354 69 42 chr12 43766220 43766364 -100516125 + MER5A DNA MER1_type 18 165 -24 622 276 130 70 chr12 43766649 43767149 -100515340 - LTR67 LTR ERVL -7 550 21 1650 180 43 53 chr12 43767497 43767638 -100514851 - MLT1B LTR MaLR 0 390 249 2098 148 64 12 chr12 43767638 43768044 -100514445 - MSTA LTR MaLR -1 427 1 1650 180 43 53 chr12 43768044 43768296 -100514193 - MLT1B LTR MaLR -141 249 1 248 261 206 30 chr12 43768541 43768706 -100513783 + MLT1K LTR MaLR 267 460 -128 23 68 0 0 chr12 43769023 43769067 -100513422 + AT_rich Low_complexity Low_complexity 1 44 0 2865 177 82 2 chr12 43769099 43769314 -100513175 + MER6A DNA MER2_type 1 197 -668 285 75 0 0 chr12 43769314 43769354 -100513135 + (TG)n Simple_repeat Simple_repeat 2 41 0 2865 177 82 2 chr12 43769354 43769698 -100512791 + MER6A DNA MER2_type 197 605 0 343 172 0 0 chr12 43770842 43770900 -100511589 - L1PA15-16 LINE L1 -6791 58 1 5711 188 42 21 chr12 43770906 43772644 -100509845 + L1PA15-16 LINE L1 135 1680 -5169 9700 26 2 0 chr12 43772744 43773950 -100508539 - L1P LINE L1 -1295 4851 3644 6738 21 0 0 chr12 43773950 43774752 -100507737 + L1PA4 LINE L1 5367 6168 0 2395 161 25 10 chr12 43774759 43775238 -100507251 - Charlie1 DNA MER1_type -221 2540 2055 602 245 125 5 chr12 43775215 43775399 -100507090 - Charlie1 DNA MER1_type -2555 206 1 * 326 370 103 0 chr12 43775889 43776054 -100506435 - MIR3 SINE MIR -10 198 17 189 0 0 0 chr12 43776923 43776944 -100505545 + (T)n Simple_repeat Simple_repeat 1 21 0 780 219 81 45 chr12 43778168 43778521 -100503968 + MLT1G1 LTR MaLR 92 524 -71 733 302 61 18 chr12 43778528 43778806 -100503683 + ERVL LTR ERVL 4858 5147 -617 1645 168 4 15 chr12 43779986 43780260 -100502229 + AluJb SINE Alu 1 271 -41 589 208 17 17 chr12 43780592 43780770 -100501719 - Charlie2 DNA MER1_type -35 2827 2650 234 158 0 0 chr12 43780854 43780892 -100501597 + HsTC2 DNA Tc2 1301 1338 -560 1503 163 0 74 chr12 43780912 43781195 -100501294 + AluJo SINE Alu 14 275 -37 279 133 0 0 chr12 43781196 43781241 -100501248 + (GGGA)n Simple_repeat Simple_repeat 3 47 0 234 158 0 0 chr12 43781440 43781478 -100501011 + HsTC2 DNA Tc2 1301 1338 -560 1412 173 0 74 chr12 43781498 43781781 -100500708 + AluJo SINE Alu 14 275 -37 279 133 0 0 chr12 43781782 43781827 -100500662 + (GGGA)n Simple_repeat Simple_repeat 3 47 0 321 218 48 40 chr12 43781879 43782003 -100500486 + HsTC2 DNA Tc2 1729 1853 -45 2153 156 11 0 chr12 43782080 43782459 -100500030 - L1MB3 LINE L1 0 6183 5801 728 162 52 113 chr12 43782524 43782637 -100499852 - L1MB3 LINE L1 -387 5796 5702 2098 98 30 0 chr12 43782637 43782933 -100499556 + AluSx SINE Alu 1 305 -7 728 162 52 113 chr12 43782933 43783048 -100499441 - L1MB3 LINE L1 -481 5702 5582 769 209 109 31 chr12 43783048 43783406 -100499083 - Charlie2 DNA MER1_type -289 2573 2188 628 74 21 0 chr12 43783417 43783512 -100498977 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 627 250 11 0 chr12 43784297 43784485 -100498004 - Charlie2 DNA MER1_type -757 2105 1916 379 231 51 77 chr12 43784541 43784697 -100497792 - Charlie2 DNA MER1_type -2457 325 174 231 250 42 0 chr12 43785558 43785630 -100496859 - MLT1J LTR MaLR -8 503 429 384 246 144 46 chr12 43785660 43785855 -100496634 - MLT1J LTR MaLR -148 363 150 21 0 0 0 chr12 43786020 43786041 -100496448 + AT_rich Low_complexity Low_complexity 1 21 0 2215 82 34 0 chr12 43786125 43786419 -100496070 + AluSq SINE Alu 1 304 -9 33 43 0 0 chr12 43787184 43787231 -100495258 + AT_rich Low_complexity Low_complexity 1 47 0 2469 251 57 36 chr12 43787383 43788723 -100493766 + L1ME3A LINE L1 4798 6165 -5 499 208 188 14 chr12 43788730 43788874 -100493615 + MIR SINE MIR 20 188 -74 192 212 0 0 chr12 43791429 43791495 -100490994 + (TTA)n Simple_repeat Simple_repeat 1 66 0 1959 183 59 24 chr12 43793316 43793775 -100488714 + MLT1D LTR MaLR 3 477 -28 4443 79 8 2 chr12 43793777 43794355 -100488134 + L1PA10 LINE L1 5567 6151 -17 261 0 0 0 chr12 43794355 43794384 -100488105 + (TTAAA)n Simple_repeat Simple_repeat 2 30 0 4443 79 8 2 chr12 43794384 43794403 -100488086 + L1PA10 LINE L1 6151 6168 0 11770 194 23 51 chr12 43794559 43798082 -100484407 + L1PA16 LINE L1 1689 4982 -1887 13752 102 2 2 chr12 43798082 43800897 -100481592 - L1PA8 LINE L1 -2 6170 3358 11770 194 23 51 chr12 43800897 43802725 -100479764 + L1PA16 LINE L1 4982 6860 -9 21 57 0 0 chr12 43802970 43803005 -100479484 + AT_rich Low_complexity Low_complexity 1 35 0 1517 213 41 78 chr12 43803062 43803688 -100478801 + MLT1E2 LTR MaLR 65 617 -9 198 0 0 0 chr12 43804113 43804135 -100478354 + (T)n Simple_repeat Simple_repeat 1 22 0 293 367 65 10 chr12 43804146 43804345 -100478144 + MIR SINE MIR 53 262 0 24 32 0 0 chr12 43804515 43804546 -100477943 + AT_rich Low_complexity Low_complexity 1 31 0 1035 118 106 0 chr12 43804860 43805021 -100477468 + L1PB4 LINE L1 5973 6150 -6 872 296 76 20 chr12 43805228 43805674 -100476815 - LTR33 LTR ERVL -48 473 3 2630 23 3 0 chr12 43806199 43806499 -100475990 + AluY SINE Alu 1 301 -10 2720 230 48 32 chr12 43806819 43807880 -100474609 + L1ME3 LINE L1 5081 6156 -6 235 297 31 16 chr12 43809192 43809256 -100473233 - MIR3 SINE MIR -135 73 9 306 277 21 21 chr12 43809875 43809969 -100472520 + MLT2E LTR ERVL 39 132 -496 13224 48 3 1 chr12 43810059 43812476 -100470013 - L1PA5 LINE L1 0 6154 3727 2564 231 47 10 chr12 43812702 43813322 -100469167 + MER82 DNA MER2_type 11 653 0 268 360 23 0 chr12 43813327 43813413 -100469076 - MIR SINE MIR -94 114 27 265 366 56 21 chr12 43815522 43815664 -100466825 + L2 LINE L2 3125 3271 -1 238 266 0 31 chr12 43816697 43816761 -100465728 + C-rich Low_complexity Low_complexity 6 67 0 261 109 0 0 chr12 43816767 43816813 -100465676 + (CA)n Simple_repeat Simple_repeat 1 46 0 1274 220 62 15 chr12 43817365 43817765 -100464724 - LTR52 LTR ERVL 0 421 3 528 205 8 16 chr12 43817767 43817889 -100464600 - LTR52-int LTR ERVL 0 3556 3436 2354 183 20 41 chr12 43817935 43818443 -100464046 - MLT1D LTR MaLR -3 502 6 1312 216 7 30 chr12 43818448 43818744 -100463745 - LTR52-int LTR ERVL -191 3365 3077 2841 96 22 2 chr12 43818744 43819213 -100463276 - MER1A DNA MER1_type 0 529 2 9776 173 45 43 chr12 43819217 43820107 -100462382 - LTR52-int LTR ERVL -475 3081 2194 864 190 18 12 chr12 43820107 43820270 -100462219 - FAM SINE Alu -11 164 1 2583 68 0 3 chr12 43820279 43820589 -100461900 - AluY SINE Alu -2 309 1 9776 173 45 43 chr12 43820589 43821058 -100461431 - LTR52-int LTR ERVL -1369 2187 1720 2464 37 40 3 chr12 43821058 43821358 -100461131 - AluY SINE Alu 0 311 1 9776 173 45 43 chr12 43821358 43823068 -100459421 - LTR52-int LTR ERVL -1836 1720 1 1308 233 35 25 chr12 43823072 43823476 -100459013 - LTR52 LTR ERVL -5 416 9 261 176 77 66 chr12 43825238 43825329 -100457160 - L2 LINE L2 -2 3311 3220 918 195 4 105 chr12 43825413 43825690 -100456799 - L1MC4a LINE L1 -847 6961 6732 9984 216 25 33 chr12 43825700 43826813 -100455676 - L1MA6 LINE L1 0 6300 5179 2345 134 3 24 chr12 43826813 43827185 -100455304 - THE1B LTR MaLR 0 364 1 9984 216 25 33 chr12 43827185 43827210 -100455279 - L1MA6 LINE L1 -1121 5179 5155 2241 113 3 3 chr12 43827210 43827511 -100454978 + AluSp SINE Alu 1 301 -12 9984 216 25 33 chr12 43827511 43830323 -100452166 - L1MA6 LINE L1 -1145 5155 2379 1224 226 40 0 chr12 43830333 43830487 -100452002 - AluJb SINE Alu -25 287 118 207 69 0 0 chr12 43830487 43830516 -100451973 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1224 226 40 0 chr12 43830516 43830613 -100451876 - AluJb SINE Alu -194 118 26 6808 130 20 15 chr12 43830618 43830774 -100451715 - L1M4 LINE L1 -3828 2554 2400 1540 179 67 50 chr12 43830774 43831131 -100451358 + MLT1A1 LTR MaLR 1 363 -2 6808 130 20 15 chr12 43831131 43832254 -100450235 - L1M4 LINE L1 -3982 2400 1269 1565 161 123 0 chr12 43832252 43832544 -100449945 - L1M4 LINE L1 -6056 328 1 * 294 227 235 0 chr12 43832528 43832647 -100449842 - L1MD3 LINE L1 -1211 6784 6638 * 1864 139 60 38 chr12 43832648 43833015 -100449474 - THE1C LTR MaLR 0 375 1 6055 148 55 19 chr12 43833015 43834129 -100448360 - THE1C-int LTR MaLR 0 1580 427 1293 234 49 67 chr12 43834309 43834947 -100447542 - L1MC4a LINE L1 -1225 6583 5958 186 104 0 104 chr12 43834970 43835018 -100447471 - L2 LINE L2 -78 3235 3193 4509 92 29 8 chr12 43835234 43835897 -100446592 - L1PA11 LINE L1 -2 6172 5496 4691 132 21 7 chr12 43835897 43836825 -100445664 + L1P4 LINE L1 4520 5460 -714 618 288 126 43 chr12 43836836 43837162 -100445327 - L2 LINE L2 -15 3298 2946 370 239 131 54 chr12 43837469 43837621 -100444868 + L1ME4a LINE L1 5881 6057 -64 2092 136 0 0 chr12 43837621 43837957 -100444532 - AluSc SINE Alu 0 309 1 370 239 131 54 chr12 43837957 43838026 -100444463 + L1ME4a LINE L1 6057 6119 -2 1586 174 24 40 chr12 43838668 43839047 -100443442 + MLT1A2 LTR MaLR 2 374 0 210 322 11 11 chr12 43839244 43839331 -100443158 - L2 LINE L2 -2 3311 3225 752 150 16 8 chr12 43839503 43839630 -100442859 - AluJb SINE Alu -181 131 4 2586 164 25 50 chr12 43839633 43840189 -100442300 - LTR64 LTR ERVK -16 542 1 241 363 90 52 chr12 43840997 43841440 -100441049 - L2 LINE L2 -2411 903 444 709 338 153 13 chr12 43841549 43842093 -100440396 + L2 LINE L2 1080 1759 -1555 198 103 0 0 chr12 43842093 43842122 -100440367 + (CA)n Simple_repeat Simple_repeat 2 30 0 709 338 153 13 chr12 43842122 43842329 -100440160 + L2 LINE L2 1759 1936 -1378 769 345 134 27 chr12 43842377 43843326 -100439163 + L2 LINE L2 2212 3271 -1 181 206 0 0 chr12 43843848 43843882 -100438607 + L2 LINE L2 3267 3300 -13 238 250 25 0 chr12 43844075 43844155 -100438334 - L1ME3 LINE L1 -3 6159 6078 189 233 274 0 chr12 43845261 43845334 -100437155 - L2 LINE L2 0 3313 3221 498 333 27 37 chr12 43845376 43845670 -100436819 - ERVL LTR ERVL -3984 1780 1490 1547 309 78 17 chr12 43845884 43846589 -100435900 + ERVL LTR ERVL 4166 4913 -851 735 166 18 71 chr12 43846856 43847025 -100435464 + AluJo SINE Alu 1 160 -152 282 87 0 0 chr12 43847246 43847292 -100435197 + (TA)n Simple_repeat Simple_repeat 1 46 0 336 217 267 6 chr12 43847570 43847731 -100434758 + LTR50 LTR ERVL 5 207 -588 267 103 0 0 chr12 43850675 43850714 -100431775 + (GAATG)n Simple_repeat Simple_repeat 2 40 0 185 337 12 12 chr12 43850723 43850806 -100431683 - L3 LINE CR1 -190 1387 1305 409 324 62 18 chr12 43850983 43851208 -100431281 - L3 LINE CR1 -259 1318 1084 2028 109 0 11 chr12 43851616 43851918 -100430571 + AluSx SINE Alu 12 310 0 216 0 0 0 chr12 43852531 43852555 -100429934 + (A)n Simple_repeat Simple_repeat 1 24 0 196 196 250 36 chr12 43853177 43853233 -100429256 - L3 LINE CR1 -480 1097 1030 595 305 64 13 chr12 43854012 43854340 -100428149 + L2 LINE L2 2657 3003 -310 590 192 98 49 chr12 43854348 43854533 -100427956 - MER119 DNA MER1_type -1 582 382 1798 138 11 11 chr12 43854533 43854862 -100427627 + AluSx SINE Alu 3 331 0 590 192 98 49 chr12 43854862 43854899 -100427590 - MER119 DNA MER1_type -201 382 348 928 233 77 39 chr12 43854927 43855366 -100427123 - MLT1C LTR MaLR -11 494 26 752 390 15 85 chr12 43855409 43855737 -100426752 - MER119 DNA MER1_type -232 351 47 524 323 167 4 chr12 43855765 43856028 -100426461 + L2 LINE L2 3008 3313 0 1048 115 49 11 chr12 43856143 43856326 -100426163 - MER30B DNA MER1_type 0 190 1 594 274 39 99 chr12 43857583 43857999 -100424490 + HAL1 LINE L1 946 1336 -1171 26 50 0 0 chr12 43858506 43858546 -100423943 + AT_rich Low_complexity Low_complexity 1 40 0 322 247 82 40 chr12 43858600 43858886 -100423603 + HAL1b LINE L1 757 2439 -68 2348 114 0 0 chr12 43859292 43859591 -100422898 + AluSq SINE Alu 1 299 -14 22 0 0 0 chr12 43862439 43862461 -100420028 + AT_rich Low_complexity Low_complexity 1 22 0 228 127 270 0 chr12 43862564 43862627 -100419862 + MADE1 DNA Mariner 1 80 0 2468 49 0 0 chr12 43862647 43862934 -100419555 - AluY SINE Alu -24 287 1 2140 115 0 3 chr12 43866519 43866807 -100415682 - AluSx SINE Alu -25 287 1 1562 200 55 18 chr12 43866807 43867192 -100415297 + MER31B LTR ERV1 43 441 -25 467 105 21 95 chr12 43867785 43867840 -100414649 + L1ME LINE L1 5546 5593 -573 2056 96 7 33 chr12 43867840 43868141 -100414348 + AluY SINE Alu 1 293 -18 467 105 21 95 chr12 43868141 43868180 -100414309 + L1ME LINE L1 5593 5633 -533 1115 249 36 74 chr12 43868187 43868522 -100413967 - MLT1D LTR MaLR 0 505 196 1982 107 3 13 chr12 43868522 43868822 -100413667 - L1PA12 LINE L1 -14 6154 5858 1115 249 36 74 chr12 43868822 43869011 -100413478 - MLT1D LTR MaLR -309 196 1 2157 196 26 4 chr12 43869011 43869466 -100413023 + L1ME1 LINE L1 5645 6109 -57 590 147 32 0 chr12 43869467 43869562 -100412927 + AluY SINE Alu 1 98 -213 728 117 0 0 chr12 43869571 43869682 -100412807 + MER57B LTR ERV1 324 434 0 890 242 19 5 chr12 43869867 43870078 -100412411 + MER20 DNA MER1_type 4 217 -2 312 306 238 0 chr12 43872254 43872460 -100410029 + LTR50 LTR ERVL 1 255 -540 1087 219 140 0 chr12 43872975 43873326 -100409163 + Charlie5 DNA MER1_type 2223 2622 0 604 316 144 22 chr12 43874165 43874485 -100408004 - L3 LINE CR1 -1 1576 1218 404 331 61 0 chr12 43874763 43874911 -100407578 - L2 LINE L2 -5 3308 3152 447 301 61 12 chr12 43874972 43875135 -100407354 - L3 LINE CR1 -357 1220 1050 2025 140 3 0 chr12 43875238 43875523 -100406966 + AluSx SINE Alu 1 286 -26 1916 136 7 34 chr12 43876168 43876463 -100406026 + AluSx SINE Alu 1 287 -25 21 57 0 0 chr12 43877156 43877191 -100405298 + AT_rich Low_complexity Low_complexity 1 35 0 1065 99 0 28 chr12 43877266 43877448 -100405041 + (GGAA)n Simple_repeat Simple_repeat 2 178 0 1688 202 78 51 chr12 43877767 43878253 -100404236 + MLT1D LTR MaLR 7 505 0 474 332 68 15 chr12 43879562 43879767 -100402722 - MIR SINE MIR 0 262 47 207 0 0 0 chr12 43879771 43879794 -100402695 + (A)n Simple_repeat Simple_repeat 1 23 0 1444 168 46 13 chr12 43880191 43880495 -100401994 + MER46B DNA MER2_type 48 236 0 264 137 0 0 chr12 43880622 43880673 -100401816 + (T)n Simple_repeat Simple_repeat 1 51 0 6521 7 0 0 chr12 43880674 43881434 -100401055 - L1HS LINE L1 0 6155 5396 289 178 11 44 chr12 43881594 43881684 -100400805 + (TA)n Simple_repeat Simple_repeat 2 88 0 1173 258 123 41 chr12 43881708 43882296 -100400193 + L2 LINE L2 2702 3313 0 1262 225 73 40 chr12 43882373 43882821 -100399668 - MLT1C LTR MaLR 0 467 1 590 276 81 17 chr12 43884324 43884498 -100397991 + MIR SINE MIR 5 189 -73 25 0 0 0 chr12 43884565 43884590 -100397899 + AT_rich Low_complexity Low_complexity 1 25 0 310 264 19 9 chr12 43884909 43885015 -100397474 - L1ME LINE L1 -335 5835 5729 1739 170 7 20 chr12 43885408 43885708 -100396781 - AluSx SINE Alu -14 298 3 364 268 16 8 chr12 43885768 43885891 -100396598 + CT-rich Low_complexity Low_complexity 6 129 0 225 0 0 0 chr12 43885993 43886018 -100396471 + (TTG)n Simple_repeat Simple_repeat 2 26 0 208 358 83 8 chr12 43886028 43886148 -100396341 + L2 LINE L2 3184 3312 -1 31 76 0 0 chr12 43886149 43886215 -100396274 + AT_rich Low_complexity Low_complexity 1 66 0 189 329 43 0 chr12 43886816 43886886 -100395603 - MIR3 SINE MIR -12 196 124 606 329 28 19 chr12 43886963 43887179 -100395310 - MIR SINE MIR -32 230 13 277 301 62 9 chr12 43887585 43887698 -100394791 + LTR67 LTR ERVL 422 540 -17 1259 162 102 0 chr12 43889692 43889957 -100392532 - L1MA5 LINE L1 0 6300 6009 2197 88 38 21 chr12 43890035 43890375 -100392114 - L1PB2 LINE L1 -6 6145 5800 207 0 0 0 chr12 43890433 43890456 -100392033 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 6897 65 2 7 chr12 43890501 43891784 -100390705 + L1PA7 LINE L1 4876 6154 0 2005 165 59 28 chr12 43891938 43892441 -100390048 - MLT2A2 LTR ERVL -11 543 5 3278 148 19 54 chr12 43892441 43893075 -100389414 + LTR9 LTR ERV1 1 612 0 21 36 0 0 chr12 43893163 43893191 -100389298 + AT_rich Low_complexity Low_complexity 1 28 0 300 289 24 0 chr12 43893353 43893436 -100389053 - L1M4 LINE L1 -2061 4085 4001 2250 125 0 0 chr12 43893461 43893766 -100388723 + AluSg SINE Alu 1 305 -5 837 237 39 5 chr12 43893884 43894091 -100388398 + MER58A DNA MER1_type 1 214 -10 705 237 88 5 chr12 43894131 43894325 -100388164 + MER63A DNA MER1_type 1 210 0 296 257 124 0 chr12 43894522 43894627 -100387862 - MIR SINE MIR -55 207 90 272 241 0 0 chr12 43895769 43895823 -100386666 + MLT1L LTR MaLR 323 376 -239 716 230 70 25 chr12 43895967 43896167 -100386322 + MIR SINE MIR 54 262 0 202 314 0 0 chr12 43896308 43896359 -100386130 - L2 LINE L2 -16 3297 3247 213 233 46 0 chr12 43898493 43898546 -100383943 + MIR SINE MIR 101 156 -106 2244 142 12 39 chr12 43898595 43898736 -100383753 - MER57A LTR ERV1 -3 400 257 2277 105 7 0 chr12 43898736 43899030 -100383459 + AluSg SINE Alu 1 296 -14 2244 142 12 39 chr12 43899030 43899298 -100383191 - MER57A LTR ERV1 -146 257 2 319 213 93 9 chr12 43899935 43900043 -100382446 + MER112 DNA MER1_type 143 259 -1 6089 93 21 6 chr12 43900561 43902325 -100380164 + L1PA11 LINE L1 4390 6168 -6 419 294 7 44 chr12 43902795 43902931 -100379558 + L2 LINE L2 3137 3267 -5 182 283 19 38 chr12 43903430 43903483 -100379006 + L2 LINE L2 3184 3235 -37 207 0 0 0 chr12 43904387 43904410 -100378079 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2126 132 0 0 chr12 43904412 43904699 -100377790 - AluSx SINE Alu -25 287 1 705 272 63 21 chr12 43904924 43905163 -100377326 + MIR SINE MIR 3 251 -11 546 130 43 0 chr12 43906123 43906238 -100376251 + L1MA8 LINE L1 5213 5332 -814 1970 141 3 7 chr12 43906238 43906536 -100375953 + AluJb SINE Alu 1 297 -15 32 0 0 0 chr12 43906536 43906568 -100375921 + AT_rich Low_complexity Low_complexity 1 32 0 27972 125 27 16 chr12 43906588 43912655 -100369834 + L1PA7 LINE L1 12 6146 -8 655 247 43 56 chr12 43912841 43913072 -100369417 + L2 LINE L2 3085 3312 -1 4670 137 47 36 chr12 43913073 43914033 -100368456 + L1MA8 LINE L1 5317 6286 -5 1703 165 25 0 chr12 43914043 43914328 -100368161 + AluJb SINE Alu 1 292 -20 21 0 0 0 chr12 43914853 43914874 -100367615 + AT_rich Low_complexity Low_complexity 1 21 0 1888 104 87 37 chr12 43915501 43915856 -100366633 - THE1C LTR MaLR -2 373 1 307 161 222 0 chr12 43916077 43916158 -100366331 - L2 LINE L2 -4 3309 3211 374 314 42 0 chr12 43916727 43916845 -100365644 + L3 LINE CR1 1416 1538 -39 224 193 126 126 chr12 43917539 43917583 -100364906 - MIR SINE MIR -70 192 149 2199 90 3 13 chr12 43917583 43917925 -100364564 - AluSq SINE Alu 0 313 1 224 193 126 126 chr12 43917925 43917999 -100364490 - MIR SINE MIR -112 150 74 493 205 0 43 chr12 43918479 43918596 -100363893 - MLT1H LTR MaLR -222 327 216 270 173 19 0 chr12 43918760 43918812 -100363677 - L2 LINE L2 -61 3252 3200 337 284 200 18 chr12 43918812 43919037 -100363452 - L1MC/D LINE L1 -2266 5519 5254 491 251 20 4 chr12 43919322 43919565 -100362924 - L1M4 LINE L1 -2181 3965 3683 847 305 114 22 chr12 43919723 43920375 -100362114 - L1M4 LINE L1 -2679 3467 2760 1897 135 6 68 chr12 43920406 43920732 -100361757 + AluJb SINE Alu 1 306 -6 235 256 85 24 chr12 43920955 43921037 -100361452 - MIR SINE MIR -8 254 168 * 396 297 67 30 chr12 43921013 43921178 -100361311 + L2 LINE L2 2557 2727 -587 285 287 32 11 chr12 43921205 43921299 -100361190 + MER5A DNA MER1_type 93 188 -1 33 56 0 0 chr12 43921352 43921406 -100361083 + AT_rich Low_complexity Low_complexity 1 54 0 444 270 121 5 chr12 43921570 43921786 -100360703 - L1MC4a LINE L1 -297 5824 5603 542 325 83 36 chr12 43921787 43922233 -100360256 - MLT1K LTR MaLR -1 587 121 394 323 61 22 chr12 43922312 43923074 -100359415 - L1MC4a LINE L1 -541 5580 4756 480 336 99 39 chr12 43923267 43923579 -100358910 + L2 LINE L2 2934 3264 -8 515 191 39 182 chr12 43923771 43924002 -100358487 + MIR SINE MIR 65 262 0 239 40 60 20 chr12 43924023 43924073 -100358416 + CT-rich Low_complexity Low_complexity 5 56 0 514 274 12 37 chr12 43925295 43925459 -100357030 - MIR SINE MIR -35 227 68 231 278 56 11 chr12 43925627 43925717 -100356772 + L2 LINE L2 1614 1707 -1607 797 274 77 24 chr12 43925792 43926131 -100356358 + LTR16A1 LTR ERVL 97 453 -4 2927 245 111 29 chr12 43926135 43926673 -100355816 + L2 LINE L2 1731 2223 -1091 2066 138 0 3 chr12 43926673 43926977 -100355512 + AluSg SINE Alu 1 303 -7 2927 245 111 29 chr12 43926977 43927376 -100355113 + L2 LINE L2 2223 2746 -568 541 236 236 5 chr12 43927376 43927579 -100354910 + MIR SINE MIR 1 250 -12 892 286 85 41 chr12 43927633 43928070 -100354419 + L2 LINE L2 2858 3313 0 337 355 104 33 chr12 43928072 43928618 -100353871 - L2 LINE L2 -664 2650 2066 2072 168 49 20 chr12 43929096 43929501 -100352988 - MER47B DNA MER2_type 0 418 2 359 317 63 21 chr12 43930444 43930586 -100351903 - L2 LINE L2 -2 3270 3123 185 306 207 0 chr12 43930659 43930770 -100351719 - L2 LINE L2 -1 3312 3179 514 284 135 56 chr12 43930857 43930884 -100351605 + L2 LINE L2 2833 2856 -457 1514 191 26 66 chr12 43930884 43931262 -100351227 - MLT1A1 LTR MaLR -2 363 1 514 284 135 56 chr12 43931262 43931590 -100350899 + L2 LINE L2 2856 3216 -97 787 271 54 22 chr12 43931606 43932126 -100350363 - L1ME LINE L1 -4899 1362 793 3537 234 111 12 chr12 43932132 43933632 -100348857 + L1ME2 LINE L1 3220 5098 -1066 447 19 0 0 chr12 43933632 43933684 -100348805 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 3537 234 111 12 chr12 43933684 43934495 -100347994 + L1ME2 LINE L1 5098 5828 -336 6276 136 18 20 chr12 43934495 43936063 -100346426 + L1MA3 LINE L1 4741 6305 0 540 204 50 33 chr12 43936125 43936306 -100346183 + L1ME3 LINE L1 5616 5799 -363 4918 157 56 28 chr12 43936313 43937764 -100344725 + L1MA7 LINE L1 4364 5876 -415 549 246 16 0 chr12 43937764 43937890 -100344599 + FLAM_A SINE Alu 2 129 -4 4918 157 56 28 chr12 43937890 43938308 -100344181 + L1MA7 LINE L1 5876 6281 -10 590 257 108 10 chr12 43938399 43938640 -100343849 + L1ME3 LINE L1 5907 6169 -1 1401 212 92 26 chr12 43938800 43939225 -100343264 - MLT1C LTR MaLR -7 460 8 2065 108 0 28 chr12 43939261 43939548 -100342941 + AluSx SINE Alu 1 279 -33 423 0 0 0 chr12 43939548 43939595 -100342894 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 221 354 44 62 chr12 43939708 43939982 -100342507 - L2 LINE L2 -360 2954 2686 417 208 0 0 chr12 43940254 43940331 -100342158 + MER5A DNA MER1_type 33 109 -80 277 226 235 20 chr12 43940256 43940358 -100342131 - MER5A DNA MER1_type -23 166 43 * 596 243 158 7 chr12 43941033 43941185 -100341304 - MER5A DNA MER1_type -6 183 9 23 33 0 0 chr12 43941355 43941385 -100341104 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr12 43942083 43942112 -100340377 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 43942741 43942762 -100339727 + AT_rich Low_complexity Low_complexity 1 21 0 324 287 79 18 chr12 43942834 43942998 -100339491 + MIR SINE MIR 36 209 -53 437 328 52 30 chr12 43944020 43944325 -100338164 + L2 LINE L2 2046 2357 -957 207 0 0 0 chr12 43944330 43944353 -100338136 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1276 147 15 10 chr12 43944356 43944554 -100337935 - AluJo SINE Alu -30 282 84 419 340 101 24 chr12 43944554 43944930 -100337559 + L2 LINE L2 2355 2759 -555 374 350 17 8 chr12 43945255 43945372 -100337117 + L2 LINE L2 3196 3313 0 2561 138 21 26 chr12 43945437 43945864 -100336625 + MSTB LTR MaLR 1 425 -1 242 218 55 0 chr12 43946313 43946368 -100336121 + L2 LINE L2 2997 3054 -218 2485 222 106 17 chr12 43946430 43947560 -100334929 - MER69 DNA AcHobo 0 2526 2 1824 211 17 6 chr12 43948576 43948937 -100333552 - MLT1A1 LTR MaLR 0 365 1 308 326 30 119 chr12 43948951 43949322 -100333167 - L2 LINE L2 0 3272 2935 612 260 89 40 chr12 43949338 43949783 -100332706 + LTR33 LTR ERVL 1 507 -14 1634 182 66 0 chr12 43949799 43950117 -100332372 + MER2 DNA MER2_type 7 345 0 334 385 14 14 chr12 43950151 43950299 -100332190 - L2 LINE L2 -450 2864 2717 428 339 63 58 chr12 43950315 43950953 -100331536 - L2 LINE L2 -1454 1860 1220 661 241 161 89 chr12 43951054 43951071 -100331418 + MLT1K LTR MaLR 199 213 -375 2553 104 10 31 chr12 43951071 43951454 -100331035 + THE1C LTR MaLR 1 375 0 661 241 161 89 chr12 43951454 43951565 -100330924 + MLT1K LTR MaLR 213 315 -273 2138 107 0 27 chr12 43951565 43951864 -100330625 + AluSq SINE Alu 1 291 -22 661 241 161 89 chr12 43951864 43952082 -100330407 + MLT1K LTR MaLR 315 571 -17 327 351 60 30 chr12 43952088 43952256 -100330233 - L2 LINE L2 -2081 1233 1061 28 0 0 0 chr12 43953142 43953170 -100329319 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr12 43953854 43953883 -100328606 + (A)n Simple_repeat Simple_repeat 1 29 0 180 228 70 18 chr12 43953997 43954054 -100328435 + MIR SINE MIR 190 249 -13 225 297 31 0 chr12 43955176 43955240 -100327249 + MIR SINE MIR 48 113 -149 220 123 0 70 chr12 43956243 43956300 -100326189 + (GAAAA)n Simple_repeat Simple_repeat 2 54 0 204 298 83 0 chr12 43958811 43958895 -100323594 - MIR SINE MIR -50 212 122 24 0 0 0 chr12 43958917 43958941 -100323548 + AT_rich Low_complexity Low_complexity 1 24 0 227 330 174 9 chr12 43958941 43959056 -100323433 - MIR SINE MIR -128 134 1 370 234 203 25 chr12 43959165 43959323 -100323166 + MIR SINE MIR 66 251 -11 1430 152 112 85 chr12 43960295 43960742 -100321747 + MLT1C LTR MaLR 5 463 -4 651 286 130 42 chr12 43961848 43962372 -100320117 + L1MEc LINE L1 1881 2450 -3946 258 290 48 0 chr12 43962405 43962529 -100319960 + L1MEc LINE L1 2477 2606 -3609 2592 262 66 43 chr12 43962600 43964197 -100318292 + L1MEc LINE L1 2714 4346 -1869 1850 268 62 10 chr12 43964188 43964815 -100317674 + L1ME3A LINE L1 418 1077 -5644 * 2366 81 0 7 chr12 43964815 43965125 -100317364 + AluSq SINE Alu 1 308 -5 766 215 99 79 chr12 43965169 43965485 -100317004 + L1ME3A LINE L1 1790 2157 -4564 870 178 6 0 chr12 43965485 43965642 -100316847 + L1MB7 LINE L1 6008 6165 -19 766 215 99 79 chr12 43965642 43965750 -100316739 + L1ME3A LINE L1 2157 2261 -4460 485 272 6 6 chr12 43965749 43965922 -100316567 + L1ME3A LINE L1 4944 5116 -1424 * 815 242 130 28 chr12 43966016 43966338 -100316151 + L1ME3A LINE L1 6003 6357 -207 278 295 29 69 chr12 43966393 43966566 -100315923 + L1ME3A LINE L1 6364 6529 -35 35 24 0 0 chr12 43966687 43966729 -100315760 + AT_rich Low_complexity Low_complexity 1 42 0 266 250 10 60 chr12 43967285 43967385 -100315104 + MARNA DNA Mariner 401 495 -91 441 288 0 25 chr12 43967401 43967519 -100314970 - L2 LINE L2 -1 3312 3198 2133 94 44 0 chr12 43968006 43968303 -100314186 + AluSx SINE Alu 1 310 -2 1478 164 22 22 chr12 43968484 43968753 -100313736 - AluJo SINE Alu -43 269 1 21 0 0 0 chr12 43969542 43969563 -100312926 + AT_rich Low_complexity Low_complexity 1 21 0 468 0 0 0 chr12 43969618 43969670 -100312819 + (T)n Simple_repeat Simple_repeat 1 52 0 378 0 0 0 chr12 43969904 43969946 -100312543 + (CA)n Simple_repeat Simple_repeat 2 43 0 2220 140 13 67 chr12 43969946 43970396 -100312093 + MER67D LTR ERV1 1 426 -88 1993 181 7 22 chr12 43970400 43971025 -100311464 + L1M2 LINE L1 5085 5697 -684 2146 111 10 0 chr12 43971025 43971314 -100311175 + AluSx SINE Alu 1 292 -20 287 94 118 59 chr12 43971332 43971417 -100311072 + MLT1B LTR MaLR 95 184 -206 271 77 19 39 chr12 43971421 43971473 -100311016 + (TCTCC)n Simple_repeat Simple_repeat 5 55 0 369 0 0 0 chr12 43971485 43971526 -100310963 + (TC)n Simple_repeat Simple_repeat 1 41 0 297 275 66 0 chr12 43971532 43971623 -100310866 + MLT1B LTR MaLR 192 288 -102 245 243 122 9 chr12 43972251 43972358 -100310131 + L1ME4a LINE L1 5999 6117 -4 331 250 0 0 chr12 43973120 43973200 -100309289 - MER103 DNA DNA -46 120 41 653 261 42 56 chr12 43973957 43974172 -100308317 - MIR SINE MIR -50 212 1 358 260 0 13 chr12 43974176 43974253 -100308236 + L2 LINE L2 3147 3222 -50 1086 151 0 13 chr12 43974287 43974446 -100308043 - FRAM SINE Alu -7 159 3 776 347 55 17 chr12 43974811 43975229 -100307260 + L3 LINE CR1 439 872 -705 575 293 120 34 chr12 43976355 43976772 -100305717 + MLT1J LTR MaLR 1 453 -58 202 250 18 18 chr12 43977123 43977179 -100305310 + L3 LINE CR1 1233 1288 -289 948 177 30 25 chr12 43979314 43979517 -100302972 + AluJo SINE Alu 86 289 -23 2408 202 84 18 chr12 43979659 43980391 -100302098 - L1ME3 LINE L1 -2 6160 5377 267 307 143 14 chr12 43980827 43980967 -100301522 + L3 LINE CR1 1402 1559 -18 431 245 11 0 chr12 43981051 43981145 -100301344 - MIR SINE MIR -16 246 152 2202 210 104 11 chr12 43981146 43981674 -100300815 - MLT1E LTR MaLR 0 593 17 1586 150 96 37 chr12 43981675 43982029 -100300460 - THE1C LTR MaLR 0 375 1 9893 124 8 36 chr12 43982029 43983652 -100298837 - THE1C-int LTR MaLR 0 1580 3 1591 195 80 11 chr12 43983656 43984005 -100298484 - THE1C LTR MaLR -2 373 1 253 258 45 0 chr12 43984005 43984071 -100298418 - MIR SINE MIR -106 156 88 468 305 30 0 chr12 43985017 43985148 -100297341 + MIR SINE MIR 12 146 -116 2053 118 34 0 chr12 43985150 43985472 -100297017 + L1PA16 LINE L1 5825 6157 -9 25 0 0 0 chr12 43985473 43985498 -100296991 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr12 43986078 43986109 -100296380 + AT_rich Low_complexity Low_complexity 1 31 0 2361 112 0 0 chr12 43986445 43986757 -100295732 - AluSx SINE Alu 0 312 1 1270 217 40 39 chr12 43986932 43987178 -100295311 + L1ME2 LINE L1 5626 5870 -300 1474 131 4 4 chr12 43987178 43987437 -100295052 + L1MA4 LINE L1 6037 6295 -5 1270 217 40 39 chr12 43987437 43987673 -100294816 + L1ME2 LINE L1 5870 6143 -27 23 0 0 0 chr12 43987684 43987707 -100294782 + AT_rich Low_complexity Low_complexity 1 23 0 552 79 0 69 chr12 43987707 43987808 -100294681 + L1PA8 LINE L1 6077 6170 -2 321 125 0 0 chr12 43988150 43988206 -100294283 + (CA)n Simple_repeat Simple_repeat 1 56 0 346 252 74 45 chr12 43988578 43988740 -100293749 + MER5A DNA MER1_type 4 175 -3 815 225 6 22 chr12 43989919 43990097 -100292392 - MER45A DNA AcHobo 0 178 4 946 202 57 26 chr12 43990614 43990945 -100291544 + L1MCa LINE L1 1419 1953 -4654 1645 190 41 19 chr12 43990945 43991308 -100291181 - MLT1A2 LTR MaLR 0 374 4 946 202 57 26 chr12 43991308 43991352 -100291137 + L1MCa LINE L1 1953 1994 -4613 2493 66 0 0 chr12 43991367 43991670 -100290819 + AluY SINE Alu 1 303 -8 290 301 8 90 chr12 43991686 43991819 -100290670 + L2 LINE L2 3192 3313 0 557 263 93 17 chr12 43992192 43992428 -100290061 + L1ME2 LINE L1 5901 6154 -10 * 4287 209 118 38 chr12 43992426 43993432 -100289057 + L1MC4 LINE L1 6354 7511 -531 2095 121 3 10 chr12 43993432 43993781 -100288708 - AluSx SINE Alu 0 312 1 4287 209 118 38 chr12 43993781 43994207 -100288282 + L1MC4 LINE L1 7511 7901 -141 302 169 0 0 chr12 43994247 43994306 -100288183 + L1MA4 LINE L1 6194 6252 -48 475 190 13 69 chr12 43994351 43994517 -100287972 + L1MC4 LINE L1 7902 7995 0 1489 157 0 0 chr12 43994750 43995012 -100287477 - L1MA3 LINE L1 0 6305 6044 336 303 133 0 chr12 43995119 43995284 -100287205 + MIR SINE MIR 19 205 -57 1937 168 0 0 chr12 43995284 43995575 -100286914 + AluJb SINE Alu 1 292 -15 351 0 0 0 chr12 43995575 43995614 -100286875 + (TG)n Simple_repeat Simple_repeat 2 40 0 430 274 114 30 chr12 43995656 43995857 -100286632 - MIR SINE MIR -44 218 1 2301 95 3 13 chr12 43996197 43996513 -100285976 + AluSp SINE Alu 1 313 0 214 158 0 26 chr12 43997053 43997091 -100285398 + GA-rich Low_complexity Low_complexity 3 39 0 321 89 0 0 chr12 43997472 43997517 -100284972 + (CA)n Simple_repeat Simple_repeat 1 45 0 653 307 24 32 chr12 43997913 43998164 -100284325 - MIR SINE MIR 0 262 14 926 299 164 27 chr12 43999392 43999941 -100282548 - L3 LINE CR1 -288 1289 666 488 322 7 7 chr12 44000082 44000225 -100282264 - MER5A DNA MER1_type 0 189 47 351 0 0 0 chr12 44000297 44000336 -100282153 + (TG)n Simple_repeat Simple_repeat 2 40 0 294 87 0 0 chr12 44000337 44000383 -100282106 + (GA)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chr12 44000906 44000929 -100281560 + AT_rich Low_complexity Low_complexity 1 23 0 345 281 61 0 chr12 44001447 44001561 -100280928 - MIR SINE MIR -12 250 130 511 261 65 65 chr12 44001667 44002019 -100280470 + LTR16A LTR ERVL 46 397 -53 232 204 20 0 chr12 44002159 44002208 -100280281 + A-rich Low_complexity Low_complexity 3 52 0 376 250 36 27 chr12 44002473 44002585 -100279904 + MER81 DNA DNA 1 113 -1 453 249 45 57 chr12 44005331 44005574 -100276915 + L1ME4a LINE L1 5543 5783 -338 2334 99 0 37 chr12 44005807 44006131 -100276358 + AluSx SINE Alu 1 312 0 737 279 10 10 chr12 44006149 44006357 -100276132 - MER58A DNA MER1_type -16 208 1 198 250 0 33 chr12 44006369 44006429 -100276060 - L2 LINE L2 -64 3249 3192 369 301 0 39 chr12 44006515 44006618 -100275871 - L2 LINE L2 -38 3234 3136 323 234 105 40 chr12 44006649 44006773 -100275716 + L1ME4a LINE L1 5970 6101 -20 922 223 70 77 chr12 44007372 44007657 -100274832 + MER77 LTR ERV1 320 673 -6 201 182 0 0 chr12 44008843 44008876 -100273613 + A-rich Low_complexity Low_complexity 1 33 0 1720 182 36 12 chr12 44009119 44009448 -100273041 - MER58B DNA MER1_type -1 340 4 42446 38 1 3 chr12 44009526 44015696 -100266793 - L1PA3 LINE L1 -3 6152 1 373 317 30 24 chr12 44015890 44015990 -100266499 + MER5A DNA MER1_type 19 122 -67 1494 165 20 30 chr12 44015990 44016293 -100266196 + L1MB5 LINE L1 5875 6174 0 373 317 30 24 chr12 44016293 44016359 -100266130 + MER5A DNA MER1_type 122 186 -3 225 222 133 22 chr12 44017915 44018005 -100264484 - MIR SINE MIR 0 262 163 504 264 147 8 chr12 44018150 44018279 -100264210 - MIR3 SINE MIR -52 156 10 301 251 83 4 chr12 44018351 44018449 -100264040 - MER5A DNA MER1_type -80 109 3 529 193 0 76 chr12 44018545 44018664 -100263825 - MER81 DNA DNA 0 114 5 668 203 11 91 chr12 44018786 44018894 -100263595 + MER45A DNA AcHobo 1 89 -1492 3253 142 13 59 chr12 44018894 44019571 -100262918 - L1MB7 LINE L1 -14 6170 5525 668 203 11 91 chr12 44019571 44019649 -100262840 + MER45A DNA AcHobo 89 172 -6 272 311 104 0 chr12 44019954 44020060 -100262429 - L2 LINE L2 -2 3311 3195 27 0 0 0 chr12 44021083 44021110 -100261379 + AT_rich Low_complexity Low_complexity 1 27 0 862 175 0 0 chr12 44021435 44021572 -100260917 + FRAM SINE Alu 20 156 -20 182 192 172 61 chr12 44021601 44021700 -100260789 + L2 LINE L2 2675 2784 -530 7245 48 2 1 chr12 44021796 44023418 -100259071 + L1PA7 LINE L1 4538 6151 -3 293 373 76 27 chr12 44023994 44024219 -100258270 - L2 LINE L2 -522 2792 2557 455 227 85 57 chr12 44024589 44024765 -100257724 + MIR SINE MIR 4 184 -78 1015 270 162 21 chr12 44025160 44025678 -100256811 - MLT1H1 LTR MaLR 0 595 12 1426 225 147 20 chr12 44025843 44026291 -100256198 + MLT1D LTR MaLR 1 505 0 267 301 181 0 chr12 44026638 44026771 -100255718 + MIR SINE MIR 105 261 -1 1372 147 0 0 chr12 44026935 44027132 -100255357 - AluJb SINE Alu -115 197 1 881 135 25 90 chr12 44027243 44027443 -100255046 + MER5A DNA MER1_type 1 187 -2 1791 25 5 0 chr12 44027630 44027830 -100254659 - L1PA5 LINE L1 -8 6146 5946 186 293 0 0 chr12 44028883 44028924 -100253565 - L2 LINE L2 -11 3261 3221 835 250 86 12 chr12 44028948 44029192 -100253297 + MIR SINE MIR 1 262 0 307 284 0 69 chr12 44029198 44029300 -100253189 + L2 LINE L2 3167 3261 -11 1090 244 146 11 chr12 44029384 44029552 -100252937 - LTR33 LTR ERVL 0 521 377 2668 111 14 8 chr12 44029552 44029921 -100252568 - THE1C LTR MaLR -4 371 1 1090 244 146 11 chr12 44029921 44030108 -100252381 - LTR33 LTR ERVL -144 377 118 * 1189 208 56 10 chr12 44030105 44030393 -100252096 - Charlie4a DNA MER1_type -176 332 32 865 212 14 106 chr12 44030657 44030949 -100251540 - L2 LINE L2 0 3313 3049 1718 145 46 11 chr12 44030981 44031262 -100251227 + AluJb SINE Alu 1 291 -21 2151 110 17 17 chr12 44031262 44031563 -100250926 + AluSp SINE Alu 1 301 -12 1253 83 0 6 chr12 44031573 44031754 -100250735 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 223 245 20 0 chr12 44031918 44031967 -100250522 + MIR3 SINE MIR 111 160 -48 318 26 0 0 chr12 44032620 44032659 -100249830 + (CA)n Simple_repeat Simple_repeat 2 40 0 543 199 15 129 chr12 44033311 44033512 -100248977 - MER5B DNA MER1_type 0 178 1 181 259 19 0 chr12 44033622 44033676 -100248813 + L2 LINE L2 3254 3308 -5 823 172 25 0 chr12 44035398 44035555 -100246934 - MER5A DNA MER1_type -27 162 2 256 332 77 31 chr12 44035911 44036107 -100246382 - L2 LINE L2 -193 3079 2875 2154 121 3 7 chr12 44036415 44036721 -100245768 + AluSx SINE Alu 1 305 -7 2387 86 0 0 chr12 44037857 44038161 -100244328 + AluY SINE Alu 1 304 -7 298 221 228 24 chr12 44038202 44038329 -100244160 - L2 LINE L2 0 3313 3161 490 214 48 24 chr12 44038433 44038559 -100243930 + MER5B DNA MER1_type 50 178 0 532 262 8 0 chr12 44038614 44038740 -100243749 - L2 LINE L2 0 3313 3187 436 208 169 32 chr12 44038759 44038913 -100243576 - MIR SINE MIR -70 192 18 592 137 0 69 chr12 44039397 44039499 -100242990 + MLT1B LTR MaLR 1 95 -295 235 89 54 107 chr12 44039497 44039553 -100242936 - MLT1B LTR MaLR -276 114 62 * 1786 117 7 43 chr12 44039579 44039879 -100242610 + MLT1B LTR MaLR 102 390 0 2602 170 19 27 chr12 44040180 44040692 -100241797 + L1MA4A LINE L1 5615 6122 -181 376 253 0 0 chr12 44040697 44040788 -100241701 + L1MA4A LINE L1 6190 6280 -23 201 156 0 0 chr12 44040862 44040894 -100241595 + MIR SINE MIR 67 98 -164 296 214 43 14 chr12 44041183 44041253 -100241236 - MIR SINE MIR 0 262 191 519 138 0 0 chr12 44041258 44041338 -100241151 + L1M2 LINE L1 5695 5774 -526 387 280 112 24 chr12 44041341 44041466 -100241023 - MIR SINE MIR -98 164 29 380 252 67 52 chr12 44041540 44041675 -100240814 - MIR3 SINE MIR -57 151 15 213 39 0 0 chr12 44041837 44041863 -100240626 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 458 309 80 36 chr12 44041945 44042194 -100240295 - MIR SINE MIR 0 262 3 1568 124 4 25 chr12 44042250 44042492 -100239997 - AluSg/x SINE Alu -4 308 72 569 96 0 0 chr12 44042495 44042568 -100239921 + AluS SINE Alu 5 77 -236 419 344 25 6 chr12 44042700 44042863 -100239626 + MER5A DNA MER1_type 24 189 0 210 211 0 0 chr12 44043531 44043569 -100238920 - MIR SINE MIR -5 257 220 1384 189 65 18 chr12 44044051 44044326 -100238163 + AluJo SINE Alu 1 288 -24 2398 62 0 0 chr12 44044395 44044684 -100237805 + AluY SINE Alu 1 289 -22 538 268 35 14 chr12 44045690 44045832 -100236657 + MIR SINE MIR 29 173 -89 2303 101 0 0 chr12 44045964 44046261 -100236228 + AluSq SINE Alu 1 297 -16 923 269 140 49 chr12 44046914 44047386 -100235103 - MLT1H1 LTR MaLR 0 555 41 221 350 117 20 chr12 44047515 44047712 -100234777 + MIR SINE MIR 2 217 -45 1753 131 29 4 chr12 44048025 44048335 -100234154 - AluSx SINE Alu 0 317 1 2043 128 0 18 chr12 44049072 44049354 -100233135 - AluSx SINE Alu -35 277 1 1197 145 5 33 chr12 44051854 44052068 -100230421 - AluJo SINE Alu -15 297 90 1627 128 180 80 chr12 44052993 44053034 -100229455 - MSTA LTR MaLR 0 428 393 2068 120 0 71 chr12 44053034 44053360 -100229129 + AluSx SINE Alu 1 303 -9 1627 128 180 80 chr12 44053360 44053542 -100228947 - MSTA LTR MaLR -35 393 231 2492 75 3 0 chr12 44053542 44053849 -100228640 - AluY SINE Alu -3 308 1 1627 128 180 80 chr12 44053849 44054013 -100228476 - MSTA LTR MaLR -197 231 1 368 302 56 8 chr12 44054858 44054984 -100227505 - L2 LINE L2 -1 3271 3140 310 315 77 7 chr12 44055220 44055363 -100227126 + MIR3 SINE MIR 31 183 -25 21 0 0 0 chr12 44057497 44057518 -100224971 + AT_rich Low_complexity Low_complexity 1 21 0 783 207 0 15 chr12 44058232 44058367 -100224122 + FLAM_A SINE Alu 1 133 0 2023 116 0 62 chr12 44058554 44058874 -100223615 + AluSx SINE Alu 1 300 -12 22 35 0 0 chr12 44059177 44059206 -100223283 + AT_rich Low_complexity Low_complexity 1 29 0 261 294 35 0 chr12 44059327 44059412 -100223077 + MIR3 SINE MIR 100 187 -21 266 289 230 7 chr12 44059745 44059880 -100222609 + L1MC4a LINE L1 5496 5660 -2148 2091 107 126 27 chr12 44059903 44060276 -100222213 - MSTA LTR MaLR -18 410 1 404 238 66 40 chr12 44060321 44060472 -100222017 + LTR50 LTR ERVL 1 155 -640 287 297 25 8 chr12 44060766 44060884 -100221605 + LTR33A LTR ERVL 404 523 0 625 264 43 22 chr12 44060884 44061115 -100221374 + L1MC4a LINE L1 5689 5924 -1884 244 301 41 0 chr12 44062082 44062155 -100220334 - MLT2E LTR ERVL -2 626 551 903 142 34 0 chr12 44062185 44062333 -100220156 - MER30 DNA MER1_type -77 153 1 618 215 49 21 chr12 44062459 44062603 -100219886 - MLT2E LTR ERVL -452 176 29 1687 158 9 48 chr12 44062678 44062994 -100219495 + AluJb SINE Alu 3 306 -6 1999 266 172 4 chr12 44062999 44063709 -100218780 + L2 LINE L2 1964 2792 -522 288 333 75 13 chr12 44063691 44063850 -100218639 + L2 LINE L2 3011 3179 -134 * 1459 201 44 10 chr12 44064316 44064441 -100218048 + AluJb SINE Alu 1 120 -192 369 0 0 0 chr12 44064441 44064482 -100218007 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1459 201 44 10 chr12 44064482 44064650 -100217839 + AluJb SINE Alu 120 304 -8 375 228 69 41 chr12 44064800 44064945 -100217544 + MIR3 SINE MIR 19 167 -41 1886 154 0 3 chr12 44065189 44065511 -100216978 - AluSx SINE Alu 0 321 1 295 216 69 39 chr12 44065867 44065969 -100216520 + MER94 DNA DNA 3 107 -27 264 135 0 0 chr12 44066276 44066313 -100216176 + FLAM_A SINE Alu 1 37 -102 433 132 0 15 chr12 44066734 44066802 -100215687 + AluS SINE Alu 2 68 -245 664 246 110 4 chr12 44066825 44067061 -100215428 - MIR SINE MIR -1 261 1 1945 118 6 70 chr12 44067428 44067743 -100214746 + AluSx SINE Alu 1 295 -17 1315 189 16 12 chr12 44070174 44070423 -100212066 - MIR SINE MIR 0 262 13 333 158 24 37 chr12 44070699 44070781 -100211708 + L1MB3 LINE L1 5418 5498 -682 584 234 0 0 chr12 44070793 44070900 -100211589 + FLAM_A SINE Alu 16 122 -20 4357 130 37 3 chr12 44070912 44071591 -100210898 + L1MB3 LINE L1 5473 6174 -9 400 268 148 16 chr12 44071671 44071854 -100210635 - L1MC4a LINE L1 -1901 5907 5701 354 207 92 11 chr12 44071972 44072059 -100210430 - MLT1I LTR MaLR -38 371 278 224 290 32 0 chr12 44072328 44072390 -100210099 + L2 LINE L2 3204 3267 -5 7328 118 19 2 chr12 44072485 44074355 -100208134 + L1MA3 LINE L1 4404 6305 0 210 342 25 0 chr12 44075035 44075114 -100207375 + L2 LINE L2 3191 3271 -1 2092 173 83 130 chr12 44075239 44076002 -100206487 - LTR8A LTR ERV1 0 727 1 566 257 81 40 chr12 44076365 44076587 -100205902 + L3 LINE CR1 1238 1468 -109 2600 46 0 0 chr12 44076630 44076932 -100205557 + AluY SINE Alu 1 302 -9 1459 167 65 22 chr12 44077705 44077980 -100204509 + AluJo SINE Alu 1 287 -25 50 0 0 0 chr12 44077980 44078030 -100204459 + AT_rich Low_complexity Low_complexity 1 50 0 6418 20 0 0 chr12 44078248 44078986 -100203503 - L1PA2 LINE L1 -1 6154 5417 270 73 0 0 chr12 44079148 44079189 -100203300 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 26 30 0 0 chr12 44079426 44079459 -100203030 + AT_rich Low_complexity Low_complexity 1 33 0 41997 41 1 2 chr12 44079631 44085800 -100196689 - L1PA3 LINE L1 0 6155 7 403 207 72 8 chr12 44086038 44086164 -100196325 + MIR SINE MIR 43 176 -63 * 428 300 80 32 chr12 44086162 44086412 -100196077 - L2 LINE L2 -1 3312 3051 698 284 45 45 chr12 44086571 44086884 -100195605 + L1MEd LINE L1 22 334 -5785 1322 158 65 72 chr12 44086901 44087193 -100195296 + AluJo SINE Alu 7 296 -16 547 195 59 35 chr12 44087237 44087571 -100194918 + L1MEd LINE L1 388 836 -5283 910 97 179 0 chr12 44087711 44087845 -100194644 + AluSc SINE Alu 1 158 -151 210 91 0 0 chr12 44087861 44087894 -100194595 + (TA)n Simple_repeat Simple_repeat 2 34 0 313 315 0 0 chr12 44087894 44087986 -100194503 - L1MC4 LINE L1 -1339 6703 6612 808 130 0 48 chr12 44088282 44088428 -100194061 - FRAM SINE Alu -37 139 1 2164 110 66 87 chr12 44088522 44088959 -100193530 + MSTA LTR MaLR 1 428 0 588 204 0 0 chr12 44091493 44091596 -100190893 + AluJb SINE Alu 1 103 -209 22 35 0 0 chr12 44091602 44091631 -100190858 + AT_rich Low_complexity Low_complexity 1 29 0 1030 116 32 16 chr12 44091728 44091917 -100190572 - L1MB2 LINE L1 0 6171 5980 856 167 68 0 chr12 44092204 44092366 -100190123 - AluJb SINE Alu -3 309 137 919 209 34 5 chr12 44092394 44092600 -100189889 + MLT2E LTR ERVL 415 626 -2 772 210 20 109 chr12 44092605 44093013 -100189476 - MER34 LTR ERV1 -1 541 177 1175 144 28 11 chr12 44093040 44093221 -100189268 + AluJo SINE Alu 3 186 -126 1108 29 0 0 chr12 44093251 44093388 -100189101 - L1PA4 LINE L1 -180 5975 5839 727 85 9 0 chr12 44093388 44093492 -100188997 + L1PA4 LINE L1 6047 6153 -2 561 170 35 26 chr12 44093496 44093664 -100188825 - MER34B LTR ERV1 -357 185 4 277 211 92 18 chr12 44093671 44093780 -100188709 + L1ME4a LINE L1 5949 6065 -56 25 0 0 0 chr12 44094401 44094426 -100188063 + AT_rich Low_complexity Low_complexity 1 25 0 983 168 102 31 chr12 44094654 44094850 -100187639 + AluJb SINE Alu 84 293 -19 28 0 0 0 chr12 44094871 44094899 -100187590 + AT_rich Low_complexity Low_complexity 1 28 0 2323 105 0 7 chr12 44095049 44095355 -100187134 + AluSx SINE Alu 1 304 -8 387 335 77 12 chr12 44095366 44095536 -100186953 + MIR SINE MIR 57 237 -25 239 299 0 0 chr12 44095772 44095839 -100186650 + HAL1 LINE L1 10 76 -2431 1881 177 26 16 chr12 44095839 44096304 -100186185 + MLT2B1 LTR ERVL 1 515 0 2299 255 119 72 chr12 44096318 44097303 -100185186 + HAL1 LINE L1 94 1173 -1334 2360 113 0 0 chr12 44097303 44097613 -100184876 + AluSx SINE Alu 1 310 -2 2299 255 119 72 chr12 44097613 44098119 -100184370 + HAL1 LINE L1 1173 1654 -853 294 164 0 0 chr12 44098148 44098203 -100184286 + CT-rich Low_complexity Low_complexity 3 57 0 804 319 74 13 chr12 44098205 44098597 -100183892 + MLT1J LTR MaLR 36 451 -60 2008 144 0 3 chr12 44098843 44099135 -100183354 + AluJb SINE Alu 1 291 -21 42036 40 3 1 chr12 44099144 44105283 -100177206 + L1PA4 LINE L1 4 6152 -3 26 30 0 0 chr12 44105283 44105316 -100177173 + AT_rich Low_complexity Low_complexity 1 33 0 2034 113 66 36 chr12 44105635 44105999 -100176490 - THE1C LTR MaLR 0 375 1 313 134 45 0 chr12 44106796 44106863 -100175626 + MLT1J LTR MaLR 439 508 -3 2345 70 7 3 chr12 44107285 44107586 -100174903 - AluY SINE Alu -9 302 1 309 249 34 124 chr12 44108220 44108397 -100174092 - L2 LINE L2 -52 3261 3101 1105 233 113 55 chr12 44108447 44108944 -100173545 - MLT1H1 LTR MaLR 0 577 20 2705 251 241 41 chr12 44108958 44109505 -100172984 - L2 LINE L2 -266 3047 2611 2126 106 27 7 chr12 44109505 44109806 -100172683 + AluSx SINE Alu 1 307 -5 2705 251 241 41 chr12 44109806 44110728 -100171761 - L2 LINE L2 -702 2611 1271 1942 116 52 68 chr12 44110728 44111109 -100171380 + THE1C LTR MaLR 1 375 0 2705 251 241 41 chr12 44111109 44111158 -100171331 - L2 LINE L2 -2042 1271 1233 3088 143 45 14 chr12 44111167 44111996 -100170493 + MER49 LTR ERV1 16 908 -15 1982 224 102 37 chr12 44112019 44112207 -100170282 - L2 LINE L2 -2075 1239 1065 1821 145 0 43 chr12 44112207 44112511 -100169978 - AluJb SINE Alu -19 293 3 1982 224 102 37 chr12 44112511 44112920 -100169569 - L2 LINE L2 -2249 1065 603 468 293 27 32 chr12 44113350 44113538 -100168951 - L2 LINE L2 -563 2751 2565 2650 77 26 0 chr12 44113641 44114020 -100168469 - L1PA7 LINE L1 -209 5945 5557 1371 80 0 10 chr12 44114007 44114206 -100168283 + L1PA7 LINE L1 5938 6134 -20 * 258 356 46 0 chr12 44114225 44114312 -100168177 + L2 LINE L2 2961 3051 -221 891 189 26 83 chr12 44114406 44114634 -100167855 - MER20 DNA MER1_type -4 215 1 234 257 119 64 chr12 44115038 44115147 -100167342 - L2 LINE L2 -14 3299 3185 643 196 146 10 chr12 44115151 44115350 -100167139 + MER33 DNA MER1_type 8 233 -91 21 36 0 0 chr12 44115359 44115387 -100167102 + AT_rich Low_complexity Low_complexity 1 28 0 412 47 16 16 chr12 44115485 44115549 -100166940 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 1630 158 38 8 chr12 44115553 44115819 -100166670 - AluJo SINE Alu -30 282 9 474 39 51 51 chr12 44115939 44116017 -100166472 - MADE1 DNA Mariner -1 79 2 1884 136 0 7 chr12 44116764 44117050 -100165439 - AluJb SINE Alu -28 284 1 2146 109 7 0 chr12 44117060 44117345 -100165144 - AluSc SINE Alu -22 287 1 356 340 75 0 chr12 44117782 44117941 -100164548 + MLT1L LTR MaLR 357 527 -88 1968 148 3 7 chr12 44118644 44118942 -100163547 - AluJo SINE Alu -15 297 1 24 0 0 0 chr12 44119337 44119361 -100163128 + AT_rich Low_complexity Low_complexity 1 24 0 209 267 167 11 chr12 44119913 44120003 -100162486 + MER5A DNA MER1_type 1 104 -85 238 294 7 42 chr12 44120338 44120526 -100161963 + CT-rich Low_complexity Low_complexity 1 181 0 242 211 39 0 chr12 44121752 44121804 -100160685 - MER5A DNA MER1_type 0 189 136 28 0 0 0 chr12 44124118 44124146 -100158343 + AT_rich Low_complexity Low_complexity 1 28 0 527 266 52 73 chr12 44125363 44125411 -100157078 - MIR SINE MIR -20 242 194 1998 46 0 0 chr12 44125411 44125651 -100156838 + L1PA5 LINE L1 5906 6145 -9 527 266 52 73 chr12 44125651 44125835 -100156654 - MIR SINE MIR -68 194 15 326 304 72 14 chr12 44126516 44126654 -100155835 + L2 LINE L2 2905 3050 -222 24 32 0 0 chr12 44127434 44127465 -100155024 + AT_rich Low_complexity Low_complexity 1 31 0 353 289 84 74 chr12 44128009 44128293 -100154196 + L2 LINE L2 2836 3122 -150 767 286 97 69 chr12 44128830 44128924 -100153565 + L1M4 LINE L1 4369 4459 -1687 1466 101 60 5 chr12 44128924 44129142 -100153347 + MER30 DNA MER1_type 1 230 0 767 286 97 69 chr12 44129142 44129268 -100153221 + L1M4 LINE L1 4459 4580 -1566 2215 96 0 10 chr12 44129268 44129561 -100152928 - AluSq SINE Alu -23 290 1 767 286 97 69 chr12 44129561 44129838 -100152651 + L1M4 LINE L1 4580 4891 -1255 652 119 0 175 chr12 44129838 44129998 -100152491 - FLAM_C SINE Alu -1 132 1 767 286 97 69 chr12 44129998 44130139 -100152350 + L1M4 LINE L1 4891 5027 -1119 1759 178 34 3 chr12 44130239 44130531 -100151958 + AluJb SINE Alu 1 301 -11 1044 197 10 14 chr12 44130536 44130744 -100151745 + AluJo SINE Alu 1 207 -105 30477 43 4 4 chr12 44130866 44134843 -100147646 - L1P LINE L1 -2165 3981 3 991 178 0 35 chr12 44135272 44135446 -100147043 + AluJb SINE Alu 135 302 -10 180 0 0 0 chr12 44136445 44136465 -100146024 + (T)n Simple_repeat Simple_repeat 1 20 0 462 279 19 39 chr12 44137495 44137649 -100144840 - L2 LINE L2 -2 3311 3161 2031 131 3 3 chr12 44138289 44138580 -100143909 - AluSx SINE Alu -21 291 1 1592 131 0 0 chr12 44138786 44139008 -100143481 - AluSx SINE Alu -28 284 63 1163 223 65 53 chr12 44139125 44139537 -100142952 + L1ME1 LINE L1 5750 6166 0 799 149 51 46 chr12 44139586 44139761 -100142728 + FRAM SINE Alu 1 40 0 209 218 269 13 chr12 44139783 44139861 -100142628 + MER5B DNA MER1_type 81 178 0 355 213 75 0 chr12 44139861 44139955 -100142534 + L2 LINE L2 2215 2315 -999 1474 157 5 0 chr12 44139955 44140178 -100142311 + AluSx SINE Alu 1 224 -88 486 228 23 116 chr12 44140417 44140720 -100141769 + L1MC4 LINE L1 7768 8042 0 326 123 18 0 chr12 44142072 44142129 -100140360 + (TA)n Simple_repeat Simple_repeat 2 59 0 1788 158 14 7 chr12 44142883 44143174 -100139315 + AluJb SINE Alu 2 294 -18 25 83 0 0 chr12 44143268 44143328 -100139161 + AT_rich Low_complexity Low_complexity 1 60 0 386 221 110 73 chr12 44143528 44143782 -100138707 + MER5C DNA MER1_type 1 324 0 22 0 0 0 chr12 44143791 44143813 -100138676 + AT_rich Low_complexity Low_complexity 1 22 0 26 74 0 0 chr12 44144218 44144272 -100138217 + AT_rich Low_complexity Low_complexity 1 54 0 384 262 85 58 chr12 44144486 44144727 -100137762 + L1M4 LINE L1 5242 5492 -682 2145 121 0 3 chr12 44144887 44145184 -100137305 - AluSx SINE Alu -16 296 1 266 170 0 0 chr12 44145186 44145233 -100137256 - AluSg/x SINE Alu -170 130 84 983 120 0 0 chr12 44145233 44145358 -100137131 - AluSq/x SINE Alu -188 125 1 1995 165 0 0 chr12 44145431 44145740 -100136749 - AluJb SINE Alu -3 309 1 22 0 0 0 chr12 44145745 44145767 -100136722 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr12 44145976 44146002 -100136487 + AT_rich Low_complexity Low_complexity 1 26 0 217 132 0 0 chr12 44146635 44146673 -100135816 + (T)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chr12 44146715 44146743 -100135746 + AT_rich Low_complexity Low_complexity 1 28 0 800 164 0 8 chr12 44146743 44146877 -100135612 - FLAM_C SINE Alu 0 133 1 2340 75 3 19 chr12 44147122 44147430 -100135059 + AluSc SINE Alu 1 303 -6 258 321 0 12 chr12 44148446 44148527 -100133962 + L2 LINE L2 3193 3272 0 421 336 37 37 chr12 44148852 44149096 -100133393 + L2 LINE L2 2631 2874 -440 203 313 30 0 chr12 44149359 44149426 -100133063 + L2 LINE L2 3242 3310 -3 509 290 74 3 chr12 44149728 44149928 -100132561 - MIR SINE MIR -45 217 6 370 294 81 113 chr12 44150073 44150691 -100131798 - L1M2 LINE L1 -5467 1382 785 222 91 0 0 chr12 44150996 44151029 -100131460 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr12 44151953 44151981 -100130508 + AT_rich Low_complexity Low_complexity 1 28 0 1571 167 27 50 chr12 44152377 44152677 -100129812 + AluJo SINE Alu 7 299 -13 342 292 55 31 chr12 44153178 44153315 -100129174 + MIR SINE MIR 14 151 -65 1076 169 55 0 chr12 44153321 44153557 -100128932 - L1MA9 LINE L1 0 6312 6064 270 336 16 8 chr12 44153790 44153912 -100128577 - MLT1K LTR MaLR -325 263 141 353 322 33 16 chr12 44154640 44154761 -100127728 + MER5A DNA MER1_type 61 183 -6 2436 81 0 0 chr12 44154817 44155115 -100127374 - AluY SINE Alu -13 298 1 2178 125 51 14 chr12 44155320 44155672 -100126817 - MLT1A1 LTR MaLR 0 365 1 24 53 0 0 chr12 44155695 44155733 -100126756 + AT_rich Low_complexity Low_complexity 1 38 0 1083 146 6 12 chr12 44155800 44155964 -100126525 - AluJb SINE Alu -13 299 137 1881 99 33 59 chr12 44155964 44156267 -100126222 - AluSx SINE Alu -17 295 1 279 79 0 0 chr12 44156694 44156732 -100125757 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1927 123 18 0 chr12 44156753 44157029 -100125460 - AluSx SINE Alu -31 281 1 1993 55 0 32 chr12 44157236 44157489 -100125000 - AluY SINE Alu -11 300 56 2213 110 13 0 chr12 44157489 44157788 -100124701 - AluY SINE Alu -8 303 1 436 134 0 0 chr12 44157788 44157855 -100124634 - AluSq/x SINE Alu -177 136 70 1426 160 47 23 chr12 44157949 44158205 -100124284 + AluJb SINE Alu 3 264 -48 384 88 0 0 chr12 44158206 44158263 -100124226 + (TATG)n Simple_repeat Simple_repeat 2 58 0 353 202 21 64 chr12 44158330 44158424 -100124065 - L1MD2 LINE L1 -239 6120 6031 1864 157 65 19 chr12 44159161 44159574 -100122915 - L1MB7 LINE L1 -135 6049 5618 392 122 27 14 chr12 44159554 44159628 -100122861 + L1MB7 LINE L1 6059 6133 -51 * 566 306 45 30 chr12 44159660 44159925 -100122564 - MLT1I LTR MaLR -39 370 102 1208 161 24 15 chr12 44160491 44160696 -100121793 + AluJo SINE Alu 87 293 -19 2012 145 0 19 chr12 44160783 44161101 -100121388 - AluJo SINE Alu 0 312 1 580 304 117 38 chr12 44161447 44161712 -100120777 - MLT1G3 LTR MaLR -228 304 62 198 0 0 0 chr12 44161712 44161734 -100120755 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 1956 136 18 0 chr12 44161734 44162014 -100120475 - AluSx SINE Alu -26 286 2 580 304 117 38 chr12 44162014 44162069 -100120420 - MLT1G3 LTR MaLR -469 63 1 257 320 37 34 chr12 44162701 44162869 -100119620 - MER5A DNA MER1_type 0 178 4 32 26 0 0 chr12 44162927 44162966 -100119523 + AT_rich Low_complexity Low_complexity 1 39 0 299 272 37 25 chr12 44163512 44163593 -100118896 - MER5B DNA MER1_type -30 148 67 1629 188 13 17 chr12 44164046 44164344 -100118145 - AluJo SINE Alu -12 300 4 1437 152 32 24 chr12 44164346 44164679 -100117810 - L1P1 LINE L1 -464 5691 5352 228 260 73 21 chr12 44165766 44165862 -100116627 + MIR3 SINE MIR 87 187 -21 1390 144 130 40 chr12 44166040 44166317 -100116172 + AluJo SINE Alu 1 302 -10 215 395 151 26 chr12 44166335 44166606 -100115883 - L2 LINE L2 -36 3236 2932 1360 157 48 59 chr12 44166620 44166957 -100115532 - L1MA7 LINE L1 -1 6290 5958 1869 128 55 0 chr12 44168116 44168405 -100114084 - AluSq SINE Alu -8 305 1 308 174 0 0 chr12 44168496 44168542 -100113947 - Alu SINE Alu -255 47 2 2158 103 0 3 chr12 44168652 44168942 -100113547 + AluSx SINE Alu 12 300 -12 1619 180 6 38 chr12 44168966 44169283 -100113206 - AluJo SINE Alu -5 307 1 243 320 234 3 chr12 44169373 44169745 -100112744 + L2 LINE L2 1932 2389 -925 953 236 124 58 chr12 44171525 44172406 -100110083 - L1MC4 LINE L1 0 8042 6958 2163 128 7 0 chr12 44172406 44172703 -100109786 - AluSx SINE Alu -13 299 1 953 236 124 58 chr12 44172703 44172792 -100109697 - L1MC4 LINE L1 -1084 6958 6876 1423 181 40 11 chr12 44173382 44173659 -100108830 - AluJo SINE Alu -27 285 1 2000 147 0 16 chr12 44174173 44174486 -100108003 + AluJo SINE Alu 1 308 -4 725 194 75 5 chr12 44174920 44175106 -100107383 + MER105 DNA DNA 5 203 -1 1626 175 30 0 chr12 44175198 44175466 -100107023 - AluJo SINE Alu -19 293 18 208 227 0 27 chr12 44175506 44175581 -100106908 + CT-rich Low_complexity Low_complexity 4 76 0 892 206 18 0 chr12 44175585 44175750 -100106739 - FRAM SINE Alu -9 167 1 1592 151 87 36 chr12 44176078 44176435 -100106054 - THE1C LTR MaLR 0 375 1 1281 265 92 0 chr12 44176816 44177209 -100105280 - MLT1J LTR MaLR 0 511 83 8433 32 6 1 chr12 44177720 44179514 -100102975 - L1PA4 LINE L1 -3 6152 4354 5149 244 99 35 chr12 44179635 44181742 -100100747 - L1MC4a LINE L1 -263 7545 5304 498 219 44 0 chr12 44181738 44181852 -100100637 - L1MB7 LINE L1 0 6184 6066 * 1412 212 7 10 chr12 44182035 44182332 -100100157 - AluJo SINE Alu -16 296 1 1875 158 10 3 chr12 44182337 44182635 -100099854 - AluY SINE Alu -11 300 1 219 294 76 17 chr12 44182812 44182931 -100099558 - MIR3 SINE MIR -21 187 62 1526 152 32 24 chr12 44183994 44184327 -100098162 + L1M1 LINE L1 5352 5691 -464 1600 188 13 17 chr12 44184329 44184627 -100097862 + AluJo SINE Alu 4 300 -12 297 272 37 25 chr12 44185080 44185161 -100097328 + MER5B DNA MER1_type 67 148 -30 25 51 0 0 chr12 44185707 44185746 -100096743 + AT_rich Low_complexity Low_complexity 1 39 0 276 311 37 34 chr12 44185804 44185972 -100096517 + MER5A DNA MER1_type 4 178 0 1970 135 18 0 chr12 44186659 44186941 -100095548 + AluSx SINE Alu 2 288 -24 661 317 68 4 chr12 44186961 44187226 -100095263 + MLT1G3 LTR MaLR 21 302 -228 1973 145 0 19 chr12 44187572 44187890 -100094599 + AluJo SINE Alu 1 312 0 1188 161 24 15 chr12 44187976 44188181 -100094308 - AluJo SINE Alu -19 293 87 644 306 45 30 chr12 44188747 44189012 -100093477 + MLT1I LTR MaLR 102 370 -39 415 122 27 14 chr12 44189044 44189118 -100093371 - L1MB7 LINE L1 -51 6133 6059 * 1965 155 68 24 chr12 44189098 44189512 -100092977 + L1MB7 LINE L1 5618 6049 -135 387 191 21 64 chr12 44190247 44190341 -100092148 + L1MD2 LINE L1 6031 6120 -239 240 122 0 0 chr12 44190408 44190449 -100092040 + (CATA)n Simple_repeat Simple_repeat 2 42 0 1414 164 47 23 chr12 44190450 44190706 -100091783 - AluJb SINE Alu -48 264 3 439 134 0 0 chr12 44190800 44190867 -100091622 + AluSq/x SINE Alu 70 136 -176 2189 110 13 0 chr12 44190867 44191166 -100091323 + AluY SINE Alu 1 303 -8 1840 84 8 20 chr12 44191166 44191417 -100091072 + AluY SINE Alu 56 303 -8 1459 157 48 59 chr12 44192576 44192913 -100089576 + L1MA7 LINE L1 5958 6290 -1 204 395 151 26 chr12 44192927 44193198 -100089291 + L2 LINE L2 2932 3236 -36 1375 144 130 40 chr12 44193216 44193493 -100088996 - AluJo SINE Alu -10 302 1 1338 176 8 4 chr12 44193833 44194095 -100088394 - L1P LINE L1 -4421 1725 1463 2203 128 0 3 chr12 44194347 44194652 -100087837 + AluSx SINE Alu 5 308 -4 361 203 16 0 chr12 44194813 44194877 -100087612 + MIR SINE MIR 19 83 -179 23 0 0 0 chr12 44195200 44195223 -100087266 + AT_rich Low_complexity Low_complexity 1 23 0 26 74 0 0 chr12 44195625 44195679 -100086810 + AT_rich Low_complexity Low_complexity 1 54 0 387 206 271 0 chr12 44195968 44196075 -100086414 + MIR SINE MIR 126 261 -1 649 162 20 61 chr12 44197272 44197420 -100085069 - FLAM_C SINE Alu -1 142 1 1885 131 10 48 chr12 44198130 44198443 -100084046 + AluSx SINE Alu 3 303 -9 218 103 86 35 chr12 44198444 44198502 -100083987 + (TTAAA)n Simple_repeat Simple_repeat 1 61 0 262 327 37 47 chr12 44198795 44198902 -100083587 + L2 LINE L2 3155 3260 -12 2371 95 0 0 chr12 44199515 44199811 -100082678 + AluSx SINE Alu 1 296 -16 243 206 108 62 chr12 44200036 44200193 -100082296 - L1P LINE L1 -724 5427 5266 26 74 0 0 chr12 44200426 44200480 -100082009 + AT_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr12 44200884 44200906 -100081583 + AT_rich Low_complexity Low_complexity 1 22 0 396 221 110 73 chr12 44200915 44201169 -100081320 - MER5C DNA MER1_type 0 324 1 25 83 0 0 chr12 44201369 44201429 -100081060 + AT_rich Low_complexity Low_complexity 1 60 0 1781 158 14 7 chr12 44201523 44201814 -100080675 - AluJb SINE Alu -18 294 2 398 108 15 0 chr12 44202568 44202633 -100079856 + (TA)n Simple_repeat Simple_repeat 2 67 0 230 250 0 0 chr12 44202656 44202708 -100079781 + L1M4 LINE L1 4489 4540 -1606 410 211 48 95 chr12 44202966 44203113 -100079376 - MIR SINE MIR 0 262 123 613 226 23 115 chr12 44203982 44204331 -100078158 - L1MC4 LINE L1 0 8042 7726 * 5083 246 99 34 chr12 44204323 44206428 -100076061 - L1MC4a LINE L1 -263 7545 5304 498 219 44 0 chr12 44206424 44206538 -100075951 - L1MB7 LINE L1 0 6184 6066 * 1292 214 7 11 chr12 44206721 44206997 -100075492 - AluJo SINE Alu -15 297 23 7744 21 0 0 chr12 44206997 44208308 -100074181 + L1PA2 LINE L1 4843 6153 -2 57 0 0 0 chr12 44208526 44208583 -100073906 + AT_rich Low_complexity Low_complexity 1 57 0 1452 168 67 15 chr12 44208583 44208851 -100073638 - AluJo SINE Alu -30 282 1 2595 52 0 0 chr12 44209622 44209929 -100072560 - AluY SINE Alu -4 307 1 562 257 81 40 chr12 44209972 44210194 -100072295 - L3 LINE CR1 -109 1468 1238 1795 180 81 128 chr12 44210557 44211320 -100071169 + LTR8A LTR ERV1 1 727 0 221 342 25 0 chr12 44211445 44211524 -100070965 - L2 LINE L2 -1 3271 3191 7118 117 23 2 chr12 44212204 44213642 -100068847 - L1MA3 LINE L1 0 6305 4833 1533 191 0 14 chr12 44214066 44214359 -100068130 + AluSx SINE Alu 3 291 -21 465 279 19 39 chr12 44214999 44215153 -100067336 + L2 LINE L2 3161 3311 -2 180 0 0 0 chr12 44216184 44216204 -100066285 + (A)n Simple_repeat Simple_repeat 1 20 0 976 178 0 35 chr12 44217203 44217377 -100065112 - AluJb SINE Alu -10 302 135 12400 56 3 9 chr12 44217806 44219395 -100063094 + L1PA4 LINE L1 3 1581 -4565 21688 33 1 0 chr12 44219395 44222804 -100059685 + L1PA4 LINE L1 2741 6152 -3 26 30 0 0 chr12 44222804 44222837 -100059652 + AT_rich Low_complexity Low_complexity 1 33 0 2000 115 66 36 chr12 44223156 44223520 -100058969 - THE1C LTR MaLR 0 375 1 334 134 45 0 chr12 44224317 44224384 -100058105 + MLT1J LTR MaLR 439 508 -3 2337 70 7 3 chr12 44224803 44225104 -100057385 - AluY SINE Alu -9 302 1 316 249 34 124 chr12 44225738 44225915 -100056574 - L2 LINE L2 -52 3261 3101 1227 233 113 55 chr12 44225965 44226462 -100056027 - MLT1H1 LTR MaLR 0 577 20 2659 252 241 41 chr12 44226476 44227023 -100055466 - L2 LINE L2 -266 3047 2611 2081 109 26 7 chr12 44227023 44227325 -100055164 + AluSx SINE Alu 1 308 -4 2659 252 241 41 chr12 44227325 44228247 -100054242 - L2 LINE L2 -702 2611 1271 1933 116 52 68 chr12 44228247 44228628 -100053861 + THE1C LTR MaLR 1 375 0 2659 252 241 41 chr12 44228628 44228677 -100053812 - L2 LINE L2 -2042 1271 1233 3297 141 45 14 chr12 44228686 44229515 -100052974 + MER49 LTR ERV1 16 908 -15 1982 224 102 37 chr12 44229538 44229726 -100052763 - L2 LINE L2 -2075 1239 1065 1821 145 0 43 chr12 44229726 44230030 -100052459 - AluJb SINE Alu -19 293 3 1982 224 102 37 chr12 44230030 44230439 -100052050 - L2 LINE L2 -2249 1065 603 12494 35 4 2 chr12 44231076 44232694 -100049795 - L1P LINE L1 -3051 3095 1476 198 0 0 0 chr12 44232870 44232892 -100049597 + (A)n Simple_repeat Simple_repeat 1 22 0 1927 123 18 0 chr12 44233098 44233374 -100049115 + AluSx SINE Alu 1 281 -31 279 79 0 0 chr12 44233395 44233433 -100049056 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1881 99 33 59 chr12 44233861 44234164 -100048325 + AluSx SINE Alu 1 295 -17 1083 146 6 12 chr12 44234164 44234328 -100048161 + AluJb SINE Alu 137 299 -13 24 53 0 0 chr12 44234395 44234433 -100048056 + AT_rich Low_complexity Low_complexity 1 38 0 2178 125 51 14 chr12 44234456 44234808 -100047681 + MLT1A1 LTR MaLR 1 365 0 2445 80 0 0 chr12 44235013 44235312 -100047177 + AluY SINE Alu 1 299 -12 353 322 33 16 chr12 44235368 44235489 -100047000 - MER5A DNA MER1_type -6 183 61 270 336 16 8 chr12 44236217 44236339 -100046150 + MLT1K LTR MaLR 141 263 -325 1062 160 59 8 chr12 44236572 44236809 -100045680 + L1MA9 LINE L1 6064 6312 0 342 292 55 31 chr12 44236815 44236952 -100045537 - MIR SINE MIR -65 143 14 1548 173 27 50 chr12 44237453 44237753 -100044736 - AluJo SINE Alu -13 299 7 21 36 0 0 chr12 44238149 44238177 -100044312 + AT_rich Low_complexity Low_complexity 1 28 0 222 91 0 0 chr12 44239101 44239134 -100043355 + (CA)n Simple_repeat Simple_repeat 2 34 0 370 294 81 113 chr12 44239439 44240057 -100042432 + L1M2 LINE L1 785 1382 -5467 509 290 74 3 chr12 44240202 44240402 -100042087 + MIR SINE MIR 6 217 -45 203 313 30 0 chr12 44240704 44240771 -100041718 - L2 LINE L2 -3 3310 3242 408 336 41 41 chr12 44241034 44241278 -100041211 - L2 LINE L2 -440 2874 2631 258 321 0 12 chr12 44241603 44241684 -100040805 - L2 LINE L2 0 3272 3193 2357 74 3 19 chr12 44242699 44243009 -100039480 - AluSc SINE Alu -4 305 1 792 147 7 29 chr12 44243254 44243390 -100039099 + FLAM_C SINE Alu 1 133 0 243 79 0 0 chr12 44243454 44243492 -100038997 + (A)n Simple_repeat Simple_repeat 1 38 0 26 0 0 0 chr12 44244123 44244149 -100038340 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr12 44244358 44244380 -100038109 + AT_rich Low_complexity Low_complexity 1 22 0 1995 165 0 0 chr12 44244385 44244694 -100037795 + AluJb SINE Alu 1 309 -3 983 120 0 0 chr12 44244767 44244892 -100037597 + AluSq/x SINE Alu 1 125 -187 1558 110 4 9 chr12 44244892 44245120 -100037369 + AluSp SINE Alu 86 312 -1 1348 96 46 14 chr12 44245177 44245396 -100037093 + L1MA1 LINE L1 6069 6294 -8 336 161 0 0 chr12 44245429 44245491 -100036998 + GA-rich Low_complexity Low_complexity 3 64 0 31 44 0 0 chr12 44245671 44245716 -100036773 + AT_rich Low_complexity Low_complexity 1 45 0 2121 84 0 18 chr12 44245830 44246114 -100036375 + AluSc SINE Alu 31 309 0 6630 112 34 15 chr12 44246199 44246918 -100035571 + L1MA2 LINE L1 4092 4796 -1508 2102 130 13 0 chr12 44246918 44247225 -100035264 + AluSx SINE Alu 1 311 -1 6630 112 34 15 chr12 44247225 44248673 -100033816 + L1MA2 LINE L1 4796 6304 0 226 211 11 67 chr12 44249148 44249238 -100033251 + A-rich Low_complexity Low_complexity 6 90 0 748 174 0 0 chr12 44249259 44249380 -100033109 + AluJb SINE Alu 13 133 -179 2306 99 0 3 chr12 44249538 44249842 -100032647 - AluSx SINE Alu -9 303 1 2505 127 50 10 chr12 44250723 44251139 -100031350 - Tigger2a DNA MER2_type 0 434 2 1411 205 101 24 chr12 44252162 44252586 -100029903 - MSTB2 LTR MaLR 0 457 1 192 77 0 0 chr12 44252886 44252912 -100029577 + (TA)n Simple_repeat Simple_repeat 2 27 0 635 158 97 0 chr12 44252918 44253032 -100029457 - AluJb SINE Alu -187 125 1 440 239 72 43 chr12 44253545 44253683 -100028806 - MIR SINE MIR -2 260 119 207 0 0 0 chr12 44256457 44256480 -100026009 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 211 303 0 0 chr12 44256743 44256809 -100025680 + T-rich Low_complexity Low_complexity 1 66 0 205 226 113 0 chr12 44257463 44257516 -100024973 - L2 LINE L2 0 3313 3255 889 187 70 12 chr12 44258113 44258284 -100024205 - MER5A DNA MER1_type -2 187 7 1809 141 57 20 chr12 44259902 44260201 -100022288 + AluJb SINE Alu 3 312 0 352 253 95 0 chr12 44260203 44260298 -100022191 - L2 LINE L2 -4 3309 3206 341 258 17 8 chr12 44260442 44260562 -100021927 - Looper DNA T2_type -110 1448 1328 2282 98 0 25 chr12 44260566 44260883 -100021606 - AluY SINE Alu -2 309 1 3276 176 103 33 chr12 44260905 44260989 -100021500 - Looper DNA T2_type -236 1322 1245 320 73 36 0 chr12 44260989 44261044 -100021445 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 2023 101 25 7 chr12 44261047 44261325 -100021164 - AluSx SINE Alu -29 283 1 3276 176 103 33 chr12 44261325 44262147 -100020342 - Looper DNA T2_type -314 1244 239 2203 74 0 0 chr12 44262147 44262432 -100020057 + L1PA8 LINE L1 5888 6172 0 3276 176 103 33 chr12 44262432 44262664 -100019825 - Looper DNA T2_type -1319 239 25 925 148 59 35 chr12 44262836 44263005 -100019484 + AluJo SINE Alu 1 173 -139 2230 121 0 10 chr12 44263288 44263594 -100018895 - AluSq SINE Alu -10 303 1 45 45 0 0 chr12 44263918 44263984 -100018505 + AT_rich Low_complexity Low_complexity 1 66 0 401 275 174 54 chr12 44264079 44264522 -100017967 + L2 LINE L2 1663 2158 -1156 2033 130 10 0 chr12 44264525 44264825 -100017664 - AluJb SINE Alu -9 303 1 1955 173 0 3 chr12 44264971 44265284 -100017205 - AluJo SINE Alu 0 312 1 227 286 184 0 chr12 44265342 44265440 -100017049 + L2 LINE L2 3197 3312 -1 990 160 11 139 chr12 44265640 44265927 -100016562 + AluYb8 SINE Alu 1 250 -68 2110 127 7 0 chr12 44266103 44266403 -100016086 - AluSx SINE Alu -10 302 1 974 175 0 28 chr12 44266455 44266632 -100015857 + FAM SINE Alu 2 173 -2 1894 155 0 33 chr12 44266784 44267087 -100015402 + AluJb SINE Alu 1 293 -19 23 0 0 0 chr12 44267422 44267445 -100015044 + AT_rich Low_complexity Low_complexity 1 23 0 1854 188 5 25 chr12 44267747 44268145 -100014344 + L1MB8 LINE L1 5640 6029 -149 354 80 0 0 chr12 44268145 44268195 -100014294 + (GA)n Simple_repeat Simple_repeat 2 51 0 766 195 8 0 chr12 44268223 44268351 -100014138 - FRAM SINE Alu -30 146 18 361 194 0 122 chr12 44268822 44268920 -100013569 - L2 LINE L2 0 3313 3228 1813 265 133 21 chr12 44268951 44269656 -100012833 + L2 LINE L2 1380 2163 -1151 330 269 43 21 chr12 44269667 44269760 -100012729 + MER5A DNA MER1_type 1 95 -94 228 286 17 59 chr12 44269718 44269837 -100012652 + L2 LINE L2 2108 2221 -1093 * 227 193 0 70 chr12 44269837 44269894 -100012595 - MER5B DNA MER1_type 0 178 126 1971 206 53 40 chr12 44270109 44270658 -100011831 + L1ME1 LINE L1 5611 6166 0 751 152 55 48 chr12 44270708 44270873 -100011616 + FRAM SINE Alu 1 166 0 209 218 269 13 chr12 44270905 44270983 -100011506 + MER5B DNA MER1_type 81 178 0 355 213 75 0 chr12 44270983 44271077 -100011412 + L2 LINE L2 2215 2315 -999 1540 145 4 4 chr12 44271077 44271305 -100011184 + AluSx SINE Alu 1 228 -84 225 81 0 0 chr12 44271305 44271342 -100011147 + AluSx SINE Alu 263 299 -2 1157 155 6 0 chr12 44271359 44271533 -100010956 - AluSx SINE Alu -137 175 1 759 255 147 95 chr12 44271541 44271792 -100010697 + L2 LINE L2 2357 2594 -719 2174 116 0 17 chr12 44271792 44272094 -100010395 + AluSq SINE Alu 1 297 -16 759 255 147 95 chr12 44272094 44272364 -100010125 + L2 LINE L2 2594 2940 -373 1456 180 29 80 chr12 44272364 44272775 -100009714 - MLT1B LTR MaLR 0 390 1 759 255 147 95 chr12 44272775 44272895 -100009594 + L2 LINE L2 2940 3052 -261 365 202 52 165 chr12 44272945 44273193 -100009296 + L2 LINE L2 3039 3258 -55 554 276 18 18 chr12 44273329 44273492 -100008997 + MER5B DNA MER1_type 1 163 -15 29 0 0 0 chr12 44273725 44273754 -100008735 + AT_rich Low_complexity Low_complexity 1 29 0 320 125 0 36 chr12 44273949 44274005 -100008484 - MER5B DNA MER1_type 0 178 125 954 183 0 24 chr12 44274016 44274185 -100008304 + FRAM SINE Alu 1 162 -14 299 255 19 85 chr12 44274191 44274297 -100008192 - MER5B DNA MER1_type -60 118 20 1957 144 0 0 chr12 44274300 44274584 -100007905 + AluSx SINE Alu 1 284 -28 1682 151 23 0 chr12 44274668 44274926 -100007563 + AluJb SINE Alu 49 312 0 1477 234 120 38 chr12 44275199 44275747 -100006742 + MLT1E LTR MaLR 1 593 0 2150 123 10 3 chr12 44275778 44276079 -100006410 + AluSx SINE Alu 1 303 -9 9328 112 45 54 chr12 44278000 44279435 -100003054 + Tigger1 DNA MER2_type 4 1450 -968 2175 122 0 0 chr12 44279435 44279722 -100002767 - AluSx SINE Alu -25 287 1 9328 112 45 54 chr12 44279722 44280007 -100002482 + Tigger1 DNA MER2_type 1450 1736 -682 1725 160 4 7 chr12 44280007 44280288 -100002201 + AluSx SINE Alu 1 280 -32 273 29 0 0 chr12 44280289 44280323 -100002166 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 9328 112 45 54 chr12 44280323 44280979 -100001510 + Tigger1 DNA MER2_type 1735 2386 -32 27 0 0 0 chr12 44280994 44281021 -100001468 + AT_rich Low_complexity Low_complexity 1 27 0 2032 119 37 3 chr12 44281030 44281324 -100001165 + AluSx SINE Alu 1 304 -8 741 147 42 21 chr12 44281325 44281501 -100000988 + AluSg/x SINE Alu 135 313 0 1805 140 7 4 chr12 44281548 44281820 -100000669 + AluSq SINE Alu 41 313 0 221 167 0 0 chr12 44282239 44282281 -100000208 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1700 154 4 15 chr12 44282290 44282550 -99999939 - AluJo SINE Alu -33 279 23 356 229 29 0 chr12 44282662 44282732 -99999757 + MIR SINE MIR 6 77 -185 970 206 36 7 chr12 44282875 44283268 -99999221 + MLT1F LTR MaLR 45 590 -3 2124 140 3 3 chr12 44283490 44283798 -99998691 - AluSx SINE Alu -4 308 1 25 0 0 0 chr12 44283800 44283825 -99998664 + AT_rich Low_complexity Low_complexity 1 25 0 401 295 31 132 chr12 44283906 44284262 -99998227 - L2 LINE L2 -19 3253 2934 213 221 58 39 chr12 44284687 44284791 -99997698 + (TATATG)n Simple_repeat Simple_repeat 1 106 0 21 71 0 0 chr12 44284842 44284884 -99997605 + AT_rich Low_complexity Low_complexity 1 42 0 1571 204 6 16 chr12 44285174 44285487 -99997002 + AluJb SINE Alu 2 311 -1 325 291 67 8 chr12 44285575 44285709 -99996780 - L1M4 LINE L1 -2932 3214 3073 369 269 71 46 chr12 44286410 44286607 -99995882 - L1M4 LINE L1 -3741 2405 2204 291 279 16 0 chr12 44286744 44286805 -99995684 - L2 LINE L2 -23 3249 3188 1555 119 190 8 chr12 44286918 44287171 -99995318 + AluSx SINE Alu 1 299 -13 383 319 155 53 chr12 44287200 44287338 -99995151 - L2 LINE L2 -404 2910 2788 1691 180 0 3 chr12 44287338 44287647 -99994842 + AluJo SINE Alu 1 308 0 383 319 155 53 chr12 44287647 44287868 -99994621 - L2 LINE L2 -526 2788 2513 4320 142 53 39 chr12 44287944 44288144 -99994345 + Tigger3b DNA MER2_type 2 198 -2830 2198 92 0 16 chr12 44288144 44288447 -99994042 + AluSx SINE Alu 1 298 -14 4320 142 53 39 chr12 44288447 44288619 -99993870 + Tigger3b DNA MER2_type 198 366 -2662 1757 175 14 14 chr12 44288619 44288916 -99993573 - AluJb SINE Alu -15 297 1 4320 142 53 39 chr12 44288916 44289441 -99993048 + Tigger3b DNA MER2_type 366 913 -318 1746 141 0 0 chr12 44289474 44289723 -99992766 + AluSq SINE Alu 1 249 -64 208 329 0 41 chr12 44289822 44289895 -99992594 - L2 LINE L2 0 3272 3203 244 211 88 0 chr12 44289938 44289995 -99992494 - L2 LINE L2 -951 2363 2302 306 373 141 28 chr12 44290731 44291050 -99991439 - L2 LINE L2 -2 3270 2916 2286 103 0 16 chr12 44291052 44291364 -99991125 + AluSx SINE Alu 1 307 -5 227 325 0 0 chr12 44291660 44291737 -99990752 - Charlie8 DNA MER1_type 0 2417 2341 304 288 65 20 chr12 44291770 44291923 -99990566 - Charlie8 DNA MER1_type -2212 205 46 191 208 299 13 chr12 44292098 44292175 -99990314 + L2 LINE L2 3164 3262 -10 1868 164 0 10 chr12 44293413 44293712 -99988777 + AluJb SINE Alu 1 296 -16 655 133 76 0 chr12 44293957 44294093 -99988396 + MER33 DNA MER1_type 1 132 -86 245 368 68 8 chr12 44295158 44295275 -99987214 - L2 LINE L2 -2 3270 3147 727 244 27 80 chr12 44295923 44296148 -99986341 + MIR SINE MIR 28 240 -22 241 301 136 30 chr12 44296209 44296408 -99986081 - L1ME LINE L1 -357 5805 5586 271 223 139 25 chr12 44296426 44296614 -99985875 - L1ME LINE L1 -696 5466 5255 201 74 0 0 chr12 44296695 44296722 -99985767 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1691 172 0 4 chr12 44296723 44296985 -99985504 - AluSx SINE Alu -51 261 1 865 259 68 20 chr12 44297384 44297735 -99984754 - L1ME3 LINE L1 0 6145 5778 2212 115 7 0 chr12 44297751 44298047 -99984442 - AluSq SINE Alu -13 300 3 449 331 55 48 chr12 44298054 44298347 -99984142 - L1ME3 LINE L1 -1388 4741 4447 373 301 59 54 chr12 44298554 44298757 -99983732 - L1ME3 LINE L1 -2045 4084 3881 680 172 26 33 chr12 44299055 44299206 -99983283 + FAM SINE Alu 1 48 -1 921 207 25 0 chr12 44299218 44299421 -99983068 + L1MB7 LINE L1 5441 5648 -536 1454 170 40 7 chr12 44299422 44299698 -99982791 - MER2 DNA MER2_type -1 344 60 1548 177 123 29 chr12 44299729 44300175 -99982314 + L1MB7 LINE L1 5697 6184 0 25 31 0 0 chr12 44300294 44300326 -99982163 + AT_rich Low_complexity Low_complexity 1 32 0 2393 96 0 0 chr12 44300483 44300785 -99981704 - AluSg1 SINE Alu -7 302 1 415 273 88 4 chr12 44300793 44301031 -99981458 - L1ME3 LINE L1 -2979 3150 2893 604 223 61 58 chr12 44301034 44301344 -99981145 - L1ME3 LINE L1 -4914 1205 895 180 0 0 0 chr12 44301410 44301430 -99981059 + (A)n Simple_repeat Simple_repeat 1 20 0 2209 114 0 0 chr12 44301439 44301736 -99980753 + AluSx SINE Alu 1 297 -15 213 261 0 0 chr12 44301909 44301955 -99980534 - MIR SINE MIR -111 151 106 330 162 103 60 chr12 44301989 44302106 -99980383 - L1MC4 LINE L1 -15 8027 7906 26 30 0 0 chr12 44302573 44302606 -99979883 + AT_rich Low_complexity Low_complexity 1 33 0 2483 54 3 0 chr12 44302723 44303021 -99979468 + AluY SINE Alu 1 299 -12 30 0 0 0 chr12 44303198 44303228 -99979261 + AT_rich Low_complexity Low_complexity 1 30 0 1942 135 14 7 chr12 44303258 44303539 -99978950 + AluSx SINE Alu 1 283 -29 207 0 0 0 chr12 44303557 44303580 -99978909 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 2049 162 0 0 chr12 44304394 44304702 -99977787 + AluJb SINE Alu 1 308 -4 2316 95 3 0 chr12 44304915 44305210 -99977279 - AluSp SINE Alu -17 296 1 2322 114 0 0 chr12 44306257 44306564 -99975925 + AluSx SINE Alu 1 307 -5 2173 108 7 26 chr12 44306569 44306876 -99975613 + AluSx SINE Alu 3 303 -9 1978 125 50 0 chr12 44306879 44307159 -99975330 + AluSx SINE Alu 1 294 -18 418 88 0 0 chr12 44308174 44308231 -99974258 + Alu SINE Alu 1 57 -252 437 232 127 57 chr12 44308231 44308464 -99974025 + MLT1F1 LTR MaLR 184 419 -174 21 0 0 0 chr12 44308507 44308528 -99973961 + AT_rich Low_complexity Low_complexity 1 21 0 274 298 190 29 chr12 44309059 44309396 -99973093 + L2 LINE L2 2589 3010 -303 1815 167 7 0 chr12 44309396 44309684 -99972805 - AluJb SINE Alu -22 290 1 274 298 190 29 chr12 44309684 44309757 -99972732 + L2 LINE L2 3010 3070 -243 2024 123 0 0 chr12 44309834 44310111 -99972378 + AluSx SINE Alu 1 277 -35 204 40 0 0 chr12 44310123 44310148 -99972341 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 231 303 101 0 chr12 44310148 44310247 -99972242 + L2 LINE L2 3204 3312 -1 743 156 33 0 chr12 44310401 44310523 -99971966 + FLAM_C SINE Alu 1 126 -17 1955 108 17 24 chr12 44310753 44311091 -99971398 + AluSx SINE Alu 1 336 0 671 322 53 73 chr12 44311497 44312195 -99970294 + L2 LINE L2 1966 2649 -665 387 0 0 0 chr12 44313298 44313341 -99969148 + (CA)n Simple_repeat Simple_repeat 2 44 0 1886 145 84 5 chr12 44313348 44313793 -99968696 + Ricksha DNA DNA 2803 3245 -13 250 355 0 0 chr12 44314648 44314755 -99967734 + (CA)n Simple_repeat Simple_repeat 2 108 0 746 232 140 0 chr12 44314852 44315016 -99967473 - MER5A DNA MER1_type 0 189 3 1726 161 50 11 chr12 44316403 44316682 -99965807 + AluJo SINE Alu 1 290 -22 200 204 0 45 chr12 44317083 44317127 -99965362 + L3 LINE CR1 1535 1576 -1 309 225 138 0 chr12 44317926 44318006 -99964483 + MIR SINE MIR 172 262 0 285 128 0 0 chr12 44318440 44318487 -99964002 + (CA)n Simple_repeat Simple_repeat 2 48 0 886 115 8 8 chr12 44318639 44318769 -99963720 - AluJo SINE Alu -178 134 5 2878 51 0 0 chr12 44318799 44319173 -99963316 + L1PA8 LINE L1 5804 6177 0 6901 49 14 17 chr12 44319491 44321253 -99961236 - L1PA7 LINE L1 -1 6153 4390 1760 181 3 7 chr12 44321495 44321794 -99960695 + AluJo SINE Alu 3 300 -12 321 306 48 75 chr12 44321979 44322273 -99960216 - L1M2 LINE L1 -5968 881 596 2608 89 28 83 chr12 44322315 44323079 -99959410 + SVA Other Other 393 868 -520 1242 88 16 107 chr12 44323103 44323533 -99958956 + SVA Other Other 476 866 -520 6575 58 14 57 chr12 44323550 44324547 -99957942 + SVA Other Other 433 1386 0 250 337 109 0 chr12 44324547 44324633 -99957856 - L2 LINE L2 -16 3256 3161 1755 156 87 3 chr12 44324697 44325018 -99957471 - MER7A DNA MER2_type 0 346 1 2151 122 7 0 chr12 44325099 44325429 -99957060 + AluSc SINE Alu 11 342 0 255 379 0 21 chr12 44325473 44325568 -99956921 - L2 LINE L2 -455 2859 2767 5394 176 89 25 chr12 44326162 44327528 -99954961 - Charlie1a DNA MER1_type 0 1455 2 283 301 72 0 chr12 44328135 44328218 -99954271 + L2 LINE L2 3184 3272 0 1979 145 0 3 chr12 44328630 44328920 -99953569 - AluJo SINE Alu -18 294 6 2222 109 0 31 chr12 44329001 44329354 -99953135 + AluSx SINE Alu 1 343 0 579 214 28 0 chr12 44329487 44329632 -99952857 + L1PA16 LINE L1 6009 6157 -9 231 360 30 51 chr12 44329715 44329828 -99952661 + L3b LINE CR1 1306 1415 -168 1869 182 0 0 chr12 44329828 44330124 -99952365 + AluJb SINE Alu 11 306 -6 231 360 30 51 chr12 44330124 44330207 -99952282 + L3b LINE CR1 1415 1498 -85 21 57 0 0 chr12 44332670 44332705 -99949784 + GC_rich Low_complexity Low_complexity 1 35 0 212 203 0 34 chr12 44332896 44332955 -99949534 + C-rich Low_complexity Low_complexity 3 59 0 230 270 14 0 chr12 44333020 44333094 -99949395 + (CCG)n Simple_repeat Simple_repeat 3 77 0 22 0 0 0 chr12 44333102 44333124 -99949365 + GC_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 44333239 44333261 -99949228 + GC_rich Low_complexity Low_complexity 1 22 0 203 171 24 0 chr12 44333370 44333411 -99949078 + G-rich Low_complexity Low_complexity 4 45 0 26 82 0 0 chr12 44333568 44333629 -99948860 + GC_rich Low_complexity Low_complexity 1 61 0 270 335 73 22 chr12 44333977 44334141 -99948348 - MIR SINE MIR -80 128 4 186 352 39 17 chr12 44334283 44334462 -99948027 + L2 LINE L2 2607 2789 -525 2140 103 0 10 chr12 44334839 44335140 -99947349 + AluSx SINE Alu 1 298 -14 518 189 0 0 chr12 44335243 44335333 -99947156 - Tigger5 DNA MER2_type 0 2323 2234 244 51 26 26 chr12 44335331 44335370 -99947119 - Tigger5 DNA MER2_type -33 2290 2252 * 326 93 0 0 chr12 44335340 44335383 -99947106 - Tigger5 DNA MER2_type -2268 55 13 207 305 168 38 chr12 44335385 44335516 -99946973 - MIR3 SINE MIR -51 157 10 186 241 0 60 chr12 44335713 44335796 -99946693 + MIR3 SINE MIR 125 202 -6 386 155 61 142 chr12 44335942 44336090 -99946399 + L2 LINE L2 3178 3313 0 698 138 0 9 chr12 44336110 44336219 -99946270 + FLAM_A SINE Alu 12 119 -23 279 71 0 0 chr12 44336791 44336833 -99945656 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 768 214 14 0 chr12 44336846 44336991 -99945498 - FRAM SINE Alu -19 147 1 2076 149 0 0 chr12 44337027 44337329 -99945160 + AluJb SINE Alu 10 311 -1 1649 147 0 75 chr12 44337349 44337557 -99944932 + 7SLRNA srpRNA srpRNA 29 208 -112 2281 106 0 7 chr12 44337557 44337858 -99944631 + AluSx SINE Alu 2 300 -12 1649 147 0 75 chr12 44337858 44337956 -99944533 + 7SLRNA srpRNA srpRNA 208 312 -8 2007 148 0 13 chr12 44338149 44338454 -99944035 + AluJo SINE Alu 1 301 -11 2132 114 46 58 chr12 44338815 44338931 -99943558 - MLT1B LTR MaLR -2 388 272 2351 98 10 7 chr12 44338931 44339237 -99943252 + AluY SINE Alu 1 307 -4 2132 114 46 58 chr12 44339237 44339513 -99942976 - MLT1B LTR MaLR -118 272 1 1086 259 26 32 chr12 44339586 44339866 -99942623 - MER46C DNA MER2_type 0 338 59 2563 40 0 7 chr12 44339866 44340162 -99942327 + AluY SINE Alu 1 294 -17 1086 259 26 32 chr12 44340162 44340221 -99942268 - MER46C DNA MER2_type -279 59 1 732 279 57 3 chr12 44340260 44340558 -99941931 + L1ME4a LINE L1 5599 5912 -209 2496 84 0 3 chr12 44340633 44340943 -99941546 - AluSq SINE Alu -4 309 1 1989 142 0 10 chr12 44340943 44341245 -99941244 - AluJb SINE Alu -13 299 1 667 197 184 71 chr12 44341627 44341847 -99940642 - LTR50 LTR ERVL -354 441 247 2224 103 3 17 chr12 44341847 44342148 -99940341 + AluSx SINE Alu 1 297 -15 667 197 184 71 chr12 44342148 44342307 -99940182 - LTR50 LTR ERVL -548 247 19 1570 283 70 45 chr12 44342557 44342976 -99939513 - ERVL LTR ERVL -236 5528 5082 5198 112 16 0 chr12 44342976 44343728 -99938761 - L1PA11 LINE L1 0 6174 5411 1570 283 70 45 chr12 44343728 44344023 -99938466 - ERVL LTR ERVL -682 5082 4796 35711 77 11 8 chr12 44344023 44349687 -99932802 - L1PA6 LINE L1 -1 6468 786 586 128 12 0 chr12 44349688 44349774 -99932715 - L1PA6 LINE L1 -6365 96 10 2321 121 0 0 chr12 44349786 44350092 -99932397 - AluSx SINE Alu -6 306 1 5105 272 50 21 chr12 44350092 44351583 -99930906 - ERVL LTR ERVL -958 4806 3273 2341 91 7 0 chr12 44351740 44352036 -99930453 + AluSq SINE Alu 1 298 -15 2131 108 3 7 chr12 44352044 44352354 -99930135 + AluSx SINE Alu 1 309 0 203 296 11 51 chr12 44352428 44352604 -99929885 + T-rich Low_complexity Low_complexity 2 170 0 621 147 211 0 chr12 44353554 44353663 -99928826 - AluJb SINE Alu -179 133 2 432 0 0 0 chr12 44353688 44353736 -99928753 + (TA)n Simple_repeat Simple_repeat 2 49 0 1634 147 30 53 chr12 44353742 44354042 -99928447 - AluSx SINE Alu -19 293 1 39 0 0 0 chr12 44354044 44354083 -99928406 + AT_rich Low_complexity Low_complexity 1 39 0 2635 146 18 33 chr12 44354132 44354580 -99927909 - MER31A LTR ERV1 -4 481 39 2660 33 3 0 chr12 44354580 44354884 -99927605 + AluY SINE Alu 1 305 -6 2635 146 18 33 chr12 44354884 44354923 -99927566 - MER31A LTR ERV1 -446 39 1 790 225 28 6 chr12 44354923 44355105 -99927384 + MIR SINE MIR 39 224 -38 943 189 6 6 chr12 44355106 44355286 -99927203 + AluSg/x SINE Alu 131 310 0 321 169 0 0 chr12 44355286 44355345 -99927144 + GA-rich Low_complexity Low_complexity 4 62 0 552 221 39 0 chr12 44355413 44355540 -99926949 + MIR SINE MIR 29 160 -102 673 120 0 0 chr12 44355541 44355641 -99926848 + AluSg/x SINE Alu 204 303 -7 2043 138 3 7 chr12 44355914 44356219 -99926270 + AluSx SINE Alu 1 304 -8 1834 158 7 7 chr12 44356254 44356546 -99925943 - AluJb SINE Alu -20 292 1 252 0 0 0 chr12 44356678 44356706 -99925783 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 1311 14 0 0 chr12 44356706 44356853 -99925636 - L1PA3 LINE L1 -16 6139 5993 363 296 0 0 chr12 44356868 44356976 -99925513 + MIR3 SINE MIR 101 208 0 234 0 0 0 chr12 44357302 44357328 -99925161 + (CA)n Simple_repeat Simple_repeat 2 27 0 3800 216 30 9 chr12 44358080 44358919 -99923570 - L1ME1 LINE L1 -18 6148 5293 1813 173 35 42 chr12 44358938 44359338 -99923151 - L1MB4 LINE L1 -6 6174 5778 * 2710 229 44 14 chr12 44359331 44359384 -99923105 - L1ME1 LINE L1 -851 5295 5245 252 0 0 0 chr12 44359384 44359412 -99923077 + (TA)n Simple_repeat Simple_repeat 2 29 0 1768 181 10 3 chr12 44359412 44359710 -99922779 - AluJb SINE Alu -9 303 4 2710 229 44 14 chr12 44359710 44360384 -99922105 - L1ME1 LINE L1 -900 5246 4545 3453 117 35 36 chr12 44360704 44361278 -99921211 - L1MB3 LINE L1 -1 6182 5608 2224 117 3 0 chr12 44361278 44361578 -99920911 - AluSx SINE Alu -11 301 1 3453 117 35 36 chr12 44361578 44361610 -99920879 - L1MB3 LINE L1 -575 5608 5577 7157 160 133 26 chr12 44361797 44363295 -99919194 - MER52A LTR ERV1 0 1755 1 2239 116 0 13 chr12 44363387 44363698 -99918791 - AluSx SINE Alu -5 307 1 26 0 0 0 chr12 44363700 44363726 -99918763 + AT_rich Low_complexity Low_complexity 1 26 0 299 125 0 0 chr12 44363878 44363918 -99918571 + Alu SINE Alu 1 40 -260 1049 128 20 0 chr12 44363918 44364066 -99918423 - AluJb SINE Alu -161 151 1 2194 130 6 12 chr12 44364467 44364835 -99917654 + L1PA16 LINE L1 5806 6171 0 869 173 39 0 chr12 44364844 44365000 -99917489 + MLT1A1 LTR MaLR 147 308 -57 2130 137 0 7 chr12 44365012 44365319 -99917170 - AluSx SINE Alu -7 305 1 262 323 10 21 chr12 44365390 44365486 -99917003 + MLT1L LTR MaLR 194 288 -327 2202 124 3 0 chr12 44365499 44365797 -99916692 + AluSx SINE Alu 1 299 -13 404 310 82 16 chr12 44365844 44366028 -99916461 + MLT1J LTR MaLR 224 419 -92 2221 105 3 22 chr12 44366523 44366838 -99915651 - AluSq SINE Alu -4 309 1 276 83 0 50 chr12 44366840 44366900 -99915589 + (TCCC)n Simple_repeat Simple_repeat 1 57 0 1565 157 6 83 chr12 44366900 44367212 -99915277 - AluJb SINE Alu -24 288 1 2097 131 3 0 chr12 44367445 44367742 -99914747 - AluSx SINE Alu -14 298 1 8780 113 106 66 chr12 44367749 44369380 -99913109 - pTR5 LTR ERV1 0 2438 743 22 0 0 0 chr12 44369470 44369492 -99912997 + AT_rich Low_complexity Low_complexity 1 22 0 1717 199 27 66 chr12 44369555 44369685 -99912804 - L1ME1 LINE L1 -4 6162 6028 2435 67 0 17 chr12 44369685 44369985 -99912504 + AluY SINE Alu 1 295 -16 1717 199 27 66 chr12 44369985 44370166 -99912323 - L1ME1 LINE L1 -138 6028 5874 2211 103 0 3 chr12 44370166 44370457 -99912032 - AluSq SINE Alu -23 290 1 1717 199 27 66 chr12 44370457 44370631 -99911858 - L1ME1 LINE L1 -292 5874 5695 1862 150 89 49 chr12 44370635 44371041 -99911448 + MSTB1 LTR MaLR 2 423 -9 2072 114 40 0 chr12 44371251 44371549 -99910940 + AluSx SINE Alu 1 310 -2 1699 178 14 11 chr12 44372853 44373139 -99909350 + AluJb SINE Alu 1 287 -25 828 100 0 0 chr12 44373139 44373259 -99909230 + (GGAA)n Simple_repeat Simple_repeat 3 122 0 497 132 66 0 chr12 44373443 44373539 -99908950 - MER5A DNA MER1_type -80 109 6 5184 59 14 0 chr12 44373678 44374326 -99908163 + L1PA8 LINE L1 5516 6172 0 346 148 272 0 chr12 44374384 44374465 -99908024 - MLT1F LTR MaLR 0 542 440 2016 142 3 10 chr12 44374469 44374780 -99907709 + AluSx SINE Alu 1 309 -3 1061 299 76 25 chr12 44374823 44375191 -99907298 - MLT1E LTR MaLR -91 502 116 2259 126 7 0 chr12 44375192 44375493 -99906996 - AluSx SINE Alu -9 303 1 933 207 0 0 chr12 44376026 44376195 -99906294 + AluJb SINE Alu 136 304 -8 2109 115 11 0 chr12 44376722 44377008 -99905481 + AluSp SINE Alu 6 294 -19 26 0 0 0 chr12 44378165 44378191 -99904298 + AT_rich Low_complexity Low_complexity 1 26 0 181 200 273 0 chr12 44378265 44378320 -99904169 + MIR SINE MIR 172 241 -21 2012 142 3 0 chr12 44378328 44378617 -99903872 - AluSx SINE Alu -22 290 1 2019 141 0 3 chr12 44378622 44378912 -99903577 - AluJb SINE Alu -23 289 1 21 36 0 0 chr12 44378921 44378949 -99903540 + AT_rich Low_complexity Low_complexity 1 28 0 315 49 0 0 chr12 44379409 44379450 -99903039 + (A)n Simple_repeat Simple_repeat 1 41 0 1648 161 32 18 chr12 44380437 44380763 -99901726 + AluJo SINE Alu 1 330 0 2628 31 0 46 chr12 44381221 44381544 -99900945 - AluY SINE Alu -2 309 2 416 246 107 16 chr12 44381777 44381899 -99900590 + MIR SINE MIR 95 227 -35 21 57 0 0 chr12 44384175 44384210 -99898279 + AT_rich Low_complexity Low_complexity 1 35 0 213 245 19 0 chr12 44384484 44384537 -99897952 + CT-rich Low_complexity Low_complexity 1 54 0 25 0 0 0 chr12 44385046 44385071 -99897418 + AT_rich Low_complexity Low_complexity 1 25 0 225 94 0 0 chr12 44385392 44385424 -99897065 + (A)n Simple_repeat Simple_repeat 1 32 0 218 256 0 0 chr12 44385451 44385494 -99896995 + MIR SINE MIR 203 245 -17 1684 201 0 7 chr12 44386021 44386309 -99896180 - AluJo SINE Alu -25 287 2 1982 160 3 0 chr12 44386508 44386808 -99895681 + AluJo SINE Alu 2 302 -10 952 279 66 43 chr12 44386978 44387373 -99895116 - MLT1H1 LTR MaLR -158 409 1 2043 113 33 13 chr12 44387525 44387825 -99894664 + AluSx SINE Alu 1 306 -6 386 300 66 32 chr12 44387829 44387869 -99894620 + L1MDa LINE L1 1816 1853 -4730 231 36 0 0 chr12 44387869 44387897 -99894592 + (TAA)n Simple_repeat Simple_repeat 1 28 0 386 300 66 32 chr12 44387897 44388115 -99894374 + L1MDa LINE L1 1853 2148 -4435 2112 78 4 4 chr12 44388224 44388492 -99893997 + AluSp SINE Alu 38 305 -8 1206 115 0 22 chr12 44388492 44388674 -99893815 + AluSg/x SINE Alu 132 309 -1 2021 190 40 57 chr12 44388724 44388802 -99893687 + L1M4 LINE L1 4822 4900 -1246 2032 121 0 13 chr12 44388802 44389107 -99893382 - AluSx SINE Alu -10 302 2 2021 190 40 57 chr12 44389107 44389219 -99893270 + L1M4 LINE L1 4900 5012 -1134 1878 140 0 7 chr12 44389219 44389531 -99892958 + AluSx SINE Alu 1 310 0 2021 190 40 57 chr12 44389531 44389833 -99892656 + L1M4 LINE L1 5012 5308 -838 2179 102 0 52 chr12 44389833 44390158 -99892331 + AluSc SINE Alu 1 308 -1 261 209 0 15 chr12 44390162 44390229 -99892260 - L1MB8 LINE L1 -41 6137 6072 * 623 222 4 146 chr12 44390228 44390467 -99892022 - L1MB8 LINE L1 -421 5745 5541 275 163 0 0 chr12 44390480 44390529 -99891960 + L1MB7 LINE L1 6127 6175 -9 1481 158 72 7 chr12 44390532 44390811 -99891678 + AluJo SINE Alu 3 299 -13 31 0 0 0 chr12 44390943 44390974 -99891515 + AT_rich Low_complexity Low_complexity 1 31 0 1716 178 3 0 chr12 44390981 44391267 -99891222 - AluJb SINE Alu -25 287 1 2247 97 7 3 chr12 44391294 44391602 -99890887 + AluY SINE Alu 1 309 -2 314 214 124 11 chr12 44391609 44391698 -99890791 + L1MDa LINE L1 2498 2596 -4125 776 225 133 8 chr12 44391702 44391942 -99890547 + LTR41 LTR ERVL 8 277 -496 397 278 63 54 chr12 44391943 44392148 -99890341 + LTR41 LTR ERVL 425 631 -142 828 166 33 7 chr12 44392148 44392299 -99890190 - FRAM SINE Alu -10 166 12 286 154 26 64 chr12 44392455 44392533 -99889956 + LTR41 LTR ERVL 693 767 -6 1983 252 127 34 chr12 44392536 44393024 -99889465 + L1MDa LINE L1 2547 2988 -3552 2328 106 3 0 chr12 44393024 44393335 -99889154 - AluSx SINE Alu 0 312 1 1983 252 127 34 chr12 44393335 44394037 -99888452 + L1MDa LINE L1 2988 3848 -2692 1767 159 54 7 chr12 44394038 44394334 -99888155 + AluJb SINE Alu 1 310 -2 330 87 0 0 chr12 44394334 44394380 -99888109 + (GGAA)n Simple_repeat Simple_repeat 2 47 0 305 366 30 8 chr12 44394389 44394523 -99887966 + L1MDa LINE L1 3840 3976 -2564 284 177 30 0 chr12 44394659 44394725 -99887764 - AluSp/q SINE Alu -8 295 237 1517 189 59 30 chr12 44394738 44395077 -99887412 - MLT1A2 LTR MaLR -25 349 1 345 214 223 0 chr12 44395096 44395208 -99887281 + LTR50 LTR ERVL 1 137 -658 204 97 0 0 chr12 44395267 44395298 -99887191 + (TG)n Simple_repeat Simple_repeat 2 32 0 1996 111 38 10 chr12 44395461 44395750 -99886739 + AluSq SINE Alu 1 297 -16 2132 118 0 0 chr12 44395752 44396039 -99886450 + AluSx SINE Alu 1 287 -25 23 54 0 0 chr12 44396043 44396080 -99886409 + AT_rich Low_complexity Low_complexity 1 37 0 1583 202 10 7 chr12 44396089 44396381 -99886108 + AluJo SINE Alu 1 293 -19 718 186 7 29 chr12 44396888 44397028 -99885461 + MER47A DNA MER2_type 1 137 -229 2686 198 7 0 chr12 44397114 44397559 -99884930 - HUERS-P2 LTR ERV1 -4177 2914 2467 308 167 10 146 chr12 44397570 44397611 -99884878 - HUERS-P2 LTR ERV1 -3004 84 62 2292 94 0 7 chr12 44397611 44397910 -99884579 - AluY SINE Alu -14 297 1 308 167 10 146 chr12 44397910 44397964 -99884525 - HUERS-P2 LTR ERV1 -3026 62 2 2717 156 83 20 chr12 44397965 44398561 -99883928 - LTR1B LTR ERV1 0 785 140 229 51 51 0 chr12 44398561 44398600 -99883889 + GA-rich Low_complexity Low_complexity 4 44 0 803 277 42 52 chr12 44398600 44398901 -99883588 - L2 LINE L2 -302 3011 2711 2146 109 0 10 chr12 44398901 44399194 -99883295 - AluSq SINE Alu -23 290 1 803 277 42 52 chr12 44399194 44399249 -99883240 - L2 LINE L2 -602 2711 2657 2212 103 0 31 chr12 44399468 44399788 -99882701 + AluSg SINE Alu 1 310 0 21 71 0 0 chr12 44399929 44399971 -99882518 + AT_rich Low_complexity Low_complexity 1 42 0 385 261 165 5 chr12 44400142 44400330 -99882159 + HAL1 LINE L1 1988 2205 -302 21 57 0 0 chr12 44400520 44400555 -99881934 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr12 44400831 44400861 -99881628 + AT_rich Low_complexity Low_complexity 1 30 0 1998 117 0 69 chr12 44402130 44402447 -99880042 + AluSp SINE Alu 1 295 -18 1632 154 4 7 chr12 44402560 44402833 -99879656 + AluSx SINE Alu 40 311 -1 573 125 100 45 chr12 44402895 44403015 -99879474 + MER33 DNA MER1_type 1 121 -110 240 200 0 0 chr12 44403015 44403055 -99879434 + MER33 DNA MER1_type 285 324 0 23 33 0 0 chr12 44403467 44403497 -99878992 + AT_rich Low_complexity Low_complexity 1 30 0 2114 131 0 16 chr12 44403938 44404252 -99878237 - AluSx SINE Alu -3 309 1 1562 183 27 20 chr12 44404777 44405078 -99877411 + AluJo SINE Alu 1 303 -9 772 172 8 8 chr12 44406200 44406328 -99876161 + FLAM_A SINE Alu 1 128 -5 1123 180 45 79 chr12 44406497 44406906 -99875583 + L1MC4 LINE L1 6730 7178 -710 236 261 239 46 chr12 44407724 44407854 -99874635 - L2 LINE L2 -1 3271 3117 939 305 38 39 chr12 44408159 44408296 -99874193 + L2 LINE L2 2520 2656 -616 1832 125 13 39 chr12 44408296 44408601 -99873888 - AluSx SINE Alu -15 297 1 939 305 38 39 chr12 44408601 44409026 -99873463 + L2 LINE L2 2656 3084 -188 809 243 87 0 chr12 44409146 44409352 -99873137 + MIR SINE MIR 20 243 -19 307 330 0 11 chr12 44411104 44411192 -99871297 + L2 LINE L2 2723 2809 -505 410 307 42 52 chr12 44411225 44411417 -99871072 + L2 LINE L2 2951 3140 -173 924 146 0 0 chr12 44411479 44411616 -99870873 - AluJb SINE Alu -8 304 168 852 156 29 40 chr12 44411622 44411795 -99870694 + AluJb SINE Alu 141 311 -1 2265 114 3 0 chr12 44412000 44412299 -99870190 - AluSq SINE Alu -13 300 1 1407 165 172 23 chr12 44412776 44413079 -99869410 - MER7A DNA MER2_type 0 346 1 189 0 0 0 chr12 44414437 44414458 -99868031 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 567 322 77 54 chr12 44415262 44415653 -99866836 + L2 LINE L2 2870 3269 -3 600 266 31 53 chr12 44415715 44415941 -99866548 - Charlie8 DNA MER1_type -2193 224 4 2025 144 0 13 chr12 44416558 44416864 -99865625 - AluSx SINE Alu -10 302 1 2406 65 0 13 chr12 44416945 44417255 -99865234 - AluY SINE Alu -5 306 1 212 239 155 0 chr12 44417308 44417379 -99865110 - L2 LINE L2 -22 3291 3210 3818 187 16 50 chr12 44417628 44418551 -99863938 - LTR5 LTR ERVK 0 969 78 2326 91 0 7 chr12 44418553 44418861 -99863628 - AluSc SINE Alu -3 306 1 515 145 12 0 chr12 44418864 44418947 -99863542 - LTR5 LTR ERVK -885 84 1 949 105 0 0 chr12 44419548 44419681 -99862808 + AluSc SINE Alu 174 306 -3 746 233 93 67 chr12 44419681 44419822 -99862667 - L2 LINE L2 -690 2624 2488 2053 119 3 23 chr12 44419822 44420125 -99862364 + AluSg SINE Alu 1 297 -13 746 233 93 67 chr12 44420125 44420184 -99862305 - L2 LINE L2 -826 2488 2432 1727 171 0 7 chr12 44420184 44420470 -99862019 + AluJo SINE Alu 1 284 -28 746 233 93 67 chr12 44420470 44420581 -99861908 - L2 LINE L2 -882 2432 2304 279 0 0 0 chr12 44420770 44420801 -99861688 + (TA)n Simple_repeat Simple_repeat 1 31 0 1897 139 3 10 chr12 44420801 44421103 -99861386 - AluSx SINE Alu -12 300 1 36 33 0 16 chr12 44421184 44421207 -99861282 + AT_rich Low_complexity Low_complexity 1 23 -37 374 96 110 14 chr12 44421207 44421275 -99861214 - L1PB4 LINE L1 -3 6153 6078 2266 89 13 0 chr12 44421275 44421577 -99860912 - AluSp SINE Alu -7 306 1 36 33 0 16 chr12 44421581 44421618 -99860871 + AT_rich Low_complexity Low_complexity 23 60 0 643 204 140 0 chr12 44421697 44421854 -99860635 + MIR SINE MIR 68 246 -16 2349 98 16 0 chr12 44422320 44422668 -99859821 - AluSx SINE Alu 0 355 3 659 265 102 14 chr12 44422822 44423140 -99859349 + MLT1K LTR MaLR 93 514 -74 23 0 0 0 chr12 44423290 44423313 -99859176 + AT_rich Low_complexity Low_complexity 1 23 0 1056 216 113 64 chr12 44423319 44423601 -99858888 - AluJo SINE Alu -5 297 2 2290 106 6 3 chr12 44423865 44424177 -99858312 + AluSq SINE Alu 1 313 0 2278 96 0 0 chr12 44424187 44424480 -99858009 + AluSc SINE Alu 1 293 -16 470 265 163 35 chr12 44424552 44424809 -99857680 - HAL1 LINE L1 -1581 926 637 1633 117 41 38 chr12 44424995 44425036 -99857453 - L1MB4 LINE L1 0 6180 6141 1965 140 3 3 chr12 44425036 44425328 -99857161 - AluSx SINE Alu -20 292 1 1633 117 41 38 chr12 44425328 44425576 -99856913 - L1MB4 LINE L1 -39 6141 5890 210 301 39 48 chr12 44425608 44425711 -99856778 - MIR SINE MIR -152 110 9 2147 127 0 3 chr12 44425899 44426206 -99856283 - AluSx SINE Alu -6 306 1 355 253 134 30 chr12 44426229 44426431 -99856058 - L1ME LINE L1 -422 5699 5477 303 178 167 33 chr12 44426546 44426636 -99855853 - AluJo SINE Alu -110 192 91 1087 187 24 5 chr12 44427289 44427498 -99854991 + AluJo SINE Alu 92 304 -8 713 255 80 71 chr12 44428633 44428746 -99853743 - L1MC/D LINE L1 -2166 5642 5532 2611 65 0 0 chr12 44428746 44429054 -99853435 - AluY SINE Alu -3 308 1 713 255 80 71 chr12 44429054 44429265 -99853224 - L1MC/D LINE L1 -2276 5532 5315 467 228 261 17 chr12 44430529 44430709 -99851780 + MER58A DNA MER1_type 1 224 0 22 0 0 0 chr12 44431385 44431407 -99851082 + AT_rich Low_complexity Low_complexity 1 22 0 225 294 118 0 chr12 44432302 44432387 -99850102 + L2 LINE L2 3215 3309 -4 300 292 42 57 chr12 44432677 44432869 -99849620 + L1M4 LINE L1 4471 4659 -1487 562 136 0 0 chr12 44432948 44433036 -99849453 - AluSp/q SINE Alu 0 313 226 1906 109 62 0 chr12 44433036 44433293 -99849196 - AluSq SINE Alu -40 273 1 296 120 40 0 chr12 44433293 44433343 -99849146 - Alu SINE Alu -5 297 246 1746 130 26 68 chr12 44433295 44433449 -99849040 - AluSx SINE Alu -17 295 136 297 0 0 0 chr12 44433449 44433482 -99849007 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 2144 121 0 0 chr12 44433483 44433773 -99848716 - AluSx SINE Alu -14 298 9 1746 130 26 68 chr12 44433773 44433924 -99848565 - AluSx SINE Alu -175 137 1 463 305 45 13 chr12 44434412 44434566 -99847923 + MER5B DNA MER1_type 1 159 -19 1370 194 58 26 chr12 44435216 44435598 -99846891 - Charlie4a DNA MER1_type -4 504 111 1915 151 0 16 chr12 44435722 44436027 -99846462 + AluJb SINE Alu 1 300 -12 1094 238 170 15 chr12 44436089 44436500 -99845989 + L1ME3A LINE L1 5682 6156 -14 2261 100 13 7 chr12 44436666 44436976 -99845513 - AluSx SINE Alu 0 312 1 2351 57 3 0 chr12 44437313 44437616 -99844873 - AluY SINE Alu 0 306 3 294 29 0 0 chr12 44437927 44437962 -99844527 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 751 218 7 0 chr12 44437974 44438116 -99844373 - FRAM SINE Alu -33 143 1 232 250 33 50 chr12 44439107 44439227 -99843262 - L1MC4 LINE L1 -60 7982 7865 392 219 67 48 chr12 44439806 44439911 -99842578 - L2 LINE L2 -12 3301 3195 461 225 22 36 chr12 44440083 44440221 -99842268 - L1MC5 LINE L1 -120 7841 7706 2158 133 0 7 chr12 44440406 44440708 -99841781 - AluSx SINE Alu -12 300 1 26 88 0 0 chr12 44441290 44441358 -99841131 + AT_rich Low_complexity Low_complexity 1 68 0 22 70 0 0 chr12 44441599 44441642 -99840847 + AT_rich Low_complexity Low_complexity 1 43 0 3456 197 24 31 chr12 44441703 44442580 -99839909 - L1MA9 LINE L1 -76 6236 5366 747 194 21 7 chr12 44442603 44442747 -99839742 - FRAM SINE Alu -30 146 1 325 161 2 0 chr12 44442914 44442988 -99839501 - L1MA9 LINE L1 -792 5376 5302 2087 135 0 0 chr12 44443195 44443483 -99839006 + AluSx SINE Alu 1 288 -24 1995 134 3 38 chr12 44443799 44444119 -99838370 - AluSx SINE Alu -3 309 1 296 360 0 0 chr12 44444251 44444337 -99838152 + L3 LINE CR1 1377 1462 -115 483 226 32 16 chr12 44444914 44445038 -99837451 - MIR SINE MIR -4 258 133 9069 52 9 151 chr12 44445097 44446713 -99835776 - SVA Other Other 0 1386 1 22 35 0 0 chr12 44447790 44447819 -99834670 + AT_rich Low_complexity Low_complexity 1 29 0 2064 103 0 72 chr12 44448110 44448430 -99834059 - AluSx SINE Alu -15 297 1 750 130 0 0 chr12 44448641 44448749 -99833740 - AluY SINE Alu -203 108 1 676 195 0 0 chr12 44448769 44448882 -99833607 + FLAM_C SINE Alu 3 115 -28 2032 125 0 17 chr12 44450535 44450830 -99831659 - AluSx SINE Alu -22 290 1 297 225 8 75 chr12 44450888 44451008 -99831481 + L2 LINE L2 3052 3163 -150 1159 137 0 0 chr12 44451015 44451183 -99831306 - AluSg/x SINE Alu -15 295 128 592 114 0 0 chr12 44451185 44451273 -99831216 - Tigger1 DNA MER2_type -1322 1096 1009 261 57 0 0 chr12 44451305 44451340 -99831149 + (TTA)n Simple_repeat Simple_repeat 3 37 0 2007 103 15 4 chr12 44451344 44451615 -99830874 - AluSq SINE Alu -37 276 3 542 227 85 43 chr12 44451626 44451767 -99830722 + L2 LINE L2 3163 3309 -4 890 196 0 13 chr12 44451775 44451933 -99830556 + FAM SINE Alu 16 171 -14 22 0 0 0 chr12 44452043 44452065 -99830424 + AT_rich Low_complexity Low_complexity 1 22 0 2022 131 0 3 chr12 44452089 44452372 -99830117 + AluSq SINE Alu 22 303 -10 426 223 175 24 chr12 44453053 44453219 -99829270 - HAL1 LINE L1 -5 2502 2312 477 0 0 0 chr12 44453242 44453295 -99829194 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 1574 158 39 25 chr12 44453296 44453580 -99828909 - AluSx SINE Alu -24 288 1 2247 78 27 7 chr12 44453595 44453888 -99828601 - AluSq SINE Alu -14 299 1 2084 220 141 78 chr12 44453940 44454482 -99828007 - HAL1 LINE L1 -831 1676 1170 2400 79 0 3 chr12 44454482 44454787 -99827702 - AluY SINE Alu -7 304 1 2084 220 141 78 chr12 44454787 44455412 -99827077 - HAL1 LINE L1 -1337 1170 435 631 286 40 36 chr12 44455416 44455664 -99826825 - HAL1 LINE L1 -2242 265 17 2493 79 0 0 chr12 44455664 44455969 -99826520 - AluY SINE Alu -6 305 1 1286 171 0 0 chr12 44456502 44456701 -99825788 - AluJb SINE Alu -113 199 1 2215 119 3 3 chr12 44457542 44457853 -99824636 - AluSx SINE Alu -1 311 1 781 226 6 0 chr12 44458167 44458326 -99824163 - FRAM SINE Alu -4 162 3 563 309 26 11 chr12 44458717 44458908 -99823581 + MIR SINE MIR 28 221 -41 2255 115 0 16 chr12 44459245 44459558 -99822931 + AluSx SINE Alu 1 308 -4 25 51 0 0 chr12 44459583 44459622 -99822867 + AT_rich Low_complexity Low_complexity 1 39 0 2044 122 0 3 chr12 44459782 44460068 -99822421 + AluJb SINE Alu 9 293 -19 378 0 0 0 chr12 44460286 44460328 -99822161 + (TG)n Simple_repeat Simple_repeat 2 43 0 2242 101 7 3 chr12 44460333 44460629 -99821860 - AluSq SINE Alu -12 301 5 2311 101 0 22 chr12 44461804 44462120 -99820369 + AluSc SINE Alu 1 309 0 516 232 0 0 chr12 44462723 44462874 -99819615 + (TA)n Simple_repeat Simple_repeat 2 152 0 1905 161 0 11 chr12 44462878 44463192 -99819297 - AluJo SINE Alu 0 311 1 22 0 0 0 chr12 44463199 44463221 -99819268 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 44463823 44463845 -99818644 + AT_rich Low_complexity Low_complexity 1 22 0 2242 107 3 0 chr12 44465442 44465751 -99816738 + AluY SINE Alu 1 310 -1 832 234 10 50 chr12 44466048 44466347 -99816142 - AluSx SINE Alu -15 287 1 308 203 25 34 chr12 44466356 44466474 -99816015 + T-rich Low_complexity Low_complexity 4 120 0 316 79 127 16 chr12 44468310 44468373 -99814116 - MADE1 DNA Mariner -3 77 8 241 226 49 67 chr12 44468436 44468600 -99813889 + L1ME4a LINE L1 5876 6036 -85 1169 225 21 6 chr12 44468630 44468960 -99813529 - L1MD3 LINE L1 0 7808 7479 1566 192 7 17 chr12 44469408 44469710 -99812779 + AluSx SINE Alu 3 301 -11 679 232 113 69 chr12 44469745 44470038 -99812451 - L1MC4 LINE L1 -302 7740 7419 1991 117 3 78 chr12 44470038 44470372 -99812117 - AluSg SINE Alu -1 309 1 679 232 113 69 chr12 44470372 44470530 -99811959 - L1MC4 LINE L1 -623 7419 7269 10278 116 36 17 chr12 44470689 44470744 -99811745 - Tigger1 DNA MER2_type -675 1743 1691 2136 98 10 16 chr12 44470744 44471050 -99811439 - AluSx SINE Alu -8 304 1 10278 116 36 17 chr12 44471050 44472422 -99810067 - Tigger1 DNA MER2_type -727 1691 276 2424 63 7 13 chr12 44472422 44472725 -99809764 + AluY SINE Alu 1 301 -10 10278 116 36 17 chr12 44472725 44473004 -99809485 - Tigger1 DNA MER2_type -2142 276 4 575 199 22 52 chr12 44473168 44473304 -99809185 - AluJo SINE Alu -178 134 3 1663 170 13 13 chr12 44473319 44473631 -99808858 - AluJb SINE Alu 0 312 1 730 174 9 0 chr12 44473660 44473775 -99808714 + AluJb SINE Alu 3 118 -194 190 359 97 21 chr12 44473960 44474105 -99808384 + L2 LINE L2 2943 3098 -174 433 307 166 0 chr12 44474273 44474478 -99808011 - MIR SINE MIR -13 249 11 1856 129 42 0 chr12 44474584 44474870 -99807619 - AluSx SINE Alu -14 298 1 558 0 0 0 chr12 44475357 44475419 -99807070 + (TTTC)n Simple_repeat Simple_repeat 1 62 0 21 0 0 0 chr12 44475856 44475877 -99806612 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 44476318 44476347 -99806142 + AT_rich Low_complexity Low_complexity 1 29 0 388 331 45 25 chr12 44476567 44476809 -99805680 - L3 LINE CR1 -197 1380 1134 454 312 208 33 chr12 44476846 44477480 -99805009 - L3 LINE CR1 -608 969 225 225 333 35 0 chr12 44478190 44478247 -99804242 - L2 LINE L2 -78 3194 3136 260 182 261 11 chr12 44480246 44480334 -99802155 - MLT1H LTR MaLR -24 525 416 509 259 106 37 chr12 44480452 44480641 -99801848 + MER63A DNA MER1_type 1 202 -8 2193 103 6 16 chr12 44480963 44481274 -99801215 + AluSg SINE Alu 1 308 -2 983 214 42 23 chr12 44483387 44483602 -99798887 - MER20 DNA MER1_type 0 219 1 200 234 85 0 chr12 44484164 44484211 -99798278 - L2 LINE L2 -1 3312 3262 1642 189 17 24 chr12 44484928 44484981 -99797508 + AluJo SINE Alu 1 53 -259 3950 191 25 49 chr12 44484981 44485974 -99796515 + LTR5 LTR ERVK 1 969 0 1642 189 17 24 chr12 44485974 44486217 -99796272 + AluJo SINE Alu 53 295 -17 2142 103 0 42 chr12 44486219 44486353 -99796136 + AluSg SINE Alu 1 139 -171 2304 103 0 6 chr12 44486353 44486664 -99795825 + AluSc SINE Alu 1 309 0 2142 103 0 42 chr12 44486664 44486841 -99795648 + AluSg SINE Alu 139 299 -11 1273 93 77 0 chr12 44487859 44488042 -99794447 - MER30 DNA MER1_type -33 197 1 909 118 0 76 chr12 44488084 44488228 -99794261 - FLAM_C SINE Alu 0 133 1 198 237 119 0 chr12 44488313 44488372 -99794117 - MIR SINE MIR -105 103 38 2126 99 0 18 chr12 44488522 44488806 -99793683 - AluSx SINE Alu -33 279 1 1948 124 4 0 chr12 44489197 44489471 -99793018 + AluSx SINE Alu 1 275 -37 227 289 189 0 chr12 44489498 44489588 -99792901 + MIR SINE MIR 46 152 -110 464 362 9 29 chr12 44490082 44490292 -99792197 - MIR SINE MIR -33 229 24 785 93 0 0 chr12 44490438 44490535 -99791954 - AluY SINE Alu -214 97 1 754 167 0 62 chr12 44490555 44490699 -99791790 + FLAM_C SINE Alu 3 137 -6 1964 139 0 17 chr12 44492322 44492617 -99789872 - AluSx SINE Alu -22 290 1 200 113 16 161 chr12 44492802 44492864 -99789625 - L2 LINE L2 0 3313 3261 1963 120 0 63 chr12 44492879 44493195 -99789294 + AluJb SINE Alu 1 296 -16 470 237 145 60 chr12 44493247 44493496 -99788993 + HAL1 LINE L1 2238 2507 0 2411 123 35 90 chr12 44494011 44494362 -99788127 + Tigger2a DNA MER2_type 3 372 -2336 2353 75 3 0 chr12 44494362 44494654 -99787835 + AluY SINE Alu 1 293 -18 2411 123 35 90 chr12 44494654 44494686 -99787803 + Tigger2a DNA MER2_type 372 361 -2347 830 178 0 0 chr12 44494686 44494815 -99787674 + FLAM_A SINE Alu 1 129 -4 2411 123 35 90 chr12 44494815 44494887 -99787602 + Tigger2a DNA MER2_type 360 434 0 257 273 146 42 chr12 44494887 44494975 -99787514 + L1MC5 LINE L1 7265 7343 -618 2022 201 8 16 chr12 44494975 44495343 -99787146 - MLT1A1 LTR MaLR 0 365 1 257 273 146 42 chr12 44495343 44495419 -99787070 + L1MC5 LINE L1 7343 7446 -515 2251 118 0 0 chr12 44495527 44495814 -99786675 - AluSx SINE Alu -25 287 1 221 306 51 41 chr12 44496059 44496157 -99786332 + MIR3 SINE MIR 60 158 -50 2194 130 10 0 chr12 44496546 44496847 -99785642 + AluJb SINE Alu 3 306 -6 2164 112 7 0 chr12 44497321 44497607 -99784882 + AluSq SINE Alu 1 288 -25 406 281 127 48 chr12 44497668 44497896 -99784593 - MIR SINE MIR 0 262 17 2557 54 0 3 chr12 44498698 44498996 -99783493 - AluY SINE Alu -14 297 1 22 35 0 0 chr12 44499154 44499183 -99783306 + AT_rich Low_complexity Low_complexity 1 29 0 285 291 152 57 chr12 44499620 44499778 -99782711 + MER5A DNA MER1_type 17 189 0 733 220 132 16 chr12 44499817 44499999 -99782490 + MER3 DNA MER1_type 4 206 -3 820 137 26 0 chr12 44500029 44500146 -99782343 - FLAM_C SINE Alu -13 120 1 298 282 64 18 chr12 44500148 44500258 -99782231 + MIR SINE MIR 24 138 -70 391 264 0 0 chr12 44500500 44500587 -99781902 + L2 LINE L2 3186 3272 0 1761 134 9 91 chr12 44500717 44501037 -99781452 + AluJo SINE Alu 1 294 -18 285 297 42 51 chr12 44502219 44502337 -99780152 + L2 LINE L2 3146 3262 -10 1029 160 6 33 chr12 44502363 44502544 -99779945 - FRAM SINE Alu -1 175 1 969 292 146 32 chr12 44502754 44503261 -99779228 - MLT1K LTR MaLR -9 579 15 345 295 268 5 chr12 44503497 44503687 -99778802 + MIR SINE MIR 20 259 -3 615 258 138 39 chr12 44504917 44505154 -99777335 - L1ME4a LINE L1 -19 6102 5890 1676 163 25 31 chr12 44505154 44505270 -99777219 + MER33 DNA MER1_type 1 116 -2469 2641 27 7 0 chr12 44505270 44505567 -99776922 - AluY SINE Alu -12 299 1 1676 163 25 31 chr12 44505567 44505776 -99776713 + MER33 DNA MER1_type 116 324 0 615 258 138 39 chr12 44505776 44505996 -99776493 - L1ME4a LINE L1 -231 5890 5600 1730 191 0 23 chr12 44505996 44506305 -99776184 - AluJo SINE Alu -8 304 3 2471 37 10 7 chr12 44506837 44507134 -99775355 + AluY SINE Alu 1 298 -13 1788 127 72 17 chr12 44507207 44507499 -99774990 + AluSq SINE Alu 1 308 -5 208 211 14 28 chr12 44508045 44508116 -99774373 + CT-rich Low_complexity Low_complexity 3 72 0 300 233 33 33 chr12 44508221 44508311 -99774178 + CT-rich Low_complexity Low_complexity 6 95 0 2331 114 0 0 chr12 44509060 44509367 -99773122 - AluSx SINE Alu -5 307 1 872 84 71 97 chr12 44509865 44510020 -99772469 + MER46B DNA MER2_type 1 26 -210 803 196 0 8 chr12 44510020 44510153 -99772336 + FLAM_C SINE Alu 1 132 -11 1403 140 5 0 chr12 44510171 44510392 -99772097 + MER46B DNA MER2_type 15 236 0 424 294 28 39 chr12 44510573 44510753 -99771736 - MIR SINE MIR -61 201 24 187 274 20 0 chr12 44510989 44511040 -99771449 + L3b LINE CR1 1524 1575 -8 1886 139 0 0 chr12 44511434 44511700 -99770789 - AluSx SINE Alu -12 300 35 207 200 0 0 chr12 44512294 44512339 -99770150 + (TA)n Simple_repeat Simple_repeat 1 45 0 2267 104 3 3 chr12 44512339 44512638 -99769851 - AluSx SINE Alu -13 299 1 22 0 0 0 chr12 44513208 44513230 -99769259 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 44513819 44513842 -99768647 + AT_rich Low_complexity Low_complexity 1 23 0 1651 176 25 0 chr12 44513878 44514156 -99768333 + AluJb SINE Alu 1 285 -27 420 20 0 0 chr12 44514277 44514326 -99768163 + (TA)n Simple_repeat Simple_repeat 2 50 0 235 250 0 0 chr12 44514487 44514531 -99767958 - MIR SINE MIR -116 146 103 194 256 23 0 chr12 44514597 44514640 -99767849 - L2 LINE L2 -13 3259 3216 2257 109 0 25 chr12 44514807 44515127 -99767362 + AluSx SINE Alu 1 312 0 207 100 0 0 chr12 44515389 44515419 -99767070 + (CAT)n Simple_repeat Simple_repeat 1 30 0 659 254 48 75 chr12 44516333 44516523 -99765966 - MIR SINE MIR -1 261 78 4105 177 63 57 chr12 44516523 44517376 -99765113 - MER21B LTR ERV1 -3 860 3 659 254 48 75 chr12 44517376 44517453 -99765036 - MIR SINE MIR -184 78 1 2115 110 7 7 chr12 44517538 44517838 -99764651 + AluSg SINE Alu 2 301 -9 2331 72 0 23 chr12 44518982 44519286 -99763203 + AluY SINE Alu 1 297 -14 26 0 0 0 chr12 44519716 44519742 -99762747 + AT_rich Low_complexity Low_complexity 1 26 0 583 202 46 0 chr12 44519859 44519968 -99762521 + FLAM_A SINE Alu 12 125 -17 2331 94 7 0 chr12 44519973 44520271 -99762218 + AluSq SINE Alu 1 300 -13 360 0 0 0 chr12 44520276 44520316 -99762173 + (CA)n Simple_repeat Simple_repeat 2 41 0 2059 122 0 3 chr12 44520534 44520820 -99761669 - AluJb SINE Alu -19 293 9 25 51 0 0 chr12 44520980 44521019 -99761470 + AT_rich Low_complexity Low_complexity 1 39 0 2263 112 0 16 chr12 44521044 44521357 -99761132 - AluSx SINE Alu -4 308 1 557 309 26 11 chr12 44521694 44521885 -99760604 - MIR SINE MIR -41 221 28 241 135 0 0 chr12 44522070 44522107 -99760382 + MER94 DNA DNA 13 49 -85 881 225 0 0 chr12 44522276 44522436 -99760053 + FRAM SINE Alu 3 162 -4 2199 119 3 3 chr12 44522750 44523060 -99759429 + AluSx SINE Alu 1 310 -2 1257 176 0 0 chr12 44523901 44524100 -99758389 + AluJb SINE Alu 1 199 -113 2545 227 121 75 chr12 44524608 44524633 -99757856 + HAL1 LINE L1 2 24 -2483 2528 78 0 0 chr12 44524633 44524942 -99757547 + AluY SINE Alu 1 309 -2 2545 227 121 75 chr12 44524942 44525817 -99756672 + HAL1 LINE L1 24 1160 -1347 2412 79 0 3 chr12 44525817 44526122 -99756367 + AluY SINE Alu 1 304 -7 2545 227 121 75 chr12 44526122 44526664 -99755825 + HAL1 LINE L1 1160 1676 -831 2275 82 27 3 chr12 44526716 44527008 -99755481 + AluSq SINE Alu 1 299 -14 1563 158 39 25 chr12 44527023 44527307 -99755182 + AluSx SINE Alu 1 288 -24 513 0 0 0 chr12 44527308 44527365 -99755124 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 499 227 184 22 chr12 44527369 44527554 -99754935 + HAL1 LINE L1 2288 2502 -5 2011 131 0 3 chr12 44528235 44528518 -99753971 - AluSq SINE Alu -10 303 22 22 0 0 0 chr12 44528542 44528564 -99753925 + AT_rich Low_complexity Low_complexity 1 22 0 873 196 0 13 chr12 44528674 44528832 -99753657 - FAM SINE Alu -14 171 16 536 227 85 43 chr12 44528840 44528981 -99753508 - L2 LINE L2 -4 3309 3163 2012 103 15 4 chr12 44528992 44529263 -99753226 + AluSq SINE Alu 3 276 -37 234 62 0 0 chr12 44529267 44529299 -99753190 + (TAA)n Simple_repeat Simple_repeat 3 34 0 636 114 0 0 chr12 44529331 44529419 -99753070 + Tigger1 DNA MER2_type 1009 1096 -1322 1159 137 0 0 chr12 44529421 44529589 -99752900 + AluSg/x SINE Alu 130 297 -15 290 225 8 75 chr12 44529596 44529716 -99752773 - L2 LINE L2 -150 3163 3052 2028 125 0 17 chr12 44529774 44530069 -99752420 + AluSx SINE Alu 1 290 -22 754 167 0 62 chr12 44531692 44531836 -99750653 - FLAM_C SINE Alu -6 137 3 2483 60 7 0 chr12 44531856 44532158 -99750331 + AluY SINE Alu 1 304 -7 1779 141 59 3 chr12 44532231 44532521 -99749968 + AluSq SINE Alu 1 306 -7 2198 203 18 0 chr12 44535077 44535471 -99747018 - MER57A LTR ERV1 0 403 3 44214 47 1 3 chr12 44535699 44541605 -99740884 + L1PA4 LINE L1 1 5902 -253 2640 14 0 0 chr12 44541605 44541932 -99740557 + AluYb8 SINE Alu 1 327 0 44214 47 1 3 chr12 44541932 44542186 -99740303 + L1PA4 LINE L1 5902 6155 0 275 221 74 143 chr12 44542277 44542494 -99739995 - L2 LINE L2 -97 3216 3015 1290 148 25 0 chr12 44542559 44542762 -99739727 - MLT1B LTR MaLR 0 390 183 2551 178 62 89 chr12 44542796 44543426 -99739063 - MER21B LTR ERV1 -54 809 197 247 254 27 91 chr12 44543624 44543734 -99738755 - MER21B LTR ERV1 -758 105 3 890 146 0 44 chr12 44543752 44543910 -99738579 - MLT1B LTR MaLR -239 151 1 227 309 72 0 chr12 44544186 44544283 -99738206 + MIR SINE MIR 139 242 -20 899 204 21 5 chr12 44544319 44544505 -99737984 - MER4D LTR ERV1 0 903 715 1449 181 70 0 chr12 44544506 44544777 -99737712 + AluJb SINE Alu 1 290 -22 1274 176 124 22 chr12 44544802 44545069 -99737420 - MER49 LTR ERV1 -629 294 1 2722 133 13 5 chr12 44545612 44546010 -99736479 + MER57A LTR ERV1 1 401 -2 556 341 9 5 chr12 44546430 44546644 -99735845 + L3 LINE CR1 1319 1533 -44 1903 203 20 89 chr12 44546962 44547500 -99734989 + MLT1D LTR MaLR 1 501 -4 376 275 47 81 chr12 44547509 44547891 -99734598 - L1ME4a LINE L1 -17 6104 5736 562 331 80 7 chr12 44548319 44548594 -99733895 - L3 LINE CR1 -38 1539 1245 264 313 184 27 chr12 44549157 44549304 -99733185 + MER117 DNA MER1_type 2 171 -26 377 350 5 32 chr12 44549427 44549613 -99732876 - L3 LINE CR1 -316 1261 1081 2851 10 0 0 chr12 44550309 44550615 -99731874 - AluYa5 SINE Alu -5 306 1 2266 92 0 36 chr12 44551453 44551759 -99730730 - AluSx SINE Alu -17 295 1 288 184 81 58 chr12 44552218 44552305 -99730184 + L2 LINE L2 3225 3313 0 350 337 54 24 chr12 44552610 44552645 -99729844 - MIR SINE MIR -6 256 223 2317 100 0 10 chr12 44552645 44552955 -99729534 - AluSq SINE Alu -6 307 1 350 337 54 24 chr12 44552955 44553124 -99729365 - MIR SINE MIR -39 223 46 314 238 309 16 chr12 44553252 44553378 -99729111 + MER5A DNA MER1_type 26 188 -1 371 307 102 0 chr12 44553975 44554112 -99728377 + MIR SINE MIR 65 215 -47 210 71 0 0 chr12 44554147 44554175 -99728314 + (TTA)n Simple_repeat Simple_repeat 1 28 0 201 121 0 0 chr12 44554724 44554757 -99727732 + (T)n Simple_repeat Simple_repeat 1 33 0 213 193 363 22 chr12 44555839 44555974 -99726515 + MIR3 SINE MIR 15 195 -13 215 330 68 29 chr12 44556050 44556153 -99726336 - L2 LINE L2 -13 3259 3153 1636 177 3 13 chr12 44556275 44556575 -99725914 + AluJo SINE Alu 13 309 -3 1999 122 14 10 chr12 44557529 44557825 -99724664 + AluSx SINE Alu 1 297 -15 394 160 50 101 chr12 44557833 44557952 -99724537 + MER103 DNA DNA 11 123 -43 192 135 0 0 chr12 44558575 44558612 -99723877 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 201 277 300 8 chr12 44558652 44558782 -99723707 - MER5A DNA MER1_type -21 168 1 1833 170 3 35 chr12 44560078 44560262 -99722227 - AluJo SINE Alu 0 312 141 2050 115 3 20 chr12 44560262 44560579 -99721910 - AluSx SINE Alu 0 312 2 1833 170 3 35 chr12 44560579 44560711 -99721778 - AluJo SINE Alu -171 141 6 270 47 0 70 chr12 44560723 44560766 -99721723 + L1MA9 LINE L1 6273 6312 0 420 360 31 28 chr12 44560767 44560927 -99721562 - MLT1K LTR MaLR -153 435 272 2203 171 64 2 chr12 44560927 44561336 -99721153 + MER63B DNA MER1_type 1 434 -2 420 360 31 28 chr12 44561336 44561461 -99721028 - MLT1K LTR MaLR -316 272 149 254 279 0 0 chr12 44561631 44561692 -99720797 + MER94 DNA DNA 40 100 -34 263 299 43 51 chr12 44561704 44561821 -99720668 - MIR SINE MIR -70 138 23 881 236 0 6 chr12 44562022 44562187 -99720302 - FAM SINE Alu -10 165 2 568 251 63 62 chr12 44562226 44562524 -99719965 + L1ME4a LINE L1 5526 5835 -286 231 270 122 88 chr12 44563556 44563595 -99718894 + MIR SINE MIR 49 85 -177 769 176 0 22 chr12 44563595 44563731 -99718758 - FLAM_C SINE Alu 0 133 1 231 270 122 88 chr12 44563731 44563839 -99718650 + MIR SINE MIR 85 201 -61 * 273 232 0 0 chr12 44563820 44563876 -99718613 + L2 LINE L2 3258 3313 0 577 215 21 58 chr12 44563921 44564112 -99718377 + L2 LINE L2 3124 3307 -6 2298 107 0 0 chr12 44564210 44564508 -99717981 + AluSx SINE Alu 1 298 -14 378 244 41 16 chr12 44565011 44565134 -99717355 + L2 LINE L2 3183 3308 -5 2209 75 20 14 chr12 44566070 44566364 -99716125 + AluSx SINE Alu 1 296 -16 262 302 99 42 chr12 44566781 44566973 -99715516 - MIR SINE MIR -51 211 9 21 0 0 0 chr12 44567413 44567434 -99715055 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 44568572 44568593 -99713896 + AT_rich Low_complexity Low_complexity 1 21 0 2058 103 23 23 chr12 44568737 44569038 -99713451 + AluSx SINE Alu 1 301 -11 2099 138 78 39 chr12 44569157 44569569 -99712920 + MER101B LTR ERV1 1 428 -142 1905 132 0 46 chr12 44569578 44569903 -99712586 - AluSg SINE Alu 0 310 1 577 284 243 3 chr12 44570246 44570559 -99711930 + L2 LINE L2 2912 3299 -14 364 222 0 102 chr12 44570783 44570891 -99711598 - MIR3 SINE MIR -39 169 73 2759 150 45 40 chr12 44571160 44571278 -99711211 + LTR49 LTR ERV1 1 117 -478 3614 144 32 80 chr12 44571278 44572000 -99710489 - LTR8 LTR ERV1 0 691 5 2759 150 45 40 chr12 44572000 44572435 -99710054 + LTR49 LTR ERV1 117 557 -38 3877 190 75 3 chr12 44572479 44573190 -99709299 + LTR49-int LTR ERV1 33 794 -5537 3374 104 37 39 chr12 44573193 44573584 -99708905 + MER41A LTR ERV1 19 410 -144 2394 86 10 0 chr12 44573584 44573887 -99708602 - AluSg SINE Alu -4 306 1 3374 104 37 39 chr12 44573887 44574032 -99708457 + MER41A LTR ERV1 410 554 0 2895 175 71 76 chr12 44574058 44574260 -99708229 + LTR49-int LTR ERV1 802 1004 -5327 279 0 0 0 chr12 44574260 44574291 -99708198 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2895 175 71 76 chr12 44574291 44574786 -99707703 + LTR49-int LTR ERV1 1004 1500 -4831 1546 97 87 128 chr12 44574786 44575122 -99707367 + AluSx SINE Alu 1 324 0 2895 175 71 76 chr12 44575122 44576157 -99706332 + LTR49-int LTR ERV1 1500 2723 -3608 831 168 15 0 chr12 44576176 44576307 -99706182 - AluSq/x SINE Alu -179 133 1 19085 132 35 63 chr12 44576307 44580043 -99702446 + LTR49-int LTR ERV1 2696 6329 -2 3159 167 43 29 chr12 44580045 44580632 -99701857 + LTR49 LTR ERV1 1 595 0 428 0 19 0 chr12 44580865 44580917 -99701572 + (CA)n Simple_repeat Simple_repeat 1 53 0 725 128 0 105 chr12 44581353 44581486 -99701003 - FLAM_A SINE Alu -14 119 1 2274 106 3 3 chr12 44581494 44581797 -99700692 - AluSq SINE Alu -10 303 1 183 213 0 43 chr12 44582530 44582577 -99699912 - MER5A DNA MER1_type -82 107 63 1147 170 30 37 chr12 44583331 44583602 -99698887 + pTR5 LTR ERV1 741 1009 -1429 * 4879 111 276 29 chr12 44583584 44584633 -99697856 + pTR5 LTR ERV1 382 2438 0 1761 181 3 3 chr12 44584642 44584940 -99697549 + AluJb SINE Alu 2 299 -13 270 0 0 0 chr12 44585810 44585840 -99696649 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4482 116 19 11 chr12 44586436 44587066 -99695423 - MER41B LTR ERV1 0 635 1 336 250 98 38 chr12 44587208 44587340 -99695149 - L2 LINE L2 -2 3311 3172 211 268 61 49 chr12 44588653 44588735 -99693754 - L2 LINE L2 -54 3218 3136 2528 58 7 3 chr12 44589103 44589413 -99693076 - AluY SINE Alu 0 311 1 375 182 17 21 chr12 44589427 44589528 -99692961 - MIR SINE MIR -62 146 102 874 114 45 0 chr12 44589765 44589897 -99692592 - L1PA10 LINE L1 -6 6162 6025 343 239 103 86 chr12 44589924 44590225 -99692264 + L1ME4a LINE L1 5800 6105 -16 243 246 123 25 chr12 44592664 44592786 -99689703 + L1MC4a LINE L1 6042 6175 -1633 836 144 0 0 chr12 44593072 44593190 -99689299 - FLAM_C SINE Alu -15 118 1 230 246 16 0 chr12 44593244 44593305 -99689184 + (CA)n Simple_repeat Simple_repeat 2 63 0 252 229 0 33 chr12 44593382 44593443 -99689046 - MIR SINE MIR -130 78 20 464 299 87 82 chr12 44593758 44594162 -99688327 + L2 LINE L2 2851 3256 -16 405 287 146 18 chr12 44594644 44594808 -99687681 + MIR3 SINE MIR 20 204 -4 27 29 0 0 chr12 44595286 44595320 -99687169 + AT_rich Low_complexity Low_complexity 1 34 0 180 0 0 0 chr12 44595851 44595871 -99686618 + (T)n Simple_repeat Simple_repeat 1 20 0 365 287 83 0 chr12 44597720 44597828 -99684661 - L2 LINE L2 -22 3291 3175 182 163 0 23 chr12 44598423 44598466 -99684023 + L2 LINE L2 2346 2387 -927 213 296 52 69 chr12 44598513 44598746 -99683743 + L2 LINE L2 2827 3055 -217 2017 125 0 0 chr12 44598853 44599156 -99683333 - AluSx SINE Alu 0 305 3 606 303 88 16 chr12 44599676 44599927 -99682562 - MLT1K LTR MaLR 0 588 320 401 238 66 41 chr12 44599963 44600085 -99682404 + L2 LINE L2 3180 3304 -9 738 249 72 10 chr12 44600135 44600344 -99682145 - MLT1K LTR MaLR -356 232 11 387 292 90 61 chr12 44600369 44600634 -99681855 - L2 LINE L2 -237 3035 2764 2589 153 25 50 chr12 44600986 44601288 -99681201 - MLT1C LTR MaLR 0 467 180 1335 167 3 95 chr12 44601288 44601605 -99680884 - AluJo SINE Alu -24 288 1 2589 153 25 50 chr12 44601605 44601779 -99680710 - MLT1C LTR MaLR -287 180 3 2122 131 3 0 chr12 44601804 44602110 -99680379 + AluSx SINE Alu 1 307 -5 931 160 26 0 chr12 44602115 44602271 -99680218 + FRAM SINE Alu 1 157 -19 484 307 46 7 chr12 44602551 44602704 -99679785 - MIR SINE MIR -72 190 32 180 240 60 40 chr12 44602843 44602893 -99679596 + L2 LINE L2 3245 3295 -18 1955 63 8 16 chr12 44603113 44603368 -99679121 + AluSq SINE Alu 61 313 0 21 0 0 0 chr12 44604563 44604584 -99677905 + AT_rich Low_complexity Low_complexity 1 21 0 332 284 86 110 chr12 44604735 44605190 -99677299 + L1M2 LINE L1 526 969 -5880 237 224 0 0 chr12 44607305 44607363 -99675126 + GA-rich Low_complexity Low_complexity 3 60 0 574 188 111 17 chr12 44608166 44608283 -99674206 + FLAM_A SINE Alu 8 135 -7 270 0 0 0 chr12 44611495 44611525 -99670964 + (CA)n Simple_repeat Simple_repeat 2 31 0 1703 99 13 26 chr12 44611742 44611975 -99670514 + MER30 DNA MER1_type 1 230 0 2323 97 0 7 chr12 44612912 44613211 -99669278 - AluSx SINE Alu -15 297 1 442 217 0 12 chr12 44613379 44613462 -99669027 + MIR3 SINE MIR 79 160 -48 227 347 31 10 chr12 44613511 44613609 -99668880 - MER5B DNA MER1_type -77 101 2 365 136 39 19 chr12 44613692 44613795 -99668694 + CT-rich Low_complexity Low_complexity 4 108 0 322 280 67 0 chr12 44613939 44614014 -99668475 + L2 LINE L2 3174 3253 -19 2150 112 3 10 chr12 44614499 44614795 -99667694 + AluSq SINE Alu 1 294 -19 366 196 32 120 chr12 44615357 44615515 -99666974 + L2 LINE L2 2990 3133 -180 2059 113 3 3 chr12 44615611 44615930 -99666559 + AluSq SINE Alu 1 319 0 201 256 44 33 chr12 44616607 44616697 -99665792 - MIR SINE MIR -50 212 122 308 175 42 150 chr12 44616926 44617046 -99665443 + MIR3 SINE MIR 67 173 -35 367 303 25 110 chr12 44618549 44618912 -99663577 - L2 LINE L2 -9 3263 2932 2381 100 3 0 chr12 44618952 44619261 -99663228 - AluSx SINE Alu -2 310 1 21 36 0 0 chr12 44619739 44619767 -99662722 + AT_rich Low_complexity Low_complexity 1 28 0 772 195 65 0 chr12 44620433 44620587 -99661902 + MER53 DNA DNA 26 189 0 1463 154 135 12 chr12 44620839 44621119 -99661370 + AluJb SINE Alu 2 302 0 22 0 0 0 chr12 44621640 44621662 -99660827 + AT_rich Low_complexity Low_complexity 1 22 0 1622 185 0 17 chr12 44621833 44622120 -99660369 - AluJb SINE Alu -17 295 14 2275 82 0 10 chr12 44622195 44622522 -99659967 - AluSq SINE Alu 0 313 1 21 0 0 0 chr12 44622589 44622610 -99659879 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 44623787 44623810 -99658679 + AT_rich Low_complexity Low_complexity 1 23 0 2280 102 3 3 chr12 44623832 44624137 -99658352 - AluSq SINE Alu -8 305 1 332 279 38 19 chr12 44625528 44625686 -99656803 + L1MC4a LINE L1 5771 5931 -1877 1161 172 0 0 chr12 44625800 44625980 -99656509 + L1PB4 LINE L1 5973 6152 -4 1861 160 3 3 chr12 44626199 44626487 -99656002 + AluJb SINE Alu 1 288 -24 1898 101 4 0 chr12 44626881 44627128 -99655361 - AluSq SINE Alu -65 248 1 256 286 32 0 chr12 44627421 44627484 -99655005 + L2 LINE L2 3202 3266 -6 25 31 0 0 chr12 44627650 44627682 -99654807 + AT_rich Low_complexity Low_complexity 1 32 0 359 289 97 7 chr12 44628022 44628200 -99654289 - MIR SINE MIR -51 157 12 216 339 77 15 chr12 44628268 44628463 -99654026 + L2 LINE L2 2364 2570 -744 2291 98 10 3 chr12 44630042 44630348 -99652141 - AluSq SINE Alu -5 308 1 2309 94 10 7 chr12 44630388 44630696 -99651793 - AluSc SINE Alu 0 309 1 2540 67 0 13 chr12 44630942 44631255 -99651234 - AluY SINE Alu -2 309 1 2194 94 24 0 chr12 44631478 44631765 -99650724 - AluSx SINE Alu -18 294 1 22 0 0 0 chr12 44631775 44631797 -99650692 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr12 44632267 44632295 -99650194 + AT_rich Low_complexity Low_complexity 1 28 0 2232 120 7 0 chr12 44632463 44632772 -99649717 + AluSx SINE Alu 1 311 -1 450 0 0 0 chr12 44633854 44633904 -99648585 + (TG)n Simple_repeat Simple_repeat 1 50 0 2098 110 14 3 chr12 44634239 44634569 -99647920 + AluSx SINE Alu 1 333 0 780 166 0 65 chr12 44634909 44635048 -99647441 + AluJo SINE Alu 1 130 -172 264 213 0 0 chr12 44635048 44635109 -99647380 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 1060 149 0 0 chr12 44635120 44635274 -99647215 + AluJo SINE Alu 129 282 -30 184 231 19 19 chr12 44637331 44637383 -99645106 - L2 LINE L2 -1 3271 3220 594 162 120 17 chr12 44637564 44637681 -99644808 + FLAM_A SINE Alu 1 129 -4 244 159 23 0 chr12 44637781 44637825 -99644664 + L2 LINE L2 3264 3308 -5 409 262 169 35 chr12 44638098 44638270 -99644219 + MIR SINE MIR 20 214 -48 2190 121 0 3 chr12 44639347 44639652 -99642837 - AluSq SINE Alu -9 304 1 2174 115 0 3 chr12 44640546 44640851 -99641638 - AluSq SINE Alu -8 305 2 401 309 56 0 chr12 44640853 44640979 -99641510 - MIR SINE MIR -113 149 17 478 127 0 0 chr12 44641017 44641088 -99641401 - MIR SINE MIR -107 155 85 2511 47 0 7 chr12 44641216 44641512 -99640977 - AluY SINE Alu -17 294 1 1669 109 116 32 chr12 44641570 44641881 -99640608 + MER1B DNA MER1_type 1 337 -2 339 298 99 83 chr12 44642159 44642305 -99640184 - MIR SINE MIR -6 256 103 2123 136 0 3 chr12 44642305 44642613 -99639876 + AluJb SINE Alu 1 307 -5 339 298 99 83 chr12 44642613 44642718 -99639771 - MIR SINE MIR -159 103 1 1191 160 0 0 chr12 44644320 44644495 -99637994 - AluJb SINE Alu -11 301 127 193 359 94 24 chr12 44644675 44644887 -99637602 - L2 LINE L2 -239 3033 2807 2327 108 7 0 chr12 44645527 44645833 -99636656 - AluSx SINE Alu -4 308 1 872 84 71 97 chr12 44646331 44646486 -99636003 + MER46B DNA MER2_type 1 26 -210 803 196 0 8 chr12 44646486 44646619 -99635870 + FLAM_C SINE Alu 1 132 -11 1403 140 5 0 chr12 44646637 44646858 -99635631 + MER46B DNA MER2_type 15 236 0 424 294 28 39 chr12 44647039 44647219 -99635270 - MIR SINE MIR -61 201 24 187 271 21 0 chr12 44647458 44647506 -99634983 + L3 LINE CR1 1521 1569 -8 1886 139 0 0 chr12 44647900 44648166 -99634323 - AluSx SINE Alu -12 300 35 2348 103 0 3 chr12 44648803 44649105 -99633384 - AluSx SINE Alu -11 301 1 200 113 16 161 chr12 44649290 44649352 -99633137 - L2 LINE L2 0 3313 3261 1971 120 0 63 chr12 44649367 44649684 -99632805 + AluJb SINE Alu 1 297 -15 470 237 145 60 chr12 44649736 44649985 -99632504 + HAL1 LINE L1 2238 2507 0 2411 123 35 90 chr12 44650500 44650851 -99631638 + Tigger2a DNA MER2_type 3 372 -2336 2353 75 3 0 chr12 44650851 44651143 -99631346 + AluY SINE Alu 1 293 -18 2411 123 35 90 chr12 44651143 44651175 -99631314 + Tigger2a DNA MER2_type 372 361 -2347 830 178 0 0 chr12 44651175 44651304 -99631185 + FLAM_A SINE Alu 1 129 -4 2411 123 35 90 chr12 44651304 44651376 -99631113 + Tigger2a DNA MER2_type 360 434 0 257 273 146 42 chr12 44651376 44651464 -99631025 + L1MC5 LINE L1 7265 7343 -618 2022 201 8 16 chr12 44651464 44651832 -99630657 - MLT1A1 LTR MaLR 0 365 1 257 273 146 42 chr12 44651832 44651908 -99630581 + L1MC5 LINE L1 7343 7446 -515 2012 134 14 0 chr12 44652016 44652299 -99630190 - AluSx SINE Alu -25 287 1 221 306 51 41 chr12 44652544 44652642 -99629847 + MIR3 SINE MIR 60 158 -50 2209 126 10 0 chr12 44653032 44653333 -99629156 + AluJb SINE Alu 3 306 -6 344 292 67 42 chr12 44653533 44653653 -99628836 - L2 LINE L2 -16 3256 3134 1307 201 10 24 chr12 44653873 44654162 -99628327 - AluSq SINE Alu -28 285 1 250 151 143 111 chr12 44654507 44654633 -99627856 + MIR SINE MIR 61 190 -72 2403 86 0 0 chr12 44655679 44655982 -99626507 - AluSg SINE Alu -7 303 1 269 268 111 0 chr12 44656224 44656329 -99626160 + MIR3 SINE MIR 63 178 -30 219 269 185 46 chr12 44658323 44658431 -99624058 + L2 LINE L2 3137 3259 -13 2346 77 0 0 chr12 44659053 44659338 -99623151 - AluSx SINE Alu -16 296 12 387 90 104 15 chr12 44661506 44661573 -99620916 - MADE1 DNA Mariner 0 80 8 303 230 48 73 chr12 44661636 44661801 -99620688 + L1ME4a LINE L1 5876 6036 -85 1574 213 13 5 chr12 44661829 44662168 -99620321 - L1MD3 LINE L1 -10 7985 7560 1222 134 13 38 chr12 44662195 44662434 -99620055 - AluSq SINE Alu 0 313 81 1706 132 20 24 chr12 44663075 44663370 -99619119 - AluSq SINE Alu -19 294 1 2391 87 0 3 chr12 44663415 44663724 -99618765 + AluSc SINE Alu 2 309 0 1124 152 14 33 chr12 44663730 44663940 -99618549 + AluJo SINE Alu 84 289 -23 515 100 12 12 chr12 44664717 44664797 -99617692 - L1ME2 LINE L1 0 6164 6085 3071 210 42 24 chr12 44664804 44665443 -99617046 + MER82 DNA MER2_type 2 652 -1 2188 101 28 0 chr12 44666507 44666795 -99615694 + AluSx SINE Alu 1 296 -16 1504 102 0 28 chr12 44667096 44667311 -99615178 - AluSq SINE Alu -19 294 86 604 153 56 49 chr12 44667320 44667464 -99615025 + THE1C LTR MaLR 227 371 -4 834 135 55 15 chr12 44667601 44667801 -99614688 + AluSq SINE Alu 2 209 -104 574 102 0 11 chr12 44668630 44668718 -99613771 - L1PB3 LINE L1 -3 6151 6065 2023 130 31 0 chr12 44669201 44669493 -99612996 - AluSx SINE Alu -11 301 1 32 26 0 0 chr12 44669596 44669635 -99612854 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr12 44670413 44670437 -99612052 + AT_rich Low_complexity Low_complexity 1 24 0 2014 130 0 44 chr12 44670438 44670754 -99611735 + AluSx SINE Alu 1 302 -10 671 273 40 16 chr12 44671180 44671429 -99611060 - LTR40b LTR ERVL -57 405 151 1019 277 166 32 chr12 44671622 44672628 -99609861 + L1M4 LINE L1 3903 5043 -1103 2862 117 35 18 chr12 44672719 44673154 -99609335 - L1PB4 LINE L1 -1 6155 5714 1612 179 41 7 chr12 44673378 44673538 -99608951 - AluJo SINE Alu -11 301 125 189 0 0 0 chr12 44673538 44673559 -99608930 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1612 179 41 7 chr12 44673559 44673689 -99608800 - AluJo SINE Alu -187 125 1 230 223 109 92 chr12 44673744 44673928 -99608561 - L1MC/D LINE L1 -2064 5744 5558 22 0 0 0 chr12 44673939 44673961 -99608528 + AT_rich Low_complexity Low_complexity 1 22 0 243 267 114 0 chr12 44673972 44674077 -99608412 - L1MC/D LINE L1 -3082 3064 2948 295 269 202 10 chr12 44674265 44674369 -99608120 - L2 LINE L2 0 3313 3190 2013 148 3 13 chr12 44674808 44675112 -99607377 + AluSx SINE Alu 1 301 -11 1919 225 96 68 chr12 44675147 44675441 -99607048 - L1MC4 LINE L1 -302 7740 7456 2141 96 3 78 chr12 44675441 44675775 -99606714 - AluSg SINE Alu -1 309 1 1919 225 96 68 chr12 44675775 44676017 -99606472 - L1MC4 LINE L1 -586 7456 7222 1612 183 66 31 chr12 44676017 44676367 -99606122 + MLT1A1 LTR MaLR 4 365 0 1919 225 96 68 chr12 44676367 44676602 -99605887 - L1MC4 LINE L1 -820 7222 6943 189 0 0 0 chr12 44676602 44676623 -99605866 + (TTGG)n Simple_repeat Simple_repeat 2 22 0 292 222 22 33 chr12 44676642 44676732 -99605757 - L1MB4 LINE L1 -7 6173 6085 2165 182 46 23 chr12 44676769 44677440 -99605049 - L1MB4 LINE L1 -432 5748 5067 632 243 59 6 chr12 44677441 44677610 -99604879 - L1MC4 LINE L1 -1096 6946 6769 1900 223 70 25 chr12 44677756 44678201 -99604288 + LTR40c LTR ERVL 1 465 0 42 0 0 0 chr12 44678288 44678330 -99604159 + AT_rich Low_complexity Low_complexity 1 42 0 2226 120 0 0 chr12 44678923 44679215 -99603274 + AluSq SINE Alu 1 292 -21 1693 167 28 7 chr12 44679329 44679611 -99602878 + AluJo SINE Alu 1 288 -24 1866 147 17 0 chr12 44679621 44679913 -99602576 + AluSx SINE Alu 1 297 -15 255 276 11 46 chr12 44680551 44680638 -99601851 - MER5A DNA MER1_type -105 84 1 2366 83 10 0 chr12 44681206 44681506 -99600983 - AluSx SINE Alu -9 303 1 818 133 0 44 chr12 44681531 44681666 -99600823 - FLAM_C SINE Alu 0 133 5 32 44 0 29 chr12 44682691 44682728 -99599761 + AT_rich Low_complexity Low_complexity 1 37 -29 2009 121 0 10 chr12 44682728 44683017 -99599472 - AluSx SINE Alu -26 286 1 32 44 0 29 chr12 44683017 44683047 -99599442 + AT_rich Low_complexity Low_complexity 37 66 0 964 245 32 9 chr12 44683964 44684180 -99598309 + MER58A DNA MER1_type 3 223 -1 894 267 23 9 chr12 44684488 44684721 -99597768 - MIR SINE MIR -4 258 30 244 324 140 31 chr12 44684710 44684932 -99597557 + L2 LINE L2 432 677 -2637 * 601 283 28 11 chr12 44685118 44685298 -99597191 - MER5A DNA MER1_type 0 189 7 1886 113 87 4 chr12 44685812 44686087 -99596402 - AluSx SINE Alu -14 298 1 1787 152 20 10 chr12 44686092 44686394 -99596095 - AluJo SINE Alu -7 305 1 1204 202 38 11 chr12 44686601 44686863 -99595626 + MER33 DNA MER1_type 1 269 -55 447 345 156 26 chr12 44687489 44688194 -99594295 + L2 LINE L2 1990 3233 -39 800 196 53 48 chr12 44688872 44689061 -99593428 - MER20 DNA MER1_type 0 219 30 2266 63 6 51 chr12 44689418 44689733 -99592756 - AluY SINE Alu -10 301 1 278 96 19 0 chr12 44690155 44690207 -99592282 - L1MC4 LINE L1 0 8042 7990 2190 105 14 0 chr12 44690295 44690591 -99591898 - AluSg SINE Alu -10 300 1 246 42 62 0 chr12 44690643 44690691 -99591798 + T-rich Low_complexity Low_complexity 3 53 0 214 212 106 15 chr12 44690841 44690907 -99591582 - L2 LINE L2 -6 3266 3195 1643 180 14 18 chr12 44691486 44691769 -99590720 + AluJb SINE Alu 1 282 -30 249 33 0 0 chr12 44691772 44691802 -99590687 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1317 146 46 0 chr12 44691978 44692197 -99590292 - MER30 DNA MER1_type 0 230 2 2173 126 10 0 chr12 44692275 44692584 -99589905 - AluSx SINE Alu 0 312 1 486 0 0 0 chr12 44693070 44693124 -99589365 + (TTTC)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr12 44693561 44693582 -99588907 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 44694023 44694052 -99588437 + AT_rich Low_complexity Low_complexity 1 29 0 403 331 45 25 chr12 44694272 44694514 -99587975 - L3 LINE CR1 -197 1380 1134 479 312 208 33 chr12 44694551 44695185 -99587304 - L3 LINE CR1 -608 969 225 224 333 35 0 chr12 44695895 44695952 -99586537 - L2 LINE L2 -78 3194 3136 287 182 261 11 chr12 44697951 44698039 -99584450 - MLT1H LTR MaLR -24 525 416 569 259 106 37 chr12 44698157 44698346 -99584143 + MER63A DNA MER1_type 1 202 -8 2249 103 0 16 chr12 44698670 44698982 -99583507 + AluSg SINE Alu 1 307 -3 894 214 42 23 chr12 44701095 44701310 -99581179 - MER20 DNA MER1_type 0 219 1 202 234 85 0 chr12 44701872 44701919 -99580570 - L2 LINE L2 -1 3312 3262 1634 189 17 24 chr12 44702636 44702689 -99579800 + AluJo SINE Alu 1 53 -259 3877 197 20 44 chr12 44702689 44703682 -99578807 + LTR5 LTR ERVK 1 969 0 1634 189 17 24 chr12 44703682 44703925 -99578564 + AluJo SINE Alu 53 295 -17 2112 102 0 51 chr12 44703927 44704061 -99578428 + AluSg SINE Alu 1 140 -170 2257 104 0 7 chr12 44704061 44704370 -99578119 + AluSc SINE Alu 1 307 -2 2112 102 0 51 chr12 44704370 44704550 -99577939 + AluSg SINE Alu 140 299 -11 1236 93 77 0 chr12 44705573 44705756 -99576733 - MER30 DNA MER1_type -33 197 1 845 118 0 76 chr12 44705797 44705941 -99576548 - FLAM_C SINE Alu 0 133 1 194 237 119 0 chr12 44706026 44706085 -99576404 - MIR SINE MIR -105 103 38 2101 102 0 18 chr12 44706235 44706519 -99575970 - AluSx SINE Alu -33 279 1 1979 120 4 0 chr12 44706910 44707184 -99575305 + AluSx SINE Alu 1 275 -37 235 289 189 0 chr12 44707211 44707301 -99575188 + MIR SINE MIR 46 152 -110 538 349 10 24 chr12 44707795 44708004 -99574485 - MIR SINE MIR -33 229 24 21 36 0 0 chr12 44708236 44708264 -99574225 + AT_rich Low_complexity Low_complexity 1 28 0 180 152 0 0 chr12 44710663 44710696 -99571793 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr12 44711144 44711165 -99571324 + AT_rich Low_complexity Low_complexity 1 21 0 1334 177 45 0 chr12 44711514 44711757 -99570732 + AluJo SINE Alu 43 296 -16 1076 162 19 62 chr12 44711798 44712008 -99570481 + AluJb SINE Alu 99 299 -13 324 123 70 0 chr12 44712542 44712599 -99569890 - MSTB2 LTR MaLR 0 457 397 1563 87 78 26 chr12 44712699 44712930 -99569559 - AluSc SINE Alu -20 289 47 679 100 20 10 chr12 44713503 44713603 -99568886 + U6 snRNA snRNA 4 104 -3 244 241 28 65 chr12 44714237 44714345 -99568144 + L1ME4a LINE L1 5975 6078 -43 196 314 95 30 chr12 44714724 44714893 -99567596 - L2 LINE L2 -1252 2062 1883 373 254 51 65 chr12 44715003 44715141 -99567348 + L2 LINE L2 3165 3300 -13 2830 7 0 0 chr12 44715141 44715447 -99567042 + AluYa5 SINE Alu 1 306 -5 604 161 0 0 chr12 44715533 44715626 -99566863 - AluJ/FLAM SINE Alu -213 99 7 336 48 0 0 chr12 44715715 44715757 -99566732 + (TC)n Simple_repeat Simple_repeat 1 42 0 333 0 0 0 chr12 44715756 44715793 -99566696 + (CA)n Simple_repeat Simple_repeat 1 37 0 * 24 0 0 0 chr12 44716169 44716193 -99566296 + AT_rich Low_complexity Low_complexity 1 24 0 1171 136 199 83 chr12 44716380 44716682 -99565807 + MER1B DNA MER1_type 1 337 0 1647 149 69 14 chr12 44716810 44717098 -99565391 - AluJb SINE Alu -8 304 1 189 278 127 63 chr12 44717416 44717542 -99564947 + MIR3 SINE MIR 54 187 -21 2149 110 0 0 chr12 44719206 44719512 -99562977 + AluSq SINE Alu 1 306 0 2313 100 3 0 chr12 44719707 44720007 -99562482 + AluSg SINE Alu 1 301 -9 1010 269 25 12 chr12 44720831 44721046 -99561443 - L1ME3A LINE L1 -9 6144 5922 2409 74 10 0 chr12 44721046 44721344 -99561145 - AluY SINE Alu -10 301 1 1010 269 25 12 chr12 44721344 44721451 -99561038 - L1ME3A LINE L1 -231 5922 5818 1074 214 140 29 chr12 44721454 44722180 -99560309 - L1ME3A LINE L1 -725 5428 4606 1164 228 166 18 chr12 44722206 44722554 -99559935 - MLT1F1 LTR MaLR -119 448 42 1861 123 13 94 chr12 44722554 44722927 -99559562 + MER2 DNA MER2_type 2 344 0 1164 228 166 18 chr12 44722927 44722977 -99559512 - MLT1F1 LTR MaLR -525 42 1 320 243 56 9 chr12 44722988 44723095 -99559394 - L1ME3A LINE L1 -2896 3233 3122 1020 128 0 32 chr12 44723188 44723344 -99559145 + AluSq/x SINE Alu 1 151 -161 364 94 0 0 chr12 44723353 44723406 -99559083 + MADE1 DNA Mariner 27 79 -1 543 289 88 38 chr12 44723497 44723736 -99558753 + MIR SINE MIR 12 262 0 1555 138 86 43 chr12 44723848 44724173 -99558316 - MER44D DNA MER2_type 0 609 1 21 0 0 0 chr12 44725853 44725874 -99556615 + AT_rich Low_complexity Low_complexity 1 21 0 257 244 24 85 chr12 44725893 44726057 -99556432 - L1ME3A LINE L1 -4840 1289 1136 360 119 0 0 chr12 44726221 44726280 -99556209 - L1PB3 LINE L1 -4 6150 6092 282 122 0 0 chr12 44726287 44726328 -99556161 - LTR3b LTR ERVK 0 500 460 804 184 19 6 chr12 44726329 44726487 -99556002 - LTR3b LTR ERVK -4 496 337 5175 151 39 54 chr12 44726487 44726550 -99555939 - L1PB3 LINE L1 -71 6083 6021 2240 103 3 0 chr12 44726550 44726851 -99555638 + AluSx SINE Alu 1 302 -10 2422 74 0 3 chr12 44726852 44727150 -99555339 + AluSg SINE Alu 1 297 -13 5175 151 39 54 chr12 44727150 44728448 -99554041 - L1PB3 LINE L1 -133 6021 4705 309 51 0 0 chr12 44728448 44728487 -99554002 + (TG)n Simple_repeat Simple_repeat 2 40 0 2086 117 3 3 chr12 44728488 44728778 -99553711 - AluSq SINE Alu -23 290 1 5175 151 39 54 chr12 44728778 44728949 -99553540 - L1PB3 LINE L1 -1449 4705 4533 2219 87 10 0 chr12 44728949 44729247 -99553242 - AluSq SINE Alu -11 302 2 5175 151 39 54 chr12 44729247 44729424 -99553065 - L1PB3 LINE L1 -1621 4533 4355 189 0 0 0 chr12 44729424 44729445 -99553044 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 5175 151 39 54 chr12 44729445 44729721 -99552768 - L1PB3 LINE L1 -1799 4355 4124 514 270 105 47 chr12 44729712 44730075 -99552414 - L1ME3A LINE L1 -5155 964 623 * 2262 107 0 3 chr12 44730075 44730384 -99552105 - AluSg SINE Alu -2 308 1 514 270 105 47 chr12 44730384 44730521 -99551968 - L1ME3A LINE L1 -5496 623 266 203 305 68 0 chr12 44730742 44730801 -99551688 - MIR SINE MIR -89 119 57 250 316 44 26 chr12 44730873 44730987 -99551502 - L2 LINE L2 -260 3053 2938 652 268 43 47 chr12 44731295 44731549 -99550940 - MER21B LTR ERV1 -144 719 467 232 268 14 14 chr12 44731589 44731660 -99550829 - MER21B LTR ERV1 -142 721 651 2040 78 0 4 chr12 44732841 44733109 -99549380 - AluY SINE Alu 0 311 45 22 0 0 0 chr12 44733125 44733147 -99549342 + AT_rich Low_complexity Low_complexity 1 22 0 424 323 68 77 chr12 44733319 44733819 -99548670 + L2 LINE L2 2725 3272 0 309 214 119 12 chr12 44733828 44733912 -99548577 - MIR SINE MIR -45 217 125 283 120 0 0 chr12 44733912 44733962 -99548527 + L1MA7 LINE L1 6242 6291 0 2328 103 0 0 chr12 44734148 44734448 -99548041 - AluSx SINE Alu -12 300 1 1119 139 0 12 chr12 44735386 44735552 -99546937 - AluSg/x SINE Alu -14 298 135 350 193 0 12 chr12 44735556 44735639 -99546850 + CT-rich Low_complexity Low_complexity 3 84 0 225 0 0 0 chr12 44736257 44736282 -99546207 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1965 127 0 4 chr12 44736282 44736557 -99545932 - AluSx SINE Alu -32 280 7 30 27 0 0 chr12 44738234 44738271 -99544218 + AT_rich Low_complexity Low_complexity 1 37 0 2194 125 3 0 chr12 44738595 44738892 -99543597 - AluSx SINE Alu -14 298 1 2194 89 12 49 chr12 44739938 44739956 -99542533 - AluSq SINE Alu 0 313 296 522 0 0 0 chr12 44739956 44740014 -99542475 + (TATG)n Simple_repeat Simple_repeat 3 60 0 2194 89 12 49 chr12 44740014 44740320 -99542169 - AluSq SINE Alu -17 296 1 1812 105 102 44 chr12 44740424 44740719 -99541770 - AluSq SINE Alu -1 312 1 288 310 70 56 chr12 44740759 44740901 -99541588 - MIR SINE MIR -72 190 47 2271 119 0 3 chr12 44741256 44741559 -99540930 + AluSx SINE Alu 1 302 -10 2437 65 0 0 chr12 44741660 44741950 -99540539 + AluY SINE Alu 1 290 -21 844 176 198 5 chr12 44742151 44742338 -99540151 - MER58A DNA MER1_type 0 224 2 2115 110 4 0 chr12 44742577 44742886 -99539603 + AluSp SINE Alu 1 310 0 361 284 101 20 chr12 44746163 44746311 -99536178 - L1MC/D LINE L1 -2182 5626 5467 2280 106 0 10 chr12 44746553 44746865 -99535624 - AluSq SINE Alu -3 310 2 1838 109 106 43 chr12 44747002 44747351 -99535138 - THE1C LTR MaLR -4 371 1 2245 102 6 10 chr12 44747477 44747791 -99534698 - AluSp SINE Alu 0 313 1 2224 108 0 19 chr12 44747823 44748139 -99534350 + AluSg SINE Alu 1 310 0 2136 109 30 3 chr12 44748361 44748663 -99533826 - AluSg SINE Alu 0 310 1 919 20 0 0 chr12 44748947 44749047 -99533442 - HY3 scRNA scRNA -1 100 1 2348 69 14 0 chr12 44749058 44749346 -99533143 - AluSx SINE Alu -20 292 1 461 292 141 0 chr12 44749400 44749585 -99532904 - Charlie8 DNA MER1_type -2206 211 1 1147 121 25 0 chr12 44749705 44749862 -99532627 - AluSx SINE Alu -151 161 1 656 200 0 0 chr12 44749965 44750090 -99532399 + AluSp/q SINE Alu 177 301 -12 21 0 0 0 chr12 44750150 44750171 -99532318 + AT_rich Low_complexity Low_complexity 1 21 0 759 107 0 115 chr12 44750238 44750360 -99532129 - FLAM_C SINE Alu -33 110 3 2099 145 3 0 chr12 44750829 44751140 -99531349 - AluSx SINE Alu 0 312 1 228 298 208 30 chr12 44751388 44751556 -99530933 - MIR3 SINE MIR -10 198 1 2308 101 0 3 chr12 44751672 44751969 -99530520 + AluSq SINE Alu 1 296 -17 864 195 24 24 chr12 44751978 44752147 -99530342 - AluJo SINE Alu -20 292 124 732 155 35 0 chr12 44752286 44752402 -99530087 + AluJb SINE Alu 170 289 -23 327 25 0 0 chr12 44752404 44752444 -99530045 + (CA)n Simple_repeat Simple_repeat 1 40 0 237 276 13 0 chr12 44752730 44752806 -99529683 - MLT1J LTR MaLR -23 488 412 243 264 130 61 chr12 44752883 44753104 -99529385 - MLT1J2 LTR MaLR -183 226 31 420 269 10 6 chr12 44753452 44753575 -99528914 - HERVL LTR ERVL -3810 1844 1751 209 247 225 22 chr12 44753869 44753958 -99528531 - L2 LINE L2 -10 3303 3197 3326 160 136 21 chr12 44754091 44754392 -99528097 - MER44D DNA MER2_type -1882 705 440 1919 114 37 4 chr12 44754392 44754663 -99527826 - AluSx SINE Alu -18 294 15 3326 160 136 21 chr12 44754663 44754993 -99527496 - MER44D DNA MER2_type -2147 440 1 26 0 0 0 chr12 44756512 44756538 -99525951 + AT_rich Low_complexity Low_complexity 1 26 0 1905 196 60 51 chr12 44756602 44757056 -99525433 - LTR22A LTR ERVK 0 458 1 1648 133 0 8 chr12 44757059 44757300 -99525189 - HERVK22 LTR ERVK -4 6833 6595 * 21227 91 14 16 chr12 44757289 44760193 -99522296 - HERVK22 LTR ERVK -1538 5299 2403 6059 129 18 3 chr12 44760204 44761093 -99521396 - HERVK22 LTR ERVK -5932 905 4 2239 194 22 35 chr12 44761096 44761560 -99520929 - LTR22A LTR ERVK 0 458 1 993 104 8 0 chr12 44761939 44762073 -99520416 + AluSq/x SINE Alu 1 135 -178 1216 146 0 5 chr12 44762880 44763065 -99519424 + AluSx SINE Alu 1 184 -128 646 204 9 0 chr12 44763065 44763178 -99519311 + MLT1D LTR MaLR 299 412 -93 777 227 61 0 chr12 44763178 44763376 -99519113 + L1MC2 LINE L1 2680 2889 -3257 * 5060 181 44 83 chr12 44763362 44763944 -99518545 + L1MC2 LINE L1 4239 4842 -1502 1943 99 7 42 chr12 44763944 44764260 -99518229 + AluSx SINE Alu 11 316 0 5060 181 44 83 chr12 44764260 44764857 -99517632 + L1MC2 LINE L1 4842 5461 -883 2338 99 0 6 chr12 44764857 44765169 -99517320 + AluSg SINE Alu 1 310 0 5060 181 44 83 chr12 44765169 44766245 -99516244 + L1MC2 LINE L1 5461 6339 -5 363 214 56 22 chr12 44766312 44766401 -99516088 + MIR SINE MIR 154 245 -17 1388 190 65 0 chr12 44766810 44767057 -99515432 + Tigger7 DNA MER2_type 1 263 -470 556 159 11 0 chr12 44767062 44767150 -99515339 + Tigger7 DNA MER2_type 2492 2580 -7 202 349 64 9 chr12 44767224 44767333 -99515156 - L2 LINE L2 -940 2374 2260 209 274 210 6 chr12 44767546 44767703 -99514786 - L2 LINE L2 -1268 2046 1858 826 180 148 6 chr12 44767710 44767893 -99514596 - MER3 DNA MER1_type 0 209 1 2179 115 3 0 chr12 44768766 44769070 -99513419 + AluSx SINE Alu 1 305 -7 755 226 68 11 chr12 44769183 44769373 -99513116 - MER21B LTR ERV1 -187 676 476 1602 104 5 0 chr12 44769395 44769617 -99512872 - L1PA11 LINE L1 -100 6074 5852 729 235 62 28 chr12 44769623 44769802 -99512687 - MER21B LTR ERV1 -379 484 300 22 0 0 0 chr12 44769802 44769824 -99512665 + AT_rich Low_complexity Low_complexity 1 22 0 1512 150 45 4 chr12 44769889 44770136 -99512353 + Tigger2a DNA MER2_type 1 257 -177 1897 92 4 4 chr12 44770137 44770387 -99512102 + AluY SINE Alu 1 250 -61 1904 101 54 25 chr12 44772965 44773271 -99509218 + AluSq SINE Alu 1 314 0 794 194 65 54 chr12 44773271 44773457 -99509032 + Tigger2a DNA MER2_type 257 444 0 192 143 0 0 chr12 44773462 44773504 -99508985 + (TG)n Simple_repeat Simple_repeat 2 43 0 1073 256 51 22 chr12 44773542 44773815 -99508674 - MER21B LTR ERV1 -571 292 12 24 0 0 0 chr12 44774762 44774786 -99507703 + AT_rich Low_complexity Low_complexity 1 24 0 6214 133 12 14 chr12 44774984 44776442 -99506047 - L1PB1 LINE L1 -8 6143 4688 405 0 0 0 chr12 44777529 44777574 -99504915 + (TG)n Simple_repeat Simple_repeat 1 45 0 2213 104 0 7 chr12 44778060 44778357 -99504132 + AluSg SINE Alu 1 295 -15 2181 89 12 49 chr12 44778368 44778674 -99503815 + AluSq SINE Alu 1 296 -17 414 0 0 0 chr12 44778674 44778720 -99503769 + (CATA)n Simple_repeat Simple_repeat 3 48 0 2181 89 12 49 chr12 44778720 44778738 -99503751 + AluSq SINE Alu 296 313 0 2194 125 3 0 chr12 44779782 44780079 -99502410 + AluSx SINE Alu 1 298 -14 30 27 0 0 chr12 44780403 44780440 -99502049 + AT_rich Low_complexity Low_complexity 1 37 0 1966 127 0 4 chr12 44782117 44782392 -99500097 + AluSx SINE Alu 7 280 -32 225 0 0 0 chr12 44782392 44782417 -99500072 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 192 77 0 0 chr12 44783035 44783061 -99499428 + (GA)n Simple_repeat Simple_repeat 1 26 0 2205 110 3 0 chr12 44783274 44783574 -99498915 + AluSp SINE Alu 1 301 -12 23 78 0 0 chr12 44783610 44783661 -99498828 + AT_rich Low_complexity Low_complexity 1 51 0 2048 144 16 0 chr12 44784427 44784733 -99497756 - AluSx SINE Alu -1 311 1 210 276 102 39 chr12 44784794 44784921 -99497568 - MIR3 SINE MIR -48 160 26 781 258 164 24 chr12 44786090 44786388 -99496101 - L2 LINE L2 0 3313 2974 234 0 0 0 chr12 44787227 44787253 -99495236 + (A)n Simple_repeat Simple_repeat 1 26 0 270 0 0 0 chr12 44788445 44788475 -99494014 + (T)n Simple_repeat Simple_repeat 1 30 0 736 171 9 0 chr12 44792057 44792168 -99490321 - FLAM_A SINE Alu -18 124 13 2214 109 10 0 chr12 44792518 44792811 -99489678 - AluSq SINE Alu -16 297 2 413 210 40 48 chr12 44794382 44794506 -99487983 + L1MC4 LINE L1 7919 8041 -1 229 65 0 0 chr12 44794952 44794998 -99487491 - LTR66 LTR ERVL -171 439 394 416 135 14 0 chr12 44795012 44795086 -99487403 + (TA)n Simple_repeat Simple_repeat 2 76 0 2243 92 4 0 chr12 44795086 44795387 -99487102 - AluSp SINE Alu 0 302 1 1647 155 7 22 chr12 44795528 44795799 -99486690 + AluJb SINE Alu 1 267 -45 1089 76 0 0 chr12 44795862 44795994 -99486495 + AluSp SINE Alu 1 132 -181 1582 100 5 0 chr12 44795996 44796196 -99486293 + AluSp SINE Alu 1 201 -112 701 126 0 18 chr12 44796308 44796419 -99486070 - AluSq/x SINE Alu -203 110 2 21 0 0 0 chr12 44796564 44796585 -99485904 + AT_rich Low_complexity Low_complexity 1 21 0 296 89 22 0 chr12 44796867 44796912 -99485577 - Alu SINE Alu -253 46 1 186 43 0 0 chr12 44797011 44797034 -99485455 + (TTA)n Simple_repeat Simple_repeat 1 23 0 249 94 0 0 chr12 44797036 44797068 -99485421 - Alu SINE Alu -20 113 82 224 325 181 25 chr12 44797076 44797236 -99485253 - L2 LINE L2 0 3272 3088 342 242 226 0 chr12 44797767 44797891 -99484598 - MIR3 SINE MIR 0 208 57 2304 97 13 0 chr12 44799833 44800133 -99482356 + AluSg1 SINE Alu 1 304 -5 2277 114 0 0 chr12 44800141 44800448 -99482041 + AluSx SINE Alu 1 307 -5 364 323 2 22 chr12 44800743 44800896 -99481593 + MER5A DNA MER1_type 1 161 -28 1742 138 0 0 chr12 44800956 44801195 -99481294 + AluSx SINE Alu 1 239 -73 364 326 2 22 chr12 44801722 44801875 -99480614 + MER5A DNA MER1_type 1 161 -28 2242 132 0 0 chr12 44801935 44802245 -99480244 + AluSx SINE Alu 1 310 -2 2193 114 7 0 chr12 44802503 44802810 -99479679 - AluSg SINE Alu -1 309 1 22 0 0 0 chr12 44804402 44804424 -99478065 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 44805026 44805049 -99477440 + AT_rich Low_complexity Low_complexity 1 23 0 1914 154 0 11 chr12 44805055 44805364 -99477125 + AluJo SINE Alu 1 306 0 310 296 0 0 chr12 44805367 44805455 -99477034 + L1MC4 LINE L1 6613 6700 -1342 210 222 0 0 chr12 44805465 44805519 -99476970 + (TA)n Simple_repeat Simple_repeat 1 54 0 2262 103 0 22 chr12 44806120 44806431 -99476058 - AluSc SINE Alu -5 304 1 186 43 0 0 chr12 44806976 44806999 -99475490 + (A)n Simple_repeat Simple_repeat 1 23 0 1957 100 0 76 chr12 44807612 44807937 -99474552 + AluSx SINE Alu 5 306 0 2245 109 17 0 chr12 44807942 44808236 -99474253 + AluSx SINE Alu 1 299 -13 418 304 172 0 chr12 44808342 44808546 -99473943 + MIR SINE MIR 11 249 -13 835 162 0 37 chr12 44809025 44809161 -99473328 - AluJb SINE Alu -180 132 2 1853 169 3 6 chr12 44809189 44809502 -99472987 + AluJb SINE Alu 1 312 0 667 197 15 51 chr12 44809516 44809653 -99472836 + AluJo SINE Alu 3 134 -178 16002 114 41 20 chr12 44809817 44810096 -99472393 + Tigger1 DNA MER2_type 4 276 -2142 2428 66 7 13 chr12 44810096 44810399 -99472090 - AluY SINE Alu -10 301 1 16002 114 41 20 chr12 44810399 44811770 -99470719 + Tigger1 DNA MER2_type 276 1617 -801 2163 95 10 16 chr12 44811770 44812076 -99470413 + AluSx SINE Alu 1 304 -8 16002 114 41 20 chr12 44812076 44812131 -99470358 + Tigger1 DNA MER2_type 1617 1669 -749 1359 136 45 129 chr12 44812131 44812261 -99470228 + AluJo SINE Alu 1 140 -172 1610 169 65 7 chr12 44812261 44812424 -99470065 - AluJb SINE Alu -12 300 113 261 0 0 0 chr12 44812424 44812453 -99470036 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1610 169 65 7 chr12 44812453 44812568 -99469921 - AluJb SINE Alu -199 113 6 1359 136 45 129 chr12 44812568 44812769 -99469720 + AluJo SINE Alu 140 304 -8 16002 114 41 20 chr12 44812769 44812835 -99469654 + Tigger1 DNA MER2_type 1669 1732 -686 2318 113 0 0 chr12 44812835 44813135 -99469354 - AluSx SINE Alu -12 300 1 16002 114 41 20 chr12 44813135 44813726 -99468763 + Tigger1 DNA MER2_type 1732 2418 0 214 205 0 0 chr12 44813744 44813783 -99468706 + T-rich Low_complexity Low_complexity 1 39 0 1004 196 0 0 chr12 44813784 44813947 -99468542 - FRAM SINE Alu -2 164 2 1762 93 37 0 chr12 44814288 44814534 -99467955 - L1MA2 LINE L1 0 6304 6050 30 0 0 0 chr12 44814601 44814631 -99467858 + AT_rich Low_complexity Low_complexity 1 30 0 263 217 14 43 chr12 44814774 44814843 -99467646 - L2 LINE L2 -37 3276 3210 1029 162 0 0 chr12 44815386 44815540 -99466949 + AluJb SINE Alu 129 282 -30 25 0 0 0 chr12 44815542 44815567 -99466922 + AT_rich Low_complexity Low_complexity 1 25 0 2085 123 3 19 chr12 44815576 44815884 -99466605 + AluSx SINE Alu 1 303 -9 2011 123 16 3 chr12 44817063 44817371 -99465118 - AluSq SINE Alu -1 312 1 791 245 78 16 chr12 44867405 44867650 -99414839 + L1ME1 LINE L1 5905 6164 -2 344 323 85 87 chr12 44867928 44868330 -99414159 + L2 LINE L2 2870 3270 -2 180 306 163 20 chr12 44868527 44868625 -99413864 + L2 LINE L2 3149 3260 -12 638 174 91 8 chr12 44868626 44868758 -99413731 + FLAM_C SINE Alu 1 143 0 261 75 0 0 chr12 44869472 44869512 -99412977 + (CA)n Simple_repeat Simple_repeat 1 40 0 339 167 0 64 chr12 44869852 44869930 -99412559 - MER96 DNA MER1_type? 0 175 103 613 320 93 6 chr12 44870037 44870359 -99412130 + L2 LINE L2 2963 3312 -1 897 265 70 54 chr12 44870611 44871053 -99411436 - MLT1G LTR MaLR 0 590 142 1422 199 3 17 chr12 44871302 44871593 -99410896 + AluJb SINE Alu 3 289 -23 504 317 10 20 chr12 44871943 44872145 -99410344 - MLT1G1-int LTR MaLR -884 487 288 238 275 92 25 chr12 44872138 44872258 -99410231 - MLT1G1-int LTR MaLR -1227 144 17 * 408 245 24 64 chr12 44872272 44872394 -99410095 - MLT1G1 LTR MaLR 0 590 435 1738 152 26 26 chr12 44872394 44872697 -99409792 + AluSx SINE Alu 5 307 -5 408 245 24 64 chr12 44872697 44872764 -99409725 - MLT1G1 LTR MaLR -155 435 367 644 260 114 14 chr12 44872814 44873033 -99409456 - MLT1G1 LTR MaLR -276 319 79 201 121 0 0 chr12 44873126 44873159 -99409330 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 198 352 42 35 chr12 44873221 44873363 -99409126 + L2 LINE L2 3171 3313 0 22 35 0 0 chr12 44874303 44874332 -99408157 + AT_rich Low_complexity Low_complexity 1 29 0 3148 105 138 61 chr12 44874685 44875273 -99407216 + MER51A LTR ERV1 2 634 0 395 329 91 4 chr12 44875380 44875611 -99406878 + MIR SINE MIR 12 262 0 391 122 200 22 chr12 44875736 44875826 -99406663 + MER41A LTR ERV1 361 466 -88 184 376 64 38 chr12 44877408 44877565 -99404924 + MIR SINE MIR 20 180 -82 622 242 72 18 chr12 44877727 44878114 -99404375 + MLT1G3 LTR MaLR 1 503 -87 3701 123 57 22 chr12 44878117 44878743 -99403746 + MER51A LTR ERV1 1 638 -2 488 176 35 0 chr12 44878746 44878831 -99403658 + MLT1G3 LTR MaLR 503 590 0 222 318 16 0 chr12 44880395 44880458 -99402031 - MIR SINE MIR -186 76 13 1723 134 124 3 chr12 44880724 44881014 -99401475 - MER7A DNA MER2_type 0 346 24 295 277 59 91 chr12 44882081 44882301 -99400188 + MLT1J LTR MaLR 99 311 -200 2421 190 61 65 chr12 44882417 44883074 -99399415 - MLT1E1 LTR MaLR 0 654 1 1485 91 0 0 chr12 44883181 44883368 -99399121 - AluY SINE Alu -70 241 55 1369 167 5 0 chr12 44883481 44883696 -99398793 - AluJo SINE Alu -19 293 78 309 306 32 79 chr12 44883877 44884093 -99398396 + MIR SINE MIR 20 225 -37 291 316 91 52 chr12 44884132 44884363 -99398126 - L2 LINE L2 0 3272 3033 635 253 129 39 chr12 44884403 44884636 -99397853 - MIR SINE MIR 0 262 9 183 304 188 52 chr12 44884827 44885829 -99396660 - L2 LINE L2 -538 2776 1639 1179 163 25 10 chr12 44885839 44886035 -99396454 + AluJb SINE Alu 91 289 -23 1254 246 115 41 chr12 44886282 44887027 -99395462 - L2 LINE L2 0 3313 2503 602 263 148 69 chr12 44887740 44888219 -99394270 + LTR33A LTR ERVL 5 521 -2 597 274 98 42 chr12 44888223 44888650 -99393839 - L1ME4a LINE L1 -28 6093 5643 231 365 0 0 chr12 44888651 44888725 -99393764 + L2 LINE L2 3193 3266 -47 653 264 66 6 chr12 44889719 44889901 -99392588 + MIR SINE MIR 43 235 -27 200 333 12 25 chr12 44890352 44890433 -99392056 - L3 LINE CR1 -48 1529 1450 11612 95 22 19 chr12 44890752 44893599 -99388890 + L1PA7 LINE L1 13 2873 -3588 20919 91 19 1 chr12 44893600 44897259 -99385230 + L1PA7 LINE L1 2784 6462 -7 200 147 0 0 chr12 44897318 44897352 -99385137 - L3 LINE CR1 -576 1001 968 309 320 32 32 chr12 44897519 44897644 -99384845 - L3 LINE CR1 -922 655 531 1683 202 30 46 chr12 44897682 44898053 -99384436 - MLT1A1 LTR MaLR 0 365 1 316 242 157 39 chr12 44898064 44898217 -99384272 + MIR SINE MIR 64 234 -28 2338 91 17 0 chr12 44898336 44898634 -99383855 - AluY SINE Alu -8 303 1 22 0 0 0 chr12 44898846 44898868 -99383621 + AT_rich Low_complexity Low_complexity 1 22 0 258 305 186 26 chr12 44898997 44899223 -99383266 + MIR SINE MIR 1 262 0 480 179 0 0 chr12 44900593 44900671 -99381818 - MER3 DNA MER1_type -124 85 8 1573 272 177 32 chr12 44900739 44901141 -99381348 + L2 LINE L2 7 349 -2965 1740 160 10 14 chr12 44901141 44901429 -99381060 + AluJo SINE Alu 7 293 -19 1573 272 177 32 chr12 44901429 44901717 -99380772 + L2 LINE L2 349 797 -2517 667 133 100 0 chr12 44901717 44901837 -99380652 - MER65A LTR ERV1 0 445 314 780 170 0 50 chr12 44901838 44901979 -99380510 - FLAM_A SINE Alu -1 141 8 1795 145 7 14 chr12 44901980 44902263 -99380226 - MER65A LTR ERV1 -125 320 40 41798 46 9 3 chr12 44902678 44903364 -99379125 - L1PA4 LINE L1 -8 6147 5467 207 0 0 0 chr12 44903364 44903387 -99379102 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 41798 46 9 3 chr12 44903387 44908602 -99373887 - L1PA4 LINE L1 -688 5467 209 787 167 0 8 chr12 44909273 44909405 -99373084 - MSTB LTR MaLR -85 341 211 5101 277 124 29 chr12 44909452 44911760 -99370729 + L2 LINE L2 789 3311 -2 304 239 141 0 chr12 44911845 44911937 -99370552 + MIR SINE MIR 80 184 -78 1668 196 10 7 chr12 44912000 44912301 -99370188 - AluJo SINE Alu -8 304 3 683 258 59 16 chr12 44912417 44912603 -99369886 + MIR SINE MIR 56 249 -13 29 0 0 0 chr12 44913595 44913624 -99368865 + AT_rich Low_complexity Low_complexity 1 29 0 218 233 156 22 chr12 44914274 44914364 -99368125 - MIR3 SINE MIR -103 105 4 392 298 39 39 chr12 44914923 44915104 -99367385 + MER5A DNA MER1_type 7 187 -2 2728 94 30 6 chr12 44915305 44915667 -99366822 + THE1C LTR MaLR 5 375 0 290 298 161 43 chr12 44915785 44916064 -99366425 - L2 LINE L2 -5 3308 2997 561 330 54 18 chr12 44916164 44916385 -99366104 - MIR SINE MIR -14 248 20 596 283 132 9 chr12 44916525 44916737 -99365752 - MIR SINE MIR -16 246 9 282 316 59 0 chr12 44918105 44918241 -99364248 + MIR3 SINE MIR 11 154 -54 257 224 75 0 chr12 44922498 44922565 -99359924 - MIR3 SINE MIR -39 169 98 199 174 43 0 chr12 44923246 44923292 -99359197 - L2 LINE L2 -9 3263 3216 2192 157 57 12 chr12 44923378 44923780 -99358709 + L1MB1 LINE L1 5528 5947 -221 409 298 135 23 chr12 44923805 44924020 -99358469 - Charlie8 DNA MER1_type -2174 243 5 23 0 0 0 chr12 44924621 44924644 -99357845 + AT_rich Low_complexity Low_complexity 1 23 0 402 276 172 0 chr12 44924724 44924858 -99357631 - MIR3 SINE MIR -8 200 44 213 173 0 58 chr12 44925122 44925174 -99357315 + L2 LINE L2 3224 3272 0 262 283 61 20 chr12 44925598 44925697 -99356792 + MIR SINE MIR 90 192 -70 450 0 0 0 chr12 44926788 44926838 -99355651 + (TG)n Simple_repeat Simple_repeat 2 51 0 591 287 51 0 chr12 44928368 44928525 -99353964 - MIR SINE MIR -1 261 97 2530 182 81 84 chr12 44928758 44929473 -99353016 + LTR8A LTR ERV1 1 713 -14 2412 128 78 67 chr12 44930433 44930880 -99351609 + LTR47A LTR ERVL 1 452 0 358 331 26 13 chr12 44931003 44931157 -99351332 - MIR SINE MIR -12 250 95 2083 140 7 0 chr12 44932513 44932820 -99349669 - AluSx SINE Alu -3 309 1 232 211 67 11 chr12 44933172 44933262 -99349227 + L1ME2 LINE L1 1072 1166 -4953 828 121 35 12 chr12 44933272 44933445 -99349044 + CT-rich Low_complexity Low_complexity 2 178 0 2099 148 7 0 chr12 44933462 44933837 -99348652 - AluSq SINE Alu 0 377 1 599 305 39 25 chr12 44933849 44934134 -99348355 + HAL1 LINE L1 1281 1569 -938 560 259 43 0 chr12 44934179 44934295 -99348194 - MIR SINE MIR -136 126 6 1168 294 109 45 chr12 44934340 44934524 -99347965 + L1ME2 LINE L1 3322 3493 -2611 2207 112 0 3 chr12 44934524 44934819 -99347670 + AluSg SINE Alu 1 294 -16 1168 294 109 45 chr12 44934819 44935735 -99346754 + L1ME2 LINE L1 3493 4349 -1755 1907 126 59 54 chr12 44935735 44936108 -99346381 + THE1C LTR MaLR 1 375 0 1168 294 109 45 chr12 44936108 44936660 -99345829 + L1ME2 LINE L1 4349 4864 -1240 1591 145 44 14 chr12 44936660 44936956 -99345533 + L1MA4 LINE L1 5996 6300 0 1168 294 109 45 chr12 44936956 44937848 -99344641 + L1ME2 LINE L1 4864 5999 -105 186 43 0 0 chr12 44938199 44938222 -99344267 + (TA)n Simple_repeat Simple_repeat 1 23 0 377 198 70 70 chr12 44938226 44938279 -99344210 + L1ME LINE L1 5264 5316 -862 1471 141 62 8 chr12 44938279 44938520 -99343969 + L1PB1 LINE L1 5895 6148 -3 377 198 70 70 chr12 44938520 44938623 -99343866 + L1ME LINE L1 5315 5420 -758 356 229 143 9 chr12 44938739 44938844 -99343645 + L1ME LINE L1 5412 5530 -636 283 367 57 0 chr12 44942020 44942178 -99340311 + MIR SINE MIR 15 181 -81 32 26 0 0 chr12 44943044 44943083 -99339406 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr12 44943947 44943972 -99338517 + AT_rich Low_complexity Low_complexity 1 25 0 278 197 279 49 chr12 44943997 44944119 -99338370 - MER20 DNA MER1_type -17 202 53 223 258 186 32 chr12 44944358 44944482 -99338007 - MIR SINE MIR -10 252 110 1149 281 65 12 chr12 44944870 44945208 -99337281 + MLT1J1 LTR MaLR 2 357 -89 537 220 130 34 chr12 44945246 44945423 -99337066 - MER63A DNA MER1_type -16 194 1 2025 252 65 31 chr12 44946082 44946135 -99336354 - MLT1G1 LTR MaLR 0 595 545 2252 88 3 3 chr12 44946135 44946439 -99336050 + AluSp SINE Alu 1 304 0 2025 252 65 31 chr12 44946439 44946956 -99335533 - MLT1G1 LTR MaLR -50 545 5 263 363 0 0 chr12 44947206 44947286 -99335203 - L2 LINE L2 0 3313 3234 2395 46 0 40 chr12 44948251 44948554 -99333935 + AluY SINE Alu 20 310 -1 450 320 184 39 chr12 44949467 44949956 -99332533 + L2 LINE L2 2743 3308 -5 235 238 0 0 chr12 44949968 44950010 -99332479 + L2 LINE L2 3210 3251 -21 496 312 72 34 chr12 44950407 44950644 -99331845 - MIR SINE MIR -10 252 7 3147 219 54 37 chr12 44952376 44953154 -99329335 + MER21B LTR ERV1 1 791 -72 1226 151 94 124 chr12 44953927 44954298 -99328191 - MLT1B LTR MaLR -20 370 11 238 380 20 20 chr12 44954411 44954511 -99327978 - L2 LINE L2 -181 3091 2992 1024 157 0 24 chr12 44954880 44955046 -99327443 + AluJb SINE Alu 134 295 -17 256 143 48 0 chr12 44955062 44955103 -99327386 - MER33 DNA MER1_type -22 302 260 1172 202 53 7 chr12 44955103 44955550 -99326939 - MLT1D LTR MaLR 0 505 9 289 132 108 70 chr12 44955546 44955572 -99326917 - MER33 DNA MER1_type -2318 306 282 * 1737 149 76 0 chr12 44955572 44955847 -99326642 + AluSx SINE Alu 1 296 -16 289 132 108 70 chr12 44955847 44956010 -99326479 - MER33 DNA MER1_type -2342 282 41 566 227 61 0 chr12 44956864 44956996 -99325493 + MIR SINE MIR 9 148 -114 1166 187 4 61 chr12 44958093 44958323 -99324166 + MER20 DNA MER1_type 3 219 0 451 289 116 53 chr12 44958811 44959036 -99323453 + MIR SINE MIR 21 259 -3 644 279 77 18 chr12 44960300 44960540 -99321949 - MIR SINE MIR -1 261 11 186 133 0 0 chr12 44963295 44963325 -99319164 + (TCCA)n Simple_repeat Simple_repeat 4 33 0 1129 138 6 17 chr12 44964195 44964376 -99318113 - AluSg/x SINE Alu -2 310 132 342 0 0 0 chr12 44964379 44964417 -99318072 + (TG)n Simple_repeat Simple_repeat 2 39 0 1859 162 0 0 chr12 44964417 44964701 -99317788 - AluSx SINE Alu -28 284 1 1019 300 106 30 chr12 44965098 44965673 -99316816 + MLT2F LTR ERVL 7 593 -35 373 262 23 70 chr12 44965995 44966167 -99316322 - L2 LINE L2 -938 2376 2213 228 286 91 69 chr12 44966323 44966498 -99315991 + MLT1I LTR MaLR 83 261 -148 410 322 40 10 chr12 44966719 44966921 -99315568 - L2 LINE L2 -1213 2101 1894 223 314 91 8 chr12 44966929 44967050 -99315439 - L2 LINE L2 -1890 1424 1294 183 239 0 0 chr12 44967310 44967356 -99315133 + (TCCA)n Simple_repeat Simple_repeat 4 49 0 400 303 53 15 chr12 44968553 44968685 -99313804 - L2 LINE L2 0 3272 3136 602 273 0 0 chr12 44970893 44971025 -99311464 + L1 LINE L1 2604 2735 -3411 1627 178 14 14 chr12 44971282 44971575 -99310914 - AluJo SINE Alu -14 298 6 23 0 0 0 chr12 44971669 44971692 -99310797 + AT_rich Low_complexity Low_complexity 1 23 0 2579 46 0 7 chr12 44971788 44972095 -99310394 + AluY SINE Alu 7 311 0 2481 42 10 39 chr12 44972278 44972590 -99309899 + AluY SINE Alu 1 303 -8 2105 123 3 3 chr12 44972740 44973033 -99309456 - AluSx SINE Alu -18 294 2 347 160 13 0 chr12 44973485 44973560 -99308929 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 411 286 21 7 chr12 44973772 44973912 -99308577 + CT-rich Low_complexity Low_complexity 1 142 0 254 195 24 73 chr12 44973947 44974029 -99308460 + L1MC4 LINE L1 6626 6703 -1339 318 206 0 0 chr12 44974032 44974100 -99308389 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 4662 136 60 73 chr12 44975431 44976312 -99306177 - MER4D LTR ERV1 0 872 3 186 227 0 0 chr12 44976314 44976358 -99306131 + (TA)n Simple_repeat Simple_repeat 2 45 0 229 219 137 0 chr12 44976397 44976470 -99306019 - MIR SINE MIR -83 179 97 201 211 197 0 chr12 44976670 44976746 -99305743 - MIR SINE MIR -119 143 53 810 279 42 70 chr12 44977571 44977926 -99304563 - MLT1J1 LTR MaLR -7 439 95 293 247 0 25 chr12 44978045 44978126 -99304363 - LTR67 LTR ERVL -14 543 465 228 35 0 0 chr12 44978332 44978361 -99304128 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 465 253 133 125 chr12 44978820 44979188 -99303301 - MLT1K LTR MaLR -8 580 210 942 219 149 108 chr12 44979365 44979867 -99302622 - MLT1H LTR MaLR -24 525 3 273 118 0 0 chr12 44979985 44980036 -99302453 + (GA)n Simple_repeat Simple_repeat 1 51 0 2592 59 0 0 chr12 44980909 44981215 -99301274 - AluY SINE Alu -5 306 1 2400 81 0 0 chr12 44983278 44983576 -99298913 - AluY SINE Alu -13 298 1 25 65 0 0 chr12 44984098 44984144 -99298345 + AT_rich Low_complexity Low_complexity 1 46 0 271 259 49 37 chr12 44984482 44984563 -99297926 + L2 LINE L2 3152 3233 -39 536 272 195 38 chr12 44985185 44985579 -99296910 - L2 LINE L2 -16 3297 2842 471 309 149 3 chr12 44985617 44985905 -99296584 - L2 LINE L2 -1978 1336 1007 2605 212 16 4 chr12 44985911 44986411 -99296078 - LTR53 LTR ERVL 0 519 14 403 254 36 85 chr12 44986440 44986664 -99295825 - L2 LINE L2 -2333 981 769 229 270 0 54 chr12 44986935 44987009 -99295480 + L2 LINE L2 3235 3304 -9 583 295 16 107 chr12 44987166 44987532 -99294957 - L2 LINE L2 0 3272 2940 1131 171 41 19 chr12 44987988 44988230 -99294259 + MLT1E LTR MaLR 355 592 -1 380 310 26 0 chr12 44988231 44988344 -99294145 + MIR SINE MIR 144 259 -3 2071 77 88 3 chr12 44988782 44989067 -99293422 - AluY SINE Alu -2 309 1 1756 168 31 3 chr12 44989733 44990024 -99292465 - AluJo SINE Alu -13 299 1 225 0 0 0 chr12 44991005 44991030 -99291459 + (T)n Simple_repeat Simple_repeat 1 25 0 590 364 90 45 chr12 44992005 44992580 -99289909 + L2 LINE L2 2309 2909 -405 1457 113 0 33 chr12 44993562 44993775 -99288714 - AluSq SINE Alu -107 206 1 208 103 0 0 chr12 44995138 44995167 -99287322 + MER5A DNA MER1_type 1 29 -160 510 290 72 0 chr12 44995227 44995365 -99287124 + MER5A DNA MER1_type 31 178 -11 5950 145 17 31 chr12 44995395 44996120 -99286369 - L1MA6 LINE L1 0 6300 5567 2163 111 0 13 chr12 44996120 44996426 -99286063 - AluY SINE Alu -9 302 1 5950 145 17 31 chr12 44996426 44997763 -99284726 - L1MA6 LINE L1 -733 5567 4261 2197 155 78 32 chr12 44997763 44998163 -99284326 - Tigger4(Zombi) DNA MER2_type -2313 418 1 271 318 47 0 chr12 44998190 44998275 -99284214 + MIR3 SINE MIR 103 191 -17 5438 195 26 7 chr12 44998591 44999888 -99282601 - L1M2 LINE L1 -4171 3038 1617 511 257 66 143 chr12 44999915 45000187 -99282302 + MIR SINE MIR 12 262 0 362 231 31 0 chr12 45000349 45000452 -99282037 + L1M2 LINE L1 1751 1856 -5353 423 0 0 0 chr12 45001291 45001338 -99281151 + (TCCA)n Simple_repeat Simple_repeat 2 48 0 409 264 9 27 chr12 45001787 45001897 -99280592 + MIR SINE MIR 36 143 -65 2124 130 7 0 chr12 45002117 45002424 -99280065 + AluSx SINE Alu 4 312 0 2099 218 43 45 chr12 45002496 45003051 -99279438 - MLT2B3 LTR ERVL 0 554 1 681 265 27 16 chr12 45004075 45004260 -99278229 - MIR SINE MIR -27 235 49 498 216 81 95 chr12 45004478 45004545 -99277944 - MER20 DNA MER1_type 0 219 153 222 37 0 0 chr12 45004545 45004572 -99277917 + (TGGG)n Simple_repeat Simple_repeat 1 27 0 498 216 81 95 chr12 45004572 45004726 -99277763 - MER20 DNA MER1_type -66 153 1 514 337 158 17 chr12 45005974 45006691 -99275798 - L1MC4a LINE L1 -754 5392 5191 1149 191 75 97 chr12 45006952 45007279 -99275210 - MLT1A1 LTR MaLR -2 363 43 1841 172 3 7 chr12 45007279 45007576 -99274913 + AluSx SINE Alu 1 296 -16 1149 191 75 97 chr12 45007576 45007619 -99274870 - MLT1A1 LTR MaLR -322 43 1 22 56 0 0 chr12 45007690 45007726 -99274763 + AT_rich Low_complexity Low_complexity 1 36 0 14940 180 32 14 chr12 45007770 45012224 -99270265 - L1PB1 LINE L1 0 6867 2493 2091 125 0 3 chr12 45012224 45012512 -99269977 + AluSq SINE Alu 2 288 -25 14940 180 32 14 chr12 45012512 45012766 -99269723 - L1PB1 LINE L1 -4374 2493 2245 1772 122 111 7 chr12 45012766 45013045 -99269444 - AluSg1 SINE Alu -1 308 1 14940 180 32 14 chr12 45013045 45013313 -99269176 - L1PB1 LINE L1 -4622 2245 1833 2006 141 10 0 chr12 45013500 45013806 -99268683 - AluSx SINE Alu -3 309 1 4754 137 63 4 chr12 45013806 45015351 -99267138 - L1PBa LINE L1 -4755 2108 327 596 182 61 0 chr12 45015350 45015482 -99267007 - L1MC3 LINE L1 -24 7761 7622 * 6903 235 86 55 chr12 45015488 45018598 -99263891 - L1MA9 LINE L1 -37 6339 3328 189 0 0 0 chr12 45018598 45018619 -99263870 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 6903 235 86 55 chr12 45018619 45018867 -99263622 - L1MA9 LINE L1 -3048 3328 3089 1839 172 17 0 chr12 45018867 45019163 -99263326 - AluSq SINE Alu -11 302 2 6903 235 86 55 chr12 45019163 45020868 -99261621 - L1MA9 LINE L1 -3287 3089 1273 1991 148 7 0 chr12 45020868 45021166 -99261323 - AluSx SINE Alu -12 300 1 6903 235 86 55 chr12 45021166 45022466 -99260023 - L1MA9 LINE L1 -5103 1273 15 21 0 0 0 chr12 45022639 45022660 -99259829 + AT_rich Low_complexity Low_complexity 1 21 0 196 387 19 9 chr12 45023456 45023562 -99258927 - L2 LINE L2 -20 3293 3187 2684 42 0 0 chr12 45023814 45024125 -99258364 - AluY SINE Alu 0 311 1 219 329 64 36 chr12 45024125 45024265 -99258224 + L2 LINE L2 3159 3302 -11 450 307 29 87 chr12 45026079 45026356 -99256133 - MIR SINE MIR 0 262 2 449 271 186 10 chr12 45026432 45026631 -99255858 + MLT1L LTR MaLR 1 234 -381 2031 144 0 0 chr12 45026645 45026936 -99255553 + AluSx SINE Alu 1 291 -21 4596 138 19 4 chr12 45026943 45027208 -99255281 + L1MA5 LINE L1 5519 5778 -522 780 111 0 0 chr12 45027208 45027325 -99255164 + (TA)n Simple_repeat Simple_repeat 1 117 0 4596 138 19 4 chr12 45027325 45027829 -99254660 + L1MA5 LINE L1 5778 6300 0 643 315 68 22 chr12 45028052 45028376 -99254113 + MLT1L LTR MaLR 229 567 -48 360 291 16 39 chr12 45029477 45029604 -99252885 + L2 LINE L2 3122 3245 -27 320 304 46 80 chr12 45030999 45031050 -99251439 - MIR SINE MIR -17 245 194 1888 154 3 3 chr12 45031050 45031342 -99251147 - AluSx SINE Alu -14 298 7 320 304 46 80 chr12 45031342 45031527 -99250962 - MIR SINE MIR -68 194 17 218 218 18 18 chr12 45035183 45035238 -99247251 + CT-rich Low_complexity Low_complexity 1 55 0 2078 168 37 31 chr12 45035531 45036075 -99246414 - MLT2A2 LTR ERVL -4 550 1 1940 150 0 17 chr12 45037841 45038141 -99244348 + AluJb SINE Alu 1 295 -17 337 331 163 3 chr12 45038347 45038716 -99243773 - L1M4 LINE L1 -3043 3103 2676 356 280 161 21 chr12 45038913 45039199 -99243290 - L1M4 LINE L1 -3711 2435 2110 2146 86 7 7 chr12 45039609 45039932 -99242557 - AluSc SINE Alu 0 323 1 21 36 0 0 chr12 45043255 45043283 -99239206 + AT_rich Low_complexity Low_complexity 1 28 0 457 232 0 13 chr12 45043545 45043700 -99238789 + (TA)n Simple_repeat Simple_repeat 1 153 0 538 278 60 0 chr12 45043732 45043865 -99238624 - MIR SINE MIR -121 141 1 3286 106 26 25 chr12 45046735 45047266 -99235223 - L1MC1 LINE L1 -17 6316 5785 254 310 155 55 chr12 45048547 45049334 -99233155 - L2 LINE L2 -36 3236 2380 1369 220 15 42 chr12 45050698 45051000 -99231489 - L1ME1 LINE L1 -4 6162 5872 1658 168 3 67 chr12 45051000 45051315 -99231174 - AluJb SINE Alu -17 295 1 1369 220 15 42 chr12 45051315 45051421 -99231068 - L1ME1 LINE L1 -294 5872 5765 195 319 121 11 chr12 45051458 45051549 -99230940 - L2 LINE L2 -13 3300 3200 550 321 194 16 chr12 45051787 45052075 -99230414 - L2 LINE L2 -461 2853 2618 1831 193 3 3 chr12 45052075 45052386 -99230103 + AluJb SINE Alu 1 311 -1 550 321 194 16 chr12 45052386 45052664 -99229825 - L2 LINE L2 -696 2618 2186 220 350 32 57 chr12 45052662 45052785 -99229704 + L2 LINE L2 3153 3272 0 * 222 288 0 41 chr12 45053213 45053286 -99229203 + L2 LINE L2 3001 3070 -202 214 275 239 0 chr12 45053345 45053454 -99229035 + MIR SINE MIR 20 154 -108 240 111 0 0 chr12 45053515 45053560 -99228929 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 532 229 110 28 chr12 45054023 45054241 -99228248 - L1ME3A LINE L1 -4 6149 5914 2667 207 11 14 chr12 45054290 45054938 -99227551 - L1 LINE L1 -1379 4767 4122 1403 214 87 36 chr12 45054940 45055313 -99227176 - L1ME3A LINE L1 -339 5806 5403 2152 121 3 3 chr12 45055313 45055611 -99226878 + AluSc SINE Alu 1 298 -11 1403 214 87 36 chr12 45055611 45055709 -99226780 - L1ME3A LINE L1 -742 5403 5311 446 302 37 41 chr12 45055739 45055981 -99226508 - L1ME3A LINE L1 -1000 5129 4889 572 262 49 13 chr12 45055996 45056221 -99226268 - L1ME3A LINE L1 -1318 4811 4579 * 5262 230 69 58 chr12 45056213 45056852 -99225637 - L1MC3 LINE L1 -15 7770 7140 2204 116 7 7 chr12 45056852 45057153 -99225336 - AluSx SINE Alu -11 301 1 5262 230 69 58 chr12 45057153 45057793 -99224696 - L1MC3 LINE L1 -645 7140 6509 2036 158 15 0 chr12 45057793 45058134 -99224355 + MER7A DNA MER2_type 3 346 0 5262 230 69 58 chr12 45058134 45059361 -99223128 - L1MC3 LINE L1 -1276 6509 5237 428 18 0 18 chr12 45059361 45059418 -99223071 - L1PA4 LINE L1 -11 6144 6089 5262 230 69 58 chr12 45059418 45059837 -99222652 - L1MC3 LINE L1 -2548 5237 4824 279 281 90 11 chr12 45059845 45060023 -99222466 - L1ME3A LINE L1 -1537 4592 4401 18641 47 2 0 chr12 45060208 45063149 -99219340 - L1PA4 LINE L1 -256 5899 2953 1065 301 81 11 chr12 45063150 45063595 -99218894 + LTR33 LTR ERVL 30 505 -16 328 343 36 0 chr12 45063608 45063748 -99218741 - L1ME3A LINE L1 -4673 1456 1312 539 263 22 47 chr12 45063912 45064190 -99218299 - L1ME3A LINE L1 -4928 1191 921 453 332 152 47 chr12 45064206 45064800 -99217689 - L1ME3A LINE L1 -5194 925 270 337 238 127 24 chr12 45064863 45064989 -99217500 - L1ME3A LINE L1 -5940 179 41 187 326 136 0 chr12 45065313 45065460 -99217029 - L2 LINE L2 -994 2320 2154 861 276 63 12 chr12 45066240 45066559 -99215930 - L1MEc LINE L1 -6025 371 37 1219 156 0 35 chr12 45066674 45066905 -99215584 + AluSg/x SINE Alu 76 298 -14 334 250 67 19 chr12 45067154 45067258 -99215231 + L2 LINE L2 3205 3313 0 2211 123 0 10 chr12 45067262 45067571 -99214918 + AluSg SINE Alu 1 306 -4 241 267 105 48 chr12 45067593 45067698 -99214791 + L2 LINE L2 3203 3313 0 266 252 151 42 chr12 45069799 45069918 -99212571 + L2 LINE L2 3138 3269 -3 334 300 67 17 chr12 45069933 45070053 -99212436 - MIR SINE MIR -87 175 50 793 127 190 0 chr12 45070304 45070462 -99212027 - MER53 DNA DNA -1 188 1 259 220 0 0 chr12 45070769 45070819 -99211670 + L2 LINE L2 3263 3312 -1 2072 87 111 18 chr12 45070851 45071184 -99211305 - THE1B LTR MaLR 0 364 1 243 0 0 0 chr12 45071282 45071309 -99211180 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 458 313 0 0 chr12 45071494 45071628 -99210861 + MER94 DNA DNA 1 134 0 1178 155 0 0 chr12 45071629 45071803 -99210686 - AluJo SINE Alu -10 302 129 900 181 7 0 chr12 45071824 45071968 -99210521 - AluJo SINE Alu -161 151 7 795 299 57 45 chr12 45072292 45072463 -99210026 - MLT1I LTR MaLR 0 409 242 2181 111 3 0 chr12 45072463 45072761 -99209728 - AluSx SINE Alu -13 299 1 795 299 57 45 chr12 45072761 45072993 -99209496 - MLT1I LTR MaLR -167 242 1 222 298 95 0 chr12 45073387 45073471 -99209018 - L2 LINE L2 -39 3274 3183 714 197 0 0 chr12 45074065 45074192 -99208297 - AluJo SINE Alu -173 129 3 206 269 90 15 chr12 45074363 45074430 -99208059 - MIR SINE MIR -115 147 76 1653 176 7 7 chr12 45074634 45074923 -99207566 - AluJb SINE Alu -17 295 7 2993 159 33 42 chr12 45075129 45075799 -99206690 - MER39 LTR ERV1 -2 705 1 204 40 0 0 chr12 45075830 45075855 -99206634 + (A)n Simple_repeat Simple_repeat 1 25 0 1732 153 12 53 chr12 45075855 45076176 -99206313 + AluJb SINE Alu 3 310 -2 238 319 51 43 chr12 45076497 45076635 -99205854 + L2 LINE L2 3133 3271 -1 2331 101 0 3 chr12 45077020 45077318 -99205171 + AluSx SINE Alu 1 297 -15 491 246 99 58 chr12 45077823 45078014 -99204475 - MIR SINE MIR -33 229 31 2936 159 25 9 chr12 45078066 45078637 -99203852 - L1MC3 LINE L1 0 7785 7206 578 276 75 15 chr12 45079019 45079218 -99203271 - MIR SINE MIR -34 228 18 244 299 23 46 chr12 45079288 45079375 -99203114 - MIR SINE MIR -152 110 26 482 275 101 43 chr12 45080038 45080296 -99202193 - L2 LINE L2 -888 2426 2154 225 296 41 20 chr12 45083689 45083787 -99198702 + MIR3 SINE MIR 78 177 -31 825 229 151 63 chr12 45085119 45085629 -99196860 + MLT1H1 LTR MaLR 1 555 0 347 308 140 26 chr12 45085765 45085989 -99196500 - MIR SINE MIR -14 248 8 * 416 259 211 14 chr12 45085979 45086126 -99196363 + L2 LINE L2 3096 3271 -1 206 309 12 25 chr12 45088049 45088130 -99194359 + L3b LINE CR1 1408 1487 -96 317 382 7 28 chr12 45088395 45088539 -99193950 - L2 LINE L2 -16 3256 3116 1116 210 133 39 chr12 45088565 45088980 -99193509 + MLT1C LTR MaLR 8 461 -6 190 296 120 19 chr12 45089039 45089147 -99193342 - L2 LINE L2 -219 3053 2935 1701 167 13 54 chr12 45089251 45089368 -99193121 + AluJb SINE Alu 1 121 -191 261 0 0 0 chr12 45089368 45089397 -99193092 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1701 167 13 54 chr12 45089397 45089424 -99193065 + AluJb SINE Alu 121 148 -164 2244 120 0 0 chr12 45089424 45089715 -99192774 + AluSx SINE Alu 5 295 -17 1701 167 13 54 chr12 45089715 45089886 -99192603 + AluJb SINE Alu 148 304 -8 355 331 18 6 chr12 45090521 45090690 -99191799 - L2 LINE L2 -871 2443 2273 1563 220 57 41 chr12 45090930 45091390 -99191099 - MLT1C LTR MaLR 0 467 1 339 270 90 9 chr12 45091654 45091765 -99190724 - MIR SINE MIR -65 143 24 186 43 0 0 chr12 45091770 45091793 -99190696 + (TATG)n Simple_repeat Simple_repeat 2 24 0 490 217 11 0 chr12 45091924 45092016 -99190473 + MER81 DNA DNA 1 93 -21 367 289 9 0 chr12 45092233 45092347 -99190142 - LTR33 LTR ERVL -401 120 6 193 205 26 26 chr12 45092347 45092386 -99190103 - L2 LINE L2 -24 3248 3210 * 454 264 42 14 chr12 45092352 45092496 -99189993 - MIR SINE MIR -22 240 93 197 323 21 52 chr12 45092527 45092623 -99189866 - L2 LINE L2 -30 3283 3191 482 268 14 64 chr12 45092646 45092866 -99189623 - L2 LINE L2 0 3313 3105 4252 34 2 0 chr12 45093069 45093601 -99188888 - L1PA3 LINE L1 -1542 4604 4072 7495 31 6 0 chr12 45093601 45095138 -99187351 + L1PA3 LINE L1 4614 6155 0 300 298 61 28 chr12 45095160 45095341 -99187148 + L1MEc LINE L1 1572 1758 -4638 1756 126 27 10 chr12 45096024 45096318 -99186171 + AluSx SINE Alu 1 299 -13 285 279 95 63 chr12 45096644 45096802 -99185687 - MLT1K LTR MaLR -9 579 417 299 397 35 7 chr12 45096909 45097050 -99185439 + L2 LINE L2 3127 3271 -1 38 39 0 0 chr12 45097181 45097233 -99185256 + AT_rich Low_complexity Low_complexity 1 52 0 245 351 95 12 chr12 45098901 45099069 -99183420 + L3b LINE CR1 1296 1477 -106 4098 89 41 12 chr12 45099607 45100246 -99182243 + L1MA2 LINE L1 5648 6304 0 2193 123 0 0 chr12 45100254 45100547 -99181942 + AluSx SINE Alu 1 293 -19 378 289 169 6 chr12 45101232 45101398 -99181091 + L3 LINE CR1 1222 1414 -163 2651 144 19 2 chr12 45101768 45102447 -99180042 - L1PA16 LINE L1 -492 5674 4981 2682 143 13 17 chr12 45102447 45102916 -99179573 + L1PA16 LINE L1 5695 6166 0 221 222 56 0 chr12 45103674 45103728 -99178761 - MIR SINE MIR -17 245 189 228 202 96 21 chr12 45104429 45104523 -99177966 - L1PB1 LINE L1 0 6151 6051 1772 211 26 7 chr12 45104868 45105290 -99177199 + L1MEc LINE L1 512 941 -5455 1331 273 58 73 chr12 45105341 45106423 -99176066 + L1MEc LINE L1 748 1813 -4583 1752 172 53 20 chr12 45106736 45107038 -99175451 + AluJo SINE Alu 1 312 0 228 217 0 0 chr12 45107524 45107570 -99174919 + Tigger5 DNA MER2_type 10 55 -2268 * 383 208 0 0 chr12 45107539 45107611 -99174878 + Tigger5 DNA MER2_type 2251 2322 -1 21 0 0 0 chr12 45108631 45108652 -99173837 + AT_rich Low_complexity Low_complexity 1 21 0 426 297 138 42 chr12 45109379 45109880 -99172609 + L1MEc LINE L1 682 1230 -4975 358 270 55 57 chr12 45109886 45110304 -99172185 + L1MEc LINE L1 1100 1516 -4701 1597 275 73 35 chr12 45110435 45110825 -99171664 + L1MEc LINE L1 1875 2249 -3966 2281 115 0 3 chr12 45110825 45111129 -99171360 + AluSg1 SINE Alu 1 303 -6 1597 275 73 35 chr12 45111129 45112302 -99170187 + L1MEc LINE L1 2249 3445 -2770 1834 194 9 0 chr12 45112342 45112683 -99169806 - MER2 DNA MER2_type 0 344 1 270 116 0 0 chr12 45112698 45112741 -99169748 + (CA)n Simple_repeat Simple_repeat 1 43 0 1062 286 6 0 chr12 45112750 45113100 -99169389 + L1MEc LINE L1 3588 3939 -2276 1513 192 40 29 chr12 45113215 45113590 -99168899 - L1 LINE L1 -3544 2602 2224 2272 123 0 0 chr12 45113982 45114282 -99168207 - AluSx SINE Alu -12 300 1 344 310 84 65 chr12 45114705 45114860 -99167629 - L2 LINE L2 0 3272 3115 429 299 137 25 chr12 45115203 45115407 -99167082 - L2 LINE L2 -2 3270 3044 191 304 217 0 chr12 45115429 45115521 -99166968 + L2 LINE L2 3202 3313 0 254 171 14 0 chr12 45115825 45115895 -99166594 + GA-rich Low_complexity Low_complexity 2 72 0 329 250 67 17 chr12 45116664 45116844 -99165645 + L1ME4a LINE L1 5543 5731 -390 257 304 118 28 chr12 45116865 45117154 -99165335 + L1ME4a LINE L1 5805 6119 -2 25 65 0 0 chr12 45117157 45117203 -99165286 + AT_rich Low_complexity Low_complexity 1 46 0 856 257 19 19 chr12 45118208 45118465 -99164024 + MIR SINE MIR 6 262 0 219 225 42 14 chr12 45118795 45118866 -99163623 + MIR SINE MIR 70 142 -66 1798 106 23 0 chr12 45119590 45119855 -99162634 + L1PA14 LINE L1 5890 6160 -1 1928 134 17 7 chr12 45119896 45120188 -99162301 + AluSx SINE Alu 1 295 -17 828 282 108 35 chr12 45120412 45120866 -99161623 - MLT1J LTR MaLR 0 511 25 982 121 64 0 chr12 45120878 45121035 -99161454 - AluSq SINE Alu -11 302 136 2320 63 10 7 chr12 45121037 45121338 -99161151 - AluY SINE Alu -9 302 1 474 284 82 0 chr12 45121341 45121475 -99161014 + MER5A DNA MER1_type 1 145 -44 4440 174 58 17 chr12 45122114 45123898 -99158591 - L1MA9 LINE L1 -40 6272 4404 360 267 74 30 chr12 45126898 45127033 -99155456 - MIR SINE MIR -110 152 12 795 163 0 0 chr12 45127485 45127638 -99154851 - L1MEc LINE L1 -3135 3080 2928 21 0 0 0 chr12 45127638 45127659 -99154830 + AT_rich Low_complexity Low_complexity 1 21 0 229 118 0 0 chr12 45127662 45127696 -99154793 + L1PA8 LINE L1 6099 6132 -40 * 22556 155 23 20 chr12 45127692 45133287 -99149202 - L1PA10 LINE L1 -46 6437 814 1888 238 70 23 chr12 45133298 45133709 -99148780 - L1MEc LINE L1 -3296 2919 2529 1385 197 75 14 chr12 45133709 45134003 -99148486 - AluJo SINE Alu 0 312 1 1888 238 70 23 chr12 45134003 45134438 -99148051 - L1MEc LINE L1 -3686 2529 2066 1293 245 72 33 chr12 45134441 45135013 -99147476 - L1MEc LINE L1 -4361 2035 1442 23 0 0 0 chr12 45135743 45135766 -99146723 + AT_rich Low_complexity Low_complexity 1 23 0 363 157 0 0 chr12 45136252 45136322 -99146167 + (TATG)n Simple_repeat Simple_repeat 2 71 0 2785 90 0 3 chr12 45136379 45136744 -99145745 - THE1B LTR MaLR 0 364 1 339 374 92 37 chr12 45137836 45138218 -99144271 + L2 LINE L2 2862 3264 -8 185 359 72 27 chr12 45138603 45138865 -99143624 + L2 LINE L2 2448 2721 -593 700 349 70 39 chr12 45140318 45141105 -99141384 + L2 LINE L2 2448 3267 -5 2135 131 35 3 chr12 45142601 45142945 -99139544 + THE1A LTR MaLR 1 355 0 11892 83 10 2 chr12 45142945 45144513 -99137976 + THE1A-int LTR MaLR 1 1580 0 2400 110 8 8 chr12 45144513 45144868 -99137621 + THE1A LTR MaLR 1 355 0 1221 282 20 25 chr12 45145050 45145561 -99136928 - HAL1 LINE L1 -318 2189 1682 187 224 24 82 chr12 45146385 45146470 -99136019 - MIR SINE MIR -130 132 53 217 308 93 61 chr12 45147396 45147643 -99134846 + L2 LINE L2 2530 2784 -530 1304 181 50 82 chr12 45149105 45149481 -99133008 + MLT1A2 LTR MaLR 1 364 -10 308 259 0 12 chr12 45149554 45149635 -99132854 + L2 LINE L2 3207 3286 -27 183 80 0 0 chr12 45149650 45149675 -99132814 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 1385 241 32 3 chr12 45149847 45150192 -99132297 - L1MD3 LINE L1 -173 7822 7468 1768 177 45 20 chr12 45150247 45150603 -99131886 + MLT1A1 LTR MaLR 1 365 0 2160 117 0 0 chr12 45151806 45152112 -99130377 - AluSx SINE Alu 0 306 1 379 271 53 85 chr12 45152759 45152947 -99129542 - L1MEd LINE L1 -5934 185 4 319 250 25 0 chr12 45153455 45153535 -99128954 - MIR SINE MIR 0 262 181 261 331 32 57 chr12 45153878 45154035 -99128454 - L2 LINE L2 -9 3304 3152 252 281 101 105 chr12 45155413 45155636 -99126853 - MIR SINE MIR -24 238 15 539 346 5 0 chr12 45156038 45156226 -99126263 - MIR3 SINE MIR 0 208 20 513 294 44 39 chr12 45156332 45156512 -99125977 + MIR SINE MIR 18 198 -64 372 43 0 0 chr12 45156682 45156728 -99125761 + (CA)n Simple_repeat Simple_repeat 1 46 0 361 289 118 52 chr12 45156772 45157077 -99125412 - MLT1J LTR MaLR -95 416 92 525 104 0 0 chr12 45157678 45157755 -99124734 + (TG)n Simple_repeat Simple_repeat 1 77 0 220 118 0 0 chr12 45158264 45158298 -99124191 + MIR SINE MIR 215 248 -14 213 192 0 19 chr12 45158267 45158319 -99124170 + L2 LINE L2 3263 3313 0 * 22 0 0 0 chr12 45158661 45158683 -99123806 + AT_rich Low_complexity Low_complexity 1 22 0 555 278 73 21 chr12 45159098 45159289 -99123200 + MIR SINE MIR 18 218 -44 416 319 89 38 chr12 45159277 45159792 -99122697 + L2 LINE L2 2760 3298 -15 * 220 245 19 0 chr12 45159829 45159882 -99122607 + MIR SINE MIR 197 250 -12 187 294 20 0 chr12 45159928 45159979 -99122510 - L2 LINE L2 -213 3059 3008 285 29 0 0 chr12 45161421 45161455 -99121034 + (CA)n Simple_repeat Simple_repeat 1 34 0 268 233 95 17 chr12 45161529 45161645 -99120844 + L1ME LINE L1 89 213 -5992 1061 258 77 86 chr12 45161895 45162685 -99119804 + L1ME LINE L1 523 1305 -4900 285 332 15 24 chr12 45162813 45163018 -99119471 + HAL1 LINE L1 1449 1651 -856 323 296 27 27 chr12 45163307 45163531 -99118958 + L1ME LINE L1 2172 2355 -3860 * 334 235 157 6 chr12 45163530 45163696 -99118793 + L1ME LINE L1 5439 5629 -610 506 192 43 42 chr12 45163697 45163841 -99118648 + L1ME LINE L1 5752 5895 -352 970 182 6 0 chr12 45164138 45164297 -99118192 + FRAM SINE Alu 1 160 -6 468 269 122 0 chr12 45164383 45164539 -99117950 - MIR SINE MIR -51 211 37 1912 146 35 0 chr12 45164576 45164864 -99117625 + AluSx SINE Alu 1 298 -14 396 0 0 0 chr12 45165499 45165543 -99116946 + (TA)n Simple_repeat Simple_repeat 1 44 0 271 297 50 10 chr12 45165571 45165672 -99116817 + MIR SINE MIR 23 127 -135 735 262 24 67 chr12 45166152 45166506 -99115983 - MER34 LTR ERV1 -1 541 252 1775 176 0 14 chr12 45166506 45166796 -99115693 + AluJo SINE Alu 6 291 -21 735 262 24 67 chr12 45166796 45167038 -99115451 - MER34 LTR ERV1 -290 252 1 512 282 105 14 chr12 45167266 45167475 -99115014 + MIR SINE MIR 20 247 -15 21 36 0 0 chr12 45168961 45168989 -99113500 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 45169151 45169173 -99113316 + AT_rich Low_complexity Low_complexity 1 22 0 462 339 51 31 chr12 45174304 45174561 -99107928 + L3b LINE CR1 1288 1549 -34 5173 120 25 15 chr12 45174660 45175661 -99106828 + L1PA13 LINE L1 5153 6162 -1 21 0 0 0 chr12 45175684 45175705 -99106784 + AT_rich Low_complexity Low_complexity 1 21 0 424 226 24 61 chr12 45175926 45176090 -99106399 + MER5B DNA MER1_type 20 177 -1 240 86 0 0 chr12 45176258 45176293 -99106196 + (T)n Simple_repeat Simple_repeat 1 35 0 24 53 0 0 chr12 45179453 45179491 -99102998 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr12 45179818 45179849 -99102640 + AT_rich Low_complexity Low_complexity 1 31 0 1954 130 10 7 chr12 45181054 45181346 -99101143 + AluSq SINE Alu 1 293 -20 317 327 49 37 chr12 45181450 45181612 -99100877 + L2 LINE L2 2892 3055 -217 575 316 22 30 chr12 45181765 45181996 -99100493 - MIR SINE MIR -31 231 3 363 286 54 27 chr12 45182712 45182824 -99099665 + L2 LINE L2 3153 3267 -5 2565 40 0 7 chr12 45183315 45183612 -99098877 + AluY SINE Alu 1 295 -16 22 0 0 0 chr12 45183684 45183706 -99098783 + AT_rich Low_complexity Low_complexity 1 22 0 183 244 22 0 chr12 45184272 45184317 -99098172 + L2 LINE L2 1364 1409 -1905 282 346 49 0 chr12 45185191 45185272 -99097217 + L2 LINE L2 3192 3276 -37 198 270 286 0 chr12 45185307 45185370 -99097119 - L2 LINE L2 -37 3235 3155 180 191 0 44 chr12 45186694 45186762 -99095727 + GA-rich Low_complexity Low_complexity 5 69 0 399 41 0 0 chr12 45186941 45186990 -99095499 + (TG)n Simple_repeat Simple_repeat 1 49 0 2302 87 0 3 chr12 45187281 45187580 -99094909 - AluSx SINE Alu -14 298 1 2075 105 56 0 chr12 45188725 45189010 -99093479 - AluSq SINE Alu -4 309 9 258 306 35 12 chr12 45189226 45189311 -99093178 + L3 LINE CR1 1345 1431 -146 220 273 15 0 chr12 45189974 45190040 -99092449 + CT-rich Low_complexity Low_complexity 1 67 0 1079 257 102 42 chr12 45190893 45190933 -99091556 - MLT1G LTR MaLR 0 590 554 2156 128 0 0 chr12 45190933 45191238 -99091251 + AluSp SINE Alu 1 305 -8 1079 257 102 42 chr12 45191238 45191775 -99090714 - MLT1G LTR MaLR -36 554 12 453 329 43 6 chr12 45191831 45191992 -99090497 - MIR SINE MIR -74 188 22 354 45 0 0 chr12 45192669 45192713 -99089776 + (TG)n Simple_repeat Simple_repeat 1 44 0 1639 158 36 88 chr12 45193221 45193632 -99088857 - MLT1B LTR MaLR 0 390 1 461 354 40 0 chr12 45194053 45194228 -99088261 - MIR SINE MIR -70 192 11 3602 95 15 2 chr12 45194457 45194985 -99087504 + L1PA14 LINE L1 5627 6161 0 2452 281 156 43 chr12 45197260 45198420 -99084069 + L2 LINE L2 393 1707 -1607 2141 98 21 0 chr12 45198420 45198707 -99083782 + AluSx SINE Alu 1 293 -19 2452 281 156 43 chr12 45198707 45198800 -99083689 + L2 LINE L2 1707 1788 -1526 297 0 0 0 chr12 45199484 45199517 -99082972 + (TG)n Simple_repeat Simple_repeat 2 34 0 210 255 21 0 chr12 45201147 45201194 -99081295 + L3 LINE CR1 1529 1576 -1 334 263 0 0 chr12 45201479 45201559 -99080930 - ERVL LTR ERVL -5210 554 475 528 277 31 19 chr12 45201579 45201738 -99080751 + MLT2E LTR ERVL 330 490 -138 1055 257 104 25 chr12 45202161 45202697 -99079792 - MLT2E LTR ERVL -2 626 1 352 327 22 48 chr12 45203091 45203360 -99079129 + LTR67 LTR ERVL 262 523 -34 297 207 0 0 chr12 45203365 45203423 -99079066 - MER5A DNA MER1_type -105 84 27 2176 289 72 12 chr12 45203712 45204771 -99077718 + L2 LINE L2 2196 3313 0 228 252 17 50 chr12 45205279 45205398 -99077091 - L1ME4a LINE L1 -3 6118 6004 357 287 96 18 chr12 45205416 45205583 -99076906 - L1ME4a LINE L1 -199 5922 5743 1886 160 131 8 chr12 45205613 45205994 -99076495 + MSTA LTR MaLR 1 428 0 7914 143 113 10 chr12 45205996 45207418 -99075071 + MSTA-int LTR MaLR 3 1571 -9 1293 136 103 8 chr12 45207420 45207662 -99074827 + MSTA LTR MaLR 164 428 0 320 246 18 102 chr12 45208381 45208548 -99073941 - MIR SINE MIR -89 173 21 21 0 0 0 chr12 45208752 45208773 -99073716 + AT_rich Low_complexity Low_complexity 1 21 0 6078 143 43 41 chr12 45208957 45209196 -99073293 + L1MA7 LINE L1 4710 4947 -1344 302 77 0 0 chr12 45209196 45209235 -99073254 + MER4D LTR ERV1 760 798 -74 6078 143 43 41 chr12 45209235 45210539 -99071950 + L1MA7 LINE L1 4947 6291 0 220 357 10 0 chr12 45210615 45210713 -99071776 + MER5B DNA MER1_type 5 103 -75 401 299 8 22 chr12 45210892 45211026 -99071463 - MIR SINE MIR -11 251 120 3630 102 32 2 chr12 45211232 45211770 -99070719 - MER41A LTR ERV1 0 554 1 1994 97 17 10 chr12 45211795 45212084 -99070405 + AluSc SINE Alu 1 291 -18 238 259 14 7 chr12 45212105 45212254 -99070235 + CT-rich Low_complexity Low_complexity 1 150 0 2146 221 60 28 chr12 45212275 45212809 -99069680 - MER74A LTR ERVL -7 551 1 25 51 0 0 chr12 45212977 45213016 -99069473 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr12 45213188 45213219 -99069270 + AT_rich Low_complexity Low_complexity 1 31 0 431 314 54 27 chr12 45213927 45214112 -99068377 - MIR SINE MIR -59 203 14 201 232 36 18 chr12 45215333 45215389 -99067100 + MIR3 SINE MIR 152 208 0 22 0 0 0 chr12 45217205 45217227 -99065262 + AT_rich Low_complexity Low_complexity 1 22 0 201 354 38 13 chr12 45217812 45217891 -99064598 - MIR3 SINE MIR -24 184 104 1457 211 36 11 chr12 45217895 45218251 -99064238 + MLT1A1 LTR MaLR 1 365 0 876 182 4 103 chr12 45218559 45218801 -99063688 - MER20 DNA MER1_type -1 218 1 202 244 0 0 chr12 45218883 45218924 -99063565 + GA-rich Low_complexity Low_complexity 3 43 0 225 206 78 108 chr12 45220829 45220931 -99061558 + AluSg SINE Alu 38 136 -164 252 0 0 0 chr12 45222522 45222550 -99059939 + (TG)n Simple_repeat Simple_repeat 1 28 0 252 0 0 0 chr12 45222549 45222577 -99059912 + (GA)n Simple_repeat Simple_repeat 1 28 0 14971 123 23 11 chr12 45222991 45225382 -99057107 - Tigger1 DNA MER2_type 0 2418 1 837 111 0 15 chr12 45225749 45225884 -99056605 + FLAM_C SINE Alu 1 133 0 598 124 9 9 chr12 45225958 45226071 -99056418 + (TTTC)n Simple_repeat Simple_repeat 4 116 0 980 356 83 22 chr12 45226185 45227166 -99055323 + L2 LINE L2 1819 3312 -1 1574 206 64 40 chr12 45228754 45229205 -99053284 + MLT1C LTR MaLR 6 467 0 587 350 140 38 chr12 45229209 45230176 -99052313 + L2 LINE L2 1733 2797 -517 237 296 228 4 chr12 45230206 45230456 -99052033 + L2 LINE L2 2959 3264 -8 274 254 70 28 chr12 45231238 45231380 -99051109 - L1ME4a LINE L1 -14 6107 5960 207 0 0 0 chr12 45231586 45231609 -99050880 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 248 278 104 35 chr12 45231704 45231947 -99050542 - L1ME4a LINE L1 -542 5579 5321 26 64 0 0 chr12 45232074 45232121 -99050368 + AT_rich Low_complexity Low_complexity 1 47 0 228 302 50 32 chr12 45232201 45232479 -99050010 - L1ME4a LINE L1 -1090 5056 4774 4216 174 63 31 chr12 45232824 45233650 -99048839 - MER21B LTR ERV1 -11 852 1 2171 128 28 28 chr12 45233848 45234207 -99048282 - THE1B LTR MaLR -5 359 1 21 36 0 0 chr12 45234280 45234308 -99048181 + AT_rich Low_complexity Low_complexity 1 28 0 403 309 93 71 chr12 45234445 45234937 -99047552 - L1ME4a LINE L1 -2310 3836 3334 9604 198 53 5 chr12 45235287 45238168 -99044321 + L1PA15 LINE L1 3236 6165 0 311 331 39 34 chr12 45238475 45238653 -99043836 - L1ME4a LINE L1 -3734 2412 2234 301 382 6 13 chr12 45238850 45239007 -99043482 + L2 LINE L2 2002 2157 -1157 201 327 0 0 chr12 45239005 45239057 -99043432 - L2 LINE L2 -233 3039 2988 * 223 261 62 0 chr12 45239075 45239140 -99043349 + L2 LINE L2 2183 2251 -1063 268 324 56 42 chr12 45239409 45239551 -99042938 + L2 LINE L2 3170 3313 0 23 0 0 0 chr12 45240919 45240942 -99041547 + AT_rich Low_complexity Low_complexity 1 23 0 276 150 0 0 chr12 45240955 45240995 -99041494 - Alu SINE Alu -263 40 1 270 229 0 0 chr12 45241044 45241114 -99041375 + (TA)n Simple_repeat Simple_repeat 1 70 0 26 0 0 0 chr12 45241714 45241740 -99040749 + AT_rich Low_complexity Low_complexity 1 26 0 2105 135 0 0 chr12 45242361 45242657 -99039832 - AluSx SINE Alu -16 296 1 313 218 71 100 chr12 45242867 45243037 -99039452 - MIR SINE MIR -52 210 46 425 106 149 11 chr12 45243401 45243495 -99038994 - MER5C DNA MER1_type -143 181 75 564 218 182 6 chr12 45243587 45243757 -99038732 + MIR SINE MIR 36 235 -27 1429 182 42 10 chr12 45244722 45245030 -99037459 + MER33 DNA MER1_type 2 319 -5 351 248 96 8 chr12 45245334 45245459 -99037030 - MIR SINE MIR -81 181 46 21 36 0 0 chr12 45245672 45245700 -99036789 + AT_rich Low_complexity Low_complexity 1 28 0 191 256 85 61 chr12 45246763 45246845 -99035644 - L3b LINE CR1 -324 1259 1176 1417 284 67 52 chr12 45247379 45247977 -99034512 + ERVL-E LTR ERVL 4825 5431 -333 377 289 59 7 chr12 45248146 45248281 -99034208 + ERVL-E LTR ERVL 5604 5745 -19 397 352 7 0 chr12 45248302 45248444 -99034045 + MLT2E LTR ERVL 34 176 -452 267 300 103 43 chr12 45248421 45248768 -99033721 + MLT2E LTR ERVL 320 621 -7 * 24 0 0 0 chr12 45248841 45248865 -99033624 + AT_rich Low_complexity Low_complexity 1 24 0 342 284 10 0 chr12 45249673 45249775 -99032714 - MLT1L LTR MaLR 0 615 513 2360 165 26 2 chr12 45249920 45250338 -99032151 + MSTA LTR MaLR 1 428 0 277 247 45 0 chr12 45250609 45250698 -99031791 + L1 LINE L1 2989 3081 -3065 313 212 0 9 chr12 45250745 45250858 -99031631 + L1 LINE L1 3080 3191 -2955 1446 140 67 74 chr12 45250858 45251143 -99031346 + AluJo SINE Alu 1 283 -29 463 160 113 0 chr12 45251143 45251249 -99031240 + MER5C DNA MER1_type 71 188 -136 4270 195 40 4 chr12 45251362 45252328 -99030161 + L1 LINE L1 3176 4176 -1970 236 77 26 0 chr12 45253087 45253126 -99029363 + (TA)n Simple_repeat Simple_repeat 1 40 0 264 344 178 32 chr12 45253276 45254155 -99028334 + L2 LINE L2 1611 2617 -697 * 304 242 74 21 chr12 45254124 45254219 -99028270 + L2 LINE L2 3173 3272 0 23 33 0 0 chr12 45256091 45256121 -99026368 + AT_rich Low_complexity Low_complexity 1 30 0 228 352 80 37 chr12 45256402 45256564 -99025925 + L2 LINE L2 2931 3099 -173 327 258 152 32 chr12 45257227 45257444 -99025045 - L1ME4a LINE L1 -111 6010 5768 223 102 20 20 chr12 45257459 45257508 -99024981 + (TA)n Simple_repeat Simple_repeat 1 49 0 23 33 0 0 chr12 45257523 45257553 -99024936 + AT_rich Low_complexity Low_complexity 1 30 0 456 346 120 37 chr12 45257808 45258645 -99023844 - L2 LINE L2 -17 3296 2378 2180 119 16 0 chr12 45259021 45259324 -99023165 + AluSq SINE Alu 6 313 0 353 19 0 57 chr12 45259402 45259455 -99023034 - L1PA3 LINE L1 -3 6152 6103 268 293 91 0 chr12 45259484 45259583 -99022906 + MER117 DNA MER1_type 3 110 -87 2364 181 9 12 chr12 45259640 45260071 -99022418 - MLT2C2 LTR ERVL -34 430 1 214 291 205 0 chr12 45261895 45262012 -99020477 - MIR SINE MIR -81 181 41 512 261 23 45 chr12 45263499 45263675 -99018814 + L2 LINE L2 3142 3313 0 519 319 157 30 chr12 45265323 45265934 -99016555 + L2 LINE L2 1945 2633 -681 1965 164 3 0 chr12 45266064 45266375 -99016114 - AluJb SINE Alu 0 312 1 230 200 200 0 chr12 45266375 45266435 -99016054 + L2 LINE L2 2687 2758 -556 235 227 30 45 chr12 45267005 45267071 -99015418 - MER91A DNA MER1_type -9 187 123 1986 218 82 18 chr12 45267967 45268480 -99014009 + LTR38 LTR ERV1 1 546 -10 613 192 0 23 chr12 45268644 45268774 -99013715 + L1MC1 LINE L1 5286 5412 -2630 3726 158 41 22 chr12 45268779 45269514 -99012975 + L1MC1 LINE L1 5585 6333 0 269 284 199 5 chr12 45271859 45272060 -99010429 + L2 LINE L2 1863 2102 -1212 1826 170 109 3 chr12 45273582 45273940 -99008549 - MSTD LTR MaLR 0 396 1 316 264 118 42 chr12 45274555 45274699 -99007790 + MLT1J2 LTR MaLR 270 424 -26 231 88 0 0 chr12 45274870 45274904 -99007585 + (GA)n Simple_repeat Simple_repeat 1 34 0 5576 158 41 23 chr12 45275003 45275776 -99006713 + L1MC1 LINE L1 5096 5854 -479 2564 110 3 6 chr12 45275776 45276141 -99006348 + THE1B LTR MaLR 1 364 0 9868 113 47 31 chr12 45276141 45277696 -99004793 + THE1B-int LTR MaLR 1 1580 0 2276 147 11 3 chr12 45277696 45278057 -99004432 + THE1B LTR MaLR 1 364 0 5576 158 41 23 chr12 45278057 45278477 -99004012 + L1MC1 LINE L1 5853 6314 -19 29 0 0 0 chr12 45278762 45278791 -99003698 + AT_rich Low_complexity Low_complexity 1 29 0 223 388 7 27 chr12 45279048 45279195 -99003294 + L2 LINE L2 2600 2743 -571 4248 193 30 33 chr12 45279211 45280382 -99002107 - L1MB3 LINE L1 -7 6176 5028 * 5600 225 51 12 chr12 45280375 45281982 -99000507 - L1MB3 LINE L1 -1594 4552 2883 186 347 69 14 chr12 45282367 45282439 -99000050 + L2 LINE L2 3121 3196 -76 246 241 17 0 chr12 45282609 45282667 -98999822 + Tigger1 DNA MER2_type 1 59 -2359 228 143 0 0 chr12 45282669 45282711 -98999778 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 1682 139 27 57 chr12 45282713 45283014 -98999475 - AluJb SINE Alu -20 292 1 14738 135 24 2 chr12 45283078 45285389 -98997100 + Tigger1 DNA MER2_type 57 2418 0 294 210 100 10 chr12 45285432 45285532 -98996957 - L2 LINE L2 -216 3056 2948 407 291 64 1 chr12 45286684 45286844 -98995645 + MLT1J2 LTR MaLR 3 173 -274 29 28 0 0 chr12 45287315 45287351 -98995138 + AT_rich Low_complexity Low_complexity 1 36 0 297 253 0 55 chr12 45288333 45288424 -98994065 - MIR SINE MIR -60 202 117 488 392 48 39 chr12 45288537 45288953 -98993536 + L2 LINE L2 2804 3223 -49 186 103 0 0 chr12 45288980 45289009 -98993480 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 357 309 114 8 chr12 45291500 45291623 -98990866 + L2 LINE L2 3117 3252 -20 27 49 0 0 chr12 45292545 45292586 -98989903 + AT_rich Low_complexity Low_complexity 1 41 0 230 328 15 15 chr12 45293237 45293371 -98989118 + Charlie7 DNA MER1_type 1 134 -2478 2478 252 65 24 chr12 45293391 45294246 -98988243 - L1ME3A LINE L1 -14 6156 5269 1200 149 29 36 chr12 45294254 45294615 -98987874 + MSTB1 LTR MaLR 3 431 -1 283 175 0 16 chr12 45294627 45294690 -98987799 - L1ME3A LINE L1 -903 5243 5182 1141 297 99 11 chr12 45294697 45295243 -98987246 + Charlie7 DNA MER1_type 131 724 -1888 285 123 18 0 chr12 45295236 45295293 -98987196 + Charlie7 DNA MER1_type 2421 2478 -134 * 302 245 0 11 chr12 45298279 45298373 -98984116 + CT-rich Low_complexity Low_complexity 2 94 0 215 340 50 30 chr12 45298631 45298731 -98983758 + L2 LINE L2 3208 3309 -4 251 224 0 59 chr12 45298915 45299000 -98983489 + A-rich Low_complexity Low_complexity 1 80 0 2138 101 7 24 chr12 45300962 45301260 -98981229 - AluSx SINE Alu -19 293 1 618 364 60 33 chr12 45301306 45301885 -98980604 + L2 LINE L2 2164 2758 -556 425 91 57 0 chr12 45302444 45302532 -98979957 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 216 0 0 0 chr12 45303189 45303213 -98979276 + (A)n Simple_repeat Simple_repeat 1 24 0 629 332 40 16 chr12 45304767 45305014 -98977475 - L3b LINE CR1 -218 1365 1113 587 174 0 0 chr12 45305526 45305624 -98976865 + FRAM SINE Alu 53 150 -26 432 55 0 0 chr12 45305624 45305679 -98976810 + (AATAG)n Simple_repeat Simple_repeat 1 55 0 386 345 28 0 chr12 45305680 45305825 -98976664 + MIR SINE MIR 54 202 -60 287 335 46 30 chr12 45306092 45306328 -98976161 - L2 LINE L2 -264 3008 2767 218 316 51 0 chr12 45307227 45307306 -98975183 + MIR SINE MIR 73 155 -107 296 311 48 10 chr12 45307564 45307667 -98974822 + MIR SINE MIR 26 132 -130 1645 198 10 3 chr12 45307681 45307974 -98974515 - MLT2B1 LTR ERVL 0 520 226 11412 188 55 22 chr12 45307974 45308114 -98974375 - ERVL-B1 LTR ERVL -3360 2404 2270 2165 125 0 0 chr12 45308114 45308411 -98974078 - AluSx SINE Alu -15 297 1 11412 188 55 22 chr12 45308411 45310595 -98971894 - ERVL-B1 LTR ERVL -3494 2270 2 2685 177 62 18 chr12 45310596 45311094 -98971395 - MLT2B1 LTR ERVL 0 520 1 232 303 53 0 chr12 45311095 45311171 -98971318 + MIR SINE MIR 149 228 -34 2226 106 7 0 chr12 45311232 45311535 -98970954 - AluSx SINE Alu -7 305 1 193 326 11 54 chr12 45311969 45312061 -98970428 + L3b LINE CR1 1419 1506 -77 472 306 201 10 chr12 45312939 45313148 -98969341 - MIR SINE MIR -8 254 6 371 274 121 91 chr12 45313533 45313963 -98968526 - MLT1J LTR MaLR -50 461 19 692 338 118 41 chr12 45313972 45314714 -98967775 - L2 LINE L2 -674 2640 1822 2135 130 3 0 chr12 45314714 45315013 -98967476 + AluSx SINE Alu 1 300 -12 692 338 118 41 chr12 45315013 45315128 -98967361 - L2 LINE L2 -1492 1822 1717 429 345 44 24 chr12 45315148 45315400 -98967089 - L2 LINE L2 -1751 1563 1307 226 309 116 24 chr12 45315520 45315892 -98966597 - L1M4 LINE L1 -1702 4444 4039 346 336 85 51 chr12 45315909 45316204 -98966285 - L2 LINE L2 -10 3303 2999 479 335 74 65 chr12 45316420 45316973 -98965516 - L1M4 LINE L1 -2167 3979 3422 342 323 118 26 chr12 45316982 45317177 -98965312 + L2 LINE L2 2577 2789 -525 333 324 106 40 chr12 45317269 45317544 -98964945 + L2 LINE L2 2915 3207 -65 188 326 12 35 chr12 45320791 45320877 -98961612 - L2 LINE L2 -4 3268 3185 2024 174 60 24 chr12 45321259 45321672 -98960817 + MSTC LTR MaLR 1 428 0 283 301 118 13 chr12 45322001 45322154 -98960335 - MIR SINE MIR -2 260 92 24 0 0 0 chr12 45322991 45323015 -98959474 + AT_rich Low_complexity Low_complexity 1 24 0 418 333 51 6 chr12 45324785 45324962 -98957527 - MIR SINE MIR -76 186 2 231 354 0 0 chr12 45325086 45325182 -98957307 - L1ME LINE L1 -573 5597 5502 626 284 57 83 chr12 45325182 45325640 -98956849 + MLT1J LTR MaLR 1 446 -65 391 286 29 0 chr12 45325686 45325826 -98956663 - L1MEd LINE L1 -5973 146 3 1675 289 40 2 chr12 45326028 45326474 -98956015 + L1M4b LINE L1 2 464 -6395 4170 227 59 40 chr12 45326486 45327767 -98954722 + L1M4b LINE L1 524 1826 -5029 1131 247 62 11 chr12 45327778 45328151 -98954338 + L1M4b LINE L1 1958 2349 -4610 238 236 78 140 chr12 45328435 45328684 -98953805 + L1M4b LINE L1 2473 2691 -4447 1589 154 82 18 chr12 45328684 45328963 -98953526 + AluJb SINE Alu 1 297 -15 238 236 78 140 chr12 45328963 45329099 -98953390 + L1M4b LINE L1 2691 2834 -4304 25 0 0 0 chr12 45329110 45329135 -98953354 + AT_rich Low_complexity Low_complexity 1 25 0 4128 245 51 38 chr12 45329144 45329692 -98952797 + L1MEc LINE L1 1823 2362 -3853 1958 158 3 10 chr12 45329692 45330003 -98952486 + AluSx SINE Alu 1 309 -3 4128 245 51 38 chr12 45330003 45331324 -98951165 + L1MEc LINE L1 2362 3684 -2531 1586 221 20 33 chr12 45331358 45331753 -98950736 + MLT1A1 LTR MaLR 28 361 -4 1398 176 43 81 chr12 45331827 45331879 -98950610 + L1MB8 LINE L1 5262 5314 -870 2286 94 10 7 chr12 45331879 45332186 -98950303 + AluY SINE Alu 1 308 -3 1398 176 43 81 chr12 45332186 45332530 -98949959 + L1MB8 LINE L1 5314 5643 -541 1032 201 149 62 chr12 45332534 45332598 -98949891 - MER31B LTR ERV1 -7 459 402 2425 114 37 0 chr12 45332598 45332949 -98949540 + THE1B LTR MaLR 1 364 0 1032 201 149 62 chr12 45332949 45333306 -98949183 - MER31B LTR ERV1 -64 402 1 1952 187 86 20 chr12 45333306 45333804 -98948685 + L1MB8 LINE L1 5642 6172 -6 297 311 54 66 chr12 45334068 45334235 -98948254 - MIR3 SINE MIR -31 177 13 1625 216 22 11 chr12 45334389 45334750 -98947739 + MLT1A1 LTR MaLR 1 365 0 452 271 30 25 chr12 45335190 45335389 -98947100 - L1ME3A LINE L1 -1 6169 5970 276 258 153 61 chr12 45335576 45335739 -98946750 - MER5B DNA MER1_type 0 178 1 893 270 135 11 chr12 45337067 45337423 -98945066 + MLT1L LTR MaLR 212 611 -4 28 0 0 0 chr12 45337612 45337640 -98944849 + AT_rich Low_complexity Low_complexity 1 28 0 203 167 0 0 chr12 45337708 45337744 -98944745 + (TATATG)n Simple_repeat Simple_repeat 3 38 0 260 253 77 22 chr12 45338162 45338253 -98944236 + MER91C DNA MER1_type 26 121 -19 225 301 36 0 chr12 45338351 45338434 -98944055 + L2 LINE L2 3187 3272 0 1284 254 130 32 chr12 45338546 45339014 -98943475 - MLT1H1 LTR MaLR -31 524 11 180 77 0 0 chr12 45340760 45340786 -98941703 + (TG)n Simple_repeat Simple_repeat 2 27 0 25 0 0 0 chr12 45341360 45341385 -98941104 + AT_rich Low_complexity Low_complexity 1 25 0 237 169 0 0 chr12 45341660 45341719 -98940770 + GA-rich Low_complexity Low_complexity 2 60 0 361 317 28 21 chr12 45342322 45342464 -98940025 - MIR SINE MIR -11 251 109 21 0 0 0 chr12 45342572 45342593 -98939896 + AT_rich Low_complexity Low_complexity 1 21 0 1714 139 0 77 chr12 45344078 45344266 -98938223 - AluJo SINE Alu -13 299 145 2287 109 3 6 chr12 45344266 45344577 -98937912 - AluSq SINE Alu -3 310 1 1714 139 0 77 chr12 45344577 45344711 -98937778 - AluJo SINE Alu -167 145 2 540 99 40 10 chr12 45345951 45346052 -98936437 + GA-rich Low_complexity Low_complexity 3 106 0 225 196 0 0 chr12 45346086 45346132 -98936357 + T-rich Low_complexity Low_complexity 1 46 0 487 271 153 30 chr12 45346541 45346744 -98935745 + MIR SINE MIR 29 256 -6 271 307 163 26 chr12 45347045 45347198 -98935291 - MIR3 SINE MIR -25 183 10 838 238 0 57 chr12 45347592 45347819 -98934670 + L2 LINE L2 2452 2665 -649 189 0 0 0 chr12 45348601 45348622 -98933867 + (TCTA)n Simple_repeat Simple_repeat 2 22 0 * 207 0 0 0 chr12 45348621 45348644 -98933845 + (TG)n Simple_repeat Simple_repeat 2 24 0 229 338 62 89 chr12 45348878 45349248 -98933241 - L2 LINE L2 -19 3253 2894 1674 244 69 67 chr12 45349393 45349458 -98933031 - MLT1G LTR MaLR -8 582 519 2367 147 44 5 chr12 45349458 45349867 -98932622 - MSTA LTR MaLR 0 428 4 1674 244 69 67 chr12 45349867 45350382 -98932107 - MLT1G LTR MaLR -71 519 1 1069 206 116 4 chr12 45350880 45351156 -98931333 - MER5C DNA MER1_type -17 307 1 515 281 41 12 chr12 45351985 45352156 -98930333 - MER5B DNA MER1_type -2 176 1 2151 119 125 13 chr12 45352368 45352753 -98929736 + MSTA LTR MaLR 1 428 0 2126 137 0 0 chr12 45353266 45353566 -98928923 + AluSg SINE Alu 1 300 -10 376 122 54 0 chr12 45354210 45354284 -98928205 - L1MA7 LINE L1 -4 6287 6210 1600 136 11 17 chr12 45354287 45354574 -98927915 + L1MA7 LINE L1 5912 6196 -95 22 80 0 0 chr12 45354614 45354664 -98927825 + AT_rich Low_complexity Low_complexity 1 50 0 1227 223 4 16 chr12 45354830 45355072 -98927417 - MER8 DNA MER2_type 0 239 1 22 56 0 0 chr12 45355512 45355548 -98926941 + AT_rich Low_complexity Low_complexity 1 36 0 2225 115 0 0 chr12 45355589 45355884 -98926605 - AluSx SINE Alu -17 295 1 330 339 116 42 chr12 45356400 45356710 -98925779 + L1MEd LINE L1 52 384 -5735 363 271 77 6 chr12 45357906 45358076 -98924413 + MER113 DNA MER1_type? 3 184 -337 443 209 85 62 chr12 45358328 45358457 -98924032 + MIR SINE MIR 16 147 -61 808 290 8 0 chr12 45359207 45359466 -98923023 - MIR SINE MIR 0 262 2 264 77 0 0 chr12 45359954 45359993 -98922496 + (TG)n Simple_repeat Simple_repeat 2 40 0 1824 146 48 7 chr12 45361652 45361946 -98920543 - AluSx SINE Alu -6 306 1 1622 251 118 9 chr12 45362875 45363522 -98918967 - L1ME3A LINE L1 -7 6224 5494 628 219 0 59 chr12 45363541 45363710 -98918779 - L1ME1 LINE L1 -44 6122 5964 1411 263 68 50 chr12 45363751 45364485 -98918004 - L1ME3A LINE L1 -4922 1474 723 2444 74 0 3 chr12 45364485 45364794 -98917695 - AluY SINE Alu -3 308 1 1411 263 68 50 chr12 45364794 45364874 -98917615 - L1ME3A LINE L1 -5673 723 646 204 68 45 23 chr12 45364972 45365016 -98917473 + (TA)n Simple_repeat Simple_repeat 1 45 0 351 0 0 0 chr12 45365028 45365067 -98917422 + (CA)n Simple_repeat Simple_repeat 2 40 0 2063 200 23 8 chr12 45365613 45366003 -98916486 + MSTD LTR MaLR 1 396 0 25 0 0 0 chr12 45366115 45366140 -98916349 + AT_rich Low_complexity Low_complexity 1 25 0 200 311 39 48 chr12 45366236 45366339 -98916150 - L2 LINE L2 -48 3265 3164 1022 243 55 101 chr12 45367193 45367757 -98914732 + MER34 LTR ERV1 2 539 -3 325 333 41 48 chr12 45367809 45367956 -98914533 + MIR3 SINE MIR 17 162 -46 2389 143 67 0 chr12 45369489 45369894 -98912595 + MSTB1 LTR MaLR 1 432 0 508 167 0 0 chr12 45370011 45370085 -98912404 + Tigger5 DNA MER2_type 1 74 -2249 380 244 0 0 chr12 45370085 45370167 -98912322 - Tigger5 DNA MER2_type 0 2323 2242 * 404 169 13 13 chr12 45370162 45370239 -98912250 + Tigger5 DNA MER2_type 2247 2323 0 23 78 0 0 chr12 45370446 45370497 -98911992 + AT_rich Low_complexity Low_complexity 1 51 0 2415 81 3 0 chr12 45370716 45371014 -98911475 + AluY SINE Alu 6 304 -7 604 217 25 25 chr12 45372616 45372773 -98909716 - MIR SINE MIR -1 261 105 1250 238 32 32 chr12 45372928 45372948 -98909541 - MLT1A2 LTR MaLR -2 372 353 2635 106 0 8 chr12 45372948 45373326 -98909163 - THE1C LTR MaLR 0 375 1 10405 111 20 25 chr12 45373326 45374914 -98907575 - THE1C-int LTR MaLR 0 1580 1 2795 84 0 11 chr12 45374914 45375293 -98907196 - THE1C LTR MaLR 0 375 1 1250 238 32 32 chr12 45375293 45375577 -98906912 - MLT1A2 LTR MaLR -18 356 66 436 125 10 226 chr12 45375577 45375785 -98906704 - MER51C LTR ERV1 -2 632 470 469 163 25 0 chr12 45376063 45376143 -98906346 - MLT1A2 LTR MaLR -292 82 1 237 337 36 0 chr12 45376354 45376437 -98906052 + MIR SINE MIR 13 98 -164 300 311 163 36 chr12 45376437 45376633 -98905856 + MIR SINE MIR 29 249 -13 244 211 26 114 chr12 45377898 45378012 -98904477 - MLT1H LTR MaLR -2 547 444 628 309 98 30 chr12 45378442 45378548 -98903941 - L1M4 LINE L1 -1891 4255 4158 4910 35 19 0 chr12 45378548 45379140 -98903349 - L1PA5 LINE L1 0 6154 5552 628 309 98 30 chr12 45379140 45379800 -98902689 - L1M4 LINE L1 -1988 4158 3437 403 281 101 62 chr12 45379960 45380457 -98902032 - L1M4 LINE L1 -2777 3369 2814 2555 283 92 14 chr12 45380458 45380792 -98901697 - L2 LINE L2 -2285 1029 723 2232 110 75 20 chr12 45380792 45381137 -98901352 + THE1B LTR MaLR 1 364 0 2555 283 92 14 chr12 45381137 45381613 -98900876 - L2 LINE L2 -2591 723 134 1959 107 34 17 chr12 45381613 45381904 -98900585 - AluSq SINE Alu -17 296 1 2555 283 92 14 chr12 45381904 45382025 -98900464 - L2 LINE L2 -3180 134 24 480 332 106 35 chr12 45382383 45382759 -98899730 + L2 LINE L2 2911 3313 0 7334 164 7 2 chr12 45383990 45386298 -98896191 - L1PB1 LINE L1 -3 6148 3829 200 214 18 0 chr12 45386422 45386478 -98896011 + (TA)n Simple_repeat Simple_repeat 1 57 0 288 219 109 51 chr12 45386720 45386857 -98895632 + L1P5 LINE L1 5321 5465 -686 347 255 64 66 chr12 45387249 45387520 -98894969 + L1M4 LINE L1 4885 5155 -991 1587 196 3 17 chr12 45387520 45387816 -98894673 + AluJb SINE Alu 1 292 -20 347 255 64 66 chr12 45387816 45387895 -98894594 + L1M4 LINE L1 5155 5233 -913 258 271 47 24 chr12 45387941 45388026 -98894463 + L1MEd LINE L1 1 87 -6032 513 246 67 116 chr12 45388559 45388888 -98893601 + L1MEd LINE L1 785 1097 -5022 240 298 50 18 chr12 45388899 45389117 -98893372 + L1MEd LINE L1 1163 1387 -4923 365 297 109 24 chr12 45389130 45389295 -98893194 + HAL1 LINE L1 1475 1653 -854 2381 87 0 0 chr12 45389451 45389760 -98892729 - AluY SINE Alu -2 309 1 24 0 0 0 chr12 45389795 45389819 -98892670 + AT_rich Low_complexity Low_complexity 1 24 0 207 339 0 40 chr12 45389991 45390115 -98892374 + A-rich Low_complexity Low_complexity 1 119 0 * 326 261 11 11 chr12 45390041 45390133 -98892356 + GA-rich Low_complexity Low_complexity 5 96 0 4801 173 36 4 chr12 45390342 45391403 -98891086 - L1MB2 LINE L1 -2 6169 5077 324 267 18 0 chr12 45391448 45391613 -98890876 + L1MEd LINE L1 3055 3222 -2907 591 243 126 5 chr12 45391821 45392035 -98890454 + MIR SINE MIR 13 252 -10 264 344 53 0 chr12 45392460 45392591 -98889898 + L2 LINE L2 3175 3312 -1 269 293 8 113 chr12 45392728 45392760 -98889729 + MIR SINE MIR 24 58 -150 2201 57 3 108 chr12 45392760 45393095 -98889394 + AluY SINE Alu 12 311 0 269 293 8 113 chr12 45393095 45393195 -98889294 + MIR SINE MIR 58 142 -66 383 294 10 0 chr12 45393328 45393430 -98889059 - MIR SINE MIR -71 191 89 397 231 94 0 chr12 45393917 45394034 -98888455 + L1MCc LINE L1 11 138 -6285 268 251 43 101 chr12 45394116 45394323 -98888166 + L1MCc LINE L1 266 460 -5963 1893 155 0 22 chr12 45394768 45395085 -98887404 + AluJb SINE Alu 1 310 -2 2354 256 74 70 chr12 45395184 45396331 -98886158 + L1MCc LINE L1 1130 2270 -4671 216 0 0 0 chr12 45396331 45396355 -98886134 + (TG)n Simple_repeat Simple_repeat 1 24 0 2354 256 74 70 chr12 45396355 45397430 -98885059 + L1MCc LINE L1 2270 3560 -3381 1731 121 0 82 chr12 45397448 45397859 -98884630 + L1MA4A LINE L1 5601 5955 -201 875 237 92 19 chr12 45397892 45398217 -98884272 + L1ME2 LINE L1 5806 6154 -10 252 254 0 0 chr12 45398421 45398492 -98883997 + (TA)n Simple_repeat Simple_repeat 2 72 0 33 73 0 0 chr12 45398518 45398586 -98883903 + AT_rich Low_complexity Low_complexity 1 68 0 189 250 23 0 chr12 45399310 45399354 -98883135 + L2 LINE L2 3183 3227 -86 181 380 20 10 chr12 45399493 45399593 -98882896 - L3 LINE CR1 -1017 560 460 351 286 71 127 chr12 45399638 45400016 -98882473 + L2 LINE L2 2866 3222 -50 21 0 0 0 chr12 45401420 45401441 -98881048 + AT_rich Low_complexity Low_complexity 1 21 0 220 250 0 0 chr12 45401908 45401948 -98880541 - L3b LINE CR1 -253 1330 1291 22 35 0 0 chr12 45403785 45403814 -98878675 + AT_rich Low_complexity Low_complexity 1 29 0 278 297 50 20 chr12 45406508 45406609 -98875880 - MER5A DNA MER1_type -77 112 9 227 154 0 19 chr12 45409302 45409354 -98873135 + CT-rich Low_complexity Low_complexity 3 53 0 586 265 8 0 chr12 45410275 45410407 -98872082 + MIR SINE MIR 19 151 -111 326 276 18 65 chr12 45411709 45411879 -98870610 - MER103 DNA DNA -3 163 2 407 297 39 45 chr12 45412222 45412606 -98869883 - L1MEd LINE L1 -993 1497 1024 26 30 0 0 chr12 45413366 45413399 -98869090 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr12 45414360 45414381 -98868108 + AT_rich Low_complexity Low_complexity 1 21 0 2952 129 32 6 chr12 45415345 45415841 -98866648 - L1MA4 LINE L1 -11 6289 5781 5495 142 163 26 chr12 45415841 45416975 -98865514 + pTR5 LTR ERV1 743 2032 -406 321 198 33 22 chr12 45416975 45417066 -98865423 + LTR30 LTR ERV1 551 642 -80 1556 87 50 0 chr12 45417072 45417291 -98865198 + LTR12 LTR ERV1 485 714 0 680 126 27 0 chr12 45417291 45417402 -98865087 - L1MA4 LINE L1 -516 5784 5671 1222 152 68 29 chr12 45417652 45417962 -98864527 + MER33 DNA MER1_type 3 324 0 246 32 0 0 chr12 45418105 45418136 -98864353 + (TG)n Simple_repeat Simple_repeat 2 32 0 417 334 107 53 chr12 45418143 45418972 -98863517 + L2 LINE L2 1189 2062 -1252 422 306 140 6 chr12 45419102 45419259 -98863230 + MER5B DNA MER1_type 1 178 0 42478 36 24 2 chr12 45419428 45425452 -98857037 + L1PA3 LINE L1 1 6155 0 223 250 0 0 chr12 45425602 45425658 -98856831 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 233 345 163 5 chr12 45426450 45426653 -98855836 - L2 LINE L2 -1034 2280 2046 298 354 8 8 chr12 45426662 45426789 -98855700 + L2 LINE L2 2989 3115 -198 189 214 0 0 chr12 45426793 45426835 -98855654 + GA-rich Low_complexity Low_complexity 4 45 0 253 333 9 9 chr12 45426846 45426957 -98855532 - Charlie8 DNA MER1_type -2192 225 115 277 299 0 0 chr12 45426957 45427044 -98855445 + HsTC2 DNA Tc2 1 87 -1811 214 222 0 37 chr12 45427428 45427482 -98855007 + GA-rich Low_complexity Low_complexity 3 54 0 489 322 48 18 chr12 45428658 45428885 -98853604 + MIR SINE MIR 3 236 -26 477 330 87 50 chr12 45429381 45429738 -98852751 - L2 LINE L2 -10 3262 2893 2442 183 78 11 chr12 45429762 45430286 -98852203 - MER89 LTR ERV1 0 559 1 2256 135 25 0 chr12 45431589 45431944 -98850545 - THE1B LTR MaLR 0 364 1 356 314 74 37 chr12 45432128 45432399 -98850090 + L2 LINE L2 1471 1751 -1563 291 240 104 52 chr12 45432432 45432528 -98849961 - L2 LINE L2 -1 3312 3212 180 77 0 0 chr12 45432805 45432831 -98849658 + (T)n Simple_repeat Simple_repeat 1 26 0 25 31 0 0 chr12 45433073 45433105 -98849384 + AT_rich Low_complexity Low_complexity 1 32 0 288 150 50 0 chr12 45433291 45433351 -98849138 - L1ME3A LINE L1 -219 5951 5889 257 288 25 56 chr12 45433381 45433541 -98848948 - L1 LINE L1 -1089 5057 4903 233 261 97 52 chr12 45433648 45433782 -98848707 + L1MEd LINE L1 20 159 -5960 261 229 79 57 chr12 45433970 45434110 -98848379 + L1MEd LINE L1 671 813 -5306 2214 74 23 27 chr12 45434647 45434946 -98847543 + AluSp SINE Alu 1 298 -15 1507 63 0 48 chr12 45436171 45436377 -98846112 - AluY SINE Alu -12 299 104 471 319 43 22 chr12 45437796 45437981 -98844508 + MIR SINE MIR 1 189 -73 22 0 0 0 chr12 45438089 45438111 -98844378 + AT_rich Low_complexity Low_complexity 1 22 0 377 309 94 20 chr12 45438162 45438338 -98844151 + MIR SINE MIR 2 189 -73 342 0 0 0 chr12 45439031 45439069 -98843420 + (TG)n Simple_repeat Simple_repeat 2 39 0 267 304 24 102 chr12 45440144 45440476 -98842013 - LTR67 LTR ERVL -34 523 218 24 0 0 0 chr12 45440614 45440638 -98841851 + AT_rich Low_complexity Low_complexity 1 24 0 2750 78 13 0 chr12 45440873 45440894 -98841595 + L1PB1 LINE L1 5764 5783 -404 465 19 0 0 chr12 45440894 45440948 -98841541 + (TA)n Simple_repeat Simple_repeat 1 54 0 2750 78 13 0 chr12 45440948 45441345 -98841144 + L1PB1 LINE L1 5783 6187 0 248 249 12 24 chr12 45441409 45441576 -98840913 + (CATATA)n Simple_repeat Simple_repeat 1 165 0 1679 346 78 17 chr12 45441775 45442696 -98839793 - ERVL LTR ERVL -637 5127 4151 29 28 0 0 chr12 45443268 45443304 -98839185 + AT_rich Low_complexity Low_complexity 1 36 0 195 162 0 0 chr12 45443681 45443718 -98838771 + T-rich Low_complexity Low_complexity 1 37 0 316 194 15 0 chr12 45444158 45444225 -98838264 + MER58 DNA MER1_type 2327 2394 -26 2197 75 0 25 chr12 45444672 45444984 -98837505 - AluY SINE Alu 0 313 9 494 300 49 29 chr12 45444994 45445237 -98837252 - ERVL LTR ERVL -3386 2378 2131 332 204 107 48 chr12 45445493 45445596 -98836893 + MLT1D LTR MaLR 1 109 -396 1304 252 48 44 chr12 45445632 45446045 -98836444 + MLT1D LTR MaLR 91 505 0 1404 207 38 54 chr12 45448515 45448969 -98833520 + MER39 LTR ERV1 260 565 0 36 40 0 0 chr12 45450084 45450134 -98832355 + AT_rich Low_complexity Low_complexity 1 50 0 293 319 58 58 chr12 45450182 45450408 -98832081 - MIR SINE MIR -3 259 34 248 330 19 38 chr12 45451042 45451148 -98831341 + L2 LINE L2 2714 2817 -497 2868 16 0 3 chr12 45452326 45452645 -98829844 + AluYb8 SINE Alu 1 318 0 552 243 160 10 chr12 45454283 45454571 -98827918 + L1MC5 LINE L1 7560 7890 -71 2025 141 0 3 chr12 45454842 45455155 -98827334 - AluSx SINE Alu 0 312 1 688 144 8 8 chr12 45455551 45455676 -98826813 + L1MA3 LINE L1 6175 6299 -6 4331 235 90 19 chr12 45456142 45458426 -98824063 + L1ME1 LINE L1 3609 6066 -100 1891 146 35 35 chr12 45458426 45458795 -98823694 - THE1C LTR MaLR -4 371 3 4331 235 90 19 chr12 45458795 45458899 -98823590 + L1ME1 LINE L1 6066 6161 -5 24 67 0 0 chr12 45459066 45459111 -98823378 + AT_rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr12 45460352 45460376 -98822113 + AT_rich Low_complexity Low_complexity 1 24 0 2057 89 4 4 chr12 45460898 45461167 -98821322 + AluSx SINE Alu 39 307 -5 1111 169 45 0 chr12 45461385 45461586 -98820903 - MER2 DNA MER2_type -135 210 1 1668 163 51 4 chr12 45462329 45462605 -98819884 + AluJo SINE Alu 4 292 -20 182 283 0 0 chr12 45463924 45463970 -98818519 + L2 LINE L2 1963 2008 -1306 2131 121 7 0 chr12 45464482 45464788 -98817701 - AluSx SINE Alu -4 308 1 197 196 18 0 chr12 45464841 45464897 -98817592 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 307 141 0 174 chr12 45464948 45465040 -98817449 - MADE1 DNA Mariner -4 76 1 * 457 242 55 0 chr12 45465040 45465163 -98817326 + MER112 DNA MER1_type 125 254 -6 503 296 24 6 chr12 45465286 45465455 -98817034 + MIR SINE MIR 66 237 -25 402 214 53 30 chr12 45466167 45466298 -98816191 - MER74A LTR ERVL 0 558 425 7932 100 19 36 chr12 45466298 45467862 -98814627 + L1PA8 LINE L1 4097 5621 -510 1833 90 4 4 chr12 45467862 45468118 -98814371 + L1PA8 LINE L1 5909 6164 -8 1955 194 26 53 chr12 45468139 45468608 -98813881 - MER74A LTR ERVL -102 456 1 588 238 27 70 chr12 45468696 45468881 -98813608 - MER5B DNA MER1_type -1 177 1 253 242 16 16 chr12 45468893 45468955 -98813534 - MIR SINE MIR -135 127 66 644 285 81 56 chr12 45469281 45469691 -98812798 + MLT1K LTR MaLR 169 588 0 256 298 66 41 chr12 45469939 45470060 -98812429 - L2 LINE L2 -10 3262 3139 2392 69 3 0 chr12 45470536 45470826 -98811663 + AluSg SINE Alu 1 291 -19 226 326 0 65 chr12 45470853 45470945 -98811544 - L2 LINE L2 -194 3078 2993 427 278 62 0 chr12 45471104 45471248 -98811241 + Charlie1 DNA MER1_type 1 153 -2608 560 149 18 9 chr12 45471252 45471366 -98811123 + Charlie1 DNA MER1_type 2080 2194 -567 1617 132 34 73 chr12 45471390 45471676 -98810813 - MER1B DNA MER1_type -2373 339 113 2062 116 3 0 chr12 45471676 45471960 -98810529 + AluSq SINE Alu 10 294 -19 1617 132 34 73 chr12 45471960 45472069 -98810420 - MER1B DNA MER1_type -2599 113 1 1923 174 141 2 chr12 45472070 45472547 -98809942 + Charlie1 DNA MER1_type 2213 2755 -6 424 270 131 22 chr12 45475382 45475519 -98806970 - MIR SINE MIR -79 183 32 267 293 12 12 chr12 45475880 45475962 -98806527 - L2 LINE L2 0 3313 3232 862 126 0 8 chr12 45477758 45477885 -98804604 + AluJo SINE Alu 1 126 -176 935 186 0 6 chr12 45477940 45478096 -98804393 + AluJo SINE Alu 135 289 -23 200 261 115 31 chr12 45478120 45478250 -98804239 - MIR SINE MIR -50 212 72 2175 105 0 0 chr12 45478371 45478657 -98803832 + AluSc SINE Alu 14 299 -10 255 103 0 0 chr12 45480051 45480090 -98802399 + (TG)n Simple_repeat Simple_repeat 1 39 0 182 387 21 11 chr12 45481604 45481697 -98800792 - MIR SINE MIR -20 242 149 455 387 16 5 chr12 45481731 45481922 -98800567 - L2 LINE L2 0 3272 3080 543 213 101 37 chr12 45482221 45482409 -98800080 + MER3 DNA MER1_type 10 209 0 238 222 37 49 chr12 45482409 45482438 -98800051 - MER3 DNA MER1_type -164 45 18 204 211 0 0 chr12 45482790 45482828 -98799661 + (CA)n Simple_repeat Simple_repeat 1 38 0 595 76 0 0 chr12 45483201 45483280 -98799209 + MADE1 DNA Mariner 2 80 0 506 104 13 0 chr12 45483700 45483777 -98798712 - MADE1 DNA Mariner 0 80 3 239 252 70 78 chr12 45483869 45483984 -98798505 - MIR SINE MIR -112 150 37 455 328 50 42 chr12 45484218 45484578 -98797911 - L2 LINE L2 -4 3309 2947 362 258 39 23 chr12 45484598 45484726 -98797763 - L2 LINE L2 -835 2479 2350 21 57 0 0 chr12 45484875 45484910 -98797579 + AT_rich Low_complexity Low_complexity 1 35 0 214 281 18 35 chr12 45487434 45487491 -98794998 + L2 LINE L2 3149 3204 -68 2096 169 0 6 chr12 45488366 45488430 -98794059 + MER7A DNA MER2_type 2 65 -2973 3893 110 29 2 chr12 45488430 45489021 -98793468 + L1PA13 LINE L1 5551 6157 -6 2096 169 0 6 chr12 45489021 45489304 -98793185 + MER7A DNA MER2_type 65 345 -1 2322 84 0 0 chr12 45489388 45489706 -98792783 - AluSx SINE Alu 0 318 1 660 299 99 0 chr12 45490192 45490413 -98792076 - MIR SINE MIR -19 243 1 328 321 47 51 chr12 45490475 45490690 -98791799 + MIR SINE MIR 43 256 -6 840 275 8 46 chr12 45490794 45491034 -98791455 - MIR SINE MIR -21 241 11 1599 193 6 29 chr12 45491306 45491622 -98790867 + AluJo SINE Alu 1 309 -3 466 177 26 9 chr12 45491624 45491737 -98790752 + GA-rich Low_complexity Low_complexity 4 118 0 2552 96 16 14 chr12 45492809 45493172 -98789317 + THE1B LTR MaLR 1 364 0 252 211 35 0 chr12 45493249 45493306 -98789183 + MIR SINE MIR 11 69 -193 260 219 55 41 chr12 45493336 45493409 -98789080 + MIR SINE MIR 163 236 -26 319 296 49 21 chr12 45493417 45493559 -98788930 + MIR SINE MIR 61 206 -56 714 282 87 10 chr12 45493630 45493954 -98788535 + MER57B LTR ERV1 1 321 -82 1018 238 114 22 chr12 45494377 45494692 -98787797 - MER2 DNA MER2_type -1 344 1 2638 85 3 35 chr12 45495138 45495290 -98787199 - THE1B LTR MaLR 0 364 209 2297 81 0 10 chr12 45495290 45495586 -98786903 + AluY SINE Alu 1 293 -18 2638 85 3 35 chr12 45495586 45495809 -98786680 - THE1B LTR MaLR -155 209 1 837 269 125 31 chr12 45495845 45496433 -98786056 + L2 LINE L2 2660 3313 0 1830 154 0 10 chr12 45496455 45496782 -98785707 + AluJb SINE Alu 23 529 -40 933 110 6 28 chr12 45496782 45496964 -98785525 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 1830 154 0 10 chr12 45496964 45497005 -98785484 + AluJb SINE Alu 529 569 0 197 62 0 31 chr12 45497041 45497073 -98785416 + (GGGGA)n Simple_repeat Simple_repeat 2 32 0 1678 177 100 21 chr12 45499257 45499738 -98782751 + Charlie1b DNA MER1_type 1 519 -4 316 313 60 18 chr12 45499948 45500114 -98782375 + MER5A DNA MER1_type 5 177 -12 754 276 36 18 chr12 45500610 45500835 -98781654 + MIR SINE MIR 34 262 0 231 61 0 0 chr12 45502252 45502285 -98780204 + (TTCC)n Simple_repeat Simple_repeat 3 35 0 338 200 50 0 chr12 45502679 45502759 -98779730 + MER58 DNA MER1_type 131 2419 -1 333 160 93 27 chr12 45502827 45502902 -98779587 - MER5A DNA MER1_type -83 106 27 251 372 34 34 chr12 45503044 45503278 -98779211 + MIR SINE MIR 20 253 -9 3319 314 49 37 chr12 45504179 45505740 -98776749 - HERV16 LTR ERVL -1900 3096 1725 916 305 39 36 chr12 45505888 45506245 -98776244 - HERV16 LTR ERVL -4095 901 544 4196 116 13 2 chr12 45506549 45507177 -98775312 + MER41B LTR ERV1 1 635 0 202 300 71 0 chr12 45508344 45508414 -98774075 + L2 LINE L2 3183 3257 -56 1750 195 0 3 chr12 45508472 45508780 -98773709 - AluJo SINE Alu -5 307 1 2603 122 3 8 chr12 45508833 45509210 -98773279 - THE1C LTR MaLR 0 375 1 10392 123 10 29 chr12 45509210 45510821 -98771668 - THE1C-int LTR MaLR 0 1580 1 2319 114 50 8 chr12 45510821 45511181 -98771308 - THE1C LTR MaLR 0 375 1 244 120 54 54 chr12 45511879 45511971 -98770518 + (TA)n Simple_repeat Simple_repeat 1 92 0 649 274 61 80 chr12 45511981 45512393 -98770096 - LTR67 LTR ERVL -141 416 13 206 283 152 20 chr12 45512644 45512743 -98769746 + L2 LINE L2 3154 3265 -7 357 347 42 21 chr12 45512828 45513021 -98769468 + MER117 DNA MER1_type 1 197 0 458 255 182 26 chr12 45513813 45514005 -98768484 - MIR SINE MIR 0 262 41 240 307 20 81 chr12 45514104 45514268 -98768221 - MIR SINE MIR -67 141 42 291 333 48 0 chr12 45514476 45514581 -98767908 - MIR3 SINE MIR -13 195 86 189 74 0 0 chr12 45515467 45515494 -98766995 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 865 196 0 0 chr12 45515501 45515644 -98766845 - FRAM SINE Alu -37 139 1 266 241 60 0 chr12 45515712 45515795 -98766694 + L1MEc LINE L1 1989 2076 -4320 325 212 35 24 chr12 45515858 45515943 -98766546 + L1MEc LINE L1 2626 2711 -3504 264 341 122 8 chr12 45515950 45516196 -98766293 - L2 LINE L2 -1577 1737 1464 190 365 45 51 chr12 45516395 45516573 -98765916 - L2 LINE L2 -1850 1464 1288 324 265 109 55 chr12 45516698 45516936 -98765553 + L1ME LINE L1 5347 5597 -558 2220 114 0 3 chr12 45517252 45517551 -98764938 + AluSq SINE Alu 3 300 -13 22 56 0 0 chr12 45518375 45518411 -98764078 + AT_rich Low_complexity Low_complexity 1 36 0 23 78 0 0 chr12 45520719 45520770 -98761719 + AT_rich Low_complexity Low_complexity 1 51 0 319 188 159 0 chr12 45522590 45522659 -98759830 + L2 LINE L2 3234 3313 0 2643 24 3 0 chr12 45523535 45523833 -98758656 + AluY SINE Alu 4 302 -9 1567 248 90 46 chr12 45524408 45525142 -98757347 + L1M4 LINE L1 4571 5353 -793 2260 109 0 0 chr12 45525142 45525445 -98757044 + AluSx SINE Alu 1 303 -9 1567 248 90 46 chr12 45525445 45525478 -98757011 + L1M4 LINE L1 5353 5383 -763 299 294 91 23 chr12 45525478 45525828 -98756661 + L1M4 LINE L1 2315 2688 -3458 28 0 0 0 chr12 45526808 45526836 -98755653 + AT_rich Low_complexity Low_complexity 1 28 0 775 190 38 13 chr12 45527512 45527670 -98754819 + L1M4b LINE L1 10 171 -6688 1222 150 14 12 chr12 45527700 45527722 -98754767 + MLT1D LTR MaLR 259 279 -226 662 75 0 0 chr12 45527722 45527816 -98754673 + L1PA4 LINE L1 6062 6155 0 1222 150 14 12 chr12 45527816 45528004 -98754485 + MLT1D LTR MaLR 279 448 -57 5541 241 42 59 chr12 45528018 45530385 -98752104 + L1M4b LINE L1 159 2469 -4490 789 271 99 33 chr12 45530503 45531367 -98751122 + L1M4b LINE L1 2477 3353 -3604 1972 94 41 38 chr12 45531501 45531593 -98750896 - L1P4 LINE L1 -553 5612 5522 2050 131 3 0 chr12 45531593 45531890 -98750599 + AluSx SINE Alu 1 298 -14 1972 94 41 38 chr12 45531890 45532115 -98750374 - L1P4 LINE L1 -643 5522 5294 192 313 16 0 chr12 45532546 45532610 -98749879 - L2 LINE L2 -4 3309 3245 665 275 66 24 chr12 45532658 45532869 -98749620 - MIR SINE MIR -34 228 9 1300 226 53 60 chr12 45533540 45533960 -98748529 + MER31B LTR ERV1 1 419 -47 3914 121 53 2 chr12 45533960 45534581 -98747908 + MER39B LTR ERV1 1 653 0 1300 226 53 60 chr12 45534581 45534629 -98747860 + MER31B LTR ERV1 419 466 0 622 131 0 10 chr12 45534845 45534944 -98747545 + MER4A LTR ERV1 1 98 -566 * 1568 139 163 92 chr12 45534940 45535272 -98747217 + MER4A LTR ERV1 257 621 -43 2199 108 0 22 chr12 45535272 45535588 -98746901 + AluSx SINE Alu 3 311 -1 1568 139 163 92 chr12 45535588 45535636 -98746853 + MER4A LTR ERV1 621 664 0 29 98 0 0 chr12 45536777 45536869 -98745620 + AT_rich Low_complexity Low_complexity 1 92 0 2303 208 43 12 chr12 45537057 45537567 -98744922 + MER90 LTR ERV1 89 614 0 573 161 77 39 chr12 45537717 45537847 -98744642 - AluJb SINE Alu -1 311 177 27 29 0 0 chr12 45538487 45538521 -98743968 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr12 45540867 45540888 -98741601 + AT_rich Low_complexity Low_complexity 1 21 0 460 101 25 38 chr12 45542001 45542080 -98740409 + MADE1 DNA Mariner 1 78 -2 2353 82 3 0 chr12 45542103 45542406 -98740083 + AluSp SINE Alu 1 304 -9 274 315 87 0 chr12 45542875 45542967 -98739522 - MIR SINE MIR -117 145 46 875 184 27 16 chr12 45542987 45543172 -98739317 + MER53 DNA DNA 3 189 0 282 300 169 19 chr12 45543344 45543504 -98738985 - MER5A DNA MER1_type -5 184 1 642 181 60 0 chr12 45544114 45544230 -98738259 - FLAM_A SINE Alu -10 123 1 2503 119 0 14 chr12 45544644 45545013 -98737476 - THE1B LTR MaLR 0 364 1 243 79 0 0 chr12 45545093 45545131 -98737358 + (TC)n Simple_repeat Simple_repeat 2 39 0 213 39 0 0 chr12 45545131 45545157 -98737332 + (CA)n Simple_repeat Simple_repeat 1 26 0 519 232 92 19 chr12 45545423 45545630 -98736859 - L1M4 LINE L1 -1470 4676 4455 * 2019 262 48 57 chr12 45545602 45546486 -98736003 - L1ME LINE L1 -5175 895 20 22 0 0 0 chr12 45547423 45547445 -98735044 + AT_rich Low_complexity Low_complexity 1 22 0 2320 176 29 5 chr12 45547580 45547994 -98734495 + MSTB LTR MaLR 1 424 -2 321 323 21 0 chr12 45548313 45548409 -98734080 - MIR SINE MIR -150 112 15 386 192 14 0 chr12 45548603 45548676 -98733813 - MER116 DNA Mariner -6 74 1 6169 97 11 2 chr12 45550119 45551772 -98730717 - L1PA13 LINE L1 -19 6795 5131 252 0 0 0 chr12 45551773 45551801 -98730688 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 944 70 0 0 chr12 45551801 45551915 -98730574 - AluY SINE Alu -31 280 167 5297 160 49 7 chr12 45551925 45552880 -98729609 - L1PA13 LINE L1 -1668 5129 4135 4430 205 45 1 chr12 45552884 45553684 -98728805 - L1PA13 LINE L1 -5952 835 1 791 202 0 28 chr12 45554668 45554858 -98727631 - L1P LINE L1 -2463 3683 3499 290 370 101 34 chr12 45554970 45555445 -98727044 + L2 LINE L2 2456 2962 -352 282 303 61 10 chr12 45556817 45556916 -98725573 + MIR SINE MIR 3 106 -156 403 265 11 0 chr12 45556954 45557061 -98725428 + L1ME2 LINE L1 6051 6162 -4 201 355 0 0 chr12 45557087 45557163 -98725326 + MIR SINE MIR 129 204 -58 836 181 7 0 chr12 45557334 45557483 -98725006 + FRAM SINE Alu 1 150 -16 2203 107 0 3 chr12 45557498 45557798 -98724691 + AluSx SINE Alu 1 299 -13 1499 176 98 17 chr12 45557840 45558136 -98724353 + MER2 DNA MER2_type 1 320 -25 1537 253 106 2 chr12 45558505 45559079 -98723410 + L1M4 LINE L1 2464 3097 -3049 * 2980 233 65 33 chr12 45559076 45560033 -98722456 + L1M4 LINE L1 3332 4318 -1828 511 306 221 42 chr12 45560087 45560864 -98721625 - L3 LINE CR1 -178 1399 484 31 26 0 0 chr12 45561644 45561682 -98720807 + AT_rich Low_complexity Low_complexity 1 38 0 188 320 97 0 chr12 45562161 45562264 -98720225 - L3 LINE CR1 -18 1559 1447 619 276 39 25 chr12 45562418 45562621 -98719868 - MER63A DNA MER1_type -3 207 2 627 353 142 23 chr12 45562716 45563411 -98719078 + L2 LINE L2 2189 2966 -348 1144 284 60 12 chr12 45563502 45563995 -98718494 - L2 LINE L2 -5 3308 2785 3546 286 93 17 chr12 45564025 45565376 -98717113 - L2 LINE L2 -783 2531 1078 1466 96 55 9 chr12 45565581 45565801 -98716688 + MER30 DNA MER1_type 1 230 0 2760 13 0 0 chr12 45565846 45566154 -98716335 - AluYa5 SINE Alu -3 308 1 341 258 211 0 chr12 45566219 45566363 -98716126 - MIR SINE MIR -29 179 2 22 0 0 0 chr12 45566443 45566465 -98716024 + AT_rich Low_complexity Low_complexity 1 22 0 216 328 60 0 chr12 45566495 45566562 -98715927 - L2 LINE L2 -30 3242 3172 2362 94 0 3 chr12 45567064 45567372 -98715117 + AluSq SINE Alu 1 307 -6 279 319 26 35 chr12 45569249 45569362 -98713127 - L2 LINE L2 -1 3312 3201 21 0 0 0 chr12 45569383 45569404 -98713085 + AT_rich Low_complexity Low_complexity 1 21 0 283 304 146 32 chr12 45569806 45569964 -98712525 - MIR SINE MIR -54 208 33 222 37 0 0 chr12 45569968 45569995 -98712494 + (TG)n Simple_repeat Simple_repeat 2 28 0 4238 224 30 39 chr12 45570243 45571987 -98710502 + L1ME1 LINE L1 1 1362 -5463 * 5485 231 94 7 chr12 45571964 45573623 -98708866 + L1MB7 LINE L1 3947 5750 -894 1122 227 8 0 chr12 45573725 45573976 -98708513 + AluJo SINE Alu 54 306 -6 3859 187 17 22 chr12 45573977 45574783 -98707706 + L1MB7 LINE L1 5820 6621 -61 29 60 0 0 chr12 45574823 45574873 -98707616 + AT_rich Low_complexity Low_complexity 1 50 0 856 247 76 59 chr12 45574932 45575435 -98707054 + L1ME1 LINE L1 1423 6659 -5 6546 63 17 7 chr12 45576632 45577982 -98704507 - L1PA7 LINE L1 -2 6467 5110 2707 109 2 0 chr12 45577982 45578403 -98704086 - L1PA7 LINE L1 -2650 3811 3390 * 12005 110 10 29 chr12 45578394 45580652 -98701837 - L1PA7 LINE L1 -4233 2228 10 269 238 162 48 chr12 45580806 45580911 -98701578 - MIR SINE MIR -72 190 74 1270 185 13 1 chr12 45580912 45581228 -98701261 - MLT1A1 LTR MaLR 0 365 5 3386 213 31 131 chr12 45581232 45582446 -98700043 - MLT1A1-int LTR MaLR 0 1735 643 3181 178 48 31 chr12 45582498 45583145 -98699344 - MLT1A1-int LTR MaLR -1076 659 2 1971 164 3 37 chr12 45583150 45583528 -98698961 - MLT1A1 LTR MaLR 0 365 1 470 318 107 75 chr12 45584815 45585281 -98697208 + L2 LINE L2 1893 2373 -941 25 0 0 0 chr12 45585760 45585785 -98696704 + AT_rich Low_complexity Low_complexity 1 25 0 256 375 61 20 chr12 45585928 45586173 -98696316 - L3 LINE CR1 -9 1568 1314 254 234 0 0 chr12 45586220 45586267 -98696222 + MLT1L LTR MaLR 341 387 -228 262 369 175 0 chr12 45586463 45586669 -98695820 - L3 LINE CR1 -424 1153 912 284 276 112 22 chr12 45586928 45587062 -98695427 + MIR SINE MIR 7 152 -110 198 0 0 0 chr12 45587851 45587873 -98694616 + (T)n Simple_repeat Simple_repeat 1 22 0 257 377 8 16 chr12 45587881 45588003 -98694486 + HERV16 LTR ERVL 1174 1294 -3702 231 306 143 25 chr12 45589614 45589810 -98692679 - L2 LINE L2 -687 2627 2409 744 157 0 0 chr12 45590901 45591016 -98691473 + FLAM_C SINE Alu 1 115 -28 27 49 0 0 chr12 45591187 45591228 -98691261 + AT_rich Low_complexity Low_complexity 1 41 0 228 250 0 0 chr12 45591626 45591678 -98690811 - L2 LINE L2 -4 3309 3258 556 308 96 29 chr12 45592067 45592307 -98690182 + MIR SINE MIR 1 256 -6 30 77 0 0 chr12 45593847 45593912 -98688577 + AT_rich Low_complexity Low_complexity 1 65 0 22 35 0 0 chr12 45594439 45594468 -98688021 + AT_rich Low_complexity Low_complexity 1 29 0 369 0 0 0 chr12 45596351 45596392 -98686097 + (CA)n Simple_repeat Simple_repeat 2 42 0 1317 164 7 87 chr12 45597284 45597582 -98684907 + AluJo SINE Alu 1 274 -38 405 0 0 0 chr12 45597590 45597635 -98684854 + (TAA)n Simple_repeat Simple_repeat 1 45 0 28 29 0 0 chr12 45598528 45598563 -98683926 + AT_rich Low_complexity Low_complexity 1 35 0 34 42 0 0 chr12 45599481 45599529 -98682960 + AT_rich Low_complexity Low_complexity 1 48 0 29 60 0 0 chr12 45599634 45599684 -98682805 + AT_rich Low_complexity Low_complexity 1 50 0 337 272 19 19 chr12 45601062 45601165 -98681324 + MIR SINE MIR 128 230 -32 308 298 79 48 chr12 45601288 45601493 -98680996 + HAL1 LINE L1 985 1205 -1302 2777 16 0 0 chr12 45601493 45601802 -98680687 + AluYa5 SINE Alu 1 309 -2 308 298 79 48 chr12 45601802 45601911 -98680578 + HAL1 LINE L1 1205 1309 -1198 2114 214 45 6 chr12 45602412 45602898 -98679591 + MLT1D LTR MaLR 1 505 0 21 36 0 0 chr12 45602901 45602929 -98679560 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr12 45603188 45603212 -98679277 + AT_rich Low_complexity Low_complexity 1 24 0 1031 79 0 0 chr12 45603688 45603827 -98678662 - L1PA10 LINE L1 -2 6166 6028 22 0 0 0 chr12 45604491 45604513 -98677976 + AT_rich Low_complexity Low_complexity 1 22 0 2170 124 0 0 chr12 45605391 45605689 -98676800 + AluSx SINE Alu 1 298 -14 1147 285 154 51 chr12 45607060 45607238 -98675251 + HAL1 LINE L1 1012 1170 -1337 2546 55 0 0 chr12 45607238 45607548 -98674941 + AluYa5 SINE Alu 1 310 -1 1147 285 154 51 chr12 45607548 45608629 -98673860 + HAL1 LINE L1 1170 2401 -106 295 248 178 0 chr12 45608642 45608743 -98673746 + L3 LINE CR1 1212 1330 -247 2233 98 0 0 chr12 45609269 45609585 -98672904 - AluSq SINE Alu 0 316 1 21 0 0 0 chr12 45609671 45609692 -98672797 + AT_rich Low_complexity Low_complexity 1 21 0 2180 108 7 0 chr12 45610720 45611026 -98671463 - AluY SINE Alu -3 308 1 189 388 30 0 chr12 45611926 45611993 -98670496 + L2 LINE L2 3203 3271 -1 1771 235 106 80 chr12 45612361 45613269 -98669220 + L1ME3A LINE L1 5231 6161 -9 434 283 151 14 chr12 45613439 45613658 -98668831 - MIR SINE MIR 0 262 14 2532 24 10 7 chr12 45614442 45614739 -98667750 - AluY SINE Alu -13 298 1 412 358 122 19 chr12 45614752 45615073 -98667416 + L2 LINE L2 2916 3269 -3 1254 245 156 58 chr12 45615960 45616235 -98666254 + Charlie7 DNA MER1_type 1544 1791 -821 2257 87 0 3 chr12 45616235 45616524 -98665965 - AluSc SINE Alu -19 290 3 1254 245 156 58 chr12 45616524 45617208 -98665281 + Charlie7 DNA MER1_type 1791 2597 -15 264 30 0 0 chr12 45617643 45617676 -98664813 + (CA)n Simple_repeat Simple_repeat 2 34 0 30 0 0 0 chr12 45618339 45618369 -98664120 + AT_rich Low_complexity Low_complexity 1 30 0 249 108 0 0 chr12 45618676 45618713 -98663776 + (TTC)n Simple_repeat Simple_repeat 3 39 0 2344 97 0 3 chr12 45618715 45619026 -98663463 - AluSx SINE Alu -2 310 1 23 0 0 0 chr12 45620124 45620147 -98662342 + AT_rich Low_complexity Low_complexity 1 23 0 1179 226 9 0 chr12 45621049 45621270 -98661219 - MER58A DNA MER1_type 0 224 2 323 301 150 18 chr12 45621639 45621752 -98660737 + L2 LINE L2 3141 3268 -4 21 36 0 0 chr12 45622621 45622649 -98659840 + AT_rich Low_complexity Low_complexity 1 28 0 31 26 0 0 chr12 45622730 45622768 -98659721 + AT_rich Low_complexity Low_complexity 1 38 0 194 91 30 0 chr12 45622911 45622944 -98659545 + A-rich Low_complexity Low_complexity 2 35 0 2537 114 8 13 chr12 45622966 45623359 -98659130 + L1PA11 LINE L1 5784 6174 0 201 295 16 16 chr12 45624500 45624561 -98657928 + L2 LINE L2 3194 3254 -18 1677 137 0 4 chr12 45624856 45625111 -98657378 + AluJb SINE Alu 50 303 -9 31 26 0 0 chr12 45626483 45626521 -98655968 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr12 45626822 45626850 -98655639 + AT_rich Low_complexity Low_complexity 1 28 0 423 295 25 0 chr12 45627251 45627373 -98655116 - MIR SINE MIR -73 189 65 1348 162 90 59 chr12 45629782 45630072 -98652417 - AluJb SINE Alu -13 299 1 480 62 0 0 chr12 45631594 45631658 -98650831 + (CA)n Simple_repeat Simple_repeat 1 64 0 2068 138 33 31 chr12 45632882 45633274 -98649215 + L1MC2 LINE L1 5937 6329 -15 2372 83 3 6 chr12 45633274 45633586 -98648903 + AluY SINE Alu 1 311 0 356 294 65 0 chr12 45633618 45633748 -98648741 + MLT1I LTR MaLR 278 387 -22 211 296 41 20 chr12 45633795 45633893 -98648596 - L2 LINE L2 -534 2780 2681 601 314 34 37 chr12 45633922 45634272 -98648217 + HAL1 LINE L1 39 387 -2120 1133 175 154 0 chr12 45634282 45634570 -98647919 - MER33 DNA MER1_type 0 324 1 1107 279 42 76 chr12 45634574 45635166 -98647323 + HAL1 LINE L1 483 1054 -1453 1549 269 111 25 chr12 45635218 45636020 -98646469 + HAL1 LINE L1 1237 2107 -400 2255 97 3 16 chr12 45638054 45638362 -98644127 - AluSx SINE Alu -8 304 1 2057 60 0 4 chr12 45638737 45639003 -98643486 + AluY SINE Alu 41 305 -6 187 158 18 18 chr12 45639195 45639252 -98643237 + (TA)n Simple_repeat Simple_repeat 1 57 0 235 331 118 8 chr12 45639367 45639494 -98642995 + MIR SINE MIR 49 189 -73 2348 96 0 0 chr12 45640169 45640471 -98642018 - AluSq SINE Alu -11 302 1 918 169 19 0 chr12 45640711 45640871 -98641618 - L1MB5 LINE L1 -8 6166 6004 22 35 0 0 chr12 45641328 45641357 -98641132 + AT_rich Low_complexity Low_complexity 1 29 0 1242 225 56 0 chr12 45643476 45643591 -98638898 + AluJo SINE Alu 1 108 -197 207 0 0 0 chr12 45643591 45643614 -98638875 + (CA)n Simple_repeat Simple_repeat 2 24 0 1242 225 56 0 chr12 45643614 45643788 -98638701 + AluJo SINE Alu 108 305 0 21 0 0 0 chr12 45644345 45644366 -98638123 + AT_rich Low_complexity Low_complexity 1 21 0 10801 182 7 0 chr12 45644661 45647566 -98634923 + L1PA13 LINE L1 3245 6161 -2 401 317 102 12 chr12 45647724 45647891 -98634598 + MER5A DNA MER1_type 7 188 -1 186 43 0 0 chr12 45648091 45648114 -98634375 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 23 0 0 0 chr12 45648623 45648646 -98633843 + AT_rich Low_complexity Low_complexity 1 23 0 731 161 19 12 chr12 45648648 45648809 -98633680 - L1MA8 LINE L1 0 6291 6130 2221 129 29 0 chr12 45648809 45649158 -98633331 + L1MA6 LINE L1 5601 5959 -341 316 349 58 67 chr12 45649428 45649758 -98632731 + L2 LINE L2 2939 3265 -7 25 51 0 0 chr12 45651613 45651652 -98630837 + AT_rich Low_complexity Low_complexity 1 39 0 750 303 66 19 chr12 45652268 45652631 -98629858 + L2 LINE L2 1256 1635 -1679 935 220 54 48 chr12 45652639 45652800 -98629689 + MER5C DNA MER1_type 5 163 -161 3228 148 32 25 chr12 45652800 45653167 -98629322 - L1MB2 LINE L1 -2 6169 5806 1107 232 15 93 chr12 45653167 45653563 -98628926 - MLT1A1 LTR MaLR 0 365 1 3228 148 32 25 chr12 45653563 45653625 -98628864 - L1MB2 LINE L1 -365 5806 5746 1674 111 0 0 chr12 45653625 45653851 -98628638 - AluSg/x SINE Alu -15 295 70 3228 148 32 25 chr12 45653851 45654020 -98628469 - L1MB2 LINE L1 -425 5746 5566 935 220 54 48 chr12 45654020 45654171 -98628318 + MER5C DNA MER1_type 163 319 -5 457 234 141 70 chr12 45654215 45654442 -98628047 + L2 LINE L2 1648 1890 -1424 2700 151 78 21 chr12 45654463 45654979 -98627510 - LTR10A LTR ERV1 -64 545 1 1761 258 88 74 chr12 45654991 45655855 -98626634 + L2 LINE L2 1921 2796 -518 1680 145 8 67 chr12 45655856 45656222 -98626267 - MER4A LTR ERV1 0 664 262 235 153 375 14 chr12 45656222 45656294 -98626195 - MER4A LTR ERV1 -566 98 1 1117 247 49 88 chr12 45656294 45656707 -98625782 + L2 LINE L2 2794 3194 -119 6167 73 0 0 chr12 45656707 45657487 -98625002 + LTR17 LTR ERV1 1 780 0 1117 247 49 88 chr12 45657487 45657602 -98624887 + L2 LINE L2 3194 3312 -1 22 35 0 0 chr12 45658048 45658077 -98624412 + AT_rich Low_complexity Low_complexity 1 29 0 2954 230 43 43 chr12 45658214 45658878 -98623611 + L1ME2 LINE L1 5356 6019 -145 225 0 0 0 chr12 45658878 45658903 -98623586 + (TA)n Simple_repeat Simple_repeat 2 26 0 2145 113 13 0 chr12 45658903 45659204 -98623285 - AluSq SINE Alu -8 305 1 2954 230 43 43 chr12 45659204 45659347 -98623142 + L1ME2 LINE L1 6017 6164 0 21 89 0 0 chr12 45662186 45662242 -98620247 + AT_rich Low_complexity Low_complexity 1 56 0 295 286 66 0 chr12 45662265 45662356 -98620133 + MIR SINE MIR 160 256 -6 180 0 0 0 chr12 45663078 45663098 -98619391 + (CAA)n Simple_repeat Simple_repeat 2 21 0 308 274 110 68 chr12 45663153 45663299 -98619190 + MIR SINE MIR 3 154 -108 21 0 0 0 chr12 45664341 45664362 -98618127 + AT_rich Low_complexity Low_complexity 1 21 0 192 152 0 0 chr12 45664371 45664404 -98618085 + (TA)n Simple_repeat Simple_repeat 1 33 0 31 0 0 0 chr12 45666869 45666900 -98615589 + AT_rich Low_complexity Low_complexity 1 31 0 182 213 238 88 chr12 45668782 45668862 -98613627 + MIR SINE MIR 79 170 -92 42658 32 21 2 chr12 45668886 45674921 -98607568 + L1PA2 LINE L1 2 6155 0 21 0 0 0 chr12 45674961 45674982 -98607507 + AT_rich Low_complexity Low_complexity 1 21 0 260 91 23 0 chr12 45675540 45675584 -98606905 + (TC)n Simple_repeat Simple_repeat 1 45 0 325 286 92 63 chr12 45675895 45676663 -98605826 + L1MEd LINE L1 680 1571 -919 685 305 35 39 chr12 45676722 45677007 -98605482 + MER21B LTR ERV1 508 791 -72 604 296 86 31 chr12 45677218 45677762 -98604727 + L1MEd LINE L1 2573 3146 -2983 316 269 102 32 chr12 45677833 45678019 -98604470 + L1MEd LINE L1 3242 3440 -2689 289 299 7 15 chr12 45678089 45678226 -98604263 + L1MEd LINE L1 3601 3736 -2393 1136 137 40 1 chr12 45678262 45678463 -98604026 - L1MA7 LINE L1 -410 5741 5528 2824 130 40 38 chr12 45678463 45679012 -98603477 + L1MA7 LINE L1 5737 6289 -2 346 253 148 20 chr12 45679030 45679049 -98603440 + L1MEd LINE L1 3834 3849 -2280 905 62 77 8 chr12 45679049 45679179 -98603310 + MER85 DNA T2_type 1 139 0 346 253 148 20 chr12 45679179 45679361 -98603128 + L1MEd LINE L1 3849 4061 -2068 376 319 70 26 chr12 45679364 45679593 -98602896 + L1MEd LINE L1 4090 4328 -1801 3629 277 57 30 chr12 45679657 45681388 -98601101 + L1PBa LINE L1 3 1644 -5219 * 4346 167 39 21 chr12 45681387 45682852 -98599637 + L1PB3 LINE L1 229 1720 -4484 * 8797 159 14 20 chr12 45682839 45685501 -98596988 + L1PB3 LINE L1 3569 6211 0 21 0 0 0 chr12 45685501 45685522 -98596967 + AT_rich Low_complexity Low_complexity 1 21 0 336 302 53 6 chr12 45685613 45685782 -98596707 + L1MEd LINE L1 4600 4776 -1353 508 288 106 24 chr12 45686989 45687654 -98594835 + L1MEd LINE L1 4925 5637 -508 2253 150 3 0 chr12 45688978 45689325 -98593164 + MER7A DNA MER2_type 1 346 0 2684 32 0 0 chr12 45690011 45690320 -98592169 + AluY SINE Alu 1 309 -2 444 262 75 0 chr12 45691278 45691385 -98591104 + MER5B DNA MER1_type 27 141 -37 396 290 186 0 chr12 45691418 45691563 -98590926 + MER5A DNA MER1_type 18 189 0 243 371 95 0 chr12 45692132 45692248 -98590241 - L2 LINE L2 -2 3311 3185 206 274 85 19 chr12 45693277 45693383 -98589106 + MIR SINE MIR 150 262 0 291 397 66 0 chr12 45693545 45693666 -98588823 - L2 LINE L2 -19 3253 3125 845 284 23 5 chr12 45694084 45694302 -98588187 - MIR SINE MIR -10 252 31 257 263 59 85 chr12 45694446 45694564 -98587925 + MIR SINE MIR 18 132 -76 201 74 0 0 chr12 45694745 45694772 -98587717 + (CA)n Simple_repeat Simple_repeat 2 28 0 584 218 18 0 chr12 45696673 45696783 -98585706 + MER81 DNA DNA 2 113 -1 2161 92 0 51 chr12 45697399 45697715 -98584774 - AluSc SINE Alu -9 300 1 2152 129 0 0 chr12 45697931 45698241 -98584248 - AluSx SINE Alu -2 310 1 248 262 0 16 chr12 45698653 45698714 -98583775 - L2 LINE L2 0 3313 3254 2283 104 0 3 chr12 45698965 45699272 -98583217 - AluSq SINE Alu -7 306 1 260 274 0 0 chr12 45699296 45699358 -98583131 + MER94 DNA DNA 48 109 -25 189 0 0 0 chr12 45699374 45699395 -98583094 + (CG)n Simple_repeat Simple_repeat 2 22 0 * 198 0 0 0 chr12 45699394 45699416 -98583073 + (CA)n Simple_repeat Simple_repeat 1 22 0 200 286 18 0 chr12 45701095 45701151 -98581338 + CT-rich Low_complexity Low_complexity 4 60 0 29 78 0 0 chr12 45701296 45701360 -98581129 + AT_rich Low_complexity Low_complexity 1 64 0 32 0 0 0 chr12 45701427 45701459 -98581030 + AT_rich Low_complexity Low_complexity 1 32 0 5137 137 16 7 chr12 45701470 45702313 -98580176 - L1PA15 LINE L1 0 6165 5315 250 287 0 23 chr12 45702623 45702710 -98579779 - L2 LINE L2 -101 3212 3128 714 203 63 0 chr12 45702795 45702938 -98579551 + L1ME LINE L1 5555 5706 -458 * 3052 187 18 22 chr12 45702920 45703890 -98578599 + L1MB2 LINE L1 4771 5826 -345 799 211 20 0 chr12 45703895 45704073 -98578416 + FRAM SINE Alu 1 50 0 1617 157 42 53 chr12 45704073 45704394 -98578095 + L1MB2 LINE L1 5818 6136 -35 2135 91 24 14 chr12 45704394 45704690 -98577799 - AluSg SINE Alu -11 299 1 1617 157 42 53 chr12 45704690 45704725 -98577764 + L1MB2 LINE L1 6136 6170 -1 429 139 14 0 chr12 45704732 45704804 -98577685 + L1ME LINE L1 5691 5763 -399 1754 161 29 3 chr12 45704832 45705173 -98577316 + L1MA9 LINE L1 5958 6307 -5 2703 113 12 5 chr12 45705650 45706066 -98576423 + L1PA14 LINE L1 5740 6158 -3 399 252 148 0 chr12 45706202 45706317 -98576172 - MIR SINE MIR -72 190 59 240 292 46 0 chr12 45706447 45706512 -98575977 - MIR SINE MIR -180 82 15 24 0 0 0 chr12 45706512 45706536 -98575953 + AT_rich Low_complexity Low_complexity 1 24 0 2695 133 32 16 chr12 45706536 45707157 -98575332 - L1PA10 LINE L1 -8 6297 5665 24 53 0 0 chr12 45707465 45707503 -98574986 + AT_rich Low_complexity Low_complexity 1 38 0 327 269 44 75 chr12 45707763 45707956 -98574533 + L1MC/D LINE L1 4089 4276 -1870 244 286 11 0 chr12 45707978 45708069 -98574420 + L1MC/D LINE L1 5789 5880 -1928 32 0 0 0 chr12 45708284 45708316 -98574173 + AT_rich Low_complexity Low_complexity 1 32 0 244 250 29 15 chr12 45708796 45708864 -98573625 + L2 LINE L2 2307 2375 -939 557 213 37 29 chr12 45709959 45710095 -98572394 - MIR SINE MIR 0 262 126 26 74 0 0 chr12 45710095 45710149 -98572340 + AT_rich Low_complexity Low_complexity 1 54 0 192 262 66 0 chr12 45710149 45710210 -98572279 - MIR SINE MIR -124 138 74 204 238 188 0 chr12 45710259 45710339 -98572150 - MIR SINE MIR -94 168 74 23 0 0 0 chr12 45710351 45710374 -98572115 + AT_rich Low_complexity Low_complexity 1 23 0 208 321 57 19 chr12 45710643 45710749 -98571740 - MIR SINE MIR -105 157 48 4572 41 2 2 chr12 45711423 45711984 -98570505 + L1PA4 LINE L1 5593 6153 -2 216 0 0 0 chr12 45711999 45712023 -98570466 + (A)n Simple_repeat Simple_repeat 1 24 0 655 168 0 0 chr12 45712057 45712164 -98570325 - FLAM_C SINE Alu -36 107 1 2133 119 3 0 chr12 45712195 45712490 -98569999 + AluSc SINE Alu 1 296 -13 292 247 0 0 chr12 45714535 45714612 -98567877 + L2 LINE L2 1008 1084 -2230 385 82 0 16 chr12 45714633 45714694 -98567795 + L1PA6 LINE L1 6095 6154 0 1897 276 70 29 chr12 45714768 45715761 -98566728 + L1M4 LINE L1 3812 4844 -1302 2406 299 44 28 chr12 45716155 45717069 -98565420 + L2 LINE L2 1884 2811 -503 227 195 182 13 chr12 45717122 45717199 -98565290 + MER69 DNA AcHobo 2434 2523 -3 207 374 62 39 chr12 45718018 45718553 -98563936 - L2 LINE L2 -914 2400 1854 305 209 15 15 chr12 45718814 45718881 -98563608 + Charlie8 DNA MER1_type 116 182 -2235 2058 112 37 40 chr12 45719931 45720307 -98562182 - THE1C LTR MaLR 0 375 1 13559 202 46 24 chr12 45721010 45724062 -98558427 + L1PB3 LINE L1 199 3184 -3686 2262 68 3 17 chr12 45724062 45724357 -98558132 + AluY SINE Alu 1 291 -20 13559 202 46 24 chr12 45724357 45727695 -98554794 + L1PB3 LINE L1 3184 6862 -8 793 279 48 6 chr12 45728865 45729177 -98553312 + L1ME3A LINE L1 5638 5962 -208 1939 160 31 18 chr12 45729431 45729813 -98552676 + L1MA8 LINE L1 5902 6288 -3 24 0 0 0 chr12 45729813 45729837 -98552652 + AT_rich Low_complexity Low_complexity 1 24 0 183 392 72 10 chr12 45730300 45730397 -98552092 - L2 LINE L2 -281 2991 2889 6932 9 0 0 chr12 45730445 45731226 -98551263 - L1HS LINE L1 -1 6154 5374 8521 23 0 0 chr12 45731226 45732239 -98550250 + L1HS LINE L1 4350 5362 -784 964 316 16 30 chr12 45732232 45732666 -98549823 + L1MC4a LINE L1 5511 5938 -1870 * 439 308 86 36 chr12 45732875 45733177 -98549312 + L2 LINE L2 2988 3304 -9 1004 206 121 26 chr12 45733299 45733678 -98548811 + Charlie4a DNA MER1_type 35 449 -59 757 261 15 25 chr12 45733990 45734193 -98548296 - MIR SINE MIR -56 206 6 698 245 178 40 chr12 45734235 45734656 -98547833 - L2 LINE L2 -10 3303 2825 226 87 43 0 chr12 45734942 45734988 -98547501 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 1421 151 80 20 chr12 45734988 45735239 -98547250 - AluSq SINE Alu -47 266 1 7032 101 18 20 chr12 45735250 45736532 -98545957 - L1MA1 LINE L1 0 6302 5024 224 380 93 0 chr12 45736641 45736749 -98545740 + L2 LINE L2 3154 3271 -1 2344 98 0 0 chr12 45736836 45737133 -98545356 - AluSg SINE Alu -11 299 3 2226 71 42 3 chr12 45737771 45738054 -98544435 - AluSc SINE Alu -15 294 1 297 284 58 71 chr12 45739141 45739296 -98543193 + MIR SINE MIR 46 198 -64 180 0 0 0 chr12 45739644 45739664 -98542825 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 23 33 0 0 chr12 45740329 45740359 -98542130 + AT_rich Low_complexity Low_complexity 1 30 0 1529 189 13 42 chr12 45740901 45741213 -98541276 + AluJo SINE Alu 1 303 -9 279 358 25 25 chr12 45741584 45741746 -98540743 + MLT1J2 LTR MaLR 1 162 -288 209 323 32 0 chr12 45741862 45741924 -98540565 + L2 LINE L2 3241 3304 -9 831 166 90 52 chr12 45742752 45742963 -98539526 - MER20 DNA MER1_type 0 219 1 606 314 106 22 chr12 45743446 45743803 -98538686 + LTR16B LTR ERVL 78 464 0 314 247 8 89 chr12 45745939 45746174 -98536315 + L1M4 LINE L1 3842 4057 -2089 25 99 0 0 chr12 45746939 45747020 -98535469 + AT_rich Low_complexity Low_complexity 1 81 0 30 45 0 0 chr12 45747131 45747175 -98535314 + AT_rich Low_complexity Low_complexity 1 44 0 293 24 0 0 chr12 45747304 45747346 -98535143 + L1MA3 LINE L1 6264 6305 0 775 135 153 0 chr12 45748009 45748172 -98534317 + Charlie4 DNA MER1_type 38 225 -1736 366 325 121 70 chr12 45749338 45750051 -98532438 + L1M4 LINE L1 489 1237 -5612 369 194 250 32 chr12 45750677 45750801 -98531688 + MER69 DNA AcHobo 2373 2523 -3 2286 112 0 3 chr12 45751876 45752188 -98530301 - AluSx SINE Alu 0 312 2 1230 183 33 44 chr12 45752657 45752930 -98529559 + AluJo SINE Alu 22 291 -21 28 29 0 0 chr12 45752930 45752965 -98529524 + AT_rich Low_complexity Low_complexity 1 35 0 416 333 53 4 chr12 45753082 45753294 -98529195 + MIR SINE MIR 34 252 -10 1205 155 28 0 chr12 45753498 45753711 -98528778 - MER20 DNA MER1_type 0 219 1 933 218 58 14 chr12 45754138 45754432 -98528057 - L1MEc LINE L1 -4088 2308 2002 654 283 4 22 chr12 45754522 45754748 -98527741 - L1MEc LINE L1 -4638 1758 1537 5047 240 7 12 chr12 45754946 45756247 -98526242 + L1P LINE L1 1026 2319 -3827 3998 179 18 6 chr12 45756532 45757088 -98525401 + L1P LINE L1 4233 4802 -1344 2088 133 0 0 chr12 45757088 45757382 -98525107 + AluSx SINE Alu 19 312 0 3998 179 18 6 chr12 45757382 45757611 -98524878 + L1P LINE L1 4802 5027 -1119 439 265 53 47 chr12 45759320 45759490 -98522999 - L1ME3A LINE L1 -18 6152 5982 2193 113 0 22 chr12 45759665 45759985 -98522504 + AluSq SINE Alu 1 313 0 358 269 125 37 chr12 45759985 45760201 -98522288 + L1M4 LINE L1 3636 3870 -2978 2073 117 0 3 chr12 45760320 45760626 -98521863 + AluSx SINE Alu 1 305 0 451 259 95 19 chr12 45760928 45761245 -98521244 + L1M4 LINE L1 5639 5979 -869 758 225 157 12 chr12 45761271 45761660 -98520829 + L1ME3A LINE L1 5122 5570 -592 731 215 10 25 chr12 45761662 45761862 -98520627 + L1ME3A LINE L1 5724 5920 -250 406 63 0 0 chr12 45761964 45762027 -98520462 + Alu SINE Alu 250 312 -6 219 69 0 0 chr12 45762032 45762061 -98520428 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2276 99 0 0 chr12 45762073 45762367 -98520122 + AluSg SINE Alu 1 294 -16 244 263 61 10 chr12 45762925 45763024 -98519465 - HAL1b LINE L1 -767 581 478 433 291 76 38 chr12 45763092 45763435 -98519054 - HAL1b LINE L1 -896 452 97 324 158 0 0 chr12 45763450 45763507 -98518982 + C-rich Low_complexity Low_complexity 3 59 0 4836 158 34 1 chr12 45763608 45763766 -98518723 - L1PB1 LINE L1 -198 5953 5802 513 0 0 0 chr12 45763766 45763823 -98518666 + (TA)n Simple_repeat Simple_repeat 2 58 0 4836 158 34 1 chr12 45763823 45765322 -98517167 - L1PB1 LINE L1 -349 5802 4238 2450 250 87 10 chr12 45765322 45766119 -98516370 - L1MEc LINE L1 -5102 1294 437 2259 74 7 17 chr12 45769554 45769850 -98512639 - AluY SINE Alu -18 293 1 1397 123 9 0 chr12 45773542 45773753 -98508736 - L1MA3 LINE L1 -417 5888 5676 2540 62 0 7 chr12 45774821 45775129 -98507360 - AluY SINE Alu -5 306 1 1491 172 64 17 chr12 45775193 45775490 -98506999 + AluJb SINE Alu 1 311 -1 244 378 58 17 chr12 45775746 45775918 -98506571 + L2 LINE L2 2934 3112 -160 222 37 0 0 chr12 45777369 45777396 -98505093 + (TG)n Simple_repeat Simple_repeat 1 27 0 245 183 17 0 chr12 45777396 45777456 -98505033 + GA-rich Low_complexity Low_complexity 2 62 0 334 331 79 16 chr12 45782451 45782578 -98499911 - L2 LINE L2 -16 3256 3122 4103 51 34 6 chr12 45782772 45783331 -98499158 + L1PA7 LINE L1 5600 6173 0 328 296 0 0 chr12 45783358 45783429 -98499060 - L2 LINE L2 -2 3270 3200 909 225 16 32 chr12 45783512 45783765 -98498724 + LTR52 LTR ERVL 2 250 -171 13329 23 0 5 chr12 45783765 45785359 -98497130 - L1P LINE L1 -1690 4456 2871 3988 7 0 0 chr12 45785357 45785807 -98496682 + L1HS LINE L1 5706 6155 0 * 194 104 0 83 chr12 45785809 45785857 -98496632 + (A)n Simple_repeat Simple_repeat 1 44 0 390 219 55 77 chr12 45785857 45786040 -98496449 + LTR52 LTR ERVL 243 421 0 1886 246 70 31 chr12 45786041 45786581 -98495908 + MLT1E LTR MaLR 33 593 0 1831 215 22 17 chr12 45787507 45787957 -98494532 - L1MC3 LINE L1 -19 7766 7341 366 336 76 40 chr12 45787975 45788225 -98494264 - L2 LINE L2 -574 2740 2482 214 377 18 0 chr12 45788227 45788341 -98494148 - L2 LINE L2 -1218 2096 1981 274 313 61 27 chr12 45788638 45788785 -98493704 - MIR SINE MIR 0 262 111 192 224 0 0 chr12 45788922 45788971 -98493518 + L2 LINE L2 3264 3312 -1 270 295 0 67 chr12 45789516 45789621 -98492868 + L2 LINE L2 3198 3295 -18 1575 298 68 16 chr12 45790011 45790639 -98491850 - MLT2F LTR ERVL -2 661 1 234 232 208 56 chr12 45791819 45791944 -98490545 + MIR SINE MIR 100 243 -19 1937 174 14 8 chr12 45791944 45792305 -98490184 - MLT1A1 LTR MaLR -2 363 1 253 263 0 0 chr12 45793049 45793106 -98489383 - L2 LINE L2 -16 3297 3241 2547 54 0 0 chr12 45794537 45794834 -98487655 + AluY SINE Alu 1 297 -14 494 251 47 47 chr12 45795080 45795271 -98487218 - L2 LINE L2 0 3313 3123 23 0 0 0 chr12 45795897 45795920 -98486569 + AT_rich Low_complexity Low_complexity 1 23 0 666 100 0 0 chr12 45795966 45796056 -98486433 - AluSg/x SINE Alu -12 300 211 24 0 0 0 chr12 45796315 45796339 -98486150 + AT_rich Low_complexity Low_complexity 1 24 0 656 159 0 6 chr12 45796385 45796631 -98485858 + AluJ SINE Alu 7 301 -11 2533 156 31 21 chr12 45797286 45797772 -98484717 - L1PA16 LINE L1 0 6166 5676 409 296 123 48 chr12 45799070 45799421 -98483068 + L2 LINE L2 2109 2485 -829 497 281 176 0 chr12 45800442 45800595 -98481894 + MER5A DNA MER1_type 4 183 -6 322 219 26 0 chr12 45801224 45801338 -98481151 + CT-rich Low_complexity Low_complexity 4 120 0 261 319 116 7 chr12 45801838 45801976 -98480513 + MIR3 SINE MIR 56 208 0 1818 142 23 32 chr12 45802601 45802910 -98479579 - AluSx SINE Alu -6 306 1 21 57 0 0 chr12 45804494 45804529 -98477960 + AT_rich Low_complexity Low_complexity 1 35 0 4952 127 43 82 chr12 45804626 45805881 -98476608 - L1MA8 LINE L1 -4 6287 5088 7129 26 0 2 chr12 45805881 45806714 -98475775 + L1PA3 LINE L1 5317 6152 -3 183 42 0 0 chr12 45806723 45806747 -98475742 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr12 45807421 45807451 -98475038 + AT_rich Low_complexity Low_complexity 1 30 0 6096 172 25 1 chr12 45807467 45808637 -98473852 - L1MA8 LINE L1 -1053 5093 3896 1127 172 0 5 chr12 45808629 45808838 -98473651 - L1MA8 LINE L1 -2508 3638 3431 * 1785 238 78 17 chr12 45808956 45809597 -98472892 - L1ME1 LINE L1 -7 6553 5782 20134 75 3 3 chr12 45809597 45813091 -98469398 + L1PA6 LINE L1 2653 6151 -3 1785 238 78 17 chr12 45813091 45813350 -98469139 - L1ME1 LINE L1 -778 5782 5540 1015 165 0 6 chr12 45813356 45813514 -98468975 - AluJb SINE Alu -21 291 135 1589 163 4 8 chr12 45813514 45813765 -98468724 - AluSx SINE Alu -14 298 49 8330 137 21 18 chr12 45813766 45816289 -98466200 - L1MA1 LINE L1 -77 6225 3701 1773 246 31 20 chr12 45816275 45816730 -98465759 - L1M1 LINE L1 -7081 484 25 * 4437 251 116 39 chr12 45816735 45818020 -98464469 - L1ME1 LINE L1 -1140 5400 4215 2533 23 40 10 chr12 45818020 45818322 -98464167 - AluY SINE Alu 0 311 1 4437 251 116 39 chr12 45818322 45819014 -98463475 - L1ME1 LINE L1 -2325 4215 3577 2209 113 3 0 chr12 45819014 45819307 -98463182 - AluSp SINE Alu -19 294 1 4437 251 116 39 chr12 45819307 45819741 -98462748 - L1ME1 LINE L1 -2963 3577 2803 4829 158 32 13 chr12 45819773 45821071 -98461418 - L1MA4A LINE L1 -27 6276 4893 1955 285 127 81 chr12 45821090 45822464 -98460025 - L1M2 LINE L1 -5404 1445 8 7870 16 0 0 chr12 45822560 45823631 -98458858 - L1PA3 LINE L1 0 6155 5085 5746 26 0 1 chr12 45823631 45824319 -98458170 + L1PA3 LINE L1 4424 5110 -1036 186 235 49 49 chr12 45824327 45824408 -98458081 - L2 LINE L2 -2535 779 699 820 247 66 34 chr12 45824430 45824864 -98457625 - L1ME1 LINE L1 -3726 2848 2407 348 282 47 39 chr12 45824889 45825144 -98457345 - L1ME1 LINE L1 -4358 2182 1926 1438 235 29 2 chr12 45825235 45825647 -98456842 - L1ME2 LINE L1 -232 6212 5764 239 182 121 61 chr12 45825662 45825761 -98456728 - L1ME2 LINE L1 -656 5802 5698 562 207 0 33 chr12 45825761 45825882 -98456607 - L1MC1 LINE L1 -6 6327 6211 566 155 70 8 chr12 45825924 45826053 -98456436 - L1ME2 LINE L1 -3126 3300 3164 1290 246 56 13 chr12 45826062 45826509 -98455980 - L1ME2 LINE L1 -3510 2916 2451 1678 128 30 0 chr12 45826512 45826809 -98455680 - L1ME2 LINE L1 -4069 2357 2052 270 0 0 0 chr12 45826826 45826856 -98455633 + (TG)n Simple_repeat Simple_repeat 1 30 0 7011 175 28 76 chr12 45826883 45827540 -98454949 - L1ME2 LINE L1 -4752 1674 987 1727 153 15 8 chr12 45827540 45827802 -98454687 - AluSx SINE Alu -44 268 5 7011 175 28 76 chr12 45827802 45828084 -98454405 - L1ME2 LINE L1 -5439 987 693 2305 138 25 0 chr12 45828084 45828439 -98454050 - THE1B LTR MaLR 0 364 1 7011 175 28 76 chr12 45828439 45829187 -98453302 - L1ME2 LINE L1 -5733 693 66 738 252 121 53 chr12 45829212 45829826 -98452663 - L1ME LINE L1 -4613 1467 819 383 22 0 0 chr12 45831544 45831589 -98450900 - L1P LINE L1 -1678 4468 4424 7842 17 0 0 chr12 45831589 45832660 -98449829 + L1PA3 LINE L1 5085 6155 0 1793 298 12 12 chr12 45832756 45833243 -98449246 + L1M2 LINE L1 8 494 -6355 228 386 80 0 chr12 45833260 45833423 -98449066 + L1M2 LINE L1 610 785 -6064 913 348 53 13 chr12 45833482 45833956 -98448533 + L1M2 LINE L1 580 1072 -5777 1451 271 125 51 chr12 45834273 45835670 -98446819 - L1ME LINE L1 -4613 1467 6 24 0 0 0 chr12 45835831 45835855 -98446634 + AT_rich Low_complexity Low_complexity 1 24 0 274 271 47 12 chr12 45835872 45835957 -98446532 - L2 LINE L2 -5 3308 3221 652 278 96 86 chr12 45838859 45838920 -98443569 + LTR33 LTR ERVL 7 66 -455 2467 41 9 35 chr12 45838920 45839239 -98443250 - AluY SINE Alu 0 311 1 652 278 96 86 chr12 45839239 45839479 -98443010 + LTR33 LTR ERVL 66 311 -210 294 73 0 0 chr12 45839479 45839520 -98442969 + (TC)n Simple_repeat Simple_repeat 1 41 0 777 318 99 56 chr12 45839568 45840373 -98442116 + L2 LINE L2 1921 2760 -554 320 394 39 26 chr12 45840655 45840810 -98441679 + L2 LINE L2 3112 3268 -4 1709 163 5 122 chr12 45840831 45841273 -98441216 + MLT1B LTR MaLR 1 390 0 22 70 0 0 chr12 45841287 45841330 -98441159 + AT_rich Low_complexity Low_complexity 1 43 0 204 343 36 50 chr12 45841683 45841823 -98440666 - L2 LINE L2 0 3313 3176 7821 116 37 3 chr12 45842254 45843442 -98439047 + Tigger1 DNA MER2_type 1191 2418 0 357 338 79 47 chr12 45843446 45843763 -98438726 + L3 LINE CR1 1247 1573 -4 235 316 32 21 chr12 45845530 45845625 -98436864 + MIR3 SINE MIR 108 203 -5 256 302 0 0 chr12 45845651 45845714 -98436775 + CT-rich Low_complexity Low_complexity 1 63 0 25 51 0 0 chr12 45845721 45845760 -98436729 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr12 45845837 45845867 -98436622 + AT_rich Low_complexity Low_complexity 1 30 0 6719 51 6 10 chr12 45846302 45847737 -98434752 - L1PA7 LINE L1 0 6154 4709 714 269 98 37 chr12 45850978 45851275 -98431214 - MER102b DNA MER1_type -1 340 26 248 210 272 12 chr12 45851315 45851396 -98431093 + L2 LINE L2 3190 3291 -22 2383 88 3 3 chr12 45852241 45852547 -98429942 - AluSc SINE Alu -3 306 1 2011 121 21 3 chr12 45853062 45853351 -98429138 + AluSx SINE Alu 1 294 -18 327 342 17 17 chr12 45853370 45853487 -98429002 + MER5A DNA MER1_type 72 188 -1 3522 75 4 11 chr12 45854042 45854511 -98427978 + MER41A LTR ERV1 1 466 -88 499 311 31 18 chr12 45854543 45854768 -98427721 - MIR SINE MIR -2 260 33 1132 292 62 8 chr12 45856096 45856452 -98426037 + LTR16A LTR ERVL 28 402 -48 23 0 0 0 chr12 45857784 45857807 -98424682 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr12 45857934 45857968 -98424521 + AT_rich Low_complexity Low_complexity 1 34 0 339 286 119 48 chr12 45858312 45858480 -98424009 + MIR SINE MIR 70 249 -13 340 213 52 97 chr12 45858516 45858670 -98423819 + MIR SINE MIR 63 207 -43 309 338 15 23 chr12 45858684 45858817 -98423672 - MIR SINE MIR -109 153 22 245 306 75 30 chr12 45859035 45859234 -98423255 + L2 LINE L2 2453 2660 -654 904 225 20 5 chr12 45859299 45859499 -98422990 - MER63A DNA MER1_type 0 210 8 205 250 21 0 chr12 45859539 45859587 -98422902 + L2 LINE L2 3261 3309 -4 1217 168 105 0 chr12 45859731 45859940 -98422549 + AluSx SINE Alu 1 231 -81 181 300 33 0 chr12 45859946 45860006 -98422483 - MIR SINE MIR -131 131 70 387 163 0 7 chr12 45860348 45860425 -98422064 + AluJ/FRAM SINE Alu 233 295 -7 267 316 51 0 chr12 45860487 45860604 -98421885 + L2 LINE L2 2920 3042 -230 23 54 0 0 chr12 45861262 45861299 -98421190 + AT_rich Low_complexity Low_complexity 1 37 0 314 218 0 46 chr12 45861523 45861610 -98420879 - L1MC4 LINE L1 -1346 6696 6614 1478 192 34 86 chr12 45861615 45862000 -98420489 - MLT1A1 LTR MaLR 0 365 1 2555 193 46 59 chr12 45862021 45862634 -98419855 + MER77 LTR ERV1 1 605 0 264 192 19 0 chr12 45862775 45862827 -98419662 - MIR SINE MIR -113 149 97 456 314 58 11 chr12 45862853 45863044 -98419445 - MIR SINE MIR -62 200 1 596 318 86 13 chr12 45863641 45863874 -98418615 + MIR SINE MIR 2 251 -11 204 163 0 0 chr12 45866442 45866485 -98416004 + T-rich Low_complexity Low_complexity 1 43 0 30 45 0 0 chr12 45866602 45866646 -98415843 + AT_rich Low_complexity Low_complexity 1 44 0 489 309 126 41 chr12 45866906 45867366 -98415123 + L2 LINE L2 1608 2106 -1208 313 352 41 7 chr12 45870031 45870176 -98412313 + MIR SINE MIR 37 186 -76 1468 197 53 3 chr12 45871273 45871572 -98410917 - MLT1A1 LTR MaLR -51 314 1 939 169 0 0 chr12 45871604 45871770 -98410719 - L1MA6 LINE L1 -2 6298 6133 25 65 0 0 chr12 45872014 45872060 -98410429 + AT_rich Low_complexity Low_complexity 1 46 0 282 160 0 0 chr12 45872884 45872934 -98409555 + (TATG)n Simple_repeat Simple_repeat 2 51 0 205 71 0 48 chr12 45872976 45873018 -98409471 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 4664 33 0 0 chr12 45873018 45873563 -98408926 - L1PA4 LINE L1 -24 6131 5587 1036 238 26 67 chr12 45873662 45874003 -98408486 - LTR40b LTR ERVL -4 458 132 345 18 36 18 chr12 45874043 45874098 -98408391 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 273 247 0 0 chr12 45874123 45874220 -98408269 + (TA)n Simple_repeat Simple_repeat 1 97 0 1373 202 101 60 chr12 45874421 45874906 -98407583 + MLT1D LTR MaLR 1 505 0 292 254 105 9 chr12 45874937 45875051 -98407438 + L1ME4a LINE L1 5956 6080 -41 471 268 126 47 chr12 45875494 45875748 -98406741 + Charlie2 DNA MER1_type 2 275 -2507 620 229 65 25 chr12 45875750 45876029 -98406460 + Charlie2 DNA MER1_type 2176 2465 -397 2179 84 14 7 chr12 45877328 45877615 -98404874 + AluSg SINE Alu 3 291 -19 326 162 162 19 chr12 45878556 45878661 -98403828 - MER113 DNA MER1_type? -367 154 35 26 0 0 49 chr12 45878961 45878981 -98403508 + AT_rich Low_complexity Low_complexity 1 20 -19 2157 127 0 0 chr12 45878981 45879280 -98403209 - AluY SINE Alu -12 299 1 26 0 0 49 chr12 45879280 45879300 -98403189 + AT_rich Low_complexity Low_complexity 20 39 0 1630 196 36 0 chr12 45879301 45879663 -98402826 + L1M4 LINE L1 4439 4813 -1333 929 314 62 40 chr12 45879671 45880175 -98402314 + L1M2 LINE L1 1 515 -6334 288 351 56 32 chr12 45880220 45880503 -98401986 + L1M2 LINE L1 668 1565 -5273 2293 110 0 19 chr12 45881126 45881443 -98401046 + AluSx SINE Alu 1 311 -1 355 262 0 0 chr12 45881544 45881628 -98400861 + L1PA15-16 LINE L1 1472 1555 -5294 5564 245 21 21 chr12 45881662 45884310 -98398179 + L1PA15-16 LINE L1 1397 4147 -2702 272 273 128 43 chr12 45884311 45884498 -98397991 - L1ME LINE L1 -344 5777 5575 27 0 0 0 chr12 45884991 45885018 -98397471 + AT_rich Low_complexity Low_complexity 1 27 0 26 64 0 0 chr12 45885028 45885075 -98397414 + AT_rich Low_complexity Low_complexity 1 47 0 283 284 40 0 chr12 45885137 45885211 -98397278 + MIR SINE MIR 1 77 -185 685 284 66 0 chr12 45885251 45885448 -98397041 + MIR SINE MIR 53 262 0 231 276 19 38 chr12 45885980 45886085 -98396404 + (TA)n Simple_repeat Simple_repeat 1 103 0 334 260 66 88 chr12 45886796 45886977 -98395512 + MER69A DNA AcHobo 1 177 0 748 273 91 74 chr12 45888388 45888872 -98393617 + MLT1J LTR MaLR 2 493 -18 248 37 0 74 chr12 45889455 45889509 -98392980 + (TCTCCC)n Simple_repeat Simple_repeat 1 50 0 5978 75 38 51 chr12 45889509 45890529 -98391960 + SVA Other Other 1 868 -592 6011 81 42 40 chr12 45891631 45892577 -98389912 + SVA Other Other 439 1386 0 15089 190 21 23 chr12 45892596 45894387 -98388102 + L1PA15 LINE L1 1891 3686 -2479 288 0 0 0 chr12 45894387 45894419 -98388070 + (CA)n Simple_repeat Simple_repeat 2 33 0 15089 190 21 23 chr12 45894419 45895388 -98387101 + L1PA15 LINE L1 3686 4656 -1509 340 200 0 0 chr12 45895388 45895443 -98387046 + 5S rRNA rRNA 1 55 -66 15089 190 21 23 chr12 45895443 45896845 -98385644 + L1PA15 LINE L1 4656 6096 -69 30 45 0 0 chr12 45898788 45898832 -98383657 + AT_rich Low_complexity Low_complexity 1 44 0 830 185 27 0 chr12 45898832 45898978 -98383511 - FRAM SINE Alu -30 146 1 2025 61 82 4 chr12 45899224 45899504 -98382985 + AluY SINE Alu 1 302 -9 229 287 108 31 chr12 45899532 45899661 -98382828 - MIR SINE MIR -122 140 2 2467 51 0 0 chr12 45899861 45900157 -98382332 + AluY SINE Alu 1 296 -15 22 35 0 0 chr12 45900280 45900309 -98382180 + AT_rich Low_complexity Low_complexity 1 29 0 23 78 0 0 chr12 45900324 45900375 -98382114 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr12 45900515 45900544 -98381945 + AT_rich Low_complexity Low_complexity 1 29 0 2035 128 3 0 chr12 45900831 45901129 -98381360 + AluSx SINE Alu 1 299 -13 329 229 101 9 chr12 45901599 45901708 -98380781 - LTR67 LTR ERVL 0 557 439 308 312 199 11 chr12 45903118 45903304 -98379185 + L2 LINE L2 2738 2958 -356 7232 123 19 1 chr12 45903358 45905305 -98377184 - L1MA2 LINE L1 0 6304 4321 1123 162 10 0 chr12 45905306 45905503 -98376986 + LTR9B LTR ERV1 445 643 -1 2406 190 16 37 chr12 45905503 45906019 -98376470 + HUERS-P3b LTR ERV1 1 505 -6913 4918 116 11 9 chr12 45906134 45907516 -98374973 + HUERS-P3b LTR ERV1 891 2337 -5081 1184 147 39 20 chr12 45907500 45907704 -98374785 + HUERS-P3b LTR ERV1 2451 2658 -4760 * 2003 189 50 5 chr12 45907704 45908086 -98374403 - LTR8 LTR ERV1 -292 399 1 5955 84 4 12 chr12 45908086 45908895 -98373594 + HUERS-P3b LTR ERV1 3073 3874 -3544 * 16417 100 15 7 chr12 45908886 45911488 -98371001 + HUERS-P3b LTR ERV1 4713 8918 -1 3241 106 58 40 chr12 45911488 45912038 -98370451 + LTR9B LTR ERV1 1 560 -84 592 94 0 0 chr12 45912064 45912149 -98370340 - L1 LINE L1 -1816 4330 4246 416 108 0 15 chr12 45912150 45912215 -98370274 - Alu SINE Alu -15 297 234 2851 199 66 7 chr12 45912219 45912782 -98369707 - L1M1 LINE L1 -6673 892 297 3704 164 42 5 chr12 45912783 45913635 -98368854 - L1 LINE L1 -3211 4354 3461 18944 153 26 56 chr12 45913646 45915533 -98366956 - L1 LINE L1 -4067 3498 1767 267 31 0 0 chr12 45915533 45915565 -98366924 + (TC)n Simple_repeat Simple_repeat 1 32 0 18944 153 26 56 chr12 45915565 45917270 -98365219 - L1 LINE L1 -5798 1767 13 499 304 144 8 chr12 45917285 45917548 -98364941 + L2 LINE L2 3014 3312 -1 416 316 86 0 chr12 45917725 45917842 -98364647 + L2 LINE L2 3146 3272 0 545 192 0 58 chr12 45917957 45918077 -98364412 - L2 LINE L2 -1 3312 3200 303 286 120 56 chr12 45918385 45918651 -98363838 - L1 LINE L1 -3627 2519 2237 911 309 33 25 chr12 45918750 45919109 -98363380 - LTR16B LTR ERVL -26 438 77 281 262 67 20 chr12 45919213 45919228 -98363261 - L1MA10 LINE L1 -3 6331 6317 1764 182 46 105 chr12 45919228 45919694 -98362795 - L1ME2 LINE L1 -9 6224 5732 2361 58 0 4 chr12 45919694 45920005 -98362484 - AluSc SINE Alu 0 317 8 1764 182 46 105 chr12 45920005 45920164 -98362325 - L1ME2 LINE L1 -501 5732 5635 1906 128 32 52 chr12 45920164 45920508 -98361981 + MER1B DNA MER1_type 1 337 0 1764 182 46 105 chr12 45920508 45920527 -98361962 - L1ME2 LINE L1 -598 5635 5616 1525 231 58 25 chr12 45920556 45921109 -98361380 - L1ME2 LINE L1 -1543 4672 4102 1007 164 6 17 chr12 45921395 45921572 -98360917 + FAM SINE Alu 1 175 0 24 32 0 0 chr12 45923346 45923377 -98359112 + AT_rich Low_complexity Low_complexity 1 31 0 223 237 51 0 chr12 45923758 45923817 -98358672 + MIR SINE MIR 180 241 -21 3469 130 41 3 chr12 45923893 45924557 -98357932 - L1MA8 LINE L1 -426 5865 5170 400 129 48 0 chr12 45924623 45924685 -98357804 + AluS SINE Alu 2 66 -237 2493 84 0 0 chr12 45924714 45925023 -98357466 + AluSc SINE Alu 1 309 0 288 0 0 0 chr12 45925027 45925059 -98357430 + (TA)n Simple_repeat Simple_repeat 2 33 0 315 189 63 11 chr12 45925428 45925523 -98356966 + L1ME3A LINE L1 5850 5949 -221 1787 282 49 34 chr12 45925688 45926443 -98356046 - L1ME2 LINE L1 -2500 3715 2940 1904 126 30 0 chr12 45926443 45926712 -98355777 + AluSx SINE Alu 23 299 -13 1787 282 49 34 chr12 45926712 45926934 -98355555 - L1ME2 LINE L1 -3275 2940 2723 380 259 48 7 chr12 45926953 45927100 -98355389 - L1ME2 LINE L1 -4934 1462 1310 291 244 237 22 chr12 45927118 45927253 -98355236 + MIR SINE MIR 98 261 -1 265 315 141 33 chr12 45927398 45927582 -98354907 + MIR SINE MIR 2 205 -57 208 299 75 0 chr12 45927742 45927809 -98354680 - L2 LINE L2 -8 3264 3193 1806 130 75 32 chr12 45928009 45928354 -98354135 + MER46B DNA MER2_type 2 236 0 21 0 0 0 chr12 45930601 45930622 -98351867 + AT_rich Low_complexity Low_complexity 1 21 0 186 318 0 0 chr12 45930668 45930712 -98351777 - L2 LINE L2 -19 3253 3210 1033 226 89 71 chr12 45930972 45931476 -98351013 + MER113 DNA MER1_type? 4 516 -5 1761 85 147 4 chr12 45931649 45931907 -98350582 - AluSg SINE Alu -15 295 1 249 293 53 33 chr12 45931994 45932144 -98350345 + MIR SINE MIR 64 216 -46 5816 114 21 0 chr12 45932311 45932765 -98349724 + L1PA15 LINE L1 4690 5133 -1032 2200 118 0 0 chr12 45932765 45933061 -98349428 + AluSx SINE Alu 1 296 -16 5816 114 21 0 chr12 45933061 45934073 -98348416 + L1PA15 LINE L1 5133 6163 -2 21 57 0 0 chr12 45934703 45934738 -98347751 + AT_rich Low_complexity Low_complexity 1 35 0 1099 238 8 4 chr12 45934968 45935212 -98347277 - MIR SINE MIR -11 251 7 196 356 69 11 chr12 45935856 45935943 -98346546 - MIR SINE MIR -145 117 26 181 342 135 0 chr12 45936431 45936542 -98345947 + MIR SINE MIR 129 254 -8 1124 211 66 36 chr12 45937469 45937828 -98344661 + L1ME1 LINE L1 5809 6158 -8 1446 172 61 40 chr12 45938395 45938691 -98343798 + AluJo SINE Alu 3 304 -8 259 293 120 52 chr12 45938795 45938986 -98343503 - L3 LINE CR1 -264 1313 1110 218 253 12 108 chr12 45939059 45939142 -98343347 - L3 LINE CR1 -485 1092 1018 714 342 83 23 chr12 45939151 45939499 -98342990 - L3 LINE CR1 -861 716 348 246 86 0 0 chr12 45940137 45940172 -98342317 + HSMAR1 DNA Mariner 1 35 -1252 938 293 91 61 chr12 45940315 45940755 -98341734 + MLT1K LTR MaLR 136 588 0 401 331 80 11 chr12 45940891 45941066 -98341423 + MIR3 SINE MIR 16 202 -6 2557 55 0 6 chr12 45941253 45941564 -98340925 + AluY SINE Alu 1 309 -2 30 0 0 0 chr12 45941564 45941594 -98340895 + AT_rich Low_complexity Low_complexity 1 30 0 2135 115 3 0 chr12 45941998 45942293 -98340196 - AluSg SINE Alu -14 296 1 202 392 92 0 chr12 45943360 45943480 -98339009 + MER5A DNA MER1_type 59 189 0 27 0 0 0 chr12 45943657 45943684 -98338805 + AT_rich Low_complexity Low_complexity 1 27 0 40 37 0 0 chr12 45943770 45943824 -98338665 + AT_rich Low_complexity Low_complexity 1 54 0 633 278 126 5 chr12 45943824 45944047 -98338442 - MIR SINE MIR 0 262 13 26 88 0 0 chr12 45945127 45945195 -98337294 + AT_rich Low_complexity Low_complexity 1 68 0 1873 95 4 0 chr12 45945653 45945905 -98336584 - AluSg SINE Alu -12 298 46 298 250 97 28 chr12 45946452 45946524 -98335965 - L3 LINE CR1 -15 1562 1486 * 389 317 43 19 chr12 45946520 45946681 -98335808 - L2 LINE L2 0 3313 3149 1668 215 132 35 chr12 45946842 45947335 -98335154 + MLT1F LTR MaLR 1 541 -1 509 260 35 81 chr12 45947534 45947707 -98334782 - MIR SINE MIR -34 228 64 255 354 152 0 chr12 45947839 45947938 -98334551 - L3 LINE CR1 -410 1167 1054 25 51 0 0 chr12 45948157 45948196 -98334293 + AT_rich Low_complexity Low_complexity 1 39 0 436 228 13 0 chr12 45949024 45949103 -98333386 + MER81 DNA DNA 32 111 -3 233 264 14 93 chr12 45949381 45949521 -98332968 + L1M4 LINE L1 3409 3537 -2609 2441 61 0 0 chr12 45949701 45949995 -98332494 + AluY SINE Alu 1 294 -17 2030 110 51 54 chr12 45950449 45950821 -98331668 + THE1C LTR MaLR 1 371 -4 411 271 20 66 chr12 45951007 45951158 -98331331 - MER5B DNA MER1_type 0 178 35 1068 200 33 19 chr12 45951178 45951393 -98331096 + MER58A DNA MER1_type 1 218 -6 2659 108 16 0 chr12 45951517 45951886 -98330603 + THE1C LTR MaLR 1 375 0 337 277 95 0 chr12 45953361 45953509 -98328980 + L1ME LINE L1 5617 5778 -343 21 0 0 0 chr12 45953558 45953579 -98328910 + AT_rich Low_complexity Low_complexity 1 21 0 2344 104 3 0 chr12 45953631 45953939 -98328550 + AluSq SINE Alu 1 309 -4 2159 113 3 3 chr12 45954099 45954392 -98328097 - AluSx SINE Alu -19 293 1 2098 107 0 0 chr12 45955023 45955327 -98327162 - AluSc SINE Alu 0 304 1 3121 106 13 11 chr12 45955617 45955707 -98326782 + L1PA16 LINE L1 5690 5778 -388 1379 204 50 0 chr12 45955707 45955986 -98326503 + AluJo SINE Alu 1 293 -19 3121 106 13 11 chr12 45955986 45956369 -98326120 + L1PA16 LINE L1 5778 6164 -2 21 36 0 0 chr12 45956683 45956711 -98325778 + AT_rich Low_complexity Low_complexity 1 28 0 836 333 42 15 chr12 45956891 45957293 -98325196 + L1MEc LINE L1 35 447 -5949 1506 195 55 111 chr12 45957314 45957512 -98324977 - MLT1F LTR MaLR -8 534 327 7403 34 19 0 chr12 45957512 45958472 -98324017 - L1PA5 LINE L1 -9 6145 5186 1506 195 55 111 chr12 45958472 45958725 -98323764 - MLT1F LTR MaLR -215 327 108 2239 164 45 14 chr12 45958793 45959214 -98323275 + L1MB3 LINE L1 5748 6181 -2 264 262 60 83 chr12 45959466 45959634 -98322855 - MIR SINE MIR -11 251 88 428 228 269 0 chr12 45959997 45960142 -98322347 + MER5A DNA MER1_type 1 184 -5 954 321 135 18 chr12 45962560 45963108 -98319381 + L2 LINE L2 321 932 -2382 582 308 121 38 chr12 45963148 45963480 -98319009 + L2 LINE L2 2677 2980 -333 2333 78 0 7 chr12 45963480 45963775 -98318714 - AluSg SINE Alu -16 294 2 582 308 121 38 chr12 45963775 45963991 -98318498 + L2 LINE L2 2980 3312 -1 194 316 98 47 chr12 45964099 45964333 -98318156 - L2 LINE L2 -353 2961 2716 231 36 0 0 chr12 45964971 45964999 -98317490 + (CA)n Simple_repeat Simple_repeat 1 28 0 2294 80 7 3 chr12 45965894 45966196 -98316293 + AluSx SINE Alu 3 305 -7 1215 249 154 27 chr12 45966413 45967289 -98315200 + L2 LINE L2 2341 3310 -3 361 267 127 27 chr12 45967776 45967926 -98314563 - MIR SINE MIR -14 248 84 240 193 114 23 chr12 45968375 45968463 -98314026 - L1ME4a LINE L1 -48 6073 5978 182 282 0 0 chr12 45969132 45969171 -98313318 + L2 LINE L2 1380 1418 -1896 253 274 164 14 chr12 45969337 45969410 -98313079 + Charlie1 DNA MER1_type 1 84 -2677 * 2630 174 86 0 chr12 45969396 45969964 -98312525 + Charlie1 DNA MER1_type 2144 2760 -1 256 293 0 37 chr12 45969977 45970059 -98312430 + C-rich Low_complexity Low_complexity 3 81 0 7803 104 27 55 chr12 45970388 45970453 -98312036 - HSMAR2 DNA Mariner -1 1301 1236 2115 118 17 0 chr12 45970453 45970740 -98311749 + AluSx SINE Alu 7 298 -14 7803 104 27 55 chr12 45970740 45972010 -98310479 - HSMAR2 DNA Mariner -66 1236 3 245 257 38 67 chr12 45972045 45972150 -98310339 + L2 LINE L2 2251 2352 -962 591 307 153 39 chr12 45972173 45972864 -98309625 + L2 LINE L2 2471 3234 -38 198 316 79 13 chr12 45972952 45973028 -98309461 + MIR SINE MIR 8 88 -174 320 346 32 0 chr12 45973059 45973215 -98309274 - L2 LINE L2 0 3313 3153 192 338 41 35 chr12 45974765 45974910 -98307579 + MIR SINE MIR 11 156 -106 857 274 16 92 chr12 45975486 45975683 -98306806 + L1MC4a LINE L1 7020 7230 -578 1827 149 30 0 chr12 45975683 45975951 -98306538 + AluJb SINE Alu 1 276 -36 857 274 16 92 chr12 45975951 45976253 -98306236 + L1MC4a LINE L1 7230 7481 -327 346 152 61 91 chr12 45976278 45976410 -98306079 + L1MC4 LINE L1 7914 8041 -1 314 290 37 62 chr12 45976665 45976827 -98305662 + MIR SINE MIR 3 160 -102 2232 119 12 91 chr12 45977058 45977488 -98305001 + MSTD LTR MaLR 1 396 0 310 333 32 16 chr12 45978108 45978294 -98304195 - MER5A DNA MER1_type 0 189 1 25 51 0 0 chr12 45979153 45979192 -98303297 + AT_rich Low_complexity Low_complexity 1 39 0 279 266 76 0 chr12 45980083 45980162 -98302327 + MIR SINE MIR 70 154 -108 2194 96 13 10 chr12 45980546 45980848 -98301641 - AluY SINE Alu -8 303 1 569 318 120 5 chr12 45981144 45981361 -98301128 - MIR SINE MIR 0 262 21 259 187 93 101 chr12 45981554 45981632 -98300857 - L1ME4a LINE L1 -7 6114 6036 893 97 0 8 chr12 45981632 45981756 -98300733 + L1PA10 LINE L1 6036 6158 -10 259 187 93 101 chr12 45981756 45981816 -98300673 - L1ME4a LINE L1 -85 6036 5977 601 276 75 27 chr12 45981829 45982123 -98300366 - L1ME4a LINE L1 -262 5859 5552 2160 75 51 14 chr12 45982180 45982475 -98300014 - AluY SINE Alu -5 306 1 630 274 75 0 chr12 45982500 45982686 -98299803 + MIR SINE MIR 60 259 -3 547 298 56 23 chr12 45982844 45983059 -98299430 - MIR SINE MIR -21 241 20 1747 177 10 3 chr12 45983414 45983708 -98298781 + AluJo SINE Alu 1 296 -16 25 0 0 0 chr12 45983887 45983912 -98298577 + AT_rich Low_complexity Low_complexity 1 25 0 324 354 19 0 chr12 45984705 45984863 -98297626 + L2 LINE L2 1847 2007 -1307 22 35 0 0 chr12 45985077 45985106 -98297383 + AT_rich Low_complexity Low_complexity 1 29 0 246 284 27 131 chr12 45985129 45985312 -98297177 - L2 LINE L2 -221 3051 2888 1136 205 35 35 chr12 45985322 45985576 -98296913 + AluJo SINE Alu 37 290 -22 1460 305 163 39 chr12 45985587 45986796 -98295693 - L2 LINE L2 -428 2886 1528 2211 93 10 0 chr12 45986875 45987175 -98295314 - AluSp SINE Alu -10 303 1 266 376 126 17 chr12 45987209 45987917 -98294572 + L2 LINE L2 2201 3063 -209 207 100 0 0 chr12 45988509 45988539 -98293950 + (CATA)n Simple_repeat Simple_repeat 2 31 0 28 48 0 0 chr12 45989590 45989632 -98292857 + AT_rich Low_complexity Low_complexity 1 42 0 1741 157 7 27 chr12 45989632 45989926 -98292563 - AluJb SINE Alu -24 288 1 340 339 31 8 chr12 45990182 45990309 -98292180 + MIR3 SINE MIR 54 183 -25 1656 124 25 84 chr12 45990507 45990829 -98291660 - MER21A LTR ERV1 -7 924 622 713 217 13 13 chr12 45991260 45991412 -98291077 - MLT1C LTR MaLR 0 467 316 509 210 116 71 chr12 45991399 45991587 -98290902 - MLT1D LTR MaLR -361 144 5 * 354 143 0 0 chr12 45991903 45991966 -98290523 + (TA)n Simple_repeat Simple_repeat 1 63 0 1887 135 62 38 chr12 45991968 45992308 -98290181 - MER7A DNA MER2_type 0 346 1 1514 116 31 9 chr12 45992345 45992569 -98289920 - AluSg/x SINE Alu -13 299 71 28 0 0 0 chr12 45992621 45992649 -98289840 + AT_rich Low_complexity Low_complexity 1 28 0 212 317 53 66 chr12 45993292 45993495 -98288994 + MIR SINE MIR 11 212 -50 1379 215 44 67 chr12 45993643 45994079 -98288410 + MLT1E3 LTR MaLR 124 569 -55 2104 107 0 4 chr12 45994079 45994360 -98288129 + AluSx SINE Alu 1 280 -32 198 0 0 0 chr12 45994360 45994382 -98288107 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 1379 215 44 67 chr12 45994382 45994443 -98288046 + MLT1E3 LTR MaLR 567 624 0 368 203 0 51 chr12 45994472 45994551 -98287938 - MLT1E1 LTR MaLR -539 115 41 2981 168 55 34 chr12 45994568 45994845 -98287644 + MSTB-int LTR MaLR 1042 1311 -340 2102 55 4 8 chr12 45994845 45995102 -98287387 - AluY SINE Alu -12 299 44 2981 168 55 34 chr12 45995102 45995421 -98287068 + MSTB-int LTR MaLR 1311 1651 0 1151 155 45 22 chr12 45995421 45995788 -98286701 + MSTB LTR MaLR 1 423 -3 366 237 311 0 chr12 45995857 45995992 -98286497 - MIR SINE MIR -74 188 12 230 276 164 15 chr12 45996036 45996170 -98286319 - MIR SINE MIR -12 250 97 1287 243 80 6 chr12 45996192 45996505 -98285984 + MLT1H LTR MaLR 24 359 -190 1516 193 20 20 chr12 45996582 45996878 -98285611 - AluJo SINE Alu -6 306 11 935 273 184 22 chr12 45998167 45998652 -98283837 - L2 LINE L2 0 3313 2746 204 296 204 19 chr12 45998738 45998846 -98283643 + MER5B DNA MER1_type 6 133 -45 2209 109 0 0 chr12 45998859 45999152 -98283337 + AluSc SINE Alu 1 293 -16 2171 36 66 0 chr12 45999307 45999581 -98282908 - AluY SINE Alu -19 292 1 482 219 272 6 chr12 46002413 46002582 -98279907 + MER58C DNA MER1_type 2 215 0 899 158 88 18 chr12 46002913 46002963 -98279526 + MER3 DNA MER1_type 1 62 -147 277 248 191 7 chr12 46002963 46003104 -98279385 - MER3 DNA MER1_type 0 209 43 2109 121 0 3 chr12 46007059 46007357 -98275132 - AluSq SINE Alu -16 297 1 40 37 0 0 chr12 46007747 46007801 -98274688 + AT_rich Low_complexity Low_complexity 1 54 0 1998 164 0 0 chr12 46008053 46008352 -98274137 + AluSx SINE Alu 1 299 -13 278 275 79 10 chr12 46009339 46009468 -98273021 + L1M3 LINE L1 5679 5817 -517 21 0 0 0 chr12 46010774 46010795 -98271694 + AT_rich Low_complexity Low_complexity 1 21 0 324 318 99 80 chr12 46012135 46012890 -98269599 + L1M2 LINE L1 490 1259 -5590 398 231 60 34 chr12 46014851 46014968 -98267521 - MER102b DNA MER1_type -4 337 218 983 140 41 23 chr12 46014970 46015141 -98267348 + AluJb SINE Alu 137 310 -2 330 270 40 46 chr12 46015141 46015293 -98267196 - MER102b DNA MER1_type -120 221 71 225 310 190 25 chr12 46015657 46015815 -98266674 + MIR SINE MIR 71 254 -8 189 289 19 19 chr12 46016789 46016841 -98265648 + MER5A DNA MER1_type 82 133 -56 1006 250 31 87 chr12 46017432 46017848 -98264641 + MLT1J LTR MaLR 100 492 -19 1612 149 30 34 chr12 46019029 46019324 -98263165 + AluJo SINE Alu 1 294 -18 680 237 31 70 chr12 46019773 46020012 -98262477 - MLT1J LTR MaLR -202 309 45 321 211 20 116 chr12 46020006 46020153 -98262336 + MER113 DNA MER1_type? 384 516 -5 * 1837 108 100 4 chr12 46020326 46020595 -98261894 - AluSg SINE Alu -15 295 1 206 204 45 0 chr12 46020919 46020963 -98261526 + CT-rich Low_complexity Low_complexity 3 48 0 187 143 29 0 chr12 46021666 46021701 -98260788 - L2 LINE L2 0 3272 3237 516 228 91 82 chr12 46021773 46021807 -98260682 + MIR SINE MIR 28 60 -202 2472 82 0 0 chr12 46021807 46022112 -98260377 - AluSq SINE Alu -8 305 1 516 228 91 82 chr12 46022112 46022309 -98260180 + MIR SINE MIR 60 261 -1 2380 81 0 16 chr12 46025501 46025810 -98256679 - AluSc SINE Alu -5 304 1 2214 88 7 10 chr12 46026560 46026857 -98255632 + AluSc SINE Alu 1 296 -13 255 170 0 0 chr12 46026866 46026913 -98255576 + GA-rich Low_complexity Low_complexity 4 50 0 2383 59 20 10 chr12 46028153 46028458 -98254031 + AluY SINE Alu 1 308 -3 1782 159 0 0 chr12 46028657 46028915 -98253574 - AluJb SINE Alu -54 258 1 285 309 36 55 chr12 46028990 46029100 -98253389 - MIR SINE MIR -83 125 18 21 36 0 0 chr12 46029804 46029832 -98252657 + AT_rich Low_complexity Low_complexity 1 28 0 914 174 0 30 chr12 46030083 46030250 -98252239 + AluJb SINE Alu 135 296 -16 494 244 124 34 chr12 46030514 46030723 -98251766 - MIR SINE MIR -31 231 4 2118 106 30 13 chr12 46030834 46031137 -98251352 - AluSc SINE Alu -1 308 1 209 233 0 0 chr12 46031376 46031419 -98251070 + (TTAA)n Simple_repeat Simple_repeat 4 46 0 2078 80 31 28 chr12 46031988 46032298 -98250191 + AluY SINE Alu 1 311 0 443 284 35 35 chr12 46032387 46032556 -98249933 - Charlie8 DNA MER1_type -2210 207 39 33 43 0 0 chr12 46032933 46032980 -98249509 + AT_rich Low_complexity Low_complexity 1 47 0 502 274 78 34 chr12 46033027 46033206 -98249283 - MER5A DNA MER1_type -2 187 1 213 315 116 7 chr12 46033217 46033363 -98249126 + L2 LINE L2 2221 2382 -932 361 133 17 0 chr12 46033603 46033663 -98248826 - MIR SINE MIR -13 249 189 412 339 35 11 chr12 46033951 46034125 -98248364 - MIR3 SINE MIR -6 202 25 248 296 0 25 chr12 46034149 46034230 -98248259 + L2 LINE L2 3201 3279 -34 503 271 100 17 chr12 46034473 46034713 -98247776 + L2 LINE L2 3016 3275 -38 1740 201 80 49 chr12 46035045 46035498 -98246991 + MLT1C LTR MaLR 1 467 0 201 344 0 0 chr12 46036165 46036229 -98246260 + CT-rich Low_complexity Low_complexity 2 65 0 791 181 0 36 chr12 46036282 46036420 -98246069 - FLAM_A SINE Alu 0 133 1 2376 84 0 0 chr12 46037142 46037441 -98245048 + AluSg SINE Alu 1 299 -11 2405 78 0 13 chr12 46037661 46037968 -98244521 + AluSg SINE Alu 1 303 -7 237 328 0 0 chr12 46038207 46038274 -98244215 - MIR SINE MIR -139 123 57 2216 115 0 3 chr12 46038881 46039177 -98243312 - AluSg SINE Alu -15 295 1 197 372 47 0 chr12 46039634 46039720 -98242769 - MIR SINE MIR -14 248 159 421 263 166 55 chr12 46040035 46040252 -98242237 + MIR SINE MIR 13 253 -9 1724 157 20 10 chr12 46040849 46041143 -98241346 + AluJo SINE Alu 3 299 -13 1974 159 0 0 chr12 46041145 46041435 -98241054 + AluJb SINE Alu 1 290 -22 325 325 50 0 chr12 46041709 46041789 -98240700 - L2 LINE L2 -48 3224 3141 354 262 0 0 chr12 46042711 46042833 -98239656 + (TG)n Simple_repeat Simple_repeat 1 122 0 300 281 77 82 chr12 46043050 46043427 -98239062 - L1M2 LINE L1 -5698 1151 777 201 121 0 0 chr12 46044116 46044149 -98238340 + (TG)n Simple_repeat Simple_repeat 1 33 0 2048 125 0 10 chr12 46044667 46044980 -98237509 - AluSg SINE Alu 0 310 1 21 0 0 0 chr12 46045047 46045068 -98237421 + AT_rich Low_complexity Low_complexity 1 21 0 200 182 0 0 chr12 46045583 46045616 -98236873 + (TG)n Simple_repeat Simple_repeat 1 33 0 197 135 27 0 chr12 46045944 46045981 -98236508 - L2 LINE L2 0 3313 3276 324 341 148 9 chr12 46046057 46046274 -98236215 + MIR SINE MIR 11 257 -5 897 295 130 28 chr12 46046391 46047139 -98235350 + L2 LINE L2 2482 3313 0 604 306 50 9 chr12 46047504 46047726 -98234763 + MIR SINE MIR 24 254 -8 338 325 159 0 chr12 46047943 46048069 -98234420 - L2 LINE L2 -6 3266 3121 326 346 108 0 chr12 46048616 46048793 -98233696 + MIR SINE MIR 9 204 -58 353 243 74 62 chr12 46049040 46049183 -98233306 + MIR SINE MIR 26 163 -45 208 275 156 28 chr12 46049885 46049994 -98232495 + MIR SINE MIR 23 145 -63 249 108 0 0 chr12 46050056 46050093 -98232396 + (CA)n Simple_repeat Simple_repeat 2 38 0 478 236 101 63 chr12 46050246 46050469 -98232020 + MIR SINE MIR 10 228 -34 1493 169 35 12 chr12 46051388 46051642 -98230847 + AluJb SINE Alu 1 260 -52 2259 121 0 0 chr12 46052513 46052818 -98229671 + AluSx SINE Alu 1 305 -7 23 33 0 0 chr12 46052852 46052882 -98229607 + AT_rich Low_complexity Low_complexity 1 30 0 2964 82 3 0 chr12 46052882 46053250 -98229239 - L1PA6 LINE L1 -5 6149 5781 414 288 197 5 chr12 46053859 46054057 -98228432 - L2 LINE L2 -4 3309 3074 248 292 104 54 chr12 46054732 46054972 -98227517 - L2 LINE L2 -1885 1429 1178 4319 65 17 41 chr12 46055152 46056219 -98226270 - MER11A LTR ERVK 0 1266 1 1104 163 74 5 chr12 46057351 46057554 -98224935 - LTR47A LTR ERVL 0 452 236 616 163 0 0 chr12 46057579 46057671 -98224818 - LTR47A LTR ERVL -358 94 3 349 346 55 37 chr12 46057681 46057993 -98224496 + L2 LINE L2 2765 3090 -182 294 29 0 0 chr12 46058195 46058230 -98224259 + (ATG)n Simple_repeat Simple_repeat 1 35 0 2221 101 3 10 chr12 46059351 46059484 -98223005 + AluSc SINE Alu 1 133 -176 2381 77 0 0 chr12 46059484 46059783 -98222706 + AluY SINE Alu 1 299 -12 2221 101 3 10 chr12 46059783 46059945 -98222544 + AluSc SINE Alu 133 294 -15 391 328 45 8 chr12 46060436 46060570 -98221919 + L2 LINE L2 3134 3272 0 2099 130 0 3 chr12 46060612 46060905 -98221584 - AluSc SINE Alu -17 292 1 2182 88 25 0 chr12 46061959 46062267 -98220222 - AluSx SINE Alu 0 315 1 876 220 173 47 chr12 46062267 46062567 -98219922 - MER46C DNA MER2_type 0 338 1 1023 76 0 0 chr12 46062586 46062717 -98219772 - AluSp/q SINE Alu -7 306 176 1154 211 101 15 chr12 46063816 46064143 -98218346 - L1ME2 LINE L1 -120 6044 5690 268 320 19 29 chr12 46065505 46065608 -98216881 - MIR SINE MIR -74 134 33 233 351 62 13 chr12 46066561 46066786 -98215703 - L2 LINE L2 -337 2977 2742 1372 71 0 6 chr12 46067357 46067539 -98214950 - L1PA7 LINE L1 -2 6152 5972 999 272 130 17 chr12 46067670 46068078 -98214411 - L2 LINE L2 -52 3261 2808 362 257 26 92 chr12 46069047 46069199 -98213290 - L2 LINE L2 0 3313 3172 770 271 90 49 chr12 46069200 46069504 -98212985 + MLT1I LTR MaLR 1 326 -83 1998 117 39 0 chr12 46069504 46069786 -98212703 - AluY SINE Alu -16 295 3 770 271 90 49 chr12 46069786 46069869 -98212620 + MLT1I LTR MaLR 326 404 -5 497 254 66 47 chr12 46069937 46070150 -98212339 - L2 LINE L2 -161 3152 2936 815 120 8 23 chr12 46070191 46070324 -98212165 + AluSg/x SINE Alu 174 304 -6 1395 106 219 4 chr12 46070344 46070581 -98211908 + AluSq SINE Alu 1 288 -25 237 33 0 0 chr12 46070591 46070621 -98211868 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 216 320 160 8 chr12 46070662 46070787 -98211702 - L2 LINE L2 -483 2831 2688 514 350 5 5 chr12 46070834 46071034 -98211455 + L1ME LINE L1 395 594 -5611 4839 104 90 43 chr12 46071043 46072525 -98209964 + pTR5 LTR ERV1 732 2435 -3 2259 132 0 0 chr12 46072749 46073059 -98209430 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr12 46073124 46073145 -98209344 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr12 46073189 46073219 -98209270 + AT_rich Low_complexity Low_complexity 1 30 0 414 277 43 3 chr12 46073240 46073439 -98209050 + L1ME LINE L1 602 985 -5357 700 250 56 4 chr12 46073442 46073674 -98208815 + L1ME LINE L1 1412 1655 -4741 1383 190 0 16 chr12 46073674 46073932 -98208557 + AluJb SINE Alu 50 303 -9 1573 248 79 88 chr12 46073932 46074148 -98208341 + L1ME LINE L1 1647 1864 -4351 2285 90 7 3 chr12 46074148 46074447 -98208042 + AluSp SINE Alu 6 305 -8 1573 248 79 88 chr12 46074447 46075432 -98207057 + L1ME LINE L1 1864 2857 -3358 183 42 0 0 chr12 46075432 46075456 -98207033 + (CA)n Simple_repeat Simple_repeat 2 25 0 1573 248 79 88 chr12 46075456 46075593 -98206896 + L1ME LINE L1 2857 2994 -3221 1879 117 7 40 chr12 46075593 46075893 -98206596 + AluSx SINE Alu 1 290 -22 1573 248 79 88 chr12 46075893 46076574 -98205915 + L1ME LINE L1 2994 3606 -2609 280 229 0 16 chr12 46076667 46076728 -98205761 - MIR SINE MIR -14 248 189 5256 81 7 77 chr12 46077082 46077592 -98204897 - L1PA11 LINE L1 -1 6173 5629 2294 93 7 0 chr12 46077592 46077893 -98204596 - AluSx SINE Alu -9 303 1 5256 81 7 77 chr12 46077893 46078121 -98204368 - L1PA11 LINE L1 -545 5629 5387 2203 111 0 0 chr12 46078121 46078419 -98204070 - AluSq SINE Alu -15 298 1 2362 97 0 3 chr12 46078428 46078736 -98203753 - AluSx SINE Alu -3 309 3 5256 81 7 77 chr12 46078736 46078900 -98203589 - L1PA11 LINE L1 -795 5379 5325 997 194 0 40 chr12 46079292 46079493 -98202996 - AluJo SINE Alu -76 236 44 182 91 30 0 chr12 46081035 46081068 -98201421 + T-rich Low_complexity Low_complexity 2 35 0 2188 108 0 32 chr12 46081633 46081947 -98200542 + AluSq SINE Alu 1 304 -9 279 0 0 0 chr12 46082555 46082586 -98199903 + (TG)n Simple_repeat Simple_repeat 1 31 0 23 0 0 0 chr12 46082740 46082763 -98199726 + AT_rich Low_complexity Low_complexity 1 23 0 278 232 54 0 chr12 46084058 46084114 -98198375 + L2 LINE L2 3211 3269 -3 355 280 58 37 chr12 46084334 46084577 -98197912 - L1ME LINE L1 -303 5818 5571 425 298 140 34 chr12 46084594 46084685 -98197804 + L1MC4a LINE L1 5573 5653 -468 2242 107 0 3 chr12 46084685 46084984 -98197505 + AluSx SINE Alu 1 298 -14 425 298 140 34 chr12 46084984 46085224 -98197265 + L1MC4a LINE L1 5653 5892 -229 354 23 0 0 chr12 46085224 46085267 -98197222 + (CA)n Simple_repeat Simple_repeat 2 44 0 425 298 140 34 chr12 46085267 46085314 -98197175 + L1MC4a LINE L1 5892 5933 -188 208 287 58 58 chr12 46087432 46087519 -98194970 + MIR SINE MIR 106 192 -70 534 176 22 131 chr12 46088712 46088841 -98193648 + Charlie5 DNA MER1_type 2426 2567 -57 2312 98 3 3 chr12 46088841 46089146 -98193343 + AluSp SINE Alu 3 307 -6 2125 74 78 0 chr12 46089146 46089429 -98193060 + AluY SINE Alu 1 305 -6 534 176 22 131 chr12 46089429 46089520 -98192969 + Charlie5 DNA MER1_type 2565 2623 -1 2048 105 0 0 chr12 46089550 46089817 -98192672 + AluSq SINE Alu 40 306 -7 186 71 0 0 chr12 46091097 46091125 -98191364 + (A)n Simple_repeat Simple_repeat 1 28 0 1977 160 10 0 chr12 46091190 46091497 -98190992 + AluJb SINE Alu 1 310 -2 22 35 0 0 chr12 46091663 46091692 -98190797 + AT_rich Low_complexity Low_complexity 1 29 0 2643 106 53 25 chr12 46092002 46092436 -98190053 + MER83 LTR ERV1 3 448 0 204 125 0 0 chr12 46092734 46092766 -98189723 + (T)n Simple_repeat Simple_repeat 1 32 0 233 285 154 0 chr12 46092826 46092956 -98189533 - L1ME4a LINE L1 -30 6091 5942 328 338 15 29 chr12 46093122 46093258 -98189231 - L2 LINE L2 -188 3084 2951 532 300 179 14 chr12 46093513 46093943 -98188546 - L2 LINE L2 -1116 2198 1698 1449 108 23 0 chr12 46093961 46094175 -98188314 - L1PA12 LINE L1 0 6168 5950 1895 154 0 3 chr12 46094186 46094484 -98188005 - AluSx SINE Alu -15 297 1 526 302 95 29 chr12 46095391 46095633 -98186856 + MIR SINE MIR 5 262 0 374 206 191 28 chr12 46095833 46095874 -98186615 - MIR SINE MIR -11 251 218 2535 65 0 7 chr12 46095874 46096184 -98186305 - AluY SINE Alu -3 308 1 374 206 191 28 chr12 46096184 46096283 -98186206 - MIR SINE MIR -44 218 88 1981 140 18 38 chr12 46096292 46096419 -98186070 - MER1B DNA MER1_type -2373 337 209 2359 103 0 0 chr12 46096419 46096719 -98185770 - AluSq SINE Alu -13 300 1 1981 140 18 38 chr12 46096719 46096933 -98185556 - MER1B DNA MER1_type -2501 209 3 656 234 86 23 chr12 46097146 46097451 -98185038 - LTR16A LTR ERVL -12 438 19 21 36 0 0 chr12 46097559 46097587 -98184902 + AT_rich Low_complexity Low_complexity 1 28 0 2391 88 3 0 chr12 46097859 46098166 -98184323 - AluSg SINE Alu -2 308 1 557 235 0 9 chr12 46098519 46098634 -98183855 - L2 LINE L2 -7 3306 3193 2407 77 20 0 chr12 46098704 46099002 -98183487 - AluY SINE Alu -7 304 1 214 262 167 48 chr12 46099258 46099342 -98183147 + L2 LINE L2 2550 2643 -671 3105 187 11 4 chr12 46099394 46099951 -98182538 - MER68 LTR ERV1 -1 561 1 1332 268 103 32 chr12 46100000 46100701 -98181788 - L2 LINE L2 -8 3305 2554 392 264 77 76 chr12 46101064 46101554 -98180935 - MLT1H1 LTR MaLR 0 555 3 2754 111 32 9 chr12 46101725 46102167 -98180322 - L1PA12 LINE L1 0 6168 5717 3203 116 2 10 chr12 46102328 46102830 -98179659 - L1PA13 LINE L1 -4 6159 5662 1370 138 12 21 chr12 46103249 46103489 -98179000 - MLT2A2 LTR ERVL -215 238 1 284 359 43 0 chr12 46103506 46103623 -98178866 - L2 LINE L2 -13 3259 3138 206 371 22 0 chr12 46103655 46103744 -98178745 + L2 LINE L2 2968 3058 -214 2216 106 0 13 chr12 46104646 46104947 -98177542 - AluSc SINE Alu -10 299 3 1755 149 3 26 chr12 46104949 46105251 -98177238 - AluSx SINE Alu -17 295 1 402 115 0 0 chr12 46105349 46105410 -98177079 + (CA)n Simple_repeat Simple_repeat 1 61 0 260 207 17 0 chr12 46105454 46105512 -98176977 + L2 LINE L2 2320 2378 -936 58 0 0 0 chr12 46105691 46105749 -98176740 + AT_rich Low_complexity Low_complexity 1 58 0 190 311 40 0 chr12 46107031 46107105 -98175384 - MIR SINE MIR -7 255 179 201 232 224 16 chr12 46107136 46107229 -98175260 + MIR SINE MIR 8 116 -92 2361 99 0 0 chr12 46107777 46108071 -98174418 + AluSg SINE Alu 1 294 -16 251 275 29 0 chr12 46108160 46108229 -98174260 + A-rich Low_complexity Low_complexity 5 75 0 559 274 82 34 chr12 46108306 46108598 -98173891 - L1ME LINE L1 -314 5807 5502 2270 109 3 3 chr12 46108639 46108950 -98173539 - AluSx SINE Alu -1 311 1 222 338 120 14 chr12 46109690 46109974 -98172515 + L3 LINE CR1 549 862 -715 900 177 6 12 chr12 46111278 46111442 -98171047 + FRAM SINE Alu 1 163 -3 22 70 0 0 chr12 46111463 46111506 -98170983 + AT_rich Low_complexity Low_complexity 1 43 0 2322 84 7 0 chr12 46111909 46112205 -98170284 + AluSp SINE Alu 1 298 -15 202 61 61 0 chr12 46112548 46112581 -98169908 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2081 140 0 0 chr12 46113233 46113526 -98168963 + AluSx SINE Alu 7 299 -13 29750 37 14 2 chr12 46113528 46119551 -98162938 + L1PA3 LINE L1 1 6150 -5 261 0 0 0 chr12 46119553 46119582 -98162907 + (TA)n Simple_repeat Simple_repeat 1 29 0 633 198 0 8 chr12 46119585 46119706 -98162783 + L2 LINE L2 3193 3312 -1 339 270 126 28 chr12 46119831 46120046 -98162443 + MARNA DNA Mariner 207 442 -144 494 195 80 18 chr12 46121592 46121705 -98160784 - L2 LINE L2 -4 3268 3149 273 188 35 12 chr12 46122845 46122930 -98159559 + GA-rich Low_complexity Low_complexity 2 88 0 24 0 0 0 chr12 46122992 46123016 -98159473 + AT_rich Low_complexity Low_complexity 1 24 0 242 261 70 9 chr12 46123431 46123546 -98158943 - L1ME4a LINE L1 -11 6110 5989 1231 177 0 35 chr12 46124263 46124495 -98157994 + AluJo SINE Alu 1 224 -88 730 287 63 5 chr12 46124536 46124759 -98157730 - MIR SINE MIR -18 244 9 214 218 26 51 chr12 46124936 46125014 -98157475 - MIR3 SINE MIR 0 208 133 3713 153 36 24 chr12 46126283 46127029 -98155460 - L1MB1 LINE L1 -1 6167 5413 1998 85 67 0 chr12 46127396 46127666 -98154823 + AluY SINE Alu 1 288 -23 1021 131 24 24 chr12 46127702 46127870 -98154619 - FRAM SINE Alu -9 167 1 518 305 7 14 chr12 46128523 46128664 -98153825 + MIR3 SINE MIR 8 147 -61 287 294 105 20 chr12 46128836 46128989 -98153500 + L2 LINE L2 3148 3313 0 243 157 0 0 chr12 46129316 46129367 -98153122 + CT-rich Low_complexity Low_complexity 2 52 0 182 79 0 79 chr12 46129982 46130020 -98152469 + (GGGAGA)n Simple_repeat Simple_repeat 1 35 0 662 278 72 14 chr12 46130675 46130884 -98151605 + MIR SINE MIR 41 261 -1 25 0 0 0 chr12 46131716 46131741 -98150748 + AT_rich Low_complexity Low_complexity 1 25 0 2169 74 3 52 chr12 46132314 46132623 -98149866 + AluY SINE Alu 1 294 -17 40 0 0 0 chr12 46132837 46132877 -98149612 + AT_rich Low_complexity Low_complexity 1 40 0 1096 266 83 18 chr12 46133653 46134037 -98148452 - MLT1I LTR MaLR 0 409 1 3057 111 7 9 chr12 46135415 46135873 -98146616 - L1PA16 LINE L1 0 6166 5710 1520 234 76 99 chr12 46136651 46136798 -98145691 + MLT1F1 LTR MaLR 1 150 -417 1732 181 20 3 chr12 46136798 46137097 -98145392 - AluJb SINE Alu -8 304 1 1520 234 76 99 chr12 46137097 46137504 -98144985 + MLT1F1 LTR MaLR 150 567 0 1895 127 7 7 chr12 46138913 46139196 -98143293 + AluSc SINE Alu 1 283 -26 309 319 98 48 chr12 46139680 46140137 -98142352 - L2 LINE L2 -1656 1658 1179 292 377 66 0 chr12 46140461 46140583 -98141906 - L2 LINE L2 -4 3268 3139 1629 159 37 9 chr12 46140621 46140947 -98141542 - LTR35 LTR ERV1 0 618 284 191 69 86 17 chr12 46140950 46141008 -98141481 + (TTATA)n Simple_repeat Simple_repeat 3 64 0 243 333 27 0 chr12 46141237 46141348 -98141141 + MLT1K LTR MaLR 366 479 -109 2286 109 3 3 chr12 46141431 46141743 -98140746 + AluSx SINE Alu 1 312 0 2251 119 18 6 chr12 46142470 46142807 -98139682 - THE1B LTR MaLR 0 364 24 2358 88 0 7 chr12 46143261 46143557 -98138932 - AluSq SINE Alu -19 294 1 526 195 24 8 chr12 46144065 46144188 -98138301 + MER94 DNA DNA 10 134 0 475 232 10 0 chr12 46144909 46145008 -98137481 + L2 LINE L2 3214 3313 0 21 0 0 0 chr12 46145069 46145090 -98137399 + AT_rich Low_complexity Low_complexity 1 21 0 2291 96 0 7 chr12 46145615 46145918 -98136571 + AluSc SINE Alu 5 305 -4 2102 119 4 0 chr12 46147547 46147857 -98134632 + AluSc SINE Alu 1 311 0 195 285 105 64 chr12 46148602 46148774 -98133715 + L2 LINE L2 1892 2070 -1244 1404 234 41 8 chr12 46148782 46149145 -98133344 + MER44D DNA MER2_type 2 431 -174 2027 124 0 13 chr12 46149145 46149459 -98133030 - AluSx SINE Alu -2 310 1 186 71 0 0 chr12 46150215 46150243 -98132246 + (T)n Simple_repeat Simple_repeat 1 28 0 364 266 32 0 chr12 46150409 46150503 -98131986 - MIR SINE MIR -60 202 106 1856 185 3 7 chr12 46150889 46151197 -98131292 + AluJo SINE Alu 1 307 -5 2198 72 0 0 chr12 46152143 46152406 -98130083 - AluY SINE Alu -12 299 37 568 277 71 49 chr12 46152548 46152815 -98129674 + L1MEd LINE L1 18 290 -5829 3992 158 30 6 chr12 46152897 46153605 -98128884 - MER50 LTR ERV1 -9 725 1 1859 99 166 84 chr12 46153983 46154387 -98128102 - LTR23 LTR ERV1 0 437 1 1004 108 38 0 chr12 46154405 46154562 -98127927 + MER50 LTR ERV1 100 262 -472 23824 154 22 19 chr12 46154695 46155916 -98126573 + L1PA10 LINE L1 10 1225 -5258 201 74 0 0 chr12 46155916 46155943 -98126546 + (CAA)n Simple_repeat Simple_repeat 1 27 0 23824 154 22 19 chr12 46155943 46161153 -98121336 + L1PA10 LINE L1 1225 6473 -10 2360 42 0 3 chr12 46162629 46162945 -98119544 - AluY SINE Alu 0 315 1 30 27 0 0 chr12 46163872 46163909 -98118580 + AT_rich Low_complexity Low_complexity 1 37 0 266 342 32 25 chr12 46164571 46164729 -98117760 - MER117 DNA MER1_type -34 163 5 548 172 8 25 chr12 46164886 46165008 -98117481 - L1PB4 LINE L1 0 6156 6037 226 218 23 23 chr12 46165941 46166028 -98116461 + L1ME LINE L1 5347 5433 -688 1821 166 5 29 chr12 46166307 46166681 -98115808 - MLT1B LTR MaLR -19 371 7 824 262 73 34 chr12 46166721 46167303 -98115186 + L1MEd LINE L1 895 1556 -4754 319 290 50 10 chr12 46167320 46167420 -98115069 + L1ME4a LINE L1 5985 6088 -33 393 22 0 0 chr12 46169251 46169297 -98113192 + (TTG)n Simple_repeat Simple_repeat 2 47 0 2072 122 0 0 chr12 46169297 46169576 -98112913 - AluSx SINE Alu -33 279 1 267 205 418 16 chr12 46169846 46169968 -98112521 + MIR SINE MIR 75 245 -17 420 20 0 0 chr12 46170065 46170114 -98112375 + (CA)n Simple_repeat Simple_repeat 1 49 0 271 253 11 58 chr12 46170227 46170314 -98112175 - MIR SINE MIR -149 113 31 239 330 0 22 chr12 46170337 46170428 -98112061 + MIR SINE MIR 122 210 -52 381 319 217 6 chr12 46170692 46171005 -98111484 + L3 LINE CR1 683 1061 -516 1613 188 56 12 chr12 46171008 46171476 -98111013 - LTR22 LTR ERVK 0 458 1 18849 92 12 4 chr12 46171476 46174306 -98108183 - HERVK22 LTR ERVK 0 6837 2665 4660 21 9 0 chr12 46174456 46175031 -98107458 - L1PA3 LINE L1 -47 6108 5529 494 296 104 19 chr12 46175034 46175304 -98107185 - L1MEc LINE L1 -4180 2216 1924 500 198 9 9 chr12 46175324 46175440 -98107049 - L1MA10 LINE L1 -8 6326 6211 368 345 41 72 chr12 46175990 46176433 -98106056 - L1MEc LINE L1 -5552 653 225 * 393 290 113 16 chr12 46176428 46176614 -98105875 - L1MEc LINE L1 -4758 1638 1435 2370 251 52 7 chr12 46176623 46177369 -98105120 + L1MEc LINE L1 196 975 -5421 297 333 34 10 chr12 46177404 46177611 -98104878 - L1MEc LINE L1 -5302 903 692 37 23 0 0 chr12 46178060 46178104 -98104385 + AT_rich Low_complexity Low_complexity 1 44 0 294 365 0 9 chr12 46178368 46178475 -98104014 + MIR3 SINE MIR 58 163 -45 1914 215 53 34 chr12 46181466 46181992 -98100497 - MLT1F LTR MaLR -6 536 1 21 0 0 0 chr12 46181998 46182019 -98100470 + AT_rich Low_complexity Low_complexity 1 21 0 287 296 34 34 chr12 46183259 46183465 -98099024 - L1MDa LINE L1 -2549 3991 3786 667 264 89 62 chr12 46183491 46184592 -98097897 - L1MDa LINE L1 -2846 3694 2564 350 274 31 76 chr12 46184603 46184826 -98097663 - L1MDa LINE L1 -4007 2533 2321 30 0 0 0 chr12 46184983 46185013 -98097476 + AT_rich Low_complexity Low_complexity 1 30 0 1957 161 5 21 chr12 46185830 46186216 -98096273 - L1MA6 LINE L1 -4 6296 5917 939 321 68 24 chr12 46186331 46186714 -98095775 - L3 LINE CR1 -11 1566 1167 1742 185 51 12 chr12 46186819 46187289 -98095200 + LTR22 LTR ERVK 1 458 0 5018 119 8 9 chr12 46187289 46188076 -98094413 + HERVK22 LTR ERVK 1 786 -6051 1519 228 31 22 chr12 46188069 46188612 -98093877 + HERVK22 LTR ERVK 2314 2861 -3976 * 4326 84 12 65 chr12 46189052 46189775 -98092714 + HUERS-P3b LTR ERV1 3057 3741 -3677 248 231 0 0 chr12 46189775 46189827 -98092662 + LTR30 LTR ERV1 1 52 -670 1409 141 18 49 chr12 46189827 46190170 -98092319 + LTR12 LTR ERV1 55 2032 -406 310 233 11 0 chr12 46190170 46190260 -98092229 + LTR30 LTR ERV1 552 642 -80 712 100 0 0 chr12 46190263 46190363 -98092126 + LTR12 LTR ERV1 615 714 0 2019 100 55 7 chr12 46190363 46190672 -98091817 + HUERS-P1 LTR ERV1 2592 2915 -3348 1601 134 4 0 chr12 46190672 46190926 -98091563 + L1MB1 LINE L1 5912 6166 -2 365 367 55 37 chr12 46190953 46191280 -98091209 - L2 LINE L2 -122 3150 2818 1864 183 0 0 chr12 46191934 46192240 -98090249 - AluJb SINE Alu -4 308 3 388 288 96 79 chr12 46193086 46193241 -98089248 - MIR SINE MIR -10 252 90 1799 145 60 0 chr12 46193241 46193523 -98088966 + AluSc SINE Alu 1 299 -10 388 288 96 79 chr12 46193523 46193596 -98088893 - MIR SINE MIR -172 90 20 1036 101 13 0 chr12 46193784 46193933 -98088556 - L1PB1 LINE L1 -2 6149 5999 330 270 61 14 chr12 46194343 46194491 -98087998 - L1ME4a LINE L1 -8 6113 5959 1281 149 37 9 chr12 46195694 46195909 -98086580 - AluJb SINE Alu -5 307 87 801 191 33 49 chr12 46196553 46196736 -98085753 + AluJb SINE Alu 107 286 -26 321 353 53 32 chr12 46196790 46196839 -98085650 - L2 LINE L2 -556 2758 2712 1671 126 0 48 chr12 46196839 46197108 -98085381 - AluJb SINE Alu -19 293 38 321 353 53 32 chr12 46197108 46197248 -98085241 - L2 LINE L2 -602 2712 2565 219 125 0 0 chr12 46197273 46197313 -98085176 + (TC)n Simple_repeat Simple_repeat 1 40 0 433 212 199 33 chr12 46197328 46197479 -98085010 - MIR SINE MIR 0 262 87 421 32 32 16 chr12 46197522 46197585 -98084904 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 384 378 7 7 chr12 46197647 46197790 -98084699 + L3 LINE CR1 1434 1576 -1 377 299 76 5 chr12 46198982 46199179 -98083310 + Charlie2 DNA MER1_type 1 211 -2571 229 291 38 19 chr12 46199320 46199478 -98083011 + Charlie2 DNA MER1_type 1923 2083 -779 431 233 35 0 chr12 46200203 46200319 -98082170 + MLT1H1 LTR MaLR 419 538 -17 225 349 0 0 chr12 46200505 46200548 -98081941 + C-rich Low_complexity Low_complexity 1 43 0 407 250 11 28 chr12 46200548 46200728 -98081761 + CT-rich Low_complexity Low_complexity 1 177 0 188 312 11 0 chr12 46200707 46200800 -98081689 + C-rich Low_complexity Low_complexity 5 98 0 * 235 333 176 9 chr12 46201417 46201525 -98080964 - MIR SINE MIR -125 137 12 504 252 12 79 chr12 46202111 46202277 -98080212 - MIR SINE MIR -60 148 1 849 216 25 4 chr12 46202610 46202846 -98079643 - L1MEc LINE L1 -3962 2434 2194 905 248 108 13 chr12 46202858 46203477 -98079012 + L1ME4a LINE L1 4967 5641 -521 333 248 104 8 chr12 46203481 46203606 -98078883 + L1ME3A LINE L1 6029 6165 -5 966 246 145 16 chr12 46203615 46203792 -98078697 - Charlie2 DNA MER1_type -423 2439 2286 1568 153 10 49 chr12 46203792 46204099 -98078390 - AluJb SINE Alu -17 295 1 966 246 145 16 chr12 46204099 46204418 -98078071 - Charlie2 DNA MER1_type -576 2286 1879 466 270 157 4 chr12 46204440 46204714 -98077775 - Charlie2 DNA MER1_type -2546 316 1 588 255 50 0 chr12 46205670 46205811 -98076678 + MER5A DNA MER1_type 2 149 -40 385 256 83 8 chr12 46209353 46209474 -98073015 - MIR SINE MIR -10 252 123 2242 131 8 32 chr12 46209992 46210365 -98072124 + THE1B LTR MaLR 1 364 0 268 328 15 0 chr12 46211058 46211125 -98071364 - L2 LINE L2 -20 3252 3185 2333 151 62 36 chr12 46211278 46211827 -98070662 - L1MCa LINE L1 -4181 2245 1590 451 222 11 0 chr12 46211832 46211922 -98070567 - Tigger7 DNA MER2_type 0 2487 2397 2473 105 5 27 chr12 46211922 46212292 -98070197 + THE1B LTR MaLR 1 362 -2 228 255 20 0 chr12 46212740 46212791 -98069698 - L2 LINE L2 -36 3236 3185 23074 22 1 1 chr12 46215048 46218337 -98064152 - L1P1 LINE L1 -673 5482 2193 991 221 77 18 chr12 46218422 46218694 -98063795 + L1MA9 LINE L1 6001 6288 -24 310 241 161 6 chr12 46218853 46219015 -98063474 + L1ME4a LINE L1 5687 5873 -248 2165 116 3 3 chr12 46219189 46219492 -98062997 - AluSx SINE Alu -9 303 1 2046 134 0 6 chr12 46219530 46219844 -98062645 - AluSq SINE Alu 0 313 2 3196 150 75 11 chr12 46221278 46221947 -98060542 - L1MDa LINE L1 -4045 2381 1706 1998 217 46 48 chr12 46221952 46222042 -98060447 - MER44D DNA MER2_type -1882 605 516 1796 147 75 26 chr12 46222042 46222389 -98060100 + THE1B LTR MaLR 1 364 0 1998 217 46 48 chr12 46222389 46222841 -98059648 - MER44D DNA MER2_type -1971 516 9 7429 171 40 35 chr12 46222847 46223753 -98058736 - L1MDa LINE L1 -4841 1585 668 1743 155 9 29 chr12 46223753 46224069 -98058420 - AluJb SINE Alu 0 312 3 7429 171 40 35 chr12 46224069 46224720 -98057769 - L1MDa LINE L1 -5758 668 21 468 167 71 0 chr12 46225203 46225287 -98057202 - MER5A DNA MER1_type -99 90 1 225 261 246 23 chr12 46227550 46227680 -98054809 - MER5A DNA MER1_type -15 174 16 225 154 0 0 chr12 46228051 46228090 -98054399 + T-rich Low_complexity Low_complexity 1 39 0 2107 113 55 0 chr12 46229453 46229746 -98052743 - AluSc SINE Alu 0 309 1 199 425 25 8 chr12 46230136 46230256 -98052233 - MIR3 SINE MIR -72 136 15 219 211 0 0 chr12 46230267 46230305 -98052184 + polypyrimidine Low_complexity Low_complexity 3 40 0 23 0 0 0 chr12 46230818 46230841 -98051648 + AT_rich Low_complexity Low_complexity 1 23 0 2121 97 7 13 chr12 46231863 46232173 -98050316 - L1PA14 LINE L1 -14 6147 5840 1636 204 78 52 chr12 46232180 46232704 -98049785 + LTR55 LTR ERV 1 538 -10 350 254 218 0 chr12 46232905 46233015 -98049474 + MIR SINE MIR 28 161 -101 262 321 24 0 chr12 46233149 46233233 -98049256 + MIR SINE MIR 106 191 -71 5283 22 0 0 chr12 46233848 46234504 -98047985 - L1PA4 LINE L1 -280 5875 5220 1372 73 29 10 chr12 46234509 46234715 -98047774 + L1PA4 LINE L1 5944 6153 -2 353 206 10 0 chr12 46235288 46235390 -98047099 + GA-rich Low_complexity Low_complexity 3 105 0 243 327 0 0 chr12 46235532 46235633 -98046856 + L1MC4 LINE L1 6602 6702 -1340 410 281 62 0 chr12 46235794 46235924 -98046565 + MIR SINE MIR 75 211 -51 314 322 77 38 chr12 46237105 46237366 -98045123 + L2 LINE L2 2922 3192 -121 1008 253 154 49 chr12 46237444 46237827 -98044662 - L1MC4 LINE L1 -2 8040 7699 862 9 45 0 chr12 46237827 46237939 -98044550 + (TTTTA)n Simple_repeat Simple_repeat 1 117 0 1866 141 44 0 chr12 46237943 46238213 -98044276 - AluSx SINE Alu -30 282 1 1008 253 154 49 chr12 46238213 46238413 -98044076 - L1MC4 LINE L1 -345 7697 7390 2213 71 43 0 chr12 46238663 46238943 -98043546 + AluY SINE Alu 1 292 -19 4073 86 16 0 chr12 46239073 46239618 -98042871 + MER41A LTR ERV1 1 554 0 3460 127 36 91 chr12 46239704 46240365 -98042124 + MER41A-int LTR ERV1 1 625 -5321 * 6370 96 33 30 chr12 46240352 46241387 -98041102 + MER41A-int LTR ERV1 1081 2112 -2903 746 119 103 0 chr12 46241387 46241513 -98040976 - MER85 DNA T2_type 0 139 1 6370 96 33 30 chr12 46241513 46242160 -98040329 + MER41A-int LTR ERV1 2112 3611 -1404 2839 73 11 3 chr12 46242295 46242665 -98039824 - THE1C LTR MaLR -2 373 1 1598 189 14 59 chr12 46242738 46243092 -98039397 + MER58B DNA MER1_type 4 341 0 37 23 0 0 chr12 46244140 46244184 -98038305 + AT_rich Low_complexity Low_complexity 1 44 0 228 200 0 0 chr12 46245021 46245071 -98037418 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 899 236 48 128 chr12 46245126 46245538 -98036951 - L1ME3A LINE L1 -315 5855 5508 1781 166 0 22 chr12 46245538 46245852 -98036637 - AluJb SINE Alu -5 307 1 899 236 48 128 chr12 46245852 46246063 -98036426 - L1ME3A LINE L1 -662 5508 5282 26 50 0 0 chr12 46246582 46246622 -98035867 + AT_rich Low_complexity Low_complexity 1 40 0 181 213 410 0 chr12 46247131 46247192 -98035297 + MIR SINE MIR 167 252 -10 258 204 136 34 chr12 46247385 46247473 -98035016 + L2 LINE L2 3212 3308 -5 2105 110 3 13 chr12 46248363 46248663 -98033826 - AluSc SINE Alu -12 297 1 228 83 124 41 chr12 46249080 46249201 -98033288 + (TATAA)n Simple_repeat Simple_repeat 1 131 0 402 21 0 0 chr12 46249577 46249624 -98032865 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1523 198 0 14 chr12 46249625 46249913 -98032576 - AluJb SINE Alu -28 284 1 410 152 0 0 chr12 46250067 46250133 -98032356 - Charlie1 DNA MER1_type -1 2760 2695 * 909 242 48 8 chr12 46250125 46250373 -98032116 - Charlie1 DNA MER1_type -2503 258 1 691 201 82 0 chr12 46251902 46252061 -98030428 - MER58B DNA MER1_type -1 340 169 850 193 96 0 chr12 46252327 46252514 -98029975 - L1PA16 LINE L1 -3 6163 5959 1987 129 0 11 chr12 46252547 46252888 -98029601 - AluSx SINE Alu 0 338 1 201 39 0 0 chr12 46252988 46253014 -98029475 + (T)n Simple_repeat Simple_repeat 1 26 0 2417 69 69 6 chr12 46253167 46253499 -98028990 - THE1A LTR MaLR -2 353 1 184 289 0 0 chr12 46256991 46257029 -98025460 - L2 LINE L2 -25 3247 3210 11371 31 4 1 chr12 46257908 46260035 -98022454 + L1PA4 LINE L1 4033 6167 0 407 220 128 28 chr12 46260304 46260413 -98022076 - L2 LINE L2 0 3272 3153 29 0 0 0 chr12 46261403 46261432 -98021057 + AT_rich Low_complexity Low_complexity 1 29 0 1701 180 47 12 chr12 46263031 46263353 -98019136 - MLT1A1 LTR MaLR 0 365 33 540 311 145 15 chr12 46264173 46264504 -98017985 + L3b LINE CR1 1112 1485 -98 323 311 8 8 chr12 46264591 46264723 -98017766 + CT-rich Low_complexity Low_complexity 1 132 0 2905 72 5 3 chr12 46264887 46265261 -98017228 + THE1C LTR MaLR 1 375 0 205 293 0 17 chr12 46266417 46266475 -98016014 + CT-rich Low_complexity Low_complexity 4 60 0 242 267 69 69 chr12 46266582 46266698 -98015791 - MIR SINE MIR -10 252 137 7925 175 63 16 chr12 46266707 46268400 -98014089 - L1MCa LINE L1 -4595 2012 48 22 0 0 0 chr12 46268438 46268460 -98014029 + AT_rich Low_complexity Low_complexity 1 22 0 180 264 42 69 chr12 46268460 46268510 -98013979 - MIR SINE MIR -111 151 82 591 161 21 6 chr12 46268653 46268818 -98013671 + L1MA7 LINE L1 6011 6291 0 548 312 55 21 chr12 46269212 46269449 -98013040 - MIR SINE MIR 0 262 18 29 0 0 0 chr12 46270327 46270356 -98012133 + AT_rich Low_complexity Low_complexity 1 29 0 9770 113 23 0 chr12 46270561 46272094 -98010395 + MER41A-int LTR ERV1 4377 5944 -2 3870 105 9 9 chr12 46272094 46272647 -98009842 + MER41A LTR ERV1 1 553 -1 295 242 222 0 chr12 46272707 46272806 -98009683 - MIR3 SINE MIR -5 203 83 395 197 88 36 chr12 46273379 46273516 -98008973 + L1MEd LINE L1 42 185 -5934 1003 218 53 35 chr12 46273939 46274168 -98008321 + MLT2B1 LTR ERVL 13 236 -284 180 0 0 0 chr12 46274168 46274188 -98008301 + (CATCT)n Simple_repeat Simple_repeat 1 20 0 1003 218 53 35 chr12 46274188 46274411 -98008078 + MLT2B1 LTR ERVL 236 520 0 200 267 22 0 chr12 46274460 46274505 -98007984 + MIR3 SINE MIR 117 162 -46 319 294 140 7 chr12 46274534 46274670 -98007819 - L2 LINE L2 0 3313 3160 667 292 111 17 chr12 46275692 46276161 -98006328 - L1ME3A LINE L1 -281 5872 5338 7230 164 106 87 chr12 46276161 46277883 -98004606 + MER52A LTR ERV1 1 1755 0 667 292 111 17 chr12 46277883 46277991 -98004498 - L1ME3A LINE L1 -815 5338 5241 301 165 158 101 chr12 46278041 46278199 -98004290 - L1MC5 LINE L1 -53 7908 7742 365 254 61 6 chr12 46278199 46278380 -98004109 - L1ME3A LINE L1 -934 5195 5005 28 91 0 0 chr12 46278530 46278607 -98003882 + AT_rich Low_complexity Low_complexity 1 77 0 324 239 116 0 chr12 46278613 46278751 -98003738 - L1ME3A LINE L1 -1427 4702 4549 238 189 38 38 chr12 46279071 46279124 -98003365 + L2 LINE L2 3255 3307 -6 1059 206 19 25 chr12 46279177 46279561 -98002928 + MER63B DNA MER1_type 3 434 0 516 306 70 23 chr12 46279639 46280067 -98002422 - L1ME3A LINE L1 -1809 4320 3873 333 309 55 25 chr12 46280192 46280278 -98002211 + L1M4 LINE L1 2596 2678 -3468 1762 41 5 0 chr12 46280278 46280497 -98001992 - L1PA4 LINE L1 0 6155 5936 333 309 55 25 chr12 46280497 46280611 -98001878 + L1M4 LINE L1 2678 2802 -3344 683 191 54 7 chr12 46280658 46280805 -98001684 - L1PA15 LINE L1 -4 6161 6008 1934 188 243 7 chr12 46280807 46281350 -98001139 + L1P LINE L1 3643 4313 -1833 386 277 42 8 chr12 46281356 46281475 -98001014 - L1ME3A LINE L1 -5100 1019 897 31 58 0 0 chr12 46281505 46281557 -98000932 + AT_rich Low_complexity Low_complexity 1 52 0 2965 72 70 5 chr12 46281567 46281944 -98000545 + MLT2A1 LTR ERVL 1 409 -35 306 0 0 0 chr12 46281944 46281978 -98000511 + (CA)n Simple_repeat Simple_repeat 2 35 0 2965 72 70 5 chr12 46281978 46282015 -98000474 + MLT2A1 LTR ERVL 409 442 -2 9948 74 27 1 chr12 46282017 46283389 -97999100 + HERVL-A1 LTR ERVL 1 1407 -4247 * 17912 72 11 25 chr12 46283376 46284730 -97997759 + HERVL-A1 LTR ERVL 3162 4466 -1188 2003 109 0 4 chr12 46284730 46285005 -97997484 + AluSg SINE Alu 1 274 -36 17912 72 11 25 chr12 46285005 46286178 -97996311 + HERVL-A1 LTR ERVL 4466 5654 0 692 105 0 0 chr12 46286178 46286283 -97996206 + MLT2A1 LTR ERVL 1 105 -339 261 148 0 19 chr12 46286302 46286356 -97996133 + MLT2A1 LTR ERVL 392 444 0 550 292 83 13 chr12 46286357 46286658 -97995831 - L1ME3A LINE L1 -5300 819 498 332 324 43 72 chr12 46286664 46286871 -97995618 - L1ME3A LINE L1 -5671 448 248 1317 262 65 29 chr12 46286891 46287707 -97994782 - L1M4 LINE L1 -2339 3807 2963 3777 73 0 23 chr12 46288214 46288734 -97993755 + L1PA8A LINE L1 5624 6131 0 2178 119 0 0 chr12 46289351 46289645 -97992844 - AluSx SINE Alu -18 294 1 201 121 0 0 chr12 46290470 46290503 -97991986 + (TAA)n Simple_repeat Simple_repeat 3 35 0 513 300 32 32 chr12 46291099 46291289 -97991200 + MIR SINE MIR 19 208 -54 1555 263 58 64 chr12 46292224 46292961 -97989528 - MER21B LTR ERV1 -124 739 7 1357 77 0 11 chr12 46293908 46294091 -97988398 - L1PA5 LINE L1 0 6154 5974 898 263 25 13 chr12 46294677 46294913 -97987576 + MIR SINE MIR 13 251 -11 340 300 199 8 chr12 46294954 46295221 -97987268 - L1MC4a LINE L1 -1899 5909 5592 658 207 140 13 chr12 46295258 46295408 -97987081 - FRAM SINE Alu -4 172 4 210 91 0 0 chr12 46295917 46295950 -97986539 + (TC)n Simple_repeat Simple_repeat 2 34 0 379 154 15 0 chr12 46295999 46296064 -97986425 - MIR SINE MIR -89 173 108 479 235 117 25 chr12 46296399 46296595 -97985894 - L2 LINE L2 -2 3311 3098 203 343 48 19 chr12 46296887 46296992 -97985497 + MIR SINE MIR 44 151 -111 1847 148 26 47 chr12 46298062 46298406 -97984083 - MER1B DNA MER1_type 0 337 1 189 264 176 22 chr12 46299270 46299361 -97983128 + MIR SINE MIR 148 252 -10 219 396 18 18 chr12 46299499 46299663 -97982826 - L2 LINE L2 -224 3048 2885 317 284 39 0 chr12 46300146 46300248 -97982241 - MIR SINE MIR -38 224 119 2234 34 0 0 chr12 46302638 46302905 -97979584 - L1PA5 LINE L1 0 6154 5888 906 207 69 19 chr12 46303924 46304185 -97978304 + L1MA9 LINE L1 6001 6274 -38 2116 95 20 30 chr12 46304273 46304578 -97977911 + AluSx SINE Alu 1 302 -10 297 273 16 83 chr12 46304588 46304709 -97977780 + L2 LINE L2 3192 3304 -9 1927 137 126 0 chr12 46305083 46305441 -97977048 - MER57A LTR ERV1 0 403 1 14977 113 17 24 chr12 46305647 46308070 -97974419 - Tigger1 DNA MER2_type -12 2406 1 961 296 29 13 chr12 46308484 46308888 -97973601 - L2 LINE L2 -222 3091 2679 1821 163 0 27 chr12 46309062 46309362 -97973127 - AluJb SINE Alu -20 292 1 419 266 22 7 chr12 46309362 46309500 -97972989 - MLT1L LTR MaLR -157 458 237 349 233 117 19 chr12 46309791 46309894 -97972595 - MIR SINE MIR -62 146 34 280 216 29 69 chr12 46310639 46310741 -97971748 - MIR SINE MIR -54 208 111 421 364 22 11 chr12 46310982 46311166 -97971323 - MER5A DNA MER1_type -3 186 1 194 316 18 0 chr12 46311867 46311924 -97970565 - L2 LINE L2 -1 3312 3255 2281 102 0 13 chr12 46311981 46312286 -97970203 + AluSc SINE Alu 1 301 -8 262 293 135 72 chr12 46312447 46312669 -97969820 + MIR SINE MIR 21 256 -6 526 263 0 8 chr12 46313379 46313512 -97968977 + MER94 DNA DNA 2 133 -1 24 53 0 0 chr12 46313646 46313684 -97968805 + AT_rich Low_complexity Low_complexity 1 38 0 202 316 18 0 chr12 46313727 46313784 -97968705 - MIR SINE MIR -140 122 65 230 0 33 0 chr12 46314369 46314399 -97968090 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 37805 29 28 1 chr12 46314399 46320413 -97962076 - L1HS LINE L1 -16 6139 1 25 31 0 0 chr12 46320418 46320450 -97962039 + AT_rich Low_complexity Low_complexity 1 32 0 200 269 10 87 chr12 46320745 46320849 -97961640 + MIR SINE MIR 70 165 -97 514 331 22 0 chr12 46321236 46321414 -97961075 - MER117 DNA MER1_type 0 197 16 1787 54 0 0 chr12 46321414 46321636 -97960853 + L1PA5 LINE L1 5920 6141 -13 287 326 76 111 chr12 46322047 46323509 -97958980 + L2 LINE L2 1645 3053 -219 255 348 18 55 chr12 46324534 46324698 -97957791 - L2 LINE L2 -189 3083 2926 545 301 17 23 chr12 46325870 46326043 -97956446 + MER5B DNA MER1_type 1 172 -6 2177 112 45 31 chr12 46327087 46327444 -97955045 - THE1B LTR MaLR -2 362 1 1934 155 32 27 chr12 46327499 46327873 -97954616 + Tigger2a DNA MER2_type 3 378 -56 2373 127 10 20 chr12 46327874 46328214 -97954275 - L1PA15 LINE L1 0 6165 5828 2334 104 3 0 chr12 46328214 46328522 -97953967 - AluY SINE Alu -2 309 1 2373 127 10 20 chr12 46328522 46328582 -97953907 - L1PA15 LINE L1 -337 5828 5769 * 14322 140 16 22 chr12 46328579 46331293 -97951196 - L1PA11 LINE L1 -1 6173 3463 2406 51 0 10 chr12 46331293 46331587 -97950902 - AluY SINE Alu -20 291 1 14322 140 16 22 chr12 46331587 46332322 -97950167 - L1PA11 LINE L1 -2711 3463 2726 651 129 0 8 chr12 46332328 46332432 -97950057 - L1ME LINE L1 -348 5773 5676 1537 182 64 72 chr12 46333452 46333575 -97948914 + MLT2C1 LTR ERVL 10 132 -265 2085 130 3 0 chr12 46333575 46333868 -97948621 + AluSp SINE Alu 1 294 -19 1537 182 64 72 chr12 46333868 46334085 -97948404 + MLT2C1 LTR ERVL 132 349 -48 219 69 0 0 chr12 46334085 46334114 -97948375 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 1537 182 64 72 chr12 46334114 46334162 -97948327 + MLT2C1 LTR ERVL 349 396 -1 208 218 10 79 chr12 46334403 46334504 -97947985 + CT-rich Low_complexity Low_complexity 3 96 0 440 225 11 0 chr12 46334620 46334709 -97947780 + L2 LINE L2 3224 3313 0 379 265 107 36 chr12 46336636 46336832 -97945657 - L1ME3 LINE L1 -197 5965 5756 * 1684 273 110 29 chr12 46336828 46338050 -97944439 - L1ME3 LINE L1 -2616 3530 2210 348 295 92 12 chr12 46338091 46338264 -97944225 - HAL1 LINE L1 -1554 953 767 372 338 108 65 chr12 46338498 46338963 -97943526 - HAL1 LINE L1 -2012 495 11 1074 163 28 28 chr12 46340393 46340608 -97941881 - AluJb SINE Alu -11 301 87 187 229 21 21 chr12 46341548 46341596 -97940893 + L2 LINE L2 3266 3313 0 196 157 59 0 chr12 46341810 46341861 -97940628 + GA-rich Low_complexity Low_complexity 2 55 0 2151 128 33 22 chr12 46343709 46344069 -97938420 - THE1B LTR MaLR 0 364 1 277 382 71 4 chr12 46344144 46344369 -97938120 - MIR SINE MIR -14 248 9 23 54 0 0 chr12 46346609 46346646 -97935843 + AT_rich Low_complexity Low_complexity 1 37 0 1191 116 0 0 chr12 46347448 46347620 -97934869 - L1PA13 LINE L1 -19 6144 5973 418 347 59 13 chr12 46348218 46348457 -97934032 + MIR SINE MIR 9 258 -4 219 267 117 75 chr12 46348939 46349059 -97933430 + MIR SINE MIR 67 191 -71 212 100 25 0 chr12 46350046 46350086 -97932403 + (TCTA)n Simple_repeat Simple_repeat 1 41 0 2703 26 0 0 chr12 46351077 46351381 -97931108 + AluY SINE Alu 1 304 -7 192 321 49 56 chr12 46351551 46351713 -97930776 + MIR SINE MIR 33 193 -69 22 0 0 0 chr12 46352221 46352243 -97930246 + AT_rich Low_complexity Low_complexity 1 22 0 234 276 323 0 chr12 46352569 46352696 -97929793 + MIR3 SINE MIR 30 197 -11 2331 98 13 0 chr12 46353855 46354162 -97928327 + AluSx SINE Alu 1 311 -1 416 323 0 15 chr12 46354883 46355016 -97927473 + L2 LINE L2 3183 3313 0 28 48 0 0 chr12 46355659 46355701 -97926788 + AT_rich Low_complexity Low_complexity 1 42 0 557 255 14 60 chr12 46356411 46356627 -97925862 - LTR16A1 LTR ERVL -1 456 251 1607 43 5 24 chr12 46357555 46357766 -97924723 - L1PA4 LINE L1 0 6155 5949 309 68 115 7 chr12 46358041 46358189 -97924300 + (TA)n Simple_repeat Simple_repeat 1 164 0 462 113 63 5 chr12 46358207 46358432 -97924057 + (TA)n Simple_repeat Simple_repeat 1 238 0 24 53 0 0 chr12 46358563 46358601 -97923888 + AT_rich Low_complexity Low_complexity 1 38 0 203 316 18 0 chr12 46358644 46358701 -97923788 - MIR SINE MIR -140 122 65 521 248 13 65 chr12 46359333 46359440 -97923049 + MIR SINE MIR 10 108 -154 835 250 11 0 chr12 46359440 46359616 -97922873 + MER45A DNA AcHobo 1 178 0 521 248 13 65 chr12 46359616 46359661 -97922828 + MIR SINE MIR 108 154 -108 7028 50 1 5 chr12 46362800 46363673 -97918816 - L1PA7 LINE L1 0 6154 5285 1921 146 7 7 chr12 46363825 46364127 -97918362 + AluSx SINE Alu 1 302 -10 26 30 0 0 chr12 46365125 46365158 -97917331 + AT_rich Low_complexity Low_complexity 1 33 0 432 296 90 14 chr12 46365896 46366119 -97916370 + L2 LINE L2 2733 2972 -342 600 289 72 14 chr12 46366126 46366334 -97916155 + L2 LINE L2 3094 3313 0 3819 195 19 12 chr12 46366901 46367702 -97914787 + L1MC1 LINE L1 5528 6333 0 352 204 31 10 chr12 46367702 46367800 -97914689 + L1M4 LINE L1 1792 1891 -4493 357 24 0 0 chr12 46367802 46367844 -97914645 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 1414 204 108 8 chr12 46367848 46368296 -97914193 + L1M4 LINE L1 2033 2565 -3884 440 265 25 6 chr12 46368297 46368459 -97914030 + L1M4 LINE L1 5254 5418 -964 465 78 0 0 chr12 46368468 46368532 -97913957 + Alu SINE Alu 1 64 -246 506 130 35 19 chr12 46368632 46368890 -97913599 + (TA)n Simple_repeat Simple_repeat 1 262 0 30 45 0 0 chr12 46368890 46368934 -97913555 + AT_rich Low_complexity Low_complexity 1 44 0 485 133 31 25 chr12 46368934 46369293 -97913196 + (TA)n Simple_repeat Simple_repeat 1 361 0 466 235 14 113 chr12 46369559 46369772 -97912717 - MIR SINE MIR -69 193 2 21 36 0 0 chr12 46371233 46371261 -97911228 + AT_rich Low_complexity Low_complexity 1 28 0 712 256 106 7 chr12 46371340 46371641 -97910848 + MER114 LTR ERV 1 331 -317 666 257 26 0 chr12 46372878 46373030 -97909459 - MER5B DNA MER1_type -3 175 20 23 33 0 0 chr12 46376272 46376302 -97906187 + AT_rich Low_complexity Low_complexity 1 30 0 228 182 0 0 chr12 46376707 46376751 -97905738 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 1684 190 7 0 chr12 46376969 46377259 -97905230 + AluJo SINE Alu 3 294 -18 411 271 146 0 chr12 46377352 46377496 -97904993 - MIR SINE MIR -29 233 69 231 271 53 28 chr12 46377761 46377833 -97904656 + MIR SINE MIR 49 144 -64 319 217 12 36 chr12 46378082 46378165 -97904324 + MIR SINE MIR 182 262 0 180 0 0 0 chr12 46378246 46378266 -97904223 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 214 358 135 0 chr12 46378362 46378510 -97903979 - L2 LINE L2 -954 2360 2193 22 56 0 0 chr12 46379280 46379316 -97903173 + AT_rich Low_complexity Low_complexity 1 36 0 2270 82 9 0 chr12 46380664 46380981 -97901508 - L1PB2 LINE L1 -4 6147 5828 2243 107 23 41 chr12 46381230 46381623 -97900866 - L1MA4 LINE L1 -5 6295 5910 4280 190 18 19 chr12 46381628 46382764 -97899725 + L1M2 LINE L1 2647 3785 -3063 257 300 147 63 chr12 46383796 46383832 -97898657 + MIR3 SINE MIR 1 33 -229 2255 78 3 3 chr12 46383832 46384125 -97898364 + AluY SINE Alu 1 293 -18 257 300 147 63 chr12 46384125 46384338 -97898151 + MIR3 SINE MIR 33 259 -3 2388 80 3 0 chr12 46384420 46384720 -97897769 + AluSg SINE Alu 1 301 -9 415 263 117 21 chr12 46384894 46385134 -97897355 - L1ME4a LINE L1 -248 5873 5611 * 3883 184 46 41 chr12 46385133 46386199 -97896290 - L1MB3 LINE L1 -1 6182 5118 5736 42 0 0 chr12 46386199 46386887 -97895602 + L1PA5 LINE L1 5450 6137 -17 3883 184 46 41 chr12 46386887 46386953 -97895536 - L1MB3 LINE L1 -1065 5118 5054 389 119 2 0 chr12 46386954 46387018 -97895471 - L1MB3 LINE L1 -1395 4751 4687 26 0 0 0 chr12 46387175 46387201 -97895288 + AT_rich Low_complexity Low_complexity 1 26 0 786 266 48 0 chr12 46387201 46387430 -97895059 - L1MD3 LINE L1 -10 7985 7746 2781 13 0 0 chr12 46387461 46387762 -97894727 - AluYa5 SINE Alu -10 301 1 989 187 14 18 chr12 46387765 46387984 -97894505 - L1MC4a LINE L1 -583 7225 7008 500 276 34 71 chr12 46388208 46388587 -97893902 - L2 LINE L2 -207 3106 2740 1642 163 72 85 chr12 46388635 46389108 -97893381 - MLT1C LTR MaLR 0 467 1 2307 91 0 3 chr12 46389179 46389476 -97893013 - AluSx SINE Alu -16 296 1 1739 197 0 3 chr12 46389522 46389827 -97892662 - AluSx SINE Alu -7 305 2 21 89 0 0 chr12 46390190 46390246 -97892243 + AT_rich Low_complexity Low_complexity 1 56 0 894 251 9 9 chr12 46390665 46390888 -97891601 + MER58A DNA MER1_type 2 224 0 313 350 54 90 chr12 46391059 46391505 -97890984 - L2 LINE L2 -1 3271 2842 775 297 114 62 chr12 46391617 46392530 -97889959 - L2 LINE L2 -654 2660 1701 594 266 0 22 chr12 46392667 46392806 -97889683 + L2 LINE L2 3178 3313 0 1152 330 148 18 chr12 46394250 46395056 -97887433 - L3 LINE CR1 -109 1468 522 331 278 65 9 chr12 46395187 46395295 -97887194 + MIR SINE MIR 124 237 -25 373 82 0 0 chr12 46395299 46395348 -97887141 - Ricksha DNA DNA -2342 904 856 2243 107 3 0 chr12 46395363 46395661 -97886828 + AluSq SINE Alu 1 299 -14 1986 188 27 98 chr12 46395677 46396230 -97886259 - MLT2B3 LTR ERVL -40 514 1 361 270 147 38 chr12 46396261 46396603 -97885886 - MLT1J1 LTR MaLR 0 446 50 360 64 0 0 chr12 46396664 46396711 -97885778 + (CAT)n Simple_repeat Simple_repeat 2 48 0 221 349 12 0 chr12 46396719 46396805 -97885684 - L3 LINE CR1 -1056 521 435 11047 29 0 0 chr12 46396805 46398884 -97883605 - L1PA2 LINE L1 0 6155 4076 1407 29 0 0 chr12 46398884 46399056 -97883433 + L1P LINE L1 3869 4040 -2106 262 187 149 47 chr12 46399512 46399619 -97882870 - L1ME4a LINE L1 -23 6098 5981 1681 199 77 136 chr12 46400372 46400518 -97881971 + MLT1E2 LTR MaLR 1 154 -472 2060 143 3 0 chr12 46400518 46400819 -97881670 + AluSx SINE Alu 3 304 -8 1681 199 77 136 chr12 46400819 46401335 -97881154 + MLT1E2 LTR MaLR 154 626 0 249 264 104 62 chr12 46401384 46401528 -97880961 + L2 LINE L2 2935 3084 -188 429 20 0 0 chr12 46402318 46402368 -97880121 + (CA)n Simple_repeat Simple_repeat 2 51 0 25 31 0 0 chr12 46403780 46403812 -97878677 + AT_rich Low_complexity Low_complexity 1 32 0 195 344 54 43 chr12 46403976 46404069 -97878420 - L2 LINE L2 -46 3226 3133 548 233 74 117 chr12 46405087 46405379 -97877110 + L2 LINE L2 3016 3296 -17 1284 172 0 15 chr12 46405379 46405652 -97876837 - L1MA4 LINE L1 -5 6295 6027 548 233 74 117 chr12 46405652 46405668 -97876821 + L2 LINE L2 3296 3311 -2 279 322 62 27 chr12 46406790 46406936 -97875553 - MER5B DNA MER1_type -3 175 25 * 303 296 72 40 chr12 46406817 46406942 -97875547 + MER5A DNA MER1_type 43 171 -18 396 265 0 0 chr12 46407162 46407264 -97875225 + MER46C DNA MER2_type 92 193 -145 231 107 24 48 chr12 46407310 46407394 -97875095 + (TA)n Simple_repeat Simple_repeat 1 82 0 2484 119 11 19 chr12 46407423 46407800 -97874689 - THE1C LTR MaLR 0 375 2 356 143 14 0 chr12 46407800 46407870 -97874619 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 27 29 0 0 chr12 46408354 46408388 -97874101 + AT_rich Low_complexity Low_complexity 1 34 0 219 278 37 0 chr12 46408890 46408944 -97873545 + MIR SINE MIR 92 147 -115 21 95 0 0 chr12 46409058 46409121 -97873368 + AT_rich Low_complexity Low_complexity 1 63 0 325 283 50 88 chr12 46409169 46409328 -97873161 + MIR SINE MIR 17 169 -93 22 0 0 0 chr12 46409751 46409773 -97872716 + AT_rich Low_complexity Low_complexity 1 22 0 1339 289 97 39 chr12 46409778 46410651 -97871838 + L1MEd LINE L1 76 999 -5120 1720 127 15 19 chr12 46411016 46411284 -97871205 + AluJb SINE Alu 21 287 -25 1433 235 62 8 chr12 46411456 46411967 -97870522 - MLT1E2 LTR MaLR 0 626 40 247 278 119 63 chr12 46412021 46412229 -97870260 + L1MEd LINE L1 2255 2481 -3648 1551 178 62 17 chr12 46412229 46412347 -97870142 + AluJo SINE Alu 1 112 -200 450 0 0 0 chr12 46412347 46412397 -97870092 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 1551 178 62 17 chr12 46412397 46412570 -97869919 + AluJo SINE Alu 112 305 -7 247 278 119 63 chr12 46412570 46412613 -97869876 + L1MEd LINE L1 2481 2520 -3609 356 273 76 23 chr12 46412627 46412840 -97869649 + L1MEd LINE L1 3019 3248 -2881 1625 218 54 18 chr12 46414975 46415365 -97867124 - LTR52 LTR ERVL -3 418 15 2153 116 0 3 chr12 46416294 46416629 -97865860 + AluSx SINE Alu 1 312 0 305 252 57 69 chr12 46418051 46418210 -97864279 + HAL1b LINE L1 376 532 -816 4440 237 26 16 chr12 46418786 46419267 -97863222 - L1P LINE L1 -2172 3974 3499 1798 159 7 27 chr12 46419267 46419568 -97862921 - AluSx SINE Alu -17 295 1 234 0 0 0 chr12 46419569 46419595 -97862894 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4440 237 26 16 chr12 46419595 46420399 -97862090 - L1P LINE L1 -2646 3500 2674 * 5250 183 26 16 chr12 46420398 46421572 -97860917 + L1PA15 LINE L1 3995 5157 -1008 2287 130 31 0 chr12 46421572 46421925 -97860564 + THE1B LTR MaLR 1 364 0 5250 183 26 16 chr12 46421925 46422368 -97860121 + L1PA15 LINE L1 5157 5594 -571 1963 138 47 97 chr12 46422368 46422579 -97859910 - MER9 LTR ERVK 0 511 291 188 83 0 28 chr12 46422579 46422615 -97859874 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1963 138 47 97 chr12 46422615 46422941 -97859548 - MER9 LTR ERVK -220 291 1 5250 183 26 16 chr12 46422941 46423456 -97859033 + L1PA15 LINE L1 5594 6159 -6 330 292 8 50 chr12 46424238 46424358 -97858131 - MIR SINE MIR -130 132 18 290 303 40 0 chr12 46424363 46424462 -97858027 + MIR SINE MIR 78 180 -82 198 0 0 0 chr12 46425204 46425226 -97857263 + (T)n Simple_repeat Simple_repeat 1 22 0 2795 163 33 30 chr12 46428564 46429073 -97853416 + Tigger7 DNA MER2_type 1 511 -1976 537 176 11 0 chr12 46429081 46429172 -97853317 + Tigger7 DNA MER2_type 2396 2487 0 273 314 25 42 chr12 46429592 46429710 -97852779 - MIR SINE MIR -1 261 146 2462 108 13 5 chr12 46430010 46430382 -97852107 + THE1C LTR MaLR 1 375 0 2075 106 3 67 chr12 46430615 46430944 -97851545 - AluSx SINE Alu -4 308 1 460 258 115 95 chr12 46432276 46432474 -97850015 + MLT1I LTR MaLR 3 195 -214 2156 127 0 0 chr12 46432474 46432782 -97849707 - AluSg SINE Alu -2 308 1 460 258 115 95 chr12 46432782 46432974 -97849515 + MLT1I LTR MaLR 195 401 -8 227 109 43 22 chr12 46434371 46434417 -97848072 + L1 LINE L1 3711 3757 -2389 2190 108 0 0 chr12 46434423 46434710 -97847779 + AluSx SINE Alu 5 291 -21 512 200 0 0 chr12 46435249 46435344 -97847145 - L1MC3 LINE L1 -488 7297 7203 506 206 20 10 chr12 46435344 46435446 -97847043 - MLT1F1 LTR MaLR -430 137 35 3421 205 15 61 chr12 46435446 46436330 -97846159 - L1MC3 LINE L1 -688 7097 6255 225 303 230 7 chr12 46436525 46436677 -97845812 - L3 LINE CR1 -3 1574 1389 273 243 104 90 chr12 46437158 46437302 -97845187 + MIR3 SINE MIR 31 176 -32 262 358 41 0 chr12 46437515 46437638 -97844851 + MIR SINE MIR 126 253 -9 1814 138 65 30 chr12 46437754 46438124 -97844365 - L1 LINE L1 -1966 4180 3798 788 181 31 57 chr12 46438382 46438609 -97843880 - L1MB3 LINE L1 -2 6181 5961 2858 183 44 20 chr12 46438740 46439533 -97842956 - L1MB3 LINE L1 -279 5904 5088 5706 39 7 0 chr12 46439533 46440222 -97842267 + L1PA5 LINE L1 5450 6143 -11 9297 148 16 4 chr12 46440238 46442952 -97839537 + L1MA2 LINE L1 3556 6304 0 3848 136 17 17 chr12 46442952 46443634 -97838855 + L1MA8 LINE L1 5594 6286 -5 29 28 0 0 chr12 46443636 46443672 -97838817 + AT_rich Low_complexity Low_complexity 1 36 0 366 23 0 0 chr12 46443744 46443787 -97838702 + (TG)n Simple_repeat Simple_repeat 2 44 0 1428 240 63 58 chr12 46444217 46444615 -97837874 - MLT1E3 LTR MaLR 0 624 245 2408 77 7 0 chr12 46444615 46444914 -97837575 - AluSg SINE Alu -9 301 1 1428 240 63 58 chr12 46444914 46445159 -97837330 - MLT1E3 LTR MaLR -379 245 3 2204 106 3 3 chr12 46446355 46446666 -97835823 - AluSx SINE Alu -1 311 1 202 385 95 42 chr12 46446712 46447289 -97835200 + L2 LINE L2 1922 2529 -785 230 381 108 0 chr12 46447428 46447567 -97834922 + L2 LINE L2 3111 3264 -8 2795 163 33 30 chr12 46449573 46450082 -97832407 + Tigger7 DNA MER2_type 1 511 -1976 537 176 11 0 chr12 46450090 46450181 -97832308 + Tigger7 DNA MER2_type 2396 2487 0 273 314 25 42 chr12 46450601 46450719 -97831770 - MIR SINE MIR -1 261 146 2462 108 13 5 chr12 46451019 46451391 -97831098 + THE1C LTR MaLR 1 375 0 2075 106 3 67 chr12 46451624 46451953 -97830536 - AluSx SINE Alu -4 308 1 460 258 115 95 chr12 46453285 46453483 -97829006 + MLT1I LTR MaLR 3 195 -214 2156 127 0 0 chr12 46453483 46453791 -97828698 - AluSg SINE Alu -2 308 1 460 258 115 95 chr12 46453791 46453983 -97828506 + MLT1I LTR MaLR 195 401 -8 2144 131 53 59 chr12 46455379 46455431 -97827058 + L1 LINE L1 3711 3762 -2384 2212 107 7 0 chr12 46455431 46455729 -97826760 + AluSx SINE Alu 5 304 -8 2144 131 53 59 chr12 46455729 46456149 -97826340 + L1 LINE L1 3762 4180 -1966 262 358 41 0 chr12 46456265 46456388 -97826101 - MIR SINE MIR -9 253 126 268 252 105 84 chr12 46456602 46456745 -97825744 - MIR3 SINE MIR -32 176 31 225 303 230 7 chr12 46457226 46457378 -97825111 + L3 LINE CR1 1389 1574 -3 3421 205 15 61 chr12 46457573 46458457 -97824032 + L1MC3 LINE L1 6255 7097 -688 506 206 20 10 chr12 46458457 46458559 -97823930 + MLT1F1 LTR MaLR 35 137 -430 512 200 0 0 chr12 46458559 46458654 -97823835 + L1MC3 LINE L1 7203 7297 -488 2328 98 0 0 chr12 46459188 46459484 -97823005 - AluSx SINE Alu -16 296 1 1337 69 11 5 chr12 46460529 46460718 -97821771 - L1PA13 LINE L1 -1 6162 5973 288 268 0 0 chr12 46461623 46461694 -97820795 + (CA)n Simple_repeat Simple_repeat 2 72 0 357 125 0 0 chr12 46461990 46462046 -97820443 + (TCC)n Simple_repeat Simple_repeat 3 58 0 228 261 183 17 chr12 46463347 46463462 -97819027 - MIR SINE MIR -7 255 122 207 0 0 0 chr12 46463987 46464010 -97818479 + (TG)n Simple_repeat Simple_repeat 2 24 0 2257 145 29 3 chr12 46464029 46464409 -97818080 + MLT1B LTR MaLR 1 390 0 1361 160 91 0 chr12 46464712 46464943 -97817546 + AluJb SINE Alu 37 288 -24 248 349 151 28 chr12 46465190 46465402 -97817087 + L2 LINE L2 3025 3262 -10 182 262 0 0 chr12 46465430 46465472 -97817017 - MIR SINE MIR -67 141 100 615 301 199 12 chr12 46465501 46465843 -97816646 - L2 LINE L2 -422 2892 2487 898 308 168 32 chr12 46465856 46466776 -97815713 - L2 LINE L2 -8 3305 2250 215 213 21 0 chr12 46466807 46466854 -97815635 - L2 LINE L2 -968 2346 2299 334 315 62 8 chr12 46467592 46467722 -97814767 - MIR SINE MIR -64 198 62 1136 269 116 18 chr12 46468686 46469340 -97813149 - L1ME3A LINE L1 -208 6460 5734 595 284 120 22 chr12 46469378 46469603 -97812886 + MIR SINE MIR 16 262 0 1343 263 107 62 chr12 46469697 46470880 -97811609 - L1ME3A LINE L1 -1071 5573 4338 351 311 36 16 chr12 46471203 46471396 -97811093 - L1ME3A LINE L1 -286 5884 5688 1324 273 72 25 chr12 46471397 46472236 -97810253 - L1ME3A LINE L1 -2298 4346 3469 845 249 97 50 chr12 46472250 46472952 -97809537 - L1MEc LINE L1 -3317 3327 2593 242 280 27 0 chr12 46473208 46473283 -97809206 - L1MEc LINE L1 -4652 1994 1918 283 210 82 108 chr12 46473337 46473532 -97808957 - L1M2 LINE L1 -4338 2511 2322 647 310 76 58 chr12 46473532 46473673 -97808816 - L1MEc LINE L1 -4848 1844 1707 180 0 0 0 chr12 46473673 46473693 -97808796 + (GA)n Simple_repeat Simple_repeat 2 21 0 647 310 76 58 chr12 46473693 46474253 -97808236 - L1MEc LINE L1 -4985 1707 970 323 322 51 8 chr12 46474563 46474681 -97807808 - L1MEc LINE L1 -5946 688 566 344 296 9 86 chr12 46474802 46474923 -97807566 + L2 LINE L2 3111 3209 -104 1879 144 10 7 chr12 46474923 46475221 -97807268 + AluSx SINE Alu 1 299 -13 344 296 9 86 chr12 46475221 46475319 -97807170 + L2 LINE L2 3209 3313 0 909 165 0 43 chr12 46475967 46476158 -97806331 + FAM SINE Alu 1 49 0 1082 327 154 29 chr12 46476399 46477124 -97805365 - L3 LINE CR1 -553 1024 209 749 296 143 28 chr12 46477669 46477990 -97804499 - MLT1J LTR MaLR -151 360 3 272 287 54 31 chr12 46478101 46478230 -97804259 - L1MC4a LINE L1 -1847 5961 5830 629 268 89 71 chr12 46478234 46478467 -97804022 - L1MC4a LINE L1 -2030 5778 5534 1195 208 81 22 chr12 46478467 46478789 -97803700 + MER2 DNA MER2_type 2 342 -2 629 268 89 71 chr12 46478789 46478947 -97803542 - L1MC4a LINE L1 -2274 5534 5380 419 293 105 42 chr12 46478954 46479479 -97803010 - L1MC4a LINE L1 -958 5188 4631 3455 98 4 6 chr12 46479616 46480125 -97802364 - L1PA13 LINE L1 0 6163 5656 341 131 49 8 chr12 46480125 46480247 -97802242 + (TA)n Simple_repeat Simple_repeat 1 127 0 2683 91 21 0 chr12 46480268 46480702 -97801787 - L1PA13 LINE L1 -526 5635 5193 25 51 0 0 chr12 46480900 46480939 -97801550 + AT_rich Low_complexity Low_complexity 1 39 0 5285 142 24 20 chr12 46480981 46481910 -97800579 - L1MA7 LINE L1 -7 6284 5353 5872 175 21 12 chr12 46481972 46483176 -97799313 - L1MA7 LINE L1 -777 5369 4155 23 54 0 0 chr12 46483768 46483805 -97798684 + AT_rich Low_complexity Low_complexity 1 37 0 858 182 42 0 chr12 46484924 46485116 -97797373 - L1MA6 LINE L1 -4 6296 6097 299 213 0 0 chr12 46485116 46485177 -97797312 + L1M LINE L1 5367 5427 -907 204 257 86 29 chr12 46485741 46485811 -97796678 - MER91C DNA MER1_type -46 94 21 272 299 72 0 chr12 46485825 46485922 -97796567 - MER117 DNA MER1_type -49 148 45 768 160 15 0 chr12 46486502 46486633 -97795856 - MSTA LTR MaLR -83 345 213 6750 74 8 1 chr12 46486858 46488500 -97793989 + L1PA8 LINE L1 4523 6169 -3 186 382 38 8 chr12 46489574 46489705 -97792784 + L2 LINE L2 2885 3019 -253 1800 160 7 0 chr12 46489709 46490021 -97792468 + AluSx SINE Alu 1 314 0 255 290 0 14 chr12 46490430 46490499 -97791990 + GA-rich Low_complexity Low_complexity 2 69 0 21 57 0 0 chr12 46490715 46490750 -97791739 + AT_rich Low_complexity Low_complexity 1 35 0 408 315 112 25 chr12 46491115 46491312 -97791177 - MIR SINE MIR -47 215 2 378 0 0 0 chr12 46491321 46491363 -97791126 + (CA)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr12 46491563 46491584 -97790905 + AT_rich Low_complexity Low_complexity 1 21 0 419 300 81 33 chr12 46491813 46492146 -97790343 + L1ME4a LINE L1 5329 5677 -444 5086 36 0 0 chr12 46492150 46492757 -97789732 - L1PA4 LINE L1 -7 6148 5542 1188 60 18 0 chr12 46492757 46492923 -97789566 + L1P1 LINE L1 5282 5450 -705 372 308 40 40 chr12 46492972 46493225 -97789264 + L1ME4a LINE L1 5741 5993 -128 25 0 0 0 chr12 46493496 46493521 -97788968 + AT_rich Low_complexity Low_complexity 1 25 0 320 309 13 7 chr12 46493603 46493752 -97788737 + (TA)n Simple_repeat Simple_repeat 2 151 0 637 195 74 0 chr12 46496333 46496482 -97786007 + MER33 DNA MER1_type 9 168 -156 375 256 95 66 chr12 46496705 46496945 -97785544 - MIR SINE MIR -1 261 6 21 36 0 0 chr12 46498602 46498630 -97783859 + AT_rich Low_complexity Low_complexity 1 28 0 312 325 163 15 chr12 46498652 46498855 -97783634 - MIR SINE MIR -28 234 2 180 231 182 33 chr12 46499821 46499942 -97782547 - MIR SINE MIR -110 152 14 1700 73 0 9 chr12 46500154 46500372 -97782117 - AluSc SINE Alu -93 216 1 3085 46 31 5 chr12 46500711 46501102 -97781387 + L1P3 LINE L1 5366 5766 -388 21 0 0 0 chr12 46501308 46501329 -97781160 + AT_rich Low_complexity Low_complexity 1 21 0 328 246 363 11 chr12 46502304 46502483 -97780006 - MIR SINE MIR 0 262 21 746 322 113 8 chr12 46502668 46503059 -97779430 - L2 LINE L2 -353 2961 2530 4169 198 21 24 chr12 46503077 46504833 -97777656 - L1MB5 LINE L1 0 6174 4319 2757 212 47 17 chr12 46504845 46505547 -97776942 - L1MA10 LINE L1 -18 6316 5594 2009 133 0 20 chr12 46505629 46505929 -97776560 - AluSx SINE Alu -18 294 1 236 253 37 25 chr12 46505988 46506150 -97776339 + (TA)n Simple_repeat Simple_repeat 1 164 0 240 200 67 58 chr12 46506176 46506296 -97776193 - L1ME LINE L1 -702 5462 5342 313 272 22 83 chr12 46506298 46506478 -97776011 - L1ME3A LINE L1 -96 6074 5906 265 243 112 9 chr12 46506481 46506588 -97775901 - L1ME3A LINE L1 -225 5945 5828 228 128 85 0 chr12 46506969 46507016 -97775473 + T-rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr12 46507178 46507207 -97775282 + AT_rich Low_complexity Low_complexity 1 29 0 309 361 9 9 chr12 46507612 46507720 -97774769 + MIR SINE MIR 6 113 -149 3977 167 2 70 chr12 46507758 46508675 -97773814 - L1 LINE L1 -1661 4485 3631 200 219 0 0 chr12 46508771 46508812 -97773677 + CT-rich Low_complexity Low_complexity 1 41 0 2685 185 26 1 chr12 46508879 46509680 -97772809 + L1MA8 LINE L1 4783 5607 -705 * 9584 150 15 16 chr12 46509679 46509813 -97772676 + L1MA2 LINE L1 3440 3573 -2731 7293 33 10 1 chr12 46509813 46510853 -97771636 + L1PA5 LINE L1 5096 6143 -11 9584 150 15 16 chr12 46510853 46513584 -97768905 + L1MA2 LINE L1 3573 6304 0 3848 136 17 17 chr12 46513584 46514266 -97768223 + L1MA8 LINE L1 5594 6286 -5 29 28 0 0 chr12 46514268 46514304 -97768185 + AT_rich Low_complexity Low_complexity 1 36 0 366 23 0 0 chr12 46514376 46514419 -97768070 + (TG)n Simple_repeat Simple_repeat 2 44 0 1428 240 63 58 chr12 46514849 46515247 -97767242 - MLT1E3 LTR MaLR 0 624 245 2417 77 7 0 chr12 46515247 46515547 -97766942 - AluSg SINE Alu -8 302 1 1428 240 63 58 chr12 46515547 46515792 -97766697 - MLT1E3 LTR MaLR -379 245 3 2204 106 3 3 chr12 46516988 46517299 -97765190 - AluSx SINE Alu -1 311 1 202 385 95 42 chr12 46517345 46517922 -97764567 + L2 LINE L2 1922 2529 -785 230 381 108 0 chr12 46518061 46518200 -97764289 + L2 LINE L2 3111 3264 -8 2453 91 41 0 chr12 46519394 46519735 -97762754 + THE1A LTR MaLR 1 355 0 11290 91 22 0 chr12 46519735 46521281 -97761208 + THE1A-int LTR MaLR 1 1580 0 2466 96 3 33 chr12 46521281 46521518 -97760971 + THE1A LTR MaLR 1 225 -130 2276 90 3 0 chr12 46521518 46521817 -97760672 + AluSc SINE Alu 1 300 -9 2466 96 3 33 chr12 46521817 46521945 -97760544 + THE1A LTR MaLR 225 355 0 30 45 0 0 chr12 46523791 46523835 -97758654 + AT_rich Low_complexity Low_complexity 1 44 0 201 292 76 76 chr12 46525299 46525443 -97757046 + MIR SINE MIR 84 227 -35 22 56 0 0 chr12 46526121 46526157 -97756332 + AT_rich Low_complexity Low_complexity 1 36 0 12803 208 59 28 chr12 46526201 46526711 -97755778 - L1MA9 LINE L1 -1 6199 5706 369 0 0 0 chr12 46526711 46526752 -97755737 + (TG)n Simple_repeat Simple_repeat 2 42 0 12803 208 59 28 chr12 46526752 46527026 -97755463 - L1MA9 LINE L1 -494 5706 5442 2154 92 37 3 chr12 46527026 46527320 -97755169 - AluSg SINE Alu 0 310 7 12803 208 59 28 chr12 46527320 46528118 -97754371 - L1MA9 LINE L1 -758 5442 4670 1357 229 10 20 chr12 46528118 46528424 -97754065 - AluJo SINE Alu -9 303 1 12803 208 59 28 chr12 46528424 46531753 -97750736 - L1MA9 LINE L1 -1530 4670 1445 3976 165 41 17 chr12 46531753 46532468 -97750021 - MER44D DNA MER2_type -1 604 1 12803 208 59 28 chr12 46532468 46532686 -97749803 - L1MA9 LINE L1 -4755 1445 1235 1803 146 7 24 chr12 46532686 46532994 -97749495 - AluSx SINE Alu 0 303 1 12803 208 59 28 chr12 46532994 46533560 -97748929 - L1MA9 LINE L1 -4965 1235 458 2150 301 106 7 chr12 46533626 46534594 -97747895 - L1MA9 LINE L1 -5174 781 11 21 36 0 0 chr12 46535525 46535553 -97746936 + AT_rich Low_complexity Low_complexity 1 28 0 203 271 0 47 chr12 46535814 46535921 -97746568 + T-rich Low_complexity Low_complexity 6 107 0 2281 102 0 7 chr12 46536614 46536918 -97745571 - AluSx SINE Alu -10 302 1 26 50 0 0 chr12 46538114 46538154 -97744335 + AT_rich Low_complexity Low_complexity 1 40 0 22 70 0 0 chr12 46538205 46538248 -97744241 + AT_rich Low_complexity Low_complexity 1 43 0 227 263 0 0 chr12 46539161 46539218 -97743271 + T-rich Low_complexity Low_complexity 4 60 0 2339 80 3 20 chr12 46540532 46540834 -97741655 - AluSp SINE Alu -16 297 1 24 0 0 0 chr12 46540894 46540918 -97741571 + AT_rich Low_complexity Low_complexity 1 24 0 521 157 0 0 chr12 46541277 46541366 -97741123 + L1PB4 LINE L1 6054 6142 -14 7470 174 50 3 chr12 46541427 46542711 -97739778 + L1PA16 LINE L1 22 1365 -6200 4900 140 45 8 chr12 46542717 46543773 -97738716 + L1PA16 LINE L1 6487 7577 -8 210 259 0 0 chr12 46543835 46543893 -97738596 + (TA)n Simple_repeat Simple_repeat 2 59 0 185 330 41 62 chr12 46544067 46544164 -97738325 + L2 LINE L2 3126 3220 -52 2406 67 0 0 chr12 46546105 46546404 -97736085 - AluY SINE Alu -12 299 1 475 308 77 6 chr12 46546638 46546794 -97735695 - MIR3 SINE MIR -2 206 40 450 208 21 76 chr12 46547069 46547213 -97735276 - MIR SINE MIR -8 254 119 2207 92 3 0 chr12 46547842 46548124 -97734365 + AluSp SINE Alu 1 283 -30 275 301 0 34 chr12 46548254 46548392 -97734097 + MER5A DNA MER1_type 1 141 -48 216 97 0 0 chr12 46548665 46548696 -97733793 + (TA)n Simple_repeat Simple_repeat 2 32 0 1182 109 0 0 chr12 46549202 46549416 -97733073 + (TA)n Simple_repeat Simple_repeat 1 214 0 12003 198 39 43 chr12 46549546 46552043 -97730446 - L1PA16 LINE L1 -9 6860 4355 1166 104 0 0 chr12 46552043 46552197 -97730292 - AluSg/x SINE Alu -3 309 156 12003 198 39 43 chr12 46552197 46554871 -97727618 - L1PA16 LINE L1 -2514 4355 2009 1888 109 4 8 chr12 46554871 46555137 -97727352 - AluSq SINE Alu -5 308 44 12003 198 39 43 chr12 46555137 46557138 -97725351 - L1PA16 LINE L1 -4860 2009 2 436 335 164 33 chr12 46557260 46557895 -97724594 + L2 LINE L2 1996 2713 -601 1876 192 32 91 chr12 46560272 46560809 -97721680 + MLT1D LTR MaLR 1 505 0 383 326 59 0 chr12 46561881 46562016 -97720473 + L3 LINE CR1 974 1116 -461 493 275 192 22 chr12 46562122 46562616 -97719873 - L1ME4a LINE L1 -139 5982 5405 589 233 62 76 chr12 46562647 46562935 -97719554 - MER46C DNA MER2_type -43 295 12 27 0 0 0 chr12 46562969 46562996 -97719493 + AT_rich Low_complexity Low_complexity 1 27 0 357 343 6 12 chr12 46562996 46563168 -97719321 - L1ME4a LINE L1 -765 5381 5211 1808 133 0 25 chr12 46563364 46563649 -97718840 + AluSx SINE Alu 1 278 -34 280 0 0 48 chr12 46563650 46563692 -97718797 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 619 299 47 24 chr12 46563864 46564118 -97718371 + L3 LINE CR1 1097 1356 -221 210 297 161 25 chr12 46564132 46564250 -97718239 + L2 LINE L2 2689 2822 -492 186 305 127 51 chr12 46565710 46565828 -97716661 + L2 LINE L2 3146 3272 0 329 271 178 68 chr12 46566626 46566907 -97715582 + L3 LINE CR1 771 1082 -495 624 229 14 0 chr12 46566927 46567067 -97715422 + MER31B LTR ERV1 325 466 0 3387 152 52 27 chr12 46567067 46567727 -97714762 - L1MB3 LINE L1 -100 6083 5408 1526 132 69 23 chr12 46567845 46568149 -97714340 - MER33 DNA MER1_type 0 324 7 22 35 0 0 chr12 46568663 46568692 -97713797 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr12 46569427 46569468 -97713021 + AT_rich Low_complexity Low_complexity 1 41 0 369 275 108 8 chr12 46569608 46569728 -97712761 + MIR SINE MIR 58 189 -73 399 21 0 0 chr12 46570198 46570246 -97712243 + (CA)n Simple_repeat Simple_repeat 2 49 0 272 298 57 75 chr12 46570727 46570874 -97711615 - L2 LINE L2 -18 3295 3154 2570 108 16 0 chr12 46570874 46571243 -97711246 + THE1C LTR MaLR 1 375 0 272 298 57 75 chr12 46571243 46571360 -97711129 - L2 LINE L2 -159 3154 3036 309 291 140 14 chr12 46571376 46571587 -97710902 + MIR SINE MIR 8 248 -14 196 373 66 57 chr12 46572027 46572271 -97710218 + L2 LINE L2 2980 3225 -47 410 336 15 0 chr12 46572909 46573043 -97709446 - MIR SINE MIR -70 192 57 500 299 69 7 chr12 46573621 46573765 -97708724 + MIR SINE MIR 4 156 -106 889 235 53 90 chr12 46574563 46574942 -97707547 - MLT1A1 LTR MaLR 0 365 1 611 337 43 12 chr12 46575672 46575930 -97706559 + L3 LINE CR1 480 745 -832 207 100 0 0 chr12 46575947 46575977 -97706512 + (CA)n Simple_repeat Simple_repeat 2 31 0 271 186 85 0 chr12 46576286 46576345 -97706144 - LTR67 LTR ERVL -2 555 492 231 271 52 42 chr12 46576689 46576785 -97705704 - MLT2F LTR ERVL -529 134 38 241 272 62 41 chr12 46576935 46577178 -97705311 + L1MB3 LINE L1 4182 4429 -1717 21 71 0 0 chr12 46577321 46577363 -97705126 + AT_rich Low_complexity Low_complexity 1 42 0 252 307 66 7 chr12 46577744 46577881 -97704608 + L1MB3 LINE L1 5317 5461 -2347 371 219 42 42 chr12 46578268 46578288 -97704201 - L1MA4A LINE L1 -3 6300 6281 2197 179 26 67 chr12 46578288 46578497 -97703992 - L1PB4 LINE L1 -1 6155 5939 1586 179 35 41 chr12 46578497 46578787 -97703702 - AluJb SINE Alu -24 288 1 2197 179 26 67 chr12 46578787 46579069 -97703420 - L1PB4 LINE L1 -217 5939 5684 906 130 9 126 chr12 46580349 46580564 -97701925 - AluSx SINE Alu -9 301 112 1059 98 0 0 chr12 46580605 46580738 -97701751 - AluSx SINE Alu -179 133 1 1482 177 16 7 chr12 46580929 46581234 -97701255 + L1MB3 LINE L1 5874 6181 -2 663 270 17 6 chr12 46581795 46581969 -97700520 + MER45A DNA AcHobo 1 176 -2 328 239 73 101 chr12 46582825 46583043 -97699446 + MIR SINE MIR 7 218 -44 286 264 23 23 chr12 46583413 46583500 -97698989 - MIR3 SINE MIR -5 203 117 318 325 53 9 chr12 46585317 46585431 -97697058 + MER5B DNA MER1_type 8 126 -52 390 326 69 14 chr12 46587250 46587394 -97695095 - L2 LINE L2 0 3272 3121 237 98 0 0 chr12 46587671 46587712 -97694777 - L1MA3 LINE L1 0 6305 6265 6521 118 36 4 chr12 46587764 46589129 -97693360 - L1MA2 LINE L1 -28 6276 4868 969 70 0 0 chr12 46589610 46589738 -97692751 + L1MA2 LINE L1 6173 6300 -4 233 0 62 0 chr12 46589749 46589781 -97692708 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 10623 23 4 0 chr12 46589787 46591806 -97690683 - L1PA4 LINE L1 -6 6149 4125 4014 25 0 0 chr12 46591806 46592282 -97690207 + L1PA4 LINE L1 3642 4117 -2029 30 0 0 0 chr12 46592282 46592312 -97690177 + AT_rich Low_complexity Low_complexity 1 30 0 362 341 123 49 chr12 46594124 46594920 -97687569 + L2 LINE L2 2409 3272 0 206 284 17 86 chr12 46594936 46595052 -97687437 + L3 LINE CR1 1302 1409 -168 4713 128 17 4 chr12 46595065 46595812 -97686677 + L1PA16 LINE L1 5401 6157 -9 22 35 0 0 chr12 46595812 46595841 -97686648 + AT_rich Low_complexity Low_complexity 1 29 0 248 283 164 26 chr12 46595844 46595996 -97686493 + L3 LINE CR1 1402 1574 -3 358 289 150 26 chr12 46596860 46597206 -97685283 - L1ME4a LINE L1 -128 5993 5605 2009 116 46 0 chr12 46597783 46598067 -97684422 + AluSx SINE Alu 1 297 -15 414 257 73 15 chr12 46598929 46599065 -97683424 + L2 LINE L2 3164 3307 -6 286 347 58 33 chr12 46599360 46599481 -97683008 + L2 LINE L2 3118 3241 -31 378 279 172 45 chr12 46599789 46600033 -97682456 + L2 LINE L2 3034 3308 -5 1167 118 0 53 chr12 46600316 46600503 -97681986 - AluSg/x SINE Alu 0 312 136 477 338 26 30 chr12 46600607 46600841 -97681648 + MIR SINE MIR 30 262 0 23 54 0 0 chr12 46602034 46602071 -97680418 + AT_rich Low_complexity Low_complexity 1 37 0 473 285 120 20 chr12 46602981 46603181 -97679308 + MIR SINE MIR 37 256 -6 198 0 0 0 chr12 46603237 46603259 -97679230 + (TTA)n Simple_repeat Simple_repeat 3 24 0 655 13 0 0 chr12 46603259 46603335 -97679154 - L1PA5 LINE L1 -18 6136 6061 2026 272 138 16 chr12 46604630 46605478 -97677011 + L2 LINE L2 1728 2678 -636 808 297 50 21 chr12 46605451 46605828 -97676661 + L2 LINE L2 2824 3211 -102 * 187 333 11 46 chr12 46605844 46605931 -97676558 - L3 LINE CR1 -1 1576 1493 2036 112 0 30 chr12 46607988 46608284 -97674205 - AluSx SINE Alu -6 306 20 518 236 115 32 chr12 46608320 46608477 -97674012 - L2 LINE L2 0 3313 3144 183 129 0 0 chr12 46610082 46610113 -97672376 + (A)n Simple_repeat Simple_repeat 1 31 0 349 299 140 27 chr12 46610252 46610374 -97672115 + MIR SINE MIR 2 109 -153 706 134 8 0 chr12 46610374 46610493 -97671996 + L1MA9 LINE L1 6183 6302 -10 349 299 140 27 chr12 46610493 46610591 -97671898 + MIR SINE MIR 109 247 -15 2374 103 0 0 chr12 46611257 46611567 -97670922 - AluSx SINE Alu -2 310 1 426 39 0 0 chr12 46612102 46612154 -97670335 + (TG)n Simple_repeat Simple_repeat 1 52 0 258 32 0 0 chr12 46612494 46612525 -97669964 + (TTA)n Simple_repeat Simple_repeat 2 32 0 377 302 77 12 chr12 46614250 46614419 -97668070 - MLT1J1 LTR MaLR -3 443 264 327 294 28 72 chr12 46614425 46614605 -97667884 - MLT1J2 LTR MaLR -220 230 59 570 295 12 0 chr12 46615837 46616003 -97666486 - MER69A DNA AcHobo -2 175 8 419 293 16 16 chr12 46616213 46616336 -97666153 - MER5A DNA MER1_type -30 159 37 742 185 15 0 chr12 46616487 46616617 -97665872 + AluJ SINE Alu 1 132 -170 491 91 26 0 chr12 46616619 46616696 -97665793 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 1046 142 0 0 chr12 46616699 46616847 -97665642 + AluJ SINE Alu 141 288 -24 447 289 33 22 chr12 46617381 46617561 -97664928 - MER5A DNA MER1_type 0 189 8 793 263 31 0 chr12 46618016 46618211 -97664278 + MIR SINE MIR 43 247 -15 257 327 73 18 chr12 46619975 46620085 -97662404 - L2 LINE L2 -10 3262 3147 350 237 0 65 chr12 46621447 46621540 -97660949 - MIR3 SINE MIR -3 205 119 310 231 90 30 chr12 46622320 46622454 -97660035 - MIR SINE MIR 0 262 121 386 339 55 12 chr12 46622491 46622656 -97659833 - MIR3 SINE MIR -14 194 23 959 180 12 0 chr12 46622939 46623100 -97659389 + AluJo SINE Alu 136 298 -14 530 265 122 16 chr12 46624086 46624275 -97658214 - MIR SINE MIR -1 261 53 190 114 0 57 chr12 46624549 46624584 -97657905 - MIR SINE MIR -84 178 146 27 0 0 0 chr12 46624605 46624632 -97657857 + AT_rich Low_complexity Low_complexity 1 27 0 30 59 0 0 chr12 46624798 46624849 -97657640 + AT_rich Low_complexity Low_complexity 1 51 0 297 0 0 0 chr12 46627685 46627718 -97654771 + (CA)n Simple_repeat Simple_repeat 2 34 0 29 47 0 0 chr12 46628117 46628160 -97654329 + AT_rich Low_complexity Low_complexity 1 43 0 218 200 0 0 chr12 46629968 46630008 -97652481 + (TTGG)n Simple_repeat Simple_repeat 2 41 0 2108 28 0 0 chr12 46630008 46630257 -97652232 - L1PA4 LINE L1 0 6155 5907 456 259 20 80 chr12 46630880 46631081 -97651408 - MIR SINE MIR -41 221 33 331 307 87 55 chr12 46632752 46633006 -97649483 + L2 LINE L2 2490 2751 -563 1028 282 93 19 chr12 46633044 46633420 -97649069 - MLT1J2 LTR MaLR -35 415 12 294 272 66 66 chr12 46633422 46633558 -97648931 - MER5B DNA MER1_type -41 137 2 2271 101 16 0 chr12 46634057 46634364 -97648125 + AluSx SINE Alu 1 312 0 219 146 0 0 chr12 46635564 46635605 -97646884 + (T)n Simple_repeat Simple_repeat 1 41 0 566 130 23 30 chr12 46636447 46636578 -97645911 + L1MA7 LINE L1 6161 6290 -1 404 291 32 38 chr12 46636599 46636757 -97645732 - L2 LINE L2 -473 2841 2685 541 285 70 17 chr12 46637288 46637460 -97645029 + LTR16A LTR ERVL 1 181 -269 352 320 16 0 chr12 46637464 46637592 -97644897 + HERV16 LTR ERVL 1178 1307 -3689 272 325 0 0 chr12 46637590 46637667 -97644822 + HERV16 LTR ERVL 2454 2530 -3234 * 682 288 49 15 chr12 46637881 46638145 -97644344 + HERV16 LTR ERVL 1593 1865 -3131 491 193 75 67 chr12 46638182 46638476 -97644013 - MSTC LTR MaLR -83 345 1 2734 351 44 34 chr12 46638503 46639458 -97643031 + HERV16 LTR ERVL 2057 3001 -2763 2285 107 72 17 chr12 46639458 46639803 -97642686 - THE1B LTR MaLR 0 364 1 2734 351 44 34 chr12 46639803 46640739 -97641750 + HERV16 LTR ERVL 3001 3966 -1798 227 79 26 0 chr12 46641844 46641882 -97640607 + (CA)n Simple_repeat Simple_repeat 2 40 0 201 224 0 0 chr12 46642100 46642158 -97640331 + (TGAA)n Simple_repeat Simple_repeat 4 61 0 439 306 73 10 chr12 46642826 46643032 -97639457 - MIR SINE MIR -7 255 37 2490 54 0 3 chr12 46644093 46644388 -97638101 + AluY SINE Alu 3 296 -15 1585 176 17 35 chr12 46644864 46645154 -97637335 - AluJo SINE Alu -21 291 7 180 0 0 0 chr12 46645166 46645186 -97637303 + (T)n Simple_repeat Simple_repeat 1 20 0 295 303 204 43 chr12 46645200 46645793 -97636696 + L2 LINE L2 2500 3191 -81 231 269 154 19 chr12 46645982 46646086 -97636403 - MER5A DNA MER1_type -56 133 16 1651 169 11 18 chr12 46646529 46646847 -97635642 + AluSx SINE Alu 1 316 0 3668 207 93 142 chr12 46646886 46648906 -97633583 + L1MCa LINE L1 3 2065 -4499 334 185 131 62 chr12 46648911 46649041 -97633448 + L1MCa LINE L1 2416 2554 -4010 467 165 0 22 chr12 46649042 46649133 -97633356 - MLT1A2 LTR MaLR 0 374 286 256 188 0 29 chr12 46649149 46649218 -97633271 - MER4-int LTR ERV1 -5418 1180 1114 2130 260 80 18 chr12 46649218 46650131 -97632358 + L1MCa LINE L1 2694 3663 -2901 762 177 64 18 chr12 46650132 46650460 -97632029 - MSTC LTR MaLR 0 428 1 3236 286 103 25 chr12 46650460 46652352 -97630137 + L1MCa LINE L1 3660 5698 -866 2533 165 5 2 chr12 46652356 46652798 -97629691 - L1PA15 LINE L1 -7 7577 7135 1828 166 12 12 chr12 46652854 46653198 -97629291 - L1PA15 LINE L1 -451 7133 6790 * 6525 217 13 17 chr12 46653197 46653676 -97628813 - L1PA15 LINE L1 -1356 6209 5730 2500 89 0 9 chr12 46653676 46654024 -97628465 + L1PA8 LINE L1 5828 6172 0 6525 217 13 17 chr12 46654024 46655066 -97627423 - L1PA15 LINE L1 -1835 5730 4694 5500 122 13 7 chr12 46655063 46655898 -97626591 - L1PA15 LINE L1 -5 6160 5321 * 3465 239 81 4 chr12 46655901 46656971 -97625518 - L1PA15 LINE L1 -2916 4649 3496 2458 46 0 0 chr12 46657527 46657873 -97624616 + AluY SINE Alu 1 346 0 246 62 0 0 chr12 46657958 46657990 -97624499 + (TG)n Simple_repeat Simple_repeat 1 32 0 734 159 8 8 chr12 46657990 46658108 -97624381 + MIR SINE MIR 85 205 -57 251 341 82 7 chr12 46658242 46658377 -97624112 + L2 LINE L2 2210 2354 -960 37 52 0 0 chr12 46658618 46658676 -97623813 + AT_rich Low_complexity Low_complexity 1 58 0 1037 235 47 24 chr12 46659707 46659962 -97622527 - MIR SINE MIR -1 261 1 192 265 20 0 chr12 46660048 46660097 -97622392 + MIR SINE MIR 148 197 -65 993 279 71 52 chr12 46660149 46660611 -97621878 + L2 LINE L2 2842 3312 -1 295 349 108 28 chr12 46660608 46660932 -97621557 + L2 LINE L2 2962 3311 -2 * 1265 239 128 38 chr12 46661059 46661536 -97620953 + MLT2B1 LTR ERVL 1 520 0 373 312 41 24 chr12 46663487 46663657 -97618832 + MIR SINE MIR 80 252 -10 452 293 6 33 chr12 46663969 46664150 -97618339 + L2 LINE L2 3134 3309 -4 2015 198 132 78 chr12 46664813 46665735 -97616754 + L1ME2 LINE L1 5160 6150 -14 808 292 148 10 chr12 46666025 46666409 -97616080 - L2 LINE L2 -8 3305 2869 419 212 220 23 chr12 46666488 46666620 -97615869 - MER5A DNA MER1_type -2 187 30 546 335 48 13 chr12 46666696 46666923 -97615566 - L2 LINE L2 -652 2662 2428 3361 294 108 16 chr12 46666926 46668410 -97614079 - L2 LINE L2 -1029 2285 664 198 0 0 0 chr12 46668441 46668463 -97614026 + (TG)n Simple_repeat Simple_repeat 2 23 0 210 136 68 17 chr12 46668463 46668503 -97613986 + (TA)n Simple_repeat Simple_repeat 2 47 -16 558 45 0 0 chr12 46668503 46668570 -97613919 + L1PA7 LINE L1 6071 6137 -17 210 136 68 17 chr12 46668570 46668588 -97613901 + (TA)n Simple_repeat Simple_repeat 47 63 0 368 87 130 0 chr12 46668605 46668674 -97613815 + L1PA12 LINE L1 6078 6155 -13 233 102 68 0 chr12 46668675 46668734 -97613755 + (TA)n Simple_repeat Simple_repeat 2 64 0 1819 234 34 28 chr12 46668736 46669237 -97613252 - MLT1D LTR MaLR -1 504 1 229 301 58 34 chr12 46669615 46669821 -97612668 - HAL1b LINE L1 -837 511 301 379 297 135 43 chr12 46670819 46671004 -97611485 - MIR SINE MIR -56 206 5 1755 149 12 19 chr12 46671101 46671422 -97611067 - L1PA16 LINE L1 -24 6142 5825 1737 149 98 3 chr12 46672331 46672627 -97609862 + MSTB LTR MaLR 1 324 -102 484 125 0 38 chr12 46672634 46672714 -97609775 + L1PA15-16 LINE L1 1536 1612 -5237 4505 114 6 5 chr12 46672714 46673383 -97609106 + L1PA16 LINE L1 5497 6166 0 921 166 6 0 chr12 46673411 46673586 -97608903 + L1MA3 LINE L1 6130 6305 0 1643 176 108 35 chr12 46674168 46674594 -97607895 + MSTB2 LTR MaLR 1 457 0 180 0 0 0 chr12 46675393 46675413 -97607076 + (A)n Simple_repeat Simple_repeat 1 20 0 214 239 0 56 chr12 46675531 46675602 -97606887 + L2 LINE L2 3247 3313 0 600 293 32 59 chr12 46676030 46676283 -97606206 + MIR SINE MIR 14 259 -3 294 311 175 6 chr12 46676605 46676782 -97605707 + L2 LINE L2 2397 2603 -711 350 295 110 17 chr12 46676832 46677005 -97605484 + L2 LINE L2 2931 3119 -194 1486 230 25 6 chr12 46677010 46677366 -97605123 + MLT1A2 LTR MaLR 1 363 -11 320 287 28 28 chr12 46677462 46677570 -97604919 + L2 LINE L2 3204 3311 -2 27 0 0 0 chr12 46679180 46679207 -97603282 + AT_rich Low_complexity Low_complexity 1 27 0 199 292 0 0 chr12 46679307 46679355 -97603134 - MIR SINE MIR -116 146 99 21 0 0 0 chr12 46680600 46680621 -97601868 + AT_rich Low_complexity Low_complexity 1 21 0 276 250 48 8 chr12 46680657 46680781 -97601708 + (TA)n Simple_repeat Simple_repeat 2 130 0 327 255 55 62 chr12 46681590 46681735 -97600754 + MIR SINE MIR 62 205 -57 1036 116 0 0 chr12 46682791 46682938 -97599551 + AluSc SINE Alu 160 306 -3 215 299 10 72 chr12 46683632 46683729 -97598760 + L2 LINE L2 3168 3258 -14 262 252 52 43 chr12 46684199 46684314 -97598175 + L1ME LINE L1 51 166 -5953 1583 174 24 30 chr12 46684652 46684950 -97597539 + AluJb SINE Alu 1 296 -16 421 331 37 57 chr12 46684950 46685195 -97597294 + L1ME LINE L1 569 808 -5311 28 0 0 0 chr12 46685206 46685234 -97597255 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr12 46685742 46685789 -97596700 + AT_rich Low_complexity Low_complexity 1 47 0 213 132 0 0 chr12 46686541 46686579 -97595910 + (TC)n Simple_repeat Simple_repeat 1 38 0 190 328 82 0 chr12 46687237 46687298 -97595191 + L2 LINE L2 3146 3211 -61 1398 148 5 0 chr12 46687313 46687536 -97594953 + MER34B LTR ERV1 1 224 -341 2612 92 102 15 chr12 46687536 46687948 -97594541 + LTR7 LTR ERV1 1 448 -2 2913 98 2 21 chr12 46687950 46688418 -97594071 + HERVH LTR ERV1 1 459 -7254 13974 95 13 20 chr12 46688472 46690683 -97591806 + HERVH LTR ERV1 793 2987 -4726 936 120 7 0 chr12 46690677 46690827 -97591662 + HERVH LTR ERV1 3140 3290 -4423 * 7371 124 13 7 chr12 46690817 46692529 -97589960 + HERVH LTR ERV1 3492 5149 -2564 1215 120 17 73 chr12 46692530 46692763 -97589726 + HERVH LTR ERV1 5600 5819 -1894 2249 96 48 13 chr12 46692763 46693140 -97589349 + HERVH LTR ERV1 7324 7713 0 2770 82 92 5 chr12 46693140 46693552 -97588937 + LTR7 LTR ERV1 1 448 -2 1511 153 68 6 chr12 46693554 46693875 -97588614 + MER34B LTR ERV1 220 560 -5 1915 165 117 7 chr12 46694054 46694473 -97588016 + MLT1C LTR MaLR 1 465 -2 463 267 75 113 chr12 46694749 46695244 -97587245 - L2 LINE L2 0 3313 2838 322 282 87 0 chr12 46696600 46696703 -97585786 - MIR3 SINE MIR -15 193 82 196 213 85 0 chr12 46696883 46696930 -97585559 + MIR SINE MIR 212 262 0 484 319 17 0 chr12 46697562 46697678 -97584811 + L2 LINE L2 3155 3272 0 340 267 281 7 chr12 46698480 46698626 -97583863 + MIR SINE MIR 63 248 -14 1058 83 28 5 chr12 46698953 46699171 -97583318 + (GAAA)n Simple_repeat Simple_repeat 1 222 0 21 0 0 0 chr12 46699359 46699380 -97583109 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr12 46699968 46699995 -97582494 + AT_rich Low_complexity Low_complexity 1 27 0 377 263 91 0 chr12 46700328 46700526 -97581963 + L1MEc LINE L1 1260 1475 -4921 457 329 92 4 chr12 46700705 46700954 -97581535 + L1MEc LINE L1 2266 2536 -3679 1020 290 45 55 chr12 46702529 46703206 -97579283 - L2 LINE L2 -73 3240 2570 1388 198 86 46 chr12 46703206 46703601 -97578888 - LTR52 LTR ERVL -3 418 8 212 267 43 43 chr12 46703609 46703725 -97578764 - L2 LINE L2 -745 2569 2454 26 50 0 0 chr12 46703745 46703785 -97578704 + AT_rich Low_complexity Low_complexity 1 40 0 1782 148 44 35 chr12 46703982 46704153 -97578336 - MER7A DNA MER2_type -2693 345 177 2614 136 29 7 chr12 46704153 46704572 -97577917 + MSTA LTR MaLR 1 428 0 8565 176 36 14 chr12 46704572 46706187 -97576302 + MSTA-int LTR MaLR 1 1651 0 2195 169 44 7 chr12 46706187 46706600 -97575889 + MSTA LTR MaLR 1 428 0 1782 148 44 35 chr12 46706600 46706770 -97575719 - MER7A DNA MER2_type -2860 178 1 247 301 87 39 chr12 46707042 46707145 -97575344 + MIR3 SINE MIR 49 156 -52 29 47 0 0 chr12 46707348 46707391 -97575098 + AT_rich Low_complexity Low_complexity 1 43 0 2219 89 13 10 chr12 46707625 46707938 -97574551 + L1PA8 LINE L1 5847 6160 -12 318 200 0 100 chr12 46707957 46708057 -97574432 - L1MC4 LINE L1 -1339 6703 6614 341 91 0 18 chr12 46708119 46708174 -97574315 + (TA)n Simple_repeat Simple_repeat 2 55 0 1054 219 54 27 chr12 46708558 46708892 -97573597 - L1 LINE L1 -3491 4074 3732 2333 124 10 7 chr12 46708898 46709302 -97573187 - L1 LINE L1 -3940 3625 3221 644 78 0 3 chr12 46709296 46709315 -97573174 - L1P4 LINE L1 -638 5525 5507 * 3861 123 2 2 chr12 46709315 46709894 -97572595 - L1PA13 LINE L1 -19 6144 5566 644 78 0 3 chr12 46709894 46709981 -97572508 - L1P4 LINE L1 -656 5507 5421 4584 186 11 8 chr12 46709982 46710944 -97571545 - L1PA13 LINE L1 -3507 3290 2326 1143 130 0 0 chr12 46710948 46711140 -97571349 - L1PA13 LINE L1 -4662 2125 1934 * 5050 107 34 50 chr12 46711139 46711638 -97570851 - L1 LINE L1 -4322 3243 2768 1699 111 8 8 chr12 46711638 46711873 -97570616 - AluSq SINE Alu -78 235 1 5050 107 34 50 chr12 46711873 46712387 -97570102 - L1 LINE L1 -4797 2768 2247 2823 221 3 14 chr12 46712379 46712946 -97569543 - L1 LINE L1 -5732 1833 1273 * 4227 123 10 5 chr12 46712955 46713564 -97568925 + LTR9 LTR ERV1 1 612 0 9452 136 20 35 chr12 46713579 46715243 -97567246 + HUERS-P3 LTR ERV1 15 1652 -7267 735 139 0 0 chr12 46715240 46715355 -97567134 + HUERS-P3 LTR ERV1 1791 1905 -7014 * 10786 138 3 12 chr12 46715398 46717213 -97565276 + HUERS-P3 LTR ERV1 2082 3975 -4944 13364 114 1 6 chr12 46717219 46719170 -97563319 + HUERS-P3 LTR ERV1 4230 6171 -2748 3419 206 57 16 chr12 46719191 46719940 -97562549 - L1 LINE L1 -6778 787 8 2480 132 11 3 chr12 46720034 46720406 -97562083 - THE1C LTR MaLR 0 375 1 9436 120 50 40 chr12 46720406 46721971 -97560518 - THE1C-int LTR MaLR 0 1580 1 2700 107 8 5 chr12 46721971 46722345 -97560144 - THE1C LTR MaLR 0 375 1 316 242 116 11 chr12 46722553 46722648 -97559841 + L2 LINE L2 3168 3272 0 205 278 10 113 chr12 46724020 46724117 -97558372 - L2 LINE L2 -40 3273 3187 243 286 75 68 chr12 46724966 46725099 -97557390 + MER5A DNA MER1_type 56 189 0 29 28 0 0 chr12 46725150 46725186 -97557303 + AT_rich Low_complexity Low_complexity 1 36 0 414 276 63 35 chr12 46725866 46726040 -97556449 - MLT1J2 LTR MaLR 0 450 272 1261 137 63 18 chr12 46726058 46726342 -97556147 - Cheshire DNA MER1_type 0 2420 2124 7811 186 16 3 chr12 46727259 46729658 -97552831 - L1PA8 LINE L1 -9 6163 3742 2520 152 13 3 chr12 46729855 46730663 -97551826 - L1M1 LINE L1 -621 5683 4868 906 86 0 0 chr12 46731144 46731272 -97551217 + L1MA2 LINE L1 6173 6300 -4 233 0 62 0 chr12 46731283 46731315 -97551174 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5054 40 2 0 chr12 46731321 46731928 -97550561 - L1PA4 LINE L1 -6 6149 5542 1133 60 18 0 chr12 46731928 46732094 -97550395 + L1P1 LINE L1 5282 5450 -705 303 312 52 45 chr12 46732143 46732297 -97550192 + L1ME4a LINE L1 5741 5895 -226 30 45 0 0 chr12 46733186 46733230 -97549259 + AT_rich Low_complexity Low_complexity 1 44 0 22 70 0 0 chr12 46735916 46735959 -97546530 + AT_rich Low_complexity Low_complexity 1 43 0 26 50 0 0 chr12 46736010 46736050 -97546439 + AT_rich Low_complexity Low_complexity 1 40 0 2069 120 0 13 chr12 46737238 46737539 -97544950 + AluSx SINE Alu 1 297 -15 10008 27 4 1 chr12 46738362 46739961 -97542528 - L1P2 LINE L1 -425 5729 4125 302 81 0 135 chr12 46739962 46740073 -97542416 + L1P LINE L1 3642 3737 -2409 21 36 0 0 chr12 46740578 46740606 -97541883 + AT_rich Low_complexity Low_complexity 1 28 0 359 261 103 44 chr12 46740913 46741116 -97541373 + MIR SINE MIR 47 261 -1 583 195 74 0 chr12 46741339 46741488 -97541001 - MER33 DNA MER1_type -156 168 9 321 298 0 41 chr12 46742200 46742321 -97540168 - L1M LINE L1 -2438 5370 5255 2206 122 3 3 chr12 46742561 46742872 -97539617 + AluSx SINE Alu 1 311 -1 389 326 69 14 chr12 46745095 46745239 -97537250 - L2 LINE L2 0 3272 3121 503 98 0 147 chr12 46745634 46745736 -97536753 - AluSq SINE Alu -113 200 114 1074 98 0 0 chr12 46745777 46745910 -97536579 - AluSq SINE Alu -179 133 1 1405 178 20 7 chr12 46746101 46746405 -97536084 + L1MB3 LINE L1 5874 6181 -2 3095 198 26 31 chr12 46747786 46749163 -97533326 - L1MB7 LINE L1 -128 6056 4583 229 414 100 0 chr12 46750316 46750456 -97532033 - L2 LINE L2 -8 3264 3111 2175 99 3 0 chr12 46751186 46751468 -97531021 - AluSp SINE Alu -30 283 1 440 246 77 100 chr12 46751978 46752238 -97530251 + MIR SINE MIR 1 254 -8 199 363 178 17 chr12 46753797 46754219 -97528270 + L2 LINE L2 2409 2898 -416 1640 158 3 3 chr12 46754897 46755181 -97527308 + MLT1B LTR MaLR 107 390 0 1686 126 3 86 chr12 46755484 46755785 -97526704 + AluSx SINE Alu 37 312 0 183 80 0 0 chr12 46756245 46756270 -97526219 + (A)n Simple_repeat Simple_repeat 1 25 0 4098 147 16 24 chr12 46756270 46757119 -97525370 + L1PA15-16 LINE L1 1930 2772 -4077 334 359 0 0 chr12 46757377 46757533 -97524956 + A-rich Low_complexity Low_complexity 1 156 0 849 232 102 36 chr12 46758112 46758357 -97524132 + MLT1E1 LTR MaLR 3 251 -373 2469 77 7 0 chr12 46758357 46758657 -97523832 + AluSg SINE Alu 1 302 -8 849 232 102 36 chr12 46758657 46758870 -97523619 + MLT1E1 LTR MaLR 251 449 -175 26 0 0 0 chr12 46759270 46759296 -97523193 + AT_rich Low_complexity Low_complexity 1 26 0 308 300 81 33 chr12 46759518 46759851 -97522638 + L1ME LINE L1 5329 5677 -444 2639 148 38 20 chr12 46759855 46760465 -97522024 - L1PA4 LINE L1 -7 6148 5528 2102 153 14 10 chr12 46761857 46762275 -97520214 - L1P4 LINE L1 -345 5821 5402 312 368 7 7 chr12 46762340 46762495 -97519994 + C-rich Low_complexity Low_complexity 2 156 0 323 226 9 38 chr12 46762571 46762677 -97519812 + CT-rich Low_complexity Low_complexity 3 105 0 1646 88 5 9 chr12 46763026 46763243 -97519246 - AluSc SINE Alu -93 216 1 2229 139 0 3 chr12 46764210 46764520 -97517969 + AluSx SINE Alu 1 309 -3 244 333 31 0 chr12 46764596 46764692 -97517797 + MIR SINE MIR 103 201 -61 978 138 0 0 chr12 46765598 46765736 -97516753 - AluJb SINE Alu -24 288 151 390 286 71 21 chr12 46765739 46765879 -97516610 + LTR16A LTR ERVL 1 147 -303 336 321 15 0 chr12 46765910 46766047 -97516442 + HERV16 LTR ERVL 1169 1307 -3689 5635 205 76 15 chr12 46766693 46766793 -97515696 - Cheshire DNA MER1_type -348 2072 1979 2326 82 0 7 chr12 46766793 46767122 -97515367 + AluY SINE Alu 1 311 0 5635 205 76 15 chr12 46767122 46768443 -97514046 - Cheshire DNA MER1_type -441 1979 565 1410 224 133 33 chr12 46768443 46768902 -97513587 - MLT1D LTR MaLR 0 505 1 * 1521 225 54 58 chr12 46768902 46769422 -97513067 - Cheshire DNA MER1_type -1873 547 30 607 250 50 6 chr12 46769483 46769643 -97512846 - MLT1J2 LTR MaLR -283 167 1 357 200 0 0 chr12 46770834 46770909 -97511580 - MLT1J2 LTR MaLR -24 426 352 2237 129 9 0 chr12 46771985 46772325 -97510164 - MSTA LTR MaLR 0 428 86 3663 152 14 66 chr12 46772325 46773142 -97509347 - LTR1 LTR ERV1 0 785 12 423 149 35 11 chr12 46773149 46773236 -97509253 - MSTA LTR MaLR -339 89 1 273 264 0 11 chr12 46773601 46773688 -97508801 + MER117 DNA MER1_type 81 166 -31 504 248 66 0 chr12 46773892 46774029 -97508460 - MIR SINE MIR 0 262 117 827 242 54 0 chr12 46774584 46774770 -97507719 + MER58A DNA MER1_type 2 197 -27 228 385 18 0 chr12 46775835 46775944 -97506545 + L3 LINE CR1 1043 1153 -424 206 289 74 95 chr12 46775990 46776180 -97506309 + L3 LINE CR1 1278 1463 -114 266 281 91 45 chr12 46776379 46776621 -97505868 + L1ME LINE L1 5312 5564 -557 200 216 29 39 chr12 46777162 46777264 -97505225 + (TA)n Simple_repeat Simple_repeat 1 101 0 29 60 0 0 chr12 46777500 46777550 -97504939 + AT_rich Low_complexity Low_complexity 1 50 0 988 68 95 0 chr12 46777584 46777731 -97504758 - LTR12 LTR ERV1 0 714 554 5714 145 107 115 chr12 46777731 46779456 -97503033 + pTR5 LTR ERV1 743 2438 0 3839 178 150 22 chr12 46779457 46780570 -97501919 - LTR12 LTR ERV1 -22 1523 1 576 209 104 11 chr12 46780570 46780752 -97501737 - L1ME3A LINE L1 -289 5881 5683 910 186 62 5 chr12 46780777 46780970 -97501519 + MER3 DNA MER1_type 6 209 0 405 279 66 24 chr12 46780979 46781320 -97501169 - L1ME3A LINE L1 -537 5647 5286 282 56 0 0 chr12 46781320 46781356 -97501133 + (TA)n Simple_repeat Simple_repeat 2 37 0 405 279 66 24 chr12 46781356 46781368 -97501121 - L1ME3A LINE L1 -898 5286 5276 24 32 0 0 chr12 46781401 46781432 -97501057 + AT_rich Low_complexity Low_complexity 1 31 0 364 282 48 68 chr12 46781558 46781806 -97500683 - L1ME3A LINE L1 -1299 4847 4605 708 253 151 57 chr12 46781891 46782508 -97499981 + L2 LINE L2 2567 3211 -102 249 33 0 0 chr12 46783792 46783822 -97498667 + (T)n Simple_repeat Simple_repeat 1 30 0 252 0 0 0 chr12 46784377 46784405 -97498084 + (CA)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr12 46784835 46784858 -97497631 + AT_rich Low_complexity Low_complexity 1 23 0 24 91 0 0 chr12 46785002 46785068 -97497421 + AT_rich Low_complexity Low_complexity 1 66 0 971 272 80 38 chr12 46785128 46785628 -97496861 - LTR33 LTR ERVL 0 521 1 305 346 99 40 chr12 46786753 46786921 -97495568 - L2 LINE L2 -19 3294 3137 1573 197 24 53 chr12 46786921 46787297 -97495192 + MLT1A1 LTR MaLR 1 365 0 305 346 99 40 chr12 46787297 46787481 -97495008 - L2 LINE L2 -176 3137 2921 770 294 18 13 chr12 46787715 46787943 -97494546 - MIR SINE MIR -12 250 22 720 316 109 13 chr12 46788809 46789276 -97493213 + L1ME LINE L1 42 531 -5539 5632 148 36 11 chr12 46789306 46790626 -97491863 + L1MA5 LINE L1 4954 6300 0 2057 273 55 36 chr12 46790808 46791869 -97490620 + L1ME LINE L1 536 1666 -4595 1701 120 37 91 chr12 46791869 46792219 -97490270 + MER44D DNA MER2_type 1 601 -8 1082 279 78 16 chr12 46792228 46792927 -97489562 + L1ME LINE L1 1665 2371 -3709 530 287 55 10 chr12 46792919 46793157 -97489332 + L1ME2 LINE L1 5888 6160 -2 * 398 21 0 0 chr12 46793543 46793591 -97488898 - L1PA6 LINE L1 -5 6149 6102 22 35 0 0 chr12 46793591 46793620 -97488869 + AT_rich Low_complexity Low_complexity 1 29 0 288 273 70 29 chr12 46793703 46793875 -97488614 - L1ME LINE L1 -315 5806 5628 22 0 0 0 chr12 46794035 46794057 -97488432 + AT_rich Low_complexity Low_complexity 1 22 0 627 239 94 0 chr12 46794192 46794330 -97488159 - FRAM SINE Alu -15 151 1 42 20 0 0 chr12 46794528 46794577 -97487912 + AT_rich Low_complexity Low_complexity 1 49 0 438 20 0 0 chr12 46794885 46794936 -97487553 + (TC)n Simple_repeat Simple_repeat 1 51 0 721 158 53 0 chr12 46794960 46795093 -97487396 + MSTA LTR MaLR 289 428 0 937 180 0 0 chr12 46795094 46795255 -97487234 + MER3 DNA MER1_type 49 209 0 225 281 62 16 chr12 46795287 46795351 -97487138 + L2 LINE L2 3167 3233 -39 2460 63 0 3 chr12 46795760 46796059 -97486430 - AluY SINE Alu -13 298 1 2327 15 0 0 chr12 46798799 46799060 -97483429 + AluYa5 SINE Alu 37 297 -14 201 74 0 0 chr12 46799741 46799768 -97482721 + (CA)n Simple_repeat Simple_repeat 2 28 0 1276 234 77 22 chr12 46800376 46800777 -97481712 + L1ME1 LINE L1 5740 6162 -4 21 0 0 0 chr12 46802358 46802379 -97480110 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 46802430 46802452 -97480037 + AT_rich Low_complexity Low_complexity 1 22 0 431 243 68 51 chr12 46803194 46803371 -97479118 + L2 LINE L2 1877 2056 -1258 382 353 79 41 chr12 46803429 46803797 -97478692 - L2 LINE L2 -338 2976 2595 743 289 40 18 chr12 46803831 46804056 -97478433 - MIR SINE MIR -31 231 2 268 340 62 45 chr12 46804121 46804409 -97478080 - L2 LINE L2 -787 2527 2235 23 33 0 0 chr12 46805265 46805295 -97477194 + AT_rich Low_complexity Low_complexity 1 30 0 2567 35 0 16 chr12 46805327 46805641 -97476848 + AluY SINE Alu 2 310 -1 3038 273 112 52 chr12 46806079 46807971 -97474518 - L2 LINE L2 -5 3308 1243 1523 203 107 87 chr12 46807972 46808503 -97473986 + MLT1F1 LTR MaLR 1 567 0 189 171 98 0 chr12 46808504 46808545 -97473944 - L2 LINE L2 -2069 1245 1201 249 370 12 0 chr12 46808547 46808628 -97473861 - L2 LINE L2 -2084 1230 1149 900 236 89 43 chr12 46810488 46810814 -97471675 + MLT1I LTR MaLR 1 341 -68 441 219 48 0 chr12 46812745 46812850 -97469639 - Tigger5 DNA MER2_type -4 2319 2210 234 250 0 18 chr12 46812837 46812893 -97469596 - Tigger5 DNA MER2_type -2268 55 1 * 353 279 48 39 chr12 46812903 46813007 -97469482 - L2 LINE L2 0 3272 3168 25 0 0 0 chr12 46813036 46813061 -97469428 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr12 46814505 46814528 -97467961 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 209 217 0 0 chr12 46814531 46814577 -97467912 + A-rich Low_complexity Low_complexity 1 46 0 222 359 12 53 chr12 46816422 46816592 -97465897 + L2 LINE L2 2916 3078 -194 474 272 156 42 chr12 46816673 46816838 -97465651 - L1M4 LINE L1 -1347 4799 4654 282 73 0 0 chr12 46816838 46816879 -97465610 + (CAAAA)n Simple_repeat Simple_repeat 4 44 0 474 272 156 42 chr12 46816879 46817073 -97465416 - L1M4 LINE L1 -1492 4654 4399 321 210 208 7 chr12 46817076 46817212 -97465277 - L1ME1 LINE L1 0 6334 6015 225 341 83 15 chr12 46817240 46817372 -97465117 + L2 LINE L2 3169 3309 -4 648 303 32 68 chr12 46818314 46818478 -97464011 + HAL1 LINE L1 776 944 -1563 2343 85 0 19 chr12 46818478 46818795 -97463694 + AluY SINE Alu 1 311 0 648 303 32 68 chr12 46818795 46819251 -97463238 + HAL1 LINE L1 944 1374 -1133 620 320 35 18 chr12 46819276 46819504 -97462985 - MIR SINE MIR -29 233 2 684 263 43 30 chr12 46819704 46819936 -97462553 + L2 LINE L2 1976 2210 -1104 509 204 79 73 chr12 46819978 46820190 -97462299 + MLT1C LTR MaLR 1 224 -243 463 237 9 9 chr12 46820235 46820349 -97462140 - MLT2E LTR ERVL 0 628 515 624 181 133 64 chr12 46820406 46820594 -97461895 + MLT1C LTR MaLR 267 467 0 884 281 121 18 chr12 46820601 46821033 -97461456 + L2 LINE L2 2238 2770 -544 464 283 17 73 chr12 46821073 46821250 -97461239 + MLT2E LTR ERVL 11 177 -451 241 235 148 40 chr12 46821699 46821848 -97460641 + HAL1 LINE L1 2165 2329 -178 702 240 62 0 chr12 46821873 46822065 -97460424 + MER105 DNA DNA 1 204 0 202 115 33 66 chr12 46822224 46822285 -97460204 + (ATATG)n Simple_repeat Simple_repeat 5 63 0 24 0 0 0 chr12 46822613 46822637 -97459852 + AT_rich Low_complexity Low_complexity 1 24 0 281 212 30 0 chr12 46822820 46822886 -97459603 + MER105 DNA DNA 137 204 0 212 292 62 15 chr12 46822904 46822969 -97459520 - L2 LINE L2 0 3313 3246 534 291 34 0 chr12 46824801 46824976 -97457513 + L1ME1 LINE L1 5732 5912 -209 246 209 104 0 chr12 46825580 46825647 -97456842 + L2 LINE L2 3231 3304 -9 1380 140 0 9 chr12 46825862 46826084 -97456405 + AluSg/x SINE Alu 88 307 -5 342 225 14 0 chr12 46826712 46826783 -97455706 + MLT1J2 LTR MaLR 1 72 -378 3559 171 42 8 chr12 46827058 46827764 -97454725 + L1MA10 LINE L1 4267 4996 -1150 505 122 12 0 chr12 46827809 46827891 -97454598 + L1MA10 LINE L1 5643 5725 -609 320 167 19 0 chr12 46827891 46827945 -97454544 - AluJb SINE Alu -131 171 117 750 153 0 0 chr12 46827949 46828108 -97454381 + AluSg/x SINE Alu 174 332 0 2557 196 43 43 chr12 46828108 46828719 -97453770 + L1MA10 LINE L1 5722 6332 -2 2579 20 0 0 chr12 46830499 46830797 -97451692 + L1HS LINE L1 5858 6155 0 718 143 16 0 chr12 46831120 46831246 -97451243 + L1MA4 LINE L1 6170 6297 -3 207 100 0 0 chr12 46831382 46831412 -97451077 + (CA)n Simple_repeat Simple_repeat 1 30 0 825 237 19 40 chr12 46831864 46832156 -97450333 + L1ME1 LINE L1 5889 6330 -4 284 261 87 11 chr12 46833709 46833801 -97448688 - L2 LINE L2 -4 3309 3211 301 332 201 23 chr12 46835095 46835758 -97446731 - L2 LINE L2 -938 2376 1596 4750 102 6 23 chr12 46835875 46836569 -97445920 + L1PA7 LINE L1 4 685 -5776 * 24073 90 6 2 chr12 46836566 46840837 -97441652 + L1PA7 LINE L1 2177 6465 -4 205 337 168 0 chr12 46842034 46842129 -97440360 - L2 LINE L2 -40 3232 3122 556 302 50 22 chr12 46842468 46842647 -97439842 + MER5A DNA MER1_type 1 184 -5 516 176 94 41 chr12 46842780 46842950 -97439539 - MER104 DNA MER2_type -1 179 1 208 340 0 21 chr12 46843018 46843112 -97439377 - L2 LINE L2 -263 3009 2918 262 319 5 43 chr12 46843119 46843228 -97439261 + MIR SINE MIR 12 119 -89 324 316 88 84 chr12 46843327 46843757 -97438732 - L2 LINE L2 -438 2876 2445 333 47 0 0 chr12 46844039 46844082 -97438407 + (CA)n Simple_repeat Simple_repeat 2 44 0 312 321 53 15 chr12 46844151 46844282 -97438207 + MIR SINE MIR 33 168 -94 2151 108 14 0 chr12 46844336 46844624 -97437865 - AluSg SINE Alu -18 292 1 271 163 33 22 chr12 46846224 46846316 -97436173 + (TA)n Simple_repeat Simple_repeat 1 93 0 4456 115 0 0 chr12 46846391 46847028 -97435461 - L1PA13 LINE L1 -2 6161 5525 23 0 0 0 chr12 46848218 46848241 -97434248 + AT_rich Low_complexity Low_complexity 1 23 0 387 313 25 31 chr12 46848976 46849136 -97433353 + L2 LINE L2 3155 3313 0 180 111 0 0 chr12 46849545 46849572 -97432917 + (TC)n Simple_repeat Simple_repeat 1 27 0 1526 198 7 30 chr12 46849658 46849961 -97432528 - AluJo SINE Alu -14 298 3 441 273 96 29 chr12 46851208 46851417 -97431072 + HAL1b LINE L1 90 312 -1036 722 140 7 29 chr12 46851568 46851704 -97430785 - AluSg/x SINE Alu -2 307 175 435 151 41 0 chr12 46851707 46851780 -97430709 - FLAM_A SINE Alu -66 76 1 23 54 0 0 chr12 46851854 46851891 -97430598 + AT_rich Low_complexity Low_complexity 1 37 0 332 248 60 27 chr12 46851910 46852059 -97430430 + HAL1b LINE L1 860 1013 -335 418 332 53 24 chr12 46852233 46852441 -97430048 + L2 LINE L2 2919 3132 -181 589 250 17 50 chr12 46852527 46852707 -97429782 + L2 LINE L2 3140 3313 0 27 0 0 0 chr12 46853003 46853030 -97429459 + AT_rich Low_complexity Low_complexity 1 27 0 196 322 0 0 chr12 46853182 46853241 -97429248 + MIR SINE MIR 194 252 -10 * 763 311 73 11 chr12 46853216 46853680 -97428809 + L2 LINE L2 2533 3033 -239 257 250 77 29 chr12 46853839 46853943 -97428546 + L2 LINE L2 3134 3242 -30 186 208 0 0 chr12 46853955 46854003 -97428486 + (CAT)n Simple_repeat Simple_repeat 2 49 0 7764 16 0 0 chr12 46854063 46854980 -97427509 - L1PA3 LINE L1 0 6155 5235 2468 61 3 16 chr12 46854980 46855292 -97427197 - AluY SINE Alu -3 308 1 196 409 98 28 chr12 46855413 46855628 -97426861 + L2 LINE L2 3040 3269 -3 182 194 0 0 chr12 46857048 46857084 -97425405 + L2 LINE L2 2217 2252 -1062 289 363 16 47 chr12 46857250 46857440 -97425049 + MIR SINE MIR 18 201 -61 2072 117 17 3 chr12 46857949 46858249 -97424240 + AluSx SINE Alu 1 304 -8 480 253 146 26 chr12 46859850 46859978 -97422511 - L2 LINE L2 -2460 854 743 2194 162 28 10 chr12 46859978 46860367 -97422122 + MSTD LTR MaLR 1 396 0 480 253 146 26 chr12 46860367 46860471 -97422018 - L2 LINE L2 -2571 743 594 282 295 164 63 chr12 46860493 46860761 -97421728 + L2 LINE L2 3019 3313 0 1835 148 0 3 chr12 46860999 46861307 -97421182 - AluJb SINE Alu 0 307 1 22 0 0 0 chr12 46862274 46862296 -97420193 + AT_rich Low_complexity Low_complexity 1 22 0 603 283 84 65 chr12 46862325 46862553 -97419936 + L1MC4a LINE L1 5520 5759 -2049 1492 103 0 0 chr12 46862553 46862748 -97419741 + AluSq SINE Alu 1 195 -118 603 283 84 65 chr12 46862748 46862890 -97419599 + L1MC4a LINE L1 5759 5897 -1911 736 201 50 0 chr12 46862979 46863118 -97419371 + MER20 DNA MER1_type 40 185 -34 270 148 0 0 chr12 46863404 46863458 -97419031 + (TA)n Simple_repeat Simple_repeat 2 55 0 204 158 0 0 chr12 46863518 46863556 -97418933 + (TA)n Simple_repeat Simple_repeat 1 38 0 27 81 0 0 chr12 46863630 46863692 -97418797 + AT_rich Low_complexity Low_complexity 1 62 0 210 314 167 10 chr12 46864027 46864129 -97418360 + L2 LINE L2 3190 3307 -6 2344 85 0 0 chr12 46864224 46864518 -97417971 + AluY SINE Alu 1 294 -17 216 0 0 0 chr12 46864518 46864542 -97417947 + (TA)n Simple_repeat Simple_repeat 2 25 0 246 296 44 82 chr12 46864795 46864930 -97417559 - L3b LINE CR1 -8 1575 1446 2355 50 0 63 chr12 46865103 46865420 -97417069 + AluY SINE Alu 1 297 -14 1033 151 13 54 chr12 46865906 46866145 -97416344 - L1MB4 LINE L1 -1 6179 5951 791 276 38 17 chr12 46866178 46866417 -97416072 - MIR SINE MIR -11 251 8 1870 95 52 4 chr12 46866618 46866897 -97415592 - AluSc SINE Alu 0 306 16 27 81 0 0 chr12 46867400 46867462 -97415027 + AT_rich Low_complexity Low_complexity 1 62 0 6382 137 16 9 chr12 46867903 46869143 -97413346 + L1MA5 LINE L1 5041 6294 -6 731 276 55 17 chr12 46869287 46869526 -97412963 + MIR SINE MIR 2 247 -15 684 204 15 15 chr12 46869957 46870094 -97412395 - MER69 DNA AcHobo -2388 138 2 1871 36 0 0 chr12 46870780 46871002 -97411487 - L1P3 LINE L1 -448 5706 5485 629 124 0 0 chr12 46870994 46871091 -97411398 - L1P LINE L1 -1383 4763 4667 * 3275 59 2 20 chr12 46871091 46871531 -97410958 + L1PA7 LINE L1 5717 6149 -5 2363 63 0 48 chr12 46872659 46872974 -97409515 - AluY SINE Alu -11 300 1 381 283 80 27 chr12 46873547 46873722 -97408767 + MIR SINE MIR 3 185 -64 553 277 14 79 chr12 46873736 46873845 -97408644 - MIR SINE MIR -1 261 147 614 153 59 17 chr12 46873845 46873963 -97408526 - FLAM_C SINE Alu -10 123 1 553 277 14 79 chr12 46873963 46874131 -97408358 - MIR SINE MIR -115 147 2 858 313 107 42 chr12 46874307 46874895 -97407594 - L3 LINE CR1 -154 1423 798 252 292 106 80 chr12 46874886 46874999 -97407490 - L2 LINE L2 -16 3256 3141 * 326 284 92 35 chr12 46875143 46875284 -97407205 - L3 LINE CR1 -742 835 687 180 0 0 0 chr12 46875397 46875417 -97407072 + (A)n Simple_repeat Simple_repeat 1 20 0 1113 269 103 64 chr12 46876025 46876088 -97406401 + L1MEd LINE L1 319 378 -2112 270 0 0 0 chr12 46876088 46876118 -97406371 + (CA)n Simple_repeat Simple_repeat 2 31 0 243 0 0 0 chr12 46876117 46876144 -97406345 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 1113 269 103 64 chr12 46876118 46877194 -97405295 + L1MEd LINE L1 378 1558 -932 2146 73 42 0 chr12 46877194 46877361 -97405128 - AluY SINE Alu -11 300 115 464 0 0 18 chr12 46877361 46877418 -97405071 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 2146 73 42 0 chr12 46877418 46877538 -97404951 - AluY SINE Alu -196 115 1 1113 269 103 64 chr12 46877538 46877562 -97404927 + L1MEd LINE L1 1558 1580 -910 234 119 24 0 chr12 46877983 46878025 -97404464 + L1MC/D LINE L1 5844 5886 -1922 27 92 0 0 chr12 46878079 46878155 -97404334 + AT_rich Low_complexity Low_complexity 1 76 0 26 0 0 0 chr12 46878270 46878296 -97404193 + AT_rich Low_complexity Low_complexity 1 26 0 23 68 0 0 chr12 46878598 46878642 -97403847 + AT_rich Low_complexity Low_complexity 1 44 0 669 329 46 29 chr12 46878924 46879164 -97403325 - MIR SINE MIR -12 250 7 286 213 25 16 chr12 46881402 46881524 -97400965 + GA-rich Low_complexity Low_complexity 3 125 0 240 319 138 25 chr12 46881524 46881684 -97400805 + MIR3 SINE MIR 15 192 -16 331 361 57 0 chr12 46881757 46881879 -97400610 - L2 LINE L2 0 3272 3144 330 358 101 14 chr12 46881877 46882095 -97400394 - L2 LINE L2 -434 2880 2644 * 277 315 33 22 chr12 46882571 46882663 -97399826 - MIR SINE MIR -145 117 25 186 310 0 17 chr12 46883149 46883207 -97399282 - MER5A DNA MER1_type -84 105 49 * 197 250 0 118 chr12 46883177 46883253 -97399236 + MER5A DNA MER1_type 123 189 0 27 49 0 0 chr12 46883822 46883863 -97398626 + AT_rich Low_complexity Low_complexity 1 41 0 958 196 133 0 chr12 46886039 46886125 -97396364 - MER44D DNA MER2_type -1884 603 530 264 59 0 0 chr12 46886125 46886159 -97396330 + (TA)n Simple_repeat Simple_repeat 2 35 0 958 196 133 0 chr12 46886159 46886297 -97396192 - MER44D DNA MER2_type -1957 530 294 195 69 0 0 chr12 46886344 46886373 -97396116 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 575 175 10 0 chr12 46886382 46886479 -97396010 - AluJ/FLAM SINE Alu -212 100 3 1805 196 3 3 chr12 46886481 46886792 -97395697 - MER44D DNA MER2_type -394 311 1 192 40 0 0 chr12 46887473 46887498 -97394991 + (A)n Simple_repeat Simple_repeat 1 25 0 211 381 102 19 chr12 46887561 46888039 -97394450 - L2 LINE L2 -2256 1058 541 391 303 19 39 chr12 46888875 46889030 -97393459 - MIR SINE MIR -63 199 48 232 279 51 89 chr12 46890266 46890424 -97392065 + L2 LINE L2 2924 3075 -197 500 288 198 5 chr12 46892592 46892804 -97389685 - MIR SINE MIR 0 262 10 200 61 61 0 chr12 46894303 46894336 -97388153 + CT-rich Low_complexity Low_complexity 1 35 0 2764 13 0 16 chr12 46894638 46894952 -97387537 + AluYa5 SINE Alu 1 309 -2 682 291 10 34 chr12 46896029 46896235 -97386254 - MIR SINE MIR -1 261 61 396 158 0 0 chr12 46896825 46896901 -97385588 + GA-rich Low_complexity Low_complexity 2 77 0 207 180 20 60 chr12 46896933 46896983 -97385506 - MIR SINE MIR -18 244 197 214 337 47 0 chr12 46897225 46897311 -97385178 - L2 LINE L2 -832 2482 2393 207 300 14 29 chr12 46897542 46897612 -97384877 + L2 LINE L2 3245 3313 0 320 309 57 79 chr12 46897860 46898125 -97384364 + L2 LINE L2 2425 2683 -631 232 324 53 53 chr12 46898354 46898524 -97383965 + L2 LINE L2 2909 3078 -194 712 247 0 0 chr12 46898573 46898719 -97383770 + MIR SINE MIR 13 158 -104 526 237 101 0 chr12 46898725 46898864 -97383625 - MER46C DNA MER2_type -107 231 79 244 239 102 0 chr12 46899087 46899175 -97383314 + MIR SINE MIR 164 260 -2 276 260 0 14 chr12 46900429 46900513 -97381976 + (TATG)n Simple_repeat Simple_repeat 1 82 0 2354 72 3 0 chr12 46901075 46901381 -97381108 + L1PA7 LINE L1 5848 6154 0 420 71 0 0 chr12 46902211 46902267 -97380222 + (TA)n Simple_repeat Simple_repeat 2 57 0 618 277 245 33 chr12 46903369 46903863 -97378626 + L2 LINE L2 2660 3264 -49 301 271 28 56 chr12 46903949 46904056 -97378433 - MIR SINE MIR -75 133 30 24 0 0 0 chr12 46906526 46906550 -97375939 + AT_rich Low_complexity Low_complexity 1 24 0 524 281 86 36 chr12 46907428 46907649 -97374840 - MIR SINE MIR -13 249 18 309 303 138 50 chr12 46907899 46908117 -97374372 + L3 LINE CR1 1091 1327 -250 215 79 26 0 chr12 46908453 46908491 -97373998 + (TA)n Simple_repeat Simple_repeat 1 39 0 338 211 24 78 chr12 46908556 46908722 -97373767 + L1M4 LINE L1 2872 3028 -3118 1018 187 25 0 chr12 46908724 46908927 -97373562 + L1PA16 LINE L1 5950 6157 -9 2104 254 38 2 chr12 46908975 46909606 -97372883 + L1M4 LINE L1 3543 4196 -1950 413 367 28 11 chr12 46909653 46909830 -97372659 + MIR SINE MIR 63 242 -20 207 171 0 0 chr12 46910291 46910326 -97372163 + (CA)n Simple_repeat Simple_repeat 2 36 0 5130 70 1 5 chr12 46911404 46912078 -97370411 - L1PA7 LINE L1 0 6154 5483 942 68 0 0 chr12 46912082 46912200 -97370289 - L1PA7 LINE L1 -226 5928 5811 * 16013 83 17 0 chr12 46912190 46914544 -97367945 - L1PA7 LINE L1 -691 5481 3088 498 360 68 31 chr12 46914557 46914945 -97367544 - L2 LINE L2 -8 3264 2865 1283 179 73 0 chr12 46916092 46916394 -97366095 - MER33 DNA MER1_type 0 324 1 677 350 44 18 chr12 46916850 46917233 -97365256 + L2 LINE L2 2550 2942 -372 482 295 62 33 chr12 46917450 46917660 -97364829 - MIR SINE MIR -13 249 34 204 231 0 0 chr12 46918312 46918351 -97364138 + A-rich Low_complexity Low_complexity 2 40 0 206 319 15 108 chr12 46918832 46918923 -97363566 + MIR SINE MIR 20 83 -179 2078 137 3 3 chr12 46918923 46919230 -97363259 - AluSx SINE Alu -5 307 1 206 319 15 108 chr12 46919230 46919342 -97363147 + MIR SINE MIR 83 204 -58 1132 192 8 31 chr12 46919621 46919833 -97362656 + L1MB1 LINE L1 5913 6119 -49 2170 106 3 7 chr12 46919833 46920136 -97362353 + AluSx SINE Alu 1 302 -10 1132 192 8 31 chr12 46920136 46920183 -97362306 + L1MB1 LINE L1 6119 6166 -2 286 284 71 13 chr12 46920269 46920424 -97362065 + L1ME LINE L1 5503 5666 -455 546 57 0 0 chr12 46921816 46921886 -97360603 + (TA)n Simple_repeat Simple_repeat 1 70 0 342 368 144 21 chr12 46922220 46922805 -97359684 - L2 LINE L2 -236 3036 2381 318 337 71 12 chr12 46922886 46923055 -97359434 - MIR SINE MIR -17 245 67 221 326 137 0 chr12 46923257 46923352 -97359137 + L2 LINE L2 3133 3240 -32 715 272 41 10 chr12 46923382 46923577 -97358912 - MIR SINE MIR -32 230 30 1674 183 42 30 chr12 46923599 46923933 -97358556 - MER44D DNA MER2_type -1 608 1 605 269 29 17 chr12 46924092 46924267 -97358222 + MIR SINE MIR 64 240 -22 321 323 0 0 chr12 46924578 46924674 -97357815 + MIR SINE MIR 53 148 -114 198 0 0 0 chr12 46925946 46925968 -97356521 + (TA)n Simple_repeat Simple_repeat 2 23 0 2283 79 41 0 chr12 46925968 46926136 -97356353 - AluSx SINE Alu -9 303 117 387 0 0 0 chr12 46926136 46926179 -97356310 + (TG)n Simple_repeat Simple_repeat 2 44 0 2283 79 41 0 chr12 46926179 46926301 -97356188 - AluSx SINE Alu -195 117 1 282 116 0 0 chr12 46926428 46926471 -97356018 + (TCCC)n Simple_repeat Simple_repeat 3 45 0 191 256 85 49 chr12 46927007 46927089 -97355400 - MIR SINE MIR -111 151 67 1929 142 17 7 chr12 46927534 46927829 -97354660 - AluSx SINE Alu -14 298 1 1312 219 16 60 chr12 46927833 46927984 -97354505 + MLT1A2 LTR MaLR 24 180 -194 300 27 0 0 chr12 46927984 46928021 -97354468 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 1312 219 16 60 chr12 46928021 46928179 -97354310 + MLT1A2 LTR MaLR 180 317 -57 1660 135 135 23 chr12 46928179 46928482 -97354007 + MER1B DNA MER1_type 1 337 0 1312 219 16 60 chr12 46928482 46928536 -97353953 + MLT1A2 LTR MaLR 317 372 -2 2054 188 82 17 chr12 46929912 46930386 -97352103 - MLT1D LTR MaLR 0 505 1 649 280 46 23 chr12 46930395 46930613 -97351876 - MIR SINE MIR 0 262 40 649 248 0 20 chr12 46931649 46931802 -97350687 + MLT1E LTR MaLR 1 150 -443 21 0 0 0 chr12 46934229 46934250 -97348239 + AT_rich Low_complexity Low_complexity 1 21 0 5813 49 3 0 chr12 46934718 46935432 -97347057 - L1PA7 LINE L1 -2 6152 5437 8053 82 10 9 chr12 46935432 46935886 -97346603 + L1P LINE L1 4242 4694 -1452 1921 87 0 4 chr12 46935886 46936139 -97346350 + AluY SINE Alu 58 309 -2 8053 82 10 9 chr12 46936139 46936844 -97345645 + L1P LINE L1 4694 5402 -744 333 138 12 100 chr12 46937492 46937572 -97344917 - MER20 DNA MER1_type 0 219 147 607 243 21 14 chr12 46937693 46937837 -97344652 - MER20 DNA MER1_type -73 146 2 2449 213 84 26 chr12 46938073 46938767 -97343722 + MER50 LTR ERV1 1 734 0 277 235 42 12 chr12 46939042 46939209 -97343280 + CT-rich Low_complexity Low_complexity 1 172 0 510 345 31 16 chr12 46939613 46939804 -97342685 + MIR3 SINE MIR 4 197 -11 279 0 0 0 chr12 46942064 46942095 -97340394 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 215 304 25 13 chr12 46943871 46943950 -97338539 - MIR3 SINE MIR -18 190 111 192 291 93 101 chr12 46944026 46944273 -97338216 + L2 LINE L2 2809 3053 -219 25 0 0 0 chr12 46944345 46944370 -97338119 + AT_rich Low_complexity Low_complexity 1 25 0 261 209 0 45 chr12 46944594 46944655 -97337834 - MER58A DNA MER1_type 0 224 167 392 271 0 74 chr12 46944655 46944777 -97337712 - MER58A DNA MER1_type 0 113 1 10248 227 41 40 chr12 46944817 46949064 -97333425 + L1M2 LINE L1 2 4255 -2593 2023 139 12 38 chr12 46949421 46949766 -97332723 + MER1B DNA MER1_type 1 336 -1 188 268 126 63 chr12 46950656 46950783 -97331706 + L3 LINE CR1 1286 1420 -157 245 245 0 98 chr12 46951062 46951164 -97331325 - MER103 DNA DNA -2 164 73 259 343 0 0 chr12 46951185 46951255 -97331234 - L2 LINE L2 0 3313 3244 190 231 21 66 chr12 46952070 46952226 -97330263 + L2 LINE L2 3119 3309 -4 364 230 58 0 chr12 46952808 46952895 -97329594 - MIR3 SINE MIR -8 200 109 272 384 79 0 chr12 46952881 46953045 -97329444 - L2 LINE L2 -452 2862 2686 * 22 0 0 0 chr12 46953551 46953573 -97328916 + AT_rich Low_complexity Low_complexity 1 22 0 380 385 94 50 chr12 46954085 46954469 -97328020 - L2 LINE L2 -16 3256 2856 801 319 136 26 chr12 46954760 46955458 -97327031 - L2 LINE L2 -564 2750 1976 676 268 114 5 chr12 46955715 46955935 -97326554 + LTR67 LTR ERVL 314 557 0 791 355 102 14 chr12 46955935 46956664 -97325825 - L2 LINE L2 -1280 2034 1242 30 59 0 0 chr12 46957296 46957347 -97325142 + AT_rich Low_complexity Low_complexity 1 51 0 35 0 0 0 chr12 46958268 46958303 -97324186 + AT_rich Low_complexity Low_complexity 1 35 0 227 54 27 0 chr12 46958618 46958655 -97323834 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 7637 27 0 0 chr12 46958656 46959573 -97322916 - L1PA3 LINE L1 -5 6150 5234 2373 82 3 16 chr12 46959577 46959883 -97322606 - AluY SINE Alu -9 302 1 182 194 0 0 chr12 46961637 46961673 -97320816 + L2 LINE L2 2217 2252 -1062 289 344 26 53 chr12 46961839 46962028 -97320461 + MIR SINE MIR 18 201 -61 2072 117 17 3 chr12 46962537 46962837 -97319652 + AluSx SINE Alu 1 304 -8 838 289 77 16 chr12 46964242 46964553 -97317936 - L2 LINE L2 -1955 1359 1030 41890 40 25 1 chr12 46964763 46970504 -97311985 - L1PA3 LINE L1 -275 5880 1 22 0 0 0 chr12 46970948 46970970 -97311519 + AT_rich Low_complexity Low_complexity 1 22 0 443 299 86 20 chr12 46971493 46971690 -97310799 - MIR SINE MIR -2 260 51 1313 140 4 48 chr12 46972740 46972969 -97309520 + MER20 DNA MER1_type 1 219 0 424 305 110 6 chr12 46973121 46973285 -97309204 - MER5A DNA MER1_type -1 188 8 516 245 170 14 chr12 46973444 46973591 -97308898 - MER5A DNA MER1_type -9 180 11 462 259 22 30 chr12 46973734 46973869 -97308620 + L2 LINE L2 3180 3313 0 14124 146 29 4 chr12 46974173 46976532 -97305957 + Tigger1 DNA MER2_type 1 2418 0 2193 185 88 29 chr12 46977131 46977580 -97304909 + MLT2B1 LTR ERVL 1 483 -37 405 39 0 0 chr12 46977580 46977631 -97304858 + (CA)n Simple_repeat Simple_repeat 2 52 0 2193 185 88 29 chr12 46977631 46977672 -97304817 + MLT2B1 LTR ERVL 483 520 0 615 200 12 18 chr12 46978103 46978273 -97304216 + GA-rich Low_complexity Low_complexity 3 171 0 258 26 0 0 chr12 46978351 46978389 -97304100 + AluY SINE Alu 264 301 -1 831 200 7 0 chr12 46978497 46978647 -97303842 + AluJo SINE Alu 3 153 -159 1176 154 0 81 chr12 46978844 46979078 -97303411 + AluJb SINE Alu 83 297 -15 3404 153 15 21 chr12 46980052 46980661 -97301828 - MER6A DNA MER2_type 0 605 1 2254 161 14 77 chr12 46980872 46981369 -97301120 - MLT1C LTR MaLR 0 467 2 1019 333 180 26 chr12 46982395 46983766 -97298723 + L2 LINE L2 1705 3272 0 642 316 127 41 chr12 46984436 46985285 -97297204 + L2 LINE L2 2395 3313 0 201 340 56 28 chr12 46986885 46987029 -97295460 - L3b LINE CR1 -187 1396 1249 2135 117 10 0 chr12 46987618 46987916 -97294573 + AluSq SINE Alu 1 301 -12 414 286 53 41 chr12 46989362 46989533 -97292956 + MIR SINE MIR 34 206 -56 305 265 124 32 chr12 46990272 46990457 -97292032 + MLT1K LTR MaLR 374 575 -13 378 308 51 0 chr12 46991613 46991730 -97290759 + MER5B DNA MER1_type 1 123 -55 1010 227 92 59 chr12 46992032 46992511 -97289978 + MLT1H1 LTR MaLR 9 548 -7 655 216 142 25 chr12 46992513 46992675 -97289814 + MER5A DNA MER1_type 9 189 0 362 351 33 33 chr12 46993250 46993401 -97289088 - L2 LINE L2 -18 3254 3104 475 335 141 24 chr12 46993401 46993649 -97288840 - L3 LINE CR1 -8 1569 1293 351 0 0 0 chr12 46994342 46994381 -97288108 + (CA)n Simple_repeat Simple_repeat 2 40 0 312 83 0 0 chr12 46994381 46994429 -97288060 + (GA)n Simple_repeat Simple_repeat 1 48 0 21 36 0 0 chr12 46995914 46995942 -97286547 + AT_rich Low_complexity Low_complexity 1 28 0 601 259 6 11 chr12 46996688 46996862 -97285627 + MER69A DNA AcHobo 3 175 -2 785 181 0 0 chr12 46997131 46997264 -97285225 - FLAM_C SINE Alu 0 133 1 24 0 0 0 chr12 46997376 46997400 -97285089 + AT_rich Low_complexity Low_complexity 1 24 0 352 352 106 0 chr12 46998494 46998636 -97283853 - L2 LINE L2 0 3272 3116 789 316 71 27 chr12 46998730 46999097 -97283392 - LTR33 LTR ERVL -95 426 44 250 319 55 0 chr12 47000028 47000119 -97282370 + MER91C DNA MER1_type 37 132 -8 21 36 0 0 chr12 47000244 47000272 -97282217 + AT_rich Low_complexity Low_complexity 1 28 0 1726 157 36 0 chr12 47003345 47003625 -97278864 - AluJb SINE Alu -18 294 5 205 333 56 65 chr12 47003644 47003752 -97278737 - L2 LINE L2 -57 3215 3109 447 269 96 54 chr12 47004010 47004070 -97278419 + MER5B DNA MER1_type 4 60 -118 2383 64 0 10 chr12 47004070 47004367 -97278122 + AluY SINE Alu 1 294 -17 447 269 96 54 chr12 47004367 47004473 -97278016 + MER5B DNA MER1_type 60 177 -1 3655 172 5 3 chr12 47004930 47005569 -97276920 + L1PA16 LINE L1 5518 6157 -9 4844 161 6 20 chr12 47005573 47006523 -97275966 + L1PA14 LINE L1 4295 5231 -915 4772 91 9 1 chr12 47006523 47007172 -97275317 + L1PA14 LINE L1 5478 6152 -9 22 0 0 0 chr12 47007279 47007301 -97275188 + AT_rich Low_complexity Low_complexity 1 22 0 442 293 179 0 chr12 47008150 47008290 -97274199 - MER5A DNA MER1_type -16 173 9 518 274 51 34 chr12 47008306 47008481 -97274008 + MER5B DNA MER1_type 1 178 0 212 219 0 27 chr12 47008674 47008747 -97273742 + GA-rich Low_complexity Low_complexity 2 72 0 2618 256 50 45 chr12 47009250 47010858 -97271631 + L1MB1 LINE L1 842 2599 -3964 237 162 0 0 chr12 47010907 47010944 -97271545 - Alu SINE Alu -264 37 1 1282 128 36 9 chr12 47010944 47011163 -97271326 - AluSg/x SINE Alu -1 311 87 11401 208 35 11 chr12 47011168 47014893 -97267596 + L1MB1 LINE L1 2584 6404 0 305 129 0 16 chr12 47014893 47014955 -97267534 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 1175 277 116 19 chr12 47014988 47015617 -97266872 - L1MDa LINE L1 -3315 3225 2536 233 311 76 23 chr12 47016004 47016175 -97266314 - L1MDa LINE L1 -873 2028 1819 30 59 0 0 chr12 47016907 47016958 -97265531 + AT_rich Low_complexity Low_complexity 1 51 0 2546 42 3 0 chr12 47017165 47017472 -97265017 - AluY SINE Alu -3 308 1 25 99 0 0 chr12 47017859 47017940 -97264549 + AT_rich Low_complexity Low_complexity 1 81 0 34 55 0 0 chr12 47018038 47018093 -97264396 + AT_rich Low_complexity Low_complexity 1 55 0 27 103 0 0 chr12 47018191 47018288 -97264201 + AT_rich Low_complexity Low_complexity 1 97 0 195 301 110 96 chr12 47019203 47019422 -97263067 + L2 LINE L2 3032 3253 -19 3299 131 37 35 chr12 47019438 47020062 -97262427 + L1MA9 LINE L1 5615 6239 -73 21 0 0 0 chr12 47020062 47020083 -97262406 + AT_rich Low_complexity Low_complexity 1 21 0 1107 224 36 63 chr12 47020593 47020772 -97261717 + MER58B DNA MER1_type 1 168 -2252 1947 148 3 0 chr12 47020772 47021077 -97261412 + AluSx SINE Alu 1 306 -6 1107 224 36 63 chr12 47021077 47021232 -97261257 + MER58B DNA MER1_type 168 326 -15 506 266 8 0 chr12 47021268 47021392 -97261097 + MLT1L LTR MaLR 152 276 -339 302 277 18 27 chr12 47021580 47021692 -97260797 + MLT1L LTR MaLR 505 615 0 271 216 0 0 chr12 47022113 47022164 -97260325 - MIR SINE MIR -1 261 211 1295 160 4 44 chr12 47022168 47022418 -97260071 + Tigger2a DNA MER2_type 1 240 -194 43887 37 3 1 chr12 47022481 47028641 -97253848 + L1PA4 LINE L1 1 6170 0 869 224 22 0 chr12 47028641 47028820 -97253669 + Tigger2a DNA MER2_type 262 444 0 1588 106 18 0 chr12 47034154 47034380 -97248109 + MER30 DNA MER1_type 1 230 0 245 304 49 29 chr12 47034725 47034827 -97247662 - MIR SINE MIR -126 136 33 676 256 192 40 chr12 47035239 47035693 -97246796 + L2 LINE L2 2794 3313 0 294 221 37 147 chr12 47035929 47036065 -97246424 + MIR SINE MIR 142 262 0 1909 336 117 48 chr12 47037303 47039835 -97242654 + L2 LINE L2 181 2887 -427 292 292 62 18 chr12 47039887 47040000 -97242489 + L1ME LINE L1 5482 5599 -522 215 114 23 0 chr12 47040345 47040389 -97242100 + (CA)n Simple_repeat Simple_repeat 2 46 0 291 319 66 11 chr12 47040885 47040976 -97241513 - L2 LINE L2 -16 3297 3202 396 260 153 27 chr12 47041189 47041339 -97241150 + MLT1L LTR MaLR 379 547 -2 209 351 117 50 chr12 47041351 47041873 -97240616 + L2 LINE L2 299 855 -2459 26 64 0 0 chr12 47041897 47041944 -97240545 + AT_rich Low_complexity Low_complexity 1 47 0 425 294 79 56 chr12 47042067 47042407 -97240082 + L1MC4a LINE L1 4644 4991 -1155 21 0 0 0 chr12 47042415 47042436 -97240053 + AT_rich Low_complexity Low_complexity 1 21 0 2105 94 3 36 chr12 47042647 47042977 -97239512 + AluSp SINE Alu 1 313 0 3409 147 29 27 chr12 47042978 47043605 -97238884 + L1PB4 LINE L1 5526 6153 -3 1131 260 44 29 chr12 47043681 47044066 -97238423 + L2 LINE L2 2234 2624 -690 198 365 40 8 chr12 47044232 47044358 -97238131 + L2 LINE L2 2930 3059 -213 216 0 0 0 chr12 47045053 47045077 -97237412 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 315 280 30 10 chr12 47046202 47046302 -97236187 + MIR SINE MIR 43 144 -118 494 281 157 0 chr12 47046497 47046650 -97235839 + MER5A DNA MER1_type 13 189 0 23 33 0 0 chr12 47047298 47047328 -97235161 + AT_rich Low_complexity Low_complexity 1 30 0 1484 144 148 0 chr12 47047410 47047673 -97234816 + AluSx SINE Alu 1 302 0 23 33 0 0 chr12 47048574 47048604 -97233885 + AT_rich Low_complexity Low_complexity 1 30 0 508 269 130 50 chr12 47049003 47049326 -97233163 + L1MC4a LINE L1 5552 5814 -307 21 36 0 0 chr12 47049881 47049909 -97232580 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 47050870 47050891 -97231598 + AT_rich Low_complexity Low_complexity 1 21 0 1217 220 32 125 chr12 47050898 47051489 -97231000 + L1ME3A LINE L1 5371 5906 -264 202 276 58 23 chr12 47051606 47051693 -97230796 + MIR SINE MIR 74 163 -99 876 212 16 11 chr12 47051843 47052027 -97230462 - MIR SINE MIR -41 221 37 186 103 0 0 chr12 47053839 47053868 -97228621 + (CA)n Simple_repeat Simple_repeat 2 30 0 2337 70 0 3 chr12 47054762 47055062 -97227427 + AluY SINE Alu 1 299 -12 243 218 0 0 chr12 47056957 47057012 -97225477 + (CACG)n Simple_repeat Simple_repeat 1 55 0 23 0 0 0 chr12 47058497 47058520 -97223969 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr12 47059845 47059874 -97222615 + AT_rich Low_complexity Low_complexity 1 29 0 378 323 61 0 chr12 47060159 47060258 -97222231 + MER91C DNA MER1_type 1 105 -35 280 319 33 0 chr12 47060416 47060507 -97221982 + MIR SINE MIR 59 152 -110 263 311 22 11 chr12 47060802 47060892 -97221597 + MIR3 SINE MIR 107 197 -11 8486 232 61 34 chr12 47061823 47066197 -97216292 + L1ME4a LINE L1 18 4658 -1887 12517 93 9 1 chr12 47066197 47068790 -97213699 + L1PA8 LINE L1 3565 6168 -4 8486 232 61 34 chr12 47068790 47069864 -97212625 + L1ME4a LINE L1 4658 5701 -844 12498 161 126 8 chr12 47069884 47072629 -97209860 + L1PBa LINE L1 6 3074 -3788 258 32 0 0 chr12 47072764 47072795 -97209694 + (TA)n Simple_repeat Simple_repeat 2 32 0 241 49 0 0 chr12 47072796 47072837 -97209652 - LTR66 LTR ERVL -172 438 398 219 69 0 0 chr12 47072837 47072866 -97209623 + (CA)n Simple_repeat Simple_repeat 2 30 0 297 0 0 0 chr12 47072882 47072915 -97209574 + (TA)n Simple_repeat Simple_repeat 2 34 0 1858 121 0 0 chr12 47072915 47073188 -97209301 + L1PB1 LINE L1 5782 6054 -97 1969 274 120 52 chr12 47073194 47074159 -97208330 - L2 LINE L2 -690 2624 1594 699 298 119 24 chr12 47074389 47074852 -97207637 + L1ME4a LINE L1 5852 6358 -157 193 297 142 26 chr12 47075320 47075475 -97207014 + MIR SINE MIR 90 262 0 506 292 128 22 chr12 47075785 47076011 -97206478 + MIR SINE MIR 2 251 -11 405 256 301 10 chr12 47077019 47077218 -97205271 + MIR SINE MIR 6 262 0 463 295 107 37 chr12 47077663 47077907 -97204582 + MIR SINE MIR 1 261 -1 297 294 151 8 chr12 47078045 47078171 -97204318 - L3 LINE CR1 -73 1504 1361 681 259 84 0 chr12 47079942 47080239 -97202250 + L1M4 LINE L1 4166 4487 -1659 619 282 115 34 chr12 47080246 47080629 -97201860 + L1M4 LINE L1 4542 4955 -1191 2269 103 0 6 chr12 47080645 47080956 -97201533 - AluSc SINE Alu 0 309 1 781 285 47 4 chr12 47083201 47083436 -97199053 + MIR SINE MIR 8 252 -10 331 283 57 0 chr12 47083534 47083640 -97198849 - L2 LINE L2 -2 3311 3200 1652 292 117 7 chr12 47084539 47085303 -97197186 + L1MC4 LINE L1 7187 8034 -8 22 0 0 0 chr12 47085590 47085612 -97196877 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 47086281 47086302 -97196187 + AT_rich Low_complexity Low_complexity 1 21 0 517 271 107 29 chr12 47086683 47087133 -97195356 + L1MC/D LINE L1 4350 4834 -1312 374 249 156 29 chr12 47087905 47088157 -97194332 + L1MC/D LINE L1 5316 5406 -758 227 125 167 0 chr12 47088505 47088553 -97193936 + L1 LINE L1 4774 4829 -1317 22 35 0 0 chr12 47088554 47088583 -97193906 + AT_rich Low_complexity Low_complexity 1 29 0 240 35 0 0 chr12 47089030 47089059 -97193430 + (CA)n Simple_repeat Simple_repeat 2 30 0 22 80 0 0 chr12 47090256 47090306 -97192183 + AT_rich Low_complexity Low_complexity 1 50 0 467 186 186 43 chr12 47092249 47092389 -97190100 + MER63A DNA MER1_type 51 210 0 2747 82 5 0 chr12 47092675 47093055 -97189434 + L1PA8 LINE L1 5791 6172 0 244 308 88 11 chr12 47093147 47093238 -97189251 - L2 LINE L2 -211 3061 2964 273 322 129 0 chr12 47094569 47094740 -97187749 + MIR SINE MIR 2 194 -68 498 304 7 7 chr12 47094774 47094912 -97187577 - MIR SINE MIR -123 139 2 362 203 13 13 chr12 47094912 47094989 -97187500 + MIR SINE MIR 180 256 -6 23 0 0 0 chr12 47095265 47095288 -97187201 + AT_rich Low_complexity Low_complexity 1 23 0 262 248 134 34 chr12 47095349 47095498 -97186991 + L1ME4a LINE L1 5956 6119 -2 540 338 113 33 chr12 47095509 47096083 -97186406 + L3 LINE CR1 804 1423 -154 700 167 65 0 chr12 47096635 47096773 -97185716 - MIR SINE MIR -50 212 66 1883 114 0 0 chr12 47097334 47097579 -97184910 - AluSg SINE Alu -28 282 38 578 282 6 44 chr12 47098786 47098967 -97183522 - MER20B DNA MER1_type -607 176 3 200 315 34 47 chr12 47099257 47099406 -97183083 - L2 LINE L2 -274 2998 2852 469 298 147 0 chr12 47099532 47099723 -97182766 + MLT1K LTR MaLR 84 302 -286 21 0 0 0 chr12 47100028 47100049 -97182440 + AT_rich Low_complexity Low_complexity 1 21 0 2909 9 0 0 chr12 47100425 47100741 -97181748 - AluYb8 SINE Alu -2 316 1 461 327 109 60 chr12 47101929 47102026 -97180463 - L2 LINE L2 -701 2613 2522 2552 56 0 3 chr12 47102026 47102332 -97180157 + AluY SINE Alu 1 305 -6 461 327 109 60 chr12 47102332 47102702 -97179787 - L2 LINE L2 -792 2522 2123 216 0 0 0 chr12 47102746 47102770 -97179719 + (CA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr12 47102823 47102847 -97179642 + AT_rich Low_complexity Low_complexity 1 24 0 1979 139 0 7 chr12 47103424 47103585 -97178904 - AluSx SINE Alu -19 293 133 423 0 0 0 chr12 47103585 47103632 -97178857 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1979 139 0 7 chr12 47103632 47103764 -97178725 - AluSx SINE Alu -179 133 2 274 305 12 12 chr12 47103835 47103917 -97178572 + MIR SINE MIR 3 84 -178 180 77 0 0 chr12 47104651 47104677 -97177812 + (GA)n Simple_repeat Simple_repeat 1 26 0 5955 138 26 20 chr12 47104811 47106032 -97176457 - L1MA9 LINE L1 -11 6301 5087 253 266 87 71 chr12 47106221 47106405 -97176084 - MIR SINE MIR -7 255 69 208 167 0 24 chr12 47106479 47106521 -97175968 - MIR SINE MIR -187 75 35 6640 98 17 29 chr12 47106871 47107967 -97174522 - L1MA3 LINE L1 -11 6294 5211 245 87 0 22 chr12 47108915 47108961 -97173528 + (ATG)n Simple_repeat Simple_repeat 1 45 0 753 255 145 57 chr12 47111194 47111664 -97170825 + MLT1J LTR MaLR 1 511 0 673 205 103 22 chr12 47111736 47111921 -97170568 - MER58C DNA MER1_type -15 200 1 209 328 54 73 chr12 47113105 47113309 -97169180 + L2 LINE L2 3068 3267 -5 203 263 0 13 chr12 47114046 47114122 -97168367 + (TA)n Simple_repeat Simple_repeat 1 75 0 396 336 17 8 chr12 47116698 47116817 -97165672 + L2 LINE L2 3151 3270 -2 * 574 237 224 32 chr12 47116815 47116942 -97165547 - MIR SINE MIR 0 262 161 836 191 98 25 chr12 47116942 47117146 -97165343 - MER20 DNA MER1_type 0 219 1 574 237 224 32 chr12 47117146 47117237 -97165252 - MIR SINE MIR -101 161 2 243 298 24 0 chr12 47117259 47117343 -97165146 - MIR SINE MIR -10 252 167 458 296 111 45 chr12 47118126 47118325 -97164164 + MIR SINE MIR 30 241 -21 198 296 0 0 chr12 47118291 47118335 -97164154 + L2 LINE L2 3253 3296 -17 * 302 416 15 5 chr12 47119678 47119875 -97162614 + L2 LINE L2 2825 3023 -249 1456 40 6 0 chr12 47120178 47120354 -97162135 + AluY SINE Alu 119 295 -16 21 0 0 0 chr12 47120752 47120773 -97161716 + AT_rich Low_complexity Low_complexity 1 21 0 1648 44 31 0 chr12 47121509 47121737 -97160752 + L1PA2 LINE L1 996 1230 -4916 21298 40 1 1 chr12 47121737 47125157 -97157332 + L1PA2 LINE L1 2736 6152 -3 278 179 0 0 chr12 47125167 47125227 -97157262 + L1 LINE L1 2745 2804 -3342 1099 201 52 117 chr12 47125230 47125603 -97156886 + MLT1A1 LTR MaLR 1 371 -3 3872 149 13 56 chr12 47125930 47126163 -97156326 - L1M1 LINE L1 -743 5403 5161 315 0 0 0 chr12 47126163 47126198 -97156291 + (TG)n Simple_repeat Simple_repeat 2 36 0 3872 149 13 56 chr12 47126198 47126927 -97155562 - L1M1 LINE L1 -985 5161 4600 714 194 33 0 chr12 47126931 47127111 -97155378 + L1 LINE L1 3205 3390 -2756 21 0 0 0 chr12 47128050 47128071 -97154418 + GC_rich Low_complexity Low_complexity 1 21 0 203 263 0 13 chr12 47128832 47128908 -97153581 + (TA)n Simple_repeat Simple_repeat 2 76 0 218 335 63 63 chr12 47129645 47129836 -97152653 - L2 LINE L2 -5 3267 3077 378 259 249 5 chr12 47131139 47131324 -97151165 - MIR SINE MIR 0 262 33 727 249 67 143 chr12 47131533 47132099 -97150390 + MLT1C-int LTR MaLR 742 1264 -107 2674 126 54 12 chr12 47132138 47132637 -97149852 - L1MA8 LINE L1 -4 6287 5768 378 188 31 52 chr12 47132644 47132740 -97149749 + L1MA8 LINE L1 5683 5776 -392 25 0 0 0 chr12 47132803 47132828 -97149661 + AT_rich Low_complexity Low_complexity 1 25 0 665 124 0 16 chr12 47133209 47133330 -97149159 + (GGAA)n Simple_repeat Simple_repeat 3 121 0 1587 226 61 56 chr12 47133347 47133828 -